Changes between Initial Version and Version 1 of Ticket #18858


Ignore:
Timestamp:
Sep 24, 2025, 8:40:17 AM (4 weeks ago)
Author:
pett
Comment:

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #18858

    • Property Component Unassigned → Window Toolkit
    • Property Owner set to Tom Goddard
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → Crash on Mac waking from sleep

  • Ticket #18858 – Description

    initial v1  
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    1553     "path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
    1554     "name" : "libsystem_pthread.dylib"
    1555   },
    1556   {
    1557     "source" : "P",
    1558     "arch" : "arm64e",
    1559     "base" : 6913392640,
    1560     "size" : 528964,
    1561     "uuid" : "dfea8794-80ce-37c3-8f6a-108aa1d0b1b0",
    1562     "path" : "\/usr\/lib\/system\/libsystem_c.dylib",
    1563     "name" : "libsystem_c.dylib"
    1564   },
    1565   {
    1566     "source" : "P",
    1567     "arch" : "arm64e",
    1568     "base" : 6915121152,
    1569     "size" : 32268,
    1570     "uuid" : "fd19a599-8750-31f9-924f-c2810c938371",
    1571     "path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
    1572     "name" : "libsystem_platform.dylib"
    1573   },
    1574   {
    1575     "source" : "P",
    1576     "arch" : "arm64e",
    1577     "base" : 6981824512,
    1578     "CFBundleShortVersionString" : "6.9",
    1579     "CFBundleIdentifier" : "com.apple.AppKit",
    1580     "size" : 21564992,
    1581     "uuid" : "860c164c-d04c-30ff-8c6f-e672b74caf11",
    1582     "path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
    1583     "name" : "AppKit",
    1584     "CFBundleVersion" : "2575.70.52"
    1585   },
    1586   {
    1587     "source" : "P",
    1588     "arch" : "arm64e",
    1589     "base" : 7015804928,
    1590     "CFBundleShortVersionString" : "1.600.0",
    1591     "CFBundleIdentifier" : "com.apple.SkyLight",
    1592     "size" : 5398624,
    1593     "uuid" : "4e052846-80c2-38af-85bf-1482e070a32b",
    1594     "path" : "\/System\/Library\/PrivateFrameworks\/SkyLight.framework\/Versions\/A\/SkyLight",
    1595     "name" : "SkyLight"
    1596   },
    1597   {
    1598     "source" : "P",
    1599     "arch" : "arm64e",
    1600     "base" : 6913089536,
    1601     "size" : 288608,
    1602     "uuid" : "24ce0d89-4114-30c2-a81a-3db1f5931cff",
    1603     "path" : "\/usr\/lib\/system\/libdispatch.dylib",
    1604     "name" : "libdispatch.dylib"
    1605   },
    1606   {
    1607     "source" : "P",
    1608     "arch" : "arm64e",
    1609     "base" : 6915350528,
    1610     "CFBundleShortVersionString" : "6.9",
    1611     "CFBundleIdentifier" : "com.apple.CoreFoundation",
    1612     "size" : 5500928,
    1613     "uuid" : "8d45baee-6cc0-3b89-93fd-ea1c8e15c6d7",
    1614     "path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
    1615     "name" : "CoreFoundation",
    1616     "CFBundleVersion" : "3603"
    1617   },
    1618   {
    1619     "source" : "P",
    1620     "arch" : "arm64e",
    1621     "base" : 7110754304,
    1622     "CFBundleShortVersionString" : "2.1.1",
    1623     "CFBundleIdentifier" : "com.apple.HIToolbox",
    1624     "size" : 3174368,
    1625     "uuid" : "1a037942-11e0-3fc8-aad2-20b11e7ae1a4",
    1626     "path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
    1627     "name" : "HIToolbox"
    1628   },
    1629   {
    1630     "source" : "P",
    1631     "arch" : "arm64e",
    1632     "base" : 6911066112,
    1633     "size" : 636280,
    1634     "uuid" : "3247e185-ced2-36ff-9e29-47a77c23e004",
    1635     "path" : "\/usr\/lib\/dyld",
    1636     "name" : "dyld"
    1637   },
    1638   {
    1639     "size" : 0,
    1640     "source" : "A",
    1641     "base" : 0,
    1642     "uuid" : "00000000-0000-0000-0000-000000000000"
    1643   },
    1644   {
    1645     "source" : "P",
    1646     "arch" : "arm64e",
    1647     "base" : 6913925120,
    1648     "size" : 577528,
    1649     "uuid" : "643ed232-ce19-3f63-8015-0aee768c002f",
    1650     "path" : "\/usr\/lib\/libc++.1.dylib",
    1651     "name" : "libc++.1.dylib"
    1652   }
     74[deleted to fit within ticket limits]
     75
    165376],
    165477  "sharedCache" : {
    … …  
    34881911 
    34891912
    3490 > select clear
    3491 
    3492 Drag select of 23454 atoms 
    3493 
    3494 > close #28
    3495 
    3496 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project files/Shigella/MxiA-
    3497 > project/Data_Images/07072025/fold_2025_06_25_11_12mxian9/fold_2025_06_25_11_12mxian9_model_0.cif"
    3498 
    3499 Chain information for fold_2025_06_25_11_12mxian9_model_0.cif #28 
    3500 --- 
    3501 Chain | Description 
    3502 A B C D E F G H I | . 
    3503  
    3504 
    3505 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project files/Shigella/MxiA-
    3506 > project/Model-PDB-
    3507 > AlphaFolds/MxiA/fold_2025_06_25_11_14mxiacterm9/fold_2025_06_25_11_14mxiacterm9_model_0.cif"
    3508 
    3509 Chain information for fold_2025_06_25_11_14mxiacterm9_model_0.cif #32 
    3510 --- 
    3511 Chain | Description 
    3512 A B C D E F G H I | . 
    3513  
    3514 
    3515 > hide #28 models
    3516 
    3517 > show #28 models
    3518 
    3519 > hide #28 models
    3520 
    3521 > close #28
    3522 
    3523 > select add #32
    3524 
    3525 24777 atoms, 25101 bonds, 3078 residues, 1 model selected 
    3526 
    3527 > select subtract #32
    3528 
    3529 Nothing selected 
    3530 
    3531 > select add #32
    3532 
    3533 24777 atoms, 25101 bonds, 3078 residues, 1 model selected 
    3534 
    3535 > view matrix models #32,1,0,0,65.756,0,1,0,70.918,0,0,1,390.82
    3536 
    3537 > view matrix models #32,1,0,0,16.039,0,1,0,145.88,0,0,1,293.46
    3538 
    3539 > show #!10 models
    3540 
    3541 > view matrix models #32,1,0,0,142.73,0,1,0,138.92,0,0,1,191.2
    3542 
    3543 > ui mousemode right "rotate selected models"
    3544 
    3545 > view matrix models
    3546 > #32,0.98707,-0.037045,-0.15592,142.39,-0.15896,-0.35009,-0.92313,136.64,-0.020391,0.93598,-0.35146,188.56
    3547 
    3548 > ui mousemode right "translate selected models"
    3549 
    3550 > view matrix models
    3551 > #32,0.98707,-0.037045,-0.15592,239.09,-0.15896,-0.35009,-0.92313,208.69,-0.020391,0.93598,-0.35146,317.07
    3552 
    3553 > view matrix models
    3554 > #32,0.98707,-0.037045,-0.15592,260.29,-0.15896,-0.35009,-0.92313,256.31,-0.020391,0.93598,-0.35146,324.65
    3555 
    3556 > hide sel atoms
    3557 
    3558 > show sel cartoons
    3559 
    3560 > view matrix models
    3561 > #32,0.98707,-0.037045,-0.15592,258.45,-0.15896,-0.35009,-0.92313,263.09,-0.020391,0.93598,-0.35146,325.6
    3562 
    3563 > fitmap #32 inMap #10
    3564 
    3565 Fit molecule fold_2025_06_25_11_14mxiacterm9_model_0.cif (#32) to map MxiA.mrc
    3566 gaussian (#10) using 24777 atoms 
    3567 average map value = 0.05387, steps = 80 
    3568 shifted from previous position = 8.87 
    3569 rotated from previous position = 11.2 degrees 
    3570 atoms outside contour = 3988, contour level = 0.019047 
    3571  
    3572 Position of fold_2025_06_25_11_14mxiacterm9_model_0.cif (#32) relative to
    3573 MxiA.mrc gaussian (#10) coordinates: 
    3574 Matrix rotation and translation 
    3575 0.94672117 0.06775242 -0.31484698 257.03305207 
    3576 -0.27647453 -0.33040419 -0.90243831 257.01667001 
    3577 -0.16516914 0.94140463 -0.29406882 331.88158704 
    3578 Axis 0.97990117 -0.07954555 -0.18293771 
    3579 Axis point 0.00000000 8.74481088 286.95774373 
    3580 Rotation angle (degrees) 109.80840352 
    3581 Shift along axis 170.70880132 
    3582  
    3583 
    3584 > fitmap #32 inMap #10
    3585 
    3586 Fit molecule fold_2025_06_25_11_14mxiacterm9_model_0.cif (#32) to map MxiA.mrc
    3587 gaussian (#10) using 24777 atoms 
    3588 average map value = 0.05387, steps = 44 
    3589 shifted from previous position = 0.0278 
    3590 rotated from previous position = 0.0312 degrees 
    3591 atoms outside contour = 3986, contour level = 0.019047 
    3592  
    3593 Position of fold_2025_06_25_11_14mxiacterm9_model_0.cif (#32) relative to
    3594 MxiA.mrc gaussian (#10) coordinates: 
    3595 Matrix rotation and translation 
    3596 0.94673006 0.06774581 -0.31482169 257.02781265 
    3597 -0.27636275 -0.33091491 -0.90228541 256.98954677 
    3598 -0.16530525 0.94122571 -0.29456467 331.87820225 
    3599 Axis 0.97991212 -0.07947496 -0.18290975 
    3600 Axis point 0.00000000 8.79758006 286.88262612 
    3601 Rotation angle (degrees) 109.83878568 
    3602 Shift along axis 170.73667605 
    3603  
    3604 
    3605 > select clear
    3606 
    3607 > open /Users/shoichitachiyama/Desktop/Shigella-Segment-Meeting/6NJP.cif
    3608 
    3609 Summary of feedback from opening /Users/shoichitachiyama/Desktop/Shigella-
    3610 Segment-Meeting/6NJP.cif 
    3611 --- 
    3612 note | Fetching CCD MG from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/G/MG/MG.cif 
    3613  
    3614 6NJP.cif title: 
    3615 Structure of the assembled ATPase EscN in complex with its central stalk EscO
    3616 from the enteropathogenic E. coli (EPEC) type III secretion system [more
    3617 info...] 
    3618  
    3619 Chain information for 6NJP.cif #28 
    3620 --- 
    3621 Chain | Description | UniProt 
    3622 A B C D E F | Translocator EscN | B7UMA6_ECO27 1-446 
    3623 G | EscO | B7UMA5_ECO27 1-125 
    3624  
    3625 Non-standard residues in 6NJP.cif #28 
    3626 --- 
    3627 ADP — adenosine-5'-diphosphate 
    3628 AF3 — aluminum fluoride 
    3629 MG — magnesium ion 
    3630  
    3631 
    3632 > select add #28
    3633 
    3634 19607 atoms, 19905 bonds, 18 pseudobonds, 2563 residues, 3 models selected 
    3635 
    3636 > hide sel atoms
    3637 
    3638 > show sel cartoons
    3639 
    3640 > view matrix models #28,1,0,0,158.75,0,1,0,146.14,0,0,1,96.886
    3641 
    3642 > ui mousemode right "rotate selected models"
    3643 
    3644 > view matrix models
    3645 > #28,-0.087432,-0.085464,-0.9925,391.31,0.32354,0.93986,-0.10943,127,0.94217,-0.33068,-0.054523,132.15
    3646 
    3647 > hide #!16 models
    3648 
    3649 > show #!16 models
    3650 
    3651 > fitmap #28 inMap #16
    3652 
    3653 Fit molecule 6NJP.cif (#28) to map Sortingplatforom.mrc gaussian (#16) using
    3654 19607 atoms 
    3655 average map value = 0.0737, steps = 88 
    3656 shifted from previous position = 20.7 
    3657 rotated from previous position = 35.4 degrees 
    3658 atoms outside contour = 3073, contour level = 0.030714 
    3659  
    3660 Position of 6NJP.cif (#28) relative to Sortingplatforom.mrc gaussian (#16)
    3661 coordinates: 
    3662 Matrix rotation and translation 
    3663 0.00914195 0.41053240 -0.91180019 306.83307042 
    3664 0.01051477 0.91174841 0.41061451 122.03029958 
    3665 0.99990293 -0.01334119 0.00401851 84.67414849 
    3666 Axis -0.21212741 -0.95652599 -0.20014994 
    3667 Axis point 117.28410209 0.00000000 162.81927770 
    3668 Rotation angle (degrees) 92.15170819 
    3669 Shift along axis -198.76038402 
    3670  
    3671 
    3672 > fitmap #28 inMap #16
    3673 
    3674 Fit molecule 6NJP.cif (#28) to map Sortingplatforom.mrc gaussian (#16) using
    3675 19607 atoms 
    3676 average map value = 0.0737, steps = 36 
    3677 shifted from previous position = 0.0761 
    3678 rotated from previous position = 0.0785 degrees 
    3679 atoms outside contour = 3072, contour level = 0.030714 
    3680  
    3681 Position of 6NJP.cif (#28) relative to Sortingplatforom.mrc gaussian (#16)
    3682 coordinates: 
    3683 Matrix rotation and translation 
    3684 0.01012026 0.41134433 -0.91142384 306.68492486 
    3685 0.01015790 0.91138120 0.41143788 121.99921515 
    3686 0.99989719 -0.01342201 0.00504502 84.58123241 
    3687 Axis -0.21257336 -0.95630569 -0.20072864 
    3688 Axis point 117.27096243 0.00000000 162.74843353 
    3689 Rotation angle (degrees) 92.10476150 
    3690 Shift along axis -198.83946429 
    3691  
    3692 
    3693 > select subtract #28
    3694 
    3695 Nothing selected 
    3696 
    3697 > color #28 #c06cd1ff
    3698 
    3699 > hide #32 models
    3700 
    3701 > show #32 models
    3702 
    3703 > color #32 #8a9d93ff
    3704 
    3705 > color #32 #9d5053ff
    3706 
    3707 > hide #!33 models
    3708 
    3709 > show #!33 models
    3710 
    3711 > show #!35 models
    3712 
    3713 > hide #!35 models
    3714 
    3715 > hide #!40 models
    3716 
    3717 > show #!40 models
    3718 
    3719 > split #40
    3720 
    3721 Split 7AH9.cif (#40) into 153 models 
    3722 Chain information for 7AH9.cif 1A #40.1 
    3723 --- 
    3724 Chain | Description 
    3725 1A | No description available 
    3726  
    3727 Chain information for 7AH9.cif 1B #40.2 
    3728 --- 
    3729 Chain | Description 
    3730 1B | No description available 
    3731  
    3732 Chain information for 7AH9.cif 1C #40.3 
    3733 --- 
    3734 Chain | Description 
    3735 1C | No description available 
    3736  
    3737 Chain information for 7AH9.cif 1D #40.4 
    3738 --- 
    3739 Chain | Description 
    3740 1D | No description available 
    3741  
    3742 Chain information for 7AH9.cif 1E #40.5 
    3743 --- 
    3744 Chain | Description 
    3745 1E | No description available 
    3746  
    3747 Chain information for 7AH9.cif 1F #40.6 
    3748 --- 
    3749 Chain | Description 
    3750 1F | No description available 
    3751  
    3752 Chain information for 7AH9.cif 1G #40.7 
    3753 --- 
    3754 Chain | Description 
    3755 1G | No description available 
    3756  
    3757 Chain information for 7AH9.cif 1H #40.8 
    3758 --- 
    3759 Chain | Description 
    3760 1H | No description available 
    3761  
    3762 Chain information for 7AH9.cif 1I #40.9 
    3763 --- 
    3764 Chain | Description 
    3765 1I | No description available 
    3766  
    3767 Chain information for 7AH9.cif 1J #40.10 
    3768 --- 
    3769 Chain | Description 
    3770 1J | No description available 
    3771  
    3772 Chain information for 7AH9.cif 1K #40.11 
    3773 --- 
    3774 Chain | Description 
    3775 1K | No description available 
    3776  
    3777 Chain information for 7AH9.cif 1L #40.12 
    3778 --- 
    3779 Chain | Description 
    3780 1L | No description available 
    3781  
    3782 Chain information for 7AH9.cif 1M #40.13 
    3783 --- 
    3784 Chain | Description 
    3785 1M | No description available 
    3786  
    3787 Chain information for 7AH9.cif 1N #40.14 
    3788 --- 
    3789 Chain | Description 
    3790 1N | No description available 
    3791  
    3792 Chain information for 7AH9.cif 1O #40.15 
    3793 --- 
    3794 Chain | Description 
    3795 1O | No description available 
    3796  
    3797 Chain information for 7AH9.cif 1P #40.16 
    3798 --- 
    3799 Chain | Description 
    3800 1P | No description available 
    3801  
    3802 Chain information for 7AH9.cif 1Z #40.17 
    3803 --- 
    3804 Chain | Description 
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    3806  
    3807 Chain information for 7AH9.cif 2A #40.18 
    3808 --- 
    3809 Chain | Description 
    3810 2A | No description available 
    3811  
    3812 Chain information for 7AH9.cif 2B #40.19 
    3813 --- 
    3814 Chain | Description 
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    3816  
    3817 Chain information for 7AH9.cif 2C #40.20 
    3818 --- 
    3819 Chain | Description 
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    3821  
    3822 Chain information for 7AH9.cif 2D #40.21 
    3823 --- 
    3824 Chain | Description 
    3825 2D | No description available 
    3826  
    3827 Chain information for 7AH9.cif 2E #40.22 
    3828 --- 
    3829 Chain | Description 
    3830 2E | No description available 
    3831  
    3832 Chain information for 7AH9.cif 2F #40.23 
    3833 --- 
    3834 Chain | Description 
    3835 2F | No description available 
    3836  
    3837 Chain information for 7AH9.cif 2G #40.24 
    3838 --- 
    3839 Chain | Description 
    3840 2G | No description available 
    3841  
    3842 Chain information for 7AH9.cif 2H #40.25 
    3843 --- 
    3844 Chain | Description 
    3845 2H | No description available 
    3846  
    3847 Chain information for 7AH9.cif 2I #40.26 
    3848 --- 
    3849 Chain | Description 
    3850 2I | No description available 
    3851  
    3852 Chain information for 7AH9.cif 2J #40.27 
    3853 --- 
    3854 Chain | Description 
    3855 2J | No description available 
    3856  
    3857 Chain information for 7AH9.cif 2K #40.28 
    3858 --- 
    3859 Chain | Description 
    3860 2K | No description available 
    3861  
    3862 Chain information for 7AH9.cif 2L #40.29 
    3863 --- 
    3864 Chain | Description 
    3865 2L | No description available 
    3866  
    3867 Chain information for 7AH9.cif 2M #40.30 
    3868 --- 
    3869 Chain | Description 
    3870 2M | No description available 
    3871  
    3872 Chain information for 7AH9.cif 2N #40.31 
    3873 --- 
    3874 Chain | Description 
    3875 2N | No description available 
    3876  
    3877 Chain information for 7AH9.cif 2O #40.32 
    3878 --- 
    3879 Chain | Description 
    3880 2O | No description available 
    3881  
    3882 Chain information for 7AH9.cif 2P #40.33 
    3883 --- 
    3884 Chain | Description 
    3885 2P | No description available 
    3886  
    3887 Chain information for 7AH9.cif 2Q #40.34 
    3888 --- 
    3889 Chain | Description 
    3890 2Q | No description available 
    3891  
    3892 Chain information for 7AH9.cif 2R #40.35 
    3893 --- 
    3894 Chain | Description 
    3895 2R | No description available 
    3896  
    3897 Chain information for 7AH9.cif 2S #40.36 
    3898 --- 
    3899 Chain | Description 
    3900 2S | No description available 
    3901  
    3902 Chain information for 7AH9.cif 2T #40.37 
    3903 --- 
    3904 Chain | Description 
    3905 2T | No description available 
    3906  
    3907 Chain information for 7AH9.cif 2U #40.38 
    3908 --- 
    3909 Chain | Description 
    3910 2U | No description available 
    3911  
    3912 Chain information for 7AH9.cif 2V #40.39 
    3913 --- 
    3914 Chain | Description 
    3915 2V | No description available 
    3916  
    3917 Chain information for 7AH9.cif 2W #40.40 
    3918 --- 
    3919 Chain | Description 
    3920 2W | No description available 
    3921  
    3922 Chain information for 7AH9.cif 2X #40.41 
    3923 --- 
    3924 Chain | Description 
    3925 2X | No description available 
    3926  
    3927 Chain information for 7AH9.cif 2Y #40.42 
    3928 --- 
    3929 Chain | Description 
    3930 2Y | No description available 
    3931  
    3932 Chain information for 7AH9.cif 2Z #40.43 
    3933 --- 
    3934 Chain | Description 
    3935 2Z | No description available 
    3936  
    3937 Chain information for 7AH9.cif 3A #40.44 
    3938 --- 
    3939 Chain | Description 
    3940 3A | No description available 
    3941  
    3942 Chain information for 7AH9.cif 3B #40.45 
    3943 --- 
    3944 Chain | Description 
    3945 3B | No description available 
    3946  
    3947 Chain information for 7AH9.cif 3C #40.46 
    3948 --- 
    3949 Chain | Description 
    3950 3C | No description available 
    3951  
    3952 Chain information for 7AH9.cif 3D #40.47 
    3953 --- 
    3954 Chain | Description 
    3955 3D | No description available 
    3956  
    3957 Chain information for 7AH9.cif 3E #40.48 
    3958 --- 
    3959 Chain | Description 
    3960 3E | No description available 
    3961  
    3962 Chain information for 7AH9.cif 3F #40.49 
    3963 --- 
    3964 Chain | Description 
    3965 3F | No description available 
    3966  
    3967 Chain information for 7AH9.cif 3G #40.50 
    3968 --- 
    3969 Chain | Description 
    3970 3G | No description available 
    3971  
    3972 Chain information for 7AH9.cif 3H #40.51 
    3973 --- 
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    3975 3H | No description available 
    3976  
    3977 Chain information for 7AH9.cif 3I #40.52 
    3978 --- 
    3979 Chain | Description 
    3980 3I | No description available 
    3981  
    3982 Chain information for 7AH9.cif 3J #40.53 
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    3984 Chain | Description 
    3985 3J | No description available 
    3986  
    3987 Chain information for 7AH9.cif 3K #40.54 
    3988 --- 
    3989 Chain | Description 
    3990 3K | No description available 
    3991  
    3992 Chain information for 7AH9.cif 3L #40.55 
    3993 --- 
    3994 Chain | Description 
    3995 3L | No description available 
    3996  
    3997 Chain information for 7AH9.cif 3M #40.56 
    3998 --- 
    3999 Chain | Description 
    4000 3M | No description available 
    4001  
    4002 Chain information for 7AH9.cif 3N #40.57 
    4003 --- 
    4004 Chain | Description 
    4005 3N | No description available 
    4006  
    4007 Chain information for 7AH9.cif 3O #40.58 
    4008 --- 
    4009 Chain | Description 
    4010 3O | No description available 
    4011  
    4012 Chain information for 7AH9.cif 3P #40.59 
    4013 --- 
    4014 Chain | Description 
    4015 3P | No description available 
    4016  
    4017 Chain information for 7AH9.cif 3Q #40.60 
    4018 --- 
    4019 Chain | Description 
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    4021  
    4022 Chain information for 7AH9.cif 3R #40.61 
    4023 --- 
    4024 Chain | Description 
    4025 3R | No description available 
    4026  
    4027 Chain information for 7AH9.cif 3S #40.62 
    4028 --- 
    4029 Chain | Description 
    4030 3S | No description available 
    4031  
    4032 Chain information for 7AH9.cif 3T #40.63 
    4033 --- 
    4034 Chain | Description 
    4035 3T | No description available 
    4036  
    4037 Chain information for 7AH9.cif 3U #40.64 
    4038 --- 
    4039 Chain | Description 
    4040 3U | No description available 
    4041  
    4042 Chain information for 7AH9.cif 3V #40.65 
    4043 --- 
    4044 Chain | Description 
    4045 3V | No description available 
    4046  
    4047 Chain information for 7AH9.cif 3W #40.66 
    4048 --- 
    4049 Chain | Description 
    4050 3W | No description available 
    4051  
    4052 Chain information for 7AH9.cif 3X #40.67 
    4053 --- 
    4054 Chain | Description 
    4055 3X | No description available 
    4056  
    4057 Chain information for 7AH9.cif 3Y #40.68 
    4058 --- 
    4059 Chain | Description 
    4060 3Y | No description available 
    4061  
    4062 Chain information for 7AH9.cif 3Z #40.69 
    4063 --- 
    4064 Chain | Description 
    4065 3Z | No description available 
    4066  
    4067 Chain information for 7AH9.cif 4A #40.70 
    4068 --- 
    4069 Chain | Description 
    4070 4A | No description available 
    4071  
    4072 Chain information for 7AH9.cif 4B #40.71 
    4073 --- 
    4074 Chain | Description 
    4075 4B | No description available 
    4076  
    4077 Chain information for 7AH9.cif 4C #40.72 
    4078 --- 
    4079 Chain | Description 
    4080 4C | No description available 
    4081  
    4082 Chain information for 7AH9.cif 4D #40.73 
    4083 --- 
    4084 Chain | Description 
    4085 4D | No description available 
    4086  
    4087 Chain information for 7AH9.cif 4E #40.74 
    4088 --- 
    4089 Chain | Description 
    4090 4E | No description available 
    4091  
    4092 Chain information for 7AH9.cif 4F #40.75 
    4093 --- 
    4094 Chain | Description 
    4095 4F | No description available 
    4096  
    4097 Chain information for 7AH9.cif 4G #40.76 
    4098 --- 
    4099 Chain | Description 
    4100 4G | No description available 
    4101  
    4102 Chain information for 7AH9.cif 4H #40.77 
    4103 --- 
    4104 Chain | Description 
    4105 4H | No description available 
    4106  
    4107 Chain information for 7AH9.cif 4I #40.78 
    4108 --- 
    4109 Chain | Description 
    4110 4I | No description available 
    4111  
    4112 Chain information for 7AH9.cif 4J #40.79 
    4113 --- 
    4114 Chain | Description 
    4115 4J | No description available 
    4116  
    4117 Chain information for 7AH9.cif 4K #40.80 
    4118 --- 
    4119 Chain | Description 
    4120 4K | No description available 
    4121  
    4122 Chain information for 7AH9.cif 4L #40.81 
    4123 --- 
    4124 Chain | Description 
    4125 4L | No description available 
    4126  
    4127 Chain information for 7AH9.cif 4M #40.82 
    4128 --- 
    4129 Chain | Description 
    4130 4M | No description available 
    4131  
    4132 Chain information for 7AH9.cif 4N #40.83 
    4133 --- 
    4134 Chain | Description 
    4135 4N | No description available 
    4136  
    4137 Chain information for 7AH9.cif 4O #40.84 
    4138 --- 
    4139 Chain | Description 
    4140 4O | No description available 
    4141  
    4142 Chain information for 7AH9.cif 4P #40.85 
    4143 --- 
    4144 Chain | Description 
    4145 4P | No description available 
    4146  
    4147 Chain information for 7AH9.cif 4Q #40.86 
    4148 --- 
    4149 Chain | Description 
    4150 4Q | No description available 
    4151  
    4152 Chain information for 7AH9.cif 4R #40.87 
    4153 --- 
    4154 Chain | Description 
    4155 4R | No description available 
    4156  
    4157 Chain information for 7AH9.cif 4S #40.88 
    4158 --- 
    4159 Chain | Description 
    4160 4S | No description available 
    4161  
    4162 Chain information for 7AH9.cif 4T #40.89 
    4163 --- 
    4164 Chain | Description 
    4165 4T | No description available 
    4166  
    4167 Chain information for 7AH9.cif 5A #40.90 
    4168 --- 
    4169 Chain | Description 
    4170 5A | No description available 
    4171  
    4172 Chain information for 7AH9.cif 5B #40.91 
    4173 --- 
    4174 Chain | Description 
    4175 5B | No description available 
    4176  
    4177 Chain information for 7AH9.cif 5C #40.92 
    4178 --- 
    4179 Chain | Description 
    4180 5C | No description available 
    4181  
    4182 Chain information for 7AH9.cif 5D #40.93 
    4183 --- 
    4184 Chain | Description 
    4185 5D | No description available 
    4186  
    4187 Chain information for 7AH9.cif 5E #40.94 
    4188 --- 
    4189 Chain | Description 
    4190 5E | No description available 
    4191  
    4192 Chain information for 7AH9.cif 5F #40.95 
    4193 --- 
    4194 Chain | Description 
    4195 5F | No description available 
    4196  
    4197 Chain information for 7AH9.cif 5G #40.96 
    4198 --- 
    4199 Chain | Description 
    4200 5G | No description available 
    4201  
    4202 Chain information for 7AH9.cif 5H #40.97 
    4203 --- 
    4204 Chain | Description 
    4205 5H | No description available 
    4206  
    4207 Chain information for 7AH9.cif 5I #40.98 
    4208 --- 
    4209 Chain | Description 
    4210 5I | No description available 
    4211  
    4212 Chain information for 7AH9.cif 5J #40.99 
    4213 --- 
    4214 Chain | Description 
    4215 5J | No description available 
    4216  
    4217 Chain information for 7AH9.cif 5K #40.100 
    4218 --- 
    4219 Chain | Description 
    4220 5K | No description available 
    4221  
    4222 Chain information for 7AH9.cif 5L #40.101 
    4223 --- 
    4224 Chain | Description 
    4225 5L | No description available 
    4226  
    4227 Chain information for 7AH9.cif 5M #40.102 
    4228 --- 
    4229 Chain | Description 
    4230 5M | No description available 
    4231  
    4232 Chain information for 7AH9.cif 5N #40.103 
    4233 --- 
    4234 Chain | Description 
    4235 5N | No description available 
    4236  
    4237 Chain information for 7AH9.cif 5O #40.104 
    4238 --- 
    4239 Chain | Description 
    4240 5O | No description available 
    4241  
    4242 Chain information for 7AH9.cif 5P #40.105 
    4243 --- 
    4244 Chain | Description 
    4245 5P | No description available 
    4246  
    4247 Chain information for 7AH9.cif 6A #40.106 
    4248 --- 
    4249 Chain | Description 
    4250 6A | No description available 
    4251  
    4252 Chain information for 7AH9.cif 6B #40.107 
    4253 --- 
    4254 Chain | Description 
    4255 6B | No description available 
    4256  
    4257 Chain information for 7AH9.cif 6C #40.108 
    4258 --- 
    4259 Chain | Description 
    4260 6C | No description available 
    4261  
    4262 Chain information for 7AH9.cif 6D #40.109 
    4263 --- 
    4264 Chain | Description 
    4265 6D | No description available 
    4266  
    4267 Chain information for 7AH9.cif 6E #40.110 
    4268 --- 
    4269 Chain | Description 
    4270 6E | No description available 
    4271  
    4272 Chain information for 7AH9.cif 6F #40.111 
    4273 --- 
    4274 Chain | Description 
    4275 6F | No description available 
    4276  
    4277 Chain information for 7AH9.cif 6G #40.112 
    4278 --- 
    4279 Chain | Description 
    4280 6G | No description available 
    4281  
    4282 Chain information for 7AH9.cif 6H #40.113 
    4283 --- 
    4284 Chain | Description 
    4285 6H | No description available 
    4286  
    4287 Chain information for 7AH9.cif 6I #40.114 
    4288 --- 
    4289 Chain | Description 
    4290 6I | No description available 
    4291  
    4292 Chain information for 7AH9.cif 6J #40.115 
    4293 --- 
    4294 Chain | Description 
    4295 6J | No description available 
    4296  
    4297 Chain information for 7AH9.cif 6K #40.116 
    4298 --- 
    4299 Chain | Description 
    4300 6K | No description available 
    4301  
    4302 Chain information for 7AH9.cif 6L #40.117 
    4303 --- 
    4304 Chain | Description 
    4305 6L | No description available 
    4306  
    4307 Chain information for 7AH9.cif 6M #40.118 
    4308 --- 
    4309 Chain | Description 
    4310 6M | No description available 
    4311  
    4312 Chain information for 7AH9.cif 6N #40.119 
    4313 --- 
    4314 Chain | Description 
    4315 6N | No description available 
    4316  
    4317 Chain information for 7AH9.cif 6O #40.120 
    4318 --- 
    4319 Chain | Description 
    4320 6O | No description available 
    4321  
    4322 Chain information for 7AH9.cif 6P #40.121 
    4323 --- 
    4324 Chain | Description 
    4325 6P | No description available 
    4326  
    4327 Chain information for 7AH9.cif 6Q #40.122 
    4328 --- 
    4329 Chain | Description 
    4330 6Q | No description available 
    4331  
    4332 Chain information for 7AH9.cif 6R #40.123 
    4333 --- 
    4334 Chain | Description 
    4335 6R | No description available 
    4336  
    4337 Chain information for 7AH9.cif 6S #40.124 
    4338 --- 
    4339 Chain | Description 
    4340 6S | No description available 
    4341  
    4342 Chain information for 7AH9.cif 6T #40.125 
    4343 --- 
    4344 Chain | Description 
    4345 6T | No description available 
    4346  
    4347 Chain information for 7AH9.cif 6U #40.126 
    4348 --- 
    4349 Chain | Description 
    4350 6U | No description available 
    4351  
    4352 Chain information for 7AH9.cif 6V #40.127 
    4353 --- 
    4354 Chain | Description 
    4355 6V | No description available 
    4356  
    4357 Chain information for 7AH9.cif 6W #40.128 
    4358 --- 
    4359 Chain | Description 
    4360 6W | No description available 
    4361  
    4362 Chain information for 7AH9.cif 6X #40.129 
    4363 --- 
    4364 Chain | Description 
    4365 6X | No description available 
    4366  
    4367 Chain information for 7AH9.cif 7A #40.130 
    4368 --- 
    4369 Chain | Description 
    4370 7A | No description available 
    4371  
    4372 Chain information for 7AH9.cif 7B #40.131 
    4373 --- 
    4374 Chain | Description 
    4375 7B | No description available 
    4376  
    4377 Chain information for 7AH9.cif 7C #40.132 
    4378 --- 
    4379 Chain | Description 
    4380 7C | No description available 
    4381  
    4382 Chain information for 7AH9.cif 7D #40.133 
    4383 --- 
    4384 Chain | Description 
    4385 7D | No description available 
    4386  
    4387 Chain information for 7AH9.cif 7E #40.134 
    4388 --- 
    4389 Chain | Description 
    4390 7E | No description available 
    4391  
    4392 Chain information for 7AH9.cif 7F #40.135 
    4393 --- 
    4394 Chain | Description 
    4395 7F | No description available 
    4396  
    4397 Chain information for 7AH9.cif 7G #40.136 
    4398 --- 
    4399 Chain | Description 
    4400 7G | No description available 
    4401  
    4402 Chain information for 7AH9.cif 7H #40.137 
    4403 --- 
    4404 Chain | Description 
    4405 7H | No description available 
    4406  
    4407 Chain information for 7AH9.cif 7I #40.138 
    4408 --- 
    4409 Chain | Description 
    4410 7I | No description available 
    4411  
    4412 Chain information for 7AH9.cif 7J #40.139 
    4413 --- 
    4414 Chain | Description 
    4415 7J | No description available 
    4416  
    4417 Chain information for 7AH9.cif 7K #40.140 
    4418 --- 
    4419 Chain | Description 
    4420 7K | No description available 
    4421  
    4422 Chain information for 7AH9.cif 7L #40.141 
    4423 --- 
    4424 Chain | Description 
    4425 7L | No description available 
    4426  
    4427 Chain information for 7AH9.cif 7M #40.142 
    4428 --- 
    4429 Chain | Description 
    4430 7M | No description available 
    4431  
    4432 Chain information for 7AH9.cif 7N #40.143 
    4433 --- 
    4434 Chain | Description 
    4435 7N | No description available 
    4436  
    4437 Chain information for 7AH9.cif 7O #40.144 
    4438 --- 
    4439 Chain | Description 
    4440 7O | No description available 
    4441  
    4442 Chain information for 7AH9.cif 7P #40.145 
    4443 --- 
    4444 Chain | Description 
    4445 7P | No description available 
    4446  
    4447 Chain information for 7AH9.cif 7Q #40.146 
    4448 --- 
    4449 Chain | Description 
    4450 7Q | No description available 
    4451  
    4452 Chain information for 7AH9.cif 7R #40.147 
    4453 --- 
    4454 Chain | Description 
    4455 7R | No description available 
    4456  
    4457 Chain information for 7AH9.cif 7S #40.148 
    4458 --- 
    4459 Chain | Description 
    4460 7S | No description available 
    4461  
    4462 Chain information for 7AH9.cif 7T #40.149 
    4463 --- 
    4464 Chain | Description 
    4465 7T | No description available 
    4466  
    4467 Chain information for 7AH9.cif 7U #40.150 
    4468 --- 
    4469 Chain | Description 
    4470 7U | No description available 
    4471  
    4472 Chain information for 7AH9.cif 7V #40.151 
    4473 --- 
    4474 Chain | Description 
    4475 7V | No description available 
    4476  
    4477 Chain information for 7AH9.cif 7W #40.152 
    4478 --- 
    4479 Chain | Description 
    4480 7W | No description available 
    4481  
    4482 Chain information for 7AH9.cif 7X #40.153 
    4483 --- 
    4484 Chain | Description 
    4485 7X | No description available 
    4486  
    4487 
    4488 > select add #40.1
    4489 
    4490 3701 atoms, 3737 bonds, 225 residues, 1 model selected 
    4491 
    4492 > select add #40.2
    4493 
    4494 7252 atoms, 7326 bonds, 448 residues, 2 models selected 
    4495 
    4496 > select add #40.3
    4497 
    4498 10829 atoms, 10941 bonds, 671 residues, 3 models selected 
    4499 
    4500 > select add #40.4
    4501 
    4502 14412 atoms, 14561 bonds, 892 residues, 4 models selected 
    4503 
    4504 > select add #40.5
    4505 
    4506 17957 atoms, 18144 bonds, 1113 residues, 5 models selected 
    4507 
    4508 > color #40.1 #eb7875ff
    4509 
    4510 > color #40.1 #eba62cff
    4511 
    4512 > color #40.1 #ebbd13ff
    4513 
    4514 > color sel #ebbd13ff
    4515 
    4516 > select clear
    4517 
    4518 > select add #40.6
    4519 
    4520 3967 atoms, 4019 bonds, 257 residues, 1 model selected 
    4521 
    4522 > select subtract #40.6
    4523 
    4524 Nothing selected 
    4525 
    4526 > hide #40.6 models
    4527 
    4528 > show #40.6 models
    4529 
    4530 > select add #40.7
    4531 
    4532 1386 atoms, 1398 bonds, 85 residues, 1 model selected 
    4533 
    4534 > hide #40.150 models
    4535 
    4536 > show #40.150 models
    4537 
    4538 > color #40.153 #90d8d9ff
    4539 
    4540 > color #40.153 #59c1d9ff
    4541 
    4542 > select add #40.153
    4543 
    4544 5022 atoms, 5079 bonds, 307 residues, 2 models selected 
    4545 
    4546 > select add #40.152
    4547 
    4548 8658 atoms, 8760 bonds, 529 residues, 3 models selected 
    4549 
    4550 > select add #40.151
    4551 
    4552 12260 atoms, 12406 bonds, 749 residues, 4 models selected 
    4553 
    4554 > select add #40.150
    4555 
    4556 15896 atoms, 16087 bonds, 971 residues, 5 models selected 
    4557 
    4558 > select add #40.149
    4559 
    4560 19532 atoms, 19768 bonds, 1193 residues, 6 models selected 
    4561 
    4562 > select add #40.148
    4563 
    4564 23134 atoms, 23414 bonds, 1413 residues, 7 models selected 
    4565 
    4566 > select add #40.147
    4567 
    4568 26770 atoms, 27095 bonds, 1635 residues, 8 models selected 
    4569 
    4570 > select add #40.146
    4571 
    4572 30406 atoms, 30776 bonds, 1857 residues, 9 models selected 
    4573 
    4574 > select add #40.145
    4575 
    4576 34008 atoms, 34422 bonds, 2077 residues, 10 models selected 
    4577 
    4578 > select add #40.144
    4579 
    4580 37644 atoms, 38103 bonds, 2299 residues, 11 models selected 
    4581 
    4582 > select add #40.143
    4583 
    4584 41280 atoms, 41784 bonds, 2521 residues, 12 models selected 
    4585 
    4586 > select add #40.142
    4587 
    4588 44882 atoms, 45430 bonds, 2741 residues, 13 models selected 
    4589 
    4590 > select add #40.141
    4591 
    4592 48518 atoms, 49111 bonds, 2963 residues, 14 models selected 
    4593 
    4594 > select add #40.140
    4595 
    4596 52154 atoms, 52792 bonds, 3185 residues, 15 models selected 
    4597 
    4598 > select add #40.139
    4599 
    4600 55756 atoms, 56438 bonds, 3405 residues, 16 models selected 
    4601 
    4602 > select add #40.138
    4603 
    4604 59392 atoms, 60119 bonds, 3627 residues, 17 models selected 
    4605 
    4606 > select add #40.137
    4607 
    4608 63028 atoms, 63800 bonds, 3849 residues, 18 models selected 
    4609 
    4610 > select add #40.136
    4611 
    4612 66630 atoms, 67446 bonds, 4069 residues, 19 models selected 
    4613 
    4614 > select add #40.135
    4615 
    4616 70266 atoms, 71127 bonds, 4291 residues, 20 models selected 
    4617 
    4618 > select add #40.134
    4619 
    4620 73902 atoms, 74808 bonds, 4513 residues, 21 models selected 
    4621 
    4622 > select add #40.133
    4623 
    4624 77504 atoms, 78454 bonds, 4733 residues, 22 models selected 
    4625 
    4626 > select add #40.132
    4627 
    4628 81140 atoms, 82135 bonds, 4955 residues, 23 models selected 
    4629 
    4630 > select add #40.131
    4631 
    4632 84776 atoms, 85816 bonds, 5177 residues, 24 models selected 
    4633 
    4634 > select add #40.130
    4635 
    4636 88378 atoms, 89462 bonds, 5397 residues, 25 models selected 
    4637 
    4638 > select add #40.129
    4639 
    4640 91227 atoms, 92339 bonds, 5580 residues, 26 models selected 
    4641 
    4642 > select subtract #40.129
    4643 
    4644 88378 atoms, 89462 bonds, 5397 residues, 25 models selected 
    4645 
    4646 > color sel #59c1d9ff
    4647 
    4648 > select clear
    4649 
    4650 > color #40.129 #7dd1f7ff
    4651 
    4652 > color #40.129 #71f7afff
    4653 
    4654 > color #40.129 #5ff7b2ff
    4655 
    4656 > color #40.129 #baf7e9ff
    4657 
    4658 > color #40.129 #d7f7d8ff
    4659 
    4660 > color #40.129 #53f7c4ff
    4661 
    4662 > color #40.129 #879bf7ff
    4663 
    4664 > color #40.129 #60aaf7ff
    4665 
    4666 > color #40.129 #5073f7ff
    4667 
    4668 > color #40.129 #5a82f7ff
    4669 
    4670 > select add #40.128
    4671 
    4672 2849 atoms, 2877 bonds, 183 residues, 1 model selected 
    4673 
    4674 > select add #40.127
    4675 
    4676 5697 atoms, 5753 bonds, 366 residues, 2 models selected 
    4677 
    4678 > select add #40.126
    4679 
    4680 8546 atoms, 8630 bonds, 549 residues, 3 models selected 
    4681 
    4682 > select add #40.125
    4683 
    4684 11395 atoms, 11507 bonds, 732 residues, 4 models selected 
    4685 
    4686 > select add #40.124
    4687 
    4688 14243 atoms, 14383 bonds, 915 residues, 5 models selected 
    4689 
    4690 > select add #40.123
    4691 
    4692 17092 atoms, 17260 bonds, 1098 residues, 6 models selected 
    4693 
    4694 > select add #40.122
    4695 
    4696 19941 atoms, 20137 bonds, 1281 residues, 7 models selected 
    4697 
    4698 > select add #40.121
    4699 
    4700 22790 atoms, 23014 bonds, 1464 residues, 8 models selected 
    4701 
    4702 > select add #40.120
    4703 
    4704 25639 atoms, 25891 bonds, 1647 residues, 9 models selected 
    4705 
    4706 > select add #40.119
    4707 
    4708 28488 atoms, 28768 bonds, 1830 residues, 10 models selected 
    4709 
    4710 > select add #40.118
    4711 
    4712 31337 atoms, 31645 bonds, 2013 residues, 11 models selected 
    4713 
    4714 > select add #40.117
    4715 
    4716 34186 atoms, 34522 bonds, 2196 residues, 12 models selected 
    4717 
    4718 > select add #40.116
    4719 
    4720 37035 atoms, 37399 bonds, 2379 residues, 13 models selected 
    4721 
    4722 > select add #40.115
    4723 
    4724 39884 atoms, 40276 bonds, 2562 residues, 14 models selected 
    4725 
    4726 > select add #40.114
    4727 
    4728 42733 atoms, 43153 bonds, 2745 residues, 15 models selected 
    4729 
    4730 > select add #40.113
    4731 
    4732 45582 atoms, 46030 bonds, 2928 residues, 16 models selected 
    4733 
    4734 > select add #40.112
    4735 
    4736 48431 atoms, 48907 bonds, 3111 residues, 17 models selected 
    4737 
    4738 > select add #40.111
    4739 
    4740 51280 atoms, 51784 bonds, 3294 residues, 18 models selected 
    4741 
    4742 > select add #40.110
    4743 
    4744 54129 atoms, 54661 bonds, 3477 residues, 19 models selected 
    4745 
    4746 > select add #40.109
    4747 
    4748 56978 atoms, 57538 bonds, 3660 residues, 20 models selected 
    4749 
    4750 > select add #40.108
    4751 
    4752 59827 atoms, 60415 bonds, 3843 residues, 21 models selected 
    4753 
    4754 > select add #40.107
    4755 
    4756 62676 atoms, 63292 bonds, 4026 residues, 22 models selected 
    4757 
    4758 > select add #40.106
    4759 
    4760 65525 atoms, 66169 bonds, 4209 residues, 23 models selected 
    4761 
    4762 > color sel #5a82f7ff
    4763 
    4764 > select clear
    4765 
    4766 > color #40.105 #62c0e4ff
    4767 
    4768 > color #40.105 #1c7ae4ff
    4769 
    4770 > color #40.105 #1e8ae4ff
    4771 
    4772 > color #40.105 #1b9be4ff
    4773 
    4774 > color #40.105 #1c90e4ff
    4775 
    4776 > select add #40.105
    4777 
    4778 7851 atoms, 7916 bonds, 1 pseudobond, 500 residues, 2 models selected 
    4779 
    4780 > select add #40.104
    4781 
    4782 15668 atoms, 15798 bonds, 2 pseudobonds, 998 residues, 4 models selected 
    4783 
    4784 > select add #40.103
    4785 
    4786 23541 atoms, 23736 bonds, 3 pseudobonds, 1499 residues, 6 models selected 
    4787 
    4788 > select add #40.102
    4789 
    4790 31388 atoms, 31647 bonds, 4 pseudobonds, 1999 residues, 8 models selected 
    4791 
    4792 > select add #40.101
    4793 
    4794 39342 atoms, 39666 bonds, 5 pseudobonds, 2505 residues, 10 models selected 
    4795 
    4796 > select add #40.100
    4797 
    4798 47221 atoms, 47610 bonds, 6 pseudobonds, 3007 residues, 12 models selected 
    4799 
    4800 > select add #40.99
    4801 
    4802 55202 atoms, 55656 bonds, 7 pseudobonds, 3515 residues, 14 models selected 
    4803 
    4804 > select add #40.98
    4805 
    4806 63100 atoms, 63619 bonds, 8 pseudobonds, 4018 residues, 16 models selected 
    4807 
    4808 > select add #40.97
    4809 
    4810 71052 atoms, 71636 bonds, 9 pseudobonds, 4524 residues, 18 models selected 
    4811 
    4812 > select add #40.96
    4813 
    4814 78961 atoms, 79610 bonds, 10 pseudobonds, 5028 residues, 20 models selected 
    4815 
    4816 > select add #40.95
    4817 
    4818 86914 atoms, 87628 bonds, 11 pseudobonds, 5534 residues, 22 models selected 
    4819 
    4820 > select add #40.94
    4821 
    4822 94812 atoms, 95591 bonds, 12 pseudobonds, 6037 residues, 24 models selected 
    4823 
    4824 > select add #40.93
    4825 
    4826 102765 atoms, 103609 bonds, 13 pseudobonds, 6543 residues, 26 models selected 
    4827 
    4828 > select add #40.92
    4829 
    4830 110627 atoms, 111536 bonds, 14 pseudobonds, 7044 residues, 28 models selected 
    4831 
    4832 > select add #40.91
    4833 
    4834 118511 atoms, 119485 bonds, 15 pseudobonds, 7546 residues, 30 models selected 
    4835 
    4836 > select add #40.90
    4837 
    4838 120752 atoms, 121749 bonds, 15 pseudobonds, 7687 residues, 31 models selected 
    4839 
    4840 > color sel #1c90e4ff
    4841 
    4842 > select clear
    4843 
    4844 > select add #40.89
    4845 
    4846 1197 atoms, 1208 bonds, 77 residues, 1 model selected 
    4847 
    4848 > select add #40.88
    4849 
    4850 2394 atoms, 2416 bonds, 154 residues, 2 models selected 
    4851 
    4852 > select add #40.87
    4853 
    4854 3591 atoms, 3624 bonds, 231 residues, 3 models selected 
    4855 
    4856 > select add #40.86
    4857 
    4858 4788 atoms, 4832 bonds, 308 residues, 4 models selected 
    4859 
    4860 > select add #40.85
    4861 
    4862 5985 atoms, 6040 bonds, 385 residues, 5 models selected 
    4863 
    4864 > select add #40.84
    4865 
    4866 7182 atoms, 7248 bonds, 462 residues, 6 models selected 
    4867 
    4868 > select add #40.83
    4869 
    4870 8379 atoms, 8456 bonds, 539 residues, 7 models selected 
    4871 
    4872 > select add #40.82
    4873 
    4874 9576 atoms, 9664 bonds, 616 residues, 8 models selected 
    4875 
    4876 > select add #40.81
    4877 
    4878 10773 atoms, 10872 bonds, 693 residues, 9 models selected 
    4879 
    4880 > select add #40.80
    4881 
    4882 11970 atoms, 12080 bonds, 770 residues, 10 models selected 
    4883 
    4884 > select add #40.79
    4885 
    4886 13167 atoms, 13288 bonds, 847 residues, 11 models selected 
    4887 
    4888 > select add #40.78
    4889 
    4890 14364 atoms, 14496 bonds, 924 residues, 12 models selected 
    4891 
    4892 > select add #40.77
    4893 
    4894 15561 atoms, 15704 bonds, 1001 residues, 13 models selected 
    4895 
    4896 > select add #40.76
    4897 
    4898 16758 atoms, 16912 bonds, 1078 residues, 14 models selected 
    4899 
    4900 > select add #40.75
    4901 
    4902 17955 atoms, 18120 bonds, 1155 residues, 15 models selected 
    4903 
    4904 > select add #40.74
    4905 
    4906 19152 atoms, 19328 bonds, 1232 residues, 16 models selected 
    4907 
    4908 > select add #40.73
    4909 
    4910 20349 atoms, 20536 bonds, 1309 residues, 17 models selected 
    4911 
    4912 > select add #40.72
    4913 
    4914 21546 atoms, 21744 bonds, 1386 residues, 18 models selected 
    4915 
    4916 > select add #40.71
    4917 
    4918 22743 atoms, 22952 bonds, 1463 residues, 19 models selected 
    4919 
    4920 > select add #40.70
    4921 
    4922 23940 atoms, 24160 bonds, 1540 residues, 20 models selected 
    4923 
    4924 > select add #40.69
    4925 
    4926 25137 atoms, 25368 bonds, 1617 residues, 21 models selected 
    4927 
    4928 > select add #40.68
    4929 
    4930 26334 atoms, 26576 bonds, 1694 residues, 22 models selected 
    4931 
    4932 > select add #40.67
    4933 
    4934 27531 atoms, 27784 bonds, 1771 residues, 23 models selected 
    4935 
    4936 > select add #40.66
    4937 
    4938 28728 atoms, 28992 bonds, 1848 residues, 24 models selected 
    4939 
    4940 > select add #40.65
    4941 
    4942 29925 atoms, 30200 bonds, 1925 residues, 25 models selected 
    4943 
    4944 > select add #40.64
    4945 
    4946 31122 atoms, 31408 bonds, 2002 residues, 26 models selected 
    4947 
    4948 > select add #40.63
    4949 
    4950 32319 atoms, 32616 bonds, 2079 residues, 27 models selected 
    4951 
    4952 > select add #40.62
    4953 
    4954 33516 atoms, 33824 bonds, 2156 residues, 28 models selected 
    4955 
    4956 > select add #40.61
    4957 
    4958 34713 atoms, 35032 bonds, 2233 residues, 29 models selected 
    4959 
    4960 > select add #40.60
    4961 
    4962 35910 atoms, 36240 bonds, 2310 residues, 30 models selected 
    4963 
    4964 > select add #40.59
    4965 
    4966 37107 atoms, 37448 bonds, 2387 residues, 31 models selected 
    4967 
    4968 > select add #40.58
    4969 
    4970 38304 atoms, 38656 bonds, 2464 residues, 32 models selected 
    4971 
    4972 > select add #40.57
    4973 
    4974 39514 atoms, 39877 bonds, 2542 residues, 33 models selected 
    4975 
    4976 > select add #40.56
    4977 
    4978 40724 atoms, 41098 bonds, 2620 residues, 34 models selected 
    4979 
    4980 > select add #40.55
    4981 
    4982 41921 atoms, 42306 bonds, 2697 residues, 35 models selected 
    4983 
    4984 > select add #40.54
    4985 
    4986 43131 atoms, 43527 bonds, 2775 residues, 36 models selected 
    4987 
    4988 > select add #40.53
    4989 
    4990 44341 atoms, 44748 bonds, 2853 residues, 37 models selected 
    4991 
    4992 > select add #40.52
    4993 
    4994 45551 atoms, 45969 bonds, 2931 residues, 38 models selected 
    4995 
    4996 > select add #40.51
    4997 
    4998 46761 atoms, 47190 bonds, 3009 residues, 39 models selected 
    4999 
    5000 > select add #40.50
    5001 
    5002 47981 atoms, 48421 bonds, 3088 residues, 40 models selected 
    5003 
    5004 > select add #40.49
    5005 
    5006 49191 atoms, 49642 bonds, 3166 residues, 41 models selected 
    5007 
    5008 > select add #40.48
    5009 
    5010 50401 atoms, 50863 bonds, 3244 residues, 42 models selected 
    5011 
    5012 > select add #40.47
    5013 
    5014 51611 atoms, 52084 bonds, 3322 residues, 43 models selected 
    5015 
    5016 > select add #40.46
    5017 
    5018 52821 atoms, 53305 bonds, 3400 residues, 44 models selected 
    5019 
    5020 > select add #40.45
    5021 
    5022 54041 atoms, 54536 bonds, 3479 residues, 45 models selected 
    5023 
    5024 > select add #40.44
    5025 
    5026 55261 atoms, 55767 bonds, 3558 residues, 46 models selected 
    5027 
    5028 > select add #40.43
    5029 
    5030 56471 atoms, 56988 bonds, 3636 residues, 47 models selected 
    5031 
    5032 > select add #40.42
    5033 
    5034 57681 atoms, 58209 bonds, 3714 residues, 48 models selected 
    5035 
    5036 > select add #40.41
    5037 
    5038 58891 atoms, 59430 bonds, 3792 residues, 49 models selected 
    5039 
    5040 > select add #40.40
    5041 
    5042 60111 atoms, 60661 bonds, 3871 residues, 50 models selected 
    5043 
    5044 > select add #40.39
    5045 
    5046 61331 atoms, 61892 bonds, 3950 residues, 51 models selected 
    5047 
    5048 > select add #40.38
    5049 
    5050 62541 atoms, 63113 bonds, 4028 residues, 52 models selected 
    5051 
    5052 > select add #40.37
    5053 
    5054 63761 atoms, 64344 bonds, 4107 residues, 53 models selected 
    5055 
    5056 > select add #40.36
    5057 
    5058 64971 atoms, 65565 bonds, 4185 residues, 54 models selected 
    5059 
    5060 > select add #40.35
    5061 
    5062 66191 atoms, 66796 bonds, 4264 residues, 55 models selected 
    5063 
    5064 > select add #40.34
    5065 
    5066 67401 atoms, 68017 bonds, 4342 residues, 56 models selected 
    5067 
    5068 > select add #40.33
    5069 
    5070 68598 atoms, 69225 bonds, 4419 residues, 57 models selected 
    5071 
    5072 > select add #40.32
    5073 
    5074 69808 atoms, 70446 bonds, 4497 residues, 58 models selected 
    5075 
    5076 > select add #40.31
    5077 
    5078 71018 atoms, 71667 bonds, 4575 residues, 59 models selected 
    5079 
    5080 > select add #40.30
    5081 
    5082 72228 atoms, 72888 bonds, 4653 residues, 60 models selected 
    5083 
    5084 > select add #40.29
    5085 
    5086 73438 atoms, 74109 bonds, 4731 residues, 61 models selected 
    5087 
    5088 > select add #40.28
    5089 
    5090 74635 atoms, 75317 bonds, 4808 residues, 62 models selected 
    5091 
    5092 > select add #40.27
    5093 
    5094 75793 atoms, 76483 bonds, 4883 residues, 63 models selected 
    5095 
    5096 > select add #40.26
    5097 
    5098 76951 atoms, 77649 bonds, 4958 residues, 64 models selected 
    5099 
    5100 > select add #40.25
    5101 
    5102 78109 atoms, 78815 bonds, 5033 residues, 65 models selected 
    5103 
    5104 > select add #40.24
    5105 
    5106 79291 atoms, 80007 bonds, 5109 residues, 66 models selected 
    5107 
    5108 > select add #40.23
    5109 
    5110 80449 atoms, 81173 bonds, 5184 residues, 67 models selected 
    5111 
    5112 > select add #40.22
    5113 
    5114 81519 atoms, 82252 bonds, 1 pseudobond, 5252 residues, 69 models selected 
    5115 
    5116 > select add #40.21
    5117 
    5118 82739 atoms, 83483 bonds, 1 pseudobond, 5331 residues, 70 models selected 
    5119 
    5120 > select add #40.20
    5121 
    5122 83675 atoms, 84425 bonds, 1 pseudobond, 5390 residues, 71 models selected 
    5123 
    5124 > select add #40.19
    5125 
    5126 84623 atoms, 85379 bonds, 1 pseudobond, 5450 residues, 72 models selected 
    5127 
    5128 > select add #40.18
    5129 
    5130 85685 atoms, 86447 bonds, 2 pseudobonds, 5518 residues, 74 models selected 
    5131 
    5132 > color #40.18 #5e5e5eff
    5133 
    5134 > color #40.18 #797979ff
    5135 
    5136 > color sel #797979ff
    5137 
    5138 > hide #40.7 models
    5139 
    5140 > show #40.7 models
    5141 
    5142 > hide #40.7 models
    5143 
    5144 > show #40.7 models
    5145 
    5146 > select add #40.6
    5147 
    5148 89652 atoms, 90466 bonds, 2 pseudobonds, 5775 residues, 75 models selected 
    5149 
    5150 > select clear
    5151 
    5152 > select add #40.6
    5153 
    5154 3967 atoms, 4019 bonds, 257 residues, 1 model selected 
    5155 
    5156 > select add #40.7
    5157 
    5158 5353 atoms, 5417 bonds, 342 residues, 2 models selected 
    5159 
    5160 > select add #40.8
    5161 
    5162 6739 atoms, 6815 bonds, 427 residues, 3 models selected 
    5163 
    5164 > select add #40.9
    5165 
    5166 8249 atoms, 8335 bonds, 516 residues, 4 models selected 
    5167 
    5168 > select add #40.11
    5169 
    5170 9635 atoms, 9725 bonds, 606 residues, 5 models selected 
    5171 
    5172 > select add #40.10
    5173 
    5174 11098 atoms, 11199 bonds, 694 residues, 6 models selected 
    5175 
    5176 > select add #40.12
    5177 
    5178 12607 atoms, 12712 bonds, 789 residues, 7 models selected 
    5179 
    5180 > select add #40.13
    5181 
    5182 14060 atoms, 14168 bonds, 880 residues, 8 models selected 
    5183 
    5184 > select add #40.14
    5185 
    5186 15497 atoms, 15608 bonds, 970 residues, 9 models selected 
    5187 
    5188 > select add #40.15
    5189 
    5190 16883 atoms, 16998 bonds, 1060 residues, 10 models selected 
    5191 
    5192 > select add #40.16
    5193 
    5194 18386 atoms, 18504 bonds, 1151 residues, 11 models selected 
    5195 
    5196 > select add #40.17
    5197 
    5198 19799 atoms, 19916 bonds, 1292 residues, 12 models selected 
    5199 
    5200 > hide #40.17 models
    5201 
    5202 > select subtract #40.17
    5203 
    5204 18386 atoms, 18504 bonds, 1151 residues, 11 models selected 
    5205 
    5206 > color #40.6 #edbbb1ff
    5207 
    5208 > color #40.6 #edb3a7ff
    5209 
    5210 > select add #40.5
    5211 
    5212 21931 atoms, 22087 bonds, 1372 residues, 12 models selected 
    5213 
    5214 > select add #40.4
    5215 
    5216 25514 atoms, 25707 bonds, 1593 residues, 13 models selected 
    5217 
    5218 > select add #40.3
    5219 
    5220 29091 atoms, 29322 bonds, 1816 residues, 14 models selected 
    5221 
    5222 > select add #40.2
    5223 
    5224 32642 atoms, 32911 bonds, 2039 residues, 15 models selected 
    5225 
    5226 > select add #40.1
    5227 
    5228 36343 atoms, 36648 bonds, 2264 residues, 16 models selected 
    5229 
    5230 > color #40.6 #edb19dff
    5231 
    5232 > color sel #edb19dff
    5233 
    5234 > color #40.17 #f90af6ff
    5235 
    5236 > show #40.17 models
    5237 
    5238 > select clear
    5239 
    5240 > select add #40
    5241 
    5242 399559 atoms, 403366 bonds, 17 pseudobonds, 25314 residues, 171 models
    5243 selected 
    5244 
    5245 > show sel surfaces
    5246 
    5247 > select clear
    5248 
    5249 > hide #!40.17 models
    5250 
    5251 > select add #32
    5252 
    5253 24777 atoms, 25101 bonds, 3078 residues, 1 model selected 
    5254 
    5255 > select add #33
    5256 
    5257 24777 atoms, 25101 bonds, 3078 residues, 3 models selected 
    5258 
    5259 > select subtract #33
    5260 
    5261 24777 atoms, 25101 bonds, 3078 residues, 1 model selected 
    5262 
    5263 > select add #28
    5264 
    5265 44384 atoms, 45006 bonds, 18 pseudobonds, 5641 residues, 4 models selected 
    5266 
    5267 > hide sel cartoons
    5268 
    5269 > show sel surfaces
    5270 
    5271 > select clear
    5272 
    5273 > open /Users/shoichitachiyama/Desktop/Shigella-Segment-Meeting/4A4Y.cif
    5274 
    5275 4A4Y.cif title: 
    5276 Structure of the Cytosolic Domain of the Shigella T3SS component MxiG [more
    5277 info...] 
    5278  
    5279 Chain information for 4A4Y.cif #39 
    5280 --- 
    5281 Chain | Description | UniProt 
    5282 A | PROTEIN MXIG | MXIG_SHIFL 1-126 
    5283  
    5284 Non-standard residues in 4A4Y.cif #39 
    5285 --- 
    5286 GOL — glycerol (glycerin; propane-1,2,3-triol) 
    5287  
    5288 100 atoms have alternate locations. Control/examine alternate locations with
    5289 Altloc Explorer [start tool...] or the altlocs command. 
    5290 
    5291 > hide #!39 models
    5292 
    5293 > show #!39 models
    5294 
    5295 > select add #39
    5296 
    5297 1091 atoms, 1054 bonds, 1 pseudobond, 185 residues, 2 models selected 
    5298 
    5299 > ui mousemode right "translate selected models"
    5300 
    5301 > view matrix models #39,1,0,0,121.59,0,1,0,-0.38766,0,0,1,205.7
    5302 
    5303 > view matrix models #39,1,0,0,125.9,0,1,0,-0.60661,0,0,1,354.21
    5304 
    5305 > view matrix models #39,1,0,0,79.325,0,1,0,159.38,0,0,1,348.98
    5306 
    5307 > view matrix models #39,1,0,0,124.74,0,1,0,191.49,0,0,1,334.2
    5308 
    5309 > view matrix models #39,1,0,0,132.74,0,1,0,181.25,0,0,1,335.23
    5310 
    5311 > ui mousemode right "rotate selected models"
    5312 
    5313 > view matrix models
    5314 > #39,0.80186,-0.59339,0.070017,139.61,-0.29606,-0.49637,-0.81607,193.34,0.519,0.63365,-0.5737,320.21
    5315 
    5316 > ui mousemode right "translate selected models"
    5317 
    5318 > view matrix models
    5319 > #39,0.80186,-0.59339,0.070017,147.38,-0.29606,-0.49637,-0.81607,186.12,0.519,0.63365,-0.5737,337.56
    5320 
    5321 > view matrix models
    5322 > #39,0.80186,-0.59339,0.070017,134.67,-0.29606,-0.49637,-0.81607,176.64,0.519,0.63365,-0.5737,338.17
    5323 
    5324 > color #39 #59c1d9ff
    5325 
    5326 > show #!13 models
    5327 
    5328 > view orient
    5329 
    5330 > select ~sel & ##selected
    5331 
    5332 Nothing selected 
    5333 
    5334 > sym #39 C24 copies true center #13
    5335 
    5336 Made 24 copies for 4A4Y.cif symmetry C24 
    5337 
    5338 > turn x 90
    5339 
    5340 > close #41
    5341 
    5342 > show #!39 models
    5343 
    5344 > hide #!13 models
    5345 
    5346 > sym #39 C24 copies true center #33
    5347 
    5348 Made 24 copies for 4A4Y.cif symmetry C24 
    5349 
    5350 > select add #41
    5351 
    5352 26184 atoms, 25296 bonds, 24 pseudobonds, 4440 residues, 49 models selected 
    5353 
    5354 > hide sel cartoons
    5355 
    5356 > show sel surfaces
    5357 
    5358 > view matrix models #41,1,0,0,5.4626,0,1,0,-4.0937e-16,0,0,1,1.2291
    5359 
    5360 > close #41
    5361 
    5362 > show #!39 models
    5363 
    5364 > select add #39
    5365 
    5366 1091 atoms, 1054 bonds, 1 pseudobond, 185 residues, 2 models selected 
    5367 
    5368 > ui mousemode right "rotate selected models"
    5369 
    5370 > view matrix models
    5371 > #39,-0.78199,0.62328,-0.0028015,197.46,0.36456,0.46102,0.80905,147.69,0.50556,0.63165,-0.58774,338.73
    5372 
    5373 > ui mousemode right "translate selected models"
    5374 
    5375 > view matrix models
    5376 > #39,-0.78199,0.62328,-0.0028015,196.6,0.36456,0.46102,0.80905,148.68,0.50556,0.63165,-0.58774,343.98
    5377 
    5378 > sym #39 C24 copies true center #33
    5379 
    5380 Made 24 copies for 4A4Y.cif symmetry C24 
    5381 
    5382 > select subtract #39
    5383 
    5384 Nothing selected 
    5385 
    5386 > select add #41
    5387 
    5388 26184 atoms, 25296 bonds, 24 pseudobonds, 4440 residues, 49 models selected 
    5389 
    5390 > show sel surfaces
    5391 
    5392 > close #41
    5393 
    5394 > show #!39 models
    5395 
    5396 > select add #39
    5397 
    5398 1091 atoms, 1054 bonds, 1 pseudobond, 185 residues, 2 models selected 
    5399 
    5400 > view matrix models
    5401 > #39,-0.78199,0.62328,-0.0028015,212.41,0.36456,0.46102,0.80905,162.09,0.50556,0.63165,-0.58774,341.94
    5402 
    5403 > sym #39 C24 copies true center #33
    5404 
    5405 Made 24 copies for 4A4Y.cif symmetry C24 
    5406 
    5407 > select subtract #39
    5408 
    5409 Nothing selected 
    5410 
    5411 > select add #41
    5412 
    5413 26184 atoms, 25296 bonds, 24 pseudobonds, 4440 residues, 49 models selected 
    5414 
    5415 > show sel surfaces
    5416 
    5417 > hide sel cartoons
    5418 
    5419 > select clear
    5420 
    5421 > show #!9 models
    5422 
    5423 > volume #14 region 0,0,0,200,200,200
    5424 
    5425 > volume #9 region 0,0,0,200,200,200
    5426 
    5427 > view orient
    5428 
    5429 > turn x 90
    5430 
    5431 > turn y 10
    5432 
    5433 > turn y -10
    5434 
    5435 > turn z 0.1
    5436 
    5437 > turn z -0.1
    5438 
    5439 > view name P1
    5440 
    5441 > save /Users/shoichitachiyama/Desktop/Shigella-Segment-
    5442 > Meeting/Figure_09212025.cxs includeMaps true
    5443 
    5444 > save /Users/shoichitachiyama/Desktop/T3SS.png supersample 2
    5445 > transparentBackground true
    5446 
    5447 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Lab Slides/Lab
    5448 > Meeting/2025/Sep_2025/CJ_Whole_models.cxs"
    5449 
    5450 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    5451 level 0.0137, step 1, values float32 
    5452 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    5453 step 1, values float32 
    5454 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    5455 level 0.0137, step 1, values float32 
    5456 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    5457 level 0.0137, step 1, values float32 
    5458 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    5459 level 0.027, step 1, values float32 
    5460 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    5461 step 1, values float32 
    5462 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    5463 level 0.0166, step 1, values float32 
    5464 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    5465 pixel 2.14, shown at level 0.000576, step 1, values float32 
    5466 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    5467 pixel 2.14, shown at level 0.000576, step 1, values float32 
    5468 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    5469 pixel 2.14, shown at level 0.000576, step 1, values float32 
    5470 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    5471 pixel 2.14, shown at level 0.000576, step 1, values float32 
    5472 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    5473 pixel 2.14, shown at level 0.000576, step 1, values float32 
    5474 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    5475 pixel 2.14, shown at level 0.000576, step 1, values float32 
    5476 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    5477 pixel 2.14, shown at level 0.000576, step 1, values float32 
    5478 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    5479 pixel 2.14, shown at level 0.000576, step 1, values float32 
    5480 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    5481 pixel 2.14, shown at level 0.000576, step 1, values float32 
    5482 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    5483 pixel 2.14, shown at level 0.000576, step 1, values float32 
    5484 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    5485 pixel 2.14, shown at level 0.000576, step 1, values float32 
    5486 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    5487 pixel 2.14, shown at level 0.000576, step 1, values float32 
    5488 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    5489 pixel 2.14, shown at level 0.000576, step 1, values float32 
    5490 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    5491 pixel 2.14, shown at level 0.000576, step 1, values float32 
    5492 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    5493 pixel 2.14, shown at level 0.000576, step 1, values float32 
    5494 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    5495 pixel 2.14, shown at level 0.000576, step 1, values float32 
    5496 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    5497 pixel 2.14, shown at level 0.000576, step 1, values float32 
    5498 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    5499 pixel 2.14, shown at level 0.000793, step 1, values float32 
    5500 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    5501 pixel 2.14, shown at level 0.000793, step 1, values float32 
    5502 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    5503 pixel 2.14, shown at level 0.000793, step 1, values float32 
    5504 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    5505 pixel 2.14, shown at level 0.000793, step 1, values float32 
    5506 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    5507 pixel 2.14, shown at level 0.000793, step 1, values float32 
    5508 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    5509 pixel 2.14, shown at level 0.000793, step 1, values float32 
    5510 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    5511 pixel 2.14, shown at level 0.000793, step 1, values float32 
    5512 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    5513 pixel 2.14, shown at level 0.000793, step 1, values float32 
    5514 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    5515 pixel 2.14, shown at level 0.000793, step 1, values float32 
    5516 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    5517 pixel 2.14, shown at level 0.000793, step 1, values float32 
    5518 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    5519 pixel 2.14, shown at level 0.000793, step 1, values float32 
    5520 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    5521 pixel 2.14, shown at level 0.000793, step 1, values float32 
    5522 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    5523 pixel 2.14, shown at level 0.000793, step 1, values float32 
    5524 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    5525 pixel 2.14, shown at level 0.000793, step 1, values float32 
    5526 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    5527 pixel 2.14, shown at level 0.000793, step 1, values float32 
    5528 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    5529 pixel 2.14, shown at level 0.000793, step 1, values float32 
    5530 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    5531 pixel 2.14, shown at level 0.000793, step 1, values float32 
    5532 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    5533 shown at level 0.000785, step 1, values float32 
    5534 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    5535 shown at level 0.000785, step 1, values float32 
    5536 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    5537 shown at level 0.000785, step 1, values float32 
    5538 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    5539 shown at level 0.000785, step 1, values float32 
    5540 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    5541 shown at level 0.000785, step 1, values float32 
    5542 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    5543 shown at level 0.000785, step 1, values float32 
    5544 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    5545 shown at level 0.000785, step 1, values float32 
    5546 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    5547 shown at level 0.000785, step 1, values float32 
    5548 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    5549 shown at level 0.000785, step 1, values float32 
    5550 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    5551 shown at level 0.000785, step 1, values float32 
    5552 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    5553 shown at level 0.000785, step 1, values float32 
    5554 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    5555 shown at level 0.000785, step 1, values float32 
    5556 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    5557 shown at level 0.000785, step 1, values float32 
    5558 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    5559 shown at level 0.000785, step 1, values float32 
    5560 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    5561 shown at level 0.000785, step 1, values float32 
    5562 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    5563 shown at level 0.000785, step 1, values float32 
    5564 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    5565 shown at level 0.000785, step 1, values float32 
    5566 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    5567 shown at level 0.00107, step 1, values float32 
    5568 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    5569 shown at level 0.00107, step 1, values float32 
    5570 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    5571 shown at level 0.00107, step 1, values float32 
    5572 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    5573 shown at level 0.00107, step 1, values float32 
    5574 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    5575 shown at level 0.00107, step 1, values float32 
    5576 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    5577 shown at level 0.00107, step 1, values float32 
    5578 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    5579 shown at level 0.00107, step 1, values float32 
    5580 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    5581 shown at level 0.00107, step 1, values float32 
    5582 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    5583 shown at level 0.00107, step 1, values float32 
    5584 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    5585 shown at level 0.00107, step 1, values float32 
    5586 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    5587 shown at level 0.00107, step 1, values float32 
    5588 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    5589 shown at level 0.00107, step 1, values float32 
    5590 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    5591 shown at level 0.00107, step 1, values float32 
    5592 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    5593 shown at level 0.00107, step 1, values float32 
    5594 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    5595 shown at level 0.00107, step 1, values float32 
    5596 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    5597 shown at level 0.00107, step 1, values float32 
    5598 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    5599 shown at level 0.00107, step 1, values float32 
    5600 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    5601 shown at level 0.000848, step 1, values float32 
    5602 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    5603 shown at level 0.000848, step 1, values float32 
    5604 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    5605 shown at level 0.000848, step 1, values float32 
    5606 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    5607 shown at level 0.000848, step 1, values float32 
    5608 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    5609 shown at level 0.000848, step 1, values float32 
    5610 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    5611 shown at level 0.000848, step 1, values float32 
    5612 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    5613 shown at level 0.000848, step 1, values float32 
    5614 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    5615 shown at level 0.000848, step 1, values float32 
    5616 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    5617 shown at level 0.000848, step 1, values float32 
    5618 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    5619 shown at level 0.000848, step 1, values float32 
    5620 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    5621 shown at level 0.000848, step 1, values float32 
    5622 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    5623 shown at level 0.000848, step 1, values float32 
    5624 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    5625 shown at level 0.000848, step 1, values float32 
    5626 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    5627 shown at level 0.000848, step 1, values float32 
    5628 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    5629 shown at level 0.000848, step 1, values float32 
    5630 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    5631 shown at level 0.000848, step 1, values float32 
    5632 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    5633 shown at level 0.000848, step 1, values float32 
    5634 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    5635 2.14, shown at level 0.000997, step 1, values float32 
    5636 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    5637 pixel 2.14, shown at level 0.000997, step 1, values float32 
    5638 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    5639 pixel 2.14, shown at level 0.000997, step 1, values float32 
    5640 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    5641 pixel 2.14, shown at level 0.000997, step 1, values float32 
    5642 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    5643 pixel 2.14, shown at level 0.000997, step 1, values float32 
    5644 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    5645 pixel 2.14, shown at level 0.000997, step 1, values float32 
    5646 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    5647 pixel 2.14, shown at level 0.000997, step 1, values float32 
    5648 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    5649 pixel 2.14, shown at level 0.000997, step 1, values float32 
    5650 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    5651 pixel 2.14, shown at level 0.000997, step 1, values float32 
    5652 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    5653 pixel 2.14, shown at level 0.000997, step 1, values float32 
    5654 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    5655 pixel 2.14, shown at level 0.000997, step 1, values float32 
    5656 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    5657 pixel 2.14, shown at level 0.000997, step 1, values float32 
    5658 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    5659 pixel 2.14, shown at level 0.000997, step 1, values float32 
    5660 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    5661 pixel 2.14, shown at level 0.000997, step 1, values float32 
    5662 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    5663 pixel 2.14, shown at level 0.000997, step 1, values float32 
    5664 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    5665 pixel 2.14, shown at level 0.000997, step 1, values float32 
    5666 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    5667 pixel 2.14, shown at level 0.000997, step 1, values float32 
    5668 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    5669 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    5670 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    5671 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    5672 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    5673 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    5674 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    5675 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    5676 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    5677 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    5678 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    5679 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    5680 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    5681 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    5682 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    5683 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    5684 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    5685 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    5686 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    5687 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    5688 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    5689 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    5690 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    5691 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    5692 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    5693 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    5694 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    5695 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    5696 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    5697 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    5698 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    5699 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    5700 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    5701 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    5702 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    5703 shown at level 0.0112, step 1, values float32 
    5704 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    5705 2.14, shown at level 0.00974, step 1, values float32 
    5706 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    5707 level 0.157, step 1, values float32 
    5708 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    5709 0.0283, step 1, values float32 
    5710 Opened 1unit_PflABCD.mrc as #5, grid size 200,200,200, pixel 2.14, shown at
    5711 level 0.00404, step 1, values float32 
    5712 Opened PflAB_wout_FlgYoverlap_imasked as #18, grid size 200,200,200, pixel
    5713 2.14, shown at level 0.00045, step 1, values float32 
    5714 Opened PflC-only-Model-area.mrc as #19, grid size 200,200,200, pixel 2.14,
    5715 shown at level 0.00107, step 1, values float32 
    5716 Opened PflC-only-Model-area.mrc copy as #20, grid size 200,200,200, pixel
    5717 2.14, shown at level 0.00107, step 1, values float32 
    5718 Opened PflC-only-Model-area.mrc copy as #21, grid size 200,200,200, pixel
    5719 2.14, shown at level 0.00107, step 1, values float32 
    5720 Opened PflC-only-Model-area.mrc copy as #22, grid size 200,200,200, pixel
    5721 2.14, shown at level 0.00107, step 1, values float32 
    5722 Opened PflC-only-Model-area.mrc copy as #23, grid size 200,200,200, pixel
    5723 2.14, shown at level 0.00107, step 1, values float32 
    5724 Opened PflC-only-Model-area.mrc copy as #24, grid size 200,200,200, pixel
    5725 2.14, shown at level 0.00107, step 1, values float32 
    5726 Opened PflC-only-Model-area.mrc copy as #25, grid size 200,200,200, pixel
    5727 2.14, shown at level 0.00107, step 1, values float32 
    5728 Opened PflC-only-Model-area.mrc copy as #26, grid size 200,200,200, pixel
    5729 2.14, shown at level 0.00107, step 1, values float32 
    5730 Opened PflC-only-Model-area.mrc copy as #27, grid size 200,200,200, pixel
    5731 2.14, shown at level 0.00107, step 1, values float32 
    5732 Opened PflC-only-Model-area.mrc copy as #28, grid size 200,200,200, pixel
    5733 2.14, shown at level 0.00107, step 1, values float32 
    5734 Opened PflC-only-Model-area.mrc copy as #29, grid size 200,200,200, pixel
    5735 2.14, shown at level 0.00107, step 1, values float32 
    5736 Opened PflC-only-Model-area.mrc copy as #30, grid size 200,200,200, pixel
    5737 2.14, shown at level 0.00107, step 1, values float32 
    5738 Opened PflC-only-Model-area.mrc copy as #31, grid size 200,200,200, pixel
    5739 2.14, shown at level 0.00107, step 1, values float32 
    5740 Opened PflC-only-Model-area.mrc copy as #32, grid size 200,200,200, pixel
    5741 2.14, shown at level 0.00107, step 1, values float32 
    5742 Opened PflC-only-Model-area.mrc copy as #33, grid size 200,200,200, pixel
    5743 2.14, shown at level 0.00107, step 1, values float32 
    5744 Opened PflC-only-Model-area.mrc copy as #34, grid size 200,200,200, pixel
    5745 2.14, shown at level 0.00107, step 1, values float32 
    5746 Opened PflC-only-Model-area.mrc copy as #35, grid size 200,200,200, pixel
    5747 2.14, shown at level 0.00107, step 1, values float32 
    5748 Opened PflC-only-Model-area.mrc copy as #36, grid size 200,200,200, pixel
    5749 2.14, shown at level 0.00107, step 1, values float32 
    5750 Opened FlgV-ring.mrc as #37, grid size 200,200,120, pixel 4.3,4.3,4.3, shown
    5751 at level 0.0486, step 1, values float32 
    5752 Opened C-ring.mrc as #38, grid size 250,250,250, pixel 4.3, shown at level
    5753 0.0283, step 1, values float32 
    5754 
    5755 > set bgColor transparent
    5756 
    5757 opened ChimeraX session 
    5758 Showing C-Vrings.seg - 65 regions, 65 surfaces 
    5759 
    5760 > hide #!17 models
    5761 
    5762 > close #17
    5763 
    5764 > select add #40
    5765 
    5766 116020 atoms, 117640 bonds, 14440 residues, 1 model selected 
    5767 
    5768 > select subtract #40
    5769 
    5770 Nothing selected 
    5771 
    5772 > show #!13 models
    5773 
    5774 > show #!14 models
    5775 
    5776 > show #!15 models
    5777 
    5778 > show #16 models
    5779 
    5780 > show #!209 models
    5781 
    5782 > hide #!89 models
    5783 
    5784 > hide #40 models
    5785 
    5786 > hide #!37 models
    5787 
    5788 > hide #!13 models
    5789 
    5790 > hide #!14 models
    5791 
    5792 > hide #!15 models
    5793 
    5794 > hide #16 models
    5795 
    5796 > show #!13 models
    5797 
    5798 > show #!14 models
    5799 
    5800 > show #!15 models
    5801 
    5802 > show #40 models
    5803 
    5804 > show #16 models
    5805 
    5806 > close session
    5807 
    5808 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    5809 > files/Shigella/Sean_Spa33_mutants/09172025/C-ring/8uox_for_Shigella/8UOX.cif"
    5810 
    5811 8UOX.cif title: 
    5812 Cryo-EM structure of a Counterclockwise locked form of the Salmonella enterica
    5813 Typhimurium flagellar C-ring, with C34 symmetry applied [more info...] 
    5814  
    5815 Chain information for 8UOX.cif #1 
    5816 --- 
    5817 Chain | Description | UniProt 
    5818 A1 A2 A3 A4 A5 A6 A7 A8 A9 AA AB AC AD AE AF AG AH AI AJ AK AL AM AN AO AP AQ AR AS AT AU AV AW AX AY | Flagellar M-ring protein | FLIF_SALTY 1-560 
    5819 B1 B2 B3 B4 B5 B6 B7 B8 B9 BA BB BC BD BE BF BG BH BI BJ BK BL BM BN BO BP BQ BR BS BT BU BV BW BX BY | Flagellar motor switch protein FliG | FLIG_SALTY 1-331 
    5820 C1 C2 C3 C4 C5 C6 C7 C8 C9 CA CB CC CD CE CF CG CH CI CJ CK CL CM CN CO CP CQ CR CS CT CU CV CW CX CY | Flagellar motor switch protein FliM | FLIM_SALTY 1-334 
    5821 D1 D2 D3 D4 D5 D6 D7 D8 D9 DA DB DC DD DE DF DG DH DI DJ DK DL DM DN DO DP DQ DR DS DT DU DV DW DX DY E1 E2 E3 E4 E5 E6 E7 E8 E9 EA EB EC ED EE EF EG EH EI EJ EK EL EM EN EO EP EQ ER ES ET EU EV EW EX EY F1 F2 F3 F4 F5 F6 F7 F8 F9 FA FB FC FD FE FF FG FH FI FJ FK FL FM FN FO FP FQ FR FS FT FU FV FW FX FY | Flagellar motor switch protein FliN | FLIN_SALTY 1-137 
    5822  
    5823 
    5824 > select add #1
    5825 
    5826 244834 atoms, 247860 bonds, 30974 residues, 1 model selected 
    5827 
    5828 > hide sel atoms
    5829 
    5830 > show sel cartoons
    5831 
    5832 > split #1
    5833 
    5834 Split 8UOX.cif (#1) into 204 models 
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    5880 Chain information for 8UOX.cif AA #1.10 
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    5884  
    5885 Chain information for 8UOX.cif AB #1.11 
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    5889  
    5890 Chain information for 8UOX.cif AC #1.12 
    5891 --- 
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    5894  
    5895 Chain information for 8UOX.cif AD #1.13 
    5896 --- 
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    5899  
    5900 Chain information for 8UOX.cif AE #1.14 
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    5905 Chain information for 8UOX.cif AF #1.15 
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    5910 Chain information for 8UOX.cif AG #1.16 
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    5915 Chain information for 8UOX.cif AH #1.17 
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    5920 Chain information for 8UOX.cif AI #1.18 
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    5925 Chain information for 8UOX.cif AJ #1.19 
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    5975 Chain information for 8UOX.cif AT #1.29 
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    6419  
    6420 Chain information for 8UOX.cif DG #1.118 
    6421 --- 
    6422 Chain | Description 
    6423 DG | No description available 
    6424  
    6425 Chain information for 8UOX.cif DH #1.119 
    6426 --- 
    6427 Chain | Description 
    6428 DH | No description available 
    6429  
    6430 Chain information for 8UOX.cif DI #1.120 
    6431 --- 
    6432 Chain | Description 
    6433 DI | No description available 
    6434  
    6435 Chain information for 8UOX.cif DJ #1.121 
    6436 --- 
    6437 Chain | Description 
    6438 DJ | No description available 
    6439  
    6440 Chain information for 8UOX.cif DK #1.122 
    6441 --- 
    6442 Chain | Description 
    6443 DK | No description available 
    6444  
    6445 Chain information for 8UOX.cif DL #1.123 
    6446 --- 
    6447 Chain | Description 
    6448 DL | No description available 
    6449  
    6450 Chain information for 8UOX.cif DM #1.124 
    6451 --- 
    6452 Chain | Description 
    6453 DM | No description available 
    6454  
    6455 Chain information for 8UOX.cif DN #1.125 
    6456 --- 
    6457 Chain | Description 
    6458 DN | No description available 
    6459  
    6460 Chain information for 8UOX.cif DO #1.126 
    6461 --- 
    6462 Chain | Description 
    6463 DO | No description available 
    6464  
    6465 Chain information for 8UOX.cif DP #1.127 
    6466 --- 
    6467 Chain | Description 
    6468 DP | No description available 
    6469  
    6470 Chain information for 8UOX.cif DQ #1.128 
    6471 --- 
    6472 Chain | Description 
    6473 DQ | No description available 
    6474  
    6475 Chain information for 8UOX.cif DR #1.129 
    6476 --- 
    6477 Chain | Description 
    6478 DR | No description available 
    6479  
    6480 Chain information for 8UOX.cif DS #1.130 
    6481 --- 
    6482 Chain | Description 
    6483 DS | No description available 
    6484  
    6485 Chain information for 8UOX.cif DT #1.131 
    6486 --- 
    6487 Chain | Description 
    6488 DT | No description available 
    6489  
    6490 Chain information for 8UOX.cif DU #1.132 
    6491 --- 
    6492 Chain | Description 
    6493 DU | No description available 
    6494  
    6495 Chain information for 8UOX.cif DV #1.133 
    6496 --- 
    6497 Chain | Description 
    6498 DV | No description available 
    6499  
    6500 Chain information for 8UOX.cif DW #1.134 
    6501 --- 
    6502 Chain | Description 
    6503 DW | No description available 
    6504  
    6505 Chain information for 8UOX.cif DX #1.135 
    6506 --- 
    6507 Chain | Description 
    6508 DX | No description available 
    6509  
    6510 Chain information for 8UOX.cif DY #1.136 
    6511 --- 
    6512 Chain | Description 
    6513 DY | No description available 
    6514  
    6515 Chain information for 8UOX.cif E1 #1.137 
    6516 --- 
    6517 Chain | Description 
    6518 E1 | No description available 
    6519  
    6520 Chain information for 8UOX.cif E2 #1.138 
    6521 --- 
    6522 Chain | Description 
    6523 E2 | No description available 
    6524  
    6525 Chain information for 8UOX.cif E3 #1.139 
    6526 --- 
    6527 Chain | Description 
    6528 E3 | No description available 
    6529  
    6530 Chain information for 8UOX.cif E4 #1.140 
    6531 --- 
    6532 Chain | Description 
    6533 E4 | No description available 
    6534  
    6535 Chain information for 8UOX.cif E5 #1.141 
    6536 --- 
    6537 Chain | Description 
    6538 E5 | No description available 
    6539  
    6540 Chain information for 8UOX.cif E6 #1.142 
    6541 --- 
    6542 Chain | Description 
    6543 E6 | No description available 
    6544  
    6545 Chain information for 8UOX.cif E7 #1.143 
    6546 --- 
    6547 Chain | Description 
    6548 E7 | No description available 
    6549  
    6550 Chain information for 8UOX.cif E8 #1.144 
    6551 --- 
    6552 Chain | Description 
    6553 E8 | No description available 
    6554  
    6555 Chain information for 8UOX.cif E9 #1.145 
    6556 --- 
    6557 Chain | Description 
    6558 E9 | No description available 
    6559  
    6560 Chain information for 8UOX.cif EA #1.146 
    6561 --- 
    6562 Chain | Description 
    6563 EA | No description available 
    6564  
    6565 Chain information for 8UOX.cif EB #1.147 
    6566 --- 
    6567 Chain | Description 
    6568 EB | No description available 
    6569  
    6570 Chain information for 8UOX.cif EC #1.148 
    6571 --- 
    6572 Chain | Description 
    6573 EC | No description available 
    6574  
    6575 Chain information for 8UOX.cif ED #1.149 
    6576 --- 
    6577 Chain | Description 
    6578 ED | No description available 
    6579  
    6580 Chain information for 8UOX.cif EE #1.150 
    6581 --- 
    6582 Chain | Description 
    6583 EE | No description available 
    6584  
    6585 Chain information for 8UOX.cif EF #1.151 
    6586 --- 
    6587 Chain | Description 
    6588 EF | No description available 
    6589  
    6590 Chain information for 8UOX.cif EG #1.152 
    6591 --- 
    6592 Chain | Description 
    6593 EG | No description available 
    6594  
    6595 Chain information for 8UOX.cif EH #1.153 
    6596 --- 
    6597 Chain | Description 
    6598 EH | No description available 
    6599  
    6600 Chain information for 8UOX.cif EI #1.154 
    6601 --- 
    6602 Chain | Description 
    6603 EI | No description available 
    6604  
    6605 Chain information for 8UOX.cif EJ #1.155 
    6606 --- 
    6607 Chain | Description 
    6608 EJ | No description available 
    6609  
    6610 Chain information for 8UOX.cif EK #1.156 
    6611 --- 
    6612 Chain | Description 
    6613 EK | No description available 
    6614  
    6615 Chain information for 8UOX.cif EL #1.157 
    6616 --- 
    6617 Chain | Description 
    6618 EL | No description available 
    6619  
    6620 Chain information for 8UOX.cif EM #1.158 
    6621 --- 
    6622 Chain | Description 
    6623 EM | No description available 
    6624  
    6625 Chain information for 8UOX.cif EN #1.159 
    6626 --- 
    6627 Chain | Description 
    6628 EN | No description available 
    6629  
    6630 Chain information for 8UOX.cif EO #1.160 
    6631 --- 
    6632 Chain | Description 
    6633 EO | No description available 
    6634  
    6635 Chain information for 8UOX.cif EP #1.161 
    6636 --- 
    6637 Chain | Description 
    6638 EP | No description available 
    6639  
    6640 Chain information for 8UOX.cif EQ #1.162 
    6641 --- 
    6642 Chain | Description 
    6643 EQ | No description available 
    6644  
    6645 Chain information for 8UOX.cif ER #1.163 
    6646 --- 
    6647 Chain | Description 
    6648 ER | No description available 
    6649  
    6650 Chain information for 8UOX.cif ES #1.164 
    6651 --- 
    6652 Chain | Description 
    6653 ES | No description available 
    6654  
    6655 Chain information for 8UOX.cif ET #1.165 
    6656 --- 
    6657 Chain | Description 
    6658 ET | No description available 
    6659  
    6660 Chain information for 8UOX.cif EU #1.166 
    6661 --- 
    6662 Chain | Description 
    6663 EU | No description available 
    6664  
    6665 Chain information for 8UOX.cif EV #1.167 
    6666 --- 
    6667 Chain | Description 
    6668 EV | No description available 
    6669  
    6670 Chain information for 8UOX.cif EW #1.168 
    6671 --- 
    6672 Chain | Description 
    6673 EW | No description available 
    6674  
    6675 Chain information for 8UOX.cif EX #1.169 
    6676 --- 
    6677 Chain | Description 
    6678 EX | No description available 
    6679  
    6680 Chain information for 8UOX.cif EY #1.170 
    6681 --- 
    6682 Chain | Description 
    6683 EY | No description available 
    6684  
    6685 Chain information for 8UOX.cif F1 #1.171 
    6686 --- 
    6687 Chain | Description 
    6688 F1 | No description available 
    6689  
    6690 Chain information for 8UOX.cif F2 #1.172 
    6691 --- 
    6692 Chain | Description 
    6693 F2 | No description available 
    6694  
    6695 Chain information for 8UOX.cif F3 #1.173 
    6696 --- 
    6697 Chain | Description 
    6698 F3 | No description available 
    6699  
    6700 Chain information for 8UOX.cif F4 #1.174 
    6701 --- 
    6702 Chain | Description 
    6703 F4 | No description available 
    6704  
    6705 Chain information for 8UOX.cif F5 #1.175 
    6706 --- 
    6707 Chain | Description 
    6708 F5 | No description available 
    6709  
    6710 Chain information for 8UOX.cif F6 #1.176 
    6711 --- 
    6712 Chain | Description 
    6713 F6 | No description available 
    6714  
    6715 Chain information for 8UOX.cif F7 #1.177 
    6716 --- 
    6717 Chain | Description 
    6718 F7 | No description available 
    6719  
    6720 Chain information for 8UOX.cif F8 #1.178 
    6721 --- 
    6722 Chain | Description 
    6723 F8 | No description available 
    6724  
    6725 Chain information for 8UOX.cif F9 #1.179 
    6726 --- 
    6727 Chain | Description 
    6728 F9 | No description available 
    6729  
    6730 Chain information for 8UOX.cif FA #1.180 
    6731 --- 
    6732 Chain | Description 
    6733 FA | No description available 
    6734  
    6735 Chain information for 8UOX.cif FB #1.181 
    6736 --- 
    6737 Chain | Description 
    6738 FB | No description available 
    6739  
    6740 Chain information for 8UOX.cif FC #1.182 
    6741 --- 
    6742 Chain | Description 
    6743 FC | No description available 
    6744  
    6745 Chain information for 8UOX.cif FD #1.183 
    6746 --- 
    6747 Chain | Description 
    6748 FD | No description available 
    6749  
    6750 Chain information for 8UOX.cif FE #1.184 
    6751 --- 
    6752 Chain | Description 
    6753 FE | No description available 
    6754  
    6755 Chain information for 8UOX.cif FF #1.185 
    6756 --- 
    6757 Chain | Description 
    6758 FF | No description available 
    6759  
    6760 Chain information for 8UOX.cif FG #1.186 
    6761 --- 
    6762 Chain | Description 
    6763 FG | No description available 
    6764  
    6765 Chain information for 8UOX.cif FH #1.187 
    6766 --- 
    6767 Chain | Description 
    6768 FH | No description available 
    6769  
    6770 Chain information for 8UOX.cif FI #1.188 
    6771 --- 
    6772 Chain | Description 
    6773 FI | No description available 
    6774  
    6775 Chain information for 8UOX.cif FJ #1.189 
    6776 --- 
    6777 Chain | Description 
    6778 FJ | No description available 
    6779  
    6780 Chain information for 8UOX.cif FK #1.190 
    6781 --- 
    6782 Chain | Description 
    6783 FK | No description available 
    6784  
    6785 Chain information for 8UOX.cif FL #1.191 
    6786 --- 
    6787 Chain | Description 
    6788 FL | No description available 
    6789  
    6790 Chain information for 8UOX.cif FM #1.192 
    6791 --- 
    6792 Chain | Description 
    6793 FM | No description available 
    6794  
    6795 Chain information for 8UOX.cif FN #1.193 
    6796 --- 
    6797 Chain | Description 
    6798 FN | No description available 
    6799  
    6800 Chain information for 8UOX.cif FO #1.194 
    6801 --- 
    6802 Chain | Description 
    6803 FO | No description available 
    6804  
    6805 Chain information for 8UOX.cif FP #1.195 
    6806 --- 
    6807 Chain | Description 
    6808 FP | No description available 
    6809  
    6810 Chain information for 8UOX.cif FQ #1.196 
    6811 --- 
    6812 Chain | Description 
    6813 FQ | No description available 
    6814  
    6815 Chain information for 8UOX.cif FR #1.197 
    6816 --- 
    6817 Chain | Description 
    6818 FR | No description available 
    6819  
    6820 Chain information for 8UOX.cif FS #1.198 
    6821 --- 
    6822 Chain | Description 
    6823 FS | No description available 
    6824  
    6825 Chain information for 8UOX.cif FT #1.199 
    6826 --- 
    6827 Chain | Description 
    6828 FT | No description available 
    6829  
    6830 Chain information for 8UOX.cif FU #1.200 
    6831 --- 
    6832 Chain | Description 
    6833 FU | No description available 
    6834  
    6835 Chain information for 8UOX.cif FV #1.201 
    6836 --- 
    6837 Chain | Description 
    6838 FV | No description available 
    6839  
    6840 Chain information for 8UOX.cif FW #1.202 
    6841 --- 
    6842 Chain | Description 
    6843 FW | No description available 
    6844  
    6845 Chain information for 8UOX.cif FX #1.203 
    6846 --- 
    6847 Chain | Description 
    6848 FX | No description available 
    6849  
    6850 Chain information for 8UOX.cif FY #1.204 
    6851 --- 
    6852 Chain | Description 
    6853 FY | No description available 
    6854  
    6855 
    6856 > select add #1.1
    6857 
    6858 393 atoms, 396 bonds, 47 residues, 1 model selected 
    6859 
    6860 > select add #1.2
    6861 
    6862 786 atoms, 792 bonds, 94 residues, 2 models selected 
    6863 
    6864 > select add #1.3
    6865 
    6866 1179 atoms, 1188 bonds, 141 residues, 3 models selected 
    6867 
    6868 > select add #1.4
    6869 
    6870 1572 atoms, 1584 bonds, 188 residues, 4 models selected 
    6871 
    6872 > close #1.4-34
    6873 
    6874 > close #1.1-3
    6875 
    6876 > select add #1.35
    6877 
    6878 2583 atoms, 2604 bonds, 331 residues, 1 model selected 
    6879 
    6880 > select add #1.69
    6881 
    6882 4931 atoms, 5005 bonds, 621 residues, 2 models selected 
    6883 
    6884 > select add #1.103
    6885 
    6886 5556 atoms, 5634 bonds, 702 residues, 3 models selected 
    6887 
    6888 > select add #1.104
    6889 
    6890 6181 atoms, 6263 bonds, 783 residues, 4 models selected 
    6891 
    6892 > select subtract #1.104
    6893 
    6894 5556 atoms, 5634 bonds, 702 residues, 3 models selected 
    6895 
    6896 > hide #1.69 models
    6897 
    6898 > select add #1.171
    6899 
    6900 6183 atoms, 6265 bonds, 783 residues, 4 models selected 
    6901 
    6902 > hide #1.171 models
    6903 
    6904 > show #1.171 models
    6905 
    6906 > hide #1.171 models
    6907 
    6908 > hide #1.137 models
    6909 
    6910 > select add #1.137
    6911 
    6912 6808 atoms, 6894 bonds, 864 residues, 5 models selected 
    6913 
    6914 > hide #1.103 models
    6915 
    6916 > show #1.103 models
    6917 
    6918 > close #1.36-68
    6919 
    6920 > close #1.70-102
    6921 
    6922 > close #1.104-136
    6923 
    6924 > show #1.69 models
    6925 
    6926 > show #1.137 models
    6927 
    6928 > close #1.138-170
    6929 
    6930 > show #1.171 models
    6931 
    6932 > close #1.172-204
    6933 
    6934 > save /Users/shoichitachiyama/Desktop/Shigella-Segment-Meeting/8uox-mono.pdb
    6935 > selectedOnly true
    6936 
    6937 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    6938 > files/Shigella/Sean_Spa33_mutants/09172025/C-ring/8uox_for_Shigella/8UOX.cif"
    6939 
    6940 8UOX.cif title: 
    6941 Cryo-EM structure of a Counterclockwise locked form of the Salmonella enterica
    6942 Typhimurium flagellar C-ring, with C34 symmetry applied [more info...] 
    6943  
    6944 Chain information for 8UOX.cif #2 
    6945 --- 
    6946 Chain | Description | UniProt 
    6947 A1 A2 A3 A4 A5 A6 A7 A8 A9 AA AB AC AD AE AF AG AH AI AJ AK AL AM AN AO AP AQ AR AS AT AU AV AW AX AY | Flagellar M-ring protein | FLIF_SALTY 1-560 
    6948 B1 B2 B3 B4 B5 B6 B7 B8 B9 BA BB BC BD BE BF BG BH BI BJ BK BL BM BN BO BP BQ BR BS BT BU BV BW BX BY | Flagellar motor switch protein FliG | FLIG_SALTY 1-331 
    6949 C1 C2 C3 C4 C5 C6 C7 C8 C9 CA CB CC CD CE CF CG CH CI CJ CK CL CM CN CO CP CQ CR CS CT CU CV CW CX CY | Flagellar motor switch protein FliM | FLIM_SALTY 1-334 
    6950 D1 D2 D3 D4 D5 D6 D7 D8 D9 DA DB DC DD DE DF DG DH DI DJ DK DL DM DN DO DP DQ DR DS DT DU DV DW DX DY E1 E2 E3 E4 E5 E6 E7 E8 E9 EA EB EC ED EE EF EG EH EI EJ EK EL EM EN EO EP EQ ER ES ET EU EV EW EX EY F1 F2 F3 F4 F5 F6 F7 F8 F9 FA FB FC FD FE FF FG FH FI FJ FK FL FM FN FO FP FQ FR FS FT FU FV FW FX FY | Flagellar motor switch protein FliN | FLIN_SALTY 1-137 
    6951  
    6952 
    6953 > select add #2
    6954 
    6955 251642 atoms, 254754 bonds, 31838 residues, 6 models selected 
    6956 
    6957 > hide sel atoms
    6958 
    6959 > show sel cartoons
    6960 
    6961 > hide #2 models
    6962 
    6963 > show #2 models
    6964 
    6965 > hide #2 models
    6966 
    6967 > show #2 models
    6968 
    6969 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    6970 > files/C.jejuni/2nd_paper/For-2nd-manuscript/Start_Aug_2024/Local-ref-
    6971 > PflAB/For-chimera/cyc3/Segments/Basal-disk.mrc"
    6972 
    6973 Opened Basal-disk.mrc as #3, grid size 220,250,200, pixel 2.15,2.15,2.15,
    6974 shown at level 0.0247, step 1, values float32 
    6975 
    6976 > close #3
    6977 
    6978 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    6979 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    6980 > refinment/For-Chimera-PflAB/Resegment/Part1/Basal-disk.mrc"
    6981 
    6982 Opened Basal-disk.mrc as #3, grid size 200,200,200, pixel 2.14, shown at level
    6983 0.0125, step 1, values float32 
    6984 
    6985 > close #3
    6986 
    6987 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    6988 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    6989 > review/Updated_Figures/07142025/EMDB_CJ/EMD_45507/Segmentations/Basal-
    6990 > Disk.mrc"
    6991 
    6992 Opened Basal-Disk.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level
    6993 0.137, step 1, values float32 
    6994 
    6995 > volume #3 level 0.1414
    6996 
    6997 > volume #3 level 0.1434
    6998 
    6999 > volume #3 level 0.1453
    7000 
    7001 > volume #3 level 0.1473
    7002 
    7003 > volume #3 level 0.1493
    7004 
    7005 > volume #3 level 0.1512
    7006 
    7007 > volume #3 level 0.1532
    7008 
    7009 > volume #3 level 0.1551
    7010 
    7011 > volume #3 level 0.161
    7012 
    7013 > volume #3 level 0.163
    7014 
    7015 > volume #3 level 0.1689
    7016 
    7017 > volume #3 level 0.1708
    7018 
    7019 > volume #3 level 0.1845
    7020 
    7021 > volume #3 level 0.1963
    7022 
    7023 > volume #3 level 0.2002
    7024 
    7025 > volume #3 level 0.2218
    7026 
    7027 > volume #3 level 0.2277
    7028 
    7029 > volume #3 level 0.2591
    7030 
    7031 > volume #3 level 0.2806
    7032 
    7033 > volume #3 level 0.2826
    7034 
    7035 > volume #3 level 0.2865
    7036 
    7037 > volume #3 level 0.2924
    7038 
    7039 > volume #3 level 0.2904
    7040 
    7041 > volume #3 level 0.2865
    7042 
    7043 > volume #3 level 0.2787
    7044 
    7045 > volume #3 level 0.2767
    7046 
    7047 > volume #3 level 0.2747
    7048 
    7049 > volume #3 level 0.2728
    7050 
    7051 > volume #3 level 0.2708
    7052 
    7053 > volume #3 level 0.2689
    7054 
    7055 > volume #3 level 0.2649
    7056 
    7057 > volume #3 level 0.263
    7058 
    7059 > volume #3 level 0.2571
    7060 
    7061 > volume #3 level 0.2512
    7062 
    7063 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project files/H.pylori/Top cage
    7064 > FlgP_related/Figures/From Others/June_2025/AlphaFold-
    7065 > predictions/fold_2025_06_11_14_41cj_flgp/fold_2025_06_11_14_41cj_flgp_model_0.cif"
    7066 
    7067 Chain information for fold_2025_06_11_14_41cj_flgp_model_0.cif #4 
    7068 --- 
    7069 Chain | Description 
    7070 A | . 
    7071  
    7072 
    7073 > select add #4
    7074 
    7075 252943 atoms, 256069 bonds, 32009 residues, 7 models selected 
    7076 
    7077 > select clear
    7078 
    7079 > select add #4
    7080 
    7081 1301 atoms, 1315 bonds, 171 residues, 1 model selected 
    7082 
    7083 > ui mousemode right "translate selected models"
    7084 
    7085 > view matrix models #4,1,0,0,775.66,0,1,0,601.66,0,0,1,556.38
    7086 
    7087 > ui mousemode right "rotate selected models"
    7088 
    7089 > view matrix models
    7090 > #4,-0.71681,-0.34261,0.60729,772.92,0.68328,-0.51877,0.51382,589.8,0.139,0.78326,0.60595,562.52
    7091 
    7092 > close #4
    7093 
    7094 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project files/H.pylori/Top cage
    7095 > FlgP_related/Figures/From Others/June_2025/AlphaFold-predictions/AF2/CJ-
    7096 > FlgP_AF2/test_3d00c_unrelaxed_rank_005_alphafold2_ptm_model_4_seed_000.pdb"
    7097 
    7098 Chain information for
    7099 test_3d00c_unrelaxed_rank_005_alphafold2_ptm_model_4_seed_000.pdb #4 
    7100 --- 
    7101 Chain | Description 
    7102 A | No description available 
    7103  
    7104 
    7105 > select add #4
    7106 
    7107 1300 atoms, 1314 bonds, 171 residues, 1 model selected 
    7108 
    7109 > view matrix models
    7110 > #4,-0.30525,0.67223,-0.67448,-0.040145,0.21908,-0.63971,-0.73673,-31.593,-0.92673,-0.37266,0.047995,-17.619
    7111 
    7112 > ui mousemode right "translate selected models"
    7113 
    7114 > view matrix models
    7115 > #4,-0.30525,0.67223,-0.67448,807.84,0.21908,-0.63971,-0.73673,339.89,-0.92673,-0.37266,0.047995,635.72
    7116 
    7117 > ui mousemode right "rotate selected models"
    7118 
    7119 > view matrix models
    7120 > #4,0.58024,-0.72035,-0.38002,790.06,-0.6013,-0.064197,-0.79644,344.26,0.54932,0.69063,-0.4704,663.35
    7121 
    7122 > view matrix models
    7123 > #4,0.46466,-0.48919,0.73809,798.4,0.15981,-0.77353,-0.61329,337.57,0.87095,0.40292,-0.28125,661.24
    7124 
    7125 > ui mousemode right "translate selected models"
    7126 
    7127 > view matrix models
    7128 > #4,0.46466,-0.48919,0.73809,692.29,0.15981,-0.77353,-0.61329,419.32,0.87095,0.40292,-0.28125,612.48
    7129 
    7130 > ui mousemode right "rotate selected models"
    7131 
    7132 > view matrix models
    7133 > #4,0.37169,-0.91836,-0.13584,679.94,-0.71051,-0.18722,-0.67833,423.51,0.59752,0.34864,-0.72209,607.59
    7134 
    7135 > view matrix models
    7136 > #4,0.54212,-0.80198,0.25085,684.99,-0.4198,-0.51709,-0.74591,419.27,0.72792,0.29907,-0.617,608.08
    7137 
    7138 > view matrix models
    7139 > #4,0.22657,-0.79827,0.55806,684.16,-0.747,-0.51009,-0.42637,418.48,0.62502,-0.32027,-0.71188,595.63
    7140 
    7141 > ui mousemode right "translate selected models"
    7142 
    7143 > view matrix models
    7144 > #4,0.22657,-0.79827,0.55806,682.39,-0.747,-0.51009,-0.42637,416.57,0.62502,-0.32027,-0.71188,609.46
    7145 
    7146 > volume #3 level 0.1845
    7147 
    7148 > view matrix models
    7149 > #4,0.22657,-0.79827,0.55806,671.41,-0.747,-0.51009,-0.42637,421.98,0.62502,-0.32027,-0.71188,615.66
    7150 
    7151 > ui mousemode right "rotate selected models"
    7152 
    7153 > view matrix models
    7154 > #4,-0.016698,-0.80101,0.59842,669.8,-0.59264,-0.47411,-0.65115,422.75,0.80529,-0.36552,-0.4668,617.21
    7155 
    7156 > close session
    7157 
    7158 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Lab Slides/Lab
    7159 > Meeting/2025/Sep_2025/CJ_Whole_models.cxs" format session
    7160 
    7161 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    7162 level 0.0137, step 1, values float32 
    7163 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    7164 step 1, values float32 
    7165 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    7166 level 0.0137, step 1, values float32 
    7167 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    7168 level 0.0137, step 1, values float32 
    7169 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    7170 level 0.027, step 1, values float32 
    7171 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    7172 step 1, values float32 
    7173 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    7174 level 0.0166, step 1, values float32 
    7175 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    7176 pixel 2.14, shown at level 0.000576, step 1, values float32 
    7177 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    7178 pixel 2.14, shown at level 0.000576, step 1, values float32 
    7179 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    7180 pixel 2.14, shown at level 0.000576, step 1, values float32 
    7181 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    7182 pixel 2.14, shown at level 0.000576, step 1, values float32 
    7183 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    7184 pixel 2.14, shown at level 0.000576, step 1, values float32 
    7185 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    7186 pixel 2.14, shown at level 0.000576, step 1, values float32 
    7187 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    7188 pixel 2.14, shown at level 0.000576, step 1, values float32 
    7189 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    7190 pixel 2.14, shown at level 0.000576, step 1, values float32 
    7191 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    7192 pixel 2.14, shown at level 0.000576, step 1, values float32 
    7193 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    7194 pixel 2.14, shown at level 0.000576, step 1, values float32 
    7195 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    7196 pixel 2.14, shown at level 0.000576, step 1, values float32 
    7197 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    7198 pixel 2.14, shown at level 0.000576, step 1, values float32 
    7199 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    7200 pixel 2.14, shown at level 0.000576, step 1, values float32 
    7201 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    7202 pixel 2.14, shown at level 0.000576, step 1, values float32 
    7203 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    7204 pixel 2.14, shown at level 0.000576, step 1, values float32 
    7205 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    7206 pixel 2.14, shown at level 0.000576, step 1, values float32 
    7207 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    7208 pixel 2.14, shown at level 0.000576, step 1, values float32 
    7209 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    7210 pixel 2.14, shown at level 0.000793, step 1, values float32 
    7211 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    7212 pixel 2.14, shown at level 0.000793, step 1, values float32 
    7213 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    7214 pixel 2.14, shown at level 0.000793, step 1, values float32 
    7215 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    7216 pixel 2.14, shown at level 0.000793, step 1, values float32 
    7217 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    7218 pixel 2.14, shown at level 0.000793, step 1, values float32 
    7219 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    7220 pixel 2.14, shown at level 0.000793, step 1, values float32 
    7221 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    7222 pixel 2.14, shown at level 0.000793, step 1, values float32 
    7223 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    7224 pixel 2.14, shown at level 0.000793, step 1, values float32 
    7225 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    7226 pixel 2.14, shown at level 0.000793, step 1, values float32 
    7227 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    7228 pixel 2.14, shown at level 0.000793, step 1, values float32 
    7229 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    7230 pixel 2.14, shown at level 0.000793, step 1, values float32 
    7231 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    7232 pixel 2.14, shown at level 0.000793, step 1, values float32 
    7233 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    7234 pixel 2.14, shown at level 0.000793, step 1, values float32 
    7235 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    7236 pixel 2.14, shown at level 0.000793, step 1, values float32 
    7237 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    7238 pixel 2.14, shown at level 0.000793, step 1, values float32 
    7239 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    7240 pixel 2.14, shown at level 0.000793, step 1, values float32 
    7241 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    7242 pixel 2.14, shown at level 0.000793, step 1, values float32 
    7243 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    7244 shown at level 0.000785, step 1, values float32 
    7245 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    7246 shown at level 0.000785, step 1, values float32 
    7247 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    7248 shown at level 0.000785, step 1, values float32 
    7249 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    7250 shown at level 0.000785, step 1, values float32 
    7251 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    7252 shown at level 0.000785, step 1, values float32 
    7253 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    7254 shown at level 0.000785, step 1, values float32 
    7255 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    7256 shown at level 0.000785, step 1, values float32 
    7257 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    7258 shown at level 0.000785, step 1, values float32 
    7259 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    7260 shown at level 0.000785, step 1, values float32 
    7261 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    7262 shown at level 0.000785, step 1, values float32 
    7263 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    7264 shown at level 0.000785, step 1, values float32 
    7265 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    7266 shown at level 0.000785, step 1, values float32 
    7267 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    7268 shown at level 0.000785, step 1, values float32 
    7269 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    7270 shown at level 0.000785, step 1, values float32 
    7271 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    7272 shown at level 0.000785, step 1, values float32 
    7273 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    7274 shown at level 0.000785, step 1, values float32 
    7275 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    7276 shown at level 0.000785, step 1, values float32 
    7277 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    7278 shown at level 0.00107, step 1, values float32 
    7279 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    7280 shown at level 0.00107, step 1, values float32 
    7281 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    7282 shown at level 0.00107, step 1, values float32 
    7283 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    7284 shown at level 0.00107, step 1, values float32 
    7285 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    7286 shown at level 0.00107, step 1, values float32 
    7287 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    7288 shown at level 0.00107, step 1, values float32 
    7289 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    7290 shown at level 0.00107, step 1, values float32 
    7291 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    7292 shown at level 0.00107, step 1, values float32 
    7293 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    7294 shown at level 0.00107, step 1, values float32 
    7295 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    7296 shown at level 0.00107, step 1, values float32 
    7297 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    7298 shown at level 0.00107, step 1, values float32 
    7299 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    7300 shown at level 0.00107, step 1, values float32 
    7301 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    7302 shown at level 0.00107, step 1, values float32 
    7303 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    7304 shown at level 0.00107, step 1, values float32 
    7305 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    7306 shown at level 0.00107, step 1, values float32 
    7307 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    7308 shown at level 0.00107, step 1, values float32 
    7309 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    7310 shown at level 0.00107, step 1, values float32 
    7311 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    7312 shown at level 0.000848, step 1, values float32 
    7313 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    7314 shown at level 0.000848, step 1, values float32 
    7315 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    7316 shown at level 0.000848, step 1, values float32 
    7317 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    7318 shown at level 0.000848, step 1, values float32 
    7319 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    7320 shown at level 0.000848, step 1, values float32 
    7321 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    7322 shown at level 0.000848, step 1, values float32 
    7323 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    7324 shown at level 0.000848, step 1, values float32 
    7325 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    7326 shown at level 0.000848, step 1, values float32 
    7327 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    7328 shown at level 0.000848, step 1, values float32 
    7329 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    7330 shown at level 0.000848, step 1, values float32 
    7331 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    7332 shown at level 0.000848, step 1, values float32 
    7333 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    7334 shown at level 0.000848, step 1, values float32 
    7335 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    7336 shown at level 0.000848, step 1, values float32 
    7337 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    7338 shown at level 0.000848, step 1, values float32 
    7339 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    7340 shown at level 0.000848, step 1, values float32 
    7341 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    7342 shown at level 0.000848, step 1, values float32 
    7343 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    7344 shown at level 0.000848, step 1, values float32 
    7345 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    7346 2.14, shown at level 0.000997, step 1, values float32 
    7347 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    7348 pixel 2.14, shown at level 0.000997, step 1, values float32 
    7349 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    7350 pixel 2.14, shown at level 0.000997, step 1, values float32 
    7351 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    7352 pixel 2.14, shown at level 0.000997, step 1, values float32 
    7353 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    7354 pixel 2.14, shown at level 0.000997, step 1, values float32 
    7355 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    7356 pixel 2.14, shown at level 0.000997, step 1, values float32 
    7357 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    7358 pixel 2.14, shown at level 0.000997, step 1, values float32 
    7359 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    7360 pixel 2.14, shown at level 0.000997, step 1, values float32 
    7361 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    7362 pixel 2.14, shown at level 0.000997, step 1, values float32 
    7363 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    7364 pixel 2.14, shown at level 0.000997, step 1, values float32 
    7365 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    7366 pixel 2.14, shown at level 0.000997, step 1, values float32 
    7367 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    7368 pixel 2.14, shown at level 0.000997, step 1, values float32 
    7369 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    7370 pixel 2.14, shown at level 0.000997, step 1, values float32 
    7371 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    7372 pixel 2.14, shown at level 0.000997, step 1, values float32 
    7373 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    7374 pixel 2.14, shown at level 0.000997, step 1, values float32 
    7375 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    7376 pixel 2.14, shown at level 0.000997, step 1, values float32 
    7377 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    7378 pixel 2.14, shown at level 0.000997, step 1, values float32 
    7379 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    7380 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    7381 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    7382 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    7383 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    7384 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    7385 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    7386 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    7387 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    7388 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    7389 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    7390 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    7391 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    7392 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    7393 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    7394 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    7395 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    7396 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    7397 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    7398 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    7399 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    7400 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    7401 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    7402 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    7403 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    7404 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    7405 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    7406 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    7407 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    7408 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    7409 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    7410 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    7411 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    7412 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    7413 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    7414 shown at level 0.0112, step 1, values float32 
    7415 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    7416 2.14, shown at level 0.00974, step 1, values float32 
    7417 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    7418 level 0.157, step 1, values float32 
    7419 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    7420 0.0283, step 1, values float32 
    7421 Opened 1unit_PflABCD.mrc as #5, grid size 200,200,200, pixel 2.14, shown at
    7422 level 0.00404, step 1, values float32 
    7423 Opened PflAB_wout_FlgYoverlap_imasked as #18, grid size 200,200,200, pixel
    7424 2.14, shown at level 0.00045, step 1, values float32 
    7425 Opened PflC-only-Model-area.mrc as #19, grid size 200,200,200, pixel 2.14,
    7426 shown at level 0.00107, step 1, values float32 
    7427 Opened PflC-only-Model-area.mrc copy as #20, grid size 200,200,200, pixel
    7428 2.14, shown at level 0.00107, step 1, values float32 
    7429 Opened PflC-only-Model-area.mrc copy as #21, grid size 200,200,200, pixel
    7430 2.14, shown at level 0.00107, step 1, values float32 
    7431 Opened PflC-only-Model-area.mrc copy as #22, grid size 200,200,200, pixel
    7432 2.14, shown at level 0.00107, step 1, values float32 
    7433 Opened PflC-only-Model-area.mrc copy as #23, grid size 200,200,200, pixel
    7434 2.14, shown at level 0.00107, step 1, values float32 
    7435 Opened PflC-only-Model-area.mrc copy as #24, grid size 200,200,200, pixel
    7436 2.14, shown at level 0.00107, step 1, values float32 
    7437 Opened PflC-only-Model-area.mrc copy as #25, grid size 200,200,200, pixel
    7438 2.14, shown at level 0.00107, step 1, values float32 
    7439 Opened PflC-only-Model-area.mrc copy as #26, grid size 200,200,200, pixel
    7440 2.14, shown at level 0.00107, step 1, values float32 
    7441 Opened PflC-only-Model-area.mrc copy as #27, grid size 200,200,200, pixel
    7442 2.14, shown at level 0.00107, step 1, values float32 
    7443 Opened PflC-only-Model-area.mrc copy as #28, grid size 200,200,200, pixel
    7444 2.14, shown at level 0.00107, step 1, values float32 
    7445 Opened PflC-only-Model-area.mrc copy as #29, grid size 200,200,200, pixel
    7446 2.14, shown at level 0.00107, step 1, values float32 
    7447 Opened PflC-only-Model-area.mrc copy as #30, grid size 200,200,200, pixel
    7448 2.14, shown at level 0.00107, step 1, values float32 
    7449 Opened PflC-only-Model-area.mrc copy as #31, grid size 200,200,200, pixel
    7450 2.14, shown at level 0.00107, step 1, values float32 
    7451 Opened PflC-only-Model-area.mrc copy as #32, grid size 200,200,200, pixel
    7452 2.14, shown at level 0.00107, step 1, values float32 
    7453 Opened PflC-only-Model-area.mrc copy as #33, grid size 200,200,200, pixel
    7454 2.14, shown at level 0.00107, step 1, values float32 
    7455 Opened PflC-only-Model-area.mrc copy as #34, grid size 200,200,200, pixel
    7456 2.14, shown at level 0.00107, step 1, values float32 
    7457 Opened PflC-only-Model-area.mrc copy as #35, grid size 200,200,200, pixel
    7458 2.14, shown at level 0.00107, step 1, values float32 
    7459 Opened PflC-only-Model-area.mrc copy as #36, grid size 200,200,200, pixel
    7460 2.14, shown at level 0.00107, step 1, values float32 
    7461 Opened FlgV-ring.mrc as #37, grid size 200,200,120, pixel 4.3,4.3,4.3, shown
    7462 at level 0.0486, step 1, values float32 
    7463 Opened C-ring.mrc as #38, grid size 250,250,250, pixel 4.3, shown at level
    7464 0.0283, step 1, values float32 
    7465 opened ChimeraX session 
    7466 Showing C-Vrings.seg - 65 regions, 65 surfaces 
    7467 
    7468 > hide #!17 models
    7469 
    7470 > show #!38 models
    7471 
    7472 > hide #!37 models
    7473 
    7474 > hide #!89 models
    7475 
    7476 > hide #40 models
    7477 
    7478 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Lab Slides/Lab
    7479 > Meeting/2025/Sep_2025/Additional-images/8uox-mono.pdb"
    7480 
    7481 Summary of feedback from opening /Volumes/Lab Backup/Jun Liu Lab 2025/Lab
    7482 Slides/Lab Meeting/2025/Sep_2025/Additional-images/8uox-mono.pdb 
    7483 --- 
    7484 warnings | Start residue of secondary structure not found: HELIX 1 1 SERB1 5 HISB1 28 1 24 
    7485 Start residue of secondary structure not found: HELIX 2 2 SERB1 30 ASNB1 43 1
    7486 14 
    7487 Start residue of secondary structure not found: HELIX 3 3 SERB1 48 ALAB1 67 1
    7488 20 
    7489 Start residue of secondary structure not found: HELIX 4 4 ASNB1 74 ARGB1 101 1
    7490 28 
    7491 Start residue of secondary structure not found: HELIX 5 5 SERB1 105 ARGB1 123
    7492 1 19 
    7493 70 messages similar to the above omitted 
    7494  
    7495 Chain information for 8uox-mono.pdb 
    7496 --- 
    7497 Chain | Description 
    7498 41.1/B1 | No description available 
    7499 41.2/C1 | No description available 
    7500 41.3/D1 41.4/E1 | No description available 
    7501 41.5/F1 | No description available 
    7502  
    7503 
    7504 > select add #41
    7505 
    7506 6808 atoms, 6894 bonds, 864 residues, 6 models selected 
    7507 
    7508 > view matrix models
    7509 > #41,0.90915,0.39332,0.13689,-152.77,0.41204,-0.80174,-0.43294,631.02,-0.060534,0.45001,-0.89097,671.68
    7510 
    7511 > view matrix models
    7512 > #41,-0.70283,0.66498,0.25267,668.87,0.70477,0.69916,0.12032,-378.66,-0.096644,0.26264,-0.96004,795.32
    7513 
    7514 > view matrix models
    7515 > #41,-0.70244,0.69708,0.14371,703.36,0.71164,0.69134,0.125,-381.87,-0.012216,0.19007,-0.98169,781
    7516 
    7517 > ui mousemode right "translate selected models"
    7518 
    7519 > view matrix models
    7520 > #41,-0.70244,0.69708,0.14371,809.42,0.71164,0.69134,0.125,-400.72,-0.012216,0.19007,-0.98169,626.95
    7521 
    7522 > ui tool show "Side View"
    7523 
    7524 > view matrix models
    7525 > #41,-0.70244,0.69708,0.14371,808.21,0.71164,0.69134,0.125,-399.55,-0.012216,0.19007,-0.98169,618.7
    7526 
    7527 > ui mousemode right "rotate selected models"
    7528 
    7529 > view matrix models
    7530 > #41,-0.69466,0.67775,0.24104,768.74,0.70261,0.71113,0.025317,-358.46,-0.15425,0.18694,-0.97018,702.75
    7531 
    7532 > ui mousemode right "translate selected models"
    7533 
    7534 The cached device pixel ratio value was stale on window expose. Please file a
    7535 QTBUG which explains how to reproduce. 
    7536 
    7537 > view matrix models
    7538 > #41,-0.69466,0.67775,0.24104,765.74,0.70261,0.71113,0.025317,-355.39,-0.15425,0.18694,-0.97018,701.55
    7539 
    7540 > view matrix models
    7541 > #41,-0.69466,0.67775,0.24104,765.23,0.70261,0.71113,0.025317,-353.6,-0.15425,0.18694,-0.97018,701.72
    7542 
    7543 > show #!3 models
    7544 
    7545 > combine #41
    7546 
    7547 > view orient
    7548 
    7549 > sym #41 C40 copies true center #3
    7550 
    7551 Made 40 copies for 8uox-mono.pdb, 8uox-mono.pdb, 8uox-mono.pdb, 8uox-mono.pdb,
    7552 8uox-mono.pdb symmetry C40 
    7553 
    7554 > hide #!43 models
    7555 
    7556 > show #!43 models
    7557 
    7558 > hide #42 models
    7559 
    7560 > hide #!41 models
    7561 
    7562 > color #43 #a9a9a973 models
    7563 
    7564 > color #43 darkgrey models
    7565 
    7566 > color #43 #5e5e5eff models
    7567 
    7568 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Lab Slides/Lab
    7569 > Meeting/2025/Sep_2025/Additional-images/8WLP.cif"
    7570 
    7571 8WLP.cif title: 
    7572 Cryo-EM structure of the distal rod-hook within the flagellar motor-hook
    7573 complex in the CCW state. [more info...] 
    7574  
    7575 Chain information for 8WLP.cif #44 
    7576 --- 
    7577 Chain | Description | UniProt 
    7578 0 1 2 3 4 5 6 7 8 9 ZA ZB ZC ZD ZE r s t u v w x y z | Flagellar basal-body rod protein FlgG | FLGG_SALTY 1-260 
    7579 ZF ZG ZH ZI ZJ ZK ZL ZM ZN ZO ZP ZQ ZR ZS ZT ZU ZV ZW ZX ZY ZZ Za Zb Zc Zd Ze Zf Zg Zh | Flagellar hook protein FlgE | FLGE_SALTY 1-403 
    7580  
    7581 
    7582 > select add #44
    7583 
    7584 138336 atoms, 140257 bonds, 11 pseudobonds, 18634 residues, 8 models selected 
    7585 
    7586 > hide #!43 models
    7587 
    7588 > hide #!38 models
    7589 
    7590 > ui mousemode right "rotate selected models"
    7591 
    7592 > view matrix models
    7593 > #41,0.94875,-0.30143,0.094909,-480.56,0.28779,0.94819,0.13455,-66.063,-0.13055,-0.10034,0.98635,-44.886,#44,-0.84048,0.45465,-0.29478,530.21,0.47516,0.8799,0.0023232,-120.17,0.26043,-0.13811,-0.95556,377.52
    7594 
    7595 > hide sel & #!44 atoms
    7596 
    7597 > show sel & #!44 cartoons
    7598 
    7599 > ui mousemode right "translate selected models"
    7600 
    7601 > view matrix models
    7602 > #41,0.94875,-0.30143,0.094909,-347.73,0.28779,0.94819,0.13455,144.41,-0.13055,-0.10034,0.98635,228.13,#44,-0.84048,0.45465,-0.29478,663.04,0.47516,0.8799,0.0023232,90.31,0.26043,-0.13811,-0.95556,650.54
    7603 
    7604 > view matrix models
    7605 > #41,0.94875,-0.30143,0.094909,-289.86,0.28779,0.94819,0.13455,103.37,-0.13055,-0.10034,0.98635,445.48,#44,-0.84048,0.45465,-0.29478,720.91,0.47516,0.8799,0.0023232,49.265,0.26043,-0.13811,-0.95556,867.89
    7606 
    7607 > color #3 #797979ef models
    7608 
    7609 > color #3 #797979ae models
    7610 
    7611 > ui mousemode right "rotate selected models"
    7612 
    7613 > view matrix models
    7614 > #41,0.93758,-0.26688,-0.22297,-161.09,0.29294,0.95162,0.092787,114.72,0.18742,-0.15231,0.9704,184.01,#44,-0.88592,0.46332,0.021806,665.37,0.46383,0.8849,0.04269,42.724,0.00048317,0.047934,-0.99885,901.5
    7615 
    7616 > ui mousemode right "translate selected models"
    7617 
    7618 > view matrix models
    7619 > #41,0.93758,-0.26688,-0.22297,-147.73,0.29294,0.95162,0.092787,117.64,0.18742,-0.15231,0.9704,240.55,#44,-0.88592,0.46332,0.021806,678.73,0.46383,0.8849,0.04269,45.641,0.00048317,0.047934,-0.99885,958.04
    7620 
    7621 > view matrix models
    7622 > #41,0.93758,-0.26688,-0.22297,-146.38,0.29294,0.95162,0.092787,129.42,0.18742,-0.15231,0.9704,239.88,#44,-0.88592,0.46332,0.021806,680.08,0.46383,0.8849,0.04269,57.428,0.00048317,0.047934,-0.99885,957.37
    7623 
    7624 > ui tool show "Fit in Map"
    7625 
    7626 The cached device pixel ratio value was stale on window expose. Please file a
    7627 QTBUG which explains how to reproduce. 
    7628 
    7629 > fitmap #44 inMap #3
    7630 
    7631 Fit molecule 8WLP.cif (#44) to map Rod.mrc (#3) using 131528 atoms 
    7632 average map value = 0.07231, steps = 268 
    7633 shifted from previous position = 19.4 
    7634 rotated from previous position = 8.37 degrees 
    7635 atoms outside contour = 8332, contour level = 0.01374 
    7636  
    7637 Position of 8WLP.cif (#44) relative to Rod.mrc (#3) coordinates: 
    7638 Matrix rotation and translation 
    7639 -0.85319927 0.52153127 0.00749920 647.57464970 
    7640 0.51899098 0.85030022 -0.08739592 92.67412166 
    7641 -0.05195627 -0.07067409 -0.99614548 1025.24353646 
    7642 Axis 0.27051655 0.96183781 -0.04109543 
    7643 Axis point 319.06654577 0.00000000 509.88106684 
    7644 Rotation angle (degrees) 178.22886473 
    7645 Shift along axis 222.18431135 
    7646  
    7647 
    7648 > fitmap #44 inMap #3
    7649 
    7650 Fit molecule 8WLP.cif (#44) to map Rod.mrc (#3) using 131528 atoms 
    7651 average map value = 0.07231, steps = 28 
    7652 shifted from previous position = 0.0622 
    7653 rotated from previous position = 0.185 degrees 
    7654 atoms outside contour = 8320, contour level = 0.01374 
    7655  
    7656 Position of 8WLP.cif (#44) relative to Rod.mrc (#3) coordinates: 
    7657 Matrix rotation and translation 
    7658 -0.85151976 0.52426821 0.00755287 645.99995837 
    7659 0.52169474 0.84860455 -0.08777851 92.39380904 
    7660 -0.05242887 -0.07080481 -0.99611143 1025.43527036 
    7661 Axis 0.27205701 0.96139669 -0.04124798 
    7662 Axis point 318.32180280 -0.00000000 509.94876718 
    7663 Rotation angle (degrees) 178.21236198 
    7664 Shift along axis 222.27878438 
    7665  
    7666 
    7667 > fitmap #44 inMap #3
    7668 
    7669 Fit molecule 8WLP.cif (#44) to map Rod.mrc (#3) using 131528 atoms 
    7670 average map value = 0.07232, steps = 48 
    7671 shifted from previous position = 0.121 
    7672 rotated from previous position = 0.517 degrees 
    7673 atoms outside contour = 8312, contour level = 0.01374 
    7674  
    7675 Position of 8WLP.cif (#44) relative to Rod.mrc (#3) coordinates: 
    7676 Matrix rotation and translation 
    7677 -0.84678770 0.53188082 0.00731350 641.89552424 
    7678 0.52924090 0.84380658 -0.08885206 91.77915417 
    7679 -0.05342988 -0.07136820 -0.99601803 1025.92420935 
    7680 Axis 0.27636077 0.96014763 -0.04172825 
    7681 Axis point 316.26780380 0.00000000 510.17535022 
    7682 Rotation angle (degrees) 178.18729979 
    7683 Shift along axis 222.70625387 
    7684  
    7685 
    7686 > view orient
    7687 
    7688 > turn x 90
    7689 
    7690 > turn y 10
    7691 
    7692 > ui mousemode right "rotate selected models"
    7693 
    7694 > view matrix models
    7695 > #41,0.94164,-0.26952,-0.2017,-158.04,0.2818,0.95886,0.034338,161.47,0.18414,-0.089173,0.97885,231.39,#44,-0.84741,0.53075,-0.014465,647.16,0.53094,0.84691,-0.029016,77.312,-0.0031494,-0.032268,-0.99947,996.39
    7696 
    7697 > ui mousemode right "translate selected models"
    7698 
    7699 > view matrix models
    7700 > #41,0.94164,-0.26952,-0.2017,-156.75,0.2818,0.95886,0.034338,157.93,0.18414,-0.089173,0.97885,231.74,#44,-0.84741,0.53075,-0.014465,648.45,0.53094,0.84691,-0.029016,73.772,-0.0031494,-0.032268,-0.99947,996.74
    7701 
    7702 > turn y 10
    7703 
    7704 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Lab Slides/Lab
    7705 > Meeting/2025/Sep_2025/Additional-images/8WLQ.cif"
    7706 
    7707 8WLQ.cif title: 
    7708 Cryo-EM structure of the whole rod-export apparatus with hook within the
    7709 flagellar motor-hook complex in the CCW state. [more info...] 
    7710  
    7711 Chain information for 8WLQ.cif #45 
    7712 --- 
    7713 Chain | Description | UniProt 
    7714 0 1 2 3 4 5 6 7 8 9 ZA ZB ZC ZD ZE r s t u v w x y z | Flagellar basal-body rod protein FlgG | FLGG_SALTY 1-260 
    7715 A B C D | Flagellar biosynthetic protein FliQ | FLIQ_SALTY 1-89 
    7716 E | Flagellar biosynthetic protein FliR | FLIR_SALTY 1-264 
    7717 F G H I J | Flagellar biosynthetic protein FliP | FLIP_SALTY 1-245 
    7718 K L M N O P | Flagellar hook-basal body complex protein FliE | FLIE_SALTY 1-104 
    7719 Q R S T U | Flagellar basal body rod protein FlgB | FLGB_SALTY 1-138 
    7720 V W X Y Z a | Flagellar basal-body rod protein FlgC | FLGC_SALTY 1-134 
    7721 ZF ZG ZH ZI ZJ ZK ZL ZM ZN ZO ZP ZQ ZR ZS ZT ZU ZV ZW ZX ZY ZZ Za Zb Zc Zd Ze Zf Zg Zh | Flagellar hook protein FlgE | FLGE_SALTY 1-403 
    7722 b c d e f g h i j k l | Flagellar M-ring protein | FLIF_SALTY 1-560 
    7723 m n o p q | Flagellar basal-body rod protein FlgF | FLGF_SALTY 1-251 
    7724  
    7725 
    7726 > select subtract #44
    7727 
    7728 6808 atoms, 6894 bonds, 864 residues, 6 models selected 
    7729 
    7730 > select subtract #41
    7731 
    7732 Nothing selected 
    7733 
    7734 > select add #45
    7735 
    7736 167758 atoms, 170171 bonds, 16 pseudobonds, 22615 residues, 2 models selected 
    7737 
    7738 > hide sel atoms
    7739 
    7740 > show sel cartoons
    7741 
    7742 > matchmaker #45 to #44
    7743 
    7744 Parameters 
    7745 --- 
    7746 Chain pairing | bb 
    7747 Alignment algorithm | Needleman-Wunsch 
    7748 Similarity matrix | BLOSUM-62 
    7749 SS fraction | 0.3 
    7750 Gap open (HH/SS/other) | 18/18/6 
    7751 Gap extend | 1 
    7752 SS matrix |  |  | H | S | O 
    7753 ---|---|---|--- 
    7754 H | 6 | -9 | -6 
    7755 S |  | 6 | -6 
    7756 O |  |  | 4 
    7757 Iteration cutoff | 2 
    7758  
    7759 Matchmaker 8WLP.cif, chain ZU (#44) with 8WLQ.cif, chain ZU (#45), sequence
    7760 alignment score = 2035.2 
    7761 RMSD between 401 pruned atom pairs is 0.001 angstroms; (across all 401 pairs:
    7762 0.001) 
    7763  
    7764 
    7765 > hide #!44 models
    7766 
    7767 > select subtract #45
    7768 
    7769 Nothing selected 
    7770 
    7771 > show #16 models
    7772 
    7773 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Lab Slides/Lab
    7774 > Meeting/2025/Sep_2025/Additional-images/6K3I.cif"
    7775 
    7776 6K3I.cif title: 
    7777 Salmonella hook in curved state - 66 subunit models [more info...] 
    7778  
    7779 Chain information for 6K3I.cif #46 
    7780 --- 
    7781 Chain | Description | UniProt 
    7782 AA AB AC AD AE AF AG AH AI AJ AK BA BB BC BD BE BF BG BH BI BJ BK CA CB CC CD CE CF CG CH CI CJ CK DA DB DC DD DE DF DG DH DI DJ DK EA EB EC ED EE EF EG EH EI EJ EK FA FB FC FD FE FF FG FH FI FJ FK | Flagellar hook protein FlgE | FLGE_SALTY 1-402 
    7783  
    7784 
    7785 > select add #46
    7786 
    7787 195294 atoms, 198198 bonds, 26532 residues, 1 model selected 
    7788 
    7789 > hide sel atoms
    7790 
    7791 > show sel cartoons
    7792 
    7793 > view matrix models #46,1,0,0,-9.0486,0,1,0,210.13,0,0,1,732.25
    7794 
    7795 > view matrix models #46,1,0,0,318.34,0,1,0,302.85,0,0,1,671.14
    7796 
    7797 > ui mousemode right "rotate selected models"
    7798 
    7799 > view matrix models
    7800 > #46,0.97149,-0.092403,-0.21832,415.35,0.032975,0.96463,-0.26154,380.73,0.23476,0.24689,0.94018,559.21
    7801 
    7802 > view matrix models
    7803 > #46,0.99861,-0.011435,-0.051371,336.86,-0.010293,0.91482,-0.40373,446.82,0.051612,0.4037,0.91343,565.07
    7804 
    7805 > ui mousemode right "translate selected models"
    7806 
    7807 > view matrix models
    7808 > #46,0.99861,-0.011435,-0.051371,321.56,-0.010293,0.91482,-0.40373,405.71,0.051612,0.4037,0.91343,628.59
    7809 
    7810 > hide #!3 models
    7811 
    7812 > view matrix models
    7813 > #46,0.99861,-0.011435,-0.051371,330.26,-0.010293,0.91482,-0.40373,397.99,0.051612,0.4037,0.91343,629.73
    7814 
    7815 > view matrix models
    7816 > #46,0.99861,-0.011435,-0.051371,323.54,-0.010293,0.91482,-0.40373,405.58,0.051612,0.4037,0.91343,629.88
    7817 
    7818 > ui mousemode right "rotate selected models"
    7819 
    7820 > view matrix models
    7821 > #46,0.99983,0.018206,-0.0017472,300.22,-0.016953,0.88669,-0.46206,432.28,-0.0068631,0.46201,0.88685,634.54
    7822 
    7823 > ui mousemode right "translate selected models"
    7824 
    7825 > view matrix models
    7826 > #46,0.99983,0.018206,-0.0017472,310.02,-0.016953,0.88669,-0.46206,421.45,-0.0068631,0.46201,0.88685,636.9
    7827 
    7828 > ui mousemode right "rotate selected models"
    7829 
    7830 > view matrix models
    7831 > #46,0.99809,0.046882,0.040294,289.89,-0.019665,0.85874,-0.51204,444.74,-0.058607,0.51027,0.85802,643.53
    7832 
    7833 > ui mousemode right "translate selected models"
    7834 
    7835 > view matrix models
    7836 > #46,0.99809,0.046882,0.040294,298.61,-0.019665,0.85874,-0.51204,434.91,-0.058607,0.51027,0.85802,643.56
    7837 
    7838 > view matrix models
    7839 > #46,0.99809,0.046882,0.040294,303.69,-0.019665,0.85874,-0.51204,441.46,-0.058607,0.51027,0.85802,644.59
    7840 
    7841 > select clear
    7842 
    7843 > hide #16 models
    7844 
    7845 > color #209 #797979eb models
    7846 
    7847 > color #209 #797979ff models
    7848 
    7849 > show #!209 models
    7850 
    7851 > set bgColor white
    7852 
    7853 > set bgColor #ffffff00
    7854 
    7855 > lighting simple
    7856 
    7857 > show #!44 models
    7858 
    7859 > hide #!44 models
    7860 
    7861 > close #44
    7862 
    7863 > color #45 #797979ff models
    7864 
    7865 > color #46 #797979ff models
    7866 
    7867 > show #!13 models
    7868 
    7869 > show #!14 models
    7870 
    7871 > show #!15 models
    7872 
    7873 > show #16 models
    7874 
    7875 > show #40 models
    7876 
    7877 > select add #40
    7878 
    7879 116020 atoms, 117640 bonds, 14440 residues, 1 model selected 
    7880 
    7881 > lighting soft
    7882 
    7883 Alignment identifier is 1 
    7884 Alignment identifier is 2 
    7885 Alignment identifier is 3 
    7886 
    7887 > select clear
    7888 
    7889 > select #40/A,F,K,P,U,Z,e,j,o,t,y,4,9,AD,AI,AN,AS,AX,Ac,Ah:118
    7890 
    7891 120 atoms, 100 bonds, 20 residues, 1 model selected 
    7892 
    7893 > select #40/A,F,K,P,U,Z,e,j,o,t,y,4,9,AD,AI,AN,AS,AX,Ac,Ah
    7894 
    7895 19860 atoms, 20240 bonds, 2360 residues, 1 model selected 
    7896 
    7897 > color sel yellow
    7898 
    7899 > select clear
    7900 
    7901 > select #40/B-C,G-H,L-M,Q-R,V-W,a-b,f-g,k-l,p-q,u-v,z,1,5-6,0,AA,AE-AF,AJ-
    7902 > AK,AO-AP,AT-AU,AY-AZ,Ad-Ae,Ai-Aj:192
    7903 
    7904 400 atoms, 360 bonds, 40 residues, 1 model selected 
    7905 
    7906 > select #40/B-C,G-H,L-M,Q-R,V-W,a-b,f-g,k-l,p-q,u-v,z,1,5-6,0,AA,AE-AF,AJ-
    7907 > AK,AO-AP,AT-AU,AY-AZ,Ad-Ae,Ai-Aj
    7908 
    7909 59400 atoms, 60320 bonds, 7680 residues, 1 model selected 
    7910 
    7911 > color sel #009193ff
    7912 
    7913 > color sel #3d5393ff
    7914 
    7915 > color sel #385e93ff
    7916 
    7917 > color sel #366393ff
    7918 
    7919 > color sel #2d6593ff
    7920 
    7921 > color sel #276393ff
    7922 
    7923 > color sel #256393ff
    7924 
    7925 > color sel #1d5e93ff
    7926 
    7927 > color sel #005493ff
    7928 
    7929 > color sel #005593ff
    7930 
    7931 > color sel #015a93ff
    7932 
    7933 > color sel #086693ff
    7934 
    7935 > color sel #0b6e93ff
    7936 
    7937 > color sel #0b7093ff
    7938 
    7939 > color sel #0c7093ff
    7940 
    7941 > color sel #0e7493ff
    7942 
    7943 > color sel #107d93ff
    7944 
    7945 > color sel #0f9392ff
    7946 
    7947 > color sel #109390ff
    7948 
    7949 > color sel #0a9392ff
    7950 
    7951 > color sel #029093ff
    7952 
    7953 > color sel #029fa2ff
    7954 
    7955 > color sel #02acafff
    7956 
    7957 > color sel #03afb2ff
    7958 
    7959 > select clear
    7960 
    7961 > select #40/D-E,I-J,N-O,S-T,X-Y,c-d,h-i,m-n,r-s,w-x,2-3,7-8,AB-AC,AG-AH,AL-
    7962 > AM,AQ-AR,AV-AW,Aa-Ab,Af-Ag,Ak-Al:110
    7963 
    7964 360 atoms, 320 bonds, 40 residues, 1 model selected 
    7965 
    7966 > select #40/D-E,I-J,N-O,S-T,X-Y,c-d,h-i,m-n,r-s,w-x,2-3,7-8,AB-AC,AG-AH,AL-
    7967 > AM,AQ-AR,AV-AW,Aa-Ab,Af-Ag,Ak-Al
    7968 
    7969 36760 atoms, 37080 bonds, 4400 residues, 1 model selected 
    7970 
    7971 > color sel #0096ffff
    7972 
    7973 > color sel #eba6ffff
    7974 
    7975 > color sel #e9a7ffff
    7976 
    7977 > color sel #e7a7ffff
    7978 
    7979 > color sel #e5a8ffff
    7980 
    7981 > color sel #eac9ffff
    7982 
    7983 > color sel #ecd2ffff
    7984 
    7985 > color sel #f7e1ffff
    7986 
    7987 > color sel #ffe0e6ff
    7988 
    7989 > color sel #ffd7d7ff
    7990 
    7991 > color sel #ffd4d0ff
    7992 
    7993 > color sel #ffd3cdff
    7994 
    7995 > color sel #ffcec4ff
    7996 
    7997 > color sel #ffcec3ff
    7998 
    7999 > color sel #ffccc1ff
    8000 
    8001 > color sel #ffcbc0ff
    8002 
    8003 > color sel #ffcabfff
    8004 
    8005 > color sel #ffc9bdff
    8006 
    8007 > color sel #ffc7baff
    8008 
    8009 > color sel #ffc6b9ff
    8010 
    8011 > color sel #ffc5b9ff
    8012 
    8013 > color sel #ffb3a9ff
    8014 
    8015 > color sel #ff9385ff
    8016 
    8017 > color sel #ff947cff
    8018 
    8019 > color sel #ff9465ff
    8020 
    8021 > color sel #ff9657ff
    8022 
    8023 > color sel #ff985dff
    8024 
    8025 > color sel #ffbc9fff
    8026 
    8027 > color sel #3fa4ffff
    8028 
    8029 > color sel #49acffff
    8030 
    8031 > color sel #4aaeffff
    8032 
    8033 > color sel #4bafffff
    8034 
    8035 > color sel #70cdffff
    8036 
    8037 > color sel #77d4ffff
    8038 
    8039 > color sel #8ae7ffff
    8040 
    8041 > color sel #8de9ffff
    8042 
    8043 > color sel #93edffff
    8044 
    8045 > color sel #81e7ffff
    8046 
    8047 > color sel #73e2ffff
    8048 
    8049 > color sel #6ae0ffff
    8050 
    8051 > color sel #67dfffff
    8052 
    8053 > color sel #64dfffff
    8054 
    8055 > color sel #60dfffff
    8056 
    8057 > color sel #5cdeffff
    8058 
    8059 > color sel #59deffff
    8060 
    8061 > color sel #51dcffff
    8062 
    8063 > color sel #50dcffff
    8064 
    8065 > color sel #4ddcffff
    8066 
    8067 > color sel #49ddffff
    8068 
    8069 > color sel #46ddffff
    8070 
    8071 > color sel #34d9ffff
    8072 
    8073 > color sel #30d6ffff
    8074 
    8075 > color sel #34e0ffff
    8076 
    8077 > color sel #3ceaffff
    8078 
    8079 > color sel #49f6ffff
    8080 
    8081 > color sel #60fff1ff
    8082 
    8083 > color sel #60fff0ff
    8084 
    8085 > color sel #62ffebff
    8086 
    8087 > color sel #66ffe1ff
    8088 
    8089 > color sel #6affd6ff
    8090 
    8091 > color sel #6dffc7ff
    8092 
    8093 > color sel #6dffc5ff
    8094 
    8095 > color sel #66ffc4ff
    8096 
    8097 > color sel #34ffbfff
    8098 
    8099 > color sel #4effc4ff
    8100 
    8101 > color sel #55ffc6ff
    8102 
    8103 > color sel #59ffc8ff
    8104 
    8105 > color sel #60ffcbff
    8106 
    8107 > color sel #6cffceff
    8108 
    8109 > color sel #7affdfff
    8110 
    8111 > color sel #7affe0ff
    8112 
    8113 > color sel #79ffe4ff
    8114 
    8115 > color sel #78ffe6ff
    8116 
    8117 > color sel #76ffe7ff
    8118 
    8119 > color sel #74ffebff
    8120 
    8121 > color sel #72fff0ff
    8122 
    8123 > color sel #65e2d4ff
    8124 
    8125 > color sel #5acbbfff
    8126 
    8127 > select clear
    8128 
    8129 > select #40/B-C,G-H,L-M,Q-R,V-W,a-b,f-g,k-l,p-q,u-v,z,1,5-6,0,AA,AE-AF,AJ-
    8130 > AK,AO-AP,AT-AU,AY-AZ,Ad-Ae,Ai-Aj:192
    8131 
    8132 400 atoms, 360 bonds, 40 residues, 1 model selected 
    8133 
    8134 > select #40/B-C,G-H,L-M,Q-R,V-W,a-b,f-g,k-l,p-q,u-v,z,1,5-6,0,AA,AE-AF,AJ-
    8135 > AK,AO-AP,AT-AU,AY-AZ,Ad-Ae,Ai-Aj
    8136 
    8137 59400 atoms, 60320 bonds, 7680 residues, 1 model selected 
    8138 
    8139 > select #40/D-E,I-J,N-O,S-T,X-Y,c-d,h-i,m-n,r-s,w-x,2-3,7-8,AB-AC,AG-AH,AL-
    8140 > AM,AQ-AR,AV-AW,Aa-Ab,Af-Ag,Ak-Al:110
    8141 
    8142 360 atoms, 320 bonds, 40 residues, 1 model selected 
    8143 
    8144 > select #40/D-E,I-J,N-O,S-T,X-Y,c-d,h-i,m-n,r-s,w-x,2-3,7-8,AB-AC,AG-AH,AL-
    8145 > AM,AQ-AR,AV-AW,Aa-Ab,Af-Ag,Ak-Al
    8146 
    8147 36760 atoms, 37080 bonds, 4400 residues, 1 model selected 
    8148 
    8149 > color sel #009193ff
    8150 
    8151 > color sel #00b0b3ff
    8152 
    8153 > color sel #00b4b7ff
    8154 
    8155 > color sel #00b7baff
    8156 
    8157 > color sel #00b9bcff
    8158 
    8159 > select clear
    8160 
    8161 > select #40/B-C,G-H,L-M,Q-R,V-W,a-b,f-g,k-l,p-q,u-v,z,1,5-6,0,AA,AE-AF,AJ-
    8162 > AK,AO-AP,AT-AU,AY-AZ,Ad-Ae,Ai-Aj:192
    8163 
    8164 400 atoms, 360 bonds, 40 residues, 1 model selected 
    8165 
    8166 > select #40/B-C,G-H,L-M,Q-R,V-W,a-b,f-g,k-l,p-q,u-v,z,1,5-6,0,AA,AE-AF,AJ-
    8167 > AK,AO-AP,AT-AU,AY-AZ,Ad-Ae,Ai-Aj
    8168 
    8169 59400 atoms, 60320 bonds, 7680 residues, 1 model selected 
    8170 
    8171 > color sel #1e64bcff
    8172 
    8173 > color sel #1e65bcff
    8174 
    8175 > color sel #2068bcff
    8176 
    8177 > color sel #246cbcff
    8178 
    8179 > color sel #2870bcff
    8180 
    8181 > color sel #2871bdff
    8182 
    8183 > color sel #2c79cbff
    8184 
    8185 > color sel #338decff
    8186 
    8187 > select clear
    8188 
    8189 > select #40/A,F,K,P,U,Z,e,j,o,t,y,4,9,AD,AI,AN,AS,AX,Ac,Ah:118
    8190 
    8191 120 atoms, 100 bonds, 20 residues, 1 model selected 
    8192 
    8193 > select #40/A,F,K,P,U,Z,e,j,o,t,y,4,9,AD,AI,AN,AS,AX,Ac,Ah
    8194 
    8195 19860 atoms, 20240 bonds, 2360 residues, 1 model selected 
    8196 
    8197 > select #40/D-E,I-J,N-O,S-T,X-Y,c-d,h-i,m-n,r-s,w-x,2-3,7-8,AB-AC,AG-AH,AL-
    8198 > AM,AQ-AR,AV-AW,Aa-Ab,Af-Ag,Ak-Al:110
    8199 
    8200 360 atoms, 320 bonds, 40 residues, 1 model selected 
    8201 
    8202 > select #40/D-E,I-J,N-O,S-T,X-Y,c-d,h-i,m-n,r-s,w-x,2-3,7-8,AB-AC,AG-AH,AL-
    8203 > AM,AQ-AR,AV-AW,Aa-Ab,Af-Ag,Ak-Al
    8204 
    8205 36760 atoms, 37080 bonds, 4400 residues, 1 model selected 
    8206 
    8207 > color sel #e0c2ecff
    8208 
    8209 > color sel #e1c2ecff
    8210 
    8211 > color sel #e1beecff
    8212 
    8213 > color sel #e1bdecff
    8214 
    8215 > color sel #e1baecff
    8216 
    8217 > color sel #ecbce9ff
    8218 
    8219 > color sel #ecb6d5ff
    8220 
    8221 > color sel #ecb5cfff
    8222 
    8223 > color sel #ecb6c9ff
    8224 
    8225 > color sel #ecb8c4ff
    8226 
    8227 > color sel #ecb8c3ff
    8228 
    8229 > color sel #ecbcc4ff
    8230 
    8231 > color sel #ecc2c5ff
    8232 
    8233 > color sel #eccdcbff
    8234 
    8235 > color sel #ecded5ff
    8236 
    8237 > color sel #ecddd5ff
    8238 
    8239 > color sel #ecdbd2ff
    8240 
    8241 > color sel #ecdbd1ff
    8242 
    8243 > color sel #ecc5beff
    8244 
    8245 > color sel #ecbcb5ff
    8246 
    8247 > color sel #ecb8b1ff
    8248 
    8249 > color sel #ecb7b1ff
    8250 
    8251 > color sel #ecb8a9ff
    8252 
    8253 > color sel #ecbcb6ff
    8254 
    8255 > color sel #ecc4d1ff
    8256 
    8257 > color sel #ecc4e0ff
    8258 
    8259 > color sel #ecc2e7ff
    8260 
    8261 > color sel #e6bfecff
    8262 
    8263 > color sel #d7b7ecff
    8264 
    8265 > color sel #c0a9ecff
    8266 
    8267 > color sel #a998ecff
    8268 
    8269 > color sel #a393ecff
    8270 
    8271 > color sel #a090ecff
    8272 
    8273 > color sel #9e8decff
    8274 
    8275 > color sel #9d8cecff
    8276 
    8277 > color sel #9184ecff
    8278 
    8279 > color sel #7779ecff
    8280 
    8281 > color sel #6c79ecff
    8282 
    8283 > color sel #6a79ecff
    8284 
    8285 > color sel #6078ecff
    8286 
    8287 > color sel #2e55ecff
    8288 
    8289 > color sel #1f43ecff
    8290 
    8291 > color sel #0922ecff
    8292 
    8293 > color sel #000fecff
    8294 
    8295 > color sel #000becff
    8296 
    8297 > color sel #0008ecff
    8298 
    8299 > color sel #0005ecff
    8300 
    8301 > color sel #0400ecff
    8302 
    8303 > color sel #0600ecff
    8304 
    8305 > select #40/B-C,G-H,L-M,Q-R,V-W,a-b,f-g,k-l,p-q,u-v,z,1,5-6,0,AA,AE-AF,AJ-
    8306 > AK,AO-AP,AT-AU,AY-AZ,Ad-Ae,Ai-Aj:188-192
    8307 
    8308 1240 atoms, 1200 bonds, 200 residues, 1 model selected 
    8309 
    8310 > select #40/B-C,G-H,L-M,Q-R,V-W,a-b,f-g,k-l,p-q,u-v,z,1,5-6,0,AA,AE-AF,AJ-
    8311 > AK,AO-AP,AT-AU,AY-AZ,Ad-Ae,Ai-Aj
    8312 
    8313 59400 atoms, 60320 bonds, 7680 residues, 1 model selected 
    8314 
    8315 > color sel #ec7615ff
    8316 
    8317 > color sel #ec7715ff
    8318 
    8319 > color sel #ec7d11ff
    8320 
    8321 > color sel #ec800eff
    8322 
    8323 > color sel #ec7e0dff
    8324 
    8325 > color sel #ec7d0dff
    8326 
    8327 > color sel #ec7611ff
    8328 
    8329 > color sel #bf5f0dff
    8330 
    8331 > color sel #c3610eff
    8332 
    8333 > select add #40
    8334 
    8335 116020 atoms, 117640 bonds, 14440 residues, 1 model selected 
    8336 
    8337 > hide sel cartoons
    8338 
    8339 > show sel surfaces
    8340 
    8341 > select clear
    8342 
    8343 > select #40/B-C,G-H,L-M,Q-R,V-W,a-b,f-g,k-l,p-q,u-v,z,1,5-6,0,AA,AE-AF,AJ-
    8344 > AK,AO-AP,AT-AU,AY-AZ,Ad-Ae,Ai-Aj:1
    8345 
    8346 320 atoms, 280 bonds, 40 residues, 1 model selected 
    8347 
    8348 > select #40/B-C,G-H,L-M,Q-R,V-W,a-b,f-g,k-l,p-q,u-v,z,1,5-6,0,AA,AE-AF,AJ-
    8349 > AK,AO-AP,AT-AU,AY-AZ,Ad-Ae,Ai-Aj:1
    8350 
    8351 320 atoms, 280 bonds, 40 residues, 1 model selected 
    8352 
    8353 > select #40/B-C,G-H,L-M,Q-R,V-W,a-b,f-g,k-l,p-q,u-v,z,1,5-6,0,AA,AE-AF,AJ-
    8354 > AK,AO-AP,AT-AU,AY-AZ,Ad-Ae,Ai-Aj:1
    8355 
    8356 320 atoms, 280 bonds, 40 residues, 1 model selected 
    8357 
    8358 > select #40/B-C,G-H,L-M,Q-R,V-W,a-b,f-g,k-l,p-q,u-v,z,1,5-6,0,AA,AE-AF,AJ-
    8359 > AK,AO-AP,AT-AU,AY-AZ,Ad-Ae,Ai-Aj:192
    8360 
    8361 400 atoms, 360 bonds, 40 residues, 1 model selected 
    8362 
    8363 > select #40/B-C,G-H,L-M,Q-R,V-W,a-b,f-g,k-l,p-q,u-v,z,1,5-6,0,AA,AE-AF,AJ-
    8364 > AK,AO-AP,AT-AU,AY-AZ,Ad-Ae,Ai-Aj:149-192
    8365 
    8366 13240 atoms, 13440 bonds, 1760 residues, 1 model selected 
    8367 
    8368 > hide sel cartoons
    8369 
    8370 > hide sel surfaces
    8371 
    8372 > select clear
    8373 
    8374 > show #!88 models
    8375 
    8376 > show #!89 models
    8377 
    8378 > color #88 #70887a73 models
    8379 
    8380 > show #!107 models
    8381 
    8382 > show #!107-232 models
    8383 
    8384 > color #214 #a9a9a970 models
    8385 
    8386 > color #214 #a9a9a973 models
    8387 
    8388 > color #107-232 #a9a9a973 models
    8389 
    8390 > hide #!209 models
    8391 
    8392 > show #!209 models
    8393 
    8394 > color #209 #9e9e9e73 models
    8395 
    8396 > color #209 #9e9e9eff models
    8397 
    8398 > color #3 #797979ff models
    8399 
    8400 > color #209 #797979ff models
    8401 
    8402 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project files/C.jejuni/For-1st-
    8403 > paper/For-FlgX/Manuscript_only_FlgX/Local_FLgX/Local-
    8404 > model/4FlgX-5MotA_inmap-copy.pdb"
    8405 
    8406 Chain information for 4FlgX-5MotA_inmap-copy.pdb #44 
    8407 --- 
    8408 Chain | Description 
    8409 A B C D | No description available 
    8410 E F G H I | No description available 
    8411  
    8412 
    8413 > hide #!13 models
    8414 
    8415 > hide #!14 models
    8416 
    8417 > hide #!15 models
    8418 
    8419 > hide #16 models
    8420 
    8421 > show #9 models
    8422 
    8423 > hide #9 models
    8424 
    8425 > show #!8 models
    8426 
    8427 > hide #!8 models
    8428 
    8429 > show #9 models
    8430 
    8431 > show #!8 models
    8432 
    8433 > hide #!8 models
    8434 
    8435 > matchmaker #44 to #9
    8436 
    8437 Parameters 
    8438 --- 
    8439 Chain pairing | bb 
    8440 Alignment algorithm | Needleman-Wunsch 
    8441 Similarity matrix | BLOSUM-62 
    8442 SS fraction | 0.3 
    8443 Gap open (HH/SS/other) | 18/18/6 
    8444 Gap extend | 1 
    8445 SS matrix |  |  | H | S | O 
    8446 ---|---|---|--- 
    8447 H | 6 | -9 | -6 
    8448 S |  | 6 | -6 
    8449 O |  |  | 4 
    8450 Iteration cutoff | 2 
    8451  
    8452 Matchmaker combination, chain D (#9) with 4FlgX-5MotA_inmap-copy.pdb, chain E
    8453 (#44), sequence alignment score = 1258.4 
    8454 RMSD between 252 pruned atom pairs is 0.563 angstroms; (across all 255 pairs:
    8455 0.627) 
    8456  
    8457 
    8458 > select add #44
    8459 
    8460 15361 atoms, 15612 bonds, 1950 residues, 1 model selected 
    8461 
    8462 > split #44
    8463 
    8464 Split 4FlgX-5MotA_inmap-copy.pdb (#44) into 9 models 
    8465 Chain information for 4FlgX-5MotA_inmap-copy.pdb A #44.1 
    8466 --- 
    8467 Chain | Description 
    8468 A | No description available 
    8469  
    8470 Chain information for 4FlgX-5MotA_inmap-copy.pdb B #44.2 
    8471 --- 
    8472 Chain | Description 
    8473 B | No description available 
    8474  
    8475 Chain information for 4FlgX-5MotA_inmap-copy.pdb C #44.3 
    8476 --- 
    8477 Chain | Description 
    8478 C | No description available 
    8479  
    8480 Chain information for 4FlgX-5MotA_inmap-copy.pdb D #44.4 
    8481 --- 
    8482 Chain | Description 
    8483 D | No description available 
    8484  
    8485 Chain information for 4FlgX-5MotA_inmap-copy.pdb E #44.5 
    8486 --- 
    8487 Chain | Description 
    8488 E | No description available 
    8489  
    8490 Chain information for 4FlgX-5MotA_inmap-copy.pdb F #44.6 
    8491 --- 
    8492 Chain | Description 
    8493 F | No description available 
    8494  
    8495 Chain information for 4FlgX-5MotA_inmap-copy.pdb G #44.7 
    8496 --- 
    8497 Chain | Description 
    8498 G | No description available 
    8499  
    8500 Chain information for 4FlgX-5MotA_inmap-copy.pdb H #44.8 
    8501 --- 
    8502 Chain | Description 
    8503 H | No description available 
    8504  
    8505 Chain information for 4FlgX-5MotA_inmap-copy.pdb I #44.9 
    8506 --- 
    8507 Chain | Description 
    8508 I | No description available 
    8509  
    8510 
    8511 > close #44.5-9
    8512 
    8513 > combine #44
    8514 
    8515 > hide #!44 models
    8516 
    8517 > hide #47 models
    8518 
    8519 > show #47 models
    8520 
    8521 > select add #47
    8522 
    8523 5476 atoms, 5552 bonds, 660 residues, 1 model selected 
    8524 
    8525 > view orient
    8526 
    8527 > turn x 90
    8528 
    8529 > hide sel atoms
    8530 
    8531 > show sel surfaces
    8532 
    8533 > view matrix models
    8534 > #47,-0.19623,-0.97701,0.083329,717.39,0.97473,-0.20361,-0.091917,308.73,0.10677,0.063186,0.99227,61.122
    8535 
    8536 > undo
    8537 
    8538 > ui mousemode right "rotate selected models"
    8539 
    8540 > view matrix models
    8541 > #47,0.41432,0.90438,-0.10217,-279.29,-0.90385,0.42203,0.070382,561.89,0.10677,0.063186,0.99227,61.122
    8542 
    8543 > select clear
    8544 
    8545 > color #47 #bfb624ff
    8546 
    8547 > color #47 #bfa024ff
    8548 
    8549 > color #47 #bfbb20ff
    8550 
    8551 > color #47 #bfb987ff
    8552 
    8553 > color #47 #bfbca2ff
    8554 
    8555 > color #47 #bfbba7ff
    8556 
    8557 > color #47 #bfbd9dff
    8558 
    8559 > sym #47 C17 copies true center #3
    8560 
    8561 Made 17 copies for combination symmetry C17 
    8562 
    8563 > hide #!48 models
    8564 
    8565 > show #!47 models
    8566 
    8567 > show #!48 models
    8568 
    8569 > close #48
    8570 
    8571 > select add #47
    8572 
    8573 5476 atoms, 5552 bonds, 660 residues, 1 model selected 
    8574 
    8575 > hide sel surfaces
    8576 
    8577 > show sel cartoons
    8578 
    8579 > ui mousemode right "translate selected models"
    8580 
    8581 > view matrix models
    8582 > #47,0.41432,0.90438,-0.10217,-280.8,-0.90385,0.42203,0.070382,577.04,0.10677,0.063186,0.99227,62.914
    8583 
    8584 > ui mousemode right "rotate selected models"
    8585 
    8586 > view matrix models
    8587 > #47,0.39866,0.90064,-0.17296,-260.72,-0.90992,0.41199,0.047989,587.71,0.11448,0.13825,0.98376,28.449
    8588 
    8589 > sym #47 C17 copies true center #3
    8590 
    8591 Made 17 copies for combination symmetry C17 
    8592 
    8593 > hide #9 models
    8594 
    8595 > show #!13 models
    8596 
    8597 > show #!14 models
    8598 
    8599 > show #!15 models
    8600 
    8601 > select subtract #47
    8602 
    8603 4 models selected 
    8604 
    8605 > select add #48
    8606 
    8607 93092 atoms, 94384 bonds, 11220 residues, 18 models selected 
    8608 
    8609 > select add #46
    8610 
    8611 288386 atoms, 292582 bonds, 37752 residues, 19 models selected 
    8612 
    8613 > select add #45
    8614 
    8615 456144 atoms, 462753 bonds, 16 pseudobonds, 60367 residues, 21 models selected 
    8616 
    8617 > select add #40
    8618 
    8619 572164 atoms, 580393 bonds, 16 pseudobonds, 74807 residues, 22 models selected 
    8620 
    8621 > select subtract #40
    8622 
    8623 456144 atoms, 462753 bonds, 16 pseudobonds, 60367 residues, 121 models
    8624 selected 
    8625 
    8626 > hide sel cartoons
    8627 
    8628 > show sel surfaces
    8629 
    8630 > select clear
    8631 
    8632 > select add #13
    8633 
    8634 381633 atoms, 388042 bonds, 48671 residues, 18 models selected 
    8635 
    8636 > select add #14
    8637 
    8638 667879 atoms, 679830 bonds, 83453 residues, 36 models selected 
    8639 
    8640 > select add #15
    8641 
    8642 903091 atoms, 918714 bonds, 17 pseudobonds, 112574 residues, 224 models
    8643 selected 
    8644 
    8645 > show #16 models
    8646 
    8647 > show sel surfaces
    8648 
    8649 > select clear
    8650 
    8651 > view P1
    8652 
    8653 > view P2
    8654 
    8655 > show #!43 models
    8656 
    8657 > close #42#41
    8658 
    8659 > show #!37 models
    8660 
    8661 > show #!38 models
    8662 
    8663 > turn x -10
    8664 
    8665 > select add #43
    8666 
    8667 272320 atoms, 275760 bonds, 34560 residues, 241 models selected 
    8668 
    8669 > show sel surfaces
    8670 
    8671 > select clear
    8672 
    8673 > save /Users/shoichitachiyama/Desktop/Full-model-CJ.png supersample 2
    8674 > transparentBackground true
    8675 
    8676 > ui tool show "Side View"
    8677 
    8678 > save /Users/shoichitachiyama/Desktop/CJ_Whole_models.cxs includeMaps true
    8679 
    8680 > color #38 #a9a9a94d models
    8681 
    8682 > show #!3 models
    8683 
    8684 > hide #!3 models
    8685 
    8686 > color #37 #a9a9a94d models
    8687 
    8688 > color #107-232 #a9a9a94d models
    8689 
    8690 > hide #!209 models
    8691 
    8692 > show #!209 models
    8693 
    8694 > hide #!209 models
    8695 
    8696 > show #!209 models
    8697 
    8698 > color #209 #797979ff models
    8699 
    8700 > save /Users/shoichitachiyama/Desktop/Full-model-CJ.png supersample 2
    8701 > transparentBackground true
    8702 
    8703 > view name Pa
    8704 
    8705 > volume #!37-38,88-89,107-209,214-232 showOutlineBox true
    8706 
    8707 > volume #!37-38,88-89,107-209,214-232 showOutlineBox false
    8708 
    8709 > volume #!37-38,88-89,107-209,214-232 showOutlineBox true
    8710 
    8711 > volume #!37-38,88-89,107-209,214-232 showOutlineBox false
    8712 
    8713 > volume #88 region 120,0,0,250,250,250
    8714 
    8715 > volume #89 region 120,0,0,250,250,250
    8716 
    8717 > volume #209 region 120,0,0,250,250,250
    8718 
    8719 > show #!83 models
    8720 
    8721 > color #83 #797979ff models
    8722 
    8723 > hide #!114 models
    8724 
    8725 > hide #!115 models
    8726 
    8727 > hide #!116 models
    8728 
    8729 > hide #!117 models
    8730 
    8731 > hide #!118 models
    8732 
    8733 > hide #!119 models
    8734 
    8735 > hide #!120 models
    8736 
    8737 > hide #!113 models
    8738 
    8739 > hide #!14 models
    8740 
    8741 > show #!14 models
    8742 
    8743 > hide #!14.15 models
    8744 
    8745 > hide #!14.16 models
    8746 
    8747 > hide #!14.17 models
    8748 
    8749 > hide #!14.1 models
    8750 
    8751 > hide #!14.2 models
    8752 
    8753 > hide #!14.3 models
    8754 
    8755 > hide #!14.4 models
    8756 
    8757 > hide #!13.5 models
    8758 
    8759 > show #!14.4 models
    8760 
    8761 > show #!13.5 models
    8762 
    8763 > hide #!13.15 models
    8764 
    8765 > hide #!13.16 models
    8766 
    8767 > hide #!13.17 models
    8768 
    8769 > hide #!13.1 models
    8770 
    8771 > hide #!13.2 models
    8772 
    8773 > hide #!13.3 models
    8774 
    8775 > hide #!15.15 models
    8776 
    8777 > hide #!15.16 models
    8778 
    8779 > hide #!15.17 models
    8780 
    8781 > hide #!15.3 models
    8782 
    8783 > hide #!15.2 models
    8784 
    8785 > hide #!15.1 models
    8786 
    8787 > hide #!220 models
    8788 
    8789 > hide #!221 models
    8790 
    8791 > hide #!222 models
    8792 
    8793 > hide #!223 models
    8794 
    8795 > hide #!224 models
    8796 
    8797 > hide #!225 models
    8798 
    8799 > hide #!198 models
    8800 
    8801 > show #!198 models
    8802 
    8803 > hide #!199 models
    8804 
    8805 > hide #!200 models
    8806 
    8807 > hide #!201 models
    8808 
    8809 > hide #!202 models
    8810 
    8811 > hide #!203 models
    8812 
    8813 > hide #!204 models
    8814 
    8815 > hide #!205 models
    8816 
    8817 > hide #!178 models
    8818 
    8819 > show #!178 models
    8820 
    8821 > hide #!182 models
    8822 
    8823 > hide #!183 models
    8824 
    8825 > hide #!184 models
    8826 
    8827 > hide #!185 models
    8828 
    8829 > hide #!186 models
    8830 
    8831 > hide #!181 models
    8832 
    8833 > hide #!164 models
    8834 
    8835 > hide #!165 models
    8836 
    8837 > hide #!166 models
    8838 
    8839 > hide #!167 models
    8840 
    8841 > hide #!168 models
    8842 
    8843 > hide #!163 models
    8844 
    8845 > show #!163 models
    8846 
    8847 > hide #!169 models
    8848 
    8849 > hide #!170 models
    8850 
    8851 > show #!170 models
    8852 
    8853 > hide #!147 models
    8854 
    8855 > hide #!148 models
    8856 
    8857 > hide #!149 models
    8858 
    8859 > hide #!150 models
    8860 
    8861 > hide #!151 models
    8862 
    8863 > hide #!152 models
    8864 
    8865 > hide #!130 models
    8866 
    8867 > hide #!131 models
    8868 
    8869 > hide #!132 models
    8870 
    8871 > hide #!133 models
    8872 
    8873 > hide #!134 models
    8874 
    8875 > hide #!135 models
    8876 
    8877 > volume #231 region 120,0,0,250,250,250
    8878 
    8879 > hide #!48.15 models
    8880 
    8881 > hide #!48.16 models
    8882 
    8883 > hide #!48.17 models
    8884 
    8885 > hide #!48.1 models
    8886 
    8887 > hide #!48.2 models
    8888 
    8889 > hide #!48.3 models
    8890 
    8891 > hide #!219 models
    8892 
    8893 > show #!225 models
    8894 
    8895 > volume #38 region 120,0,0,250,250,250
    8896 
    8897 > hide #!43.20 models
    8898 
    8899 > hide #!43.21 models
    8900 
    8901 > hide #!43.22 models
    8902 
    8903 > hide #!43.23 models
    8904 
    8905 > hide #!43.24 models
    8906 
    8907 > hide #!43.25 models
    8908 
    8909 > hide #!43.27 models
    8910 
    8911 > hide #!43.28 models
    8912 
    8913 > hide #!43.29 models
    8914 
    8915 > hide #!43.30 models
    8916 
    8917 > hide #!43.26 models
    8918 
    8919 > hide #!43.31 models
    8920 
    8921 > hide #!43.32 models
    8922 
    8923 > hide #!43.33 models
    8924 
    8925 > show #!43.20 models
    8926 
    8927 > show #!43.33 models
    8928 
    8929 > hide #!40.5 models
    8930 
    8931 > show #40.5 models
    8932 
    8933 > hide #40.5 models
    8934 
    8935 > hide #!40.4 models
    8936 
    8937 > hide #!40.3 models
    8938 
    8939 > hide #!40.10 models
    8940 
    8941 > hide #!40.9 models
    8942 
    8943 > hide #!40.8 models
    8944 
    8945 > hide #40.1 models
    8946 
    8947 > show #40.1 models
    8948 
    8949 > hide #40.7 models
    8950 
    8951 > hide #40.6 models
    8952 
    8953 > hide #40.11 models
    8954 
    8955 > show #40.11 models
    8956 
    8957 > hide #40.2 models
    8958 
    8959 > hide #40.1 models
    8960 
    8961 > show #40.2 models
    8962 
    8963 > show #40.1 models
    8964 
    8965 > hide #40.2 models
    8966 
    8967 > hide #40.1 models
    8968 
    8969 > hide #40.100 models
    8970 
    8971 > hide #!40.99 models
    8972 
    8973 > hide #!40.98 models
    8974 
    8975 > hide #!40.97 models
    8976 
    8977 > hide #40.95 models
    8978 
    8979 > hide #!40.94 models
    8980 
    8981 > hide #!40.93 models
    8982 
    8983 > hide #40.96 models
    8984 
    8985 > hide #!40.92 models
    8986 
    8987 > hide #40.91 models
    8988 
    8989 > hide #40.90 models
    8990 
    8991 > hide #!40.89 models
    8992 
    8993 Drag select of combination_AB SES surface, 14614 of 166180 triangles,
    8994 combination_AC SES surface, 6175 of 163380 triangles 
    8995 
    8996 > hide #!40.13 models
    8997 
    8998 > hide #!40.14 models
    8999 
    9000 > select add #40.14
    9001 
    9002 919 atoms, 110 residues, 3 models selected 
    9003 
    9004 > select subtract #40.13
    9005 
    9006 919 atoms, 110 residues, 2 models selected 
    9007 
    9008 > hide #40.12 models
    9009 
    9010 > select subtract #40.14
    9011 
    9012 1 model selected 
    9013 
    9014 > save /Users/shoichitachiyama/Desktop/Full-model-CJ-Cut.png supersample 2
    9015 > transparentBackground true
    9016 
    9017 > save /Users/shoichitachiyama/Desktop/CJ_Whole_models-Cut.cxs includeMaps
    9018 > true
    9019 
    9020 
    9021 ===== Log before crash end =====
    9022 
    9023 Log:
    9024 UCSF ChimeraX version: 1.8 (2024-06-10) 
    9025 © 2016-2024 Regents of the University of California. All rights reserved. 
    9026 
    9027 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    9028 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    9029 > review/Updated_Figures/09122025/For_Composition-maps/For-Zoom_in/ZoomPflAB-
    9030 > Transparent_Building_Whole_Model_09102025.cxs"
    9031 
    9032 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    9033 level 0.0137, step 1, values float32 
    9034 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    9035 step 1, values float32 
    9036 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    9037 level 0.0137, step 1, values float32 
    9038 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    9039 level 0.0137, step 1, values float32 
    9040 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    9041 level 0.027, step 1, values float32 
    9042 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    9043 level 0.0166, step 1, values float32 
    9044 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    9045 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9046 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    9047 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9048 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    9049 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9050 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    9051 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9052 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    9053 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9054 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    9055 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9056 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    9057 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9058 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    9059 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9060 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    9061 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9062 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    9063 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9064 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    9065 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9066 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    9067 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9068 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    9069 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9070 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    9071 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9072 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    9073 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9074 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    9075 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9076 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    9077 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9078 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    9079 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9080 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    9081 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9082 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    9083 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9084 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    9085 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9086 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    9087 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9088 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    9089 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9090 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    9091 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9092 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    9093 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9094 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    9095 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9096 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    9097 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9098 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    9099 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9100 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    9101 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9102 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    9103 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9104 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    9105 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9106 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    9107 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9108 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    9109 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9110 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    9111 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9112 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    9113 shown at level 0.000785, step 1, values float32 
    9114 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    9115 shown at level 0.000785, step 1, values float32 
    9116 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    9117 shown at level 0.000785, step 1, values float32 
    9118 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    9119 shown at level 0.000785, step 1, values float32 
    9120 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    9121 shown at level 0.000785, step 1, values float32 
    9122 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    9123 shown at level 0.000785, step 1, values float32 
    9124 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    9125 shown at level 0.000785, step 1, values float32 
    9126 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    9127 shown at level 0.000785, step 1, values float32 
    9128 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    9129 shown at level 0.000785, step 1, values float32 
    9130 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    9131 shown at level 0.000785, step 1, values float32 
    9132 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    9133 shown at level 0.000785, step 1, values float32 
    9134 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    9135 shown at level 0.000785, step 1, values float32 
    9136 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    9137 shown at level 0.000785, step 1, values float32 
    9138 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    9139 shown at level 0.000785, step 1, values float32 
    9140 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    9141 shown at level 0.000785, step 1, values float32 
    9142 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    9143 shown at level 0.000785, step 1, values float32 
    9144 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    9145 shown at level 0.000785, step 1, values float32 
    9146 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    9147 shown at level 0.00107, step 1, values float32 
    9148 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    9149 shown at level 0.00107, step 1, values float32 
    9150 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    9151 shown at level 0.00107, step 1, values float32 
    9152 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    9153 shown at level 0.00107, step 1, values float32 
    9154 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    9155 shown at level 0.00107, step 1, values float32 
    9156 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    9157 shown at level 0.00107, step 1, values float32 
    9158 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    9159 shown at level 0.00107, step 1, values float32 
    9160 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    9161 shown at level 0.00107, step 1, values float32 
    9162 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    9163 shown at level 0.00107, step 1, values float32 
    9164 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    9165 shown at level 0.00107, step 1, values float32 
    9166 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    9167 shown at level 0.00107, step 1, values float32 
    9168 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    9169 shown at level 0.00107, step 1, values float32 
    9170 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    9171 shown at level 0.00107, step 1, values float32 
    9172 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    9173 shown at level 0.00107, step 1, values float32 
    9174 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    9175 shown at level 0.00107, step 1, values float32 
    9176 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    9177 shown at level 0.00107, step 1, values float32 
    9178 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    9179 shown at level 0.00107, step 1, values float32 
    9180 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    9181 shown at level 0.000848, step 1, values float32 
    9182 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    9183 shown at level 0.000848, step 1, values float32 
    9184 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    9185 shown at level 0.000848, step 1, values float32 
    9186 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    9187 shown at level 0.000848, step 1, values float32 
    9188 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    9189 shown at level 0.000848, step 1, values float32 
    9190 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    9191 shown at level 0.000848, step 1, values float32 
    9192 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    9193 shown at level 0.000848, step 1, values float32 
    9194 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    9195 shown at level 0.000848, step 1, values float32 
    9196 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    9197 shown at level 0.000848, step 1, values float32 
    9198 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    9199 shown at level 0.000848, step 1, values float32 
    9200 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    9201 shown at level 0.000848, step 1, values float32 
    9202 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    9203 shown at level 0.000848, step 1, values float32 
    9204 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    9205 shown at level 0.000848, step 1, values float32 
    9206 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    9207 shown at level 0.000848, step 1, values float32 
    9208 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    9209 shown at level 0.000848, step 1, values float32 
    9210 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    9211 shown at level 0.000848, step 1, values float32 
    9212 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    9213 shown at level 0.000848, step 1, values float32 
    9214 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    9215 2.14, shown at level 0.000997, step 1, values float32 
    9216 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    9217 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9218 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    9219 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9220 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    9221 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9222 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    9223 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9224 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    9225 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9226 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    9227 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9228 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    9229 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9230 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    9231 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9232 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    9233 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9234 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    9235 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9236 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    9237 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9238 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    9239 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9240 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    9241 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9242 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    9243 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9244 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    9245 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9246 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    9247 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9248 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    9249 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9250 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    9251 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9252 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    9253 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9254 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    9255 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9256 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    9257 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9258 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    9259 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9260 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    9261 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9262 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    9263 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9264 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    9265 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9266 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    9267 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9268 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    9269 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9270 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    9271 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9272 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    9273 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9274 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    9275 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9276 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    9277 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9278 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    9279 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9280 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    9281 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9282 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    9283 shown at level 0.0112, step 1, values float32 
    9284 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    9285 2.14, shown at level 0.00974, step 1, values float32 
    9286 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    9287 level 0.157, step 1, values float32 
    9288 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    9289 0.0283, step 1, values float32 
    9290 Opened 1unit_PflABCD.mrc as #5, grid size 200,200,200, pixel 2.14, shown at
    9291 level 0.00404, step 1, values float32 
    9292 Opened PflC_Fit_region.mrc as #18, grid size 200,200,200, pixel 2.14, shown at
    9293 level 0.00107, step 1, values float32 
    9294 Opened PflC_Unfit_region.mrc as #19, grid size 200,200,200, pixel 2.14, shown
    9295 at level 0.00107, step 1, values float32 
    9296 Opened 1xPflD.mrc gaussian copy as #20, grid size 200,200,200, pixel 2.14,
    9297 shown at level 0.000785, step 1, values float32 
    9298 Opened C17-FlgY_New_imasked as #21, grid size 256,256,256, pixel 2.14, shown
    9299 at level 0.012, step 1, values float32 
    9300 Opened C17-FlgY_New_imasked_imasked as #22, grid size 256,256,256, pixel 2.14,
    9301 shown at level 0.012, step 1, values float32 
    9302 Opened C17-FlgY_New_imasked as #23, grid size 256,256,256, pixel 2.14, shown
    9303 at level 0.0112, step 1, values float32 
    9304 Log from Wed Sep 10 13:06:53 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    9305 © 2016-2024 Regents of the University of California. All rights reserved. 
    9306 
    9307 > open /Users/shoichi/Desktop/For_Composition-
    9308 > maps/Building_Whole_Model_09102025_Backup.cxs
    9309 
    9310 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    9311 level 0.0137, step 1, values float32 
    9312 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    9313 step 1, values float32 
    9314 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    9315 level 0.0137, step 1, values float32 
    9316 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    9317 level 0.0137, step 1, values float32 
    9318 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    9319 level 0.027, step 1, values float32 
    9320 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    9321 step 1, values float32 
    9322 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    9323 level 0.0166, step 1, values float32 
    9324 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    9325 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9326 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    9327 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9328 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    9329 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9330 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    9331 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9332 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    9333 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9334 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    9335 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9336 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    9337 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9338 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    9339 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9340 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    9341 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9342 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    9343 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9344 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    9345 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9346 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    9347 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9348 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    9349 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9350 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    9351 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9352 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    9353 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9354 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    9355 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9356 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    9357 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9358 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    9359 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9360 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    9361 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9362 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    9363 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9364 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    9365 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9366 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    9367 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9368 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    9369 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9370 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    9371 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9372 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    9373 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9374 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    9375 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9376 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    9377 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9378 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    9379 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9380 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    9381 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9382 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    9383 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9384 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    9385 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9386 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    9387 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9388 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    9389 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9390 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    9391 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9392 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    9393 shown at level 0.000785, step 1, values float32 
    9394 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    9395 shown at level 0.000785, step 1, values float32 
    9396 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    9397 shown at level 0.000785, step 1, values float32 
    9398 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    9399 shown at level 0.000785, step 1, values float32 
    9400 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    9401 shown at level 0.000785, step 1, values float32 
    9402 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    9403 shown at level 0.000785, step 1, values float32 
    9404 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    9405 shown at level 0.000785, step 1, values float32 
    9406 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    9407 shown at level 0.000785, step 1, values float32 
    9408 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    9409 shown at level 0.000785, step 1, values float32 
    9410 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    9411 shown at level 0.000785, step 1, values float32 
    9412 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    9413 shown at level 0.000785, step 1, values float32 
    9414 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    9415 shown at level 0.000785, step 1, values float32 
    9416 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    9417 shown at level 0.000785, step 1, values float32 
    9418 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    9419 shown at level 0.000785, step 1, values float32 
    9420 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    9421 shown at level 0.000785, step 1, values float32 
    9422 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    9423 shown at level 0.000785, step 1, values float32 
    9424 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    9425 shown at level 0.000785, step 1, values float32 
    9426 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    9427 shown at level 0.00107, step 1, values float32 
    9428 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    9429 shown at level 0.00107, step 1, values float32 
    9430 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    9431 shown at level 0.00107, step 1, values float32 
    9432 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    9433 shown at level 0.00107, step 1, values float32 
    9434 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    9435 shown at level 0.00107, step 1, values float32 
    9436 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    9437 shown at level 0.00107, step 1, values float32 
    9438 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    9439 shown at level 0.00107, step 1, values float32 
    9440 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    9441 shown at level 0.00107, step 1, values float32 
    9442 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    9443 shown at level 0.00107, step 1, values float32 
    9444 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    9445 shown at level 0.00107, step 1, values float32 
    9446 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    9447 shown at level 0.00107, step 1, values float32 
    9448 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    9449 shown at level 0.00107, step 1, values float32 
    9450 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    9451 shown at level 0.00107, step 1, values float32 
    9452 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    9453 shown at level 0.00107, step 1, values float32 
    9454 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    9455 shown at level 0.00107, step 1, values float32 
    9456 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    9457 shown at level 0.00107, step 1, values float32 
    9458 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    9459 shown at level 0.00107, step 1, values float32 
    9460 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    9461 shown at level 0.000848, step 1, values float32 
    9462 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    9463 shown at level 0.000848, step 1, values float32 
    9464 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    9465 shown at level 0.000848, step 1, values float32 
    9466 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    9467 shown at level 0.000848, step 1, values float32 
    9468 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    9469 shown at level 0.000848, step 1, values float32 
    9470 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    9471 shown at level 0.000848, step 1, values float32 
    9472 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    9473 shown at level 0.000848, step 1, values float32 
    9474 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    9475 shown at level 0.000848, step 1, values float32 
    9476 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    9477 shown at level 0.000848, step 1, values float32 
    9478 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    9479 shown at level 0.000848, step 1, values float32 
    9480 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    9481 shown at level 0.000848, step 1, values float32 
    9482 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    9483 shown at level 0.000848, step 1, values float32 
    9484 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    9485 shown at level 0.000848, step 1, values float32 
    9486 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    9487 shown at level 0.000848, step 1, values float32 
    9488 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    9489 shown at level 0.000848, step 1, values float32 
    9490 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    9491 shown at level 0.000848, step 1, values float32 
    9492 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    9493 shown at level 0.000848, step 1, values float32 
    9494 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    9495 2.14, shown at level 0.000997, step 1, values float32 
    9496 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    9497 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9498 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    9499 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9500 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    9501 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9502 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    9503 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9504 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    9505 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9506 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    9507 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9508 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    9509 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9510 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    9511 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9512 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    9513 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9514 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    9515 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9516 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    9517 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9518 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    9519 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9520 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    9521 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9522 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    9523 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9524 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    9525 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9526 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    9527 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9528 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    9529 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9530 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    9531 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9532 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    9533 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9534 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    9535 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9536 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    9537 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9538 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    9539 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9540 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    9541 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9542 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    9543 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9544 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    9545 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9546 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    9547 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9548 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    9549 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9550 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    9551 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9552 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    9553 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9554 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    9555 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9556 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    9557 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9558 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    9559 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9560 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    9561 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9562 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    9563 shown at level 0.0112, step 1, values float32 
    9564 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    9565 2.14, shown at level 0.00974, step 1, values float32 
    9566 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    9567 level 0.157, step 1, values float32 
    9568 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    9569 0.0283, step 1, values float32 
    9570 Opened 1unit_PflABCD.mrc as #5, grid size 200,200,200, pixel 2.14, shown at
    9571 level 0.00404, step 1, values float32 
    9572 Log from Wed Sep 10 10:46:36 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    9573 © 2016-2024 Regents of the University of California. All rights reserved. 
    9574 
    9575 > open /Users/shoichi/Desktop/For_Composition-
    9576 > maps/Building_Whole_Model_09102025.cxs
    9577 
    9578 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    9579 level 0.0137, step 1, values float32 
    9580 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    9581 step 1, values float32 
    9582 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    9583 level 0.0137, step 1, values float32 
    9584 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    9585 level 0.0137, step 1, values float32 
    9586 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    9587 level 0.027, step 1, values float32 
    9588 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    9589 step 1, values float32 
    9590 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    9591 level 0.0166, step 1, values float32 
    9592 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    9593 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9594 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    9595 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9596 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    9597 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9598 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    9599 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9600 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    9601 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9602 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    9603 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9604 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    9605 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9606 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    9607 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9608 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    9609 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9610 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    9611 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9612 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    9613 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9614 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    9615 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9616 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    9617 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9618 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    9619 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9620 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    9621 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9622 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    9623 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9624 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    9625 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9626 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    9627 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9628 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    9629 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9630 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    9631 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9632 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    9633 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9634 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    9635 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9636 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    9637 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9638 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    9639 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9640 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    9641 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9642 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    9643 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9644 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    9645 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9646 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    9647 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9648 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    9649 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9650 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    9651 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9652 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    9653 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9654 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    9655 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9656 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    9657 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9658 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    9659 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9660 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    9661 shown at level 0.000785, step 1, values float32 
    9662 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    9663 shown at level 0.000785, step 1, values float32 
    9664 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    9665 shown at level 0.000785, step 1, values float32 
    9666 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    9667 shown at level 0.000785, step 1, values float32 
    9668 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    9669 shown at level 0.000785, step 1, values float32 
    9670 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    9671 shown at level 0.000785, step 1, values float32 
    9672 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    9673 shown at level 0.000785, step 1, values float32 
    9674 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    9675 shown at level 0.000785, step 1, values float32 
    9676 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    9677 shown at level 0.000785, step 1, values float32 
    9678 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    9679 shown at level 0.000785, step 1, values float32 
    9680 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    9681 shown at level 0.000785, step 1, values float32 
    9682 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    9683 shown at level 0.000785, step 1, values float32 
    9684 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    9685 shown at level 0.000785, step 1, values float32 
    9686 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    9687 shown at level 0.000785, step 1, values float32 
    9688 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    9689 shown at level 0.000785, step 1, values float32 
    9690 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    9691 shown at level 0.000785, step 1, values float32 
    9692 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    9693 shown at level 0.000785, step 1, values float32 
    9694 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    9695 shown at level 0.00107, step 1, values float32 
    9696 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    9697 shown at level 0.00107, step 1, values float32 
    9698 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    9699 shown at level 0.00107, step 1, values float32 
    9700 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    9701 shown at level 0.00107, step 1, values float32 
    9702 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    9703 shown at level 0.00107, step 1, values float32 
    9704 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    9705 shown at level 0.00107, step 1, values float32 
    9706 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    9707 shown at level 0.00107, step 1, values float32 
    9708 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    9709 shown at level 0.00107, step 1, values float32 
    9710 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    9711 shown at level 0.00107, step 1, values float32 
    9712 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    9713 shown at level 0.00107, step 1, values float32 
    9714 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    9715 shown at level 0.00107, step 1, values float32 
    9716 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    9717 shown at level 0.00107, step 1, values float32 
    9718 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    9719 shown at level 0.00107, step 1, values float32 
    9720 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    9721 shown at level 0.00107, step 1, values float32 
    9722 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    9723 shown at level 0.00107, step 1, values float32 
    9724 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    9725 shown at level 0.00107, step 1, values float32 
    9726 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    9727 shown at level 0.00107, step 1, values float32 
    9728 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    9729 shown at level 0.000848, step 1, values float32 
    9730 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    9731 shown at level 0.000848, step 1, values float32 
    9732 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    9733 shown at level 0.000848, step 1, values float32 
    9734 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    9735 shown at level 0.000848, step 1, values float32 
    9736 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    9737 shown at level 0.000848, step 1, values float32 
    9738 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    9739 shown at level 0.000848, step 1, values float32 
    9740 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    9741 shown at level 0.000848, step 1, values float32 
    9742 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    9743 shown at level 0.000848, step 1, values float32 
    9744 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    9745 shown at level 0.000848, step 1, values float32 
    9746 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    9747 shown at level 0.000848, step 1, values float32 
    9748 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    9749 shown at level 0.000848, step 1, values float32 
    9750 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    9751 shown at level 0.000848, step 1, values float32 
    9752 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    9753 shown at level 0.000848, step 1, values float32 
    9754 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    9755 shown at level 0.000848, step 1, values float32 
    9756 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    9757 shown at level 0.000848, step 1, values float32 
    9758 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    9759 shown at level 0.000848, step 1, values float32 
    9760 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    9761 shown at level 0.000848, step 1, values float32 
    9762 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    9763 2.14, shown at level 0.000997, step 1, values float32 
    9764 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    9765 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9766 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    9767 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9768 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    9769 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9770 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    9771 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9772 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    9773 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9774 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    9775 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9776 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    9777 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9778 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    9779 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9780 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    9781 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9782 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    9783 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9784 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    9785 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9786 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    9787 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9788 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    9789 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9790 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    9791 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9792 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    9793 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9794 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    9795 pixel 2.14, shown at level 0.000997, step 1, values float32 
    9796 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    9797 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9798 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    9799 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9800 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    9801 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9802 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    9803 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9804 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    9805 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9806 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    9807 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9808 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    9809 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9810 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    9811 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9812 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    9813 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9814 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    9815 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9816 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    9817 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9818 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    9819 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9820 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    9821 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9822 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    9823 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9824 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    9825 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9826 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    9827 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9828 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    9829 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    9830 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    9831 shown at level 0.0112, step 1, values float32 
    9832 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    9833 2.14, shown at level 0.00974, step 1, values float32 
    9834 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    9835 level 0.157, step 1, values float32 
    9836 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    9837 0.0283, step 1, values float32 
    9838 Opened 1unit_PflABCD.mrc as #5, grid size 200,200,200, pixel 2.14, shown at
    9839 level 0.00404, step 1, values float32 
    9840 Log from Wed Sep 10 10:14:24 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    9841 © 2016-2024 Regents of the University of California. All rights reserved. 
    9842 
    9843 > open /Users/shoichi/Desktop/For_Composition-
    9844 > maps/Building_Whole_Model_09102025.cxs
    9845 
    9846 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    9847 level 0.0137, step 1, values float32 
    9848 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    9849 step 1, values float32 
    9850 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    9851 level 0.0137, step 1, values float32 
    9852 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    9853 level 0.0137, step 1, values float32 
    9854 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    9855 level 0.027, step 1, values float32 
    9856 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    9857 step 1, values float32 
    9858 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    9859 level 0.0166, step 1, values float32 
    9860 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    9861 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9862 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    9863 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9864 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    9865 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9866 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    9867 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9868 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    9869 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9870 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    9871 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9872 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    9873 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9874 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    9875 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9876 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    9877 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9878 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    9879 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9880 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    9881 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9882 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    9883 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9884 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    9885 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9886 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    9887 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9888 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    9889 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9890 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    9891 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9892 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    9893 pixel 2.14, shown at level 0.000576, step 1, values float32 
    9894 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    9895 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9896 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    9897 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9898 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    9899 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9900 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    9901 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9902 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    9903 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9904 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    9905 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9906 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    9907 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9908 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    9909 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9910 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    9911 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9912 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    9913 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9914 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    9915 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9916 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    9917 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9918 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    9919 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9920 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    9921 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9922 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    9923 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9924 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    9925 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9926 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    9927 pixel 2.14, shown at level 0.000793, step 1, values float32 
    9928 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    9929 shown at level 0.000785, step 1, values float32 
    9930 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    9931 shown at level 0.000785, step 1, values float32 
    9932 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    9933 shown at level 0.000785, step 1, values float32 
    9934 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    9935 shown at level 0.000785, step 1, values float32 
    9936 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    9937 shown at level 0.000785, step 1, values float32 
    9938 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    9939 shown at level 0.000785, step 1, values float32 
    9940 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    9941 shown at level 0.000785, step 1, values float32 
    9942 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    9943 shown at level 0.000785, step 1, values float32 
    9944 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    9945 shown at level 0.000785, step 1, values float32 
    9946 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    9947 shown at level 0.000785, step 1, values float32 
    9948 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    9949 shown at level 0.000785, step 1, values float32 
    9950 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    9951 shown at level 0.000785, step 1, values float32 
    9952 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    9953 shown at level 0.000785, step 1, values float32 
    9954 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    9955 shown at level 0.000785, step 1, values float32 
    9956 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    9957 shown at level 0.000785, step 1, values float32 
    9958 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    9959 shown at level 0.000785, step 1, values float32 
    9960 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    9961 shown at level 0.000785, step 1, values float32 
    9962 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    9963 shown at level 0.00107, step 1, values float32 
    9964 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    9965 shown at level 0.00107, step 1, values float32 
    9966 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    9967 shown at level 0.00107, step 1, values float32 
    9968 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    9969 shown at level 0.00107, step 1, values float32 
    9970 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    9971 shown at level 0.00107, step 1, values float32 
    9972 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    9973 shown at level 0.00107, step 1, values float32 
    9974 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    9975 shown at level 0.00107, step 1, values float32 
    9976 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    9977 shown at level 0.00107, step 1, values float32 
    9978 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    9979 shown at level 0.00107, step 1, values float32 
    9980 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    9981 shown at level 0.00107, step 1, values float32 
    9982 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    9983 shown at level 0.00107, step 1, values float32 
    9984 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    9985 shown at level 0.00107, step 1, values float32 
    9986 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    9987 shown at level 0.00107, step 1, values float32 
    9988 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    9989 shown at level 0.00107, step 1, values float32 
    9990 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    9991 shown at level 0.00107, step 1, values float32 
    9992 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    9993 shown at level 0.00107, step 1, values float32 
    9994 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    9995 shown at level 0.00107, step 1, values float32 
    9996 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    9997 shown at level 0.000848, step 1, values float32 
    9998 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    9999 shown at level 0.000848, step 1, values float32 
    10000 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    10001 shown at level 0.000848, step 1, values float32 
    10002 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    10003 shown at level 0.000848, step 1, values float32 
    10004 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    10005 shown at level 0.000848, step 1, values float32 
    10006 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    10007 shown at level 0.000848, step 1, values float32 
    10008 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    10009 shown at level 0.000848, step 1, values float32 
    10010 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    10011 shown at level 0.000848, step 1, values float32 
    10012 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    10013 shown at level 0.000848, step 1, values float32 
    10014 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    10015 shown at level 0.000848, step 1, values float32 
    10016 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    10017 shown at level 0.000848, step 1, values float32 
    10018 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    10019 shown at level 0.000848, step 1, values float32 
    10020 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    10021 shown at level 0.000848, step 1, values float32 
    10022 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    10023 shown at level 0.000848, step 1, values float32 
    10024 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    10025 shown at level 0.000848, step 1, values float32 
    10026 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    10027 shown at level 0.000848, step 1, values float32 
    10028 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    10029 shown at level 0.000848, step 1, values float32 
    10030 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    10031 2.14, shown at level 0.000997, step 1, values float32 
    10032 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    10033 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10034 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    10035 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10036 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    10037 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10038 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    10039 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10040 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    10041 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10042 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    10043 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10044 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    10045 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10046 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    10047 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10048 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    10049 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10050 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    10051 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10052 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    10053 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10054 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    10055 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10056 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    10057 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10058 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    10059 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10060 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    10061 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10062 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    10063 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10064 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    10065 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10066 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    10067 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10068 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    10069 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10070 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    10071 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10072 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    10073 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10074 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    10075 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10076 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    10077 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10078 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    10079 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10080 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    10081 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10082 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    10083 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10084 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    10085 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10086 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    10087 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10088 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    10089 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10090 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    10091 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10092 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    10093 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10094 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    10095 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10096 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    10097 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10098 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    10099 shown at level 0.0112, step 1, values float32 
    10100 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    10101 2.14, shown at level 0.00974, step 1, values float32 
    10102 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    10103 level 0.157, step 1, values float32 
    10104 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    10105 0.0283, step 1, values float32 
    10106 Opened 1unit_PflABCD.mrc as #5, grid size 200,200,200, pixel 2.14, shown at
    10107 level 0.00404, step 1, values float32 
    10108 Log from Wed Sep 10 09:47:44 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    10109 © 2016-2024 Regents of the University of California. All rights reserved. 
    10110 
    10111 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    10112 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    10113 > review/Updated_Figures/09092025/For_Composition-
    10114 > maps/Cleanup3_Building_Composition.cxs"
    10115 
    10116 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    10117 level 0.0137, step 1, values float32 
    10118 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    10119 step 1, values float32 
    10120 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    10121 level 0.0137, step 1, values float32 
    10122 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    10123 level 0.0137, step 1, values float32 
    10124 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    10125 level 0.027, step 1, values float32 
    10126 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    10127 step 1, values float32 
    10128 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    10129 level 0.0166, step 1, values float32 
    10130 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    10131 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10132 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    10133 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10134 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    10135 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10136 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    10137 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10138 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    10139 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10140 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    10141 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10142 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    10143 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10144 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    10145 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10146 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    10147 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10148 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    10149 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10150 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    10151 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10152 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    10153 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10154 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    10155 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10156 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    10157 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10158 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    10159 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10160 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    10161 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10162 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    10163 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10164 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    10165 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10166 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    10167 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10168 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    10169 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10170 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    10171 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10172 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    10173 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10174 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    10175 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10176 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    10177 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10178 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    10179 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10180 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    10181 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10182 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    10183 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10184 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    10185 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10186 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    10187 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10188 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    10189 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10190 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    10191 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10192 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    10193 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10194 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    10195 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10196 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    10197 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10198 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    10199 shown at level 0.000785, step 1, values float32 
    10200 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    10201 shown at level 0.000785, step 1, values float32 
    10202 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    10203 shown at level 0.000785, step 1, values float32 
    10204 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    10205 shown at level 0.000785, step 1, values float32 
    10206 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    10207 shown at level 0.000785, step 1, values float32 
    10208 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    10209 shown at level 0.000785, step 1, values float32 
    10210 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    10211 shown at level 0.000785, step 1, values float32 
    10212 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    10213 shown at level 0.000785, step 1, values float32 
    10214 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    10215 shown at level 0.000785, step 1, values float32 
    10216 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    10217 shown at level 0.000785, step 1, values float32 
    10218 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    10219 shown at level 0.000785, step 1, values float32 
    10220 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    10221 shown at level 0.000785, step 1, values float32 
    10222 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    10223 shown at level 0.000785, step 1, values float32 
    10224 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    10225 shown at level 0.000785, step 1, values float32 
    10226 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    10227 shown at level 0.000785, step 1, values float32 
    10228 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    10229 shown at level 0.000785, step 1, values float32 
    10230 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    10231 shown at level 0.000785, step 1, values float32 
    10232 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    10233 shown at level 0.00107, step 1, values float32 
    10234 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    10235 shown at level 0.00107, step 1, values float32 
    10236 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    10237 shown at level 0.00107, step 1, values float32 
    10238 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    10239 shown at level 0.00107, step 1, values float32 
    10240 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    10241 shown at level 0.00107, step 1, values float32 
    10242 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    10243 shown at level 0.00107, step 1, values float32 
    10244 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    10245 shown at level 0.00107, step 1, values float32 
    10246 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    10247 shown at level 0.00107, step 1, values float32 
    10248 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    10249 shown at level 0.00107, step 1, values float32 
    10250 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    10251 shown at level 0.00107, step 1, values float32 
    10252 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    10253 shown at level 0.00107, step 1, values float32 
    10254 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    10255 shown at level 0.00107, step 1, values float32 
    10256 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    10257 shown at level 0.00107, step 1, values float32 
    10258 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    10259 shown at level 0.00107, step 1, values float32 
    10260 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    10261 shown at level 0.00107, step 1, values float32 
    10262 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    10263 shown at level 0.00107, step 1, values float32 
    10264 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    10265 shown at level 0.00107, step 1, values float32 
    10266 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    10267 shown at level 0.000848, step 1, values float32 
    10268 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    10269 shown at level 0.000848, step 1, values float32 
    10270 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    10271 shown at level 0.000848, step 1, values float32 
    10272 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    10273 shown at level 0.000848, step 1, values float32 
    10274 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    10275 shown at level 0.000848, step 1, values float32 
    10276 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    10277 shown at level 0.000848, step 1, values float32 
    10278 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    10279 shown at level 0.000848, step 1, values float32 
    10280 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    10281 shown at level 0.000848, step 1, values float32 
    10282 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    10283 shown at level 0.000848, step 1, values float32 
    10284 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    10285 shown at level 0.000848, step 1, values float32 
    10286 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    10287 shown at level 0.000848, step 1, values float32 
    10288 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    10289 shown at level 0.000848, step 1, values float32 
    10290 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    10291 shown at level 0.000848, step 1, values float32 
    10292 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    10293 shown at level 0.000848, step 1, values float32 
    10294 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    10295 shown at level 0.000848, step 1, values float32 
    10296 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    10297 shown at level 0.000848, step 1, values float32 
    10298 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    10299 shown at level 0.000848, step 1, values float32 
    10300 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    10301 2.14, shown at level 0.000997, step 1, values float32 
    10302 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    10303 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10304 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    10305 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10306 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    10307 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10308 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    10309 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10310 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    10311 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10312 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    10313 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10314 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    10315 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10316 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    10317 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10318 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    10319 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10320 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    10321 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10322 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    10323 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10324 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    10325 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10326 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    10327 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10328 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    10329 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10330 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    10331 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10332 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    10333 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10334 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    10335 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10336 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    10337 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10338 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    10339 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10340 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    10341 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10342 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    10343 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10344 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    10345 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10346 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    10347 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10348 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    10349 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10350 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    10351 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10352 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    10353 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10354 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    10355 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10356 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    10357 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10358 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    10359 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10360 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    10361 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10362 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    10363 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10364 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    10365 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10366 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    10367 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10368 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    10369 shown at level 0.0112, step 1, values float32 
    10370 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    10371 2.14, shown at level 0.00974, step 1, values float32 
    10372 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    10373 level 0.157, step 1, values float32 
    10374 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    10375 0.0283, step 1, values float32 
    10376 Log from Tue Sep 9 15:35:44 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    10377 © 2016-2024 Regents of the University of California. All rights reserved. 
    10378 
    10379 > open /Users/shoichi/Desktop/For_Composition-
    10380 > maps/Cleanup_Building_Composition.cxs
    10381 
    10382 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    10383 level 0.0137, step 1, values float32 
    10384 Opened 1unit_rim.mrc as #2, grid size 250,250,250, pixel 4.3, shown at level
    10385 0.0137, step 1, values float32 
    10386 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    10387 step 1, values float32 
    10388 Opened C-ring-stators.mrc as #77, grid size 250,250,250, pixel 4.3, shown at
    10389 level 0.0137, step 1, values float32 
    10390 Opened C-Vring.mrc as #80, grid size 250,250,250, pixel 4.3, shown at level
    10391 0.0137, step 1, values float32 
    10392 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    10393 level 0.0137, step 1, values float32 
    10394 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    10395 level 0.0137, step 1, values float32 
    10396 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    10397 level 0.027, step 1, values float32 
    10398 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    10399 step 1, values float32 
    10400 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    10401 level 0.0166, step 1, values float32 
    10402 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    10403 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10404 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    10405 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10406 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    10407 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10408 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    10409 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10410 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    10411 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10412 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    10413 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10414 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    10415 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10416 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    10417 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10418 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    10419 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10420 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    10421 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10422 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    10423 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10424 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    10425 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10426 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    10427 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10428 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    10429 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10430 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    10431 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10432 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    10433 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10434 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    10435 pixel 2.14, shown at level 0.000576, step 1, values float32 
    10436 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    10437 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10438 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    10439 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10440 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    10441 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10442 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    10443 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10444 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    10445 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10446 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    10447 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10448 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    10449 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10450 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    10451 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10452 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    10453 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10454 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    10455 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10456 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    10457 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10458 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    10459 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10460 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    10461 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10462 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    10463 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10464 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    10465 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10466 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    10467 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10468 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    10469 pixel 2.14, shown at level 0.000793, step 1, values float32 
    10470 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    10471 shown at level 0.000785, step 1, values float32 
    10472 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    10473 shown at level 0.000785, step 1, values float32 
    10474 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    10475 shown at level 0.000785, step 1, values float32 
    10476 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    10477 shown at level 0.000785, step 1, values float32 
    10478 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    10479 shown at level 0.000785, step 1, values float32 
    10480 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    10481 shown at level 0.000785, step 1, values float32 
    10482 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    10483 shown at level 0.000785, step 1, values float32 
    10484 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    10485 shown at level 0.000785, step 1, values float32 
    10486 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    10487 shown at level 0.000785, step 1, values float32 
    10488 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    10489 shown at level 0.000785, step 1, values float32 
    10490 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    10491 shown at level 0.000785, step 1, values float32 
    10492 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    10493 shown at level 0.000785, step 1, values float32 
    10494 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    10495 shown at level 0.000785, step 1, values float32 
    10496 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    10497 shown at level 0.000785, step 1, values float32 
    10498 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    10499 shown at level 0.000785, step 1, values float32 
    10500 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    10501 shown at level 0.000785, step 1, values float32 
    10502 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    10503 shown at level 0.000785, step 1, values float32 
    10504 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    10505 shown at level 0.00107, step 1, values float32 
    10506 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    10507 shown at level 0.00107, step 1, values float32 
    10508 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    10509 shown at level 0.00107, step 1, values float32 
    10510 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    10511 shown at level 0.00107, step 1, values float32 
    10512 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    10513 shown at level 0.00107, step 1, values float32 
    10514 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    10515 shown at level 0.00107, step 1, values float32 
    10516 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    10517 shown at level 0.00107, step 1, values float32 
    10518 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    10519 shown at level 0.00107, step 1, values float32 
    10520 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    10521 shown at level 0.00107, step 1, values float32 
    10522 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    10523 shown at level 0.00107, step 1, values float32 
    10524 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    10525 shown at level 0.00107, step 1, values float32 
    10526 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    10527 shown at level 0.00107, step 1, values float32 
    10528 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    10529 shown at level 0.00107, step 1, values float32 
    10530 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    10531 shown at level 0.00107, step 1, values float32 
    10532 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    10533 shown at level 0.00107, step 1, values float32 
    10534 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    10535 shown at level 0.00107, step 1, values float32 
    10536 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    10537 shown at level 0.00107, step 1, values float32 
    10538 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    10539 shown at level 0.000848, step 1, values float32 
    10540 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    10541 shown at level 0.000848, step 1, values float32 
    10542 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    10543 shown at level 0.000848, step 1, values float32 
    10544 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    10545 shown at level 0.000848, step 1, values float32 
    10546 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    10547 shown at level 0.000848, step 1, values float32 
    10548 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    10549 shown at level 0.000848, step 1, values float32 
    10550 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    10551 shown at level 0.000848, step 1, values float32 
    10552 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    10553 shown at level 0.000848, step 1, values float32 
    10554 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    10555 shown at level 0.000848, step 1, values float32 
    10556 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    10557 shown at level 0.000848, step 1, values float32 
    10558 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    10559 shown at level 0.000848, step 1, values float32 
    10560 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    10561 shown at level 0.000848, step 1, values float32 
    10562 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    10563 shown at level 0.000848, step 1, values float32 
    10564 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    10565 shown at level 0.000848, step 1, values float32 
    10566 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    10567 shown at level 0.000848, step 1, values float32 
    10568 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    10569 shown at level 0.000848, step 1, values float32 
    10570 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    10571 shown at level 0.000848, step 1, values float32 
    10572 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    10573 2.14, shown at level 0.000997, step 1, values float32 
    10574 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    10575 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10576 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    10577 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10578 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    10579 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10580 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    10581 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10582 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    10583 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10584 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    10585 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10586 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    10587 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10588 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    10589 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10590 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    10591 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10592 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    10593 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10594 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    10595 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10596 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    10597 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10598 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    10599 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10600 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    10601 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10602 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    10603 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10604 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    10605 pixel 2.14, shown at level 0.000997, step 1, values float32 
    10606 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    10607 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10608 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    10609 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10610 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    10611 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10612 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    10613 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10614 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    10615 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10616 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    10617 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10618 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    10619 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10620 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    10621 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10622 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    10623 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10624 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    10625 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10626 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    10627 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10628 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    10629 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10630 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    10631 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10632 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    10633 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10634 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    10635 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10636 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    10637 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10638 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    10639 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    10640 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    10641 shown at level 0.0112, step 1, values float32 
    10642 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    10643 2.14, shown at level 0.00974, step 1, values float32 
    10644 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    10645 level 0.157, step 1, values float32 
    10646 Log from Tue Sep 9 13:34:58 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    10647 © 2016-2024 Regents of the University of California. All rights reserved. 
    10648 
    10649 > open /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    10650 
    10651 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    10652 level 0.0137, step 1, values float32 
    10653 Opened 1unit_rim.mrc as #2, grid size 250,250,250, pixel 4.3, shown at level
    10654 0.0137, step 1, values float32 
    10655 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    10656 step 1, values float32 
    10657 Opened 1unit_rim.mrc gaussian copy as #5, grid size 250,250,250, pixel 4.3,
    10658 shown at level 0.0137, step 1, values float32 
    10659 Opened 1unit_rim.mrc gaussian copy as #6, grid size 250,250,250, pixel 4.3,
    10660 shown at level 0.0137, step 1, values float32 
    10661 Opened 1unit_rim.mrc gaussian copy as #7, grid size 250,250,250, pixel 4.3,
    10662 shown at level 0.0137, step 1, values float32 
    10663 Opened 1unit_rim.mrc gaussian copy as #8, grid size 250,250,250, pixel 4.3,
    10664 shown at level 0.0137, step 1, values float32 
    10665 Opened 1unit_rim.mrc gaussian copy as #9, grid size 250,250,250, pixel 4.3,
    10666 shown at level 0.0137, step 1, values float32 
    10667 Opened 1unit_rim.mrc gaussian copy as #10, grid size 250,250,250, pixel 4.3,
    10668 shown at level 0.0137, step 1, values float32 
    10669 Opened 1unit_rim.mrc gaussian copy as #11, grid size 250,250,250, pixel 4.3,
    10670 shown at level 0.0137, step 1, values float32 
    10671 Opened 1unit_rim.mrc gaussian copy as #12, grid size 250,250,250, pixel 4.3,
    10672 shown at level 0.0137, step 1, values float32 
    10673 Opened 1unit_rim.mrc gaussian copy as #13, grid size 250,250,250, pixel 4.3,
    10674 shown at level 0.0137, step 1, values float32 
    10675 Opened 1unit_rim.mrc gaussian copy as #14, grid size 250,250,250, pixel 4.3,
    10676 shown at level 0.0137, step 1, values float32 
    10677 Opened 1unit_rim.mrc gaussian copy as #15, grid size 250,250,250, pixel 4.3,
    10678 shown at level 0.0137, step 1, values float32 
    10679 Opened 1unit_rim.mrc gaussian copy as #16, grid size 250,250,250, pixel 4.3,
    10680 shown at level 0.0137, step 1, values float32 
    10681 Opened 1unit_rim.mrc gaussian copy as #17, grid size 250,250,250, pixel 4.3,
    10682 shown at level 0.0137, step 1, values float32 
    10683 Opened 1unit_rim.mrc gaussian copy as #18, grid size 250,250,250, pixel 4.3,
    10684 shown at level 0.0137, step 1, values float32 
    10685 Opened 1unit_rim.mrc gaussian copy as #19, grid size 250,250,250, pixel 4.3,
    10686 shown at level 0.0137, step 1, values float32 
    10687 Opened 1unit_rim.mrc gaussian copy as #20, grid size 250,250,250, pixel 4.3,
    10688 shown at level 0.0137, step 1, values float32 
    10689 Opened 1unit_PflA.mrc as #21, grid size 250,250,250, pixel 4.3, shown at level
    10690 0.0137, step 1, values float32 
    10691 Opened 1unit_PflA.mrc copy as #22, grid size 250,250,250, pixel 4.3, shown at
    10692 level 0.0137, step 1, values float32 
    10693 Opened 1unit_PflA.mrc copy as #23, grid size 250,250,250, pixel 4.3, shown at
    10694 level 0.0137, step 1, values float32 
    10695 Opened 1unit_PflA.mrc copy as #24, grid size 250,250,250, pixel 4.3, shown at
    10696 level 0.0137, step 1, values float32 
    10697 Opened 1unit_PflA.mrc copy as #25, grid size 250,250,250, pixel 4.3, shown at
    10698 level 0.0137, step 1, values float32 
    10699 Opened 1unit_PflA.mrc copy as #26, grid size 250,250,250, pixel 4.3, shown at
    10700 level 0.0137, step 1, values float32 
    10701 Opened 1unit_PflA.mrc copy as #27, grid size 250,250,250, pixel 4.3, shown at
    10702 level 0.0137, step 1, values float32 
    10703 Opened 1unit_PflA.mrc copy as #28, grid size 250,250,250, pixel 4.3, shown at
    10704 level 0.0137, step 1, values float32 
    10705 Opened 1unit_PflA.mrc copy as #29, grid size 250,250,250, pixel 4.3, shown at
    10706 level 0.0137, step 1, values float32 
    10707 Opened 1unit_PflA.mrc copy as #30, grid size 250,250,250, pixel 4.3, shown at
    10708 level 0.0137, step 1, values float32 
    10709 Opened 1unit_PflA.mrc copy as #31, grid size 250,250,250, pixel 4.3, shown at
    10710 level 0.0137, step 1, values float32 
    10711 Opened 1unit_PflA.mrc copy as #32, grid size 250,250,250, pixel 4.3, shown at
    10712 level 0.0137, step 1, values float32 
    10713 Opened 1unit_PflA.mrc copy as #33, grid size 250,250,250, pixel 4.3, shown at
    10714 level 0.0137, step 1, values float32 
    10715 Opened 1unit_PflA.mrc copy as #34, grid size 250,250,250, pixel 4.3, shown at
    10716 level 0.0137, step 1, values float32 
    10717 Opened 1unit_PflA.mrc copy as #35, grid size 250,250,250, pixel 4.3, shown at
    10718 level 0.0137, step 1, values float32 
    10719 Opened 1unit_PflA.mrc copy as #36, grid size 250,250,250, pixel 4.3, shown at
    10720 level 0.0137, step 1, values float32 
    10721 Opened 1unit_PflA.mrc copy as #37, grid size 250,250,250, pixel 4.3, shown at
    10722 level 0.0137, step 1, values float32 
    10723 Opened 1unit_PflA.mrc copy as #38, grid size 250,250,250, pixel 4.3, shown at
    10724 level 0.0137, step 1, values float32 
    10725 Opened FliL_out.mrc copy as #41, grid size 250,250,250, pixel 4.3, shown at
    10726 level 0.0137, step 1, values float32 
    10727 Opened FliL_out.mrc copy as #39, grid size 250,250,250, pixel 4.3, shown at
    10728 level 0.0137, step 1, values float32 
    10729 Opened FliL_out.mrc copy as #40, grid size 250,250,250, pixel 4.3, shown at
    10730 level 0.0137, step 1, values float32 
    10731 Opened FliL_out.mrc copy as #42, grid size 250,250,250, pixel 4.3, shown at
    10732 level 0.0137, step 1, values float32 
    10733 Opened FliL_out.mrc copy as #43, grid size 250,250,250, pixel 4.3, shown at
    10734 level 0.0137, step 1, values float32 
    10735 Opened FliL_out.mrc copy as #44, grid size 250,250,250, pixel 4.3, shown at
    10736 level 0.0137, step 1, values float32 
    10737 Opened FliL_out.mrc copy as #45, grid size 250,250,250, pixel 4.3, shown at
    10738 level 0.0137, step 1, values float32 
    10739 Opened FliL_out.mrc copy as #46, grid size 250,250,250, pixel 4.3, shown at
    10740 level 0.0137, step 1, values float32 
    10741 Opened FliL_out.mrc copy as #47, grid size 250,250,250, pixel 4.3, shown at
    10742 level 0.0137, step 1, values float32 
    10743 Opened FliL_out.mrc copy as #48, grid size 250,250,250, pixel 4.3, shown at
    10744 level 0.0137, step 1, values float32 
    10745 Opened FliL_out.mrc copy as #49, grid size 250,250,250, pixel 4.3, shown at
    10746 level 0.0137, step 1, values float32 
    10747 Opened FliL_out.mrc copy as #50, grid size 250,250,250, pixel 4.3, shown at
    10748 level 0.0137, step 1, values float32 
    10749 Opened FliL_out.mrc copy as #51, grid size 250,250,250, pixel 4.3, shown at
    10750 level 0.0137, step 1, values float32 
    10751 Opened FliL_out.mrc copy as #52, grid size 250,250,250, pixel 4.3, shown at
    10752 level 0.0137, step 1, values float32 
    10753 Opened FliL_out.mrc copy as #53, grid size 250,250,250, pixel 4.3, shown at
    10754 level 0.0137, step 1, values float32 
    10755 Opened FliL_out.mrc copy as #54, grid size 250,250,250, pixel 4.3, shown at
    10756 level 0.0137, step 1, values float32 
    10757 Opened FliL_out.mrc copy as #55, grid size 250,250,250, pixel 4.3, shown at
    10758 level 0.0137, step 1, values float32 
    10759 Opened FliL_out.mrc copy as #56, grid size 250,250,250, pixel 4.3, shown at
    10760 level 0.0137, step 1, values float32 
    10761 Opened FliL.mrc as #57, grid size 250,250,250, pixel 4.3, shown at level
    10762 0.0137, step 1, values float32 
    10763 Opened Cage-Mono-Good.mrc as #58, grid size 250,250,250, pixel 4.3, shown at
    10764 level 0.0137, step 1, values float32 
    10765 Opened Cage-Mono-Good.mrc copy as #59, grid size 250,250,250, pixel 4.3, shown
    10766 at level 0.0137, step 1, values float32 
    10767 Opened Cage-Mono-Good.mrc copy as #60, grid size 250,250,250, pixel 4.3, shown
    10768 at level 0.0137, step 1, values float32 
    10769 Opened Cage-Mono-Good.mrc copy as #61, grid size 250,250,250, pixel 4.3, shown
    10770 at level 0.0137, step 1, values float32 
    10771 Opened Cage-Mono-Good.mrc copy as #62, grid size 250,250,250, pixel 4.3, shown
    10772 at level 0.0137, step 1, values float32 
    10773 Opened Cage-Mono-Good.mrc copy as #63, grid size 250,250,250, pixel 4.3, shown
    10774 at level 0.0137, step 1, values float32 
    10775 Opened Cage-Mono-Good.mrc copy as #64, grid size 250,250,250, pixel 4.3, shown
    10776 at level 0.0137, step 1, values float32 
    10777 Opened Cage-Mono-Good.mrc copy as #65, grid size 250,250,250, pixel 4.3, shown
    10778 at level 0.0137, step 1, values float32 
    10779 Opened Cage-Mono-Good.mrc copy as #66, grid size 250,250,250, pixel 4.3, shown
    10780 at level 0.0137, step 1, values float32 
    10781 Opened Cage-Mono-Good.mrc copy as #67, grid size 250,250,250, pixel 4.3, shown
    10782 at level 0.0137, step 1, values float32 
    10783 Opened Cage-Mono-Good.mrc copy as #68, grid size 250,250,250, pixel 4.3, shown
    10784 at level 0.0137, step 1, values float32 
    10785 Opened Cage-Mono-Good.mrc copy as #69, grid size 250,250,250, pixel 4.3, shown
    10786 at level 0.0137, step 1, values float32 
    10787 Opened Cage-Mono-Good.mrc copy as #70, grid size 250,250,250, pixel 4.3, shown
    10788 at level 0.0137, step 1, values float32 
    10789 Opened Cage-Mono-Good.mrc copy as #71, grid size 250,250,250, pixel 4.3, shown
    10790 at level 0.0137, step 1, values float32 
    10791 Opened Cage-Mono-Good.mrc copy as #72, grid size 250,250,250, pixel 4.3, shown
    10792 at level 0.0137, step 1, values float32 
    10793 Opened Cage-Mono-Good.mrc copy as #73, grid size 250,250,250, pixel 4.3, shown
    10794 at level 0.0137, step 1, values float32 
    10795 Opened Cage-Mono-Good.mrc copy as #74, grid size 250,250,250, pixel 4.3, shown
    10796 at level 0.0137, step 1, values float32 
    10797 Opened Cage-Mono-Good.mrc copy as #75, grid size 250,250,250, pixel 4.3, shown
    10798 at level 0.0137, step 1, values float32 
    10799 Opened MS-ring.mrc as #76, grid size 250,250,250, pixel 4.3, shown at level
    10800 0.0137, step 1, values float32 
    10801 Opened E-ring.mrc gaussian as #78, grid size 250,250,250, pixel 4.3, shown at
    10802 level 0.114, step 1, values float32 
    10803 Opened 1unit_rim.mrc gaussian as #4, grid size 250,250,250, pixel 4.3, shown
    10804 at level 0.0137, step 1, values float32 
    10805 Opened Basal_disk.mrc gaussian as #79, grid size 250,250,250, pixel 4.3, shown
    10806 at level 0.0595, step 1, values float32 
    10807 Opened C-ring-stators.mrc as #77, grid size 250,250,250, pixel 4.3, shown at
    10808 level 0.0137, step 1, values float32 
    10809 Opened C-Vring.mrc as #80, grid size 250,250,250, pixel 4.3, shown at level
    10810 0.0137, step 1, values float32 
    10811 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    10812 level 0.0137, step 1, values float32 
    10813 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    10814 level 0.0137, step 1, values float32 
    10815 Opened MotB.mrc as #81, grid size 250,250,250, pixel 4.3, shown at level
    10816 0.0137, step 1, values float32 
    10817 Opened PflC.mrc gaussian as #85, grid size 250,250,250, pixel 4.3, shown at
    10818 level 0.0439, step 1, values float32 
    10819 Opened PflD.mrc as #86, grid size 250,250,250, pixel 4.3, shown at level
    10820 0.0137, step 1, values float32 
    10821 Opened PilM.mrc gaussian as #84, grid size 250,250,250, pixel 4.3, shown at
    10822 level 0.0137, step 1, values float32 
    10823 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    10824 level 0.027, step 1, values float32 
    10825 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    10826 step 1, values float32 
    10827 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    10828 level 0.0166, step 1, values float32 
    10829 Opened C17-FlgY_New.mrc as #90, grid size 256,256,256, pixel 2.14, shown at
    10830 level 0.0212, step 1, values float32 
    10831 Opened MS-ring_New.mrc as #91, grid size 256,256,256, pixel 2.14, shown at
    10832 level 0.0165, step 1, values float32 
    10833 Opened Single_Cage_unit.mrc as #92, grid size 200,200,200, pixel 2.14, shown
    10834 at level 0.00159, step 1, values float32 
    10835 Opened 1unit_PflABCD.mrc as #94, grid size 200,200,200, pixel 2.14, shown at
    10836 level 0.0064, step 1, values float32 
    10837 Opened 1xMotBpg-09092025.mrc as #93, grid size 200,200,200, pixel 2.14, shown
    10838 at level 0.00231, step 1, values float32 
    10839 Opened 1xPflD.mrc as #95, grid size 200,200,200, pixel 2.14, shown at level
    10840 0.00228, step 1, values float32 
    10841 Opened 1xPflC.mrc as #96, grid size 200,200,200, pixel 2.14, shown at level
    10842 0.00265, step 1, values float32 
    10843 Opened Single-MotA-ring.mrc as #97, grid size 200,200,200, pixel 2.14, shown
    10844 at level 0.00252, step 1, values float32 
    10845 Opened 1xPflAB_region.mrc as #98, grid size 200,200,200, pixel 2.14, shown at
    10846 level 0.00102, step 1, values float32 
    10847 Log from Tue Sep 9 11:45:50 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    10848 © 2016-2024 Regents of the University of California. All rights reserved. 
    10849 
    10850 > open /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    10851 
    10852 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    10853 level 0.0137, step 1, values float32 
    10854 Opened 1unit_rim.mrc as #2, grid size 250,250,250, pixel 4.3, shown at level
    10855 0.0137, step 1, values float32 
    10856 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    10857 step 1, values float32 
    10858 Opened 1unit_rim.mrc gaussian copy as #5, grid size 250,250,250, pixel 4.3,
    10859 shown at level 0.0137, step 1, values float32 
    10860 Opened 1unit_rim.mrc gaussian copy as #6, grid size 250,250,250, pixel 4.3,
    10861 shown at level 0.0137, step 1, values float32 
    10862 Opened 1unit_rim.mrc gaussian copy as #7, grid size 250,250,250, pixel 4.3,
    10863 shown at level 0.0137, step 1, values float32 
    10864 Opened 1unit_rim.mrc gaussian copy as #8, grid size 250,250,250, pixel 4.3,
    10865 shown at level 0.0137, step 1, values float32 
    10866 Opened 1unit_rim.mrc gaussian copy as #9, grid size 250,250,250, pixel 4.3,
    10867 shown at level 0.0137, step 1, values float32 
    10868 Opened 1unit_rim.mrc gaussian copy as #10, grid size 250,250,250, pixel 4.3,
    10869 shown at level 0.0137, step 1, values float32 
    10870 Opened 1unit_rim.mrc gaussian copy as #11, grid size 250,250,250, pixel 4.3,
    10871 shown at level 0.0137, step 1, values float32 
    10872 Opened 1unit_rim.mrc gaussian copy as #12, grid size 250,250,250, pixel 4.3,
    10873 shown at level 0.0137, step 1, values float32 
    10874 Opened 1unit_rim.mrc gaussian copy as #13, grid size 250,250,250, pixel 4.3,
    10875 shown at level 0.0137, step 1, values float32 
    10876 Opened 1unit_rim.mrc gaussian copy as #14, grid size 250,250,250, pixel 4.3,
    10877 shown at level 0.0137, step 1, values float32 
    10878 Opened 1unit_rim.mrc gaussian copy as #15, grid size 250,250,250, pixel 4.3,
    10879 shown at level 0.0137, step 1, values float32 
    10880 Opened 1unit_rim.mrc gaussian copy as #16, grid size 250,250,250, pixel 4.3,
    10881 shown at level 0.0137, step 1, values float32 
    10882 Opened 1unit_rim.mrc gaussian copy as #17, grid size 250,250,250, pixel 4.3,
    10883 shown at level 0.0137, step 1, values float32 
    10884 Opened 1unit_rim.mrc gaussian copy as #18, grid size 250,250,250, pixel 4.3,
    10885 shown at level 0.0137, step 1, values float32 
    10886 Opened 1unit_rim.mrc gaussian copy as #19, grid size 250,250,250, pixel 4.3,
    10887 shown at level 0.0137, step 1, values float32 
    10888 Opened 1unit_rim.mrc gaussian copy as #20, grid size 250,250,250, pixel 4.3,
    10889 shown at level 0.0137, step 1, values float32 
    10890 Opened 1unit_PflA.mrc as #21, grid size 250,250,250, pixel 4.3, shown at level
    10891 0.0137, step 1, values float32 
    10892 Opened 1unit_PflA.mrc copy as #22, grid size 250,250,250, pixel 4.3, shown at
    10893 level 0.0137, step 1, values float32 
    10894 Opened 1unit_PflA.mrc copy as #23, grid size 250,250,250, pixel 4.3, shown at
    10895 level 0.0137, step 1, values float32 
    10896 Opened 1unit_PflA.mrc copy as #24, grid size 250,250,250, pixel 4.3, shown at
    10897 level 0.0137, step 1, values float32 
    10898 Opened 1unit_PflA.mrc copy as #25, grid size 250,250,250, pixel 4.3, shown at
    10899 level 0.0137, step 1, values float32 
    10900 Opened 1unit_PflA.mrc copy as #26, grid size 250,250,250, pixel 4.3, shown at
    10901 level 0.0137, step 1, values float32 
    10902 Opened 1unit_PflA.mrc copy as #27, grid size 250,250,250, pixel 4.3, shown at
    10903 level 0.0137, step 1, values float32 
    10904 Opened 1unit_PflA.mrc copy as #28, grid size 250,250,250, pixel 4.3, shown at
    10905 level 0.0137, step 1, values float32 
    10906 Opened 1unit_PflA.mrc copy as #29, grid size 250,250,250, pixel 4.3, shown at
    10907 level 0.0137, step 1, values float32 
    10908 Opened 1unit_PflA.mrc copy as #30, grid size 250,250,250, pixel 4.3, shown at
    10909 level 0.0137, step 1, values float32 
    10910 Opened 1unit_PflA.mrc copy as #31, grid size 250,250,250, pixel 4.3, shown at
    10911 level 0.0137, step 1, values float32 
    10912 Opened 1unit_PflA.mrc copy as #32, grid size 250,250,250, pixel 4.3, shown at
    10913 level 0.0137, step 1, values float32 
    10914 Opened 1unit_PflA.mrc copy as #33, grid size 250,250,250, pixel 4.3, shown at
    10915 level 0.0137, step 1, values float32 
    10916 Opened 1unit_PflA.mrc copy as #34, grid size 250,250,250, pixel 4.3, shown at
    10917 level 0.0137, step 1, values float32 
    10918 Opened 1unit_PflA.mrc copy as #35, grid size 250,250,250, pixel 4.3, shown at
    10919 level 0.0137, step 1, values float32 
    10920 Opened 1unit_PflA.mrc copy as #36, grid size 250,250,250, pixel 4.3, shown at
    10921 level 0.0137, step 1, values float32 
    10922 Opened 1unit_PflA.mrc copy as #37, grid size 250,250,250, pixel 4.3, shown at
    10923 level 0.0137, step 1, values float32 
    10924 Opened 1unit_PflA.mrc copy as #38, grid size 250,250,250, pixel 4.3, shown at
    10925 level 0.0137, step 1, values float32 
    10926 Opened FliL_out.mrc copy as #41, grid size 250,250,250, pixel 4.3, shown at
    10927 level 0.0137, step 1, values float32 
    10928 Opened FliL_out.mrc copy as #39, grid size 250,250,250, pixel 4.3, shown at
    10929 level 0.0137, step 1, values float32 
    10930 Opened FliL_out.mrc copy as #40, grid size 250,250,250, pixel 4.3, shown at
    10931 level 0.0137, step 1, values float32 
    10932 Opened FliL_out.mrc copy as #42, grid size 250,250,250, pixel 4.3, shown at
    10933 level 0.0137, step 1, values float32 
    10934 Opened FliL_out.mrc copy as #43, grid size 250,250,250, pixel 4.3, shown at
    10935 level 0.0137, step 1, values float32 
    10936 Opened FliL_out.mrc copy as #44, grid size 250,250,250, pixel 4.3, shown at
    10937 level 0.0137, step 1, values float32 
    10938 Opened FliL_out.mrc copy as #45, grid size 250,250,250, pixel 4.3, shown at
    10939 level 0.0137, step 1, values float32 
    10940 Opened FliL_out.mrc copy as #46, grid size 250,250,250, pixel 4.3, shown at
    10941 level 0.0137, step 1, values float32 
    10942 Opened FliL_out.mrc copy as #47, grid size 250,250,250, pixel 4.3, shown at
    10943 level 0.0137, step 1, values float32 
    10944 Opened FliL_out.mrc copy as #48, grid size 250,250,250, pixel 4.3, shown at
    10945 level 0.0137, step 1, values float32 
    10946 Opened FliL_out.mrc copy as #49, grid size 250,250,250, pixel 4.3, shown at
    10947 level 0.0137, step 1, values float32 
    10948 Opened FliL_out.mrc copy as #50, grid size 250,250,250, pixel 4.3, shown at
    10949 level 0.0137, step 1, values float32 
    10950 Opened FliL_out.mrc copy as #51, grid size 250,250,250, pixel 4.3, shown at
    10951 level 0.0137, step 1, values float32 
    10952 Opened FliL_out.mrc copy as #52, grid size 250,250,250, pixel 4.3, shown at
    10953 level 0.0137, step 1, values float32 
    10954 Opened FliL_out.mrc copy as #53, grid size 250,250,250, pixel 4.3, shown at
    10955 level 0.0137, step 1, values float32 
    10956 Opened FliL_out.mrc copy as #54, grid size 250,250,250, pixel 4.3, shown at
    10957 level 0.0137, step 1, values float32 
    10958 Opened FliL_out.mrc copy as #55, grid size 250,250,250, pixel 4.3, shown at
    10959 level 0.0137, step 1, values float32 
    10960 Opened FliL_out.mrc copy as #56, grid size 250,250,250, pixel 4.3, shown at
    10961 level 0.0137, step 1, values float32 
    10962 Opened FliL.mrc as #57, grid size 250,250,250, pixel 4.3, shown at level
    10963 0.0137, step 1, values float32 
    10964 Opened Cage-Mono-Good.mrc as #58, grid size 250,250,250, pixel 4.3, shown at
    10965 level 0.0137, step 1, values float32 
    10966 Opened Cage-Mono-Good.mrc copy as #59, grid size 250,250,250, pixel 4.3, shown
    10967 at level 0.0137, step 1, values float32 
    10968 Opened Cage-Mono-Good.mrc copy as #60, grid size 250,250,250, pixel 4.3, shown
    10969 at level 0.0137, step 1, values float32 
    10970 Opened Cage-Mono-Good.mrc copy as #61, grid size 250,250,250, pixel 4.3, shown
    10971 at level 0.0137, step 1, values float32 
    10972 Opened Cage-Mono-Good.mrc copy as #62, grid size 250,250,250, pixel 4.3, shown
    10973 at level 0.0137, step 1, values float32 
    10974 Opened Cage-Mono-Good.mrc copy as #63, grid size 250,250,250, pixel 4.3, shown
    10975 at level 0.0137, step 1, values float32 
    10976 Opened Cage-Mono-Good.mrc copy as #64, grid size 250,250,250, pixel 4.3, shown
    10977 at level 0.0137, step 1, values float32 
    10978 Opened Cage-Mono-Good.mrc copy as #65, grid size 250,250,250, pixel 4.3, shown
    10979 at level 0.0137, step 1, values float32 
    10980 Opened Cage-Mono-Good.mrc copy as #66, grid size 250,250,250, pixel 4.3, shown
    10981 at level 0.0137, step 1, values float32 
    10982 Opened Cage-Mono-Good.mrc copy as #67, grid size 250,250,250, pixel 4.3, shown
    10983 at level 0.0137, step 1, values float32 
    10984 Opened Cage-Mono-Good.mrc copy as #68, grid size 250,250,250, pixel 4.3, shown
    10985 at level 0.0137, step 1, values float32 
    10986 Opened Cage-Mono-Good.mrc copy as #69, grid size 250,250,250, pixel 4.3, shown
    10987 at level 0.0137, step 1, values float32 
    10988 Opened Cage-Mono-Good.mrc copy as #70, grid size 250,250,250, pixel 4.3, shown
    10989 at level 0.0137, step 1, values float32 
    10990 Opened Cage-Mono-Good.mrc copy as #71, grid size 250,250,250, pixel 4.3, shown
    10991 at level 0.0137, step 1, values float32 
    10992 Opened Cage-Mono-Good.mrc copy as #72, grid size 250,250,250, pixel 4.3, shown
    10993 at level 0.0137, step 1, values float32 
    10994 Opened Cage-Mono-Good.mrc copy as #73, grid size 250,250,250, pixel 4.3, shown
    10995 at level 0.0137, step 1, values float32 
    10996 Opened Cage-Mono-Good.mrc copy as #74, grid size 250,250,250, pixel 4.3, shown
    10997 at level 0.0137, step 1, values float32 
    10998 Opened Cage-Mono-Good.mrc copy as #75, grid size 250,250,250, pixel 4.3, shown
    10999 at level 0.0137, step 1, values float32 
    11000 Opened MS-ring.mrc as #76, grid size 250,250,250, pixel 4.3, shown at level
    11001 0.0137, step 1, values float32 
    11002 Opened E-ring.mrc gaussian as #78, grid size 250,250,250, pixel 4.3, shown at
    11003 level 0.114, step 1, values float32 
    11004 Opened 1unit_rim.mrc gaussian as #4, grid size 250,250,250, pixel 4.3, shown
    11005 at level 0.0137, step 1, values float32 
    11006 Opened Basal_disk.mrc gaussian as #79, grid size 250,250,250, pixel 4.3, shown
    11007 at level 0.0595, step 1, values float32 
    11008 Opened C-ring-stators.mrc as #77, grid size 250,250,250, pixel 4.3, shown at
    11009 level 0.0137, step 1, values float32 
    11010 Opened C-Vring.mrc as #80, grid size 250,250,250, pixel 4.3, shown at level
    11011 0.0137, step 1, values float32 
    11012 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    11013 level 0.0137, step 1, values float32 
    11014 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    11015 level 0.0137, step 1, values float32 
    11016 Opened MotB.mrc as #81, grid size 250,250,250, pixel 4.3, shown at level
    11017 0.0137, step 1, values float32 
    11018 Opened PflC.mrc gaussian as #85, grid size 250,250,250, pixel 4.3, shown at
    11019 level 0.0439, step 1, values float32 
    11020 Opened PflD.mrc as #86, grid size 250,250,250, pixel 4.3, shown at level
    11021 0.0137, step 1, values float32 
    11022 Opened PilM.mrc gaussian as #84, grid size 250,250,250, pixel 4.3, shown at
    11023 level 0.0137, step 1, values float32 
    11024 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    11025 level 0.027, step 1, values float32 
    11026 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    11027 step 1, values float32 
    11028 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    11029 level 0.0166, step 1, values float32 
    11030 Opened C17-FlgY_New.mrc as #90, grid size 256,256,256, pixel 2.14, shown at
    11031 level 0.0212, step 1, values float32 
    11032 Opened MS-ring_New.mrc as #91, grid size 256,256,256, pixel 2.14, shown at
    11033 level 0.0165, step 1, values float32 
    11034 Opened Single_Cage_unit.mrc as #92, grid size 200,200,200, pixel 2.14, shown
    11035 at level 0.00159, step 1, values float32 
    11036 Opened Single_MotBpg_unit.mrc as #93, grid size 200,200,200, pixel 2.14, shown
    11037 at level 0.000906, step 1, values float32 
    11038 Log from Tue Sep 9 10:34:35 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    11039 © 2016-2024 Regents of the University of California. All rights reserved. 
    11040 
    11041 > open /Users/shoichi/Desktop/For_Composition-maps/Global_Segment_Fig1.cxs
    11042 
    11043 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    11044 level 0.0137, step 1, values float32 
    11045 Opened 1unit_rim.mrc as #2, grid size 250,250,250, pixel 4.3, shown at level
    11046 0.0137, step 1, values float32 
    11047 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    11048 step 1, values float32 
    11049 Opened 1unit_rim.mrc gaussian copy as #5, grid size 250,250,250, pixel 4.3,
    11050 shown at level 0.0137, step 1, values float32 
    11051 Opened 1unit_rim.mrc gaussian copy as #6, grid size 250,250,250, pixel 4.3,
    11052 shown at level 0.0137, step 1, values float32 
    11053 Opened 1unit_rim.mrc gaussian copy as #7, grid size 250,250,250, pixel 4.3,
    11054 shown at level 0.0137, step 1, values float32 
    11055 Opened 1unit_rim.mrc gaussian copy as #8, grid size 250,250,250, pixel 4.3,
    11056 shown at level 0.0137, step 1, values float32 
    11057 Opened 1unit_rim.mrc gaussian copy as #9, grid size 250,250,250, pixel 4.3,
    11058 shown at level 0.0137, step 1, values float32 
    11059 Opened 1unit_rim.mrc gaussian copy as #10, grid size 250,250,250, pixel 4.3,
    11060 shown at level 0.0137, step 1, values float32 
    11061 Opened 1unit_rim.mrc gaussian copy as #11, grid size 250,250,250, pixel 4.3,
    11062 shown at level 0.0137, step 1, values float32 
    11063 Opened 1unit_rim.mrc gaussian copy as #12, grid size 250,250,250, pixel 4.3,
    11064 shown at level 0.0137, step 1, values float32 
    11065 Opened 1unit_rim.mrc gaussian copy as #13, grid size 250,250,250, pixel 4.3,
    11066 shown at level 0.0137, step 1, values float32 
    11067 Opened 1unit_rim.mrc gaussian copy as #14, grid size 250,250,250, pixel 4.3,
    11068 shown at level 0.0137, step 1, values float32 
    11069 Opened 1unit_rim.mrc gaussian copy as #15, grid size 250,250,250, pixel 4.3,
    11070 shown at level 0.0137, step 1, values float32 
    11071 Opened 1unit_rim.mrc gaussian copy as #16, grid size 250,250,250, pixel 4.3,
    11072 shown at level 0.0137, step 1, values float32 
    11073 Opened 1unit_rim.mrc gaussian copy as #17, grid size 250,250,250, pixel 4.3,
    11074 shown at level 0.0137, step 1, values float32 
    11075 Opened 1unit_rim.mrc gaussian copy as #18, grid size 250,250,250, pixel 4.3,
    11076 shown at level 0.0137, step 1, values float32 
    11077 Opened 1unit_rim.mrc gaussian copy as #19, grid size 250,250,250, pixel 4.3,
    11078 shown at level 0.0137, step 1, values float32 
    11079 Opened 1unit_rim.mrc gaussian copy as #20, grid size 250,250,250, pixel 4.3,
    11080 shown at level 0.0137, step 1, values float32 
    11081 Opened 1unit_PflA.mrc as #21, grid size 250,250,250, pixel 4.3, shown at level
    11082 0.0137, step 1, values float32 
    11083 Opened 1unit_PflA.mrc copy as #22, grid size 250,250,250, pixel 4.3, shown at
    11084 level 0.0137, step 1, values float32 
    11085 Opened 1unit_PflA.mrc copy as #23, grid size 250,250,250, pixel 4.3, shown at
    11086 level 0.0137, step 1, values float32 
    11087 Opened 1unit_PflA.mrc copy as #24, grid size 250,250,250, pixel 4.3, shown at
    11088 level 0.0137, step 1, values float32 
    11089 Opened 1unit_PflA.mrc copy as #25, grid size 250,250,250, pixel 4.3, shown at
    11090 level 0.0137, step 1, values float32 
    11091 Opened 1unit_PflA.mrc copy as #26, grid size 250,250,250, pixel 4.3, shown at
    11092 level 0.0137, step 1, values float32 
    11093 Opened 1unit_PflA.mrc copy as #27, grid size 250,250,250, pixel 4.3, shown at
    11094 level 0.0137, step 1, values float32 
    11095 Opened 1unit_PflA.mrc copy as #28, grid size 250,250,250, pixel 4.3, shown at
    11096 level 0.0137, step 1, values float32 
    11097 Opened 1unit_PflA.mrc copy as #29, grid size 250,250,250, pixel 4.3, shown at
    11098 level 0.0137, step 1, values float32 
    11099 Opened 1unit_PflA.mrc copy as #30, grid size 250,250,250, pixel 4.3, shown at
    11100 level 0.0137, step 1, values float32 
    11101 Opened 1unit_PflA.mrc copy as #31, grid size 250,250,250, pixel 4.3, shown at
    11102 level 0.0137, step 1, values float32 
    11103 Opened 1unit_PflA.mrc copy as #32, grid size 250,250,250, pixel 4.3, shown at
    11104 level 0.0137, step 1, values float32 
    11105 Opened 1unit_PflA.mrc copy as #33, grid size 250,250,250, pixel 4.3, shown at
    11106 level 0.0137, step 1, values float32 
    11107 Opened 1unit_PflA.mrc copy as #34, grid size 250,250,250, pixel 4.3, shown at
    11108 level 0.0137, step 1, values float32 
    11109 Opened 1unit_PflA.mrc copy as #35, grid size 250,250,250, pixel 4.3, shown at
    11110 level 0.0137, step 1, values float32 
    11111 Opened 1unit_PflA.mrc copy as #36, grid size 250,250,250, pixel 4.3, shown at
    11112 level 0.0137, step 1, values float32 
    11113 Opened 1unit_PflA.mrc copy as #37, grid size 250,250,250, pixel 4.3, shown at
    11114 level 0.0137, step 1, values float32 
    11115 Opened 1unit_PflA.mrc copy as #38, grid size 250,250,250, pixel 4.3, shown at
    11116 level 0.0137, step 1, values float32 
    11117 Opened FliL_out.mrc copy as #41, grid size 250,250,250, pixel 4.3, shown at
    11118 level 0.0137, step 1, values float32 
    11119 Opened FliL_out.mrc copy as #39, grid size 250,250,250, pixel 4.3, shown at
    11120 level 0.0137, step 1, values float32 
    11121 Opened FliL_out.mrc copy as #40, grid size 250,250,250, pixel 4.3, shown at
    11122 level 0.0137, step 1, values float32 
    11123 Opened FliL_out.mrc copy as #42, grid size 250,250,250, pixel 4.3, shown at
    11124 level 0.0137, step 1, values float32 
    11125 Opened FliL_out.mrc copy as #43, grid size 250,250,250, pixel 4.3, shown at
    11126 level 0.0137, step 1, values float32 
    11127 Opened FliL_out.mrc copy as #44, grid size 250,250,250, pixel 4.3, shown at
    11128 level 0.0137, step 1, values float32 
    11129 Opened FliL_out.mrc copy as #45, grid size 250,250,250, pixel 4.3, shown at
    11130 level 0.0137, step 1, values float32 
    11131 Opened FliL_out.mrc copy as #46, grid size 250,250,250, pixel 4.3, shown at
    11132 level 0.0137, step 1, values float32 
    11133 Opened FliL_out.mrc copy as #47, grid size 250,250,250, pixel 4.3, shown at
    11134 level 0.0137, step 1, values float32 
    11135 Opened FliL_out.mrc copy as #48, grid size 250,250,250, pixel 4.3, shown at
    11136 level 0.0137, step 1, values float32 
    11137 Opened FliL_out.mrc copy as #49, grid size 250,250,250, pixel 4.3, shown at
    11138 level 0.0137, step 1, values float32 
    11139 Opened FliL_out.mrc copy as #50, grid size 250,250,250, pixel 4.3, shown at
    11140 level 0.0137, step 1, values float32 
    11141 Opened FliL_out.mrc copy as #51, grid size 250,250,250, pixel 4.3, shown at
    11142 level 0.0137, step 1, values float32 
    11143 Opened FliL_out.mrc copy as #52, grid size 250,250,250, pixel 4.3, shown at
    11144 level 0.0137, step 1, values float32 
    11145 Opened FliL_out.mrc copy as #53, grid size 250,250,250, pixel 4.3, shown at
    11146 level 0.0137, step 1, values float32 
    11147 Opened FliL_out.mrc copy as #54, grid size 250,250,250, pixel 4.3, shown at
    11148 level 0.0137, step 1, values float32 
    11149 Opened FliL_out.mrc copy as #55, grid size 250,250,250, pixel 4.3, shown at
    11150 level 0.0137, step 1, values float32 
    11151 Opened FliL_out.mrc copy as #56, grid size 250,250,250, pixel 4.3, shown at
    11152 level 0.0137, step 1, values float32 
    11153 Opened FliL.mrc as #57, grid size 250,250,250, pixel 4.3, shown at level
    11154 0.0137, step 1, values float32 
    11155 Opened Cage-Mono-Good.mrc as #58, grid size 250,250,250, pixel 4.3, shown at
    11156 level 0.0137, step 1, values float32 
    11157 Opened Cage-Mono-Good.mrc copy as #59, grid size 250,250,250, pixel 4.3, shown
    11158 at level 0.0137, step 1, values float32 
    11159 Opened Cage-Mono-Good.mrc copy as #60, grid size 250,250,250, pixel 4.3, shown
    11160 at level 0.0137, step 1, values float32 
    11161 Opened Cage-Mono-Good.mrc copy as #61, grid size 250,250,250, pixel 4.3, shown
    11162 at level 0.0137, step 1, values float32 
    11163 Opened Cage-Mono-Good.mrc copy as #62, grid size 250,250,250, pixel 4.3, shown
    11164 at level 0.0137, step 1, values float32 
    11165 Opened Cage-Mono-Good.mrc copy as #63, grid size 250,250,250, pixel 4.3, shown
    11166 at level 0.0137, step 1, values float32 
    11167 Opened Cage-Mono-Good.mrc copy as #64, grid size 250,250,250, pixel 4.3, shown
    11168 at level 0.0137, step 1, values float32 
    11169 Opened Cage-Mono-Good.mrc copy as #65, grid size 250,250,250, pixel 4.3, shown
    11170 at level 0.0137, step 1, values float32 
    11171 Opened Cage-Mono-Good.mrc copy as #66, grid size 250,250,250, pixel 4.3, shown
    11172 at level 0.0137, step 1, values float32 
    11173 Opened Cage-Mono-Good.mrc copy as #67, grid size 250,250,250, pixel 4.3, shown
    11174 at level 0.0137, step 1, values float32 
    11175 Opened Cage-Mono-Good.mrc copy as #68, grid size 250,250,250, pixel 4.3, shown
    11176 at level 0.0137, step 1, values float32 
    11177 Opened Cage-Mono-Good.mrc copy as #69, grid size 250,250,250, pixel 4.3, shown
    11178 at level 0.0137, step 1, values float32 
    11179 Opened Cage-Mono-Good.mrc copy as #70, grid size 250,250,250, pixel 4.3, shown
    11180 at level 0.0137, step 1, values float32 
    11181 Opened Cage-Mono-Good.mrc copy as #71, grid size 250,250,250, pixel 4.3, shown
    11182 at level 0.0137, step 1, values float32 
    11183 Opened Cage-Mono-Good.mrc copy as #72, grid size 250,250,250, pixel 4.3, shown
    11184 at level 0.0137, step 1, values float32 
    11185 Opened Cage-Mono-Good.mrc copy as #73, grid size 250,250,250, pixel 4.3, shown
    11186 at level 0.0137, step 1, values float32 
    11187 Opened Cage-Mono-Good.mrc copy as #74, grid size 250,250,250, pixel 4.3, shown
    11188 at level 0.0137, step 1, values float32 
    11189 Opened Cage-Mono-Good.mrc copy as #75, grid size 250,250,250, pixel 4.3, shown
    11190 at level 0.0137, step 1, values float32 
    11191 Opened MS-ring.mrc as #76, grid size 250,250,250, pixel 4.3, shown at level
    11192 0.0137, step 1, values float32 
    11193 Opened E-ring.mrc gaussian as #78, grid size 250,250,250, pixel 4.3, shown at
    11194 level 0.114, step 1, values float32 
    11195 Opened 1unit_rim.mrc gaussian as #4, grid size 250,250,250, pixel 4.3, shown
    11196 at level 0.0137, step 1, values float32 
    11197 Opened Basal_disk.mrc gaussian as #79, grid size 250,250,250, pixel 4.3, shown
    11198 at level 0.0595, step 1, values float32 
    11199 Opened C-ring-stators.mrc as #77, grid size 250,250,250, pixel 4.3, shown at
    11200 level 0.0137, step 1, values float32 
    11201 Opened C-Vring.mrc as #80, grid size 250,250,250, pixel 4.3, shown at level
    11202 0.0137, step 1, values float32 
    11203 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    11204 level 0.0137, step 1, values float32 
    11205 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    11206 level 0.0137, step 1, values float32 
    11207 Opened MotB.mrc as #81, grid size 250,250,250, pixel 4.3, shown at level
    11208 0.0137, step 1, values float32 
    11209 Opened PflC.mrc gaussian as #85, grid size 250,250,250, pixel 4.3, shown at
    11210 level 0.0439, step 1, values float32 
    11211 Opened PflD.mrc as #86, grid size 250,250,250, pixel 4.3, shown at level
    11212 0.0137, step 1, values float32 
    11213 Opened PilM.mrc gaussian as #84, grid size 250,250,250, pixel 4.3, shown at
    11214 level 0.0137, step 1, values float32 
    11215 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    11216 level 0.027, step 1, values float32 
    11217 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    11218 step 1, values float32 
    11219 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    11220 level 0.0166, step 1, values float32 
    11221 Log from Tue Sep 9 09:30:49 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    11222 © 2016-2024 Regents of the University of California. All rights reserved. 
    11223 
    11224 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    11225 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    11226 > review/Updated_Figures/07252025/Original-map-deposit/Seg/Figure-1.cxs"
    11227 
    11228 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    11229 level 0.0137, step 1, values float32 
    11230 Opened 1unit_rim.mrc as #2, grid size 250,250,250, pixel 4.3, shown at level
    11231 0.0137, step 1, values float32 
    11232 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    11233 step 1, values float32 
    11234 Opened 1unit_rim.mrc gaussian copy as #5, grid size 250,250,250, pixel 4.3,
    11235 shown at level 0.0137, step 1, values float32 
    11236 Opened 1unit_rim.mrc gaussian copy as #6, grid size 250,250,250, pixel 4.3,
    11237 shown at level 0.0137, step 1, values float32 
    11238 Opened 1unit_rim.mrc gaussian copy as #7, grid size 250,250,250, pixel 4.3,
    11239 shown at level 0.0137, step 1, values float32 
    11240 Opened 1unit_rim.mrc gaussian copy as #8, grid size 250,250,250, pixel 4.3,
    11241 shown at level 0.0137, step 1, values float32 
    11242 Opened 1unit_rim.mrc gaussian copy as #9, grid size 250,250,250, pixel 4.3,
    11243 shown at level 0.0137, step 1, values float32 
    11244 Opened 1unit_rim.mrc gaussian copy as #10, grid size 250,250,250, pixel 4.3,
    11245 shown at level 0.0137, step 1, values float32 
    11246 Opened 1unit_rim.mrc gaussian copy as #11, grid size 250,250,250, pixel 4.3,
    11247 shown at level 0.0137, step 1, values float32 
    11248 Opened 1unit_rim.mrc gaussian copy as #12, grid size 250,250,250, pixel 4.3,
    11249 shown at level 0.0137, step 1, values float32 
    11250 Opened 1unit_rim.mrc gaussian copy as #13, grid size 250,250,250, pixel 4.3,
    11251 shown at level 0.0137, step 1, values float32 
    11252 Opened 1unit_rim.mrc gaussian copy as #14, grid size 250,250,250, pixel 4.3,
    11253 shown at level 0.0137, step 1, values float32 
    11254 Opened 1unit_rim.mrc gaussian copy as #15, grid size 250,250,250, pixel 4.3,
    11255 shown at level 0.0137, step 1, values float32 
    11256 Opened 1unit_rim.mrc gaussian copy as #16, grid size 250,250,250, pixel 4.3,
    11257 shown at level 0.0137, step 1, values float32 
    11258 Opened 1unit_rim.mrc gaussian copy as #17, grid size 250,250,250, pixel 4.3,
    11259 shown at level 0.0137, step 1, values float32 
    11260 Opened 1unit_rim.mrc gaussian copy as #18, grid size 250,250,250, pixel 4.3,
    11261 shown at level 0.0137, step 1, values float32 
    11262 Opened 1unit_rim.mrc gaussian copy as #19, grid size 250,250,250, pixel 4.3,
    11263 shown at level 0.0137, step 1, values float32 
    11264 Opened 1unit_rim.mrc gaussian copy as #20, grid size 250,250,250, pixel 4.3,
    11265 shown at level 0.0137, step 1, values float32 
    11266 Opened 1unit_PflA.mrc as #21, grid size 250,250,250, pixel 4.3, shown at level
    11267 0.0137, step 1, values float32 
    11268 Opened 1unit_PflA.mrc copy as #22, grid size 250,250,250, pixel 4.3, shown at
    11269 level 0.0137, step 1, values float32 
    11270 Opened 1unit_PflA.mrc copy as #23, grid size 250,250,250, pixel 4.3, shown at
    11271 level 0.0137, step 1, values float32 
    11272 Opened 1unit_PflA.mrc copy as #24, grid size 250,250,250, pixel 4.3, shown at
    11273 level 0.0137, step 1, values float32 
    11274 Opened 1unit_PflA.mrc copy as #25, grid size 250,250,250, pixel 4.3, shown at
    11275 level 0.0137, step 1, values float32 
    11276 Opened 1unit_PflA.mrc copy as #26, grid size 250,250,250, pixel 4.3, shown at
    11277 level 0.0137, step 1, values float32 
    11278 Opened 1unit_PflA.mrc copy as #27, grid size 250,250,250, pixel 4.3, shown at
    11279 level 0.0137, step 1, values float32 
    11280 Opened 1unit_PflA.mrc copy as #28, grid size 250,250,250, pixel 4.3, shown at
    11281 level 0.0137, step 1, values float32 
    11282 Opened 1unit_PflA.mrc copy as #29, grid size 250,250,250, pixel 4.3, shown at
    11283 level 0.0137, step 1, values float32 
    11284 Opened 1unit_PflA.mrc copy as #30, grid size 250,250,250, pixel 4.3, shown at
    11285 level 0.0137, step 1, values float32 
    11286 Opened 1unit_PflA.mrc copy as #31, grid size 250,250,250, pixel 4.3, shown at
    11287 level 0.0137, step 1, values float32 
    11288 Opened 1unit_PflA.mrc copy as #32, grid size 250,250,250, pixel 4.3, shown at
    11289 level 0.0137, step 1, values float32 
    11290 Opened 1unit_PflA.mrc copy as #33, grid size 250,250,250, pixel 4.3, shown at
    11291 level 0.0137, step 1, values float32 
    11292 Opened 1unit_PflA.mrc copy as #34, grid size 250,250,250, pixel 4.3, shown at
    11293 level 0.0137, step 1, values float32 
    11294 Opened 1unit_PflA.mrc copy as #35, grid size 250,250,250, pixel 4.3, shown at
    11295 level 0.0137, step 1, values float32 
    11296 Opened 1unit_PflA.mrc copy as #36, grid size 250,250,250, pixel 4.3, shown at
    11297 level 0.0137, step 1, values float32 
    11298 Opened 1unit_PflA.mrc copy as #37, grid size 250,250,250, pixel 4.3, shown at
    11299 level 0.0137, step 1, values float32 
    11300 Opened 1unit_PflA.mrc copy as #38, grid size 250,250,250, pixel 4.3, shown at
    11301 level 0.0137, step 1, values float32 
    11302 Opened FliL_out.mrc copy as #41, grid size 250,250,250, pixel 4.3, shown at
    11303 level 0.0137, step 1, values float32 
    11304 Opened FliL_out.mrc copy as #39, grid size 250,250,250, pixel 4.3, shown at
    11305 level 0.0137, step 1, values float32 
    11306 Opened FliL_out.mrc copy as #40, grid size 250,250,250, pixel 4.3, shown at
    11307 level 0.0137, step 1, values float32 
    11308 Opened FliL_out.mrc copy as #42, grid size 250,250,250, pixel 4.3, shown at
    11309 level 0.0137, step 1, values float32 
    11310 Opened FliL_out.mrc copy as #43, grid size 250,250,250, pixel 4.3, shown at
    11311 level 0.0137, step 1, values float32 
    11312 Opened FliL_out.mrc copy as #44, grid size 250,250,250, pixel 4.3, shown at
    11313 level 0.0137, step 1, values float32 
    11314 Opened FliL_out.mrc copy as #45, grid size 250,250,250, pixel 4.3, shown at
    11315 level 0.0137, step 1, values float32 
    11316 Opened FliL_out.mrc copy as #46, grid size 250,250,250, pixel 4.3, shown at
    11317 level 0.0137, step 1, values float32 
    11318 Opened FliL_out.mrc copy as #47, grid size 250,250,250, pixel 4.3, shown at
    11319 level 0.0137, step 1, values float32 
    11320 Opened FliL_out.mrc copy as #48, grid size 250,250,250, pixel 4.3, shown at
    11321 level 0.0137, step 1, values float32 
    11322 Opened FliL_out.mrc copy as #49, grid size 250,250,250, pixel 4.3, shown at
    11323 level 0.0137, step 1, values float32 
    11324 Opened FliL_out.mrc copy as #50, grid size 250,250,250, pixel 4.3, shown at
    11325 level 0.0137, step 1, values float32 
    11326 Opened FliL_out.mrc copy as #51, grid size 250,250,250, pixel 4.3, shown at
    11327 level 0.0137, step 1, values float32 
    11328 Opened FliL_out.mrc copy as #52, grid size 250,250,250, pixel 4.3, shown at
    11329 level 0.0137, step 1, values float32 
    11330 Opened FliL_out.mrc copy as #53, grid size 250,250,250, pixel 4.3, shown at
    11331 level 0.0137, step 1, values float32 
    11332 Opened FliL_out.mrc copy as #54, grid size 250,250,250, pixel 4.3, shown at
    11333 level 0.0137, step 1, values float32 
    11334 Opened FliL_out.mrc copy as #55, grid size 250,250,250, pixel 4.3, shown at
    11335 level 0.0137, step 1, values float32 
    11336 Opened FliL_out.mrc copy as #56, grid size 250,250,250, pixel 4.3, shown at
    11337 level 0.0137, step 1, values float32 
    11338 Opened FliL.mrc as #57, grid size 250,250,250, pixel 4.3, shown at level
    11339 0.0137, step 1, values float32 
    11340 Opened Cage-Mono-Good.mrc as #58, grid size 250,250,250, pixel 4.3, shown at
    11341 level 0.0137, step 1, values float32 
    11342 Opened Cage-Mono-Good.mrc copy as #59, grid size 250,250,250, pixel 4.3, shown
    11343 at level 0.0137, step 1, values float32 
    11344 Opened Cage-Mono-Good.mrc copy as #60, grid size 250,250,250, pixel 4.3, shown
    11345 at level 0.0137, step 1, values float32 
    11346 Opened Cage-Mono-Good.mrc copy as #61, grid size 250,250,250, pixel 4.3, shown
    11347 at level 0.0137, step 1, values float32 
    11348 Opened Cage-Mono-Good.mrc copy as #62, grid size 250,250,250, pixel 4.3, shown
    11349 at level 0.0137, step 1, values float32 
    11350 Opened Cage-Mono-Good.mrc copy as #63, grid size 250,250,250, pixel 4.3, shown
    11351 at level 0.0137, step 1, values float32 
    11352 Opened Cage-Mono-Good.mrc copy as #64, grid size 250,250,250, pixel 4.3, shown
    11353 at level 0.0137, step 1, values float32 
    11354 Opened Cage-Mono-Good.mrc copy as #65, grid size 250,250,250, pixel 4.3, shown
    11355 at level 0.0137, step 1, values float32 
    11356 Opened Cage-Mono-Good.mrc copy as #66, grid size 250,250,250, pixel 4.3, shown
    11357 at level 0.0137, step 1, values float32 
    11358 Opened Cage-Mono-Good.mrc copy as #67, grid size 250,250,250, pixel 4.3, shown
    11359 at level 0.0137, step 1, values float32 
    11360 Opened Cage-Mono-Good.mrc copy as #68, grid size 250,250,250, pixel 4.3, shown
    11361 at level 0.0137, step 1, values float32 
    11362 Opened Cage-Mono-Good.mrc copy as #69, grid size 250,250,250, pixel 4.3, shown
    11363 at level 0.0137, step 1, values float32 
    11364 Opened Cage-Mono-Good.mrc copy as #70, grid size 250,250,250, pixel 4.3, shown
    11365 at level 0.0137, step 1, values float32 
    11366 Opened Cage-Mono-Good.mrc copy as #71, grid size 250,250,250, pixel 4.3, shown
    11367 at level 0.0137, step 1, values float32 
    11368 Opened Cage-Mono-Good.mrc copy as #72, grid size 250,250,250, pixel 4.3, shown
    11369 at level 0.0137, step 1, values float32 
    11370 Opened Cage-Mono-Good.mrc copy as #73, grid size 250,250,250, pixel 4.3, shown
    11371 at level 0.0137, step 1, values float32 
    11372 Opened Cage-Mono-Good.mrc copy as #74, grid size 250,250,250, pixel 4.3, shown
    11373 at level 0.0137, step 1, values float32 
    11374 Opened Cage-Mono-Good.mrc copy as #75, grid size 250,250,250, pixel 4.3, shown
    11375 at level 0.0137, step 1, values float32 
    11376 Opened MS-ring.mrc as #76, grid size 250,250,250, pixel 4.3, shown at level
    11377 0.0137, step 1, values float32 
    11378 Opened E-ring.mrc gaussian as #78, grid size 250,250,250, pixel 4.3, shown at
    11379 level 0.114, step 1, values float32 
    11380 Opened 1unit_rim.mrc gaussian as #4, grid size 250,250,250, pixel 4.3, shown
    11381 at level 0.0137, step 1, values float32 
    11382 Opened Basal_disk.mrc gaussian as #79, grid size 250,250,250, pixel 4.3, shown
    11383 at level 0.0595, step 1, values float32 
    11384 Opened C-ring-stators.mrc as #77, grid size 250,250,250, pixel 4.3, shown at
    11385 level 0.0137, step 1, values float32 
    11386 Opened C-Vring.mrc as #80, grid size 250,250,250, pixel 4.3, shown at level
    11387 0.0137, step 1, values float32 
    11388 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    11389 level 0.0137, step 1, values float32 
    11390 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    11391 level 0.0137, step 1, values float32 
    11392 Opened MotB.mrc as #81, grid size 250,250,250, pixel 4.3, shown at level
    11393 0.0137, step 1, values float32 
    11394 Opened PflC.mrc gaussian as #85, grid size 250,250,250, pixel 4.3, shown at
    11395 level 0.0439, step 1, values float32 
    11396 Opened PflD.mrc as #86, grid size 250,250,250, pixel 4.3, shown at level
    11397 0.0137, step 1, values float32 
    11398 Opened PilM.mrc gaussian as #84, grid size 250,250,250, pixel 4.3, shown at
    11399 level 0.0137, step 1, values float32 
    11400 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    11401 level 0.027, step 1, values float32 
    11402 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    11403 step 1, values float32 
    11404 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    11405 level 0.0166, step 1, values float32 
    11406 Log from Fri Jul 25 22:07:01 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    11407 © 2016-2024 Regents of the University of California. All rights reserved. 
    11408 
    11409 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    11410 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    11411 > review/Updated_Figures/07252025/Original-map-deposit/Seg/Segmentation.cxs"
    11412 
    11413 Opened L0.12-Wild-type_EMD_45507.mrc as #1, grid size 250,250,250, pixel 4.3,
    11414 shown at level 0.0107, step 1, values float32 
    11415 Opened OM.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0107,
    11416 step 1, values float32 
    11417 Opened L0.12-Wild-type_EMD_45507_imasked as #4, grid size 250,250,250, pixel
    11418 4.3, shown at level 0.0107, step 1, values float32 
    11419 Opened Basal_disk.mrc as #5, grid size 250,250,250, pixel 4.3, shown at level
    11420 0.0107, step 1, values float32 
    11421 Opened L0_imasked as #6, grid size 250,250,250, pixel 4.3, shown at level
    11422 0.0107, step 1, values float32 
    11423 Opened LP-ring.mrc as #7, grid size 250,250,250, pixel 4.3, shown at level
    11424 0.0107, step 1, values float32 
    11425 Opened L0_imasked_imasked as #8, grid size 250,250,250, pixel 4.3, shown at
    11426 level 0.0107, step 1, values float32 
    11427 Opened PflC.mrc as #9, grid size 250,250,250, pixel 4.3, shown at level
    11428 0.0107, step 1, values float32 
    11429 Opened L0_imasked_imasked_imasked as #10, grid size 250,250,250, pixel 4.3,
    11430 shown at level 0.0107, step 1, values float32 
    11431 Opened PflD.mrc as #11, grid size 250,250,250, pixel 4.3, shown at level
    11432 0.0107, step 1, values float32 
    11433 Opened L0_imasked_imasked_imasked_imasked as #12, grid size 250,250,250, pixel
    11434 4.3, shown at level 0.0107, step 1, values float32 
    11435 Opened L0_imasked_imasked_imasked_imasked_imasked as #13, grid size
    11436 250,250,250, pixel 4.3, shown at level 0.0107, step 1, values float32 
    11437 Opened L0_imasked_imasked_imasked_imasked_imasked_imasked as #14, grid size
    11438 250,250,250, pixel 4.3, shown at level 0.0107, step 1, values float32 
    11439 Opened PilM.mrc as #15, grid size 250,250,250, pixel 4.3, shown at level
    11440 0.0107, step 1, values float32 
    11441 Opened L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #16, grid
    11442 size 250,250,250, pixel 4.3, shown at level 0.0107, step 1, values float32 
    11443 Opened Exp_ATP.mrc as #17, grid size 250,250,250, pixel 4.3, shown at level
    11444 0.0107, step 1, values float32 
    11445 Opened L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
    11446 #18, grid size 250,250,250, pixel 4.3, shown at level 0.0107, step 1, values
    11447 float32 
    11448 Opened C-ring-stators.mrc as #19, grid size 250,250,250, pixel 4.3, shown at
    11449 level 0.0107, step 1, values float32 
    11450 Opened
    11451 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
    11452 #20, grid size 250,250,250, pixel 4.3, shown at level 0.0107, step 1, values
    11453 float32 
    11454 Opened C-Vring.mrc as #21, grid size 250,250,250, pixel 4.3, shown at level
    11455 0.0107, step 1, values float32 
    11456 Opened
    11457 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    11458 as #22, grid size 250,250,250, pixel 4.3, shown at level 0.0107, step 1,
    11459 values float32 
    11460 Opened
    11461 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    11462 as #23, grid size 250,250,250, pixel 4.3, shown at level 0.0107, step 1,
    11463 values float32 
    11464 Opened Cage-C17.mrc as #24, grid size 250,250,250, pixel 4.3, shown at level
    11465 0.0107, step 1, values float32 
    11466 Opened Cage-Mono-Good.mrc as #25, grid size 250,250,250, pixel 4.3, shown at
    11467 level 0.0107, step 1, values float32 
    11468 Opened
    11469 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    11470 as #26, grid size 250,250,250, pixel 4.3, shown at level 0.0107, step 1,
    11471 values float32 
    11472 Opened MotB.mrc as #27, grid size 250,250,250, pixel 4.3, shown at level
    11473 0.0107, step 1, values float32 
    11474 Opened
    11475 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    11476 as #28, grid size 250,250,250, pixel 4.3, shown at level 0.0107, step 1,
    11477 values float32 
    11478 Log from Fri Jul 25 14:31:14 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    11479 © 2016-2024 Regents of the University of California. All rights reserved. 
    11480 
    11481 > open /Users/shoichi/Desktop/Docking_models_07232025.cxs format session
    11482 
    11483 Opened PflCD.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    11484 0.00703, step 1, values float32 
    11485 Opened Cage-PflAB.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    11486 0.00703, step 1, values float32 
    11487 Opened PflCD.mrc gaussian as #3, grid size 200,200,200, pixel 2.14, shown at
    11488 level 0.00136, step 1, values float32 
    11489 Opened Cage-PflAB.mrc gaussian as #4, grid size 200,200,200, pixel 2.14, shown
    11490 at level 0.00131, step 1, values float32 
    11491 Opened PflC-polished.mrc as #29, grid size 200,200,200, pixel 2.14, shown at
    11492 level 0.00703, step 1, values float32 
    11493 Opened Cage-polished.mrc as #30, grid size 200,200,200, pixel 2.14, shown at
    11494 level 0.00703, step 1, values float32 
    11495 Opened PflC-polished.mrc gaussian as #31, grid size 200,200,200, pixel 2.14,
    11496 shown at level 0.00135, step 1, values float32 
    11497 Opened Cage-polished.mrc gaussian as #32, grid size 200,200,200, pixel 2.14,
    11498 shown at level 0.00135, step 1, values float32 
    11499 Log from Wed Jul 23 17:25:02 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    11500 © 2016-2024 Regents of the University of California. All rights reserved. 
    11501 
    11502 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    11503 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    11504 > refinment/PflCD_Docking_model_Fig3/REDO/Docking_models_07232025.cxs"
    11505 
    11506 Opened PflCD.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    11507 0.00703, step 1, values float32 
    11508 Opened Cage-PflAB.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    11509 0.00703, step 1, values float32 
    11510 Opened PflCD.mrc gaussian as #3, grid size 200,200,200, pixel 2.14, shown at
    11511 level 0.00136, step 1, values float32 
    11512 Opened Cage-PflAB.mrc gaussian as #4, grid size 200,200,200, pixel 2.14, shown
    11513 at level 0.00131, step 1, values float32 
    11514 Log from Wed Jul 23 10:13:39 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    11515 © 2016-2024 Regents of the University of California. All rights reserved. 
    11516 
    11517 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    11518 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    11519 > refinment/PflCD_Docking_model_Fig3/REDO/Docking_models.cxs"
    11520 
    11521 Opened PflCD.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    11522 0.00703, step 1, values float32 
    11523 Opened Cage-PflAB.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    11524 0.00703, step 1, values float32 
    11525 Opened PflCD.mrc gaussian as #3, grid size 200,200,200, pixel 2.14, shown at
    11526 level 0.00136, step 1, values float32 
    11527 Opened Cage-PflAB.mrc gaussian as #4, grid size 200,200,200, pixel 2.14, shown
    11528 at level 0.00131, step 1, values float32 
    11529 Log from Tue Jul 22 22:37:33 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    11530 © 2016-2024 Regents of the University of California. All rights reserved. 
    11531 
    11532 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    11533 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    11534 > review/Updated_Figures/07222025/CJSegment_no-mask/Segment-nomask.cxs"
    11535 
    11536 Opened Rev-CJFlgYPlfAB-2.1A.mrc as #1, grid size 200,200,200, pixel 2.14,
    11537 shown at level 0.00711, step 1, values float32 
    11538 Opened Rev-CJFlgYPlfAB-2.1A_imasked as #3, grid size 200,200,200, pixel 2.14,
    11539 shown at level 0.00711, step 1, values float32 
    11540 Opened Rev-CJFlgYPlfAB-2_imasked as #4, grid size 200,200,200, pixel 2.14,
    11541 shown at level 0.00711, step 1, values float32 
    11542 Opened PflC2.mrc as #5, grid size 200,200,200, pixel 2.14, shown at level
    11543 0.00711, step 1, values float32 
    11544 Opened Rev-CJFlgYPlfAB-2_imasked_imasked as #6, grid size 200,200,200, pixel
    11545 2.14, shown at level 0.00711, step 1, values float32 
    11546 Opened PflC1.mrc as #7, grid size 200,200,200, pixel 2.14, shown at level
    11547 0.00711, step 1, values float32 
    11548 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked as #8, grid size 200,200,200,
    11549 pixel 2.14, shown at level 0.00711, step 1, values float32 
    11550 Opened PflD.mrc as #9, grid size 200,200,200, pixel 2.14, shown at level
    11551 0.00711, step 1, values float32 
    11552 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked as #10, grid size
    11553 200,200,200, pixel 2.14, shown at level 0.00711, step 1, values float32 
    11554 Opened MotBpg.mrc as #11, grid size 200,200,200, pixel 2.14, shown at level
    11555 0.00711, step 1, values float32 
    11556 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked as #12, grid
    11557 size 200,200,200, pixel 2.14, shown at level 0.00711, step 1, values float32 
    11558 Opened PflA-FlgY.mrc as #13, grid size 200,200,200, pixel 2.14, shown at level
    11559 0.00711, step 1, values float32 
    11560 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked as
    11561 #14, grid size 200,200,200, pixel 2.14, shown at level 0.00711, step 1, values
    11562 float32 
    11563 Log from Tue Jul 22 14:40:48 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    11564 © 2016-2024 Regents of the University of California. All rights reserved. 
    11565 
    11566 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    11567 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    11568 > refinment/For-PflCD/For_Cage_PflCD.cxs"
    11569 
    11570 Opened 3xPflAB.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    11571 0.0134, step 1, values float32 
    11572 Opened 3xFliL.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    11573 0.00115, step 1, values float32 
    11574 Opened PflABY.mrc as #6, grid size 200,200,200, pixel 2.14, shown at level
    11575 0.00115, step 1, values float32 
    11576 Opened PflABY.mrc gaussian as #7, grid size 200,200,200, pixel 2.14, shown at
    11577 level 0.00115, step 1, values float32 
    11578 Opened PflABY_out_side-spokes.mrc gaussian as #11, grid size 200,200,200,
    11579 pixel 2.14, shown at level 0.00115, step 1, values float32 
    11580 Opened Single-Spoke-ring.mrc as #14, grid size 200,200,200, pixel 2.14, shown
    11581 at level 0.00115, step 1, values float32 
    11582 Opened Single-Spoke-ring.mrc gaussian as #9, grid size 200,200,200, pixel
    11583 2.14, shown at level 0.000387, step 1, values float32 
    11584 Opened combination map 10 as #15, grid size 96,90,42, pixel 3.33, shown at
    11585 level 0.0635, step 1, values float32 
    11586 Opened MS-ring.mrc as #16, grid size 200,200,200, pixel 2.14, shown at level
    11587 0.00124, step 1, values float32 
    11588 Opened MS-ring.mrc gaussian as #17, grid size 200,200,200, pixel 2.14, shown
    11589 at level 0.00248, step 1, values float32 
    11590 Opened PflC.mrc as #19, grid size 200,200,200, pixel 2.14, shown at level
    11591 0.00752, step 1, values float32 
    11592 Opened PflD.mrc as #20, grid size 200,200,200, pixel 2.14, shown at level
    11593 0.00101, step 1, values float32 
    11594 Opened Cages2.mrc as #21, grid size 200,200,200, pixel 2.14, shown at level
    11595 0.00187, step 1, values float32 
    11596 Opened Rev-CJFlgYPlfAB-msk-2.1A.mrc as #22, grid size 200,200,200, pixel 2.14,
    11597 shown at level 0.00187, step 1, values float32 
    11598 Opened Polished-PflCD.mrc as #29, grid size 200,200,200, pixel 2.14, shown at
    11599 level 0.00187, step 1, values float32 
    11600 Opened Polished-PflCD.mrc gaussian as #26, grid size 200,200,200, pixel 2.14,
    11601 shown at level 0.00102, step 1, values float32 
    11602 Opened Polished_Cage2.mrc as #28, grid size 200,200,200, pixel 2.14, shown at
    11603 level 0.00187, step 1, values float32 
    11604 Opened Polished-IM2.mrc as #32, grid size 200,200,200, pixel 2.14, shown at
    11605 level 0.00146, step 1, values float32 
    11606 Opened Polished_Cage2.mrc gaussian as #30, grid size 200,200,200, pixel 2.14,
    11607 shown at level 0.00184, step 1, values float32 
    11608 Opened Polished-IM2.mrc gaussian as #31, grid size 200,200,200, pixel 2.14,
    11609 shown at level 0.000294, step 1, values float32 
    11610 Opened Polished-PflCD_single.mrc as #33, grid size 200,200,200, pixel 2.14,
    11611 shown at level 0.00102, step 1, values float32 
    11612 Opened Single-Cage.mrc as #34, grid size 200,200,200, pixel 2.14, shown at
    11613 level 0.00184, step 1, values float32 
    11614 Opened Single-Cage-arch.mrc as #35, grid size 200,200,200, pixel 2.14, shown
    11615 at level 0.00184, step 1, values float32 
    11616 Opened combination map 10 as #39, grid size 42,39,48, pixel 3.33, shown at
    11617 level 0.0506, step 1, values float32 
    11618 Opened combination map 10 as #42, grid size 38,53,56, pixel 3.33, shown at
    11619 level 0.0458, step 1, values float32 
    11620 Log from Sat Jul 12 20:19:26 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    11621 © 2016-2024 Regents of the University of California. All rights reserved. 
    11622 
    11623 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    11624 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    11625 > refinment/For-PflCD/For_PflCD.cxs"
    11626 
    11627 Opened 3xPflAB.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    11628 0.0134, step 1, values float32 
    11629 Opened 3xFliL.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    11630 0.00115, step 1, values float32 
    11631 Opened PflABY.mrc as #6, grid size 200,200,200, pixel 2.14, shown at level
    11632 0.00115, step 1, values float32 
    11633 Opened PflABY.mrc gaussian as #7, grid size 200,200,200, pixel 2.14, shown at
    11634 level 0.00115, step 1, values float32 
    11635 Opened PflABY_out_side-spokes.mrc gaussian as #11, grid size 200,200,200,
    11636 pixel 2.14, shown at level 0.00115, step 1, values float32 
    11637 Opened Single-Spoke-ring.mrc as #14, grid size 200,200,200, pixel 2.14, shown
    11638 at level 0.00115, step 1, values float32 
    11639 Opened Single-Spoke-ring.mrc gaussian as #9, grid size 200,200,200, pixel
    11640 2.14, shown at level 0.000387, step 1, values float32 
    11641 Opened combination map 10 as #15, grid size 96,90,42, pixel 3.33, shown at
    11642 level 0.0635, step 1, values float32 
    11643 Opened MS-ring.mrc as #16, grid size 200,200,200, pixel 2.14, shown at level
    11644 0.00124, step 1, values float32 
    11645 Opened MS-ring.mrc gaussian as #17, grid size 200,200,200, pixel 2.14, shown
    11646 at level 0.00248, step 1, values float32 
    11647 Opened PflC.mrc as #19, grid size 200,200,200, pixel 2.14, shown at level
    11648 0.00752, step 1, values float32 
    11649 Opened PflD.mrc as #20, grid size 200,200,200, pixel 2.14, shown at level
    11650 0.00101, step 1, values float32 
    11651 Opened Cages2.mrc as #21, grid size 200,200,200, pixel 2.14, shown at level
    11652 0.00187, step 1, values float32 
    11653 Opened Rev-CJFlgYPlfAB-msk-2.1A.mrc as #22, grid size 200,200,200, pixel 2.14,
    11654 shown at level 0.00187, step 1, values float32 
    11655 Opened Polished-PflCD.mrc as #29, grid size 200,200,200, pixel 2.14, shown at
    11656 level 0.00187, step 1, values float32 
    11657 Opened Polished-PflCD.mrc gaussian as #26, grid size 200,200,200, pixel 2.14,
    11658 shown at level 0.00102, step 1, values float32 
    11659 Opened Polished_Cage2.mrc as #28, grid size 200,200,200, pixel 2.14, shown at
    11660 level 0.00187, step 1, values float32 
    11661 Opened Polished-IM2.mrc as #32, grid size 200,200,200, pixel 2.14, shown at
    11662 level 0.00146, step 1, values float32 
    11663 Opened Polished_Cage2.mrc gaussian as #30, grid size 200,200,200, pixel 2.14,
    11664 shown at level 0.00184, step 1, values float32 
    11665 Opened Polished-IM2.mrc gaussian as #31, grid size 200,200,200, pixel 2.14,
    11666 shown at level 0.000294, step 1, values float32 
    11667 Opened Polished-PflCD_single.mrc as #33, grid size 200,200,200, pixel 2.14,
    11668 shown at level 0.00102, step 1, values float32 
    11669 Opened Single-Cage.mrc as #34, grid size 200,200,200, pixel 2.14, shown at
    11670 level 0.00184, step 1, values float32 
    11671 Opened Single-Cage-arch.mrc as #35, grid size 200,200,200, pixel 2.14, shown
    11672 at level 0.00184, step 1, values float32 
    11673 Log from Fri Jul 11 22:22:46 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    11674 © 2016-2024 Regents of the University of California. All rights reserved. 
    11675 
    11676 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    11677 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    11678 > refinment/For-PflCD/PflCD.cxs"
    11679 
    11680 Opened 3xPflAB.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    11681 0.0134, step 1, values float32 
    11682 Opened 3xFliL.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    11683 0.00115, step 1, values float32 
    11684 Opened PflABY.mrc as #6, grid size 200,200,200, pixel 2.14, shown at level
    11685 0.00115, step 1, values float32 
    11686 Opened PflABY.mrc gaussian as #7, grid size 200,200,200, pixel 2.14, shown at
    11687 level 0.00115, step 1, values float32 
    11688 Opened PflABY_out_side-spokes.mrc gaussian as #11, grid size 200,200,200,
    11689 pixel 2.14, shown at level 0.00115, step 1, values float32 
    11690 Opened Single-Spoke-ring.mrc as #14, grid size 200,200,200, pixel 2.14, shown
    11691 at level 0.00115, step 1, values float32 
    11692 Opened Single-Spoke-ring.mrc gaussian as #9, grid size 200,200,200, pixel
    11693 2.14, shown at level 0.000387, step 1, values float32 
    11694 Opened combination map 10 as #15, grid size 96,90,42, pixel 3.33, shown at
    11695 level 0.0635, step 1, values float32 
    11696 Opened MS-ring.mrc as #16, grid size 200,200,200, pixel 2.14, shown at level
    11697 0.00124, step 1, values float32 
    11698 Opened MS-ring.mrc gaussian as #17, grid size 200,200,200, pixel 2.14, shown
    11699 at level 0.00248, step 1, values float32 
    11700 Opened PflC.mrc as #19, grid size 200,200,200, pixel 2.14, shown at level
    11701 0.00752, step 1, values float32 
    11702 Opened PflD.mrc as #20, grid size 200,200,200, pixel 2.14, shown at level
    11703 0.00101, step 1, values float32 
    11704 Opened Cages2.mrc as #21, grid size 200,200,200, pixel 2.14, shown at level
    11705 0.00187, step 1, values float32 
    11706 Opened Rev-CJFlgYPlfAB-msk-2.1A.mrc as #22, grid size 200,200,200, pixel 2.14,
    11707 shown at level 0.00187, step 1, values float32 
    11708 Log from Fri Jul 11 20:48:14 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    11709 © 2016-2024 Regents of the University of California. All rights reserved. 
    11710 
    11711 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    11712 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    11713 > refinment/For-PflCD/For-PflD_PflC.cxs"
    11714 
    11715 Opened 3xPflAB.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    11716 0.0134, step 1, values float32 
    11717 Opened 3xFliL.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    11718 0.00115, step 1, values float32 
    11719 Opened PflABY.mrc as #6, grid size 200,200,200, pixel 2.14, shown at level
    11720 0.00115, step 1, values float32 
    11721 Opened PflABY.mrc gaussian as #7, grid size 200,200,200, pixel 2.14, shown at
    11722 level 0.00115, step 1, values float32 
    11723 Opened PflABY_out_side-spokes.mrc gaussian as #11, grid size 200,200,200,
    11724 pixel 2.14, shown at level 0.00115, step 1, values float32 
    11725 Opened Single-Spoke-ring.mrc as #14, grid size 200,200,200, pixel 2.14, shown
    11726 at level 0.00115, step 1, values float32 
    11727 Opened Single-Spoke-ring.mrc gaussian as #9, grid size 200,200,200, pixel
    11728 2.14, shown at level 0.000387, step 1, values float32 
    11729 Opened combination map 10 as #15, grid size 96,90,42, pixel 3.33, shown at
    11730 level 0.0635, step 1, values float32 
    11731 Opened MS-ring.mrc as #16, grid size 200,200,200, pixel 2.14, shown at level
    11732 0.00124, step 1, values float32 
    11733 Opened MS-ring.mrc gaussian as #17, grid size 200,200,200, pixel 2.14, shown
    11734 at level 0.00248, step 1, values float32 
    11735 Opened PflC.mrc as #19, grid size 200,200,200, pixel 2.14, shown at level
    11736 0.00752, step 1, values float32 
    11737 Opened PflD.mrc as #20, grid size 200,200,200, pixel 2.14, shown at level
    11738 0.00101, step 1, values float32 
    11739 Opened Cages2.mrc as #21, grid size 200,200,200, pixel 2.14, shown at level
    11740 0.00187, step 1, values float32 
    11741 Opened Rev-CJFlgYPlfAB-msk-2.1A.mrc as #22, grid size 200,200,200, pixel 2.14,
    11742 shown at level 0.00187, step 1, values float32 
    11743 Log from Fri Jul 11 17:08:26 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    11744 © 2016-2024 Regents of the University of California. All rights reserved. 
    11745 
    11746 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    11747 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    11748 > refinment/For-Chimera-PflAB/Resegment/Part3/Fitting_PflABY-JMB_07112025.cxs"
    11749 
    11750 Opened 3xPflAB.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    11751 0.0134, step 1, values float32 
    11752 Opened 3xFliL.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    11753 0.00115, step 1, values float32 
    11754 Opened PflABY.mrc as #6, grid size 200,200,200, pixel 2.14, shown at level
    11755 0.00115, step 1, values float32 
    11756 Opened PflABY.mrc gaussian as #7, grid size 200,200,200, pixel 2.14, shown at
    11757 level 0.00115, step 1, values float32 
    11758 Opened PflABY_out_side-spokes.mrc gaussian as #11, grid size 200,200,200,
    11759 pixel 2.14, shown at level 0.00115, step 1, values float32 
    11760 Opened Single-Spoke-ring.mrc as #14, grid size 200,200,200, pixel 2.14, shown
    11761 at level 0.00115, step 1, values float32 
    11762 Opened Single-Spoke-ring.mrc gaussian as #9, grid size 200,200,200, pixel
    11763 2.14, shown at level 0.000387, step 1, values float32 
    11764 Opened combination map 10 as #15, grid size 96,90,42, pixel 3.33, shown at
    11765 level 0.0635, step 1, values float32 
    11766 Log from Fri Jul 11 12:46:52 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    11767 © 2016-2024 Regents of the University of California. All rights reserved. 
    11768 
    11769 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    11770 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    11771 > refinment/For-Chimera-PflAB/Resegment/Docking_Jack_model.cxs"
    11772 
    11773 Opened 3xPflAB.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    11774 0.0134, step 1, values float32 
    11775 Opened 3xFliL.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    11776 0.00115, step 1, values float32 
    11777 Log from Thu Jul 10 22:06:04 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    11778 © 2016-2024 Regents of the University of California. All rights reserved. 
    11779 
    11780 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    11781 > files/C.jejuni/2nd_paper/For-2nd-manuscript/Start_Aug_2024/Local-ref-
    11782 > PflAB/Develop-model-Figure.cxs"
    11783 
    11784 Opened IM.mrc as #1.1, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    11785 level 0.0246, step 1, values float32 
    11786 Opened Cyt-components.mrc as #1.2, grid size 220,250,200, pixel
    11787 2.15,2.15,2.15, shown at level 0.0159, step 1, values float32 
    11788 Opened FliL.mrc as #1.3, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    11789 level 0.0029, step 1, values float32 
    11790 Opened PflB-cage.mrc as #1.4, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11791 shown at level 0.0029, step 1, values float32 
    11792 Opened Cage.mrc as #1.5, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    11793 level 0.0029, step 1, values float32 
    11794 Opened FlgY-PflA.mrc as #1.6, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11795 shown at level 0.0029, step 1, values float32 
    11796 Opened MS-ring.mrc as #1.7, grid size 220,250,200, pixel 2.15,2.15,2.15, shown
    11797 at level 0.0029, step 1, values float32 
    11798 Opened Artifact3.mrc as #1.8, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11799 shown at level 0.0029, step 1, values float32 
    11800 Opened MotBpg.mrc as #1.9, grid size 220,250,200, pixel 2.15,2.15,2.15, shown
    11801 at level 0.0029, step 1, values float32 
    11802 Opened Artifacts2.mrc as #1.10, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11803 shown at level 0.0029, step 1, values float32 
    11804 Opened PflC-PflD.mrc as #1.11, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11805 shown at level 0.0029, step 1, values float32 
    11806 Opened Basal-Disk.mrc as #1.12, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11807 shown at level 0.0029, step 1, values float32 
    11808 Opened OM.mrc as #1.13, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    11809 level 0.0029, step 1, values float32 
    11810 Opened LP-ring.mrc as #1.14, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11811 shown at level 0.0029, step 1, values float32 
    11812 Opened Artifact1.mrc as #1.15, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11813 shown at level 0.0029, step 1, values float32 
    11814 Opened Rod.mrc as #1.16, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    11815 level 0.0029, step 1, values float32 
    11816 Opened IM.mrc gaussian as #2, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11817 shown at level 0.0029, step 1, values float32 
    11818 Opened FliL.mrc gaussian as #4, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11819 shown at level 0.0029, step 1, values float32 
    11820 Opened PflB-cage.mrc gaussian as #5, grid size 220,250,200, pixel
    11821 2.15,2.15,2.15, shown at level 0.0029, step 1, values float32 
    11822 Opened Cage.mrc gaussian as #6, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11823 shown at level 0.0029, step 1, values float32 
    11824 Opened FlgY-PflA.mrc gaussian as #7, grid size 220,250,200, pixel
    11825 2.15,2.15,2.15, shown at level 0.0216, step 1, values float32 
    11826 Opened MS-ring.mrc gaussian as #8, grid size 220,250,200, pixel
    11827 2.15,2.15,2.15, shown at level 0.0029, step 1, values float32 
    11828 Opened MotBpg.mrc gaussian as #10, grid size 220,250,200, pixel
    11829 2.15,2.15,2.15, shown at level 0.0029, step 1, values float32 
    11830 Opened PflC-PflD.mrc gaussian as #12, grid size 220,250,200, pixel
    11831 2.15,2.15,2.15, shown at level 0.0029, step 1, values float32 
    11832 Opened Basal-Disk.mrc gaussian as #13, grid size 220,250,200, pixel
    11833 2.15,2.15,2.15, shown at level 0.015, step 1, values float32 
    11834 Opened LP-ring.mrc gaussian as #15, grid size 220,250,200, pixel
    11835 2.15,2.15,2.15, shown at level 0.0029, step 1, values float32 
    11836 Opened Rod.mrc gaussian as #17, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11837 shown at level 0.0029, step 1, values float32 
    11838 Opened 4x-FlgY-PflA.mrc as #23, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11839 shown at level 0.0029, step 1, values float32 
    11840 Opened 4x-FlgY-PflA.mrc gaussian as #32, grid size 220,250,200, pixel
    11841 2.15,2.15,2.15, shown at level 0.00608, step 1, values float32 
    11842 Opened IM.mrc gaussian as #24, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11843 shown at level 0.00625, step 1, values float32 
    11844 Opened 3xMotBpg.mrc gaussian as #21, grid size 220,250,200, pixel
    11845 2.15,2.15,2.15, shown at level 0.000626, step 1, values float32 
    11846 Log from Sat Aug 24 21:36:37 2024UCSF ChimeraX version: 1.8 (2024-06-10) 
    11847 © 2016-2024 Regents of the University of California. All rights reserved. 
    11848 
    11849 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11850 > manuscript/Start_Aug_2024/Local-ref-PflAB/Develop-model-Figure.cxs
    11851 
    11852 Opened IM.mrc as #1.1, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    11853 level 0.0246, step 1, values float32 
    11854 Opened Cyt-components.mrc as #1.2, grid size 220,250,200, pixel
    11855 2.15,2.15,2.15, shown at level 0.0159, step 1, values float32 
    11856 Opened FliL.mrc as #1.3, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    11857 level 0.0029, step 1, values float32 
    11858 Opened PflB-cage.mrc as #1.4, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11859 shown at level 0.0029, step 1, values float32 
    11860 Opened Cage.mrc as #1.5, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    11861 level 0.0029, step 1, values float32 
    11862 Opened FlgY-PflA.mrc as #1.6, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11863 shown at level 0.0029, step 1, values float32 
    11864 Opened MS-ring.mrc as #1.7, grid size 220,250,200, pixel 2.15,2.15,2.15, shown
    11865 at level 0.0029, step 1, values float32 
    11866 Opened Artifact3.mrc as #1.8, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11867 shown at level 0.0029, step 1, values float32 
    11868 Opened MotBpg.mrc as #1.9, grid size 220,250,200, pixel 2.15,2.15,2.15, shown
    11869 at level 0.0029, step 1, values float32 
    11870 Opened Artifacts2.mrc as #1.10, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11871 shown at level 0.0029, step 1, values float32 
    11872 Opened PflC-PflD.mrc as #1.11, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11873 shown at level 0.0029, step 1, values float32 
    11874 Opened Basal-Disk.mrc as #1.12, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11875 shown at level 0.0029, step 1, values float32 
    11876 Opened OM.mrc as #1.13, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    11877 level 0.0029, step 1, values float32 
    11878 Opened LP-ring.mrc as #1.14, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11879 shown at level 0.0029, step 1, values float32 
    11880 Opened Artifact1.mrc as #1.15, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11881 shown at level 0.0029, step 1, values float32 
    11882 Opened Rod.mrc as #1.16, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    11883 level 0.0029, step 1, values float32 
    11884 Opened IM.mrc gaussian as #2, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11885 shown at level 0.0029, step 1, values float32 
    11886 Opened FliL.mrc gaussian as #4, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11887 shown at level 0.0029, step 1, values float32 
    11888 Opened PflB-cage.mrc gaussian as #5, grid size 220,250,200, pixel
    11889 2.15,2.15,2.15, shown at level 0.0029, step 1, values float32 
    11890 Opened Cage.mrc gaussian as #6, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11891 shown at level 0.0029, step 1, values float32 
    11892 Opened FlgY-PflA.mrc gaussian as #7, grid size 220,250,200, pixel
    11893 2.15,2.15,2.15, shown at level 0.0216, step 1, values float32 
    11894 Opened MS-ring.mrc gaussian as #8, grid size 220,250,200, pixel
    11895 2.15,2.15,2.15, shown at level 0.0029, step 1, values float32 
    11896 Opened MotBpg.mrc gaussian as #10, grid size 220,250,200, pixel
    11897 2.15,2.15,2.15, shown at level 0.0029, step 1, values float32 
    11898 Opened PflC-PflD.mrc gaussian as #12, grid size 220,250,200, pixel
    11899 2.15,2.15,2.15, shown at level 0.0029, step 1, values float32 
    11900 Opened Basal-Disk.mrc gaussian as #13, grid size 220,250,200, pixel
    11901 2.15,2.15,2.15, shown at level 0.015, step 1, values float32 
    11902 Opened LP-ring.mrc gaussian as #15, grid size 220,250,200, pixel
    11903 2.15,2.15,2.15, shown at level 0.0029, step 1, values float32 
    11904 Opened Rod.mrc gaussian as #17, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11905 shown at level 0.0029, step 1, values float32 
    11906 Log from Sat Aug 24 18:41:04 2024 Startup Messages 
    11907 --- 
    11908 note | available bundle cache has not been initialized yet 
    11909  
    11910 UCSF ChimeraX version: 1.8 (2024-06-10) 
    11911 © 2016-2024 Regents of the University of California. All rights reserved. 
    11912 How to cite UCSF ChimeraX 
    11913 
    11914 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11915 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Segments/IM.mrc
    11916 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11917 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-
    11918 > chimera/cyc3/Segments/Artifacts-cyt.mrc
    11919 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11920 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Segments/PflB-
    11921 > cage.mrc /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11922 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-
    11923 > chimera/cyc3/Segments/FliLrings.mrc
    11924 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11925 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Segments/Cage.mrc
    11926 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11927 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Segments/FlgY-
    11928 > PflA.mrc /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11929 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-
    11930 > chimera/cyc3/Segments/MotBpg.mrc
    11931 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11932 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Segments/MS-
    11933 > ring.mrc /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11934 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-
    11935 > chimera/cyc3/Segments/Artifacts.mrc
    11936 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11937 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Segments/Rod.mrc
    11938 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11939 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Segments/LP-
    11940 > ring.mrc /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11941 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-
    11942 > chimera/cyc3/Segments/PflCD.mrc
    11943 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11944 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Segments/Basal-
    11945 > disk.mrc
    11946 
    11947 Opened IM.mrc as #1.1, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    11948 level 0.0246, step 1, values float32 
    11949 Opened Artifacts-cyt.mrc as #1.2, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11950 shown at level 0.0215, step 1, values float32 
    11951 Opened PflB-cage.mrc as #1.3, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11952 shown at level 0.0223, step 1, values float32 
    11953 Opened FliLrings.mrc as #1.4, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11954 shown at level 0.0214, step 1, values float32 
    11955 Opened Cage.mrc as #1.5, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    11956 level 0.0213, step 1, values float32 
    11957 Opened FlgY-PflA.mrc as #1.6, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11958 shown at level 0.0274, step 1, values float32 
    11959 Opened MotBpg.mrc as #1.7, grid size 220,250,200, pixel 2.15,2.15,2.15, shown
    11960 at level 0.0214, step 1, values float32 
    11961 Opened MS-ring.mrc as #1.8, grid size 220,250,200, pixel 2.15,2.15,2.15, shown
    11962 at level 0.0215, step 1, values float32 
    11963 Opened Artifacts.mrc as #1.9, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11964 shown at level 0.0212, step 1, values float32 
    11965 Opened Rod.mrc as #1.10, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    11966 level 0.0213, step 1, values float32 
    11967 Opened LP-ring.mrc as #1.11, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11968 shown at level 0.0218, step 1, values float32 
    11969 Opened PflCD.mrc as #1.12, grid size 220,250,200, pixel 2.15,2.15,2.15, shown
    11970 at level 0.0454, step 1, values float32 
    11971 Opened Basal-disk.mrc as #1.13, grid size 220,250,200, pixel 2.15,2.15,2.15,
    11972 shown at level 0.0247, step 1, values float32 
    11973 
    11974 > select add #1.2
    11975 
    11976 2 models selected 
    11977 
    11978 > select subtract #1.2
    11979 
    11980 Nothing selected 
    11981 
    11982 > hide #!1.2 models
    11983 
    11984 > hide #!1.9 models
    11985 
    11986 > volume #1.1 level 0.02218
    11987 
    11988 > volume #1.2 level 0.0222
    11989 
    11990 > volume #1.3 level 0.0222
    11991 
    11992 > volume #1.4 level 0.0222
    11993 
    11994 > volume #1.5 level 0.0222
    11995 
    11996 > volume #1.6 level 0.0222
    11997 
    11998 > volume #1.7 level 0.0222
    11999 
    12000 > volume #1.8 level 0.0222
    12001 
    12002 > volume #1.9 level 0.0222
    12003 
    12004 > volume #1.10 level 0.0222
    12005 
    12006 > volume #1.13 level 0.0222
    12007 
    12008 > volume gaussian #1 sDev 3
    12009 
    12010 Opened IM.mrc gaussian as #2, grid size 220,250,200, pixel 2.15,2.15,2.15,
    12011 shown at step 1, values float32 
    12012 Opened Artifacts-cyt.mrc gaussian as #3, grid size 220,250,200, pixel
    12013 2.15,2.15,2.15, shown at step 1, values float32 
    12014 Opened PflB-cage.mrc gaussian as #4, grid size 220,250,200, pixel
    12015 2.15,2.15,2.15, shown at step 1, values float32 
    12016 Opened FliLrings.mrc gaussian as #5, grid size 220,250,200, pixel
    12017 2.15,2.15,2.15, shown at step 1, values float32 
    12018 Opened Cage.mrc gaussian as #6, grid size 220,250,200, pixel 2.15,2.15,2.15,
    12019 shown at step 1, values float32 
    12020 Opened FlgY-PflA.mrc gaussian as #7, grid size 220,250,200, pixel
    12021 2.15,2.15,2.15, shown at step 1, values float32 
    12022 Opened MotBpg.mrc gaussian as #8, grid size 220,250,200, pixel 2.15,2.15,2.15,
    12023 shown at step 1, values float32 
    12024 Opened MS-ring.mrc gaussian as #9, grid size 220,250,200, pixel
    12025 2.15,2.15,2.15, shown at step 1, values float32 
    12026 Opened Artifacts.mrc gaussian as #10, grid size 220,250,200, pixel
    12027 2.15,2.15,2.15, shown at step 1, values float32 
    12028 Opened Rod.mrc gaussian as #11, grid size 220,250,200, pixel 2.15,2.15,2.15,
    12029 shown at step 1, values float32 
    12030 Opened LP-ring.mrc gaussian as #12, grid size 220,250,200, pixel
    12031 2.15,2.15,2.15, shown at step 1, values float32 
    12032 Opened PflCD.mrc gaussian as #13, grid size 220,250,200, pixel 2.15,2.15,2.15,
    12033 shown at step 1, values float32 
    12034 Opened Basal-disk.mrc gaussian as #14, grid size 220,250,200, pixel
    12035 2.15,2.15,2.15, shown at step 1, values float32 
    12036 
    12037 Cell requested for row 1 is out of bounds for table with 27 rows! Resizing
    12038 table model. 
    12039 
    12040 > close #2-14
    12041 
    12042 > show #!1.1 models
    12043 
    12044 > show #!1.2 models
    12045 
    12046 > show #!1.3 models
    12047 
    12048 > show #!1.4 models
    12049 
    12050 > show #!1.6 models
    12051 
    12052 > show #!1.7 models
    12053 
    12054 > show #!1.5 models
    12055 
    12056 > volume gaussian #1 sDev 1.5
    12057 
    12058 Opened IM.mrc gaussian as #2, grid size 220,250,200, pixel 2.15,2.15,2.15,
    12059 shown at step 1, values float32 
    12060 Opened Artifacts-cyt.mrc gaussian as #3, grid size 220,250,200, pixel
    12061 2.15,2.15,2.15, shown at step 1, values float32 
    12062 Opened PflB-cage.mrc gaussian as #4, grid size 220,250,200, pixel
    12063 2.15,2.15,2.15, shown at step 1, values float32 
    12064 Opened FliLrings.mrc gaussian as #5, grid size 220,250,200, pixel
    12065 2.15,2.15,2.15, shown at step 1, values float32 
    12066 Opened Cage.mrc gaussian as #6, grid size 220,250,200, pixel 2.15,2.15,2.15,
    12067 shown at step 1, values float32 
    12068 Opened FlgY-PflA.mrc gaussian as #7, grid size 220,250,200, pixel
    12069 2.15,2.15,2.15, shown at step 1, values float32 
    12070 Opened MotBpg.mrc gaussian as #8, grid size 220,250,200, pixel 2.15,2.15,2.15,
    12071 shown at step 1, values float32 
    12072 Opened MS-ring.mrc gaussian as #9, grid size 220,250,200, pixel
    12073 2.15,2.15,2.15, shown at step 1, values float32 
    12074 Opened Artifacts.mrc gaussian as #10, grid size 220,250,200, pixel
    12075 2.15,2.15,2.15, shown at step 1, values float32 
    12076 Opened Rod.mrc gaussian as #11, grid size 220,250,200, pixel 2.15,2.15,2.15,
    12077 shown at step 1, values float32 
    12078 Opened LP-ring.mrc gaussian as #12, grid size 220,250,200, pixel
    12079 2.15,2.15,2.15, shown at step 1, values float32 
    12080 Opened PflCD.mrc gaussian as #13, grid size 220,250,200, pixel 2.15,2.15,2.15,
    12081 shown at step 1, values float32 
    12082 Opened Basal-disk.mrc gaussian as #14, grid size 220,250,200, pixel
    12083 2.15,2.15,2.15, shown at step 1, values float32 
    12084 
    12085 Window position QRect(1940,817 575x728) outside any known screen, using
    12086 primary screen 
    12087 
    12088 > hide #!3 models
    12089 
    12090 > hide #!4 models
    12091 
    12092 > hide #!5 models
    12093 
    12094 > hide #!6 models
    12095 
    12096 > hide #!7 models
    12097 
    12098 > hide #!8 models
    12099 
    12100 > hide #!9 models
    12101 
    12102 > hide #!10 models
    12103 
    12104 > hide #!11 models
    12105 
    12106 > hide #!12 models
    12107 
    12108 > hide #!13 models
    12109 
    12110 > hide #!14 models
    12111 
    12112 > surface dust #2 size 12.6
    12113 
    12114 > show #!3 models
    12115 
    12116 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    12117 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/Test-model-local.cxs
    12118 > includeMaps true
    12119 
    12120 > close session
    12121 
    12122 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    12123 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Rev-CjpflAB-
    12124 > mask-L0.2.mrc
    12125 
    12126 Opened Rev-CjpflAB-mask-L0.2.mrc as #1, grid size 220,250,200, pixel
    12127 2.15,2.15,2.15, shown at level 0.0603, step 1, values float32 
    12128 
    12129 > volume #1 level 0.01305
    12130 
    12131 > volume #1 level 0.009239
    12132 
    12133 > volume #1 level 0.007334
    12134 
    12135 > volume #1 level 0.003524
    12136 
    12137 > ui tool show "Segment Map"
    12138 
    12139 > volume #1 level 0.003143
    12140 
    12141 Segmenting Rev-CjpflAB-mask-L0.2.mrc, density threshold 0.003143 
    12142 Showing 581 region surfaces 
    12143 31797 watershed regions, grouped to 581 regions 
    12144 Showing Rev-CjpflAB-mask-L0.2.seg - 581 regions, 581 surfaces 
    12145 
    12146 > select #2.419
    12147 
    12148 1 model selected 
    12149 
    12150 > select add #2.456
    12151 
    12152 2 models selected 
    12153 
    12154 > select add #2.18
    12155 
    12156 3 models selected 
    12157 
    12158 > select add #2.378
    12159 
    12160 4 models selected 
    12161 
    12162 > hide #!1 models
    12163 
    12164 > select add #2.439
    12165 
    12166 5 models selected 
    12167 
    12168 > select add #2.1
    12169 
    12170 6 models selected 
    12171 
    12172 > select add #2.16
    12173 
    12174 7 models selected 
    12175 
    12176 > select add #2.29
    12177 
    12178 8 models selected 
    12179 
    12180 > select add #2.404
    12181 
    12182 9 models selected 
    12183 Grouped 9 regions 
    12184 
    12185 > select #2.56
    12186 
    12187 1 model selected 
    12188 Ungrouped to 2 regions 
    12189 
    12190 > select #2.18
    12191 
    12192 1 model selected 
    12193 Ungrouped to 3 regions 
    12194 
    12195 > select #2.29
    12196 
    12197 1 model selected 
    12198 
    12199 > select clear
    12200 
    12201 > select #2.29
    12202 
    12203 1 model selected 
    12204 Showing 576 region surfaces 
    12205 
    12206 > select add #2.1
    12207 
    12208 2 models selected 
    12209 
    12210 The cached device pixel ratio value was stale on window expose. Please file a
    12211 QTBUG which explains how to reproduce. 
    12212 
    12213 Grouped 2 regions 
    12214 
    12215 > select #2.87
    12216 
    12217 1 model selected 
    12218 
    12219 > select clear
    12220 
    12221 > select #2.286
    12222 
    12223 1 model selected 
    12224 
    12225 > select #2.87
    12226 
    12227 1 model selected 
    12228 Ungrouped to 10 regions 
    12229 
    12230 > select clear
    12231 
    12232 > select #2.419
    12233 
    12234 1 model selected 
    12235 
    12236 > select add #2.1
    12237 
    12238 2 models selected 
    12239 Opened Rev-CjpflAB-mask-L0.2_imasked as #3, grid size 220,250,200, pixel
    12240 2.15,2.15,2.15, shown at step 1, values float32 
    12241 
    12242 The cached device pixel ratio value was stale on window expose. Please file a
    12243 QTBUG which explains how to reproduce. 
    12244 
    12245 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    12246 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    12247 > segment_Aug2420204/Rod.mrc models #3
    12248 
    12249 Opened Rev-CjpflAB-mask-L0.2_imasked as #4, grid size 220,250,200, pixel
    12250 2.15,2.15,2.15, shown at step 1, values float32 
    12251 
    12252 The cached device pixel ratio value was stale on window expose. Please file a
    12253 QTBUG which explains how to reproduce. 
    12254 
    12255 Segmenting Rev-CjpflAB-mask-L0.2_imasked, density threshold 0.003143 
    12256 Showing 572 region surfaces 
    12257 30650 watershed regions, grouped to 572 regions 
    12258 Showing Rev-CjpflAB-mask-L0.seg - 572 regions, 572 surfaces 
    12259 
    12260 > hide #!4 models
    12261 
    12262 > hide #!3 models
    12263 
    12264 > show #!3 models
    12265 
    12266 > select add #2.13
    12267 
    12268 1 model selected 
    12269 
    12270 > select add #2.5
    12271 
    12272 2 models selected 
    12273 
    12274 > select add #2.3
    12275 
    12276 3 models selected 
    12277 
    12278 > select add #2.27
    12279 
    12280 4 models selected 
    12281 
    12282 > select clear
    12283 
    12284 > select #2.22
    12285 
    12286 1 model selected 
    12287 
    12288 > select add #2.274
    12289 
    12290 2 models selected 
    12291 
    12292 > select add #2.420
    12293 
    12294 3 models selected 
    12295 
    12296 > select add #2.350
    12297 
    12298 4 models selected 
    12299 
    12300 > select add #2.341
    12301 
    12302 5 models selected 
    12303 
    12304 > select add #2.419
    12305 
    12306 6 models selected 
    12307 
    12308 > select add #2.186
    12309 
    12310 7 models selected 
    12311 
    12312 > select add #2.323
    12313 
    12314 8 models selected 
    12315 
    12316 > select add #2.162
    12317 
    12318 9 models selected 
    12319 
    12320 > select add #2.450
    12321 
    12322 10 models selected 
    12323 
    12324 > select add #2.79
    12325 
    12326 11 models selected 
    12327 
    12328 > select add #2.356
    12329 
    12330 12 models selected 
    12331 Grouped 12 regions 
    12332 
    12333 > hide #!3 models
    12334 
    12335 Opened Rev-CjpflAB-mask-L0_imasked as #5, grid size 220,250,200, pixel
    12336 2.15,2.15,2.15, shown at step 1, values float32 
    12337 
    12338 The cached device pixel ratio value was stale on window expose. Please file a
    12339 QTBUG which explains how to reproduce. 
    12340 
    12341 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    12342 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    12343 > segment_Aug2420204/Artifact1.mrc models #5
    12344 
    12345 Opened Rev-CjpflAB-mask-L0_imasked as #6, grid size 220,250,200, pixel
    12346 2.15,2.15,2.15, shown at step 1, values float32 
    12347 Segmenting Rev-CjpflAB-mask-L0_imasked, density threshold 0.003143 
    12348 Showing 559 region surfaces 
    12349 29950 watershed regions, grouped to 559 regions 
    12350 Showing Rev-CjpflAB-mask-L0_imasked.seg - 559 regions, 559 surfaces 
    12351 
    12352 > select #2.5
    12353 
    12354 1 model selected 
    12355 
    12356 > select add #2.92
    12357 
    12358 2 models selected 
    12359 
    12360 > select add #2.138
    12361 
    12362 3 models selected 
    12363 
    12364 > select add #2.3
    12365 
    12366 4 models selected 
    12367 
    12368 > select add #2.26
    12369 
    12370 5 models selected 
    12371 
    12372 > select add #2.65
    12373 
    12374 6 models selected 
    12375 
    12376 > select add #2.76
    12377 
    12378 7 models selected 
    12379 
    12380 > select add #2.272
    12381 
    12382 8 models selected 
    12383 
    12384 > select add #2.13
    12385 
    12386 9 models selected 
    12387 
    12388 > hide #!5 models
    12389 
    12390 > hide #!6 models
    12391 
    12392 Grouped 9 regions 
    12393 Opened Rev-CjpflAB-mask-L0_imasked_imasked as #7, grid size 220,250,200, pixel
    12394 2.15,2.15,2.15, shown at step 1, values float32 
    12395 
    12396 The cached device pixel ratio value was stale on window expose. Please file a
    12397 QTBUG which explains how to reproduce. 
    12398 
    12399 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    12400 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    12401 > segment_Aug2420204/LP-ring.mrc models #7
    12402 
    12403 Opened Rev-CjpflAB-mask-L0_imasked_imasked as #8, grid size 220,250,200, pixel
    12404 2.15,2.15,2.15, shown at step 1, values float32 
    12405 Segmenting Rev-CjpflAB-mask-L0_imasked_imasked, density threshold 0.003143 
    12406 Showing 550 region surfaces 
    12407 28997 watershed regions, grouped to 550 regions 
    12408 Showing Rev-CjpflAB-mask-L0_imasked_imasked.seg - 550 regions, 550 surfaces 
    12409 
    12410 > hide #!7 models
    12411 
    12412 > hide #!8 models
    12413 
    12414 > select #2.31
    12415 
    12416 1 model selected 
    12417 
    12418 > select add #2.422
    12419 
    12420 2 models selected 
    12421 
    12422 > select add #2.162
    12423 
    12424 3 models selected 
    12425 
    12426 > select add #2.149
    12427 
    12428 4 models selected 
    12429 
    12430 > select add #2.307
    12431 
    12432 5 models selected 
    12433 
    12434 > select add #2.358
    12435 
    12436 6 models selected 
    12437 
    12438 > select add #2.43
    12439 
    12440 7 models selected 
    12441 
    12442 > select add #2.360
    12443 
    12444 8 models selected 
    12445 
    12446 > select add #2.323
    12447 
    12448 9 models selected 
    12449 
    12450 > select add #2.401
    12451 
    12452 10 models selected 
    12453 
    12454 > select add #2.467
    12455 
    12456 11 models selected 
    12457 
    12458 > select add #2.409
    12459 
    12460 12 models selected 
    12461 
    12462 > select add #2.42
    12463 
    12464 13 models selected 
    12465 
    12466 > select add #2.429
    12467 
    12468 14 models selected 
    12469 
    12470 > select add #2.475
    12471 
    12472 15 models selected 
    12473 
    12474 > select subtract #2.42
    12475 
    12476 14 models selected 
    12477 
    12478 > select add #2.443
    12479 
    12480 15 models selected 
    12481 
    12482 > select add #2.392
    12483 
    12484 16 models selected 
    12485 
    12486 > select add #2.320
    12487 
    12488 17 models selected 
    12489 
    12490 > select add #2.396
    12491 
    12492 18 models selected 
    12493 
    12494 > select add #2.479
    12495 
    12496 19 models selected 
    12497 
    12498 > select add #2.349
    12499 
    12500 20 models selected 
    12501 
    12502 > select add #2.329
    12503 
    12504 21 models selected 
    12505 
    12506 > select add #2.460
    12507 
    12508 22 models selected 
    12509 
    12510 > select add #2.435
    12511 
    12512 23 models selected 
    12513 
    12514 > select subtract #2.435
    12515 
    12516 22 models selected 
    12517 
    12518 > select add #2.421
    12519 
    12520 23 models selected 
    12521 
    12522 > select add #2.456
    12523 
    12524 24 models selected 
    12525 
    12526 > select add #2.435
    12527 
    12528 25 models selected 
    12529 
    12530 > select add #2.457
    12531 
    12532 26 models selected 
    12533 
    12534 > select add #2.465
    12535 
    12536 27 models selected 
    12537 
    12538 > select add #2.445
    12539 
    12540 28 models selected 
    12541 
    12542 > select add #2.373
    12543 
    12544 29 models selected 
    12545 
    12546 > select add #2.322
    12547 
    12548 30 models selected 
    12549 
    12550 > select add #2.351
    12551 
    12552 31 models selected 
    12553 
    12554 > select add #2.372
    12555 
    12556 32 models selected 
    12557 
    12558 > select add #2.464
    12559 
    12560 33 models selected 
    12561 Grouped 33 regions 
    12562 Opened Rev-CjpflAB-mask-L0_imasked_imasked_imasked as #9, grid size
    12563 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values float32 
    12564 
    12565 The cached device pixel ratio value was stale on window expose. Please file a
    12566 QTBUG which explains how to reproduce. 
    12567 
    12568 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    12569 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    12570 > segment_Aug2420204/OM.mrc models #9
    12571 
    12572 Opened Rev-CjpflAB-mask-L0_imasked_imasked_imasked as #10, grid size
    12573 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values float32 
    12574 Segmenting Rev-CjpflAB-mask-L0_imasked_imasked_imasked, density threshold
    12575 0.003143 
    12576 Showing 517 region surfaces 
    12577 27609 watershed regions, grouped to 517 regions 
    12578 Showing Rev-CjpflAB-mask-L0_imasked_imasked_imasked.seg - 517 regions, 517
    12579 surfaces 
    12580 
    12581 > hide #!9 models
    12582 
    12583 > select #2.342
    12584 
    12585 1 model selected 
    12586 
    12587 > select add #2.121
    12588 
    12589 2 models selected 
    12590 
    12591 > select add #2.169
    12592 
    12593 3 models selected 
    12594 
    12595 > select add #2.106
    12596 
    12597 4 models selected 
    12598 
    12599 > select add #2.181
    12600 
    12601 5 models selected 
    12602 
    12603 > select add #2.127
    12604 
    12605 6 models selected 
    12606 
    12607 > select add #2.149
    12608 
    12609 7 models selected 
    12610 
    12611 > select add #2.128
    12612 
    12613 8 models selected 
    12614 
    12615 > select add #2.183
    12616 
    12617 9 models selected 
    12618 
    12619 > select add #2.32
    12620 
    12621 10 models selected 
    12622 
    12623 > select add #2.70
    12624 
    12625 11 models selected 
    12626 
    12627 > select add #2.86
    12628 
    12629 12 models selected 
    12630 
    12631 > select add #2.66
    12632 
    12633 13 models selected 
    12634 
    12635 > select add #2.297
    12636 
    12637 14 models selected 
    12638 
    12639 > select add #2.423
    12640 
    12641 15 models selected 
    12642 
    12643 > select add #2.326
    12644 
    12645 16 models selected 
    12646 
    12647 > select add #2.46
    12648 
    12649 17 models selected 
    12650 
    12651 > select add #2.12
    12652 
    12653 18 models selected 
    12654 
    12655 > select add #2.74
    12656 
    12657 19 models selected 
    12658 
    12659 > select add #2.131
    12660 
    12661 20 models selected 
    12662 
    12663 > select add #2.250
    12664 
    12665 21 models selected 
    12666 
    12667 > select add #2.294
    12668 
    12669 22 models selected 
    12670 
    12671 > select add #2.327
    12672 
    12673 23 models selected 
    12674 
    12675 > select add #2.284
    12676 
    12677 24 models selected 
    12678 
    12679 > select subtract #2.284
    12680 
    12681 23 models selected 
    12682 
    12683 > select add #2.133
    12684 
    12685 24 models selected 
    12686 
    12687 > select add #2.270
    12688 
    12689 25 models selected 
    12690 
    12691 > select add #2.166
    12692 
    12693 26 models selected 
    12694 
    12695 > select add #2.258
    12696 
    12697 27 models selected 
    12698 
    12699 > select add #2.134
    12700 
    12701 28 models selected 
    12702 
    12703 > select add #2.213
    12704 
    12705 29 models selected 
    12706 
    12707 > select add #2.220
    12708 
    12709 30 models selected 
    12710 
    12711 > select add #2.276
    12712 
    12713 31 models selected 
    12714 
    12715 > select add #2.151
    12716 
    12717 32 models selected 
    12718 
    12719 > select add #2.41
    12720 
    12721 33 models selected 
    12722 
    12723 > select add #2.374
    12724 
    12725 34 models selected 
    12726 
    12727 > select add #2.345
    12728 
    12729 35 models selected 
    12730 
    12731 > select add #2.144
    12732 
    12733 36 models selected 
    12734 
    12735 > select add #2.79
    12736 
    12737 37 models selected 
    12738 
    12739 > select add #2.252
    12740 
    12741 38 models selected 
    12742 
    12743 > select add #2.204
    12744 
    12745 39 models selected 
    12746 
    12747 > select add #2.191
    12748 
    12749 40 models selected 
    12750 
    12751 > select add #2.145
    12752 
    12753 41 models selected 
    12754 
    12755 > select add #2.148
    12756 
    12757 42 models selected 
    12758 
    12759 > select add #2.174
    12760 
    12761 43 models selected 
    12762 
    12763 > select add #2.308
    12764 
    12765 44 models selected 
    12766 
    12767 > select add #2.214
    12768 
    12769 45 models selected 
    12770 
    12771 > select add #2.358
    12772 
    12773 46 models selected 
    12774 
    12775 > select add #2.373
    12776 
    12777 47 models selected 
    12778 
    12779 > select add #2.77
    12780 
    12781 48 models selected 
    12782 
    12783 > select add #2.124
    12784 
    12785 49 models selected 
    12786 
    12787 > select add #2.241
    12788 
    12789 50 models selected 
    12790 
    12791 > select add #2.85
    12792 
    12793 51 models selected 
    12794 
    12795 > select add #2.24
    12796 
    12797 52 models selected 
    12798 
    12799 > select add #2.284
    12800 
    12801 53 models selected 
    12802 
    12803 > select add #2.352
    12804 
    12805 54 models selected 
    12806 
    12807 > select add #2.217
    12808 
    12809 55 models selected 
    12810 
    12811 > select add #2.109
    12812 
    12813 56 models selected 
    12814 
    12815 > select add #2.279
    12816 
    12817 57 models selected 
    12818 
    12819 > select add #2.378
    12820 
    12821 58 models selected 
    12822 
    12823 > select add #2.139
    12824 
    12825 59 models selected 
    12826 
    12827 > select add #2.397
    12828 
    12829 60 models selected 
    12830 
    12831 > select add #2.118
    12832 
    12833 61 models selected 
    12834 
    12835 > select add #2.398
    12836 
    12837 62 models selected 
    12838 
    12839 > select add #2.299
    12840 
    12841 63 models selected 
    12842 
    12843 > select add #2.436
    12844 
    12845 64 models selected 
    12846 
    12847 > select add #2.371
    12848 
    12849 65 models selected 
    12850 
    12851 > select add #2.360
    12852 
    12853 66 models selected 
    12854 
    12855 > select add #2.200
    12856 
    12857 67 models selected 
    12858 
    12859 > select add #2.43
    12860 
    12861 68 models selected 
    12862 
    12863 > select add #2.369
    12864 
    12865 69 models selected 
    12866 
    12867 > select add #2.97
    12868 
    12869 70 models selected 
    12870 
    12871 > select add #2.404
    12872 
    12873 71 models selected 
    12874 
    12875 > select add #2.20
    12876 
    12877 72 models selected 
    12878 
    12879 > select add #2.420
    12880 
    12881 73 models selected 
    12882 
    12883 > select add #2.349
    12884 
    12885 74 models selected 
    12886 
    12887 > select add #2.362
    12888 
    12889 75 models selected 
    12890 
    12891 > select add #2.238
    12892 
    12893 76 models selected 
    12894 
    12895 > select add #2.289
    12896 
    12897 77 models selected 
    12898 
    12899 > select add #2.351
    12900 
    12901 78 models selected 
    12902 
    12903 > select add #2.407
    12904 
    12905 79 models selected 
    12906 Grouped 79 regions 
    12907 
    12908 > hide #!10 models
    12909 
    12910 > select add #2.430
    12911 
    12912 2 models selected 
    12913 Grouped 2 regions 
    12914 Showing 438 region surfaces 
    12915 
    12916 > select #2.12
    12917 
    12918 1 model selected 
    12919 Opened Rev-CjpflAB-mask-L0_imasked_imasked_imasked_imasked as #11, grid size
    12920 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values float32 
    12921 
    12922 The cached device pixel ratio value was stale on window expose. Please file a
    12923 QTBUG which explains how to reproduce. 
    12924 
    12925 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    12926 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    12927 > segment_Aug2420204/Basal-Disk.mrc models #11
    12928 
    12929 Opened Rev-CjpflAB-mask-L0_imasked_imasked_imasked_imasked as #12, grid size
    12930 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values float32 
    12931 Segmenting Rev-CjpflAB-mask-L0_imasked_imasked_imasked_imasked, density
    12932 threshold 0.003143 
    12933 Showing 437 region surfaces 
    12934 22918 watershed regions, grouped to 437 regions 
    12935 Showing Rev-CjpflAB-mask-L0_imasked_imasked_imasked_imasked.seg - 437 regions,
    12936 437 surfaces 
    12937 
    12938 > hide #!11 models
    12939 
    12940 > hide #!12 models
    12941 
    12942 > select #2.225
    12943 
    12944 1 model selected 
    12945 
    12946 > select add #2.101
    12947 
    12948 2 models selected 
    12949 
    12950 > select add #2.145
    12951 
    12952 3 models selected 
    12953 
    12954 > select add #2.128
    12955 
    12956 4 models selected 
    12957 
    12958 > select add #2.136
    12959 
    12960 5 models selected 
    12961 
    12962 > select add #2.148
    12963 
    12964 6 models selected 
    12965 
    12966 > select add #2.106
    12967 
    12968 7 models selected 
    12969 
    12970 > select add #2.107
    12971 
    12972 8 models selected 
    12973 
    12974 > select add #2.138
    12975 
    12976 9 models selected 
    12977 
    12978 > select add #2.186
    12979 
    12980 10 models selected 
    12981 
    12982 > select add #2.50
    12983 
    12984 11 models selected 
    12985 
    12986 > select add #2.68
    12987 
    12988 12 models selected 
    12989 
    12990 > select add #2.173
    12991 
    12992 13 models selected 
    12993 
    12994 > select add #2.183
    12995 
    12996 14 models selected 
    12997 
    12998 > select add #2.49
    12999 
    13000 15 models selected 
    13001 
    13002 > select add #2.77
    13003 
    13004 16 models selected 
    13005 
    13006 > select add #2.185
    13007 
    13008 17 models selected 
    13009 
    13010 > select add #2.212
    13011 
    13012 18 models selected 
    13013 
    13014 > select add #2.177
    13015 
    13016 19 models selected 
    13017 
    13018 > select add #2.146
    13019 
    13020 20 models selected 
    13021 
    13022 > select add #2.210
    13023 
    13024 21 models selected 
    13025 
    13026 > select add #2.162
    13027 
    13028 22 models selected 
    13029 
    13030 > select add #2.40
    13031 
    13032 23 models selected 
    13033 
    13034 > select add #2.154
    13035 
    13036 24 models selected 
    13037 
    13038 > select add #2.175
    13039 
    13040 25 models selected 
    13041 
    13042 > select add #2.141
    13043 
    13044 26 models selected 
    13045 
    13046 > select add #2.235
    13047 
    13048 27 models selected 
    13049 
    13050 > select add #2.144
    13051 
    13052 28 models selected 
    13053 
    13054 > select add #2.209
    13055 
    13056 29 models selected 
    13057 
    13058 > select add #2.64
    13059 
    13060 30 models selected 
    13061 
    13062 > select add #2.249
    13063 
    13064 31 models selected 
    13065 
    13066 > select add #2.45
    13067 
    13068 32 models selected 
    13069 
    13070 > select add #2.316
    13071 
    13072 33 models selected 
    13073 
    13074 > select add #2.356
    13075 
    13076 34 models selected 
    13077 
    13078 > select add #2.289
    13079 
    13080 35 models selected 
    13081 
    13082 > select add #2.314
    13083 
    13084 36 models selected 
    13085 
    13086 > select subtract #2.249
    13087 
    13088 35 models selected 
    13089 
    13090 > select #2.225
    13091 
    13092 1 model selected 
    13093 
    13094 > select add #2.101
    13095 
    13096 2 models selected 
    13097 
    13098 > select add #2.145
    13099 
    13100 3 models selected 
    13101 
    13102 > select add #2.128
    13103 
    13104 4 models selected 
    13105 
    13106 > select add #2.136
    13107 
    13108 5 models selected 
    13109 
    13110 > select add #2.148
    13111 
    13112 6 models selected 
    13113 
    13114 > select add #2.106
    13115 
    13116 7 models selected 
    13117 
    13118 > select add #2.107
    13119 
    13120 8 models selected 
    13121 
    13122 > select add #2.138
    13123 
    13124 9 models selected 
    13125 Grouped 9 regions 
    13126 
    13127 > select add #2.176
    13128 
    13129 2 models selected 
    13130 
    13131 > select add #2.178
    13132 
    13133 3 models selected 
    13134 
    13135 > select add #2.194
    13136 
    13137 4 models selected 
    13138 
    13139 > select add #2.175
    13140 
    13141 5 models selected 
    13142 
    13143 > select add #2.177
    13144 
    13145 6 models selected 
    13146 
    13147 > select add #2.183
    13148 
    13149 7 models selected 
    13150 
    13151 > select add #2.186
    13152 
    13153 8 models selected 
    13154 
    13155 > select add #2.173
    13156 
    13157 9 models selected 
    13158 Grouped 9 regions 
    13159 
    13160 > select add #2.49
    13161 
    13162 2 models selected 
    13163 
    13164 > select add #2.50
    13165 
    13166 3 models selected 
    13167 
    13168 > select add #2.146
    13169 
    13170 4 models selected 
    13171 
    13172 > select add #2.210
    13173 
    13174 5 models selected 
    13175 
    13176 > select add #2.209
    13177 
    13178 6 models selected 
    13179 
    13180 > select add #2.144
    13181 
    13182 7 models selected 
    13183 
    13184 > select add #2.235
    13185 
    13186 8 models selected 
    13187 
    13188 > select add #2.141
    13189 
    13190 9 models selected 
    13191 
    13192 > select add #2.198
    13193 
    13194 10 models selected 
    13195 
    13196 > select add #2.142
    13197 
    13198 11 models selected 
    13199 
    13200 > select add #2.119
    13201 
    13202 12 models selected 
    13203 
    13204 > select subtract #2.119
    13205 
    13206 11 models selected 
    13207 
    13208 > select add #2.147
    13209 
    13210 12 models selected 
    13211 
    13212 > select clear
    13213 
    13214 Showing 421 region surfaces 
    13215 
    13216 > select clear
    13217 
    13218 > select add #2.141
    13219 
    13220 1 model selected 
    13221 
    13222 > select add #2.142
    13223 
    13224 2 models selected 
    13225 
    13226 > select add #2.147
    13227 
    13228 3 models selected 
    13229 
    13230 > select add #2.118
    13231 
    13232 4 models selected 
    13233 
    13234 > select add #2.28
    13235 
    13236 5 models selected 
    13237 
    13238 > select add #2.146
    13239 
    13240 6 models selected 
    13241 
    13242 > select add #2.49
    13243 
    13244 7 models selected 
    13245 
    13246 > select add #2.50
    13247 
    13248 8 models selected 
    13249 
    13250 > select add #2.68
    13251 
    13252 9 models selected 
    13253 Grouped 9 regions 
    13254 
    13255 > select #2.185
    13256 
    13257 1 model selected 
    13258 
    13259 > select add #2.77
    13260 
    13261 2 models selected 
    13262 
    13263 > select add #2.212
    13264 
    13265 3 models selected 
    13266 
    13267 > select add #2.210
    13268 
    13269 4 models selected 
    13270 
    13271 > select add #2.162
    13272 
    13273 5 models selected 
    13274 
    13275 > select add #2.209
    13276 
    13277 6 models selected 
    13278 
    13279 > select add #2.235
    13280 
    13281 7 models selected 
    13282 
    13283 > select add #2.144
    13284 
    13285 8 models selected 
    13286 
    13287 > select add #2.205
    13288 
    13289 9 models selected 
    13290 
    13291 > select add #2.198
    13292 
    13293 10 models selected 
    13294 
    13295 > select add #2.153
    13296 
    13297 11 models selected 
    13298 
    13299 > select add #2.179
    13300 
    13301 12 models selected 
    13302 
    13303 > select add #2.184
    13304 
    13305 13 models selected 
    13306 
    13307 > select add #2.240
    13308 
    13309 14 models selected 
    13310 Grouped 14 regions 
    13311 
    13312 > select add #2.69
    13313 
    13314 2 models selected 
    13315 
    13316 > select add #2.84
    13317 
    13318 3 models selected 
    13319 
    13320 > select add #2.28
    13321 
    13322 4 models selected 
    13323 
    13324 > select add #2.101
    13325 
    13326 5 models selected 
    13327 Grouped 5 regions 
    13328 
    13329 > select #2.65
    13330 
    13331 1 model selected 
    13332 
    13333 > select add #2.76
    13334 
    13335 2 models selected 
    13336 
    13337 > select add #2.39
    13338 
    13339 3 models selected 
    13340 
    13341 > select add #2.204
    13342 
    13343 4 models selected 
    13344 
    13345 > select add #2.73
    13346 
    13347 5 models selected 
    13348 
    13349 > select add #2.43
    13350 
    13351 6 models selected 
    13352 
    13353 > select add #2.72
    13354 
    13355 7 models selected 
    13356 
    13357 > select add #2.45
    13358 
    13359 8 models selected 
    13360 
    13361 > select add #2.64
    13362 
    13363 9 models selected 
    13364 
    13365 > select add #2.40
    13366 
    13367 10 models selected 
    13368 
    13369 > select add #2.154
    13370 
    13371 11 models selected 
    13372 Grouped 11 regions 
    13373 
    13374 > select add #2.292
    13375 
    13376 2 models selected 
    13377 
    13378 > select add #2.350
    13379 
    13380 3 models selected 
    13381 
    13382 > select add #2.300
    13383 
    13384 4 models selected 
    13385 
    13386 > select add #2.271
    13387 
    13388 5 models selected 
    13389 
    13390 > select add #2.346
    13391 
    13392 6 models selected 
    13393 
    13394 > select add #2.243
    13395 
    13396 7 models selected 
    13397 
    13398 > select add #2.166
    13399 
    13400 8 models selected 
    13401 
    13402 > select add #2.325
    13403 
    13404 9 models selected 
    13405 
    13406 > select add #2.316
    13407 
    13408 10 models selected 
    13409 
    13410 > select add #2.356
    13411 
    13412 11 models selected 
    13413 
    13414 > select add #2.289
    13415 
    13416 12 models selected 
    13417 
    13418 > select add #2.314
    13419 
    13420 13 models selected 
    13421 Grouped 13 regions 
    13422 Ungrouped to 13 regions 
    13423 
    13424 > select subtract #2.50
    13425 
    13426 12 models selected 
    13427 Grouped 12 regions 
    13428 
    13429 > select #2.50
    13430 
    13431 1 model selected 
    13432 
    13433 > select add #2.349
    13434 
    13435 2 models selected 
    13436 
    13437 > select add #2.28
    13438 
    13439 3 models selected 
    13440 Grouped 3 regions 
    13441 
    13442 > select add #2.267
    13443 
    13444 2 models selected 
    13445 
    13446 > select add #2.252
    13447 
    13448 3 models selected 
    13449 
    13450 > select add #2.260
    13451 
    13452 4 models selected 
    13453 
    13454 > select add #2.249
    13455 
    13456 5 models selected 
    13457 Opened Rev-CjpflAB-mask-L0_imasked_imasked_imasked_imasked_imasked as #13,
    13458 grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values float32 
    13459 
    13460 The cached device pixel ratio value was stale on window expose. Please file a
    13461 QTBUG which explains how to reproduce. 
    13462 
    13463 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    13464 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    13465 > segment_Aug2420204/PflC-PflD.mrc models #13
    13466 
    13467 Opened Rev-CjpflAB-mask-L0_imasked_imasked_imasked_imasked_imasked as #14,
    13468 grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values float32 
    13469 Segmenting Rev-CjpflAB-mask-L0_imasked_imasked_imasked_imasked_imasked,
    13470 density threshold 0.003143 
    13471 Showing 377 region surfaces 
    13472 20568 watershed regions, grouped to 377 regions 
    13473 Showing Rev-CjpflAB-mask-L0_imasked_imasked_imasked_imasked_imasked.seg - 377
    13474 regions, 377 surfaces 
    13475 
    13476 > hide #!13 models
    13477 
    13478 > hide #!14 models
    13479 
    13480 > select #2.133
    13481 
    13482 1 model selected 
    13483 
    13484 > select add #2.267
    13485 
    13486 2 models selected 
    13487 
    13488 > select add #2.257
    13489 
    13490 3 models selected 
    13491 
    13492 > select add #2.231
    13493 
    13494 4 models selected 
    13495 
    13496 > select add #2.190
    13497 
    13498 5 models selected 
    13499 
    13500 > select add #2.163
    13501 
    13502 6 models selected 
    13503 
    13504 > select add #2.247
    13505 
    13506 7 models selected 
    13507 
    13508 > select add #2.285
    13509 
    13510 8 models selected 
    13511 
    13512 > select add #2.234
    13513 
    13514 9 models selected 
    13515 Grouped 9 regions 
    13516 
    13517 > select add #2.258
    13518 
    13519 2 models selected 
    13520 
    13521 > select add #2.307
    13522 
    13523 3 models selected 
    13524 Grouped 3 regions 
    13525 
    13526 > select #2.133
    13527 
    13528 1 model selected 
    13529 
    13530 > select add #2.313
    13531 
    13532 2 models selected 
    13533 Grouped 2 regions 
    13534 
    13535 > select #2.133
    13536 
    13537 1 model selected 
    13538 
    13539 > select add #2.296
    13540 
    13541 2 models selected 
    13542 Grouped 2 regions 
    13543 
    13544 > select add #2.320
    13545 
    13546 2 models selected 
    13547 Grouped 2 regions 
    13548 Opened Rev-CjpflAB-mask-L0_imasked_imasked_imasked_imasked_imasked_imasked as
    13549 #15, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    13550 float32 
    13551 
    13552 The cached device pixel ratio value was stale on window expose. Please file a
    13553 QTBUG which explains how to reproduce. 
    13554 
    13555 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    13556 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    13557 > segment_Aug2420204/Artifacts2.mrc models #15
    13558 
    13559 Opened Rev-CjpflAB-mask-L0_imasked_imasked_imasked_imasked_imasked_imasked as
    13560 #16, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    13561 float32 
    13562 Segmenting Rev-CjpflAB-
    13563 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked, density threshold
    13564 0.003143 
    13565 Showing 363 region surfaces 
    13566 19942 watershed regions, grouped to 363 regions 
    13567 Showing Rev-CjpflAB-
    13568 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked.seg - 363 regions, 363
    13569 surfaces 
    13570 
    13571 > hide #!15 models
    13572 
    13573 > hide #!16 models
    13574 
    13575 Drag select of 26869, 8524 of 13900 triangles, 26883, 6666 of 8720 triangles,
    13576 26871, 2613 of 5312 triangles, 26856, 3553 of 4572 triangles, 26615, 3559 of
    13577 3928 triangles, 26885, 3805 of 4036 triangles, 26877, 2500 of 3532 triangles,
    13578 26878, 1482 of 2732 triangles, 22762, 26906, 1277 of 2324 triangles, 25872,
    13579 26879, 24548, 1346 of 1468 triangles, 26863, 440 of 2068 triangles, 26607,
    13580 22757, 19884, 25911, 26903, 648 of 728 triangles, 26310, 26880, 26900, 99 of
    13581 496 triangles, 26886, 160 of 524 triangles, 19814 
    13582 Drag select of 19936, 19939 
    13583 Drag select of 26737, 420 of 804 triangles 
    13584 
    13585 > select add #2.313
    13586 
    13587 28 models selected 
    13588 
    13589 > select add #2.307
    13590 
    13591 29 models selected 
    13592 
    13593 > select add #2.346
    13594 
    13595 30 models selected 
    13596 
    13597 > select add #2.359
    13598 
    13599 31 models selected 
    13600 
    13601 > select add #2.311
    13602 
    13603 32 models selected 
    13604 
    13605 > select add #2.254
    13606 
    13607 33 models selected 
    13608 
    13609 > select add #2.291
    13610 
    13611 34 models selected 
    13612 
    13613 > select add #2.310
    13614 
    13615 35 models selected 
    13616 
    13617 > select add #2.294
    13618 
    13619 36 models selected 
    13620 
    13621 > select add #2.274
    13622 
    13623 37 models selected 
    13624 
    13625 > select add #2.282
    13626 
    13627 38 models selected 
    13628 
    13629 > select add #2.272
    13630 
    13631 39 models selected 
    13632 
    13633 > select add #2.299
    13634 
    13635 40 models selected 
    13636 
    13637 > select add #2.335
    13638 
    13639 41 models selected 
    13640 
    13641 > select add #2.360
    13642 
    13643 42 models selected 
    13644 
    13645 > select add #2.318
    13646 
    13647 43 models selected 
    13648 
    13649 > select add #2.305
    13650 
    13651 44 models selected 
    13652 
    13653 > select add #2.331
    13654 
    13655 45 models selected 
    13656 
    13657 > select add #2.315
    13658 
    13659 46 models selected 
    13660 
    13661 > select add #2.332
    13662 
    13663 47 models selected 
    13664 
    13665 > select add #2.322
    13666 
    13667 48 models selected 
    13668 
    13669 > select add #2.355
    13670 
    13671 49 models selected 
    13672 
    13673 > select add #2.348
    13674 
    13675 50 models selected 
    13676 Grouped 50 regions 
    13677 Opened Rev-CjpflAB-
    13678 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #17, grid
    13679 size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values float32 
    13680 Segmenting Rev-CjpflAB-
    13681 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked, density
    13682 threshold 0.003143 
    13683 Showing 315 region surfaces 
    13684 19467 watershed regions, grouped to 315 regions 
    13685 Showing Rev-CjpflAB-
    13686 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg - 315
    13687 regions, 315 surfaces 
    13688 
    13689 > select #2.135
    13690 
    13691 1 model selected 
    13692 
    13693 > select add #2.151
    13694 
    13695 2 models selected 
    13696 
    13697 > select add #2.146
    13698 
    13699 3 models selected 
    13700 
    13701 > select add #2.137
    13702 
    13703 4 models selected 
    13704 
    13705 > select add #2.89
    13706 
    13707 5 models selected 
    13708 
    13709 > hide #!17 models
    13710 
    13711 Grouped 5 regions 
    13712 Opened Rev-CjpflAB-
    13713 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
    13714 #18, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    13715 float32 
    13716 
    13717 The cached device pixel ratio value was stale on window expose. Please file a
    13718 QTBUG which explains how to reproduce. 
    13719 
    13720 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    13721 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    13722 > segment_Aug2420204/MotBpg.mrc models #18
    13723 
    13724 Opened Rev-CjpflAB-
    13725 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
    13726 #19, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    13727 float32 
    13728 Segmenting Rev-CjpflAB-
    13729 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    13730 density threshold 0.003143 
    13731 Showing 310 region surfaces 
    13732 19337 watershed regions, grouped to 310 regions 
    13733 Showing Rev-CjpflAB-
    13734 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg -
    13735 310 regions, 310 surfaces 
    13736 
    13737 > hide #!18 models
    13738 
    13739 > hide #!19 models
    13740 
    13741 > select #2.259
    13742 
    13743 1 model selected 
    13744 
    13745 > select add #2.269
    13746 
    13747 2 models selected 
    13748 
    13749 > select add #2.248
    13750 
    13751 3 models selected 
    13752 
    13753 > select add #2.278
    13754 
    13755 4 models selected 
    13756 
    13757 > select add #2.264
    13758 
    13759 5 models selected 
    13760 
    13761 > select add #2.292
    13762 
    13763 6 models selected 
    13764 
    13765 > select add #2.207
    13766 
    13767 7 models selected 
    13768 
    13769 > select add #2.258
    13770 
    13771 8 models selected 
    13772 
    13773 > select add #2.244
    13774 
    13775 9 models selected 
    13776 
    13777 > select add #2.272
    13778 
    13779 10 models selected 
    13780 
    13781 > select add #2.273
    13782 
    13783 11 models selected 
    13784 
    13785 > select add #2.257
    13786 
    13787 12 models selected 
    13788 
    13789 > select add #2.243
    13790 
    13791 13 models selected 
    13792 
    13793 > select add #2.275
    13794 
    13795 14 models selected 
    13796 Grouped 14 regions 
    13797 Opened Rev-CjpflAB-
    13798 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    13799 as #20, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    13800 float32 
    13801 
    13802 The cached device pixel ratio value was stale on window expose. Please file a
    13803 QTBUG which explains how to reproduce. 
    13804 
    13805 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    13806 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    13807 > segment_Aug2420204/Artifact3.mrc models #20
    13808 
    13809 Opened Rev-CjpflAB-
    13810 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    13811 as #21, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    13812 float32 
    13813 Segmenting Rev-CjpflAB-
    13814 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    13815 density threshold 0.003143 
    13816 Showing 296 region surfaces 
    13817 18845 watershed regions, grouped to 296 regions 
    13818 Showing Rev-CjpflAB-
    13819 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    13820 - 296 regions, 296 surfaces 
    13821 
    13822 > hide #!20 models
    13823 
    13824 > hide #!21 models
    13825 
    13826 > select #2.95
    13827 
    13828 1 model selected 
    13829 
    13830 > select add #2.116
    13831 
    13832 2 models selected 
    13833 
    13834 > select add #2.141
    13835 
    13836 3 models selected 
    13837 Grouped 3 regions 
    13838 
    13839 > select #2.220
    13840 
    13841 1 model selected 
    13842 
    13843 > select add #2.200
    13844 
    13845 2 models selected 
    13846 
    13847 > select add #2.165
    13848 
    13849 3 models selected 
    13850 
    13851 > select add #2.260
    13852 
    13853 4 models selected 
    13854 Grouped 4 regions 
    13855 
    13856 > select add #2.140
    13857 
    13858 2 models selected 
    13859 Grouped 2 regions 
    13860 
    13861 > select #2.109
    13862 
    13863 1 model selected 
    13864 
    13865 > select add #2.168
    13866 
    13867 2 models selected 
    13868 
    13869 > select add #2.116
    13870 
    13871 3 models selected 
    13872 Grouped 3 regions 
    13873 
    13874 > select add #2.83
    13875 
    13876 2 models selected 
    13877 Grouped 2 regions 
    13878 
    13879 > select add #2.93
    13880 
    13881 2 models selected 
    13882 
    13883 > select add #2.155
    13884 
    13885 3 models selected 
    13886 
    13887 > select add #2.124
    13888 
    13889 4 models selected 
    13890 Grouped 4 regions 
    13891 
    13892 > select add #2.95
    13893 
    13894 2 models selected 
    13895 Grouped 2 regions 
    13896 
    13897 > select add #2.218
    13898 
    13899 2 models selected 
    13900 
    13901 > select add #2.199
    13902 
    13903 3 models selected 
    13904 
    13905 > select add #2.157
    13906 
    13907 4 models selected 
    13908 
    13909 > select add #2.254
    13910 
    13911 5 models selected 
    13912 
    13913 > select add #2.148
    13914 
    13915 6 models selected 
    13916 Grouped 6 regions 
    13917 
    13918 > select add #2.222
    13919 
    13920 2 models selected 
    13921 
    13922 > select add #2.215
    13923 
    13924 3 models selected 
    13925 
    13926 > select add #2.127
    13927 
    13928 4 models selected 
    13929 
    13930 > select add #2.98
    13931 
    13932 5 models selected 
    13933 Grouped 5 regions 
    13934 
    13935 > select add #2.228
    13936 
    13937 2 models selected 
    13938 
    13939 > select add #2.110
    13940 
    13941 3 models selected 
    13942 
    13943 > select add #2.135
    13944 
    13945 4 models selected 
    13946 Grouped 4 regions 
    13947 
    13948 > select #2.139
    13949 
    13950 1 model selected 
    13951 Ungrouped to 4 regions 
    13952 
    13953 > select #2.109
    13954 
    13955 1 model selected 
    13956 
    13957 > select add #2.83
    13958 
    13959 2 models selected 
    13960 Grouped 2 regions 
    13961 
    13962 > select #2.93
    13963 
    13964 1 model selected 
    13965 Ungrouped to 15 regions 
    13966 
    13967 > select #2.127
    13968 
    13969 1 model selected 
    13970 
    13971 > select add #2.140
    13972 
    13973 2 models selected 
    13974 
    13975 > select add #2.83
    13976 
    13977 3 models selected 
    13978 Grouped 3 regions 
    13979 
    13980 > select #2.39
    13981 
    13982 1 model selected 
    13983 
    13984 > select add #2.102
    13985 
    13986 2 models selected 
    13987 
    13988 > select add #2.162
    13989 
    13990 3 models selected 
    13991 
    13992 > select add #2.26
    13993 
    13994 4 models selected 
    13995 
    13996 > select subtract #2.26
    13997 
    13998 3 models selected 
    13999 Ungrouped to 10 regions 
    14000 Ungrouped to 75 regions 
    14001 Ungrouped to 127 regions 
    14002 
    14003 > select #2.26
    14004 
    14005 1 model selected 
    14006 
    14007 > select subtract #2.26
    14008 
    14009 Nothing selected 
    14010 Ungrouped to 376 regions 
    14011 Ungrouped to 1634 regions 
    14012 
    14013 > select #2.1055
    14014 
    14015 1 model selected 
    14016 
    14017 > select #2.1055
    14018 
    14019 1 model selected 
    14020 
    14021 > select #2.1051
    14022 
    14023 1 model selected 
    14024 
    14025 > select add #2.1056
    14026 
    14027 2 models selected 
    14028 
    14029 > select add #2.1052
    14030 
    14031 3 models selected 
    14032 Ungrouped to 29 regions 
    14033 
    14034 > select #2.105
    14035 
    14036 1 model selected 
    14037 
    14038 > select add #2.100
    14039 
    14040 2 models selected 
    14041 
    14042 > select add #2.90
    14043 
    14044 3 models selected 
    14045 
    14046 > select add #2.76
    14047 
    14048 4 models selected 
    14049 
    14050 > select add #2.80
    14051 
    14052 5 models selected 
    14053 
    14054 > select add #2.45
    14055 
    14056 6 models selected 
    14057 
    14058 > select add #2.1055
    14059 
    14060 7 models selected 
    14061 
    14062 > select add #2.115
    14063 
    14064 8 models selected 
    14065 
    14066 > select subtract #2.115
    14067 
    14068 7 models selected 
    14069 
    14070 > select #2.1055
    14071 
    14072 1 model selected 
    14073 Ungrouped to 9 regions 
    14074 
    14075 > select #2.2304
    14076 
    14077 1 model selected 
    14078 
    14079 > select #2.1733
    14080 
    14081 1 model selected 
    14082 
    14083 > select add #2.1731
    14084 
    14085 2 models selected 
    14086 
    14087 > select add #2.1732
    14088 
    14089 3 models selected 
    14090 Grouped 3 regions 
    14091 
    14092 > select add #2.96
    14093 
    14094 2 models selected 
    14095 
    14096 > select add #2.106
    14097 
    14098 3 models selected 
    14099 
    14100 > select add #2.81
    14101 
    14102 4 models selected 
    14103 
    14104 > select add #2.63
    14105 
    14106 5 models selected 
    14107 
    14108 > select add #2.71
    14109 
    14110 6 models selected 
    14111 
    14112 > select add #2.119
    14113 
    14114 7 models selected 
    14115 
    14116 > select add #2.111
    14117 
    14118 8 models selected 
    14119 
    14120 > select add #2.1735
    14121 
    14122 9 models selected 
    14123 
    14124 > select add #2.1734
    14125 
    14126 10 models selected 
    14127 Grouped 10 regions 
    14128 
    14129 > select add #2.2304
    14130 
    14131 2 models selected 
    14132 
    14133 > select add #2.1963
    14134 
    14135 3 models selected 
    14136 
    14137 > select subtract #2.1963
    14138 
    14139 2 models selected 
    14140 
    14141 > select add #2.1963
    14142 
    14143 3 models selected 
    14144 
    14145 > select add #2.113
    14146 
    14147 4 models selected 
    14148 
    14149 > select add #2.1965
    14150 
    14151 5 models selected 
    14152 
    14153 > select add #2.2324
    14154 
    14155 6 models selected 
    14156 
    14157 > select add #2.499
    14158 
    14159 7 models selected 
    14160 Grouped 7 regions 
    14161 
    14162 > select add #2.902
    14163 
    14164 2 models selected 
    14165 
    14166 > select add #2.2306
    14167 
    14168 3 models selected 
    14169 
    14170 > select add #2.901
    14171 
    14172 4 models selected 
    14173 
    14174 > select add #2.900
    14175 
    14176 5 models selected 
    14177 Grouped 5 regions 
    14178 
    14179 > select add #2.122
    14180 
    14181 2 models selected 
    14182 
    14183 > select add #2.427
    14184 
    14185 3 models selected 
    14186 
    14187 > select add #2.428
    14188 
    14189 4 models selected 
    14190 
    14191 > select subtract #2.428
    14192 
    14193 3 models selected 
    14194 
    14195 > select subtract #2.427
    14196 
    14197 2 models selected 
    14198 
    14199 > select add #2.378
    14200 
    14201 3 models selected 
    14202 
    14203 > select add #2.347
    14204 
    14205 4 models selected 
    14206 
    14207 > select add #2.382
    14208 
    14209 5 models selected 
    14210 
    14211 > select add #2.466
    14212 
    14213 6 models selected 
    14214 
    14215 > select add #2.473
    14216 
    14217 7 models selected 
    14218 
    14219 > select add #2.228
    14220 
    14221 8 models selected 
    14222 Grouped 8 regions 
    14223 
    14224 > select add #2.427
    14225 
    14226 2 models selected 
    14227 
    14228 > select add #2.428
    14229 
    14230 3 models selected 
    14231 
    14232 > select add #2.429
    14233 
    14234 4 models selected 
    14235 
    14236 > select add #2.336
    14237 
    14238 5 models selected 
    14239 
    14240 > select add #2.379
    14241 
    14242 6 models selected 
    14243 
    14244 > select add #2.384
    14245 
    14246 7 models selected 
    14247 
    14248 > select add #2.360
    14249 
    14250 8 models selected 
    14251 
    14252 > select add #2.133
    14253 
    14254 9 models selected 
    14255 
    14256 > select add #2.132
    14257 
    14258 10 models selected 
    14259 
    14260 > select add #2.1050
    14261 
    14262 11 models selected 
    14263 
    14264 > select add #2.1053
    14265 
    14266 12 models selected 
    14267 
    14268 > select subtract #2.1053
    14269 
    14270 11 models selected 
    14271 Grouped 11 regions 
    14272 
    14273 > select add #2.383
    14274 
    14275 2 models selected 
    14276 Grouped 2 regions 
    14277 
    14278 > select clear
    14279 
    14280 > select #2.1053
    14281 
    14282 1 model selected 
    14283 Ungrouped to 15 regions 
    14284 
    14285 > select #2.137
    14286 
    14287 1 model selected 
    14288 
    14289 > select add #2.134
    14290 
    14291 2 models selected 
    14292 
    14293 > select add #2.63
    14294 
    14295 3 models selected 
    14296 Grouped 3 regions 
    14297 
    14298 > select add #2.112
    14299 
    14300 2 models selected 
    14301 
    14302 > select #2.63
    14303 
    14304 1 model selected 
    14305 
    14306 > select #2.63
    14307 
    14308 1 model selected 
    14309 
    14310 > select add #2.112
    14311 
    14312 2 models selected 
    14313 
    14314 > select add #2.117
    14315 
    14316 3 models selected 
    14317 
    14318 > select add #2.45
    14319 
    14320 4 models selected 
    14321 
    14322 > select add #2.76
    14323 
    14324 5 models selected 
    14325 
    14326 > select add #2.80
    14327 
    14328 6 models selected 
    14329 
    14330 > select add #2.105
    14331 
    14332 7 models selected 
    14333 
    14334 > select add #2.97
    14335 
    14336 8 models selected 
    14337 
    14338 > select subtract #2.97
    14339 
    14340 7 models selected 
    14341 
    14342 > select add #2.100
    14343 
    14344 8 models selected 
    14345 
    14346 > select add #2.90
    14347 
    14348 9 models selected 
    14349 Grouped 9 regions 
    14350 
    14351 > select add #2.101
    14352 
    14353 2 models selected 
    14354 
    14355 > select clear
    14356 
    14357 > select #2.101
    14358 
    14359 1 model selected 
    14360 Ungrouped to 2 regions 
    14361 
    14362 > select #2.63
    14363 
    14364 1 model selected 
    14365 
    14366 > select add #2.76
    14367 
    14368 2 models selected 
    14369 
    14370 > select add #2.92
    14371 
    14372 3 models selected 
    14373 Grouped 3 regions 
    14374 
    14375 > select add #2.45
    14376 
    14377 2 models selected 
    14378 Grouped 2 regions 
    14379 
    14380 > select add #2.108
    14381 
    14382 2 models selected 
    14383 
    14384 > select add #2.366
    14385 
    14386 3 models selected 
    14387 
    14388 > select add #2.420
    14389 
    14390 4 models selected 
    14391 
    14392 > select add #2.318
    14393 
    14394 5 models selected 
    14395 
    14396 > select add #2.355
    14397 
    14398 6 models selected 
    14399 
    14400 > select add #2.422
    14401 
    14402 7 models selected 
    14403 
    14404 > select add #2.421
    14405 
    14406 8 models selected 
    14407 
    14408 > select add #2.413
    14409 
    14410 9 models selected 
    14411 
    14412 > select add #2.475
    14413 
    14414 10 models selected 
    14415 
    14416 > select add #2.414
    14417 
    14418 11 models selected 
    14419 Grouped 11 regions 
    14420 
    14421 > select add #2.354
    14422 
    14423 2 models selected 
    14424 
    14425 > select add #2.400
    14426 
    14427 3 models selected 
    14428 
    14429 > select add #2.469
    14430 
    14431 4 models selected 
    14432 Grouped 4 regions 
    14433 
    14434 > select add #2.476
    14435 
    14436 2 models selected 
    14437 
    14438 > select add #2.401
    14439 
    14440 3 models selected 
    14441 Grouped 3 regions 
    14442 
    14443 > select add #2.402
    14444 
    14445 2 models selected 
    14446 
    14447 > select add #2.346
    14448 
    14449 3 models selected 
    14450 
    14451 > select add #2.477
    14452 
    14453 4 models selected 
    14454 
    14455 > select add #2.222
    14456 
    14457 5 models selected 
    14458 
    14459 > select add #2.403
    14460 
    14461 6 models selected 
    14462 
    14463 > select add #2.305
    14464 
    14465 7 models selected 
    14466 Grouped 7 regions 
    14467 
    14468 > select add #2.371
    14469 
    14470 2 models selected 
    14471 
    14472 > select add #2.474
    14473 
    14474 3 models selected 
    14475 
    14476 > select add #2.391
    14477 
    14478 4 models selected 
    14479 
    14480 > select add #2.303
    14481 
    14482 5 models selected 
    14483 
    14484 > select add #2.482
    14485 
    14486 6 models selected 
    14487 
    14488 > select add #2.464
    14489 
    14490 7 models selected 
    14491 
    14492 > select add #2.478
    14493 
    14494 8 models selected 
    14495 
    14496 > select add #2.480
    14497 
    14498 9 models selected 
    14499 Grouped 9 regions 
    14500 
    14501 > select add #2.416
    14502 
    14503 2 models selected 
    14504 
    14505 > select add #2.387
    14506 
    14507 3 models selected 
    14508 
    14509 > select add #2.404
    14510 
    14511 4 models selected 
    14512 
    14513 > select add #2.405
    14514 
    14515 5 models selected 
    14516 
    14517 > select add #2.479
    14518 
    14519 6 models selected 
    14520 
    14521 > select add #2.373
    14522 
    14523 7 models selected 
    14524 Grouped 7 regions 
    14525 
    14526 > select add #2.406
    14527 
    14528 2 models selected 
    14529 Grouped 2 regions 
    14530 
    14531 > select add #2.415
    14532 
    14533 2 models selected 
    14534 
    14535 > select add #2.372
    14536 
    14537 3 models selected 
    14538 Grouped 3 regions 
    14539 
    14540 > select add #2.299
    14541 
    14542 2 models selected 
    14543 
    14544 > select subtract #2.299
    14545 
    14546 1 model selected 
    14547 Grouped 1 regions 
    14548 
    14549 > select #2.45
    14550 
    14551 1 model selected 
    14552 
    14553 > select add #2.299
    14554 
    14555 2 models selected 
    14556 Grouped 2 regions 
    14557 
    14558 > select add #2.356
    14559 
    14560 2 models selected 
    14561 
    14562 > select add #2.380
    14563 
    14564 3 models selected 
    14565 Grouped 3 regions 
    14566 
    14567 > select #2.83
    14568 
    14569 1 model selected 
    14570 
    14571 > select clear
    14572 
    14573 Showing 1942 region surfaces 
    14574 
    14575 > select #2.45
    14576 
    14577 1 model selected 
    14578 
    14579 > select add #2.118
    14580 
    14581 2 models selected 
    14582 
    14583 > select add #2.99
    14584 
    14585 3 models selected 
    14586 
    14587 > select add #2.2098
    14588 
    14589 4 models selected 
    14590 
    14591 > select add #2.2099
    14592 
    14593 5 models selected 
    14594 
    14595 > select add #2.120
    14596 
    14597 6 models selected 
    14598 
    14599 > select subtract #2.118
    14600 
    14601 5 models selected 
    14602 
    14603 > select subtract #2.45
    14604 
    14605 4 models selected 
    14606 
    14607 > select add #2.115
    14608 
    14609 5 models selected 
    14610 
    14611 > select add #2.488
    14612 
    14613 6 models selected 
    14614 
    14615 > select add #2.45
    14616 
    14617 7 models selected 
    14618 
    14619 > select add #2.2307
    14620 
    14621 8 models selected 
    14622 
    14623 > select add #2.2309
    14624 
    14625 9 models selected 
    14626 
    14627 > select subtract #2.2307
    14628 
    14629 8 models selected 
    14630 Grouped 8 regions 
    14631 
    14632 > select add #2.118
    14633 
    14634 2 models selected 
    14635 
    14636 > select add #2.2308
    14637 
    14638 3 models selected 
    14639 
    14640 > select add #2.104
    14641 
    14642 4 models selected 
    14643 Grouped 4 regions 
    14644 
    14645 > select add #2.2307
    14646 
    14647 2 models selected 
    14648 
    14649 > select subtract #2.2307
    14650 
    14651 1 model selected 
    14652 Grouped 1 regions 
    14653 
    14654 > select #2.2307
    14655 
    14656 1 model selected 
    14657 
    14658 > select subtract #2.2307
    14659 
    14660 Nothing selected 
    14661 
    14662 > select add #2.2307
    14663 
    14664 1 model selected 
    14665 
    14666 > select add #2.45
    14667 
    14668 2 models selected 
    14669 Grouped 2 regions 
    14670 
    14671 > select add #2.1959
    14672 
    14673 2 models selected 
    14674 
    14675 > select subtract #2.1959
    14676 
    14677 1 model selected 
    14678 
    14679 > select clear
    14680 
    14681 > select #2.45
    14682 
    14683 1 model selected 
    14684 
    14685 > select #2.45
    14686 
    14687 1 model selected 
    14688 
    14689 > select add #2.2305
    14690 
    14691 2 models selected 
    14692 
    14693 > select add #2.2325
    14694 
    14695 3 models selected 
    14696 
    14697 > select add #2.2326
    14698 
    14699 4 models selected 
    14700 
    14701 > select add #2.1964
    14702 
    14703 5 models selected 
    14704 
    14705 > select add #2.899
    14706 
    14707 6 models selected 
    14708 Grouped 6 regions 
    14709 
    14710 > select clear
    14711 
    14712 > select #2.45
    14713 
    14714 1 model selected 
    14715 
    14716 > select clear
    14717 
    14718 > select #2.45
    14719 
    14720 1 model selected 
    14721 Grouped 1 regions 
    14722 
    14723 > select clear
    14724 
    14725 > select #2.45
    14726 
    14727 1 model selected 
    14728 Ungrouped to 1 regions 
    14729 Ungrouped to 6 regions 
    14730 Ungrouped to 26 regions 
    14731 Ungrouped to 76 regions 
    14732 Ungrouped to 22 regions 
    14733 Ungrouped to 24 regions 
    14734 
    14735 > select #2.355
    14736 
    14737 1 model selected 
    14738 Ungrouped to 3 regions 
    14739 Ungrouped to 2 regions 
    14740 Ungrouped to 1 regions 
    14741 Ungrouped to 3 regions 
    14742 
    14743 > select #2.355
    14744 
    14745 1 model selected 
    14746 Ungrouped to 2 regions 
    14747 Ungrouped to 7 regions 
    14748 
    14749 > select #2.401
    14750 
    14751 1 model selected 
    14752 Ungrouped to 9 regions 
    14753 Ungrouped to 15 regions 
    14754 
    14755 > select clear
    14756 
    14757 > select #2.478
    14758 
    14759 1 model selected 
    14760 Ungrouped to 3 regions 
    14761 Ungrouped to 4 regions 
    14762 
    14763 > select #2.482
    14764 
    14765 1 model selected 
    14766 Ungrouped to 11 regions 
    14767 Ungrouped to 7 regions 
    14768 
    14769 > select #2.515
    14770 
    14771 1 model selected 
    14772 Ungrouped to 9 regions 
    14773 Ungrouped to 13 regions 
    14774 
    14775 > select #2.537
    14776 
    14777 1 model selected 
    14778 Ungrouped to 2 regions 
    14779 Ungrouped to 11 regions 
    14780 
    14781 > select #2.519
    14782 
    14783 1 model selected 
    14784 Ungrouped to 8 regions 
    14785 Ungrouped to 12 regions 
    14786 
    14787 > select #2.593
    14788 
    14789 1 model selected 
    14790 Ungrouped to 7 regions 
    14791 Ungrouped to 69 regions 
    14792 
    14793 > select #2.673
    14794 
    14795 1 model selected 
    14796 
    14797 > select #2.673
    14798 
    14799 1 model selected 
    14800 Ungrouped to 7 regions 
    14801 Ungrouped to 0 regions 
    14802 
    14803 > select #2.573
    14804 
    14805 1 model selected 
    14806 
    14807 > select add #2.571
    14808 
    14809 2 models selected 
    14810 
    14811 > select add #2.596
    14812 
    14813 3 models selected 
    14814 
    14815 > select clear
    14816 
    14817 [Repeated 1 time(s)]Drag select of 15694, 14388, 16045, 16119, 16211, 15016,
    14818 16290, 16865, 15943, 14406, 15573, 15432, 15266, 15574, 16049, 16534, 14863,
    14819 15839, 15431, 15259, 15070, 14646, 16373, 16141, 15433, 15712, 15260, 15946,
    14820 15240, 15557, 16129, 15822, 15054, 16482, 15954, 15395, 16112, 16123, 15929,
    14821 14813, 14590, 14584, 14359, 15022, 14114, 15399, 16521, 14785, 16636, 16281,
    14822 15212, 15674, 14578, 15386, 15390, 13616, 12099, 14607, 14130, 11794, 15414,
    14823 15245, 15052, 15820, 15239, 14834, 14870, 15268, 14828, 16433, 16477, 15942,
    14824 15695, 15041, 15404, 15408, 15411, 15235, 11181, 11482, 14819, 15690, 12726,
    14825 12729, 11498, 10881, 13895, 12738, 11182, 12415, 12413, 12097, 14369, 13040,
    14826 14611, 14151, 19250, 10928, 14189, 19089, 19098, 19767, 23443, 23645, 23452,
    14827 24113, 24408, 24073, 24583, 13916, 14171, 13083, 12149, 19280, 20563, 12127,
    14828 19547, 19067, 12748, 17713, 16652, 18162, 18168, 18247, 17574, 17797, 17702,
    14829 17922, 17342, 16581, 16427, 16859, 16741, 16579, 16645, 16432, 16704, 16997,
    14830 16861, 17918, 17921, 17690, 16644, 16646, 16746, 17799, 17349, 21277, 18249,
    14831 17810, 17709, 18251, 18311, 17926, 18177, 18172, 18092, 16866, 17222, 16798,
    14832 18022, 18182, 17600, 17715, 17229, 17941, 17480, 16585, 16796, 16749, 25410,
    14833 17829, 18393, 18190, 17828, 17833, 18109, 17120, 17245, 17946, 18263, 17831,
    14834 17834, 17732, 18189, 17375, 17121, 16718, 22894, 16867, 16939, 16487, 16803,
    14835 17113, 16653, 16811, 16805, 16439, 16584, 16535, 16587, 16714, 16527, 16478,
    14836 16524, 16794, 16709, 16748, 16435, 16586, 24570, 24048, 23922, 13912 of 13984
    14837 triangles, 24655, 22984, 21069, 21011, 23263, 16227, 16138, 14395, 15058,
    14838 21667, 20987, 20972, 19207, 23293, 23216, 15821, 15228, 14155, 15945, 13656,
    14839 13653, 20073, 14393, 19003, 11533, 19965, 15251, 23275, 23197, 16139, 14637,
    14840 21830, 23091, 16542, 16596, 21433, 23963, 25401, 33304 of 33372 triangles,
    14841 16658, 21548, 23885, 21384, 21633, 21426, 19212, 23244, 16127, 16031, 21130,
    14842 16019, 21148, 16218, 15697, 15231, 14612, 14822, 21073, 21182, 23385, 23271,
    14843 16143, 14657, 14421, 21855, 23076, 23012, 23052, 23097, 16489, 16541, 16954,
    14844 16814, 16755 
    14845 Grouped 286 regions 
    14846 
    14847 > select clear
    14848 
    14849 Showing 1929 region surfaces 
    14850 
    14851 > select #2.45
    14852 
    14853 1 model selected 
    14854 Opened Rev-CjpflAB-
    14855 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    14856 as #22, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    14857 float32 
    14858 
    14859 The cached device pixel ratio value was stale on window expose. Please file a
    14860 QTBUG which explains how to reproduce. 
    14861 
    14862 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    14863 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    14864 > segment_Aug2420204/MS-ring.mrc models #22
    14865 
    14866 Opened Rev-CjpflAB-
    14867 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    14868 as #23, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    14869 float32 
    14870 Segmenting Rev-CjpflAB-
    14871 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    14872 density threshold 0.003143 
    14873 Showing 290 region surfaces 
    14874 18166 watershed regions, grouped to 290 regions 
    14875 Showing Rev-CjpflAB-
    14876 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    14877 - 290 regions, 290 surfaces 
    14878 
    14879 > hide #!22 models
    14880 
    14881 > hide #!23 models
    14882 
    14883 > select #2.90
    14884 
    14885 1 model selected 
    14886 
    14887 > select add #2.110
    14888 
    14889 2 models selected 
    14890 
    14891 > select add #2.133
    14892 
    14893 3 models selected 
    14894 Grouped 3 regions 
    14895 
    14896 > select add #2.211
    14897 
    14898 2 models selected 
    14899 
    14900 > select add #2.191
    14901 
    14902 3 models selected 
    14903 
    14904 > select add #2.148
    14905 
    14906 4 models selected 
    14907 
    14908 > select add #2.248
    14909 
    14910 5 models selected 
    14911 Drag select of 24474, 18 of 70876 triangles, 24048, 6 of 15928 triangles,
    14912 24459, 11 of 15700 triangles, 24074, 16 of 16680 triangles 
    14913 
    14914 > select add #2.148
    14915 
    14916 8 models selected 
    14917 Showing 288 region surfaces 
    14918 
    14919 > select #2.90
    14920 
    14921 1 model selected 
    14922 
    14923 > select add #2.132
    14924 
    14925 2 models selected 
    14926 
    14927 > select add #2.254
    14928 
    14929 3 models selected 
    14930 
    14931 > select add #2.155
    14932 
    14933 4 models selected 
    14934 
    14935 > select add #2.192
    14936 
    14937 5 models selected 
    14938 
    14939 > select add #2.213
    14940 
    14941 6 models selected 
    14942 Grouped 6 regions 
    14943 
    14944 > select #2.211
    14945 
    14946 1 model selected 
    14947 
    14948 > select add #2.191
    14949 
    14950 2 models selected 
    14951 
    14952 > select add #2.148
    14953 
    14954 3 models selected 
    14955 
    14956 > select add #2.248
    14957 
    14958 4 models selected 
    14959 
    14960 > select add #2.139
    14961 
    14962 5 models selected 
    14963 Grouped 5 regions 
    14964 
    14965 > select #2.215
    14966 
    14967 1 model selected 
    14968 
    14969 > select add #2.208
    14970 
    14971 2 models selected 
    14972 
    14973 > select add #2.120
    14974 
    14975 3 models selected 
    14976 
    14977 > select add #2.93
    14978 
    14979 4 models selected 
    14980 
    14981 > select add #2.131
    14982 
    14983 5 models selected 
    14984 
    14985 > select add #2.222
    14986 
    14987 6 models selected 
    14988 
    14989 > select add #2.104
    14990 
    14991 7 models selected 
    14992 
    14993 > select add #2.127
    14994 
    14995 8 models selected 
    14996 Grouped 8 regions 
    14997 
    14998 > select add #2.110
    14999 
    15000 2 models selected 
    15001 
    15002 > select add #2.90
    15003 
    15004 3 models selected 
    15005 Grouped 3 regions 
    15006 
    15007 > select add #2.79
    15008 
    15009 2 models selected 
    15010 
    15011 > select #2.79
    15012 
    15013 1 model selected 
    15014 
    15015 > select add #2.159
    15016 
    15017 2 models selected 
    15018 
    15019 > select add #2.103
    15020 
    15021 3 models selected 
    15022 
    15023 > select add #2.88
    15024 
    15025 4 models selected 
    15026 
    15027 > select add #2.146
    15028 
    15029 5 models selected 
    15030 
    15031 > select add #2.117
    15032 
    15033 6 models selected 
    15034 Grouped 6 regions 
    15035 
    15036 > select add #2.90
    15037 
    15038 2 models selected 
    15039 
    15040 > select add #2.53
    15041 
    15042 3 models selected 
    15043 
    15044 > select add #2.201
    15045 
    15046 4 models selected 
    15047 
    15048 > select add #2.168
    15049 
    15050 5 models selected 
    15051 
    15052 > select add #2.156
    15053 
    15054 6 models selected 
    15055 
    15056 > select add #2.219
    15057 
    15058 7 models selected 
    15059 Grouped 7 regions 
    15060 Opened Rev-CjpflAB-
    15061 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    15062 as #24, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    15063 float32 
    15064 
    15065 The cached device pixel ratio value was stale on window expose. Please file a
    15066 QTBUG which explains how to reproduce. 
    15067 
    15068 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    15069 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    15070 > segment_Aug2420204/FlgY-PflA.mrc models #24
    15071 
    15072 Opened Rev-CjpflAB-
    15073 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    15074 as #25, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    15075 float32 
    15076 Segmenting Rev-CjpflAB-
    15077 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    15078 density threshold 0.003143 
    15079 Showing 258 region surfaces 
    15080 17247 watershed regions, grouped to 258 regions 
    15081 Showing Rev-CjpflAB-
    15082 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    15083 - 258 regions, 258 surfaces 
    15084 
    15085 > hide #!24 models
    15086 
    15087 > hide #!25 models
    15088 
    15089 > select #2.45
    15090 
    15091 1 model selected 
    15092 
    15093 > select #2.30
    15094 
    15095 1 model selected 
    15096 Ungrouped to 2 regions 
    15097 
    15098 > select #2.260
    15099 
    15100 1 model selected 
    15101 Ungrouped to 14 regions 
    15102 
    15103 > select subtract #2.269
    15104 
    15105 13 models selected 
    15106 
    15107 > select #2.259
    15108 
    15109 1 model selected 
    15110 
    15111 > select add #2.269
    15112 
    15113 2 models selected 
    15114 Grouped 2 regions 
    15115 
    15116 > select add #2.157
    15117 
    15118 2 models selected 
    15119 Grouped 2 regions 
    15120 
    15121 > select #2.26
    15122 
    15123 1 model selected 
    15124 Ungrouped to 2 regions 
    15125 
    15126 > select #2.260
    15127 
    15128 1 model selected 
    15129 
    15130 > select add #2.157
    15131 
    15132 2 models selected 
    15133 Grouped 2 regions 
    15134 
    15135 > select #2.127
    15136 
    15137 1 model selected 
    15138 Ungrouped to 4 regions 
    15139 
    15140 > select #2.157
    15141 
    15142 1 model selected 
    15143 
    15144 > select add #2.269
    15145 
    15146 2 models selected 
    15147 
    15148 > select add #2.26
    15149 
    15150 3 models selected 
    15151 
    15152 > select subtract #2.26
    15153 
    15154 2 models selected 
    15155 Grouped 2 regions 
    15156 
    15157 > select #2.26
    15158 
    15159 1 model selected 
    15160 
    15161 > select add #2.127
    15162 
    15163 2 models selected 
    15164 
    15165 > select clear
    15166 
    15167 > select #2.127
    15168 
    15169 1 model selected 
    15170 Ungrouped to 2 regions 
    15171 
    15172 > select #2.269
    15173 
    15174 1 model selected 
    15175 Ungrouped to 9 regions 
    15176 
    15177 > select #2.280
    15178 
    15179 1 model selected 
    15180 
    15181 > select add #2.157
    15182 
    15183 2 models selected 
    15184 
    15185 > select add #2.127
    15186 
    15187 3 models selected 
    15188 
    15189 > select subtract #2.157
    15190 
    15191 2 models selected 
    15192 Grouped 2 regions 
    15193 
    15194 > select add #2.157
    15195 
    15196 2 models selected 
    15197 Grouped 2 regions 
    15198 
    15199 > select add #2.282
    15200 
    15201 2 models selected 
    15202 
    15203 > select add #2.277
    15204 
    15205 3 models selected 
    15206 
    15207 > select add #2.26
    15208 
    15209 4 models selected 
    15210 Grouped 4 regions 
    15211 
    15212 > select #2.140
    15213 
    15214 1 model selected 
    15215 
    15216 > select add #2.26
    15217 
    15218 2 models selected 
    15219 Grouped 2 regions 
    15220 
    15221 > select #2.162
    15222 
    15223 1 model selected 
    15224 
    15225 > select add #2.26
    15226 
    15227 2 models selected 
    15228 Grouped 2 regions 
    15229 
    15230 > select #2.24
    15231 
    15232 1 model selected 
    15233 Ungrouped to 3 regions 
    15234 
    15235 > select #2.157
    15236 
    15237 1 model selected 
    15238 
    15239 > select add #2.140
    15240 
    15241 2 models selected 
    15242 Grouped 2 regions 
    15243 
    15244 > select add #2.26
    15245 
    15246 2 models selected 
    15247 Grouped 2 regions 
    15248 Opened Rev-CjpflAB-
    15249 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    15250 as #26, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    15251 float32 
    15252 
    15253 The cached device pixel ratio value was stale on window expose. Please file a
    15254 QTBUG which explains how to reproduce. 
    15255 
    15256 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    15257 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    15258 > segment_Aug2420204/Cage.mrc models #26
    15259 
    15260 Opened Rev-CjpflAB-
    15261 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    15262 as #27, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    15263 float32 
    15264 Segmenting Rev-CjpflAB-
    15265 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    15266 density threshold 0.003143 
    15267 Showing 254 region surfaces 
    15268 17052 watershed regions, grouped to 254 regions 
    15269 Showing Rev-CjpflAB-
    15270 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    15271 - 254 regions, 254 surfaces 
    15272 
    15273 > hide #!26 models
    15274 
    15275 > hide #!27 models
    15276 
    15277 > select #2.81
    15278 
    15279 1 model selected 
    15280 
    15281 > select #2.143
    15282 
    15283 1 model selected 
    15284 
    15285 > select add #2.147
    15286 
    15287 2 models selected 
    15288 
    15289 > select add #2.132
    15290 
    15291 3 models selected 
    15292 
    15293 > select subtract #2.132
    15294 
    15295 2 models selected 
    15296 
    15297 > select add #2.210
    15298 
    15299 3 models selected 
    15300 Grouped 3 regions 
    15301 
    15302 > select #2.81
    15303 
    15304 1 model selected 
    15305 
    15306 > select add #2.67
    15307 
    15308 2 models selected 
    15309 
    15310 > select add #2.75
    15311 
    15312 3 models selected 
    15313 
    15314 > select add #2.72
    15315 
    15316 4 models selected 
    15317 
    15318 > select add #2.143
    15319 
    15320 5 models selected 
    15321 
    15322 > select add #2.175
    15323 
    15324 6 models selected 
    15325 Grouped 6 regions 
    15326 
    15327 > select #2.70
    15328 
    15329 1 model selected 
    15330 
    15331 > select add #2.69
    15332 
    15333 2 models selected 
    15334 
    15335 > select add #2.163
    15336 
    15337 3 models selected 
    15338 Ungrouped to 8 regions 
    15339 Ungrouped to 28 regions 
    15340 Ungrouped to 85 regions 
    15341 Ungrouped to 41 regions 
    15342 
    15343 > select #2.67
    15344 
    15345 1 model selected 
    15346 
    15347 > select add #2.334
    15348 
    15349 2 models selected 
    15350 
    15351 > select add #2.333
    15352 
    15353 3 models selected 
    15354 
    15355 > select add #2.335
    15356 
    15357 4 models selected 
    15358 Grouped 4 regions 
    15359 
    15360 > select #2.205
    15361 
    15362 1 model selected 
    15363 
    15364 > select add #2.67
    15365 
    15366 2 models selected 
    15367 Grouped 2 regions 
    15368 
    15369 > select #2.132
    15370 
    15371 1 model selected 
    15372 Ungrouped to 10 regions 
    15373 Ungrouped to 31 regions 
    15374 
    15375 > select #2.391
    15376 
    15377 1 model selected 
    15378 
    15379 > select add #2.392
    15380 
    15381 2 models selected 
    15382 
    15383 > select add #2.340
    15384 
    15385 3 models selected 
    15386 
    15387 > select add #2.341
    15388 
    15389 4 models selected 
    15390 
    15391 > select add #2.405
    15392 
    15393 5 models selected 
    15394 Grouped 5 regions 
    15395 
    15396 > select add #2.4
    15397 
    15398 2 models selected 
    15399 
    15400 > select #2.205
    15401 
    15402 1 model selected 
    15403 
    15404 > select #2.205
    15405 
    15406 1 model selected 
    15407 
    15408 > select add #2.67
    15409 
    15410 2 models selected 
    15411 
    15412 > select add #2.404
    15413 
    15414 3 models selected 
    15415 Grouped 3 regions 
    15416 
    15417 > select #2.67
    15418 
    15419 1 model selected 
    15420 Ungrouped to 3 regions 
    15421 
    15422 > select #2.294
    15423 
    15424 1 model selected 
    15425 
    15426 > select add #2.205
    15427 
    15428 2 models selected 
    15429 Grouped 2 regions 
    15430 
    15431 > select #2.305
    15432 
    15433 1 model selected 
    15434 Ungrouped to 2 regions 
    15435 
    15436 > select #2.205
    15437 
    15438 1 model selected 
    15439 Ungrouped to 4 regions 
    15440 
    15441 > select #2.336
    15442 
    15443 1 model selected 
    15444 Ungrouped to 6 regions 
    15445 
    15446 > select #2.392
    15447 
    15448 1 model selected 
    15449 
    15450 > select add #2.305
    15451 
    15452 2 models selected 
    15453 
    15454 > select add #2.205
    15455 
    15456 3 models selected 
    15457 
    15458 > select #2.205
    15459 
    15460 1 model selected 
    15461 
    15462 > select #2.205
    15463 
    15464 1 model selected 
    15465 
    15466 > select #2.283
    15467 
    15468 1 model selected 
    15469 
    15470 > select add #2.284
    15471 
    15472 2 models selected 
    15473 
    15474 > select add #2.205
    15475 
    15476 3 models selected 
    15477 
    15478 > select subtract #2.205
    15479 
    15480 2 models selected 
    15481 
    15482 > select add #2.305
    15483 
    15484 3 models selected 
    15485 
    15486 > select add #2.392
    15487 
    15488 4 models selected 
    15489 
    15490 > select add #2.205
    15491 
    15492 5 models selected 
    15493 
    15494 > select add #2.5
    15495 
    15496 6 models selected 
    15497 
    15498 > select add #2.362
    15499 
    15500 7 models selected 
    15501 
    15502 > select subtract #2.362
    15503 
    15504 6 models selected 
    15505 
    15506 > select #2.205
    15507 
    15508 1 model selected 
    15509 
    15510 > select #2.5
    15511 
    15512 1 model selected 
    15513 
    15514 > select add #2.205
    15515 
    15516 2 models selected 
    15517 
    15518 > select #2.205
    15519 
    15520 1 model selected 
    15521 
    15522 > select #2.5
    15523 
    15524 1 model selected 
    15525 Ungrouped to 4 regions 
    15526 Ungrouped to 26 regions 
    15527 
    15528 > select #2.417
    15529 
    15530 1 model selected 
    15531 
    15532 > select #2.205
    15533 
    15534 1 model selected 
    15535 
    15536 > select add #2.417
    15537 
    15538 2 models selected 
    15539 
    15540 > select add #2.421
    15541 
    15542 3 models selected 
    15543 Grouped 3 regions 
    15544 
    15545 > select #2.256
    15546 
    15547 1 model selected 
    15548 
    15549 > select add #2.314
    15550 
    15551 2 models selected 
    15552 
    15553 > select subtract #2.314
    15554 
    15555 1 model selected 
    15556 
    15557 > select add #2.205
    15558 
    15559 2 models selected 
    15560 
    15561 > select add #2.392
    15562 
    15563 3 models selected 
    15564 Grouped 3 regions 
    15565 
    15566 > select #2.340
    15567 
    15568 1 model selected 
    15569 
    15570 > select #2.284
    15571 
    15572 1 model selected 
    15573 
    15574 > select add #2.205
    15575 
    15576 2 models selected 
    15577 
    15578 > select #2.39
    15579 
    15580 1 model selected 
    15581 
    15582 > select #2.57
    15583 
    15584 1 model selected 
    15585 
    15586 > select add #2.39
    15587 
    15588 2 models selected 
    15589 
    15590 > select add #2.60
    15591 
    15592 3 models selected 
    15593 
    15594 > select add #2.174
    15595 
    15596 4 models selected 
    15597 
    15598 > select add #2.95
    15599 
    15600 5 models selected 
    15601 
    15602 > select add #2.44
    15603 
    15604 6 models selected 
    15605 
    15606 > select add #2.176
    15607 
    15608 7 models selected 
    15609 
    15610 > select add #2.66
    15611 
    15612 8 models selected 
    15613 
    15614 > select add #2.55
    15615 
    15616 9 models selected 
    15617 
    15618 > select add #2.202
    15619 
    15620 10 models selected 
    15621 
    15622 > select add #2.37
    15623 
    15624 11 models selected 
    15625 
    15626 > select add #2.261
    15627 
    15628 12 models selected 
    15629 
    15630 > select add #2.372
    15631 
    15632 13 models selected 
    15633 
    15634 > select add #2.374
    15635 
    15636 14 models selected 
    15637 
    15638 > select add #2.371
    15639 
    15640 15 models selected 
    15641 
    15642 > select add #2.376
    15643 
    15644 16 models selected 
    15645 
    15646 > select add #2.260
    15647 
    15648 17 models selected 
    15649 
    15650 > select subtract #2.374
    15651 
    15652 16 models selected 
    15653 
    15654 The cached device pixel ratio value was stale on window expose. Please file a
    15655 QTBUG which explains how to reproduce. 
    15656 
    15657 > select add #2.353
    15658 
    15659 17 models selected 
    15660 
    15661 > select add #2.361
    15662 
    15663 18 models selected 
    15664 
    15665 > select add #2.360
    15666 
    15667 19 models selected 
    15668 
    15669 > select add #2.375
    15670 
    15671 20 models selected 
    15672 
    15673 > select add #2.377
    15674 
    15675 21 models selected 
    15676 
    15677 > select add #2.295
    15678 
    15679 22 models selected 
    15680 
    15681 > select add #2.293
    15682 
    15683 23 models selected 
    15684 
    15685 > select add #2.262
    15686 
    15687 24 models selected 
    15688 
    15689 > select add #2.358
    15690 
    15691 25 models selected 
    15692 
    15693 > select add #2.271
    15694 
    15695 26 models selected 
    15696 
    15697 > select add #2.265
    15698 
    15699 27 models selected 
    15700 
    15701 > select add #2.264
    15702 
    15703 28 models selected 
    15704 
    15705 > select add #2.351
    15706 
    15707 29 models selected 
    15708 
    15709 > select add #2.373
    15710 
    15711 30 models selected 
    15712 
    15713 > select add #2.374
    15714 
    15715 31 models selected 
    15716 
    15717 > select add #2.370
    15718 
    15719 32 models selected 
    15720 
    15721 > select add #2.366
    15722 
    15723 33 models selected 
    15724 
    15725 > select add #2.367
    15726 
    15727 34 models selected 
    15728 
    15729 > select add #2.272
    15730 
    15731 35 models selected 
    15732 
    15733 > select add #2.337
    15734 
    15735 36 models selected 
    15736 
    15737 > select add #2.355
    15738 
    15739 37 models selected 
    15740 
    15741 > select add #2.363
    15742 
    15743 38 models selected 
    15744 
    15745 > select add #2.365
    15746 
    15747 39 models selected 
    15748 
    15749 > select add #2.310
    15750 
    15751 40 models selected 
    15752 
    15753 > select add #2.274
    15754 
    15755 41 models selected 
    15756 
    15757 > select add #2.311
    15758 
    15759 42 models selected 
    15760 
    15761 > select add #2.307
    15762 
    15763 43 models selected 
    15764 
    15765 > select add #2.259
    15766 
    15767 44 models selected 
    15768 
    15769 > select add #2.69
    15770 
    15771 45 models selected 
    15772 Grouped 45 regions 
    15773 
    15774 > select add #2.352
    15775 
    15776 2 models selected 
    15777 Grouped 2 regions 
    15778 
    15779 > select add #2.316
    15780 
    15781 2 models selected 
    15782 
    15783 > select add #2.325
    15784 
    15785 3 models selected 
    15786 
    15787 > select add #2.290
    15788 
    15789 4 models selected 
    15790 
    15791 > select add #2.322
    15792 
    15793 5 models selected 
    15794 
    15795 > select add #2.329
    15796 
    15797 6 models selected 
    15798 
    15799 > select add #2.287
    15800 
    15801 7 models selected 
    15802 
    15803 > select add #2.289
    15804 
    15805 8 models selected 
    15806 
    15807 > select add #2.285
    15808 
    15809 9 models selected 
    15810 
    15811 > select add #2.288
    15812 
    15813 10 models selected 
    15814 
    15815 > select add #2.323
    15816 
    15817 11 models selected 
    15818 
    15819 > select add #2.292
    15820 
    15821 12 models selected 
    15822 
    15823 > select add #2.344
    15824 
    15825 13 models selected 
    15826 
    15827 > select add #2.347
    15828 
    15829 14 models selected 
    15830 
    15831 > select add #2.345
    15832 
    15833 15 models selected 
    15834 
    15835 > select add #2.327
    15836 
    15837 16 models selected 
    15838 
    15839 > select add #2.324
    15840 
    15841 17 models selected 
    15842 
    15843 > select add #2.326
    15844 
    15845 18 models selected 
    15846 
    15847 > select add #2.328
    15848 
    15849 19 models selected 
    15850 
    15851 > select add #2.346
    15852 
    15853 20 models selected 
    15854 
    15855 > select add #2.301
    15856 
    15857 21 models selected 
    15858 
    15859 > select add #2.282
    15860 
    15861 22 models selected 
    15862 
    15863 > select add #2.281
    15864 
    15865 23 models selected 
    15866 
    15867 > select add #2.304
    15868 
    15869 24 models selected 
    15870 
    15871 > select add #2.315
    15872 
    15873 25 models selected 
    15874 
    15875 > select add #2.317
    15876 
    15877 26 models selected 
    15878 
    15879 > select add #2.319
    15880 
    15881 27 models selected 
    15882 
    15883 > select add #2.343
    15884 
    15885 28 models selected 
    15886 
    15887 > select add #2.303
    15888 
    15889 29 models selected 
    15890 
    15891 > select add #2.318
    15892 
    15893 30 models selected 
    15894 
    15895 > select add #2.302
    15896 
    15897 31 models selected 
    15898 
    15899 > select add #2.210
    15900 
    15901 32 models selected 
    15902 
    15903 > select add #2.348
    15904 
    15905 33 models selected 
    15906 
    15907 > select add #2.350
    15908 
    15909 34 models selected 
    15910 
    15911 > select add #2.300
    15912 
    15913 35 models selected 
    15914 
    15915 > select add #2.320
    15916 
    15917 36 models selected 
    15918 
    15919 > select add #2.273
    15920 
    15921 37 models selected 
    15922 
    15923 > select add #2.70
    15924 
    15925 38 models selected 
    15926 Grouped 38 regions 
    15927 
    15928 > select add #2.390
    15929 
    15930 2 models selected 
    15931 
    15932 > select add #2.389
    15933 
    15934 3 models selected 
    15935 
    15936 > select add #2.335
    15937 
    15938 4 models selected 
    15939 
    15940 > select add #2.401
    15941 
    15942 5 models selected 
    15943 
    15944 > select add #2.395
    15945 
    15946 6 models selected 
    15947 
    15948 > select add #2.388
    15949 
    15950 7 models selected 
    15951 
    15952 > select add #2.334
    15953 
    15954 8 models selected 
    15955 
    15956 > select add #2.384
    15957 
    15958 9 models selected 
    15959 
    15960 > select add #2.385
    15961 
    15962 10 models selected 
    15963 
    15964 > select add #2.397
    15965 
    15966 11 models selected 
    15967 
    15968 > select add #2.386
    15969 
    15970 12 models selected 
    15971 
    15972 > select add #2.381
    15973 
    15974 13 models selected 
    15975 
    15976 > select add #2.357
    15977 
    15978 14 models selected 
    15979 
    15980 > select add #2.75
    15981 
    15982 15 models selected 
    15983 
    15984 > select add #2.283
    15985 
    15986 16 models selected 
    15987 
    15988 > select add #2.258
    15989 
    15990 17 models selected 
    15991 
    15992 > select add #2.81
    15993 
    15994 18 models selected 
    15995 
    15996 > select add #2.356
    15997 
    15998 19 models selected 
    15999 
    16000 > select add #2.396
    16001 
    16002 20 models selected 
    16003 
    16004 > select add #2.398
    16005 
    16006 21 models selected 
    16007 
    16008 > select add #2.382
    16009 
    16010 22 models selected 
    16011 
    16012 > select add #2.255
    16013 
    16014 23 models selected 
    16015 
    16016 > select add #2.387
    16017 
    16018 24 models selected 
    16019 
    16020 > select add #2.333
    16021 
    16022 25 models selected 
    16023 
    16024 > select add #2.403
    16025 
    16026 26 models selected 
    16027 
    16028 > select add #2.297
    16029 
    16030 27 models selected 
    16031 
    16032 > select add #2.299
    16033 
    16034 28 models selected 
    16035 
    16036 > select add #2.400
    16037 
    16038 29 models selected 
    16039 
    16040 > select add #2.132
    16041 
    16042 30 models selected 
    16043 
    16044 > select add #2.280
    16045 
    16046 31 models selected 
    16047 
    16048 > select add #2.399
    16049 
    16050 32 models selected 
    16051 
    16052 > select add #2.383
    16053 
    16054 33 models selected 
    16055 
    16056 > select add #2.298
    16057 
    16058 34 models selected 
    16059 
    16060 > select add #2.175
    16061 
    16062 35 models selected 
    16063 
    16064 > select add #2.313
    16065 
    16066 36 models selected 
    16067 
    16068 > select add #2.278
    16069 
    16070 37 models selected 
    16071 
    16072 > select add #2.284
    16073 
    16074 38 models selected 
    16075 
    16076 > select add #2.312
    16077 
    16078 39 models selected 
    16079 
    16080 > select add #2.402
    16081 
    16082 40 models selected 
    16083 Grouped 40 regions 
    16084 
    16085 > select #2.68
    16086 
    16087 1 model selected 
    16088 Ungrouped to 3 regions 
    16089 
    16090 > select #2.55
    16091 
    16092 1 model selected 
    16093 
    16094 > select add #2.39
    16095 
    16096 2 models selected 
    16097 
    16098 > select #2.39
    16099 
    16100 1 model selected 
    16101 Ungrouped to 7 regions 
    16102 
    16103 > select #2.68
    16104 
    16105 1 model selected 
    16106 
    16107 > select add #2.66
    16108 
    16109 2 models selected 
    16110 
    16111 > select add #2.69
    16112 
    16113 3 models selected 
    16114 
    16115 > select add #2.216
    16116 
    16117 4 models selected 
    16118 
    16119 > select add #2.55
    16120 
    16121 5 models selected 
    16122 
    16123 > select subtract #2.216
    16124 
    16125 4 models selected 
    16126 
    16127 > select add #2.75
    16128 
    16129 5 models selected 
    16130 Showing 311 region surfaces 
    16131 
    16132 > select add #2.37
    16133 
    16134 6 models selected 
    16135 Grouped 6 regions 
    16136 
    16137 > select #2.44
    16138 
    16139 1 model selected 
    16140 Ungrouped to 3 regions 
    16141 Ungrouped to 10 regions 
    16142 
    16143 > select #2.174
    16144 
    16145 1 model selected 
    16146 
    16147 > select add #2.176
    16148 
    16149 2 models selected 
    16150 
    16151 > select add #2.81
    16152 
    16153 3 models selected 
    16154 
    16155 > select add #2.95
    16156 
    16157 4 models selected 
    16158 
    16159 > select add #2.132
    16160 
    16161 5 models selected 
    16162 
    16163 > select add #2.44
    16164 
    16165 6 models selected 
    16166 Grouped 6 regions 
    16167 Showing 310 region surfaces 
    16168 
    16169 > select add #2.37
    16170 
    16171 2 models selected 
    16172 Grouped 2 regions 
    16173 
    16174 > view orient
    16175 
    16176 > select clear
    16177 
    16178 > select #2.37
    16179 
    16180 1 model selected 
    16181 
    16182 > view sel
    16183 
    16184 No displayed objects specified. 
    16185 
    16186 > ui tool show "Side View"
    16187 
    16188 Opened Rev-CjpflAB-
    16189 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    16190 as #28, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    16191 float32 
    16192 
    16193 The cached device pixel ratio value was stale on window expose. Please file a
    16194 QTBUG which explains how to reproduce. 
    16195 
    16196 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    16197 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    16198 > segment_Aug2420204/PflB-cage.mrc models #28
    16199 
    16200 Opened Rev-CjpflAB-
    16201 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    16202 as #29, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    16203 float32 
    16204 Segmenting Rev-CjpflAB-
    16205 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    16206 density threshold 0.003143 
    16207 Showing 238 region surfaces 
    16208 16400 watershed regions, grouped to 238 regions 
    16209 Showing Rev-CjpflAB-
    16210 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    16211 - 238 regions, 238 surfaces 
    16212 
    16213 > hide #!28 models
    16214 
    16215 > hide #!29 models
    16216 
    16217 > select #2.54
    16218 
    16219 1 model selected 
    16220 
    16221 > select add #2.109
    16222 
    16223 2 models selected 
    16224 
    16225 > select add #2.5
    16226 
    16227 3 models selected 
    16228 
    16229 > select #2.5
    16230 
    16231 1 model selected 
    16232 Ungrouped to 4 regions 
    16233 
    16234 > select #2.239
    16235 
    16236 1 model selected 
    16237 Ungrouped to 10 regions 
    16238 
    16239 > select #2.246
    16240 
    16241 1 model selected 
    16242 
    16243 > select add #2.250
    16244 
    16245 2 models selected 
    16246 
    16247 > select add #2.54
    16248 
    16249 3 models selected 
    16250 
    16251 > select add #2.109
    16252 
    16253 4 models selected 
    16254 Grouped 4 regions 
    16255 
    16256 > select #2.108
    16257 
    16258 1 model selected 
    16259 Ungrouped to 3 regions 
    16260 
    16261 > select #2.246
    16262 
    16263 1 model selected 
    16264 Ungrouped to 11 regions 
    16265 
    16266 > select #2.257
    16267 
    16268 1 model selected 
    16269 Ungrouped to 0 regions 
    16270 
    16271 > select #2.54
    16272 
    16273 1 model selected 
    16274 
    16275 > select add #2.257
    16276 
    16277 2 models selected 
    16278 
    16279 > select #2.54
    16280 
    16281 1 model selected 
    16282 
    16283 > select add #2.57
    16284 
    16285 2 models selected 
    16286 
    16287 > select add #2.117
    16288 
    16289 3 models selected 
    16290 Grouped 3 regions 
    16291 
    16292 > select #2.3
    16293 
    16294 1 model selected 
    16295 Ungrouped to 2 regions 
    16296 
    16297 > select #2.57
    16298 
    16299 1 model selected 
    16300 Ungrouped to 11 regions 
    16301 
    16302 > select #2.263
    16303 
    16304 1 model selected 
    16305 
    16306 > select add #2.54
    16307 
    16308 2 models selected 
    16309 Grouped 2 regions 
    16310 
    16311 > select #2.239
    16312 
    16313 1 model selected 
    16314 Ungrouped to 10 regions 
    16315 
    16316 > select #2.277
    16317 
    16318 1 model selected 
    16319 Ungrouped to 3 regions 
    16320 
    16321 > select #2.279
    16322 
    16323 1 model selected 
    16324 
    16325 > select add #2.239
    16326 
    16327 2 models selected 
    16328 
    16329 > select add #2.54
    16330 
    16331 3 models selected 
    16332 Grouped 3 regions 
    16333 
    16334 > select #2.179
    16335 
    16336 1 model selected 
    16337 
    16338 > select add #2.191
    16339 
    16340 2 models selected 
    16341 
    16342 > select add #2.52
    16343 
    16344 3 models selected 
    16345 Grouped 3 regions 
    16346 
    16347 > select #2.4
    16348 
    16349 1 model selected 
    16350 Ungrouped to 2 regions 
    16351 
    16352 > select #2.191
    16353 
    16354 1 model selected 
    16355 Ungrouped to 23 regions 
    16356 
    16357 > select #2.294
    16358 
    16359 1 model selected 
    16360 
    16361 > select add #2.52
    16362 
    16363 2 models selected 
    16364 
    16365 > select subtract #2.52
    16366 
    16367 1 model selected 
    16368 Grouped 1 regions 
    16369 
    16370 > select add #2.280
    16371 
    16372 2 models selected 
    16373 
    16374 > select add #2.52
    16375 
    16376 3 models selected 
    16377 Grouped 3 regions 
    16378 
    16379 > select #2.286
    16380 
    16381 1 model selected 
    16382 
    16383 > select add #2.52
    16384 
    16385 2 models selected 
    16386 Grouped 2 regions 
    16387 
    16388 > select #2.282
    16389 
    16390 1 model selected 
    16391 Ungrouped to 4 regions 
    16392 Ungrouped to 6 regions 
    16393 Ungrouped to 0 regions 
    16394 
    16395 > select #2.52
    16396 
    16397 1 model selected 
    16398 
    16399 > select add #2.286
    16400 
    16401 2 models selected 
    16402 
    16403 > select add #2.191
    16404 
    16405 3 models selected 
    16406 
    16407 > select subtract #2.286
    16408 
    16409 2 models selected 
    16410 Grouped 2 regions 
    16411 
    16412 > select add #2.54
    16413 
    16414 2 models selected 
    16415 Grouped 2 regions 
    16416 
    16417 > select add #2.63
    16418 
    16419 2 models selected 
    16420 
    16421 > select #2.52
    16422 
    16423 1 model selected 
    16424 Opened Rev-CjpflAB-
    16425 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    16426 as #30, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    16427 float32 
    16428 
    16429 The cached device pixel ratio value was stale on window expose. Please file a
    16430 QTBUG which explains how to reproduce. 
    16431 
    16432 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    16433 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    16434 > segment_Aug2420204/FliL.mrc models #30
    16435 
    16436 Opened Rev-CjpflAB-
    16437 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    16438 as #31, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    16439 float32 
    16440 Segmenting Rev-CjpflAB-
    16441 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    16442 density threshold 0.003143 
    16443 Showing 231 region surfaces 
    16444 16015 watershed regions, grouped to 231 regions 
    16445 Showing Rev-CjpflAB-
    16446 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    16447 - 231 regions, 231 surfaces 
    16448 
    16449 > hide #!30 models
    16450 
    16451 > hide #!31 models
    16452 
    16453 > select #2.14
    16454 
    16455 1 model selected 
    16456 
    16457 > select add #2.36
    16458 
    16459 2 models selected 
    16460 
    16461 > select add #2.169
    16462 
    16463 3 models selected 
    16464 
    16465 > select add #2.67
    16466 
    16467 4 models selected 
    16468 
    16469 > select add #2.78
    16470 
    16471 5 models selected 
    16472 
    16473 > select add #2.159
    16474 
    16475 6 models selected 
    16476 
    16477 > select add #2.156
    16478 
    16479 7 models selected 
    16480 
    16481 > select add #2.37
    16482 
    16483 8 models selected 
    16484 
    16485 > select add #2.60
    16486 
    16487 9 models selected 
    16488 
    16489 > select add #2.199
    16490 
    16491 10 models selected 
    16492 
    16493 > select add #2.88
    16494 
    16495 11 models selected 
    16496 
    16497 > select add #2.151
    16498 
    16499 12 models selected 
    16500 
    16501 > select subtract #2.151
    16502 
    16503 11 models selected 
    16504 
    16505 > select add #2.134
    16506 
    16507 12 models selected 
    16508 
    16509 > select add #2.151
    16510 
    16511 13 models selected 
    16512 
    16513 > select add #2.135
    16514 
    16515 14 models selected 
    16516 
    16517 > select add #2.196
    16518 
    16519 15 models selected 
    16520 
    16521 > select add #2.174
    16522 
    16523 16 models selected 
    16524 
    16525 > select add #2.2
    16526 
    16527 17 models selected 
    16528 
    16529 > select subtract #2.2
    16530 
    16531 16 models selected 
    16532 Drag select of 20552, 20028, 21571, 21632, 21121, 244 of 292 triangles, 21566,
    16533 21499, 20373, 28 of 256 triangles, 16012, 15965 
    16534 Drag select of 21694, 124 of 23904 triangles 
    16535 
    16536 > select subtract #2.93
    16537 
    16538 26 models selected 
    16539 
    16540 > select add #2.193
    16541 
    16542 27 models selected 
    16543 
    16544 The cached device pixel ratio value was stale on window expose. Please file a
    16545 QTBUG which explains how to reproduce. 
    16546 
    16547 > select subtract #2.193
    16548 
    16549 26 models selected 
    16550 Grouped 26 regions 
    16551 
    16552 > select #2.193
    16553 
    16554 1 model selected 
    16555 Ungrouped to 4 regions 
    16556 
    16557 > select clear
    16558 
    16559 > select #2.36
    16560 
    16561 1 model selected 
    16562 
    16563 > select add #2.14
    16564 
    16565 2 models selected 
    16566 
    16567 > select subtract #2.14
    16568 
    16569 1 model selected 
    16570 
    16571 > select add #2.14
    16572 
    16573 2 models selected 
    16574 Grouped 2 regions 
    16575 
    16576 > select #2.10
    16577 
    16578 1 model selected 
    16579 
    16580 > select add #2.14
    16581 
    16582 2 models selected 
    16583 
    16584 > select #2.2
    16585 
    16586 1 model selected 
    16587 
    16588 > select add #2.10
    16589 
    16590 2 models selected 
    16591 Ungrouped to 6 regions 
    16592 Ungrouped to 44 regions 
    16593 
    16594 > select #2.14
    16595 
    16596 1 model selected 
    16597 
    16598 > select add #2.219
    16599 
    16600 2 models selected 
    16601 
    16602 > select add #2.248
    16603 
    16604 3 models selected 
    16605 
    16606 > select add #2.245
    16607 
    16608 4 models selected 
    16609 
    16610 > select subtract #2.245
    16611 
    16612 3 models selected 
    16613 
    16614 > select add #2.231
    16615 
    16616 4 models selected 
    16617 
    16618 > select add #2.245
    16619 
    16620 5 models selected 
    16621 
    16622 > select subtract #2.231
    16623 
    16624 4 models selected 
    16625 
    16626 > select subtract #2.245
    16627 
    16628 3 models selected 
    16629 Opened Rev-CjpflAB-
    16630 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    16631 as #32, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    16632 float32 
    16633 Segmenting Rev-CjpflAB-
    16634 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    16635 density threshold 0.003143 
    16636 Showing 205 region surfaces 
    16637 15312 watershed regions, grouped to 205 regions 
    16638 Showing Rev-CjpflAB-
    16639 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    16640 - 205 regions, 205 surfaces 
    16641 
    16642 > select add #2.99
    16643 
    16644 1 model selected 
    16645 
    16646 > select add #2.87
    16647 
    16648 2 models selected 
    16649 
    16650 > select add #2.122
    16651 
    16652 3 models selected 
    16653 
    16654 > select add #2.127
    16655 
    16656 4 models selected 
    16657 
    16658 > select add #2.142
    16659 
    16660 5 models selected 
    16661 
    16662 > select add #2.156
    16663 
    16664 6 models selected 
    16665 
    16666 > select add #2.124
    16667 
    16668 7 models selected 
    16669 
    16670 > select add #2.67
    16671 
    16672 8 models selected 
    16673 
    16674 > select add #2.114
    16675 
    16676 9 models selected 
    16677 
    16678 > select add #2.49
    16679 
    16680 10 models selected 
    16681 
    16682 > select add #2.107
    16683 
    16684 11 models selected 
    16685 
    16686 > select add #2.128
    16687 
    16688 12 models selected 
    16689 
    16690 > select add #2.157
    16691 
    16692 13 models selected 
    16693 
    16694 > select add #2.175
    16695 
    16696 14 models selected 
    16697 
    16698 > select add #2.126
    16699 
    16700 15 models selected 
    16701 
    16702 > select add #2.133
    16703 
    16704 16 models selected 
    16705 
    16706 > select add #2.144
    16707 
    16708 17 models selected 
    16709 
    16710 > select add #2.131
    16711 
    16712 18 models selected 
    16713 
    16714 > select add #2.136
    16715 
    16716 19 models selected 
    16717 
    16718 > select add #2.161
    16719 
    16720 20 models selected 
    16721 
    16722 > select add #2.105
    16723 
    16724 21 models selected 
    16725 
    16726 > select add #2.162
    16727 
    16728 22 models selected 
    16729 
    16730 > select add #2.165
    16731 
    16732 23 models selected 
    16733 
    16734 > select add #2.154
    16735 
    16736 24 models selected 
    16737 
    16738 > select add #2.85
    16739 
    16740 25 models selected 
    16741 
    16742 > select add #2.84
    16743 
    16744 26 models selected 
    16745 
    16746 > select add #2.120
    16747 
    16748 27 models selected 
    16749 
    16750 > select add #2.94
    16751 
    16752 28 models selected 
    16753 
    16754 > select add #2.130
    16755 
    16756 29 models selected 
    16757 
    16758 > select add #2.163
    16759 
    16760 30 models selected 
    16761 
    16762 > select add #2.21
    16763 
    16764 31 models selected 
    16765 
    16766 > select add #2.18
    16767 
    16768 32 models selected 
    16769 
    16770 > select add #2.174
    16771 
    16772 33 models selected 
    16773 
    16774 > select add #2.17
    16775 
    16776 34 models selected 
    16777 
    16778 > select add #2.11
    16779 
    16780 35 models selected 
    16781 
    16782 > select add #2.14
    16783 
    16784 36 models selected 
    16785 
    16786 > select add #2.12
    16787 
    16788 37 models selected 
    16789 
    16790 > select add #2.115
    16791 
    16792 38 models selected 
    16793 
    16794 > select add #2.132
    16795 
    16796 39 models selected 
    16797 
    16798 > select add #2.159
    16799 
    16800 40 models selected 
    16801 
    16802 > hide #!32 models
    16803 
    16804 > select add #2.112
    16805 
    16806 41 models selected 
    16807 
    16808 > select add #2.147
    16809 
    16810 42 models selected 
    16811 
    16812 > select add #2.96
    16813 
    16814 43 models selected 
    16815 
    16816 > select add #2.36
    16817 
    16818 44 models selected 
    16819 
    16820 > select add #2.76
    16821 
    16822 45 models selected 
    16823 
    16824 > select add #2.81
    16825 
    16826 46 models selected 
    16827 
    16828 > select add #2.103
    16829 
    16830 47 models selected 
    16831 
    16832 > select add #2.71
    16833 
    16834 48 models selected 
    16835 
    16836 > select add #2.56
    16837 
    16838 49 models selected 
    16839 
    16840 > select add #2.92
    16841 
    16842 50 models selected 
    16843 
    16844 > select add #2.43
    16845 
    16846 51 models selected 
    16847 
    16848 > select #2.99
    16849 
    16850 1 model selected 
    16851 
    16852 > select #2.99
    16853 
    16854 1 model selected 
    16855 
    16856 > select add #2.87
    16857 
    16858 2 models selected 
    16859 
    16860 > select add #2.122
    16861 
    16862 3 models selected 
    16863 
    16864 > select add #2.127
    16865 
    16866 4 models selected 
    16867 
    16868 > select add #2.142
    16869 
    16870 5 models selected 
    16871 
    16872 > select add #2.156
    16873 
    16874 6 models selected 
    16875 
    16876 > select add #2.124
    16877 
    16878 7 models selected 
    16879 
    16880 > select add #2.67
    16881 
    16882 8 models selected 
    16883 
    16884 > select add #2.114
    16885 
    16886 9 models selected 
    16887 
    16888 > select add #2.49
    16889 
    16890 10 models selected 
    16891 
    16892 > select add #2.107
    16893 
    16894 11 models selected 
    16895 
    16896 > select add #2.128
    16897 
    16898 12 models selected 
    16899 
    16900 > select add #2.157
    16901 
    16902 13 models selected 
    16903 
    16904 > select add #2.175
    16905 
    16906 14 models selected 
    16907 
    16908 > select add #2.126
    16909 
    16910 15 models selected 
    16911 
    16912 > select add #2.133
    16913 
    16914 16 models selected 
    16915 
    16916 > select add #2.144
    16917 
    16918 17 models selected 
    16919 
    16920 > select add #2.131
    16921 
    16922 18 models selected 
    16923 
    16924 > select add #2.136
    16925 
    16926 19 models selected 
    16927 
    16928 > select add #2.161
    16929 
    16930 20 models selected 
    16931 
    16932 > select add #2.105
    16933 
    16934 21 models selected 
    16935 
    16936 > select add #2.162
    16937 
    16938 22 models selected 
    16939 
    16940 > select add #2.165
    16941 
    16942 23 models selected 
    16943 
    16944 > select add #2.154
    16945 
    16946 24 models selected 
    16947 
    16948 > select add #2.85
    16949 
    16950 25 models selected 
    16951 
    16952 > select add #2.84
    16953 
    16954 26 models selected 
    16955 
    16956 > select add #2.120
    16957 
    16958 27 models selected 
    16959 
    16960 > select add #2.94
    16961 
    16962 28 models selected 
    16963 
    16964 > select add #2.163
    16965 
    16966 29 models selected 
    16967 
    16968 > select add #2.130
    16969 
    16970 30 models selected 
    16971 
    16972 > select add #2.21
    16973 
    16974 31 models selected 
    16975 
    16976 > select add #2.18
    16977 
    16978 32 models selected 
    16979 
    16980 > select add #2.174
    16981 
    16982 33 models selected 
    16983 
    16984 > select add #2.17
    16985 
    16986 34 models selected 
    16987 
    16988 > select add #2.11
    16989 
    16990 35 models selected 
    16991 
    16992 > select add #2.14
    16993 
    16994 36 models selected 
    16995 
    16996 > select add #2.12
    16997 
    16998 37 models selected 
    16999 
    17000 > select subtract #2.12
    17001 
    17002 36 models selected 
    17003 
    17004 > select add #2.12
    17005 
    17006 37 models selected 
    17007 
    17008 > select add #2.115
    17009 
    17010 38 models selected 
    17011 
    17012 > select add #2.132
    17013 
    17014 39 models selected 
    17015 
    17016 > select add #2.159
    17017 
    17018 40 models selected 
    17019 Grouped 40 regions 
    17020 
    17021 > select #2.11
    17022 
    17023 1 model selected 
    17024 
    17025 > select #2.56
    17026 
    17027 1 model selected 
    17028 
    17029 > select add #2.92
    17030 
    17031 2 models selected 
    17032 
    17033 > select add #2.68
    17034 
    17035 3 models selected 
    17036 
    17037 > select add #2.118
    17038 
    17039 4 models selected 
    17040 
    17041 > select add #2.63
    17042 
    17043 5 models selected 
    17044 
    17045 > select add #2.91
    17046 
    17047 6 models selected 
    17048 Grouped 6 regions 
    17049 
    17050 > select #2.184
    17051 
    17052 1 model selected 
    17053 
    17054 > select add #2.103
    17055 
    17056 2 models selected 
    17057 
    17058 > select add #2.198
    17059 
    17060 3 models selected 
    17061 
    17062 > select add #2.185
    17063 
    17064 4 models selected 
    17065 
    17066 > select add #2.197
    17067 
    17068 5 models selected 
    17069 
    17070 > select add #2.195
    17071 
    17072 6 models selected 
    17073 
    17074 > select add #2.76
    17075 
    17076 7 models selected 
    17077 
    17078 > select add #2.112
    17079 
    17080 8 models selected 
    17081 
    17082 > select add #2.147
    17083 
    17084 9 models selected 
    17085 
    17086 > select add #2.96
    17087 
    17088 10 models selected 
    17089 
    17090 > select add #2.12
    17091 
    17092 11 models selected 
    17093 Grouped 11 regions 
    17094 
    17095 > select #2.81
    17096 
    17097 1 model selected 
    17098 
    17099 > select add #2.12
    17100 
    17101 2 models selected 
    17102 Showing 151 region surfaces 
    17103 
    17104 > select add #2.11
    17105 
    17106 3 models selected 
    17107 Grouped 3 regions 
    17108 
    17109 > select #2.43
    17110 
    17111 1 model selected 
    17112 
    17113 > select add #2.31
    17114 
    17115 2 models selected 
    17116 Ungrouped to 4 regions 
    17117 
    17118 > select #2.12
    17119 
    17120 1 model selected 
    17121 
    17122 > select add #2.18
    17123 
    17124 2 models selected 
    17125 
    17126 > select subtract #2.18
    17127 
    17128 1 model selected 
    17129 
    17130 > select #2.71
    17131 
    17132 1 model selected 
    17133 Ungrouped to 2 regions 
    17134 Ungrouped to 18 regions 
    17135 
    17136 > select #2.99
    17137 
    17138 1 model selected 
    17139 
    17140 > select add #2.103
    17141 
    17142 2 models selected 
    17143 
    17144 > select add #2.94
    17145 
    17146 3 models selected 
    17147 
    17148 > select add #2.68
    17149 
    17150 4 models selected 
    17151 
    17152 > select add #2.43
    17153 
    17154 5 models selected 
    17155 
    17156 > select add #2.91
    17157 
    17158 6 models selected 
    17159 
    17160 > select add #2.63
    17161 
    17162 7 models selected 
    17163 
    17164 > select add #2.92
    17165 
    17166 8 models selected 
    17167 
    17168 > select add #2.87
    17169 
    17170 9 models selected 
    17171 
    17172 > select add #2.85
    17173 
    17174 10 models selected 
    17175 
    17176 > select add #2.67
    17177 
    17178 11 models selected 
    17179 
    17180 > select subtract #2.67
    17181 
    17182 10 models selected 
    17183 
    17184 > select add #2.56
    17185 
    17186 11 models selected 
    17187 
    17188 > select add #2.84
    17189 
    17190 12 models selected 
    17191 
    17192 > select add #2.49
    17193 
    17194 13 models selected 
    17195 
    17196 > select add #2.71
    17197 
    17198 14 models selected 
    17199 
    17200 > select add #2.12
    17201 
    17202 15 models selected 
    17203 
    17204 > select add #2.67
    17205 
    17206 16 models selected 
    17207 
    17208 > select add #2.81
    17209 
    17210 17 models selected 
    17211 Grouped 17 regions 
    17212 
    17213 > select #2.36
    17214 
    17215 1 model selected 
    17216 Ungrouped to 4 regions 
    17217 
    17218 > select #2.43
    17219 
    17220 1 model selected 
    17221 
    17222 > select add #2.49
    17223 
    17224 2 models selected 
    17225 
    17226 > select add #2.12
    17227 
    17228 3 models selected 
    17229 Grouped 3 regions 
    17230 
    17231 > select #2.39
    17232 
    17233 1 model selected 
    17234 
    17235 > select add #2.41
    17236 
    17237 2 models selected 
    17238 Ungrouped to 4 regions 
    17239 
    17240 > select #2.36
    17241 
    17242 1 model selected 
    17243 
    17244 > select add #2.56
    17245 
    17246 2 models selected 
    17247 Ungrouped to 15 regions 
    17248 
    17249 > select #2.39
    17250 
    17251 1 model selected 
    17252 
    17253 > select add #2.41
    17254 
    17255 2 models selected 
    17256 
    17257 > select add #2.68
    17258 
    17259 3 models selected 
    17260 
    17261 > select add #2.94
    17262 
    17263 4 models selected 
    17264 
    17265 > select add #2.85
    17266 
    17267 5 models selected 
    17268 
    17269 > select add #2.91
    17270 
    17271 6 models selected 
    17272 
    17273 > select add #2.87
    17274 
    17275 7 models selected 
    17276 
    17277 > select add #2.84
    17278 
    17279 8 models selected 
    17280 
    17281 > select add #2.12
    17282 
    17283 9 models selected 
    17284 Grouped 9 regions 
    17285 
    17286 > select #2.40
    17287 
    17288 1 model selected 
    17289 
    17290 > select add #2.37
    17291 
    17292 2 models selected 
    17293 Ungrouped to 6 regions 
    17294 Ungrouped to 39 regions 
    17295 
    17296 > select #2.142
    17297 
    17298 1 model selected 
    17299 
    17300 > select subtract #2.142
    17301 
    17302 Nothing selected 
    17303 
    17304 > select add #2.136
    17305 
    17306 1 model selected 
    17307 
    17308 > select add #2.120
    17309 
    17310 2 models selected 
    17311 
    17312 > select add #2.115
    17313 
    17314 3 models selected 
    17315 
    17316 > select add #2.195
    17317 
    17318 4 models selected 
    17319 
    17320 > select add #2.118
    17321 
    17322 5 models selected 
    17323 
    17324 > select add #2.133
    17325 
    17326 6 models selected 
    17327 
    17328 > select add #2.144
    17329 
    17330 7 models selected 
    17331 
    17332 > select add #2.142
    17333 
    17334 8 models selected 
    17335 
    17336 > select add #2.157
    17337 
    17338 9 models selected 
    17339 
    17340 > select add #2.130
    17341 
    17342 10 models selected 
    17343 
    17344 > select add #2.156
    17345 
    17346 11 models selected 
    17347 
    17348 > select add #2.131
    17349 
    17350 12 models selected 
    17351 
    17352 > select add #2.154
    17353 
    17354 13 models selected 
    17355 
    17356 > select add #2.147
    17357 
    17358 14 models selected 
    17359 
    17360 > select add #2.159
    17361 
    17362 15 models selected 
    17363 
    17364 > select add #2.132
    17365 
    17366 16 models selected 
    17367 
    17368 > select add #2.12
    17369 
    17370 17 models selected 
    17371 
    17372 > select add #2.96
    17373 
    17374 18 models selected 
    17375 Grouped 18 regions 
    17376 
    17377 > select #2.18
    17378 
    17379 1 model selected 
    17380 
    17381 > select #2.18
    17382 
    17383 1 model selected 
    17384 Ungrouped to 5 regions 
    17385 
    17386 > select #2.36
    17387 
    17388 1 model selected 
    17389 
    17390 The cached device pixel ratio value was stale on window expose. Please file a
    17391 QTBUG which explains how to reproduce. 
    17392 
    17393 Showing 184 region surfaces 
    17394 
    17395 > select #2.11
    17396 
    17397 1 model selected 
    17398 
    17399 > select add #2.12
    17400 
    17401 2 models selected 
    17402 
    17403 > select add #2.36
    17404 
    17405 3 models selected 
    17406 
    17407 > select add #2.199
    17408 
    17409 4 models selected 
    17410 
    17411 > select add #2.190
    17412 
    17413 5 models selected 
    17414 
    17415 > select add #2.196
    17416 
    17417 6 models selected 
    17418 
    17419 > select add #2.200
    17420 
    17421 7 models selected 
    17422 
    17423 > select add #2.187
    17424 
    17425 8 models selected 
    17426 
    17427 > select add #2.191
    17428 
    17429 9 models selected 
    17430 
    17431 > select add #2.201
    17432 
    17433 10 models selected 
    17434 Grouped 10 regions 
    17435 
    17436 > select add #2.194
    17437 
    17438 2 models selected 
    17439 Grouped 2 regions 
    17440 
    17441 > select #2.9
    17442 
    17443 1 model selected 
    17444 Ungrouped to 17 regions 
    17445 Showing 190 region surfaces 
    17446 
    17447 > select #2.11
    17448 
    17449 1 model selected 
    17450 
    17451 > select #2.120
    17452 
    17453 1 model selected 
    17454 
    17455 > select add #2.36
    17456 
    17457 2 models selected 
    17458 
    17459 > select add #2.96
    17460 
    17461 3 models selected 
    17462 
    17463 > select add #2.11
    17464 
    17465 4 models selected 
    17466 Grouped 4 regions 
    17467 
    17468 > select add #2.193
    17469 
    17470 2 models selected 
    17471 
    17472 > select add #2.188
    17473 
    17474 3 models selected 
    17475 Grouped 3 regions 
    17476 
    17477 > select #2.14
    17478 
    17479 1 model selected 
    17480 
    17481 > select #2.17
    17482 
    17483 1 model selected 
    17484 Ungrouped to 5 regions 
    17485 Ungrouped to 28 regions 
    17486 
    17487 > select #2.187
    17488 
    17489 1 model selected 
    17490 
    17491 > select add #2.190
    17492 
    17493 2 models selected 
    17494 
    17495 > select add #2.188
    17496 
    17497 3 models selected 
    17498 
    17499 > select add #2.159
    17500 
    17501 4 models selected 
    17502 Grouped 4 regions 
    17503 Showing 209 region surfaces 
    17504 
    17505 > select add #2.9
    17506 
    17507 2 models selected 
    17508 Grouped 2 regions 
    17509 
    17510 > select #2.45
    17511 
    17512 1 model selected 
    17513 Ungrouped to 2 regions 
    17514 
    17515 > select #2.36
    17516 
    17517 1 model selected 
    17518 
    17519 > select #2.36
    17520 
    17521 1 model selected 
    17522 Ungrouped to 3 regions 
    17523 Ungrouped to 16 regions 
    17524 
    17525 > select #2.36
    17526 
    17527 1 model selected 
    17528 
    17529 > select add #2.219
    17530 
    17531 2 models selected 
    17532 Grouped 2 regions 
    17533 
    17534 > select #2.11
    17535 
    17536 1 model selected 
    17537 Ungrouped to 4 regions 
    17538 Ungrouped to 24 regions 
    17539 
    17540 > select #2.36
    17541 
    17542 1 model selected 
    17543 
    17544 > select add #2.229
    17545 
    17546 2 models selected 
    17547 
    17548 > select add #2.228
    17549 
    17550 3 models selected 
    17551 
    17552 > select add #2.230
    17553 
    17554 4 models selected 
    17555 Grouped 4 regions 
    17556 Showing 243 region surfaces 
    17557 
    17558 > select add #2.9
    17559 
    17560 2 models selected 
    17561 Grouped 2 regions 
    17562 
    17563 > select clear
    17564 
    17565 > select #2.175
    17566 
    17567 1 model selected 
    17568 
    17569 > select add #2.174
    17570 
    17571 2 models selected 
    17572 
    17573 > select add #2.20
    17574 
    17575 3 models selected 
    17576 Ungrouped to 22 regions 
    17577 Ungrouped to 71 regions 
    17578 
    17579 > select #2.276
    17580 
    17581 1 model selected 
    17582 
    17583 > select add #2.275
    17584 
    17585 2 models selected 
    17586 
    17587 > select add #2.274
    17588 
    17589 3 models selected 
    17590 
    17591 > select add #2.262
    17592 
    17593 4 models selected 
    17594 
    17595 > select add #2.114
    17596 
    17597 5 models selected 
    17598 
    17599 > select add #2.329
    17600 
    17601 6 models selected 
    17602 Grouped 6 regions 
    17603 
    17604 > select add #2.271
    17605 
    17606 2 models selected 
    17607 
    17608 > select add #2.263
    17609 
    17610 3 models selected 
    17611 
    17612 > select add #2.20
    17613 
    17614 4 models selected 
    17615 
    17616 > select add #2.174
    17617 
    17618 5 models selected 
    17619 
    17620 > select add #2.290
    17621 
    17622 6 models selected 
    17623 
    17624 > select add #2.284
    17625 
    17626 7 models selected 
    17627 
    17628 > select add #2.283
    17629 
    17630 8 models selected 
    17631 
    17632 > select add #2.279
    17633 
    17634 9 models selected 
    17635 
    17636 > select add #2.268
    17637 
    17638 10 models selected 
    17639 
    17640 > select add #2.326
    17641 
    17642 11 models selected 
    17643 
    17644 > select add #2.277
    17645 
    17646 12 models selected 
    17647 
    17648 > select add #2.272
    17649 
    17650 13 models selected 
    17651 
    17652 > select add #2.273
    17653 
    17654 14 models selected 
    17655 
    17656 > select add #2.317
    17657 
    17658 15 models selected 
    17659 
    17660 > select add #2.289
    17661 
    17662 16 models selected 
    17663 
    17664 > select add #2.228
    17665 
    17666 17 models selected 
    17667 
    17668 > select add #2.280
    17669 
    17670 18 models selected 
    17671 
    17672 > select add #2.126
    17673 
    17674 19 models selected 
    17675 
    17676 > select add #2.124
    17677 
    17678 20 models selected 
    17679 
    17680 > select subtract #2.124
    17681 
    17682 19 models selected 
    17683 Grouped 19 regions 
    17684 
    17685 > select #2.124
    17686 
    17687 1 model selected 
    17688 Ungrouped to 10 regions 
    17689 
    17690 > select #2.126
    17691 
    17692 1 model selected 
    17693 
    17694 > select add #2.20
    17695 
    17696 2 models selected 
    17697 Grouped 2 regions 
    17698 
    17699 > select add #2.118
    17700 
    17701 2 models selected 
    17702 Showing 304 region surfaces 
    17703 
    17704 > select add #2.9
    17705 
    17706 3 models selected 
    17707 Grouped 3 regions 
    17708 Opened Rev-CjpflAB-
    17709 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    17710 as #33, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    17711 float32 
    17712 
    17713 The cached device pixel ratio value was stale on window expose. Please file a
    17714 QTBUG which explains how to reproduce. 
    17715 
    17716 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    17717 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    17718 > segment_Aug2420204/Cyt-components.mrc models #33
    17719 
    17720 Opened Rev-CjpflAB-
    17721 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    17722 as #34, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    17723 float32 
    17724 
    17725 > hide #!33 models
    17726 
    17727 > hide #!2 models
    17728 
    17729 The cached device pixel ratio value was stale on window expose. Please file a
    17730 QTBUG which explains how to reproduce. 
    17731 
    17732 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    17733 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    17734 > segment_Aug2420204/IM.mrc models #34
    17735 
    17736 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    17737 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    17738 > segment_Aug2420204/Segmentation2.cxs includeMaps true
    17739 
    17740 > close session
    17741 
    17742 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    17743 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    17744 > segment_Aug2420204/IM.mrc
    17745 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    17746 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    17747 > segment_Aug2420204/Cyt-components.mrc
    17748 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    17749 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    17750 > segment_Aug2420204/FliL.mrc
    17751 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    17752 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    17753 > segment_Aug2420204/PflB-cage.mrc
    17754 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    17755 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    17756 > segment_Aug2420204/Cage.mrc
    17757 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    17758 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    17759 > segment_Aug2420204/FlgY-PflA.mrc
    17760 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    17761 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    17762 > segment_Aug2420204/MS-ring.mrc
    17763 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    17764 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    17765 > segment_Aug2420204/Artifact3.mrc
    17766 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    17767 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    17768 > segment_Aug2420204/MotBpg.mrc
    17769 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    17770 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    17771 > segment_Aug2420204/Artifacts2.mrc
    17772 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    17773 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    17774 > segment_Aug2420204/PflC-PflD.mrc
    17775 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    17776 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    17777 > segment_Aug2420204/Basal-Disk.mrc
    17778 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    17779 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    17780 > segment_Aug2420204/OM.mrc
    17781 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    17782 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    17783 > segment_Aug2420204/LP-ring.mrc
    17784 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    17785 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    17786 > segment_Aug2420204/Artifact1.mrc
    17787 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    17788 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    17789 > segment_Aug2420204/Rod.mrc
    17790 
    17791 Opened IM.mrc as #1.1, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    17792 level 0.0246, step 1, values float32 
    17793 Opened Cyt-components.mrc as #1.2, grid size 220,250,200, pixel
    17794 2.15,2.15,2.15, shown at level 0.0159, step 1, values float32 
    17795 Opened FliL.mrc as #1.3, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    17796 level 0.0029, step 1, values float32 
    17797 Opened PflB-cage.mrc as #1.4, grid size 220,250,200, pixel 2.15,2.15,2.15,
    17798 shown at level 0.0105, step 1, values float32 
    17799 Opened Cage.mrc as #1.5, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    17800 level 0.00285, step 1, values float32 
    17801 Opened FlgY-PflA.mrc as #1.6, grid size 220,250,200, pixel 2.15,2.15,2.15,
    17802 shown at level 0.0231, step 1, values float32 
    17803 Opened MS-ring.mrc as #1.7, grid size 220,250,200, pixel 2.15,2.15,2.15, shown
    17804 at level 0.00313, step 1, values float32 
    17805 Opened Artifact3.mrc as #1.8, grid size 220,250,200, pixel 2.15,2.15,2.15,
    17806 shown at level 0.0028, step 1, values float32 
    17807 Opened MotBpg.mrc as #1.9, grid size 220,250,200, pixel 2.15,2.15,2.15, shown
    17808 at level 0.00284, step 1, values float32 
    17809 Opened Artifacts2.mrc as #1.10, grid size 220,250,200, pixel 2.15,2.15,2.15,
    17810 shown at level 0.00286, step 1, values float32 
    17811 Opened PflC-PflD.mrc as #1.11, grid size 220,250,200, pixel 2.15,2.15,2.15,
    17812 shown at level 0.0453, step 1, values float32 
    17813 Opened Basal-Disk.mrc as #1.12, grid size 220,250,200, pixel 2.15,2.15,2.15,
    17814 shown at level 0.0237, step 1, values float32 
    17815 Opened OM.mrc as #1.13, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    17816 level 0.00412, step 1, values float32 
    17817 Opened LP-ring.mrc as #1.14, grid size 220,250,200, pixel 2.15,2.15,2.15,
    17818 shown at level 0.0134, step 1, values float32 
    17819 Opened Artifact1.mrc as #1.15, grid size 220,250,200, pixel 2.15,2.15,2.15,
    17820 shown at level 0.00301, step 1, values float32 
    17821 Opened Rod.mrc as #1.16, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    17822 level 0.00577, step 1, values float32 
    17823 
    17824 > hide #!1.2 models
    17825 
    17826 > hide #!1.8 models
    17827 
    17828 > hide #!1.10 models
    17829 
    17830 > hide #!1.12 models
    17831 
    17832 > hide #!1.13 models
    17833 
    17834 > hide #!1.14 models
    17835 
    17836 > show #!1.14 models
    17837 
    17838 > hide #!1.11 models
    17839 
    17840 > show #!1.11 models
    17841 
    17842 > hide #!1.5 models
    17843 
    17844 > show #!1.5 models
    17845 
    17846 > hide #!1.15 models
    17847 
    17848 > show #!1.12 models
    17849 
    17850 The cached device pixel ratio value was stale on window expose. Please file a
    17851 QTBUG which explains how to reproduce. 
    17852 
    17853 > volume #1.4 level 0.0029
    17854 
    17855 > volume #1.5 level 0.0029
    17856 
    17857 > volume #1.6 level 0.0029
    17858 
    17859 > volume #1.7 level 0.0029
    17860 
    17861 > volume #1.8 level 0.0029
    17862 
    17863 > volume #1.9 level 0.0029
    17864 
    17865 > volume #1.10 level 0.0029
    17866 
    17867 > volume #1.11 level 0.0029
    17868 
    17869 > volume #1.12 level 0.0029
    17870 
    17871 > volume #1.13 level 0.0029
    17872 
    17873 > volume #1.14 level 0.0029
    17874 
    17875 > volume #1.15 level 0.0029
    17876 
    17877 > volume #1.16 level 0.0029
    17878 
    17879 > volume gaussian #1 sDev ２
    17880 
    17881 Opened IM.mrc gaussian as #2, grid size 220,250,200, pixel 2.15,2.15,2.15,
    17882 shown at step 1, values float32 
    17883 Opened Cyt-components.mrc gaussian as #3, grid size 220,250,200, pixel
    17884 2.15,2.15,2.15, shown at step 1, values float32 
    17885 Opened FliL.mrc gaussian as #4, grid size 220,250,200, pixel 2.15,2.15,2.15,
    17886 shown at step 1, values float32 
    17887 Opened PflB-cage.mrc gaussian as #5, grid size 220,250,200, pixel
    17888 2.15,2.15,2.15, shown at step 1, values float32 
    17889 Opened Cage.mrc gaussian as #6, grid size 220,250,200, pixel 2.15,2.15,2.15,
    17890 shown at step 1, values float32 
    17891 Opened FlgY-PflA.mrc gaussian as #7, grid size 220,250,200, pixel
    17892 2.15,2.15,2.15, shown at step 1, values float32 
    17893 Opened MS-ring.mrc gaussian as #8, grid size 220,250,200, pixel
    17894 2.15,2.15,2.15, shown at step 1, values float32 
    17895 Opened Artifact3.mrc gaussian as #9, grid size 220,250,200, pixel
    17896 2.15,2.15,2.15, shown at step 1, values float32 
    17897 Opened MotBpg.mrc gaussian as #10, grid size 220,250,200, pixel
    17898 2.15,2.15,2.15, shown at step 1, values float32 
    17899 Opened Artifacts2.mrc gaussian as #11, grid size 220,250,200, pixel
    17900 2.15,2.15,2.15, shown at step 1, values float32 
    17901 Opened PflC-PflD.mrc gaussian as #12, grid size 220,250,200, pixel
    17902 2.15,2.15,2.15, shown at step 1, values float32 
    17903 Opened Basal-Disk.mrc gaussian as #13, grid size 220,250,200, pixel
    17904 2.15,2.15,2.15, shown at step 1, values float32 
    17905 Opened OM.mrc gaussian as #14, grid size 220,250,200, pixel 2.15,2.15,2.15,
    17906 shown at step 1, values float32 
    17907 Opened LP-ring.mrc gaussian as #15, grid size 220,250,200, pixel
    17908 2.15,2.15,2.15, shown at step 1, values float32 
    17909 Opened Artifact1.mrc gaussian as #16, grid size 220,250,200, pixel
    17910 2.15,2.15,2.15, shown at step 1, values float32 
    17911 Opened Rod.mrc gaussian as #17, grid size 220,250,200, pixel 2.15,2.15,2.15,
    17912 shown at step 1, values float32 
    17913 
    17914 > volume #2 level 0.0029
    17915 
    17916 > volume #3 level 0.0029
    17917 
    17918 > volume #4 level 0.0029
    17919 
    17920 > volume #5 level 0.0029
    17921 
    17922 > volume #6 level 0.0029
    17923 
    17924 > volume #8 level 0.0029
    17925 
    17926 > volume #9 level 0.0029
    17927 
    17928 > volume #10 level 0.0029
    17929 
    17930 > volume #11 level 0.0029
    17931 
    17932 The cached device pixel ratio value was stale on window expose. Please file a
    17933 QTBUG which explains how to reproduce. 
    17934 
    17935 > volume #12 level 0.0029
    17936 
    17937 > volume #13 level 0.0029
    17938 
    17939 > volume #14 level 0.0029
    17940 
    17941 > volume #15 level 0.0029
    17942 
    17943 > volume #16 level 0.0029
    17944 
    17945 > volume #17 level 0.0029
    17946 
    17947 > volume #13 level 0.01497
    17948 
    17949 > color #13 #727272ff models
    17950 
    17951 > lighting soft
    17952 
    17953 > set bgColor white
    17954 
    17955 > color #12 #727272ff models
    17956 
    17957 > color #6 #52cdd6ff models
    17958 
    17959 > color #6 #4a9ed2ff models
    17960 
    17961 > color #10 #905d12ff modelsmodels
    17962 
    17963 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
    17964 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword 
    17965 
    17966 > color #10 #905d12ff models
    17967 
    17968 > ui tool show "Surface Color"
    17969 
    17970 The cached device pixel ratio value was stale on window expose. Please file a
    17971 QTBUG which explains how to reproduce. 
    17972 
    17973 [Repeated 1 time(s)]
    17974 
    17975 > color radial #7.1 palette #ff0000:#ffffff:#0000ff
    17976 
    17977 > color radial #7.1 palette #ff69f5:#ffffff:#ff1e17
    17978 
    17979 > color radial #7.1 palette #ff69f5:#faceff:#ff1e17
    17980 
    17981 [Repeated 1 time(s)]
    17982 
    17983 > color radial #7.1 palette 229.5,#ff69f5:309.9,#faceff:590.3,#ff1e17
    17984 
    17985 > color radial #7.1 palette 229.5,#f333ff:309.9,#faceff:590.3,#ff1e17
    17986 
    17987 [Repeated 1 time(s)]
    17988 
    17989 > color radial #7.1 palette 229.5,#f333ff:309.9,#fc73ff:590.3,#ff1e17
    17990 
    17991 > color radial #7.1 palette 229.5,#f333ff:309.9,#fc73ff:490.3,#ff1e17
    17992 
    17993 > color radial #7.1 palette 229.5,#f333ff:309.9,#eb21ff:490.3,#ff1e17
    17994 
    17995 > color radial #7.1 palette 229.5,#f333ff:409.9,#eb21ff:490.3,#ff1e17
    17996 
    17997 > color radial #7.1 palette 229.5,#f333ff:409.9,#ffa0fe:490.3,#ff1e17
    17998 
    17999 > color radial #7.1 palette 229.5,#f333ff:359.9,#ffa0fe:490.3,#ff1e17
    18000 
    18001 > color radial #7.1 palette 329.5,#f333ff:359.9,#ffa0fe:490.3,#ff1e17
    18002 
    18003 > color #2 #bdbdbdff models
    18004 
    18005 > color #4 #b7a359ff models
    18006 
    18007 > color #5 magenta models
    18008 
    18009 > hide #!5 models
    18010 
    18011 > show #!5 models
    18012 
    18013 > color #5 #ff77f7ff models
    18014 
    18015 > color #5 #ff5eeaff models
    18016 
    18017 > color #8 #5da36dff models
    18018 
    18019 > color #15 #92aa93ff models
    18020 
    18021 > color #17 #727272ff models
    18022 
    18023 > color radial #5.1 palette #f333ff:#ffa0fe:#ff1e17
    18024 
    18025 > color radial #5.1 palette 281.4,#ff40ff:450.7,#ff40ff:619.9,#797979
    18026 
    18027 The cached device pixel ratio value was stale on window expose. Please file a
    18028 QTBUG which explains how to reproduce. 
    18029 
    18030 > color radial #5.1 palette #ff40ff:#ff40ff
    18031 
    18032 > color radial #5.1 palette 281.4,#ff40ff:619.9,#797979
    18033 
    18034 > key #ff40ff:281 #797979:620 showTool true
    18035 
    18036 > ui mousemode right "color key"
    18037 
    18038 The cached device pixel ratio value was stale on window expose. Please file a
    18039 QTBUG which explains how to reproduce. 
    18040 
    18041 > key #ff40ff:281 #797979:620 showTool true
    18042 
    18043 [Repeated 1 time(s)]
    18044 
    18045 The cached device pixel ratio value was stale on window expose. Please file a
    18046 QTBUG which explains how to reproduce. 
    18047 
    18048 > ui dockable false "Surface Color"
    18049 
    18050 Window position QRect(1224,1261 1291x284) outside any known screen, using
    18051 primary screen 
    18052 
    18053 > key #ff40ff:281 #797979:620 showTool true
    18054 
    18055 > color single #5.1
    18056 
    18057 [Repeated 1 time(s)]
    18058 
    18059 > color radial #5.1 palette 281.4,#ff40ff:619.9,#797979
    18060 
    18061 > color single #5.1
    18062 
    18063 Fetching compressed palette hideTool from
    18064 https://www.colourlovers.com/api/palettes?keywords=hideTool&format=json&numResults=100 
    18065 
    18066 > key #ff40ff:281 #797979:620 hideTool true
    18067 
    18068 Expected a keyword 
    18069 
    18070 > hide #18 models
    18071 
    18072 > close #18
    18073 
    18074 > ui mousemode right translate
    18075 
    18076 > color #12 #72727259 models
    18077 
    18078 > color #13 #72727259 models
    18079 
    18080 > color #6 #72727259 models
    18081 
    18082 > color #5 #72727259 models
    18083 
    18084 > color #10 #72727259 models
    18085 
    18086 > lighting full
    18087 
    18088 > lighting soft
    18089 
    18090 > color #4 #72727259 models
    18091 
    18092 > color #7 #72727259 models
    18093 
    18094 > close #9
    18095 
    18096 > close #3
    18097 
    18098 > close #11
    18099 
    18100 > close #14
    18101 
    18102 > close #16
    18103 
    18104 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    18105 > manuscript/Start_Aug_2024/CJ_FlgV_ST/CJ-PflB-PflAnC17.pdb
    18106 
    18107 Summary of feedback from opening
    18108 /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    18109 manuscript/Start_Aug_2024/CJ_FlgV_ST/CJ-PflB-PflAnC17.pdb 
    18110 --- 
    18111 warnings | Start residue of secondary structure not found: HELIX 1 1 ALA C 169 ASP C 182 1 14 
    18112 Start residue of secondary structure not found: HELIX 2 2 TYR C 186 ARG C 199
    18113 1 14 
    18114 Start residue of secondary structure not found: HELIX 3 3 THR C 206 TYR C 221
    18115 1 16 
    18116 Start residue of secondary structure not found: HELIX 4 4 GLN C 230 THR C 246
    18117 1 17 
    18118 Start residue of secondary structure not found: HELIX 5 5 PHE C 253 ALA C 266
    18119 1 14 
    18120 607 messages similar to the above omitted 
    18121  
    18122 Chain information for CJ-PflB-PflAnC17.pdb 
    18123 --- 
    18124 Chain | Description 
    18125 3.1/A 3.2/A 3.3/A 3.4/A 3.5/A 3.6/A 3.7/A 3.8/A 3.9/A 3.10/A 3.11/A 3.12/A 3.13/A 3.14/A 3.15/A 3.16/A 3.17/A | No description available 
    18126 3.1/C 3.2/C 3.3/C 3.4/C 3.5/C 3.6/C 3.7/C 3.8/C 3.9/C 3.10/C 3.11/C 3.12/C 3.13/C 3.14/C 3.15/C 3.16/C 3.17/C | No description available 
    18127  
    18128 
    18129 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    18130 > manuscript/Start_Aug_2024/CJ_FlgV_ST/Cj-PflAc17.pdb
    18131 
    18132 Chain information for Cj-PflAc17.pdb 
    18133 --- 
    18134 Chain | Description 
    18135 9.1/C 9.2/C 9.3/C 9.4/C 9.5/C 9.6/C 9.7/C 9.8/C 9.9/C 9.10/C 9.11/C 9.12/C 9.13/C 9.14/C 9.15/C 9.16/C 9.17/C | No description available 
    18136  
    18137 
    18138 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    18139 > manuscript/Start_Aug_2024/CJ_FlgV_ST/Cj-FlgYc17.pdb
    18140 
    18141 Summary of feedback from opening
    18142 /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    18143 manuscript/Start_Aug_2024/CJ_FlgV_ST/Cj-FlgYc17.pdb 
    18144 --- 
    18145 warnings | Start residue of secondary structure not found: HELIX 1 1 ALA C 169 ASP C 182 1 14 
    18146 Start residue of secondary structure not found: HELIX 2 2 TYR C 186 ARG C 199
    18147 1 14 
    18148 Start residue of secondary structure not found: HELIX 3 3 THR C 206 TYR C 221
    18149 1 16 
    18150 Start residue of secondary structure not found: HELIX 4 4 GLN C 230 THR C 246
    18151 1 17 
    18152 Start residue of secondary structure not found: HELIX 5 5 PHE C 253 ALA C 266
    18153 1 14 
    18154 31 messages similar to the above omitted 
    18155  
    18156 Chain information for Cj-FlgYc17.pdb 
    18157 --- 
    18158 Chain | Description 
    18159 11.1/A 11.2/A 11.3/A 11.4/A 11.5/A 11.6/A 11.7/A 11.8/A 11.9/A 11.10/A 11.11/A 11.12/A 11.13/A 11.14/A 11.15/A 11.16/A 11.17/A 11.1/B 11.2/B 11.3/B 11.4/B 11.5/B 11.6/B 11.7/B 11.8/B 11.9/B 11.10/B 11.11/B 11.12/B 11.13/B 11.14/B 11.15/B 11.16/B 11.17/B | No description available 
    18160  
    18161 
    18162 > select add #9
    18163 
    18164 86207 atoms, 87652 bonds, 10557 residues, 18 models selected 
    18165 
    18166 > select add #11
    18167 
    18168 128197 atoms, 129846 bonds, 15827 residues, 36 models selected 
    18169 
    18170 > select add #3
    18171 
    18172 235875 atoms, 239445 bonds, 29206 residues, 54 models selected 
    18173 
    18174 > hide #!2 models
    18175 
    18176 > hide #!4 models
    18177 
    18178 > hide #!6 models
    18179 
    18180 > hide #!8 models
    18181 
    18182 > show #!8 models
    18183 
    18184 > hide #!15 models
    18185 
    18186 > hide #!17 models
    18187 
    18188 > hide #!13 models
    18189 
    18190 > hide #!12 models
    18191 
    18192 > ui mousemode right "translate selected models"
    18193 
    18194 > view matrix models
    18195 > #3,1,0,0,-542.96,0,1,0,-237.23,0,0,1,-106.9,#9,1,0,0,-542.96,0,1,0,-237.23,0,0,1,-106.9,#11,1,0,0,-542.96,0,1,0,-237.23,0,0,1,-106.9
    18196 
    18197 > view matrix models
    18198 > #3,1,0,0,-544.56,0,1,0,-250.71,0,0,1,-326.13,#9,1,0,0,-544.56,0,1,0,-250.71,0,0,1,-326.13,#11,1,0,0,-544.56,0,1,0,-250.71,0,0,1,-326.13
    18199 
    18200 > view matrix models
    18201 > #3,1,0,0,-531.61,0,1,0,-262.48,0,0,1,-325.48,#9,1,0,0,-531.61,0,1,0,-262.48,0,0,1,-325.48,#11,1,0,0,-531.61,0,1,0,-262.48,0,0,1,-325.48
    18202 
    18203 > ui mousemode right "rotate selected models"
    18204 
    18205 > view matrix models
    18206 > #3,1,-0.0014584,7.7162e-05,-530.87,0.0014584,1,2.6414e-06,-263.26,-7.7165e-05,-2.5288e-06,1,-325.44,#9,1,-0.0014584,7.7162e-05,-530.87,0.0014584,1,2.6414e-06,-263.26,-7.7165e-05,-2.5288e-06,1,-325.44,#11,1,-0.0014584,7.7162e-05,-530.87,0.0014584,1,2.6414e-06,-263.26,-7.7165e-05,-2.5288e-06,1,-325.44
    18207 
    18208 > view matrix models
    18209 > #3,0.99997,0.0077913,-0.00041228,-535.55,-0.0077913,0.99997,-1.2204e-05,-258.27,0.00041217,1.5416e-05,1,-325.71,#9,0.99997,0.0077913,-0.00041228,-535.55,-0.0077913,0.99997,-1.2204e-05,-258.27,0.00041217,1.5416e-05,1,-325.71,#11,0.99997,0.0077913,-0.00041228,-535.55,-0.0077913,0.99997,-1.2204e-05,-258.27,0.00041217,1.5416e-05,1,-325.71
    18210 
    18211 > view matrix models
    18212 > #3,0.99992,-0.012467,0.00065949,-525.24,0.012467,0.99992,2.6211e-05,-269.15,-0.00065977,-1.7986e-05,1,-325.12,#9,0.99992,-0.012467,0.00065949,-525.24,0.012467,0.99992,2.6211e-05,-269.15,-0.00065977,-1.7986e-05,1,-325.12,#11,0.99992,-0.012467,0.00065949,-525.24,0.012467,0.99992,2.6211e-05,-269.15,-0.00065977,-1.7986e-05,1,-325.12
    18213 
    18214 > view orient
    18215 
    18216 > turn x 90
    18217 
    18218 [Repeated 2 time(s)]
    18219 
    18220 > view matrix models
    18221 > #3,0.99992,-0.012467,0.00065949,-525.24,0.012446,0.99958,0.026169,-282.52,-0.00098547,-0.026159,0.99966,-310.77,#9,0.99992,-0.012467,0.00065949,-525.24,0.012446,0.99958,0.026169,-282.52,-0.00098547,-0.026159,0.99966,-310.77,#11,0.99992,-0.012467,0.00065949,-525.24,0.012446,0.99958,0.026169,-282.52,-0.00098547,-0.026159,0.99966,-310.77
    18222 
    18223 > ui mousemode right "translate selected models"
    18224 
    18225 > view matrix models
    18226 > #3,0.99992,-0.012467,0.00065949,-526.09,0.012467,0.99992,2.6211e-05,-269.15,-0.00065977,-1.7986e-05,1,-308.76,#9,0.99992,-0.012467,0.00065949,-526.09,0.012467,0.99992,2.6211e-05,-269.15,-0.00065977,-1.7986e-05,1,-308.76,#11,0.99992,-0.012467,0.00065949,-526.09,0.012467,0.99992,2.6211e-05,-269.15,-0.00065977,-1.7986e-05,1,-308.76
    18227 
    18228 > turn x 90
    18229 
    18230 > view matrix models
    18231 > #3,0.99992,-0.012467,0.00065949,-523.3,0.012467,0.99992,2.6211e-05,-271.87,-0.00065977,-1.7986e-05,1,-308.76,#9,0.99992,-0.012467,0.00065949,-523.3,0.012467,0.99992,2.6211e-05,-271.87,-0.00065977,-1.7986e-05,1,-308.76,#11,0.99992,-0.012467,0.00065949,-523.3,0.012467,0.99992,2.6211e-05,-271.87,-0.00065977,-1.7986e-05,1,-308.76
    18232 
    18233 > select subtract #3
    18234 
    18235 128197 atoms, 129846 bonds, 15827 residues, 36 models selected 
    18236 
    18237 > select add #3.1
    18238 
    18239 134531 atoms, 136293 bonds, 16614 residues, 37 models selected 
    18240 
    18241 > select subtract #3.1
    18242 
    18243 128197 atoms, 129846 bonds, 15827 residues, 36 models selected 
    18244 
    18245 > select add #3.2
    18246 
    18247 134531 atoms, 136293 bonds, 16614 residues, 37 models selected 
    18248 
    18249 > select subtract #3.2
    18250 
    18251 128197 atoms, 129846 bonds, 15827 residues, 36 models selected 
    18252 
    18253 > select add #3.3
    18254 
    18255 134531 atoms, 136293 bonds, 16614 residues, 37 models selected 
    18256 
    18257 > select subtract #3.3
    18258 
    18259 128197 atoms, 129846 bonds, 15827 residues, 36 models selected 
    18260 
    18261 > select add #3.1
    18262 
    18263 134531 atoms, 136293 bonds, 16614 residues, 37 models selected 
    18264 
    18265 > select subtract #3.1
    18266 
    18267 128197 atoms, 129846 bonds, 15827 residues, 36 models selected 
    18268 
    18269 > select add #3.1
    18270 
    18271 134531 atoms, 136293 bonds, 16614 residues, 37 models selected 
    18272 
    18273 > select add #3.17
    18274 
    18275 140865 atoms, 142740 bonds, 17401 residues, 38 models selected 
    18276 
    18277 > select add #3.16
    18278 
    18279 147199 atoms, 149187 bonds, 18188 residues, 39 models selected 
    18280 
    18281 > select add #3.15
    18282 
    18283 153533 atoms, 155634 bonds, 18975 residues, 40 models selected 
    18284 
    18285 > select add #3.14
    18286 
    18287 159867 atoms, 162081 bonds, 19762 residues, 41 models selected 
    18288 
    18289 > select subtract #3.14
    18290 
    18291 153533 atoms, 155634 bonds, 18975 residues, 40 models selected 
    18292 
    18293 > select add #3.14
    18294 
    18295 159867 atoms, 162081 bonds, 19762 residues, 41 models selected 
    18296 
    18297 > hide #!5 models
    18298 
    18299 > hide #3.14 models
    18300 
    18301 > show #3.14 models
    18302 
    18303 > hide #3.14 models
    18304 
    18305 > show #3.14 models
    18306 
    18307 > select add #3.13
    18308 
    18309 166201 atoms, 168528 bonds, 20549 residues, 42 models selected 
    18310 
    18311 > select subtract #3.13
    18312 
    18313 159867 atoms, 162081 bonds, 19762 residues, 41 models selected 
    18314 
    18315 > hide sel cartoons
    18316 
    18317 > show sel cartoons
    18318 
    18319 > select subtract #9
    18320 
    18321 73660 atoms, 74429 bonds, 9205 residues, 23 models selected 
    18322 
    18323 > select subtract #11
    18324 
    18325 31670 atoms, 32235 bonds, 3935 residues, 5 models selected 
    18326 
    18327 > hide sel cartoons
    18328 
    18329 > show sel cartoons
    18330 
    18331 > select add #7
    18332 
    18333 31670 atoms, 32235 bonds, 3935 residues, 7 models selected 
    18334 
    18335 > select subtract #7
    18336 
    18337 31670 atoms, 32235 bonds, 3935 residues, 5 models selected 
    18338 
    18339 > select add #7
    18340 
    18341 31670 atoms, 32235 bonds, 3935 residues, 7 models selected 
    18342 
    18343 > select subtract #7
    18344 
    18345 31670 atoms, 32235 bonds, 3935 residues, 5 models selected 
    18346 
    18347 > select add #7
    18348 
    18349 31670 atoms, 32235 bonds, 3935 residues, 7 models selected 
    18350 
    18351 > select subtract #7
    18352 
    18353 31670 atoms, 32235 bonds, 3935 residues, 5 models selected 
    18354 
    18355 Cell requested for row 41 is out of bounds for table with 49 rows! Resizing
    18356 table model. 
    18357 
    18358 > select add #9.1
    18359 
    18360 36741 atoms, 37391 bonds, 4556 residues, 6 models selected 
    18361 
    18362 > select add #9.2
    18363 
    18364 41812 atoms, 42547 bonds, 5177 residues, 7 models selected 
    18365 
    18366 > select add #9.17
    18367 
    18368 46883 atoms, 47703 bonds, 5798 residues, 8 models selected 
    18369 
    18370 > select add #9.16
    18371 
    18372 51954 atoms, 52859 bonds, 6419 residues, 9 models selected 
    18373 
    18374 > select add #9.15
    18375 
    18376 57025 atoms, 58015 bonds, 7040 residues, 10 models selected 
    18377 
    18378 > select add #9.14
    18379 
    18380 62096 atoms, 63171 bonds, 7661 residues, 11 models selected 
    18381 
    18382 > select add #9.3
    18383 
    18384 67167 atoms, 68327 bonds, 8282 residues, 12 models selected 
    18385 
    18386 > select add #11.1
    18387 
    18388 69637 atoms, 70809 bonds, 8592 residues, 13 models selected 
    18389 
    18390 > select add #11.2
    18391 
    18392 72107 atoms, 73291 bonds, 8902 residues, 14 models selected 
    18393 
    18394 > select add #11.3
    18395 
    18396 74577 atoms, 75773 bonds, 9212 residues, 15 models selected 
    18397 
    18398 > select add #11.17
    18399 
    18400 77047 atoms, 78255 bonds, 9522 residues, 16 models selected 
    18401 
    18402 > select add #11.16
    18403 
    18404 79517 atoms, 80737 bonds, 9832 residues, 17 models selected 
    18405 
    18406 > select add #11.15
    18407 
    18408 81987 atoms, 83219 bonds, 10142 residues, 18 models selected 
    18409 
    18410 > select add #11.14
    18411 
    18412 84457 atoms, 85701 bonds, 10452 residues, 19 models selected 
    18413 
    18414 > hide sel cartoons
    18415 
    18416 > show sel cartoons
    18417 
    18418 > select add #3.2
    18419 
    18420 90791 atoms, 92148 bonds, 11239 residues, 20 models selected 
    18421 
    18422 > select add #3.13
    18423 
    18424 97125 atoms, 98595 bonds, 12026 residues, 21 models selected 
    18425 
    18426 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    18427 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-extract-from-Jack/FlgY-PflA-
    18428 > PflB.pdb selectedOnly true
    18429 
    18430 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    18431 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-extract-from-Jack/FlgY-PflA-
    18432 > PflB.pdb
    18433 
    18434 Summary of feedback from opening
    18435 /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    18436 manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-extract-from-Jack/FlgY-PflA-
    18437 PflB.pdb 
    18438 --- 
    18439 warnings | Start residue of secondary structure not found: HELIX 1 1 ARG A 109 LEU A 122 1 14 
    18440 Start residue of secondary structure not found: HELIX 2 2 VAL A 126 MET A 153
    18441 1 28 
    18442 Start residue of secondary structure not found: HELIX 3 3 PHE A 158 ALA A 170
    18443 1 13 
    18444 Start residue of secondary structure not found: HELIX 4 4 GLN A 175 LYS A 188
    18445 1 14 
    18446 Start residue of secondary structure not found: HELIX 5 5 LYS A 192 TYR A 205
    18447 1 14 
    18448 821 messages similar to the above omitted 
    18449  
    18450 Chain information for FlgY-PflA-PflB.pdb 
    18451 --- 
    18452 Chain | Description 
    18453 14.1/A 14.2/A 14.3/A 14.4/A 14.5/A 14.6/A 14.7/A | No description available 
    18454 14.15/A 14.16/A 14.17/A 14.18/A 14.19/A 14.20/A 14.21/A 14.15/B 14.16/B 14.17/B 14.18/B 14.19/B 14.20/B 14.21/B | No description available 
    18455 14.1/C 14.2/C 14.3/C 14.4/C 14.5/C 14.6/C 14.7/C | No description available 
    18456 14.8/C 14.9/C 14.10/C 14.11/C 14.12/C 14.13/C 14.14/C | No description available 
    18457  
    18458 
    18459 > select add #3
    18460 
    18461 160465 atoms, 163065 bonds, 19896 residues, 32 models selected 
    18462 
    18463 > hide #!3 models
    18464 
    18465 > select subtract #3
    18466 
    18467 52787 atoms, 53466 bonds, 6517 residues, 14 models selected 
    18468 
    18469 > select add #9
    18470 
    18471 103497 atoms, 105026 bonds, 12727 residues, 25 models selected 
    18472 
    18473 > select subtract #9
    18474 
    18475 17290 atoms, 17374 bonds, 2170 residues, 7 models selected 
    18476 
    18477 > hide #!9 models
    18478 
    18479 > select add #11
    18480 
    18481 41990 atoms, 42194 bonds, 5270 residues, 18 models selected 
    18482 
    18483 > select subtract #11
    18484 
    18485 Nothing selected 
    18486 
    18487 > hide #!11 models
    18488 
    18489 > select add #14
    18490 
    18491 97125 atoms, 98595 bonds, 12026 residues, 22 models selected 
    18492 
    18493 > combine #14 modelId #15 name FlgY-PflA-PflB-comp
    18494 
    18495 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.2 to 'B' 
    18496 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.2 to 'D' 
    18497 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.3 to 'E' 
    18498 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.3 to 'F' 
    18499 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.4 to 'G' 
    18500 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.4 to 'H' 
    18501 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.5 to 'I' 
    18502 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.5 to 'J' 
    18503 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.6 to 'K' 
    18504 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.6 to 'L' 
    18505 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.7 to 'M' 
    18506 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.7 to 'N' 
    18507 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.8 to 'O' 
    18508 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.9 to 'P' 
    18509 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.10 to 'Q' 
    18510 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.11 to 'R' 
    18511 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.12 to 'S' 
    18512 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.13 to 'T' 
    18513 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.14 to 'U' 
    18514 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.15 to 'V' 
    18515 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.15 to 'W' 
    18516 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.16 to 'X' 
    18517 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.16 to 'Y' 
    18518 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.17 to 'Z' 
    18519 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.17 to 'a' 
    18520 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.18 to 'b' 
    18521 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.18 to 'c' 
    18522 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.19 to 'd' 
    18523 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.19 to 'e' 
    18524 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.20 to 'f' 
    18525 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.20 to 'g' 
    18526 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.21 to 'h' 
    18527 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.21 to 'i' 
    18528 Traceback (most recent call last): 
    18529 File
    18530 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18531 packages/chimerax/cmd_line/tool.py", line 319, in execute 
    18532 cmd.run(cmd_text) 
    18533 File
    18534 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18535 packages/chimerax/core/commands/cli.py", line 3213, in run 
    18536 result = ci.function(session, **kw_args) 
    18537 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18538 File
    18539 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18540 packages/chimerax/atomic/cmd.py", line 169, in combine_cmd 
    18541 session.models.add([combination]) 
    18542 File
    18543 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18544 packages/chimerax/core/models.py", line 756, in add 
    18545 p = self._parent_for_added_model(model, parent, root_model = root_model) 
    18546 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18547 File
    18548 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18549 packages/chimerax/core/models.py", line 825, in _parent_for_added_model 
    18550 raise ValueError('Tried to add model %s with the same id as another model %s' 
    18551 ValueError: Tried to add model FlgY-PflA-PflB-comp #15 with the same id as
    18552 another model LP-ring.mrc gaussian #15 
    18553  
    18554 ValueError: Tried to add model FlgY-PflA-PflB-comp #15 with the same id as
    18555 another model LP-ring.mrc gaussian #15 
    18556  
    18557 File
    18558 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18559 packages/chimerax/core/models.py", line 825, in _parent_for_added_model 
    18560 raise ValueError('Tried to add model %s with the same id as another model %s' 
    18561  
    18562 See log for complete Python traceback. 
    18563  
    18564 
    18565 > combine #14 modelId #16 name FlgY-PflA-PflB-comp
    18566 
    18567 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.2 to 'B' 
    18568 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.2 to 'D' 
    18569 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.3 to 'E' 
    18570 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.3 to 'F' 
    18571 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.4 to 'G' 
    18572 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.4 to 'H' 
    18573 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.5 to 'I' 
    18574 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.5 to 'J' 
    18575 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.6 to 'K' 
    18576 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.6 to 'L' 
    18577 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.7 to 'M' 
    18578 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.7 to 'N' 
    18579 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.8 to 'O' 
    18580 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.9 to 'P' 
    18581 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.10 to 'Q' 
    18582 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.11 to 'R' 
    18583 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.12 to 'S' 
    18584 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.13 to 'T' 
    18585 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.14 to 'U' 
    18586 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.15 to 'V' 
    18587 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.15 to 'W' 
    18588 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.16 to 'X' 
    18589 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.16 to 'Y' 
    18590 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.17 to 'Z' 
    18591 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.17 to 'a' 
    18592 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.18 to 'b' 
    18593 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.18 to 'c' 
    18594 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.19 to 'd' 
    18595 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.19 to 'e' 
    18596 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.20 to 'f' 
    18597 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.20 to 'g' 
    18598 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.21 to 'h' 
    18599 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.21 to 'i' 
    18600 
    18601 > select subtract #14
    18602 
    18603 Nothing selected 
    18604 
    18605 > hide #!14 models
    18606 
    18607 > select add #16
    18608 
    18609 97125 atoms, 98595 bonds, 12026 residues, 1 model selected 
    18610 
    18611 > ui tool show "Fit in Map"
    18612 
    18613 > hide #!7 models
    18614 
    18615 > show #!7 models
    18616 
    18617 The cached device pixel ratio value was stale on window expose. Please file a
    18618 QTBUG which explains how to reproduce. 
    18619 
    18620 [Repeated 1 time(s)]
    18621 
    18622 > fitmap #16 inMap #7
    18623 
    18624 Fit molecule FlgY-PflA-PflB-comp (#16) to map FlgY-PflA.mrc gaussian (#7)
    18625 using 97125 atoms 
    18626 average map value = 0.02173, steps = 76 
    18627 shifted from previous position = 10.6 
    18628 rotated from previous position = 2.68 degrees 
    18629 atoms outside contour = 62067, contour level = 0.021605 
    18630  
    18631 Position of FlgY-PflA-PflB-comp (#16) relative to FlgY-PflA.mrc gaussian (#7)
    18632 coordinates: 
    18633 Matrix rotation and translation 
    18634 0.99890813 -0.04632273 -0.00606159 12.03955752 
    18635 0.04632964 0.99892570 0.00100467 -4.85386975 
    18636 0.00600854 -0.00128440 0.99998112 -10.34904122 
    18637 Axis -0.02449159 -0.12914303 0.99132348 
    18638 Axis point 138.26968799 251.39821636 0.00000000 
    18639 Rotation angle (degrees) 2.67850189 
    18640 Shift along axis -9.92727198 
    18641  
    18642 
    18643 > fitmap #16 inMap #7
    18644 
    18645 Fit molecule FlgY-PflA-PflB-comp (#16) to map FlgY-PflA.mrc gaussian (#7)
    18646 using 97125 atoms 
    18647 average map value = 0.02173, steps = 40 
    18648 shifted from previous position = 0.0317 
    18649 rotated from previous position = 0.00436 degrees 
    18650 atoms outside contour = 62067, contour level = 0.021605 
    18651  
    18652 Position of FlgY-PflA-PflB-comp (#16) relative to FlgY-PflA.mrc gaussian (#7)
    18653 coordinates: 
    18654 Matrix rotation and translation 
    18655 0.99890639 -0.04636086 -0.00605837 12.04749501 
    18656 0.04636737 0.99892401 0.00093864 -4.85138056 
    18657 0.00600834 -0.00121852 0.99998121 -10.39765652 
    18658 Axis -0.02306257 -0.12900753 0.99137540 
    18659 Axis point 138.18039759 251.64926912 0.00000000 
    18660 Rotation angle (degrees) 2.68055621 
    18661 Shift along axis -9.95996242 
    18662  
    18663 
    18664 > fitmap #16 inMap #7
    18665 
    18666 Fit molecule FlgY-PflA-PflB-comp (#16) to map FlgY-PflA.mrc gaussian (#7)
    18667 using 97125 atoms 
    18668 average map value = 0.02173, steps = 44 
    18669 shifted from previous position = 0.00727 
    18670 rotated from previous position = 0.00299 degrees 
    18671 atoms outside contour = 62063, contour level = 0.021605 
    18672  
    18673 Position of FlgY-PflA-PflB-comp (#16) relative to FlgY-PflA.mrc gaussian (#7)
    18674 coordinates: 
    18675 Matrix rotation and translation 
    18676 0.99890454 -0.04640439 -0.00602977 12.05565586 
    18677 0.04641086 0.99892200 0.00093720 -4.85263354 
    18678 0.00597978 -0.00121602 0.99998138 -10.39368692 
    18679 Axis -0.02300119 -0.12828821 0.99147016 
    18680 Axis point 137.93292863 251.60266362 0.00000000 
    18681 Rotation angle (degrees) 2.68281694 
    18682 Shift along axis -9.95978923 
    18683  
    18684 
    18685 > select subtract #16
    18686 
    18687 Nothing selected 
    18688 
    18689 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    18690 > manuscript/Start_Aug_2024/Local-ref-PflAB/Hp_FliF.pdb
    18691 
    18692 Summary of feedback from opening
    18693 /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    18694 manuscript/Start_Aug_2024/Local-ref-PflAB/Hp_FliF.pdb 
    18695 --- 
    18696 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77 
    18697 Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
    18698 3 
    18699 Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
    18700 1 12 
    18701 Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
    18702 1 3 
    18703 Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
    18704 1 3 
    18705 5 messages similar to the above omitted 
    18706 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18707 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18708 0 
    18709 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18710 131 0 
    18711 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18712 144 0 
    18713 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18714 116 0 
    18715 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18716 133 0 
    18717 13 messages similar to the above omitted 
    18718 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18719 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18720 0 
    18721 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18722 131 0 
    18723 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18724 144 0 
    18725 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18726 116 0 
    18727 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18728 133 0 
    18729 13 messages similar to the above omitted 
    18730 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18731 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18732 0 
    18733 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18734 131 0 
    18735 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18736 144 0 
    18737 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18738 116 0 
    18739 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18740 133 0 
    18741 13 messages similar to the above omitted 
    18742 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18743 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18744 0 
    18745 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18746 131 0 
    18747 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18748 144 0 
    18749 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18750 116 0 
    18751 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18752 133 0 
    18753 13 messages similar to the above omitted 
    18754 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18755 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18756 0 
    18757 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18758 131 0 
    18759 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18760 144 0 
    18761 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18762 116 0 
    18763 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18764 133 0 
    18765 13 messages similar to the above omitted 
    18766 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18767 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18768 0 
    18769 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18770 131 0 
    18771 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18772 144 0 
    18773 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18774 116 0 
    18775 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18776 133 0 
    18777 13 messages similar to the above omitted 
    18778 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18779 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18780 0 
    18781 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18782 131 0 
    18783 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18784 144 0 
    18785 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18786 116 0 
    18787 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18788 133 0 
    18789 13 messages similar to the above omitted 
    18790 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18791 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18792 0 
    18793 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18794 131 0 
    18795 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18796 144 0 
    18797 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18798 116 0 
    18799 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18800 133 0 
    18801 13 messages similar to the above omitted 
    18802 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18803 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18804 0 
    18805 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18806 131 0 
    18807 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18808 144 0 
    18809 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18810 116 0 
    18811 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18812 133 0 
    18813 13 messages similar to the above omitted 
    18814 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18815 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18816 0 
    18817 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18818 131 0 
    18819 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18820 144 0 
    18821 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18822 116 0 
    18823 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18824 133 0 
    18825 13 messages similar to the above omitted 
    18826 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18827 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18828 0 
    18829 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18830 131 0 
    18831 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18832 144 0 
    18833 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18834 116 0 
    18835 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18836 133 0 
    18837 13 messages similar to the above omitted 
    18838 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18839 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18840 0 
    18841 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18842 131 0 
    18843 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18844 144 0 
    18845 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18846 116 0 
    18847 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18848 133 0 
    18849 13 messages similar to the above omitted 
    18850 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18851 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18852 0 
    18853 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18854 131 0 
    18855 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18856 144 0 
    18857 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18858 116 0 
    18859 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18860 133 0 
    18861 13 messages similar to the above omitted 
    18862 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18863 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18864 0 
    18865 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18866 131 0 
    18867 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18868 144 0 
    18869 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18870 116 0 
    18871 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18872 133 0 
    18873 13 messages similar to the above omitted 
    18874 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18875 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18876 0 
    18877 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18878 131 0 
    18879 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18880 144 0 
    18881 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18882 116 0 
    18883 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18884 133 0 
    18885 13 messages similar to the above omitted 
    18886 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18887 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18888 0 
    18889 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18890 131 0 
    18891 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18892 144 0 
    18893 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18894 116 0 
    18895 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18896 133 0 
    18897 13 messages similar to the above omitted 
    18898 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18899 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18900 0 
    18901 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18902 131 0 
    18903 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18904 144 0 
    18905 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18906 116 0 
    18907 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18908 133 0 
    18909 13 messages similar to the above omitted 
    18910 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18911 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18912 0 
    18913 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18914 131 0 
    18915 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18916 144 0 
    18917 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18918 116 0 
    18919 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18920 133 0 
    18921 13 messages similar to the above omitted 
    18922 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18923 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18924 0 
    18925 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18926 131 0 
    18927 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18928 144 0 
    18929 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18930 116 0 
    18931 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18932 133 0 
    18933 13 messages similar to the above omitted 
    18934 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18935 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18936 0 
    18937 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18938 131 0 
    18939 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18940 144 0 
    18941 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18942 116 0 
    18943 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18944 133 0 
    18945 13 messages similar to the above omitted 
    18946 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    18947 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    18948 0 
    18949 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    18950 131 0 
    18951 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    18952 144 0 
    18953 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    18954 116 0 
    18955 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    18956 133 0 
    18957 1143 messages similar to the above omitted 
    18958  
    18959 Chain information for Hp_FliF.pdb 
    18960 --- 
    18961 Chain | Description 
    18962 18.1/A 18.2/A 18.3/A 18.4/A 18.5/A 18.6/A 18.7/A 18.8/A 18.9/A 18.10/A 18.11/A 18.12/A 18.13/A 18.14/A 18.15/A 18.16/A 18.17/A 18.18/A 18.19/A 18.20/A 18.21/A | No description available 
    18963 18.22/A 18.23/A 18.24/A 18.25/A 18.26/A 18.27/A 18.28/A 18.29/A 18.30/A 18.31/A 18.32/A 18.33/A 18.34/A 18.35/A 18.36/A 18.37/A 18.38/A 18.39/A 18.40/A 18.41/A 18.42/A | No description available 
    18964 18.43/A 18.44/A 18.45/A 18.46/A 18.47/A 18.48/A 18.49/A 18.50/A 18.51/A 18.52/A 18.53/A 18.54/A 18.55/A 18.56/A 18.57/A 18.58/A 18.59/A 18.60/A 18.61/A 18.62/A 18.63/A 18.64/A 18.65/A 18.66/A 18.67/A 18.68/A 18.69/A 18.70/A 18.71/A 18.72/A 18.73/A 18.74/A 18.75/A 18.76/A 18.77/A 18.78/A 18.79/A 18.80/A 18.81/A | No description available 
    18965  
    18966 
    18967 > select add #18
    18968 
    18969 112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 121 models
    18970 selected 
    18971 
    18972 > view matrix models #18,1,0,0,-412.46,0,1,0,-284.19,0,0,1,80.619
    18973 
    18974 > view matrix models #18,1,0,0,-500.78,0,1,0,-408.54,0,0,1,-217.91
    18975 
    18976 > view matrix models #18,1,0,0,-525.11,0,1,0,-308.76,0,0,1,-172.07
    18977 
    18978 > view matrix models #18,1,0,0,-528.84,0,1,0,-264.67,0,0,1,-290.37
    18979 
    18980 > view matrix models #18,1,0,0,-526.71,0,1,0,-269.57,0,0,1,-290.29
    18981 
    18982 > view matrix models #18,1,0,0,-526.04,0,1,0,-271.65,0,0,1,-309.49
    18983 
    18984 > combine #18 modelId #19 name Hp-FliF-comp
    18985 
    18986 Remapping chain ID 'A' in Hp_FliF.pdb #18.2 to 'B' 
    18987 Remapping chain ID 'A' in Hp_FliF.pdb #18.3 to 'C' 
    18988 Remapping chain ID 'A' in Hp_FliF.pdb #18.4 to 'D' 
    18989 Remapping chain ID 'A' in Hp_FliF.pdb #18.5 to 'E' 
    18990 Remapping chain ID 'A' in Hp_FliF.pdb #18.6 to 'F' 
    18991 Remapping chain ID 'A' in Hp_FliF.pdb #18.7 to 'G' 
    18992 Remapping chain ID 'A' in Hp_FliF.pdb #18.8 to 'H' 
    18993 Remapping chain ID 'A' in Hp_FliF.pdb #18.9 to 'I' 
    18994 Remapping chain ID 'A' in Hp_FliF.pdb #18.10 to 'J' 
    18995 Remapping chain ID 'A' in Hp_FliF.pdb #18.11 to 'K' 
    18996 Remapping chain ID 'A' in Hp_FliF.pdb #18.12 to 'L' 
    18997 Remapping chain ID 'A' in Hp_FliF.pdb #18.13 to 'M' 
    18998 Remapping chain ID 'A' in Hp_FliF.pdb #18.14 to 'N' 
    18999 Remapping chain ID 'A' in Hp_FliF.pdb #18.15 to 'O' 
    19000 Remapping chain ID 'A' in Hp_FliF.pdb #18.16 to 'P' 
    19001 Remapping chain ID 'A' in Hp_FliF.pdb #18.17 to 'Q' 
    19002 Remapping chain ID 'A' in Hp_FliF.pdb #18.18 to 'R' 
    19003 Remapping chain ID 'A' in Hp_FliF.pdb #18.19 to 'S' 
    19004 Remapping chain ID 'A' in Hp_FliF.pdb #18.20 to 'T' 
    19005 Remapping chain ID 'A' in Hp_FliF.pdb #18.21 to 'U' 
    19006 Remapping chain ID 'A' in Hp_FliF.pdb #18.22 to 'V' 
    19007 Remapping chain ID 'A' in Hp_FliF.pdb #18.23 to 'W' 
    19008 Remapping chain ID 'A' in Hp_FliF.pdb #18.24 to 'X' 
    19009 Remapping chain ID 'A' in Hp_FliF.pdb #18.25 to 'Y' 
    19010 Remapping chain ID 'A' in Hp_FliF.pdb #18.26 to 'Z' 
    19011 Remapping chain ID 'A' in Hp_FliF.pdb #18.27 to 'a' 
    19012 Remapping chain ID 'A' in Hp_FliF.pdb #18.28 to 'b' 
    19013 Remapping chain ID 'A' in Hp_FliF.pdb #18.29 to 'c' 
    19014 Remapping chain ID 'A' in Hp_FliF.pdb #18.30 to 'd' 
    19015 Remapping chain ID 'A' in Hp_FliF.pdb #18.31 to 'e' 
    19016 Remapping chain ID 'A' in Hp_FliF.pdb #18.32 to 'f' 
    19017 Remapping chain ID 'A' in Hp_FliF.pdb #18.33 to 'g' 
    19018 Remapping chain ID 'A' in Hp_FliF.pdb #18.34 to 'h' 
    19019 Remapping chain ID 'A' in Hp_FliF.pdb #18.35 to 'i' 
    19020 Remapping chain ID 'A' in Hp_FliF.pdb #18.36 to 'j' 
    19021 Remapping chain ID 'A' in Hp_FliF.pdb #18.37 to 'k' 
    19022 Remapping chain ID 'A' in Hp_FliF.pdb #18.38 to 'l' 
    19023 Remapping chain ID 'A' in Hp_FliF.pdb #18.39 to 'm' 
    19024 Remapping chain ID 'A' in Hp_FliF.pdb #18.40 to 'n' 
    19025 Remapping chain ID 'A' in Hp_FliF.pdb #18.41 to 'o' 
    19026 Remapping chain ID 'A' in Hp_FliF.pdb #18.42 to 'p' 
    19027 Remapping chain ID 'A' in Hp_FliF.pdb #18.43 to 'q' 
    19028 Remapping chain ID 'A' in Hp_FliF.pdb #18.44 to 'r' 
    19029 Remapping chain ID 'A' in Hp_FliF.pdb #18.45 to 's' 
    19030 Remapping chain ID 'A' in Hp_FliF.pdb #18.46 to 't' 
    19031 Remapping chain ID 'A' in Hp_FliF.pdb #18.47 to 'u' 
    19032 Remapping chain ID 'A' in Hp_FliF.pdb #18.48 to 'v' 
    19033 Remapping chain ID 'A' in Hp_FliF.pdb #18.49 to 'w' 
    19034 Remapping chain ID 'A' in Hp_FliF.pdb #18.50 to 'x' 
    19035 Remapping chain ID 'A' in Hp_FliF.pdb #18.51 to 'y' 
    19036 Remapping chain ID 'A' in Hp_FliF.pdb #18.52 to 'z' 
    19037 Remapping chain ID 'A' in Hp_FliF.pdb #18.53 to '1' 
    19038 Remapping chain ID 'A' in Hp_FliF.pdb #18.54 to '2' 
    19039 Remapping chain ID 'A' in Hp_FliF.pdb #18.55 to '3' 
    19040 Remapping chain ID 'A' in Hp_FliF.pdb #18.56 to '4' 
    19041 Remapping chain ID 'A' in Hp_FliF.pdb #18.57 to '5' 
    19042 Remapping chain ID 'A' in Hp_FliF.pdb #18.58 to '6' 
    19043 Remapping chain ID 'A' in Hp_FliF.pdb #18.59 to '7' 
    19044 Remapping chain ID 'A' in Hp_FliF.pdb #18.60 to '8' 
    19045 Remapping chain ID 'A' in Hp_FliF.pdb #18.61 to '9' 
    19046 Remapping chain ID 'A' in Hp_FliF.pdb #18.62 to '0' 
    19047 Remapping chain ID 'A' in Hp_FliF.pdb #18.63 to 'AA' 
    19048 Remapping chain ID 'A' in Hp_FliF.pdb #18.64 to 'AB' 
    19049 Remapping chain ID 'A' in Hp_FliF.pdb #18.65 to 'AC' 
    19050 Remapping chain ID 'A' in Hp_FliF.pdb #18.66 to 'AD' 
    19051 Remapping chain ID 'A' in Hp_FliF.pdb #18.67 to 'AE' 
    19052 Remapping chain ID 'A' in Hp_FliF.pdb #18.68 to 'AF' 
    19053 Remapping chain ID 'A' in Hp_FliF.pdb #18.69 to 'AG' 
    19054 Remapping chain ID 'A' in Hp_FliF.pdb #18.70 to 'AH' 
    19055 Remapping chain ID 'A' in Hp_FliF.pdb #18.71 to 'AI' 
    19056 Remapping chain ID 'A' in Hp_FliF.pdb #18.72 to 'AJ' 
    19057 Remapping chain ID 'A' in Hp_FliF.pdb #18.73 to 'AK' 
    19058 Remapping chain ID 'A' in Hp_FliF.pdb #18.74 to 'AL' 
    19059 Remapping chain ID 'A' in Hp_FliF.pdb #18.75 to 'AM' 
    19060 Remapping chain ID 'A' in Hp_FliF.pdb #18.76 to 'AN' 
    19061 Remapping chain ID 'A' in Hp_FliF.pdb #18.77 to 'AO' 
    19062 Remapping chain ID 'A' in Hp_FliF.pdb #18.78 to 'AP' 
    19063 Remapping chain ID 'A' in Hp_FliF.pdb #18.79 to 'AQ' 
    19064 Remapping chain ID 'A' in Hp_FliF.pdb #18.80 to 'AR' 
    19065 Remapping chain ID 'A' in Hp_FliF.pdb #18.81 to 'AS' 
    19066 
    19067 > select subtract #18
    19068 
    19069 Nothing selected 
    19070 
    19071 > hide #!18 models
    19072 
    19073 > close #18
    19074 
    19075 > fitmap #19 inMap #8
    19076 
    19077 Fit molecule Hp-FliF-comp (#19) to map MS-ring.mrc gaussian (#8) using 112125
    19078 atoms 
    19079 average map value = 0.01124, steps = 240 
    19080 shifted from previous position = 6.7 
    19081 rotated from previous position = 5.76 degrees 
    19082 atoms outside contour = 79659, contour level = 0.0029 
    19083  
    19084 Position of Hp-FliF-comp (#19) relative to MS-ring.mrc gaussian (#8)
    19085 coordinates: 
    19086 Matrix rotation and translation 
    19087 0.99494987 -0.08808776 -0.04811753 -453.04926146 
    19088 0.08819268 0.99610343 0.00005766 -318.27166417 
    19089 0.04792495 -0.00430098 0.99884168 -326.11066539 
    19090 Axis -0.02170712 -0.47831516 0.87791993 
    19091 Axis point 4043.75615626 -5405.60252129 0.00000000 
    19092 Rotation angle (degrees) 5.76201189 
    19093 Shift along axis -124.23049728 
    19094  
    19095 
    19096 > fitmap #19 inMap #8
    19097 
    19098 Fit molecule Hp-FliF-comp (#19) to map MS-ring.mrc gaussian (#8) using 112125
    19099 atoms 
    19100 average map value = 0.01124, steps = 44 
    19101 shifted from previous position = 0.0187 
    19102 rotated from previous position = 0.115 degrees 
    19103 atoms outside contour = 79648, contour level = 0.0029 
    19104  
    19105 Position of Hp-FliF-comp (#19) relative to MS-ring.mrc gaussian (#8)
    19106 coordinates: 
    19107 Matrix rotation and translation 
    19108 0.99477266 -0.09007936 -0.04809439 -451.89435525 
    19109 0.09018680 0.99592486 0.00006420 -319.22900610 
    19110 0.04789261 -0.00440134 0.99884279 -326.04112326 
    19111 Axis -0.02186016 -0.46988510 0.88245687 
    19112 Axis point 3967.21079221 -5277.86678279 0.00000000 
    19113 Rotation angle (degrees) 5.86234530 
    19114 Shift along axis -127.83779472 
    19115  
    19116 
    19117 > fitmap #19 inMap #8
    19118 
    19119 Fit molecule Hp-FliF-comp (#19) to map MS-ring.mrc gaussian (#8) using 112125
    19120 atoms 
    19121 average map value = 0.01125, steps = 40 
    19122 shifted from previous position = 0.0156 
    19123 rotated from previous position = 0.0564 degrees 
    19124 atoms outside contour = 79654, contour level = 0.0029 
    19125  
    19126 Position of Hp-FliF-comp (#19) relative to MS-ring.mrc gaussian (#8)
    19127 coordinates: 
    19128 Matrix rotation and translation 
    19129 0.99468143 -0.09105658 -0.04814093 -451.31123222 
    19130 0.09116550 0.99583575 0.00006715 -319.70117678 
    19131 0.04793435 -0.00445559 0.99884055 -326.02873784 
    19132 Axis -0.02194993 -0.46627609 0.88436690 
    19133 Axis point 3930.10921638 -5217.12001004 0.00000000 
    19134 Rotation angle (degrees) 5.91333413 
    19135 Shift along axis -129.35375721 
    19136  
    19137 
    19138 > fitmap #19 inMap #8
    19139 
    19140 Fit molecule Hp-FliF-comp (#19) to map MS-ring.mrc gaussian (#8) using 112125
    19141 atoms 
    19142 average map value = 0.01125, steps = 48 
    19143 shifted from previous position = 0.0121 
    19144 rotated from previous position = 0.0167 degrees 
    19145 atoms outside contour = 79655, contour level = 0.0029 
    19146  
    19147 Position of Hp-FliF-comp (#19) relative to MS-ring.mrc gaussian (#8)
    19148 coordinates: 
    19149 Matrix rotation and translation 
    19150 0.99465592 -0.09134481 -0.04812207 -451.14593579 
    19151 0.09145477 0.99580923 0.00008361 -319.84811212 
    19152 0.04791277 -0.00448416 0.99884146 -326.01348203 
    19153 Axis -0.02211556 -0.46496714 0.88505167 
    19154 Axis point 3919.20566949 -5199.66103898 0.00000000 
    19155 Rotation angle (degrees) 5.92753566 
    19156 Shift along axis -129.84257200 
    19157  
    19158 
    19159 > show #!5 models
    19160 
    19161 > show #!4 models
    19162 
    19163 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    19164 > manuscript/Start_Aug_2024/CJ_FlgV_ST/Cj-FliLringC17.pdb
    19165 
    19166 Chain information for Cj-FliLringC17.pdb 
    19167 --- 
    19168 Chain | Description 
    19169 18.11/? 18.12/? 18.13/? 18.14/? 18.15/? 18.16/? 18.17/? 18.18/? 18.19/? 18.20/? | No description available 
    19170 18.1/B 18.2/B 18.3/B 18.4/B 18.5/B 18.6/B 18.7/B 18.8/B 18.9/B 18.10/B | No description available 
    19171  
    19172 
    19173 > select add #19
    19174 
    19175 112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 2 models selected 
    19176 
    19177 > select subtract #19
    19178 
    19179 Nothing selected 
    19180 
    19181 > select add #18
    19182 
    19183 9850 atoms, 9950 bonds, 1220 residues, 21 models selected 
    19184 
    19185 > view matrix models #18,1,0,0,-563.06,0,1,0,-280.22,0,0,1,-81.971
    19186 
    19187 > view matrix models #18,1,0,0,-548.17,0,1,0,-365.12,0,0,1,-224.09
    19188 
    19189 > view matrix models #18,1,0,0,-584.16,0,1,0,-178.03,0,0,1,-299.62
    19190 
    19191 > view matrix models #18,1,0,0,-529.26,0,1,0,-247.21,0,0,1,-290.01
    19192 
    19193 > hide #!19 models
    19194 
    19195 > hide #16 models
    19196 
    19197 > hide #!10 models
    19198 
    19199 > hide #!8 models
    19200 
    19201 > hide #!7 models
    19202 
    19203 > hide #!5 models
    19204 
    19205 > view matrix models #18,1,0,0,-535.14,0,1,0,-254.76,0,0,1,-314.65
    19206 
    19207 > view matrix models #18,1,0,0,-525.73,0,1,0,-256.3,0,0,1,-316.03
    19208 
    19209 > combine #18 modelId #20 name Cj-FliL
    19210 
    19211 Remapping chain ID 'B' in Cj-FliLringC17.pdb #18.2 to 'C' 
    19212 Remapping chain ID 'B' in Cj-FliLringC17.pdb #18.3 to 'D' 
    19213 Remapping chain ID 'B' in Cj-FliLringC17.pdb #18.4 to 'E' 
    19214 Remapping chain ID 'B' in Cj-FliLringC17.pdb #18.5 to 'F' 
    19215 Remapping chain ID 'B' in Cj-FliLringC17.pdb #18.6 to 'G' 
    19216 Remapping chain ID 'B' in Cj-FliLringC17.pdb #18.7 to 'H' 
    19217 Remapping chain ID 'B' in Cj-FliLringC17.pdb #18.8 to 'I' 
    19218 Remapping chain ID 'B' in Cj-FliLringC17.pdb #18.9 to 'J' 
    19219 Remapping chain ID 'B' in Cj-FliLringC17.pdb #18.10 to 'K' 
    19220 Remapping chain ID ' ' in Cj-FliLringC17.pdb #18.11 to 'A' 
    19221 Remapping chain ID ' ' in Cj-FliLringC17.pdb #18.12 to 'L' 
    19222 Remapping chain ID ' ' in Cj-FliLringC17.pdb #18.13 to 'M' 
    19223 Remapping chain ID ' ' in Cj-FliLringC17.pdb #18.14 to 'N' 
    19224 Remapping chain ID ' ' in Cj-FliLringC17.pdb #18.15 to 'O' 
    19225 Remapping chain ID ' ' in Cj-FliLringC17.pdb #18.16 to 'P' 
    19226 Remapping chain ID ' ' in Cj-FliLringC17.pdb #18.17 to 'Q' 
    19227 Remapping chain ID ' ' in Cj-FliLringC17.pdb #18.18 to 'R' 
    19228 Remapping chain ID ' ' in Cj-FliLringC17.pdb #18.19 to 'S' 
    19229 Remapping chain ID ' ' in Cj-FliLringC17.pdb #18.20 to 'T' 
    19230 
    19231 > select subtract #18
    19232 
    19233 Nothing selected 
    19234 
    19235 > hide #!18 models
    19236 
    19237 > select add #20
    19238 
    19239 9850 atoms, 9950 bonds, 1220 residues, 1 model selected 
    19240 
    19241 > fitmap #20 inMap #4
    19242 
    19243 Fit molecule Cj-FliL (#20) to map FliL.mrc gaussian (#4) using 9850 atoms 
    19244 average map value = 0.01285, steps = 124 
    19245 shifted from previous position = 7.8 
    19246 rotated from previous position = 27.4 degrees 
    19247 atoms outside contour = 4114, contour level = 0.0029 
    19248  
    19249 Position of Cj-FliL (#20) relative to FliL.mrc gaussian (#4) coordinates: 
    19250 Matrix rotation and translation 
    19251 0.94102639 0.01215047 0.33811493 -645.76339539 
    19252 -0.12192253 0.94438907 0.30539185 -270.36425430 
    19253 -0.31560139 -0.32860561 0.89017645 158.93123829 
    19254 Axis -0.68877240 0.71019490 -0.14565639 
    19255 Axis point 101.55935502 0.00000000 1459.84234590 
    19256 Rotation angle (degrees) 27.40241934 
    19257 Shift along axis 229.62333998 
    19258  
    19259 
    19260 > fitmap #20 inMap #4
    19261 
    19262 Fit molecule Cj-FliL (#20) to map FliL.mrc gaussian (#4) using 9850 atoms 
    19263 average map value = 0.01285, steps = 48 
    19264 shifted from previous position = 0.0435 
    19265 rotated from previous position = 0.0183 degrees 
    19266 atoms outside contour = 4116, contour level = 0.0029 
    19267  
    19268 Position of Cj-FliL (#20) relative to FliL.mrc gaussian (#4) coordinates: 
    19269 Matrix rotation and translation 
    19270 0.94110316 0.01231967 0.33789505 -645.83093702 
    19271 -0.12195683 0.94443396 0.30523928 -270.31144458 
    19272 -0.31535911 -0.32847026 0.89031226 158.62213340 
    19273 Axis -0.68883142 0.71007609 -0.14595626 
    19274 Axis point 101.31864999 0.00000000 1460.57780476 
    19275 Rotation angle (degrees) 27.38638790 
    19276 Shift along axis 229.77505253 
    19277  
    19278 
    19279 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    19280 > manuscript/Start_Aug_2024/CJ_FlgV_ST/Cj-FliLringC17.pdb
    19281 
    19282 Summary of feedback from opening
    19283 /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    19284 manuscript/Start_Aug_2024/CJ_FlgV_ST/Cj-FliLringC17.pdb 
    19285 --- 
    19286 warnings | Start residue of secondary structure not found: HELIX 1 1 ALA C 169 ASP C 182 1 14 
    19287 Start residue of secondary structure not found: HELIX 2 2 TYR C 186 ARG C 199
    19288 1 14 
    19289 Start residue of secondary structure not found: HELIX 3 3 THR C 206 TYR C 221
    19290 1 16 
    19291 Start residue of secondary structure not found: HELIX 4 4 GLN C 230 THR C 246
    19292 1 17 
    19293 Start residue of secondary structure not found: HELIX 5 5 PHE C 253 ALA C 266
    19294 1 14 
    19295 715 messages similar to the above omitted 
    19296  
    19297 Chain information for Cj-FliLringC17.pdb 
    19298 --- 
    19299 Chain | Description 
    19300 21.11/? 21.12/? 21.13/? 21.14/? 21.15/? 21.16/? 21.17/? 21.18/? 21.19/? 21.20/? | No description available 
    19301 21.1/B 21.2/B 21.3/B 21.4/B 21.5/B 21.6/B 21.7/B 21.8/B 21.9/B 21.10/B | No description available 
    19302  
    19303 
    19304 > select subtract #20
    19305 
    19306 Nothing selected 
    19307 
    19308 > hide #20 models
    19309 
    19310 > close #18
    19311 
    19312 > combine #21 modelId #18 name Cj-FliL
    19313 
    19314 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.2 to 'C' 
    19315 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.3 to 'D' 
    19316 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.4 to 'E' 
    19317 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.5 to 'F' 
    19318 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.6 to 'G' 
    19319 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.7 to 'H' 
    19320 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.8 to 'I' 
    19321 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.9 to 'J' 
    19322 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.10 to 'K' 
    19323 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.11 to 'A' 
    19324 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.12 to 'L' 
    19325 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.13 to 'M' 
    19326 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.14 to 'N' 
    19327 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.15 to 'O' 
    19328 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.16 to 'P' 
    19329 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.17 to 'Q' 
    19330 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.18 to 'R' 
    19331 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.19 to 'S' 
    19332 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.20 to 'T' 
    19333 
    19334 > select add #18
    19335 
    19336 9850 atoms, 9950 bonds, 1220 residues, 1 model selected 
    19337 
    19338 > view matrix models #18,1,0,0,-17.715,0,1,0,-133.96,0,0,1,18.357
    19339 
    19340 > view matrix models #18,1,0,0,-40.442,0,1,0,-341.63,0,0,1,-243.52
    19341 
    19342 > show #20 models
    19343 
    19344 > view matrix models #18,1,0,0,-266.44,0,1,0,-386.31,0,0,1,-485.51
    19345 
    19346 > view matrix models #18,1,0,0,-462.06,0,1,0,-235.61,0,0,1,-433.25
    19347 
    19348 > view matrix models #18,1,0,0,-509.52,0,1,0,-172.96,0,0,1,-466.54
    19349 
    19350 > view matrix models #18,1,0,0,-514.97,0,1,0,-145.22,0,0,1,-326.99
    19351 
    19352 > view matrix models #18,1,0,0,-530.51,0,1,0,-147.06,0,0,1,-334.39
    19353 
    19354 > fitmap #18 inMap #4
    19355 
    19356 Fit molecule Cj-FliL (#18) to map FliL.mrc gaussian (#4) using 9850 atoms 
    19357 average map value = 0.01222, steps = 128 
    19358 shifted from previous position = 15.9 
    19359 rotated from previous position = 27.1 degrees 
    19360 atoms outside contour = 4262, contour level = 0.0029 
    19361  
    19362 Position of Cj-FliL (#18) relative to FliL.mrc gaussian (#4) coordinates: 
    19363 Matrix rotation and translation 
    19364 0.97347543 0.11182108 0.19960370 -668.52021332 
    19365 -0.18250281 0.90566474 0.38270629 -124.05180923 
    19366 -0.13797941 -0.40898340 0.90205003 43.97468080 
    19367 Axis -0.87037687 0.37113598 -0.32357716 
    19368 Axis point 0.00000000 303.50292607 904.78157801 
    19369 Rotation angle (degrees) 27.05187769 
    19370 Shift along axis 521.59524082 
    19371  
    19372 
    19373 > fitmap #18 inMap #4
    19374 
    19375 Fit molecule Cj-FliL (#18) to map FliL.mrc gaussian (#4) using 9850 atoms 
    19376 average map value = 0.01222, steps = 44 
    19377 shifted from previous position = 0.0133 
    19378 rotated from previous position = 0.0193 degrees 
    19379 atoms outside contour = 4260, contour level = 0.0029 
    19380  
    19381 Position of Cj-FliL (#18) relative to FliL.mrc gaussian (#4) coordinates: 
    19382 Matrix rotation and translation 
    19383 0.97344914 0.11187129 0.19970373 -668.56847363 
    19384 -0.18254518 0.90578463 0.38240223 -123.94269269 
    19385 -0.13810874 -0.40870407 0.90215684 43.90161217 
    19386 Axis -0.87011101 0.37154849 -0.32381870 
    19387 Axis point 0.00000000 303.77005735 905.61942679 
    19388 Rotation angle (degrees) 27.03925105 
    19389 Shift along axis 521.46190660 
    19390  
    19391 
    19392 > fitmap #18 inMap #4
    19393 
    19394 Fit molecule Cj-FliL (#18) to map FliL.mrc gaussian (#4) using 9850 atoms 
    19395 average map value = 0.01222, steps = 28 
    19396 shifted from previous position = 0.0119 
    19397 rotated from previous position = 0.00767 degrees 
    19398 atoms outside contour = 4259, contour level = 0.0029 
    19399  
    19400 Position of Cj-FliL (#18) relative to FliL.mrc gaussian (#4) coordinates: 
    19401 Matrix rotation and translation 
    19402 0.97343461 0.11195548 0.19972740 -668.60903994 
    19403 -0.18264464 0.90573382 0.38247508 -123.87978882 
    19404 -0.13807968 -0.40879362 0.90212071 43.93733564 
    19405 Axis -0.87009939 0.37146136 -0.32394986 
    19406 Axis point 0.00000000 303.98954245 905.30120865 
    19407 Rotation angle (degrees) 27.04564469 
    19408 Shift along axis 521.50626848 
    19409  
    19410 
    19411 > fitmap #18 inMap #4
    19412 
    19413 Fit molecule Cj-FliL (#18) to map FliL.mrc gaussian (#4) using 9850 atoms 
    19414 average map value = 0.01222, steps = 40 
    19415 shifted from previous position = 0.0241 
    19416 rotated from previous position = 0.0219 degrees 
    19417 atoms outside contour = 4263, contour level = 0.0029 
    19418  
    19419 Position of Cj-FliL (#18) relative to FliL.mrc gaussian (#4) coordinates: 
    19420 Matrix rotation and translation 
    19421 0.97346986 0.11182028 0.19963131 -668.52957119 
    19422 -0.18253076 0.90561199 0.38281777 -124.05437106 
    19423 -0.13798172 -0.40910041 0.90199662 44.05927998 
    19424 Axis -0.87041873 0.37107962 -0.32352920 
    19425 Axis point 0.00000000 303.52185212 904.51087593 
    19426 Rotation angle (degrees) 27.05891488 
    19427 Shift along axis 521.61214860 
    19428  
    19429 
    19430 > combine #21 modelId #22 name Cj-FliL
    19431 
    19432 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.2 to 'C' 
    19433 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.3 to 'D' 
    19434 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.4 to 'E' 
    19435 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.5 to 'F' 
    19436 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.6 to 'G' 
    19437 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.7 to 'H' 
    19438 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.8 to 'I' 
    19439 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.9 to 'J' 
    19440 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.10 to 'K' 
    19441 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.11 to 'A' 
    19442 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.12 to 'L' 
    19443 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.13 to 'M' 
    19444 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.14 to 'N' 
    19445 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.15 to 'O' 
    19446 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.16 to 'P' 
    19447 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.17 to 'Q' 
    19448 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.18 to 'R' 
    19449 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.19 to 'S' 
    19450 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.20 to 'T' 
    19451 
    19452 > close #21
    19453 
    19454 > select add #22
    19455 
    19456 19700 atoms, 19900 bonds, 2440 residues, 2 models selected 
    19457 
    19458 > select subtract #18
    19459 
    19460 9850 atoms, 9950 bonds, 1220 residues, 1 model selected 
    19461 
    19462 > view matrix models #22,1,0,0,11.87,0,1,0,-455.3,0,0,1,-341.08
    19463 
    19464 > view matrix models #22,1,0,0,-507.9,0,1,0,-338.33,0,0,1,-160.15
    19465 
    19466 > view matrix models #22,1,0,0,-568.6,0,1,0,-385.42,0,0,1,-312.91
    19467 
    19468 > view matrix models #22,1,0,0,-557.67,0,1,0,-367.42,0,0,1,-315.9
    19469 
    19470 > fitmap #22 inMap #4
    19471 
    19472 Fit molecule Cj-FliL (#22) to map FliL.mrc gaussian (#4) using 9850 atoms 
    19473 average map value = 0.01111, steps = 152 
    19474 shifted from previous position = 8 
    19475 rotated from previous position = 30.2 degrees 
    19476 atoms outside contour = 4331, contour level = 0.0029 
    19477  
    19478 Position of Cj-FliL (#22) relative to FliL.mrc gaussian (#4) coordinates: 
    19479 Matrix rotation and translation 
    19480 0.88960038 0.01753559 0.45640296 -691.78157037 
    19481 -0.12269540 0.97170740 0.20181816 -343.47684430 
    19482 -0.43995113 -0.23553606 0.86658281 228.11215813 
    19483 Axis -0.43424014 0.88997180 -0.13923251 
    19484 Axis point 33.94104032 0.00000000 1559.18250017 
    19485 Rotation angle (degrees) 30.23751103 
    19486 Shift along axis -37.04601017 
    19487  
    19488 
    19489 > fitmap #22 inMap #4
    19490 
    19491 Fit molecule Cj-FliL (#22) to map FliL.mrc gaussian (#4) using 9850 atoms 
    19492 average map value = 0.01111, steps = 44 
    19493 shifted from previous position = 0.0322 
    19494 rotated from previous position = 0.0603 degrees 
    19495 atoms outside contour = 4334, contour level = 0.0029 
    19496  
    19497 Position of Cj-FliL (#22) relative to FliL.mrc gaussian (#4) coordinates: 
    19498 Matrix rotation and translation 
    19499 0.88948500 0.01849848 0.45658979 -692.23623286 
    19500 -0.12373404 0.97160376 0.20168296 -342.51158062 
    19501 -0.43989353 -0.23588967 0.86651587 228.26163190 
    19502 Axis -0.43424554 0.88966690 -0.14115105 
    19503 Axis point 34.18728538 0.00000000 1558.93754237 
    19504 Rotation angle (degrees) 30.25377436 
    19505 Shift along axis -36.34008748 
    19506  
    19507 
    19508 > select subtract #22
    19509 
    19510 Nothing selected 
    19511 
    19512 > show #!19 models
    19513 
    19514 > show #16 models
    19515 
    19516 > show #!5 models
    19517 
    19518 > show #!7 models
    19519 
    19520 > hide #!7 models
    19521 
    19522 > show #!7 models
    19523 
    19524 > hide #!7 models
    19525 
    19526 > show #!7 models
    19527 
    19528 > hide #!7 models
    19529 
    19530 > show #!7 models
    19531 
    19532 > hide #!7 models
    19533 
    19534 > show #!7 models
    19535 
    19536 > show #!1.6 models
    19537 
    19538 > hide #!1.6 models
    19539 
    19540 > show #!1.6 models
    19541 
    19542 > hide #!1.6 models
    19543 
    19544 > ui tool show Segmentations
    19545 
    19546 > ui view fourup
    19547 
    19548 > segmentations mouseModes false
    19549 
    19550 Mouse bindings not saved; ignoring 'mouseModes false' 
    19551 
    19552 > ui view fourup
    19553 
    19554 > undo
    19555 
    19556 > segmentations mouseModes false
    19557 
    19558 Mouse bindings not saved; ignoring 'mouseModes false' 
    19559 
    19560 The cached device pixel ratio value was stale on window expose. Please file a
    19561 QTBUG which explains how to reproduce. 
    19562 
    19563 [Repeated 1 time(s)]
    19564 
    19565 > close #24
    19566 
    19567 > close #23
    19568 
    19569 > close #21
    19570 
    19571 Traceback (most recent call last): 
    19572 File
    19573 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19574 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    19575 self.enterEvent() 
    19576 File
    19577 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19578 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    19579 self.segmentation_tool.make_puck_visible(self.axis) 
    19580 File
    19581 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19582 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    19583 make_puck_visible 
    19584 self.segmentation_cursors[axis].display = True 
    19585 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19586 File
    19587 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19588 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    19589 super(Drawing, self).__setattr__(key, value) 
    19590 File
    19591 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19592 packages/chimerax/core/models.py", line 345, in _set_display 
    19593 Drawing.set_display(self, display) 
    19594 File
    19595 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19596 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    19597 dp = self.display_positions 
    19598 ^^^^^^^^^^^^^^^^^^^^^^ 
    19599 File
    19600 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19601 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    19602 dp = ones((len(self._positions),), bool) 
    19603 ^^^^^^^^^^^^^^^^^^^^ 
    19604 TypeError: object of type 'NoneType' has no len() 
    19605  
    19606 Error in sys.excepthook: 
    19607 Traceback (most recent call last): 
    19608 File
    19609 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19610 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    19611 self.leaveEvent() 
    19612 File
    19613 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19614 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    19615 self.segmentation_tool.make_puck_invisible(self.axis) 
    19616 File
    19617 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19618 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    19619 make_puck_invisible 
    19620 self.segmentation_cursors[axis].display = False 
    19621 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19622 File
    19623 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19624 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    19625 super(Drawing, self).__setattr__(key, value) 
    19626 File
    19627 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19628 packages/chimerax/core/models.py", line 345, in _set_display 
    19629 Drawing.set_display(self, display) 
    19630 File
    19631 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19632 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    19633 dp = self.display_positions 
    19634 ^^^^^^^^^^^^^^^^^^^^^^ 
    19635 File
    19636 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19637 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    19638 dp = ones((len(self._positions),), bool) 
    19639 ^^^^^^^^^^^^^^^^^^^^ 
    19640 TypeError: object of type 'NoneType' has no len() 
    19641  
    19642 The above exception was the direct cause of the following exception: 
    19643  
    19644 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    19645 set 
    19646  
    19647 The above exception was the direct cause of the following exception: 
    19648  
    19649 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    19650 set 
    19651  
    19652 The above exception was the direct cause of the following exception: 
    19653  
    19654 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    19655 set 
    19656  
    19657 The above exception was the direct cause of the following exception: 
    19658  
    19659 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    19660 set 
    19661  
    19662 The above exception was the direct cause of the following exception: 
    19663  
    19664 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    19665 set 
    19666  
    19667 The above exception was the direct cause of the following exception: 
    19668  
    19669 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    19670 set 
    19671  
    19672 The above exception was the direct cause of the following exception: 
    19673  
    19674 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    19675 exception set 
    19676  
    19677 The above exception was the direct cause of the following exception: 
    19678  
    19679 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    19680 exception set 
    19681  
    19682 The above exception was the direct cause of the following exception: 
    19683  
    19684 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    19685 exception set 
    19686  
    19687 The above exception was the direct cause of the following exception: 
    19688  
    19689 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    19690 exception set 
    19691  
    19692 The above exception was the direct cause of the following exception: 
    19693  
    19694 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    19695 exception set 
    19696  
    19697 The above exception was the direct cause of the following exception: 
    19698  
    19699 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    19700 exception set 
    19701  
    19702 The above exception was the direct cause of the following exception: 
    19703  
    19704 Traceback (most recent call last): 
    19705 File
    19706 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19707 packages/chimerax/core/logger.py", line 334, in ehook 
    19708 self.session.ui.thread_safe( 
    19709 File
    19710 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19711 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    19712 func(*args, **kw) 
    19713 File
    19714 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19715 packages/chimerax/core/logger.py", line 516, in report_exception 
    19716 self.bug(err_msg.replace("\n", "<br>"), is_html=True) 
    19717 File
    19718 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19719 packages/chimerax/core/logger.py", line 394, in bug 
    19720 self._log( 
    19721 File
    19722 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19723 packages/chimerax/core/logger.py", line 572, in _log 
    19724 if log.log(*args): 
    19725 ^^^^^^^^^^^^^^ 
    19726 File
    19727 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19728 packages/chimerax/log/tool.py", line 342, in log 
    19729 self.session.ui.thread_safe(f) 
    19730 File
    19731 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19732 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    19733 func(*args, **kw) 
    19734 File
    19735 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19736 packages/chimerax/log/tool.py", line 341, in <lambda> 
    19737 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    19738 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19739 File
    19740 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19741 packages/chimerax/log/tool.py", line 262, in show_error_message 
    19742 ed.showMessage(msg) 
    19743 SystemError: <built-in method showMessage of BiggerErrorDialog object at
    19744 0x16be8d240> returned a result with an exception set 
    19745  
    19746 Original exception was: 
    19747 Traceback (most recent call last): 
    19748 File
    19749 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19750 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    19751 self.enterEvent() 
    19752 File
    19753 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19754 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    19755 self.segmentation_tool.make_puck_visible(self.axis) 
    19756 File
    19757 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19758 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    19759 make_puck_visible 
    19760 self.segmentation_cursors[axis].display = True 
    19761 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19762 File
    19763 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19764 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    19765 super(Drawing, self).__setattr__(key, value) 
    19766 File
    19767 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19768 packages/chimerax/core/models.py", line 345, in _set_display 
    19769 Drawing.set_display(self, display) 
    19770 File
    19771 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19772 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    19773 dp = self.display_positions 
    19774 ^^^^^^^^^^^^^^^^^^^^^^ 
    19775 File
    19776 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19777 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    19778 dp = ones((len(self._positions),), bool) 
    19779 ^^^^^^^^^^^^^^^^^^^^ 
    19780 TypeError: object of type 'NoneType' has no len() 
    19781 Traceback (most recent call last): 
    19782 File
    19783 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19784 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    19785 self.enterEvent() 
    19786 File
    19787 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19788 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    19789 self.segmentation_tool.make_puck_visible(self.axis) 
    19790 File
    19791 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19792 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    19793 make_puck_visible 
    19794 self.segmentation_cursors[axis].display = True 
    19795 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19796 File
    19797 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19798 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    19799 super(Drawing, self).__setattr__(key, value) 
    19800 File
    19801 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19802 packages/chimerax/core/models.py", line 345, in _set_display 
    19803 Drawing.set_display(self, display) 
    19804 File
    19805 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19806 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    19807 dp = self.display_positions 
    19808 ^^^^^^^^^^^^^^^^^^^^^^ 
    19809 File
    19810 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19811 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    19812 dp = ones((len(self._positions),), bool) 
    19813 ^^^^^^^^^^^^^^^^^^^^ 
    19814 TypeError: object of type 'NoneType' has no len() 
    19815  
    19816 Error in sys.excepthook: 
    19817 Traceback (most recent call last): 
    19818 File
    19819 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19820 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    19821 self.leaveEvent() 
    19822 File
    19823 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19824 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    19825 self.segmentation_tool.make_puck_invisible(self.axis) 
    19826 File
    19827 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19828 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    19829 make_puck_invisible 
    19830 self.segmentation_cursors[axis].display = False 
    19831 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19832 File
    19833 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19834 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    19835 super(Drawing, self).__setattr__(key, value) 
    19836 File
    19837 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19838 packages/chimerax/core/models.py", line 345, in _set_display 
    19839 Drawing.set_display(self, display) 
    19840 File
    19841 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19842 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    19843 dp = self.display_positions 
    19844 ^^^^^^^^^^^^^^^^^^^^^^ 
    19845 File
    19846 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19847 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    19848 dp = ones((len(self._positions),), bool) 
    19849 ^^^^^^^^^^^^^^^^^^^^ 
    19850 TypeError: object of type 'NoneType' has no len() 
    19851  
    19852 The above exception was the direct cause of the following exception: 
    19853  
    19854 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    19855 set 
    19856  
    19857 The above exception was the direct cause of the following exception: 
    19858  
    19859 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    19860 set 
    19861  
    19862 The above exception was the direct cause of the following exception: 
    19863  
    19864 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    19865 set 
    19866  
    19867 The above exception was the direct cause of the following exception: 
    19868  
    19869 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    19870 set 
    19871  
    19872 The above exception was the direct cause of the following exception: 
    19873  
    19874 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    19875 set 
    19876  
    19877 The above exception was the direct cause of the following exception: 
    19878  
    19879 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    19880 set 
    19881  
    19882 The above exception was the direct cause of the following exception: 
    19883  
    19884 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    19885 exception set 
    19886  
    19887 The above exception was the direct cause of the following exception: 
    19888  
    19889 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    19890 exception set 
    19891  
    19892 The above exception was the direct cause of the following exception: 
    19893  
    19894 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    19895 exception set 
    19896  
    19897 The above exception was the direct cause of the following exception: 
    19898  
    19899 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    19900 exception set 
    19901  
    19902 The above exception was the direct cause of the following exception: 
    19903  
    19904 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    19905 exception set 
    19906  
    19907 The above exception was the direct cause of the following exception: 
    19908  
    19909 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    19910 exception set 
    19911  
    19912 The above exception was the direct cause of the following exception: 
    19913  
    19914 Traceback (most recent call last): 
    19915 File
    19916 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19917 packages/chimerax/core/logger.py", line 334, in ehook 
    19918 self.session.ui.thread_safe( 
    19919 File
    19920 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19921 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    19922 func(*args, **kw) 
    19923 File
    19924 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19925 packages/chimerax/core/logger.py", line 516, in report_exception 
    19926 self.bug(err_msg.replace("\n", "<br>"), is_html=True) 
    19927 File
    19928 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19929 packages/chimerax/core/logger.py", line 394, in bug 
    19930 self._log( 
    19931 File
    19932 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19933 packages/chimerax/core/logger.py", line 572, in _log 
    19934 if log.log(*args): 
    19935 ^^^^^^^^^^^^^^ 
    19936 File
    19937 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19938 packages/chimerax/log/tool.py", line 342, in log 
    19939 self.session.ui.thread_safe(f) 
    19940 File
    19941 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19942 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    19943 func(*args, **kw) 
    19944 File
    19945 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19946 packages/chimerax/log/tool.py", line 341, in <lambda> 
    19947 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    19948 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19949 File
    19950 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19951 packages/chimerax/log/tool.py", line 262, in show_error_message 
    19952 ed.showMessage(msg) 
    19953 SystemError: <built-in method showMessage of BiggerErrorDialog object at
    19954 0x16be8d240> returned a result with an exception set 
    19955  
    19956 Original exception was: 
    19957 Traceback (most recent call last): 
    19958 File
    19959 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19960 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    19961 self.enterEvent() 
    19962 File
    19963 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19964 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    19965 self.segmentation_tool.make_puck_visible(self.axis) 
    19966 File
    19967 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19968 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    19969 make_puck_visible 
    19970 self.segmentation_cursors[axis].display = True 
    19971 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19972 File
    19973 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19974 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    19975 super(Drawing, self).__setattr__(key, value) 
    19976 File
    19977 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19978 packages/chimerax/core/models.py", line 345, in _set_display 
    19979 Drawing.set_display(self, display) 
    19980 File
    19981 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19982 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    19983 dp = self.display_positions 
    19984 ^^^^^^^^^^^^^^^^^^^^^^ 
    19985 File
    19986 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19987 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    19988 dp = ones((len(self._positions),), bool) 
    19989 ^^^^^^^^^^^^^^^^^^^^ 
    19990 TypeError: object of type 'NoneType' has no len() 
    19991 Traceback (most recent call last): 
    19992 File
    19993 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19994 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    19995 self.enterEvent() 
    19996 File
    19997 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19998 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    19999 self.segmentation_tool.make_puck_visible(self.axis) 
    20000 File
    20001 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20002 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    20003 make_puck_visible 
    20004 self.segmentation_cursors[axis].display = True 
    20005 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20006 File
    20007 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20008 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    20009 super(Drawing, self).__setattr__(key, value) 
    20010 File
    20011 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20012 packages/chimerax/core/models.py", line 345, in _set_display 
    20013 Drawing.set_display(self, display) 
    20014 File
    20015 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20016 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    20017 dp = self.display_positions 
    20018 ^^^^^^^^^^^^^^^^^^^^^^ 
    20019 File
    20020 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20021 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    20022 dp = ones((len(self._positions),), bool) 
    20023 ^^^^^^^^^^^^^^^^^^^^ 
    20024 TypeError: object of type 'NoneType' has no len() 
    20025  
    20026 Error in sys.excepthook: 
    20027 Traceback (most recent call last): 
    20028 File
    20029 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20030 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    20031 self.leaveEvent() 
    20032 File
    20033 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20034 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    20035 self.segmentation_tool.make_puck_invisible(self.axis) 
    20036 File
    20037 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20038 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    20039 make_puck_invisible 
    20040 self.segmentation_cursors[axis].display = False 
    20041 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20042 File
    20043 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20044 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    20045 super(Drawing, self).__setattr__(key, value) 
    20046 File
    20047 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20048 packages/chimerax/core/models.py", line 345, in _set_display 
    20049 Drawing.set_display(self, display) 
    20050 File
    20051 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20052 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    20053 dp = self.display_positions 
    20054 ^^^^^^^^^^^^^^^^^^^^^^ 
    20055 File
    20056 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20057 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    20058 dp = ones((len(self._positions),), bool) 
    20059 ^^^^^^^^^^^^^^^^^^^^ 
    20060 TypeError: object of type 'NoneType' has no len() 
    20061  
    20062 The above exception was the direct cause of the following exception: 
    20063  
    20064 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20065 set 
    20066  
    20067 The above exception was the direct cause of the following exception: 
    20068  
    20069 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20070 set 
    20071  
    20072 The above exception was the direct cause of the following exception: 
    20073  
    20074 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20075 set 
    20076  
    20077 The above exception was the direct cause of the following exception: 
    20078  
    20079 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20080 set 
    20081  
    20082 The above exception was the direct cause of the following exception: 
    20083  
    20084 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20085 set 
    20086  
    20087 The above exception was the direct cause of the following exception: 
    20088  
    20089 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20090 set 
    20091  
    20092 The above exception was the direct cause of the following exception: 
    20093  
    20094 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    20095 exception set 
    20096  
    20097 The above exception was the direct cause of the following exception: 
    20098  
    20099 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    20100 exception set 
    20101  
    20102 The above exception was the direct cause of the following exception: 
    20103  
    20104 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    20105 exception set 
    20106  
    20107 The above exception was the direct cause of the following exception: 
    20108  
    20109 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    20110 exception set 
    20111  
    20112 The above exception was the direct cause of the following exception: 
    20113  
    20114 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    20115 exception set 
    20116  
    20117 The above exception was the direct cause of the following exception: 
    20118  
    20119 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    20120 exception set 
    20121  
    20122 The above exception was the direct cause of the following exception: 
    20123  
    20124 Traceback (most recent call last): 
    20125 File
    20126 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20127 packages/chimerax/core/logger.py", line 334, in ehook 
    20128 self.session.ui.thread_safe( 
    20129 File
    20130 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20131 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    20132 func(*args, **kw) 
    20133 File
    20134 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20135 packages/chimerax/core/logger.py", line 516, in report_exception 
    20136 self.bug(err_msg.replace("\n", "<br>"), is_html=True) 
    20137 File
    20138 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20139 packages/chimerax/core/logger.py", line 394, in bug 
    20140 self._log( 
    20141 File
    20142 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20143 packages/chimerax/core/logger.py", line 572, in _log 
    20144 if log.log(*args): 
    20145 ^^^^^^^^^^^^^^ 
    20146 File
    20147 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20148 packages/chimerax/log/tool.py", line 342, in log 
    20149 self.session.ui.thread_safe(f) 
    20150 File
    20151 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20152 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    20153 func(*args, **kw) 
    20154 File
    20155 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20156 packages/chimerax/log/tool.py", line 341, in <lambda> 
    20157 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    20158 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20159 File
    20160 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20161 packages/chimerax/log/tool.py", line 262, in show_error_message 
    20162 ed.showMessage(msg) 
    20163 SystemError: <built-in method showMessage of BiggerErrorDialog object at
    20164 0x16be8d240> returned a result with an exception set 
    20165  
    20166 Original exception was: 
    20167 Traceback (most recent call last): 
    20168 File
    20169 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20170 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    20171 self.enterEvent() 
    20172 File
    20173 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20174 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    20175 self.segmentation_tool.make_puck_visible(self.axis) 
    20176 File
    20177 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20178 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    20179 make_puck_visible 
    20180 self.segmentation_cursors[axis].display = True 
    20181 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20182 File
    20183 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20184 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    20185 super(Drawing, self).__setattr__(key, value) 
    20186 File
    20187 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20188 packages/chimerax/core/models.py", line 345, in _set_display 
    20189 Drawing.set_display(self, display) 
    20190 File
    20191 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20192 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    20193 dp = self.display_positions 
    20194 ^^^^^^^^^^^^^^^^^^^^^^ 
    20195 File
    20196 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20197 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    20198 dp = ones((len(self._positions),), bool) 
    20199 ^^^^^^^^^^^^^^^^^^^^ 
    20200 TypeError: object of type 'NoneType' has no len() 
    20201 Traceback (most recent call last): 
    20202 File
    20203 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20204 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    20205 self.enterEvent() 
    20206 File
    20207 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20208 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    20209 self.segmentation_tool.make_puck_visible(self.axis) 
    20210 File
    20211 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20212 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    20213 make_puck_visible 
    20214 self.segmentation_cursors[axis].display = True 
    20215 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20216 File
    20217 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20218 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    20219 super(Drawing, self).__setattr__(key, value) 
    20220 File
    20221 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20222 packages/chimerax/core/models.py", line 345, in _set_display 
    20223 Drawing.set_display(self, display) 
    20224 File
    20225 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20226 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    20227 dp = self.display_positions 
    20228 ^^^^^^^^^^^^^^^^^^^^^^ 
    20229 File
    20230 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20231 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    20232 dp = ones((len(self._positions),), bool) 
    20233 ^^^^^^^^^^^^^^^^^^^^ 
    20234 TypeError: object of type 'NoneType' has no len() 
    20235  
    20236 Error in sys.excepthook: 
    20237 Traceback (most recent call last): 
    20238 File
    20239 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20240 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    20241 self.leaveEvent() 
    20242 File
    20243 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20244 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    20245 self.segmentation_tool.make_puck_invisible(self.axis) 
    20246 File
    20247 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20248 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    20249 make_puck_invisible 
    20250 self.segmentation_cursors[axis].display = False 
    20251 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20252 File
    20253 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20254 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    20255 super(Drawing, self).__setattr__(key, value) 
    20256 File
    20257 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20258 packages/chimerax/core/models.py", line 345, in _set_display 
    20259 Drawing.set_display(self, display) 
    20260 File
    20261 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20262 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    20263 dp = self.display_positions 
    20264 ^^^^^^^^^^^^^^^^^^^^^^ 
    20265 File
    20266 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20267 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    20268 dp = ones((len(self._positions),), bool) 
    20269 ^^^^^^^^^^^^^^^^^^^^ 
    20270 TypeError: object of type 'NoneType' has no len() 
    20271  
    20272 The above exception was the direct cause of the following exception: 
    20273  
    20274 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20275 set 
    20276  
    20277 The above exception was the direct cause of the following exception: 
    20278  
    20279 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20280 set 
    20281  
    20282 The above exception was the direct cause of the following exception: 
    20283  
    20284 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20285 set 
    20286  
    20287 The above exception was the direct cause of the following exception: 
    20288  
    20289 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20290 set 
    20291  
    20292 The above exception was the direct cause of the following exception: 
    20293  
    20294 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20295 set 
    20296  
    20297 The above exception was the direct cause of the following exception: 
    20298  
    20299 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20300 set 
    20301  
    20302 The above exception was the direct cause of the following exception: 
    20303  
    20304 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    20305 exception set 
    20306  
    20307 The above exception was the direct cause of the following exception: 
    20308  
    20309 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    20310 exception set 
    20311  
    20312 The above exception was the direct cause of the following exception: 
    20313  
    20314 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    20315 exception set 
    20316  
    20317 The above exception was the direct cause of the following exception: 
    20318  
    20319 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    20320 exception set 
    20321  
    20322 The above exception was the direct cause of the following exception: 
    20323  
    20324 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    20325 exception set 
    20326  
    20327 The above exception was the direct cause of the following exception: 
    20328  
    20329 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    20330 exception set 
    20331  
    20332 The above exception was the direct cause of the following exception: 
    20333  
    20334 Traceback (most recent call last): 
    20335 File
    20336 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20337 packages/chimerax/core/logger.py", line 334, in ehook 
    20338 self.session.ui.thread_safe( 
    20339 File
    20340 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20341 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    20342 func(*args, **kw) 
    20343 File
    20344 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20345 packages/chimerax/core/logger.py", line 516, in report_exception 
    20346 self.bug(err_msg.replace("\n", "<br>"), is_html=True) 
    20347 File
    20348 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20349 packages/chimerax/core/logger.py", line 394, in bug 
    20350 self._log( 
    20351 File
    20352 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20353 packages/chimerax/core/logger.py", line 572, in _log 
    20354 if log.log(*args): 
    20355 ^^^^^^^^^^^^^^ 
    20356 File
    20357 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20358 packages/chimerax/log/tool.py", line 342, in log 
    20359 self.session.ui.thread_safe(f) 
    20360 File
    20361 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20362 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    20363 func(*args, **kw) 
    20364 File
    20365 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20366 packages/chimerax/log/tool.py", line 341, in <lambda> 
    20367 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    20368 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20369 File
    20370 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20371 packages/chimerax/log/tool.py", line 262, in show_error_message 
    20372 ed.showMessage(msg) 
    20373 SystemError: <built-in method showMessage of BiggerErrorDialog object at
    20374 0x16be8d240> returned a result with an exception set 
    20375  
    20376 Original exception was: 
    20377 Traceback (most recent call last): 
    20378 File
    20379 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20380 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    20381 self.enterEvent() 
    20382 File
    20383 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20384 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    20385 self.segmentation_tool.make_puck_visible(self.axis) 
    20386 File
    20387 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20388 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    20389 make_puck_visible 
    20390 self.segmentation_cursors[axis].display = True 
    20391 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20392 File
    20393 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20394 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    20395 super(Drawing, self).__setattr__(key, value) 
    20396 File
    20397 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20398 packages/chimerax/core/models.py", line 345, in _set_display 
    20399 Drawing.set_display(self, display) 
    20400 File
    20401 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20402 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    20403 dp = self.display_positions 
    20404 ^^^^^^^^^^^^^^^^^^^^^^ 
    20405 File
    20406 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20407 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    20408 dp = ones((len(self._positions),), bool) 
    20409 ^^^^^^^^^^^^^^^^^^^^ 
    20410 TypeError: object of type 'NoneType' has no len() 
    20411 Traceback (most recent call last): 
    20412 File
    20413 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20414 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    20415 self.enterEvent() 
    20416 File
    20417 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20418 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    20419 self.segmentation_tool.make_puck_visible(self.axis) 
    20420 File
    20421 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20422 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    20423 make_puck_visible 
    20424 self.segmentation_cursors[axis].display = True 
    20425 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20426 File
    20427 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20428 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    20429 super(Drawing, self).__setattr__(key, value) 
    20430 File
    20431 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20432 packages/chimerax/core/models.py", line 345, in _set_display 
    20433 Drawing.set_display(self, display) 
    20434 File
    20435 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20436 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    20437 dp = self.display_positions 
    20438 ^^^^^^^^^^^^^^^^^^^^^^ 
    20439 File
    20440 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20441 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    20442 dp = ones((len(self._positions),), bool) 
    20443 ^^^^^^^^^^^^^^^^^^^^ 
    20444 TypeError: object of type 'NoneType' has no len() 
    20445  
    20446 Error in sys.excepthook: 
    20447 Traceback (most recent call last): 
    20448 File
    20449 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20450 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    20451 self.leaveEvent() 
    20452 File
    20453 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20454 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    20455 self.segmentation_tool.make_puck_invisible(self.axis) 
    20456 File
    20457 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20458 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    20459 make_puck_invisible 
    20460 self.segmentation_cursors[axis].display = False 
    20461 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20462 File
    20463 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20464 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    20465 super(Drawing, self).__setattr__(key, value) 
    20466 File
    20467 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20468 packages/chimerax/core/models.py", line 345, in _set_display 
    20469 Drawing.set_display(self, display) 
    20470 File
    20471 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20472 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    20473 dp = self.display_positions 
    20474 ^^^^^^^^^^^^^^^^^^^^^^ 
    20475 File
    20476 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20477 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    20478 dp = ones((len(self._positions),), bool) 
    20479 ^^^^^^^^^^^^^^^^^^^^ 
    20480 TypeError: object of type 'NoneType' has no len() 
    20481  
    20482 The above exception was the direct cause of the following exception: 
    20483  
    20484 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20485 set 
    20486  
    20487 The above exception was the direct cause of the following exception: 
    20488  
    20489 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20490 set 
    20491  
    20492 The above exception was the direct cause of the following exception: 
    20493  
    20494 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20495 set 
    20496  
    20497 The above exception was the direct cause of the following exception: 
    20498  
    20499 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20500 set 
    20501  
    20502 The above exception was the direct cause of the following exception: 
    20503  
    20504 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20505 set 
    20506  
    20507 The above exception was the direct cause of the following exception: 
    20508  
    20509 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20510 set 
    20511  
    20512 The above exception was the direct cause of the following exception: 
    20513  
    20514 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    20515 exception set 
    20516  
    20517 The above exception was the direct cause of the following exception: 
    20518  
    20519 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    20520 exception set 
    20521  
    20522 The above exception was the direct cause of the following exception: 
    20523  
    20524 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    20525 exception set 
    20526  
    20527 The above exception was the direct cause of the following exception: 
    20528  
    20529 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    20530 exception set 
    20531  
    20532 The above exception was the direct cause of the following exception: 
    20533  
    20534 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    20535 exception set 
    20536  
    20537 The above exception was the direct cause of the following exception: 
    20538  
    20539 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    20540 exception set 
    20541  
    20542 The above exception was the direct cause of the following exception: 
    20543  
    20544 Traceback (most recent call last): 
    20545 File
    20546 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20547 packages/chimerax/core/logger.py", line 334, in ehook 
    20548 self.session.ui.thread_safe( 
    20549 File
    20550 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20551 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    20552 func(*args, **kw) 
    20553 File
    20554 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20555 packages/chimerax/core/logger.py", line 516, in report_exception 
    20556 self.bug(err_msg.replace("\n", "<br>"), is_html=True) 
    20557 File
    20558 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20559 packages/chimerax/core/logger.py", line 394, in bug 
    20560 self._log( 
    20561 File
    20562 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20563 packages/chimerax/core/logger.py", line 572, in _log 
    20564 if log.log(*args): 
    20565 ^^^^^^^^^^^^^^ 
    20566 File
    20567 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20568 packages/chimerax/log/tool.py", line 342, in log 
    20569 self.session.ui.thread_safe(f) 
    20570 File
    20571 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20572 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    20573 func(*args, **kw) 
    20574 File
    20575 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20576 packages/chimerax/log/tool.py", line 341, in <lambda> 
    20577 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    20578 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20579 File
    20580 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20581 packages/chimerax/log/tool.py", line 262, in show_error_message 
    20582 ed.showMessage(msg) 
    20583 SystemError: <built-in method showMessage of BiggerErrorDialog object at
    20584 0x16be8d240> returned a result with an exception set 
    20585  
    20586 Original exception was: 
    20587 Traceback (most recent call last): 
    20588 File
    20589 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20590 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    20591 self.enterEvent() 
    20592 File
    20593 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20594 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    20595 self.segmentation_tool.make_puck_visible(self.axis) 
    20596 File
    20597 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20598 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    20599 make_puck_visible 
    20600 self.segmentation_cursors[axis].display = True 
    20601 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20602 File
    20603 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20604 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    20605 super(Drawing, self).__setattr__(key, value) 
    20606 File
    20607 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20608 packages/chimerax/core/models.py", line 345, in _set_display 
    20609 Drawing.set_display(self, display) 
    20610 File
    20611 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20612 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    20613 dp = self.display_positions 
    20614 ^^^^^^^^^^^^^^^^^^^^^^ 
    20615 File
    20616 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20617 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    20618 dp = ones((len(self._positions),), bool) 
    20619 ^^^^^^^^^^^^^^^^^^^^ 
    20620 TypeError: object of type 'NoneType' has no len() 
    20621 Traceback (most recent call last): 
    20622 File
    20623 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20624 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    20625 self.enterEvent() 
    20626 File
    20627 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20628 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    20629 self.segmentation_tool.make_puck_visible(self.axis) 
    20630 File
    20631 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20632 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    20633 make_puck_visible 
    20634 self.segmentation_cursors[axis].display = True 
    20635 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20636 File
    20637 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20638 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    20639 super(Drawing, self).__setattr__(key, value) 
    20640 File
    20641 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20642 packages/chimerax/core/models.py", line 345, in _set_display 
    20643 Drawing.set_display(self, display) 
    20644 File
    20645 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20646 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    20647 dp = self.display_positions 
    20648 ^^^^^^^^^^^^^^^^^^^^^^ 
    20649 File
    20650 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20651 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    20652 dp = ones((len(self._positions),), bool) 
    20653 ^^^^^^^^^^^^^^^^^^^^ 
    20654 TypeError: object of type 'NoneType' has no len() 
    20655  
    20656 Error in sys.excepthook: 
    20657 Traceback (most recent call last): 
    20658 File
    20659 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20660 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    20661 self.leaveEvent() 
    20662 File
    20663 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20664 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    20665 self.segmentation_tool.make_puck_invisible(self.axis) 
    20666 File
    20667 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20668 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    20669 make_puck_invisible 
    20670 self.segmentation_cursors[axis].display = False 
    20671 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20672 File
    20673 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20674 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    20675 super(Drawing, self).__setattr__(key, value) 
    20676 File
    20677 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20678 packages/chimerax/core/models.py", line 345, in _set_display 
    20679 Drawing.set_display(self, display) 
    20680 File
    20681 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20682 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    20683 dp = self.display_positions 
    20684 ^^^^^^^^^^^^^^^^^^^^^^ 
    20685 File
    20686 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20687 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    20688 dp = ones((len(self._positions),), bool) 
    20689 ^^^^^^^^^^^^^^^^^^^^ 
    20690 TypeError: object of type 'NoneType' has no len() 
    20691  
    20692 The above exception was the direct cause of the following exception: 
    20693  
    20694 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20695 set 
    20696  
    20697 The above exception was the direct cause of the following exception: 
    20698  
    20699 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20700 set 
    20701  
    20702 The above exception was the direct cause of the following exception: 
    20703  
    20704 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20705 set 
    20706  
    20707 The above exception was the direct cause of the following exception: 
    20708  
    20709 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20710 set 
    20711  
    20712 The above exception was the direct cause of the following exception: 
    20713  
    20714 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20715 set 
    20716  
    20717 The above exception was the direct cause of the following exception: 
    20718  
    20719 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20720 set 
    20721  
    20722 The above exception was the direct cause of the following exception: 
    20723  
    20724 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    20725 exception set 
    20726  
    20727 The above exception was the direct cause of the following exception: 
    20728  
    20729 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    20730 exception set 
    20731  
    20732 The above exception was the direct cause of the following exception: 
    20733  
    20734 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    20735 exception set 
    20736  
    20737 The above exception was the direct cause of the following exception: 
    20738  
    20739 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    20740 exception set 
    20741  
    20742 The above exception was the direct cause of the following exception: 
    20743  
    20744 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    20745 exception set 
    20746  
    20747 The above exception was the direct cause of the following exception: 
    20748  
    20749 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    20750 exception set 
    20751  
    20752 The above exception was the direct cause of the following exception: 
    20753  
    20754 Traceback (most recent call last): 
    20755 File
    20756 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20757 packages/chimerax/core/logger.py", line 334, in ehook 
    20758 self.session.ui.thread_safe( 
    20759 File
    20760 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20761 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    20762 func(*args, **kw) 
    20763 File
    20764 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20765 packages/chimerax/core/logger.py", line 516, in report_exception 
    20766 self.bug(err_msg.replace("\n", "<br>"), is_html=True) 
    20767 File
    20768 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20769 packages/chimerax/core/logger.py", line 394, in bug 
    20770 self._log( 
    20771 File
    20772 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20773 packages/chimerax/core/logger.py", line 572, in _log 
    20774 if log.log(*args): 
    20775 ^^^^^^^^^^^^^^ 
    20776 File
    20777 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20778 packages/chimerax/log/tool.py", line 342, in log 
    20779 self.session.ui.thread_safe(f) 
    20780 File
    20781 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20782 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    20783 func(*args, **kw) 
    20784 File
    20785 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20786 packages/chimerax/log/tool.py", line 341, in <lambda> 
    20787 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    20788 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20789 File
    20790 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20791 packages/chimerax/log/tool.py", line 262, in show_error_message 
    20792 ed.showMessage(msg) 
    20793 SystemError: <built-in method showMessage of BiggerErrorDialog object at
    20794 0x16be8d240> returned a result with an exception set 
    20795  
    20796 Original exception was: 
    20797 Traceback (most recent call last): 
    20798 File
    20799 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20800 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    20801 self.enterEvent() 
    20802 File
    20803 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20804 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    20805 self.segmentation_tool.make_puck_visible(self.axis) 
    20806 File
    20807 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20808 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    20809 make_puck_visible 
    20810 self.segmentation_cursors[axis].display = True 
    20811 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20812 File
    20813 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20814 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    20815 super(Drawing, self).__setattr__(key, value) 
    20816 File
    20817 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20818 packages/chimerax/core/models.py", line 345, in _set_display 
    20819 Drawing.set_display(self, display) 
    20820 File
    20821 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20822 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    20823 dp = self.display_positions 
    20824 ^^^^^^^^^^^^^^^^^^^^^^ 
    20825 File
    20826 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20827 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    20828 dp = ones((len(self._positions),), bool) 
    20829 ^^^^^^^^^^^^^^^^^^^^ 
    20830 TypeError: object of type 'NoneType' has no len() 
    20831 Traceback (most recent call last): 
    20832 File
    20833 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20834 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    20835 self.enterEvent() 
    20836 File
    20837 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20838 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    20839 self.segmentation_tool.make_puck_visible(self.axis) 
    20840 File
    20841 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20842 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    20843 make_puck_visible 
    20844 self.segmentation_cursors[axis].display = True 
    20845 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20846 File
    20847 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20848 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    20849 super(Drawing, self).__setattr__(key, value) 
    20850 File
    20851 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20852 packages/chimerax/core/models.py", line 345, in _set_display 
    20853 Drawing.set_display(self, display) 
    20854 File
    20855 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20856 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    20857 dp = self.display_positions 
    20858 ^^^^^^^^^^^^^^^^^^^^^^ 
    20859 File
    20860 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20861 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    20862 dp = ones((len(self._positions),), bool) 
    20863 ^^^^^^^^^^^^^^^^^^^^ 
    20864 TypeError: object of type 'NoneType' has no len() 
    20865  
    20866 Error in sys.excepthook: 
    20867 Traceback (most recent call last): 
    20868 File
    20869 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20870 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    20871 self.leaveEvent() 
    20872 File
    20873 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20874 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    20875 self.segmentation_tool.make_puck_invisible(self.axis) 
    20876 File
    20877 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20878 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    20879 make_puck_invisible 
    20880 self.segmentation_cursors[axis].display = False 
    20881 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20882 File
    20883 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20884 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    20885 super(Drawing, self).__setattr__(key, value) 
    20886 File
    20887 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20888 packages/chimerax/core/models.py", line 345, in _set_display 
    20889 Drawing.set_display(self, display) 
    20890 File
    20891 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20892 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    20893 dp = self.display_positions 
    20894 ^^^^^^^^^^^^^^^^^^^^^^ 
    20895 File
    20896 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20897 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    20898 dp = ones((len(self._positions),), bool) 
    20899 ^^^^^^^^^^^^^^^^^^^^ 
    20900 TypeError: object of type 'NoneType' has no len() 
    20901  
    20902 The above exception was the direct cause of the following exception: 
    20903  
    20904 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20905 set 
    20906  
    20907 The above exception was the direct cause of the following exception: 
    20908  
    20909 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20910 set 
    20911  
    20912 The above exception was the direct cause of the following exception: 
    20913  
    20914 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20915 set 
    20916  
    20917 The above exception was the direct cause of the following exception: 
    20918  
    20919 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20920 set 
    20921  
    20922 The above exception was the direct cause of the following exception: 
    20923  
    20924 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20925 set 
    20926  
    20927 The above exception was the direct cause of the following exception: 
    20928  
    20929 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    20930 set 
    20931  
    20932 The above exception was the direct cause of the following exception: 
    20933  
    20934 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    20935 exception set 
    20936  
    20937 The above exception was the direct cause of the following exception: 
    20938  
    20939 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    20940 exception set 
    20941  
    20942 The above exception was the direct cause of the following exception: 
    20943  
    20944 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    20945 exception set 
    20946  
    20947 The above exception was the direct cause of the following exception: 
    20948  
    20949 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    20950 exception set 
    20951  
    20952 The above exception was the direct cause of the following exception: 
    20953  
    20954 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    20955 exception set 
    20956  
    20957 The above exception was the direct cause of the following exception: 
    20958  
    20959 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    20960 exception set 
    20961  
    20962 The above exception was the direct cause of the following exception: 
    20963  
    20964 Traceback (most recent call last): 
    20965 File
    20966 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20967 packages/chimerax/core/logger.py", line 334, in ehook 
    20968 self.session.ui.thread_safe( 
    20969 File
    20970 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20971 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    20972 func(*args, **kw) 
    20973 File
    20974 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20975 packages/chimerax/core/logger.py", line 516, in report_exception 
    20976 self.bug(err_msg.replace("\n", "<br>"), is_html=True) 
    20977 File
    20978 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20979 packages/chimerax/core/logger.py", line 394, in bug 
    20980 self._log( 
    20981 File
    20982 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20983 packages/chimerax/core/logger.py", line 572, in _log 
    20984 if log.log(*args): 
    20985 ^^^^^^^^^^^^^^ 
    20986 File
    20987 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20988 packages/chimerax/log/tool.py", line 342, in log 
    20989 self.session.ui.thread_safe(f) 
    20990 File
    20991 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20992 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    20993 func(*args, **kw) 
    20994 File
    20995 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20996 packages/chimerax/log/tool.py", line 341, in <lambda> 
    20997 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    20998 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20999 File
    21000 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21001 packages/chimerax/log/tool.py", line 262, in show_error_message 
    21002 ed.showMessage(msg) 
    21003 SystemError: <built-in method showMessage of BiggerErrorDialog object at
    21004 0x16be8d240> returned a result with an exception set 
    21005  
    21006 Original exception was: 
    21007 Traceback (most recent call last): 
    21008 File
    21009 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21010 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    21011 self.enterEvent() 
    21012 File
    21013 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21014 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    21015 self.segmentation_tool.make_puck_visible(self.axis) 
    21016 File
    21017 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21018 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    21019 make_puck_visible 
    21020 self.segmentation_cursors[axis].display = True 
    21021 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21022 File
    21023 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21024 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    21025 super(Drawing, self).__setattr__(key, value) 
    21026 File
    21027 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21028 packages/chimerax/core/models.py", line 345, in _set_display 
    21029 Drawing.set_display(self, display) 
    21030 File
    21031 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21032 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    21033 dp = self.display_positions 
    21034 ^^^^^^^^^^^^^^^^^^^^^^ 
    21035 File
    21036 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21037 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    21038 dp = ones((len(self._positions),), bool) 
    21039 ^^^^^^^^^^^^^^^^^^^^ 
    21040 TypeError: object of type 'NoneType' has no len() 
    21041 Traceback (most recent call last): 
    21042 File
    21043 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21044 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    21045 self.enterEvent() 
    21046 File
    21047 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21048 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    21049 self.segmentation_tool.make_puck_visible(self.axis) 
    21050 File
    21051 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21052 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    21053 make_puck_visible 
    21054 self.segmentation_cursors[axis].display = True 
    21055 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21056 File
    21057 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21058 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    21059 super(Drawing, self).__setattr__(key, value) 
    21060 File
    21061 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21062 packages/chimerax/core/models.py", line 345, in _set_display 
    21063 Drawing.set_display(self, display) 
    21064 File
    21065 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21066 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    21067 dp = self.display_positions 
    21068 ^^^^^^^^^^^^^^^^^^^^^^ 
    21069 File
    21070 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21071 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    21072 dp = ones((len(self._positions),), bool) 
    21073 ^^^^^^^^^^^^^^^^^^^^ 
    21074 TypeError: object of type 'NoneType' has no len() 
    21075  
    21076 Error in sys.excepthook: 
    21077 Traceback (most recent call last): 
    21078 File
    21079 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21080 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    21081 self.leaveEvent() 
    21082 File
    21083 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21084 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    21085 self.segmentation_tool.make_puck_invisible(self.axis) 
    21086 File
    21087 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21088 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    21089 make_puck_invisible 
    21090 self.segmentation_cursors[axis].display = False 
    21091 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21092 File
    21093 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21094 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    21095 super(Drawing, self).__setattr__(key, value) 
    21096 File
    21097 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21098 packages/chimerax/core/models.py", line 345, in _set_display 
    21099 Drawing.set_display(self, display) 
    21100 File
    21101 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21102 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    21103 dp = self.display_positions 
    21104 ^^^^^^^^^^^^^^^^^^^^^^ 
    21105 File
    21106 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21107 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    21108 dp = ones((len(self._positions),), bool) 
    21109 ^^^^^^^^^^^^^^^^^^^^ 
    21110 TypeError: object of type 'NoneType' has no len() 
    21111  
    21112 The above exception was the direct cause of the following exception: 
    21113  
    21114 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    21115 set 
    21116  
    21117 The above exception was the direct cause of the following exception: 
    21118  
    21119 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    21120 set 
    21121  
    21122 The above exception was the direct cause of the following exception: 
    21123  
    21124 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    21125 set 
    21126  
    21127 The above exception was the direct cause of the following exception: 
    21128  
    21129 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    21130 set 
    21131  
    21132 The above exception was the direct cause of the following exception: 
    21133  
    21134 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    21135 set 
    21136  
    21137 The above exception was the direct cause of the following exception: 
    21138  
    21139 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    21140 set 
    21141  
    21142 The above exception was the direct cause of the following exception: 
    21143  
    21144 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    21145 exception set 
    21146  
    21147 The above exception was the direct cause of the following exception: 
    21148  
    21149 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    21150 exception set 
    21151  
    21152 The above exception was the direct cause of the following exception: 
    21153  
    21154 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    21155 exception set 
    21156  
    21157 The above exception was the direct cause of the following exception: 
    21158  
    21159 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    21160 exception set 
    21161  
    21162 The above exception was the direct cause of the following exception: 
    21163  
    21164 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    21165 exception set 
    21166  
    21167 The above exception was the direct cause of the following exception: 
    21168  
    21169 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    21170 exception set 
    21171  
    21172 The above exception was the direct cause of the following exception: 
    21173  
    21174 Traceback (most recent call last): 
    21175 File
    21176 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21177 packages/chimerax/core/logger.py", line 334, in ehook 
    21178 self.session.ui.thread_safe( 
    21179 File
    21180 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21181 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    21182 func(*args, **kw) 
    21183 File
    21184 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21185 packages/chimerax/core/logger.py", line 516, in report_exception 
    21186 self.bug(err_msg.replace("\n", "<br>"), is_html=True) 
    21187 File
    21188 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21189 packages/chimerax/core/logger.py", line 394, in bug 
    21190 self._log( 
    21191 File
    21192 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21193 packages/chimerax/core/logger.py", line 572, in _log 
    21194 if log.log(*args): 
    21195 ^^^^^^^^^^^^^^ 
    21196 File
    21197 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21198 packages/chimerax/log/tool.py", line 342, in log 
    21199 self.session.ui.thread_safe(f) 
    21200 File
    21201 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21202 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    21203 func(*args, **kw) 
    21204 File
    21205 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21206 packages/chimerax/log/tool.py", line 341, in <lambda> 
    21207 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    21208 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21209 File
    21210 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21211 packages/chimerax/log/tool.py", line 262, in show_error_message 
    21212 ed.showMessage(msg) 
    21213 SystemError: <built-in method showMessage of BiggerErrorDialog object at
    21214 0x16be8d240> returned a result with an exception set 
    21215  
    21216 Original exception was: 
    21217 Traceback (most recent call last): 
    21218 File
    21219 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21220 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    21221 self.enterEvent() 
    21222 File
    21223 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21224 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    21225 self.segmentation_tool.make_puck_visible(self.axis) 
    21226 File
    21227 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21228 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    21229 make_puck_visible 
    21230 self.segmentation_cursors[axis].display = True 
    21231 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21232 File
    21233 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21234 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    21235 super(Drawing, self).__setattr__(key, value) 
    21236 File
    21237 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21238 packages/chimerax/core/models.py", line 345, in _set_display 
    21239 Drawing.set_display(self, display) 
    21240 File
    21241 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21242 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    21243 dp = self.display_positions 
    21244 ^^^^^^^^^^^^^^^^^^^^^^ 
    21245 File
    21246 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21247 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    21248 dp = ones((len(self._positions),), bool) 
    21249 ^^^^^^^^^^^^^^^^^^^^ 
    21250 TypeError: object of type 'NoneType' has no len() 
    21251 Traceback (most recent call last): 
    21252 File
    21253 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21254 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    21255 self.enterEvent() 
    21256 File
    21257 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21258 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    21259 self.segmentation_tool.make_puck_visible(self.axis) 
    21260 File
    21261 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21262 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    21263 make_puck_visible 
    21264 self.segmentation_cursors[axis].display = True 
    21265 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21266 File
    21267 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21268 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    21269 super(Drawing, self).__setattr__(key, value) 
    21270 File
    21271 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21272 packages/chimerax/core/models.py", line 345, in _set_display 
    21273 Drawing.set_display(self, display) 
    21274 File
    21275 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21276 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    21277 dp = self.display_positions 
    21278 ^^^^^^^^^^^^^^^^^^^^^^ 
    21279 File
    21280 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21281 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    21282 dp = ones((len(self._positions),), bool) 
    21283 ^^^^^^^^^^^^^^^^^^^^ 
    21284 TypeError: object of type 'NoneType' has no len() 
    21285  
    21286 Error in sys.excepthook: 
    21287 Traceback (most recent call last): 
    21288 File
    21289 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21290 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    21291 self.leaveEvent() 
    21292 File
    21293 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21294 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    21295 self.segmentation_tool.make_puck_invisible(self.axis) 
    21296 File
    21297 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21298 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    21299 make_puck_invisible 
    21300 self.segmentation_cursors[axis].display = False 
    21301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21302 File
    21303 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21304 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    21305 super(Drawing, self).__setattr__(key, value) 
    21306 File
    21307 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21308 packages/chimerax/core/models.py", line 345, in _set_display 
    21309 Drawing.set_display(self, display) 
    21310 File
    21311 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21312 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    21313 dp = self.display_positions 
    21314 ^^^^^^^^^^^^^^^^^^^^^^ 
    21315 File
    21316 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21317 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    21318 dp = ones((len(self._positions),), bool) 
    21319 ^^^^^^^^^^^^^^^^^^^^ 
    21320 TypeError: object of type 'NoneType' has no len() 
    21321  
    21322 The above exception was the direct cause of the following exception: 
    21323  
    21324 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    21325 set 
    21326  
    21327 The above exception was the direct cause of the following exception: 
    21328  
    21329 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    21330 set 
    21331  
    21332 The above exception was the direct cause of the following exception: 
    21333  
    21334 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    21335 set 
    21336  
    21337 The above exception was the direct cause of the following exception: 
    21338  
    21339 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    21340 set 
    21341  
    21342 The above exception was the direct cause of the following exception: 
    21343  
    21344 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    21345 set 
    21346  
    21347 The above exception was the direct cause of the following exception: 
    21348  
    21349 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    21350 set 
    21351  
    21352 The above exception was the direct cause of the following exception: 
    21353  
    21354 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    21355 exception set 
    21356  
    21357 The above exception was the direct cause of the following exception: 
    21358  
    21359 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    21360 exception set 
    21361  
    21362 The above exception was the direct cause of the following exception: 
    21363  
    21364 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    21365 exception set 
    21366  
    21367 The above exception was the direct cause of the following exception: 
    21368  
    21369 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    21370 exception set 
    21371  
    21372 The above exception was the direct cause of the following exception: 
    21373  
    21374 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    21375 exception set 
    21376  
    21377 The above exception was the direct cause of the following exception: 
    21378  
    21379 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    21380 exception set 
    21381  
    21382 The above exception was the direct cause of the following exception: 
    21383  
    21384 Traceback (most recent call last): 
    21385 File
    21386 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21387 packages/chimerax/core/logger.py", line 334, in ehook 
    21388 self.session.ui.thread_safe( 
    21389 File
    21390 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21391 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    21392 func(*args, **kw) 
    21393 File
    21394 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21395 packages/chimerax/core/logger.py", line 516, in report_exception 
    21396 self.bug(err_msg.replace("\n", "<br>"), is_html=True) 
    21397 File
    21398 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21399 packages/chimerax/core/logger.py", line 394, in bug 
    21400 self._log( 
    21401 File
    21402 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21403 packages/chimerax/core/logger.py", line 572, in _log 
    21404 if log.log(*args): 
    21405 ^^^^^^^^^^^^^^ 
    21406 File
    21407 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21408 packages/chimerax/log/tool.py", line 342, in log 
    21409 self.session.ui.thread_safe(f) 
    21410 File
    21411 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21412 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    21413 func(*args, **kw) 
    21414 File
    21415 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21416 packages/chimerax/log/tool.py", line 341, in <lambda> 
    21417 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    21418 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21419 File
    21420 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21421 packages/chimerax/log/tool.py", line 262, in show_error_message 
    21422 ed.showMessage(msg) 
    21423 SystemError: <built-in method showMessage of BiggerErrorDialog object at
    21424 0x16be8d240> returned a result with an exception set 
    21425  
    21426 Original exception was: 
    21427 Traceback (most recent call last): 
    21428 File
    21429 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21430 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    21431 self.enterEvent() 
    21432 File
    21433 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21434 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    21435 self.segmentation_tool.make_puck_visible(self.axis) 
    21436 File
    21437 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21438 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    21439 make_puck_visible 
    21440 self.segmentation_cursors[axis].display = True 
    21441 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21442 File
    21443 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21444 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    21445 super(Drawing, self).__setattr__(key, value) 
    21446 File
    21447 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21448 packages/chimerax/core/models.py", line 345, in _set_display 
    21449 Drawing.set_display(self, display) 
    21450 File
    21451 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21452 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    21453 dp = self.display_positions 
    21454 ^^^^^^^^^^^^^^^^^^^^^^ 
    21455 File
    21456 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21457 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    21458 dp = ones((len(self._positions),), bool) 
    21459 ^^^^^^^^^^^^^^^^^^^^ 
    21460 TypeError: object of type 'NoneType' has no len() 
    21461 Traceback (most recent call last): 
    21462 File
    21463 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21464 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    21465 self.enterEvent() 
    21466 File
    21467 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21468 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    21469 self.segmentation_tool.make_puck_visible(self.axis) 
    21470 File
    21471 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21472 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    21473 make_puck_visible 
    21474 self.segmentation_cursors[axis].display = True 
    21475 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21476 File
    21477 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21478 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    21479 super(Drawing, self).__setattr__(key, value) 
    21480 File
    21481 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21482 packages/chimerax/core/models.py", line 345, in _set_display 
    21483 Drawing.set_display(self, display) 
    21484 File
    21485 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21486 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    21487 dp = self.display_positions 
    21488 ^^^^^^^^^^^^^^^^^^^^^^ 
    21489 File
    21490 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21491 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    21492 dp = ones((len(self._positions),), bool) 
    21493 ^^^^^^^^^^^^^^^^^^^^ 
    21494 TypeError: object of type 'NoneType' has no len() 
    21495  
    21496 TypeError: object of type 'NoneType' has no len() 
    21497  
    21498 File
    21499 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21500 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    21501 dp = ones((len(self._positions),), bool) 
    21502 ^^^^^^^^^^^^^^^^^^^^ 
    21503  
    21504 See log for complete Python traceback. 
    21505  
    21506 Traceback (most recent call last): 
    21507 File
    21508 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21509 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21510 mouseMoveEvent 
    21511 self.moveSegmentationPuck(x, y, record_seg=False) 
    21512 File
    21513 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21514 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21515 moveSegmentationPuck 
    21516 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21517 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21518 File
    21519 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21520 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21521 return self.position.origin() 
    21522 ^^^^^^^^^^^^^ 
    21523 File
    21524 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21525 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21526 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21527 self.name) 
    21528 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21529 segmentation cursor" 
    21530  
    21531 Error in sys.excepthook: 
    21532 Traceback (most recent call last): 
    21533 File
    21534 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21535 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    21536 self.leaveEvent() 
    21537 File
    21538 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21539 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    21540 self.segmentation_tool.make_puck_invisible(self.axis) 
    21541 File
    21542 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21543 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    21544 make_puck_invisible 
    21545 self.segmentation_cursors[axis].display = False 
    21546 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21547 File
    21548 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21549 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    21550 super(Drawing, self).__setattr__(key, value) 
    21551 File
    21552 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21553 packages/chimerax/core/models.py", line 345, in _set_display 
    21554 Drawing.set_display(self, display) 
    21555 File
    21556 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21557 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    21558 dp = self.display_positions 
    21559 ^^^^^^^^^^^^^^^^^^^^^^ 
    21560 File
    21561 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21562 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    21563 dp = ones((len(self._positions),), bool) 
    21564 ^^^^^^^^^^^^^^^^^^^^ 
    21565 TypeError: object of type 'NoneType' has no len() 
    21566  
    21567 The above exception was the direct cause of the following exception: 
    21568  
    21569 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    21570 set 
    21571  
    21572 The above exception was the direct cause of the following exception: 
    21573  
    21574 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    21575 set 
    21576  
    21577 The above exception was the direct cause of the following exception: 
    21578  
    21579 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    21580 set 
    21581  
    21582 The above exception was the direct cause of the following exception: 
    21583  
    21584 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    21585 set 
    21586  
    21587 The above exception was the direct cause of the following exception: 
    21588  
    21589 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    21590 set 
    21591  
    21592 The above exception was the direct cause of the following exception: 
    21593  
    21594 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    21595 set 
    21596  
    21597 The above exception was the direct cause of the following exception: 
    21598  
    21599 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    21600 exception set 
    21601  
    21602 The above exception was the direct cause of the following exception: 
    21603  
    21604 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    21605 exception set 
    21606  
    21607 The above exception was the direct cause of the following exception: 
    21608  
    21609 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    21610 exception set 
    21611  
    21612 The above exception was the direct cause of the following exception: 
    21613  
    21614 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    21615 exception set 
    21616  
    21617 The above exception was the direct cause of the following exception: 
    21618  
    21619 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    21620 exception set 
    21621  
    21622 The above exception was the direct cause of the following exception: 
    21623  
    21624 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    21625 exception set 
    21626  
    21627 The above exception was the direct cause of the following exception: 
    21628  
    21629 Traceback (most recent call last): 
    21630 File
    21631 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21632 packages/chimerax/core/logger.py", line 334, in ehook 
    21633 self.session.ui.thread_safe( 
    21634 File
    21635 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21636 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    21637 func(*args, **kw) 
    21638 File
    21639 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21640 packages/chimerax/core/logger.py", line 516, in report_exception 
    21641 self.bug(err_msg.replace("\n", "<br>"), is_html=True) 
    21642 File
    21643 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21644 packages/chimerax/core/logger.py", line 394, in bug 
    21645 self._log( 
    21646 File
    21647 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21648 packages/chimerax/core/logger.py", line 572, in _log 
    21649 if log.log(*args): 
    21650 ^^^^^^^^^^^^^^ 
    21651 File
    21652 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21653 packages/chimerax/log/tool.py", line 342, in log 
    21654 self.session.ui.thread_safe(f) 
    21655 File
    21656 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21657 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    21658 func(*args, **kw) 
    21659 File
    21660 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21661 packages/chimerax/log/tool.py", line 341, in <lambda> 
    21662 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    21663 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21664 File
    21665 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21666 packages/chimerax/log/tool.py", line 262, in show_error_message 
    21667 ed.showMessage(msg) 
    21668 SystemError: <built-in method showMessage of BiggerErrorDialog object at
    21669 0x16be8d240> returned a result with an exception set 
    21670  
    21671 Original exception was: 
    21672 Traceback (most recent call last): 
    21673 File
    21674 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21675 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21676 mouseMoveEvent 
    21677 self.moveSegmentationPuck(x, y, record_seg=False) 
    21678 File
    21679 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21680 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21681 moveSegmentationPuck 
    21682 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21683 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21684 File
    21685 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21686 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21687 return self.position.origin() 
    21688 ^^^^^^^^^^^^^ 
    21689 File
    21690 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21691 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21692 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21693 self.name) 
    21694 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21695 segmentation cursor" 
    21696 Traceback (most recent call last): 
    21697 File
    21698 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21699 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    21700 self.enterEvent() 
    21701 File
    21702 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21703 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    21704 self.segmentation_tool.make_puck_visible(self.axis) 
    21705 File
    21706 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21707 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    21708 make_puck_visible 
    21709 self.segmentation_cursors[axis].display = True 
    21710 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21711 File
    21712 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21713 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    21714 super(Drawing, self).__setattr__(key, value) 
    21715 File
    21716 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21717 packages/chimerax/core/models.py", line 345, in _set_display 
    21718 Drawing.set_display(self, display) 
    21719 File
    21720 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21721 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    21722 dp = self.display_positions 
    21723 ^^^^^^^^^^^^^^^^^^^^^^ 
    21724 File
    21725 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21726 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    21727 dp = ones((len(self._positions),), bool) 
    21728 ^^^^^^^^^^^^^^^^^^^^ 
    21729 TypeError: object of type 'NoneType' has no len() 
    21730  
    21731 TypeError: object of type 'NoneType' has no len() 
    21732  
    21733 File
    21734 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21735 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    21736 dp = ones((len(self._positions),), bool) 
    21737 ^^^^^^^^^^^^^^^^^^^^ 
    21738  
    21739 See log for complete Python traceback. 
    21740  
    21741 Traceback (most recent call last): 
    21742 File
    21743 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21744 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21745 mouseMoveEvent 
    21746 self.moveSegmentationPuck(x, y, record_seg=False) 
    21747 File
    21748 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21749 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21750 moveSegmentationPuck 
    21751 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21752 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21753 File
    21754 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21755 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21756 return self.position.origin() 
    21757 ^^^^^^^^^^^^^ 
    21758 File
    21759 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21760 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21761 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21762 self.name) 
    21763 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21764 segmentation cursor" 
    21765  
    21766 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21767 segmentation cursor" 
    21768  
    21769 File
    21770 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21771 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21772 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21773 self.name) 
    21774  
    21775 See log for complete Python traceback. 
    21776  
    21777 Traceback (most recent call last): 
    21778 File
    21779 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21780 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21781 mouseMoveEvent 
    21782 self.moveSegmentationPuck(x, y, record_seg=False) 
    21783 File
    21784 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21785 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21786 moveSegmentationPuck 
    21787 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21788 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21789 File
    21790 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21791 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21792 return self.position.origin() 
    21793 ^^^^^^^^^^^^^ 
    21794 File
    21795 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21796 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21797 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21798 self.name) 
    21799 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21800 segmentation cursor" 
    21801  
    21802 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21803 segmentation cursor" 
    21804  
    21805 File
    21806 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21807 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21808 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21809 self.name) 
    21810  
    21811 See log for complete Python traceback. 
    21812  
    21813 Traceback (most recent call last): 
    21814 File
    21815 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21816 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21817 mouseMoveEvent 
    21818 self.moveSegmentationPuck(x, y, record_seg=False) 
    21819 File
    21820 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21821 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21822 moveSegmentationPuck 
    21823 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21824 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21825 File
    21826 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21827 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21828 return self.position.origin() 
    21829 ^^^^^^^^^^^^^ 
    21830 File
    21831 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21832 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21833 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21834 self.name) 
    21835 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21836 segmentation cursor" 
    21837  
    21838 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21839 segmentation cursor" 
    21840  
    21841 File
    21842 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21843 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21844 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21845 self.name) 
    21846  
    21847 See log for complete Python traceback. 
    21848  
    21849 Traceback (most recent call last): 
    21850 File
    21851 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21852 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21853 mouseMoveEvent 
    21854 self.moveSegmentationPuck(x, y, record_seg=False) 
    21855 File
    21856 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21857 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21858 moveSegmentationPuck 
    21859 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21860 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21861 File
    21862 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21863 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21864 return self.position.origin() 
    21865 ^^^^^^^^^^^^^ 
    21866 File
    21867 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21868 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21869 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21870 self.name) 
    21871 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21872 segmentation cursor" 
    21873  
    21874 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21875 segmentation cursor" 
    21876  
    21877 File
    21878 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21879 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21880 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21881 self.name) 
    21882  
    21883 See log for complete Python traceback. 
    21884  
    21885 Traceback (most recent call last): 
    21886 File
    21887 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21888 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21889 mouseMoveEvent 
    21890 self.moveSegmentationPuck(x, y, record_seg=False) 
    21891 File
    21892 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21893 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21894 moveSegmentationPuck 
    21895 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21896 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21897 File
    21898 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21899 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21900 return self.position.origin() 
    21901 ^^^^^^^^^^^^^ 
    21902 File
    21903 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21904 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21905 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21906 self.name) 
    21907 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21908 segmentation cursor" 
    21909  
    21910 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21911 segmentation cursor" 
    21912  
    21913 File
    21914 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21915 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21916 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21917 self.name) 
    21918  
    21919 See log for complete Python traceback. 
    21920  
    21921 Traceback (most recent call last): 
    21922 File
    21923 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21924 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21925 mouseMoveEvent 
    21926 self.moveSegmentationPuck(x, y, record_seg=False) 
    21927 File
    21928 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21929 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21930 moveSegmentationPuck 
    21931 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21932 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21933 File
    21934 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21935 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21936 return self.position.origin() 
    21937 ^^^^^^^^^^^^^ 
    21938 File
    21939 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21940 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21941 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21942 self.name) 
    21943 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21944 segmentation cursor" 
    21945  
    21946 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21947 segmentation cursor" 
    21948  
    21949 File
    21950 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21951 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21952 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21953 self.name) 
    21954  
    21955 See log for complete Python traceback. 
    21956  
    21957 Traceback (most recent call last): 
    21958 File
    21959 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21960 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21961 mouseMoveEvent 
    21962 self.moveSegmentationPuck(x, y, record_seg=False) 
    21963 File
    21964 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21965 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21966 moveSegmentationPuck 
    21967 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21968 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21969 File
    21970 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21971 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21972 return self.position.origin() 
    21973 ^^^^^^^^^^^^^ 
    21974 File
    21975 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21976 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21977 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21978 self.name) 
    21979 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21980 segmentation cursor" 
    21981  
    21982 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21983 segmentation cursor" 
    21984  
    21985 File
    21986 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21987 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21988 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21989 self.name) 
    21990  
    21991 See log for complete Python traceback. 
    21992  
    21993 Traceback (most recent call last): 
    21994 File
    21995 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21996 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21997 mouseMoveEvent 
    21998 self.moveSegmentationPuck(x, y, record_seg=False) 
    21999 File
    22000 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22001 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22002 moveSegmentationPuck 
    22003 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22004 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22005 File
    22006 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22007 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22008 return self.position.origin() 
    22009 ^^^^^^^^^^^^^ 
    22010 File
    22011 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22012 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22013 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22014 self.name) 
    22015 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22016 segmentation cursor" 
    22017  
    22018 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22019 segmentation cursor" 
    22020  
    22021 File
    22022 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22023 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22024 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22025 self.name) 
    22026  
    22027 See log for complete Python traceback. 
    22028  
    22029 Traceback (most recent call last): 
    22030 File
    22031 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22032 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    22033 self.leaveEvent() 
    22034 File
    22035 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22036 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    22037 self.segmentation_tool.make_puck_invisible(self.axis) 
    22038 File
    22039 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22040 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    22041 make_puck_invisible 
    22042 self.segmentation_cursors[axis].display = False 
    22043 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22044 File
    22045 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22046 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    22047 super(Drawing, self).__setattr__(key, value) 
    22048 File
    22049 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22050 packages/chimerax/core/models.py", line 345, in _set_display 
    22051 Drawing.set_display(self, display) 
    22052 File
    22053 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22054 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    22055 dp = self.display_positions 
    22056 ^^^^^^^^^^^^^^^^^^^^^^ 
    22057 File
    22058 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22059 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    22060 dp = ones((len(self._positions),), bool) 
    22061 ^^^^^^^^^^^^^^^^^^^^ 
    22062 TypeError: object of type 'NoneType' has no len() 
    22063  
    22064 TypeError: object of type 'NoneType' has no len() 
    22065  
    22066 File
    22067 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22068 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    22069 dp = ones((len(self._positions),), bool) 
    22070 ^^^^^^^^^^^^^^^^^^^^ 
    22071  
    22072 See log for complete Python traceback. 
    22073  
    22074 
    22075 > close #
    22076 
    22077 Expected a models specifier or a keyword 
    22078 
    22079 > close #
    22080 
    22081 Expected a models specifier or a keyword 
    22082 close # 
    22083 ......^ 
    22084 Expected a models specifier or a keyword 
    22085 Traceback (most recent call last): 
    22086 File
    22087 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22088 packages/chimerax/core/commands/logging.py", line 40, in
    22089 log_equivalent_command 
    22090 command.run(command_text, log_only=True) 
    22091 File
    22092 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22093 packages/chimerax/core/commands/cli.py", line 3175, in run 
    22094 raise UserError(self._error) 
    22095 chimerax.core.errors.UserError: Expected a models specifier or a keyword 
    22096  
    22097 During handling of the above exception, another exception occurred: 
    22098  
    22099 Traceback (most recent call last): 
    22100 File
    22101 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22102 packages/chimerax/map/volume_viewer.py", line 2138, in close_map_cb 
    22103 log_equivalent_command(v.session, 'close #%s' % v.id_string) 
    22104 File
    22105 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22106 packages/chimerax/core/commands/logging.py", line 42, in
    22107 log_equivalent_command 
    22108 session.logger.info(str(err)) 
    22109 ^^^^^^^^^^^^^^ 
    22110 AttributeError: 'NoneType' object has no attribute 'logger' 
    22111  
    22112 AttributeError: 'NoneType' object has no attribute 'logger' 
    22113  
    22114 File
    22115 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22116 packages/chimerax/core/commands/logging.py", line 42, in
    22117 log_equivalent_command 
    22118 session.logger.info(str(err)) 
    22119 ^^^^^^^^^^^^^^ 
    22120  
    22121 See log for complete Python traceback. 
    22122  
    22123 Traceback (most recent call last): 
    22124 File
    22125 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22126 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    22127 self.enterEvent() 
    22128 File
    22129 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22130 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    22131 self.segmentation_tool.make_puck_visible(self.axis) 
    22132 File
    22133 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22134 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    22135 make_puck_visible 
    22136 self.segmentation_cursors[axis].display = True 
    22137 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22138 File
    22139 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22140 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    22141 super(Drawing, self).__setattr__(key, value) 
    22142 File
    22143 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22144 packages/chimerax/core/models.py", line 345, in _set_display 
    22145 Drawing.set_display(self, display) 
    22146 File
    22147 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22148 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    22149 dp = self.display_positions 
    22150 ^^^^^^^^^^^^^^^^^^^^^^ 
    22151 File
    22152 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22153 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    22154 dp = ones((len(self._positions),), bool) 
    22155 ^^^^^^^^^^^^^^^^^^^^ 
    22156 TypeError: object of type 'NoneType' has no len() 
    22157  
    22158 TypeError: object of type 'NoneType' has no len() 
    22159  
    22160 File
    22161 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22162 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    22163 dp = ones((len(self._positions),), bool) 
    22164 ^^^^^^^^^^^^^^^^^^^^ 
    22165  
    22166 See log for complete Python traceback. 
    22167  
    22168 Traceback (most recent call last): 
    22169 File
    22170 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22171 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22172 mouseMoveEvent 
    22173 self.moveSegmentationPuck(x, y, record_seg=False) 
    22174 File
    22175 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22176 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22177 moveSegmentationPuck 
    22178 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22179 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22180 File
    22181 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22182 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22183 return self.position.origin() 
    22184 ^^^^^^^^^^^^^ 
    22185 File
    22186 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22187 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22188 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22189 self.name) 
    22190 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22191 segmentation cursor" 
    22192  
    22193 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22194 segmentation cursor" 
    22195  
    22196 File
    22197 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22198 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22199 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22200 self.name) 
    22201  
    22202 See log for complete Python traceback. 
    22203  
    22204 Traceback (most recent call last): 
    22205 File
    22206 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22207 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22208 mouseMoveEvent 
    22209 self.moveSegmentationPuck(x, y, record_seg=False) 
    22210 File
    22211 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22212 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22213 moveSegmentationPuck 
    22214 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22215 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22216 File
    22217 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22218 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22219 return self.position.origin() 
    22220 ^^^^^^^^^^^^^ 
    22221 File
    22222 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22223 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22224 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22225 self.name) 
    22226 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22227 segmentation cursor" 
    22228  
    22229 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22230 segmentation cursor" 
    22231  
    22232 File
    22233 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22234 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22235 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22236 self.name) 
    22237  
    22238 See log for complete Python traceback. 
    22239  
    22240 Traceback (most recent call last): 
    22241 File
    22242 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22243 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22244 mouseMoveEvent 
    22245 self.moveSegmentationPuck(x, y, record_seg=False) 
    22246 File
    22247 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22248 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22249 moveSegmentationPuck 
    22250 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22251 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22252 File
    22253 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22254 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22255 return self.position.origin() 
    22256 ^^^^^^^^^^^^^ 
    22257 File
    22258 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22259 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22260 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22261 self.name) 
    22262 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22263 segmentation cursor" 
    22264  
    22265 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22266 segmentation cursor" 
    22267  
    22268 File
    22269 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22270 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22271 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22272 self.name) 
    22273  
    22274 See log for complete Python traceback. 
    22275  
    22276 Traceback (most recent call last): 
    22277 File
    22278 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22279 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22280 mouseMoveEvent 
    22281 self.moveSegmentationPuck(x, y, record_seg=False) 
    22282 File
    22283 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22284 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22285 moveSegmentationPuck 
    22286 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22287 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22288 File
    22289 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22290 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22291 return self.position.origin() 
    22292 ^^^^^^^^^^^^^ 
    22293 File
    22294 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22295 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22296 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22297 self.name) 
    22298 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22299 segmentation cursor" 
    22300  
    22301 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22302 segmentation cursor" 
    22303  
    22304 File
    22305 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22306 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22307 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22308 self.name) 
    22309  
    22310 See log for complete Python traceback. 
    22311  
    22312 Traceback (most recent call last): 
    22313 File
    22314 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22315 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22316 mouseMoveEvent 
    22317 self.moveSegmentationPuck(x, y, record_seg=False) 
    22318 File
    22319 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22320 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22321 moveSegmentationPuck 
    22322 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22323 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22324 File
    22325 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22326 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22327 return self.position.origin() 
    22328 ^^^^^^^^^^^^^ 
    22329 File
    22330 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22331 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22332 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22333 self.name) 
    22334 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22335 segmentation cursor" 
    22336  
    22337 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22338 segmentation cursor" 
    22339  
    22340 File
    22341 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22342 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22343 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22344 self.name) 
    22345  
    22346 See log for complete Python traceback. 
    22347  
    22348 Traceback (most recent call last): 
    22349 File
    22350 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22351 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    22352 self.leaveEvent() 
    22353 File
    22354 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22355 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    22356 self.segmentation_tool.make_puck_invisible(self.axis) 
    22357 File
    22358 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22359 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    22360 make_puck_invisible 
    22361 self.segmentation_cursors[axis].display = False 
    22362 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22363 File
    22364 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22365 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    22366 super(Drawing, self).__setattr__(key, value) 
    22367 File
    22368 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22369 packages/chimerax/core/models.py", line 345, in _set_display 
    22370 Drawing.set_display(self, display) 
    22371 File
    22372 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22373 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    22374 dp = self.display_positions 
    22375 ^^^^^^^^^^^^^^^^^^^^^^ 
    22376 File
    22377 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22378 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    22379 dp = ones((len(self._positions),), bool) 
    22380 ^^^^^^^^^^^^^^^^^^^^ 
    22381 TypeError: object of type 'NoneType' has no len() 
    22382  
    22383 TypeError: object of type 'NoneType' has no len() 
    22384  
    22385 File
    22386 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22387 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    22388 dp = ones((len(self._positions),), bool) 
    22389 ^^^^^^^^^^^^^^^^^^^^ 
    22390  
    22391 See log for complete Python traceback. 
    22392  
    22393 Traceback (most recent call last): 
    22394 File
    22395 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22396 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    22397 self.enterEvent() 
    22398 File
    22399 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22400 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    22401 self.segmentation_tool.make_puck_visible(self.axis) 
    22402 File
    22403 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22404 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    22405 make_puck_visible 
    22406 self.segmentation_cursors[axis].display = True 
    22407 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22408 File
    22409 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22410 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    22411 super(Drawing, self).__setattr__(key, value) 
    22412 File
    22413 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22414 packages/chimerax/core/models.py", line 345, in _set_display 
    22415 Drawing.set_display(self, display) 
    22416 File
    22417 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22418 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    22419 dp = self.display_positions 
    22420 ^^^^^^^^^^^^^^^^^^^^^^ 
    22421 File
    22422 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22423 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    22424 dp = ones((len(self._positions),), bool) 
    22425 ^^^^^^^^^^^^^^^^^^^^ 
    22426 TypeError: object of type 'NoneType' has no len() 
    22427  
    22428 TypeError: object of type 'NoneType' has no len() 
    22429  
    22430 File
    22431 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22432 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    22433 dp = ones((len(self._positions),), bool) 
    22434 ^^^^^^^^^^^^^^^^^^^^ 
    22435  
    22436 See log for complete Python traceback. 
    22437  
    22438 Traceback (most recent call last): 
    22439 File
    22440 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22441 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22442 mouseMoveEvent 
    22443 self.moveSegmentationPuck(x, y, record_seg=False) 
    22444 File
    22445 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22446 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22447 moveSegmentationPuck 
    22448 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22449 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22450 File
    22451 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22452 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22453 return self.position.origin() 
    22454 ^^^^^^^^^^^^^ 
    22455 File
    22456 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22457 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22458 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22459 self.name) 
    22460 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    22461 cursor" 
    22462  
    22463 Error in sys.excepthook: 
    22464 Traceback (most recent call last): 
    22465 File
    22466 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22467 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    22468 self.leaveEvent() 
    22469 File
    22470 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22471 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    22472 self.segmentation_tool.make_puck_invisible(self.axis) 
    22473 File
    22474 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22475 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    22476 make_puck_invisible 
    22477 self.segmentation_cursors[axis].display = False 
    22478 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22479 File
    22480 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22481 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    22482 super(Drawing, self).__setattr__(key, value) 
    22483 File
    22484 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22485 packages/chimerax/core/models.py", line 345, in _set_display 
    22486 Drawing.set_display(self, display) 
    22487 File
    22488 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22489 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    22490 dp = self.display_positions 
    22491 ^^^^^^^^^^^^^^^^^^^^^^ 
    22492 File
    22493 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22494 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    22495 dp = ones((len(self._positions),), bool) 
    22496 ^^^^^^^^^^^^^^^^^^^^ 
    22497 TypeError: object of type 'NoneType' has no len() 
    22498  
    22499 The above exception was the direct cause of the following exception: 
    22500  
    22501 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    22502 set 
    22503  
    22504 The above exception was the direct cause of the following exception: 
    22505  
    22506 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    22507 set 
    22508  
    22509 The above exception was the direct cause of the following exception: 
    22510  
    22511 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    22512 set 
    22513  
    22514 The above exception was the direct cause of the following exception: 
    22515  
    22516 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    22517 set 
    22518  
    22519 The above exception was the direct cause of the following exception: 
    22520  
    22521 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    22522 set 
    22523  
    22524 The above exception was the direct cause of the following exception: 
    22525  
    22526 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    22527 set 
    22528  
    22529 The above exception was the direct cause of the following exception: 
    22530  
    22531 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    22532 exception set 
    22533  
    22534 The above exception was the direct cause of the following exception: 
    22535  
    22536 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    22537 exception set 
    22538  
    22539 The above exception was the direct cause of the following exception: 
    22540  
    22541 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    22542 exception set 
    22543  
    22544 The above exception was the direct cause of the following exception: 
    22545  
    22546 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    22547 exception set 
    22548  
    22549 The above exception was the direct cause of the following exception: 
    22550  
    22551 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    22552 exception set 
    22553  
    22554 The above exception was the direct cause of the following exception: 
    22555  
    22556 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    22557 exception set 
    22558  
    22559 The above exception was the direct cause of the following exception: 
    22560  
    22561 Traceback (most recent call last): 
    22562 File
    22563 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22564 packages/chimerax/core/logger.py", line 334, in ehook 
    22565 self.session.ui.thread_safe( 
    22566 File
    22567 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22568 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    22569 func(*args, **kw) 
    22570 File
    22571 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22572 packages/chimerax/core/logger.py", line 516, in report_exception 
    22573 self.bug(err_msg.replace("\n", "<br>"), is_html=True) 
    22574 File
    22575 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22576 packages/chimerax/core/logger.py", line 394, in bug 
    22577 self._log( 
    22578 File
    22579 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22580 packages/chimerax/core/logger.py", line 572, in _log 
    22581 if log.log(*args): 
    22582 ^^^^^^^^^^^^^^ 
    22583 File
    22584 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22585 packages/chimerax/log/tool.py", line 342, in log 
    22586 self.session.ui.thread_safe(f) 
    22587 File
    22588 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22589 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    22590 func(*args, **kw) 
    22591 File
    22592 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22593 packages/chimerax/log/tool.py", line 341, in <lambda> 
    22594 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    22595 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22596 File
    22597 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22598 packages/chimerax/log/tool.py", line 262, in show_error_message 
    22599 ed.showMessage(msg) 
    22600 SystemError: <built-in method showMessage of BiggerErrorDialog object at
    22601 0x16be8d240> returned a result with an exception set 
    22602  
    22603 Original exception was: 
    22604 Traceback (most recent call last): 
    22605 File
    22606 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22607 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22608 mouseMoveEvent 
    22609 self.moveSegmentationPuck(x, y, record_seg=False) 
    22610 File
    22611 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22612 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22613 moveSegmentationPuck 
    22614 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22615 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22616 File
    22617 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22618 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22619 return self.position.origin() 
    22620 ^^^^^^^^^^^^^ 
    22621 File
    22622 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22623 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22624 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22625 self.name) 
    22626 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    22627 cursor" 
    22628 Traceback (most recent call last): 
    22629 File
    22630 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22631 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    22632 self.enterEvent() 
    22633 File
    22634 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22635 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    22636 self.segmentation_tool.make_puck_visible(self.axis) 
    22637 File
    22638 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22639 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    22640 make_puck_visible 
    22641 self.segmentation_cursors[axis].display = True 
    22642 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22643 File
    22644 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22645 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    22646 super(Drawing, self).__setattr__(key, value) 
    22647 File
    22648 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22649 packages/chimerax/core/models.py", line 345, in _set_display 
    22650 Drawing.set_display(self, display) 
    22651 File
    22652 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22653 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    22654 dp = self.display_positions 
    22655 ^^^^^^^^^^^^^^^^^^^^^^ 
    22656 File
    22657 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22658 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    22659 dp = ones((len(self._positions),), bool) 
    22660 ^^^^^^^^^^^^^^^^^^^^ 
    22661 TypeError: object of type 'NoneType' has no len() 
    22662  
    22663 TypeError: object of type 'NoneType' has no len() 
    22664  
    22665 File
    22666 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22667 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    22668 dp = ones((len(self._positions),), bool) 
    22669 ^^^^^^^^^^^^^^^^^^^^ 
    22670  
    22671 See log for complete Python traceback. 
    22672  
    22673 Traceback (most recent call last): 
    22674 File
    22675 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22676 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    22677 self.leaveEvent() 
    22678 File
    22679 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22680 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    22681 self.segmentation_tool.make_puck_invisible(self.axis) 
    22682 File
    22683 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22684 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    22685 make_puck_invisible 
    22686 self.segmentation_cursors[axis].display = False 
    22687 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22688 File
    22689 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22690 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    22691 super(Drawing, self).__setattr__(key, value) 
    22692 File
    22693 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22694 packages/chimerax/core/models.py", line 345, in _set_display 
    22695 Drawing.set_display(self, display) 
    22696 File
    22697 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22698 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    22699 dp = self.display_positions 
    22700 ^^^^^^^^^^^^^^^^^^^^^^ 
    22701 File
    22702 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22703 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    22704 dp = ones((len(self._positions),), bool) 
    22705 ^^^^^^^^^^^^^^^^^^^^ 
    22706 TypeError: object of type 'NoneType' has no len() 
    22707  
    22708 TypeError: object of type 'NoneType' has no len() 
    22709  
    22710 File
    22711 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22712 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    22713 dp = ones((len(self._positions),), bool) 
    22714 ^^^^^^^^^^^^^^^^^^^^ 
    22715  
    22716 See log for complete Python traceback. 
    22717  
    22718 Traceback (most recent call last): 
    22719 File
    22720 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22721 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    22722 self.enterEvent() 
    22723 File
    22724 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22725 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    22726 self.segmentation_tool.make_puck_visible(self.axis) 
    22727 File
    22728 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22729 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    22730 make_puck_visible 
    22731 self.segmentation_cursors[axis].display = True 
    22732 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22733 File
    22734 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22735 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    22736 super(Drawing, self).__setattr__(key, value) 
    22737 File
    22738 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22739 packages/chimerax/core/models.py", line 345, in _set_display 
    22740 Drawing.set_display(self, display) 
    22741 File
    22742 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22743 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    22744 dp = self.display_positions 
    22745 ^^^^^^^^^^^^^^^^^^^^^^ 
    22746 File
    22747 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22748 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    22749 dp = ones((len(self._positions),), bool) 
    22750 ^^^^^^^^^^^^^^^^^^^^ 
    22751 TypeError: object of type 'NoneType' has no len() 
    22752  
    22753 TypeError: object of type 'NoneType' has no len() 
    22754  
    22755 File
    22756 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22757 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    22758 dp = ones((len(self._positions),), bool) 
    22759 ^^^^^^^^^^^^^^^^^^^^ 
    22760  
    22761 See log for complete Python traceback. 
    22762  
    22763 Traceback (most recent call last): 
    22764 File
    22765 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22766 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22767 mouseMoveEvent 
    22768 self.moveSegmentationPuck(x, y, record_seg=False) 
    22769 File
    22770 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22771 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22772 moveSegmentationPuck 
    22773 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22774 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22775 File
    22776 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22777 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22778 return self.position.origin() 
    22779 ^^^^^^^^^^^^^ 
    22780 File
    22781 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22782 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22783 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22784 self.name) 
    22785 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    22786 cursor" 
    22787  
    22788 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    22789 cursor" 
    22790  
    22791 File
    22792 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22793 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22794 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22795 self.name) 
    22796  
    22797 See log for complete Python traceback. 
    22798  
    22799 Traceback (most recent call last): 
    22800 File
    22801 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22802 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22803 mouseMoveEvent 
    22804 self.moveSegmentationPuck(x, y, record_seg=False) 
    22805 File
    22806 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22807 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22808 moveSegmentationPuck 
    22809 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22810 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22811 File
    22812 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22813 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22814 return self.position.origin() 
    22815 ^^^^^^^^^^^^^ 
    22816 File
    22817 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22818 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22819 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22820 self.name) 
    22821 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    22822 cursor" 
    22823  
    22824 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    22825 cursor" 
    22826  
    22827 File
    22828 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22829 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22830 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22831 self.name) 
    22832  
    22833 See log for complete Python traceback. 
    22834  
    22835 Traceback (most recent call last): 
    22836 File
    22837 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22838 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22839 mouseMoveEvent 
    22840 self.moveSegmentationPuck(x, y, record_seg=False) 
    22841 File
    22842 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22843 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22844 moveSegmentationPuck 
    22845 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22846 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22847 File
    22848 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22849 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22850 return self.position.origin() 
    22851 ^^^^^^^^^^^^^ 
    22852 File
    22853 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22854 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22855 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22856 self.name) 
    22857 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    22858 cursor" 
    22859  
    22860 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    22861 cursor" 
    22862  
    22863 File
    22864 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22865 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22866 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22867 self.name) 
    22868  
    22869 See log for complete Python traceback. 
    22870  
    22871 Traceback (most recent call last): 
    22872 File
    22873 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22874 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22875 mouseMoveEvent 
    22876 self.moveSegmentationPuck(x, y, record_seg=False) 
    22877 File
    22878 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22879 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22880 moveSegmentationPuck 
    22881 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22882 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22883 File
    22884 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22885 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22886 return self.position.origin() 
    22887 ^^^^^^^^^^^^^ 
    22888 File
    22889 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22890 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22891 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22892 self.name) 
    22893 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    22894 cursor" 
    22895  
    22896 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    22897 cursor" 
    22898  
    22899 File
    22900 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22901 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22902 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22903 self.name) 
    22904  
    22905 See log for complete Python traceback. 
    22906  
    22907 Traceback (most recent call last): 
    22908 File
    22909 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22910 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22911 mouseMoveEvent 
    22912 self.moveSegmentationPuck(x, y, record_seg=False) 
    22913 File
    22914 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22915 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22916 moveSegmentationPuck 
    22917 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22918 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22919 File
    22920 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22921 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22922 return self.position.origin() 
    22923 ^^^^^^^^^^^^^ 
    22924 File
    22925 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22926 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22927 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22928 self.name) 
    22929 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    22930 cursor" 
    22931  
    22932 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    22933 cursor" 
    22934  
    22935 File
    22936 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22937 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22938 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22939 self.name) 
    22940  
    22941 See log for complete Python traceback. 
    22942  
    22943 Traceback (most recent call last): 
    22944 File
    22945 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22946 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22947 mouseMoveEvent 
    22948 self.moveSegmentationPuck(x, y, record_seg=False) 
    22949 File
    22950 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22951 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22952 moveSegmentationPuck 
    22953 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22954 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22955 File
    22956 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22957 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22958 return self.position.origin() 
    22959 ^^^^^^^^^^^^^ 
    22960 File
    22961 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22962 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22963 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22964 self.name) 
    22965 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    22966 cursor" 
    22967  
    22968 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    22969 cursor" 
    22970  
    22971 File
    22972 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22973 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22974 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22975 self.name) 
    22976  
    22977 See log for complete Python traceback. 
    22978  
    22979 Traceback (most recent call last): 
    22980 File
    22981 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22982 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22983 mouseMoveEvent 
    22984 self.moveSegmentationPuck(x, y, record_seg=False) 
    22985 File
    22986 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22987 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22988 moveSegmentationPuck 
    22989 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22990 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22991 File
    22992 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22993 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22994 return self.position.origin() 
    22995 ^^^^^^^^^^^^^ 
    22996 File
    22997 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22998 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22999 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23000 self.name) 
    23001 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23002 cursor" 
    23003  
    23004 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23005 cursor" 
    23006  
    23007 File
    23008 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23009 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23010 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23011 self.name) 
    23012  
    23013 See log for complete Python traceback. 
    23014  
    23015 Traceback (most recent call last): 
    23016 File
    23017 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23018 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23019 mouseMoveEvent 
    23020 self.moveSegmentationPuck(x, y, record_seg=False) 
    23021 File
    23022 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23023 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23024 moveSegmentationPuck 
    23025 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23026 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23027 File
    23028 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23029 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23030 return self.position.origin() 
    23031 ^^^^^^^^^^^^^ 
    23032 File
    23033 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23034 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23035 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23036 self.name) 
    23037 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23038 cursor" 
    23039  
    23040 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23041 cursor" 
    23042  
    23043 File
    23044 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23045 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23046 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23047 self.name) 
    23048  
    23049 See log for complete Python traceback. 
    23050  
    23051 Traceback (most recent call last): 
    23052 File
    23053 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23054 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23055 mouseMoveEvent 
    23056 self.moveSegmentationPuck(x, y, record_seg=False) 
    23057 File
    23058 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23059 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23060 moveSegmentationPuck 
    23061 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23062 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23063 File
    23064 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23065 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23066 return self.position.origin() 
    23067 ^^^^^^^^^^^^^ 
    23068 File
    23069 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23070 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23071 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23072 self.name) 
    23073 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23074 cursor" 
    23075  
    23076 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23077 cursor" 
    23078  
    23079 File
    23080 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23081 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23082 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23083 self.name) 
    23084  
    23085 See log for complete Python traceback. 
    23086  
    23087 Traceback (most recent call last): 
    23088 File
    23089 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23090 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23091 mouseMoveEvent 
    23092 self.moveSegmentationPuck(x, y, record_seg=False) 
    23093 File
    23094 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23095 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23096 moveSegmentationPuck 
    23097 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23098 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23099 File
    23100 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23101 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23102 return self.position.origin() 
    23103 ^^^^^^^^^^^^^ 
    23104 File
    23105 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23106 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23107 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23108 self.name) 
    23109 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23110 cursor" 
    23111  
    23112 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23113 cursor" 
    23114  
    23115 File
    23116 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23117 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23118 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23119 self.name) 
    23120  
    23121 See log for complete Python traceback. 
    23122  
    23123 Traceback (most recent call last): 
    23124 File
    23125 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23126 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23127 mouseMoveEvent 
    23128 self.moveSegmentationPuck(x, y, record_seg=False) 
    23129 File
    23130 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23131 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23132 moveSegmentationPuck 
    23133 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23134 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23135 File
    23136 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23137 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23138 return self.position.origin() 
    23139 ^^^^^^^^^^^^^ 
    23140 File
    23141 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23142 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23143 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23144 self.name) 
    23145 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23146 cursor" 
    23147  
    23148 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23149 cursor" 
    23150  
    23151 File
    23152 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23153 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23154 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23155 self.name) 
    23156  
    23157 See log for complete Python traceback. 
    23158  
    23159 Traceback (most recent call last): 
    23160 File
    23161 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23162 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23163 mouseMoveEvent 
    23164 self.moveSegmentationPuck(x, y, record_seg=False) 
    23165 File
    23166 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23167 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23168 moveSegmentationPuck 
    23169 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23170 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23171 File
    23172 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23173 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23174 return self.position.origin() 
    23175 ^^^^^^^^^^^^^ 
    23176 File
    23177 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23178 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23179 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23180 self.name) 
    23181 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23182 cursor" 
    23183  
    23184 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23185 cursor" 
    23186  
    23187 File
    23188 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23189 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23190 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23191 self.name) 
    23192  
    23193 See log for complete Python traceback. 
    23194  
    23195 Traceback (most recent call last): 
    23196 File
    23197 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23198 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23199 mouseMoveEvent 
    23200 self.moveSegmentationPuck(x, y, record_seg=False) 
    23201 File
    23202 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23203 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23204 moveSegmentationPuck 
    23205 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23206 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23207 File
    23208 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23209 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23210 return self.position.origin() 
    23211 ^^^^^^^^^^^^^ 
    23212 File
    23213 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23214 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23215 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23216 self.name) 
    23217 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23218 cursor" 
    23219  
    23220 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23221 cursor" 
    23222  
    23223 File
    23224 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23225 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23226 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23227 self.name) 
    23228  
    23229 See log for complete Python traceback. 
    23230  
    23231 Traceback (most recent call last): 
    23232 File
    23233 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23234 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23235 mouseMoveEvent 
    23236 self.moveSegmentationPuck(x, y, record_seg=False) 
    23237 File
    23238 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23239 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23240 moveSegmentationPuck 
    23241 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23242 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23243 File
    23244 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23245 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23246 return self.position.origin() 
    23247 ^^^^^^^^^^^^^ 
    23248 File
    23249 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23250 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23251 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23252 self.name) 
    23253 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23254 cursor" 
    23255  
    23256 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23257 cursor" 
    23258  
    23259 File
    23260 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23261 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23262 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23263 self.name) 
    23264  
    23265 See log for complete Python traceback. 
    23266  
    23267 Traceback (most recent call last): 
    23268 File
    23269 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23270 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23271 mouseMoveEvent 
    23272 self.moveSegmentationPuck(x, y, record_seg=False) 
    23273 File
    23274 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23275 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23276 moveSegmentationPuck 
    23277 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23278 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23279 File
    23280 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23281 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23282 return self.position.origin() 
    23283 ^^^^^^^^^^^^^ 
    23284 File
    23285 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23286 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23287 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23288 self.name) 
    23289 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23290 cursor" 
    23291  
    23292 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23293 cursor" 
    23294  
    23295 File
    23296 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23297 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23298 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23299 self.name) 
    23300  
    23301 See log for complete Python traceback. 
    23302  
    23303 Traceback (most recent call last): 
    23304 File
    23305 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23306 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23307 mouseMoveEvent 
    23308 self.moveSegmentationPuck(x, y, record_seg=False) 
    23309 File
    23310 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23311 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23312 moveSegmentationPuck 
    23313 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23314 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23315 File
    23316 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23317 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23318 return self.position.origin() 
    23319 ^^^^^^^^^^^^^ 
    23320 File
    23321 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23322 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23323 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23324 self.name) 
    23325 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23326 cursor" 
    23327  
    23328 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23329 cursor" 
    23330  
    23331 File
    23332 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23333 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23334 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23335 self.name) 
    23336  
    23337 See log for complete Python traceback. 
    23338  
    23339 Traceback (most recent call last): 
    23340 File
    23341 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23342 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23343 mouseMoveEvent 
    23344 self.moveSegmentationPuck(x, y, record_seg=False) 
    23345 File
    23346 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23347 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23348 moveSegmentationPuck 
    23349 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23350 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23351 File
    23352 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23353 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23354 return self.position.origin() 
    23355 ^^^^^^^^^^^^^ 
    23356 File
    23357 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23358 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23359 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23360 self.name) 
    23361 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23362 cursor" 
    23363  
    23364 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23365 cursor" 
    23366  
    23367 File
    23368 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23369 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23370 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23371 self.name) 
    23372  
    23373 See log for complete Python traceback. 
    23374  
    23375 Traceback (most recent call last): 
    23376 File
    23377 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23378 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23379 mouseMoveEvent 
    23380 self.moveSegmentationPuck(x, y, record_seg=False) 
    23381 File
    23382 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23383 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23384 moveSegmentationPuck 
    23385 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23386 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23387 File
    23388 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23389 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23390 return self.position.origin() 
    23391 ^^^^^^^^^^^^^ 
    23392 File
    23393 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23394 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23395 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23396 self.name) 
    23397 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23398 cursor" 
    23399  
    23400 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23401 cursor" 
    23402  
    23403 File
    23404 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23405 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23406 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23407 self.name) 
    23408  
    23409 See log for complete Python traceback. 
    23410  
    23411 Traceback (most recent call last): 
    23412 File
    23413 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23414 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23415 mouseMoveEvent 
    23416 self.moveSegmentationPuck(x, y, record_seg=False) 
    23417 File
    23418 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23419 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23420 moveSegmentationPuck 
    23421 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23422 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23423 File
    23424 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23425 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23426 return self.position.origin() 
    23427 ^^^^^^^^^^^^^ 
    23428 File
    23429 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23430 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23431 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23432 self.name) 
    23433 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23434 cursor" 
    23435  
    23436 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23437 cursor" 
    23438  
    23439 File
    23440 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23441 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23442 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23443 self.name) 
    23444  
    23445 See log for complete Python traceback. 
    23446  
    23447 Traceback (most recent call last): 
    23448 File
    23449 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23450 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23451 mouseMoveEvent 
    23452 self.moveSegmentationPuck(x, y, record_seg=False) 
    23453 File
    23454 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23455 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23456 moveSegmentationPuck 
    23457 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23458 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23459 File
    23460 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23461 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23462 return self.position.origin() 
    23463 ^^^^^^^^^^^^^ 
    23464 File
    23465 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23466 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23467 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23468 self.name) 
    23469 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23470 cursor" 
    23471  
    23472 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23473 cursor" 
    23474  
    23475 File
    23476 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23477 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23478 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23479 self.name) 
    23480  
    23481 See log for complete Python traceback. 
    23482  
    23483 Traceback (most recent call last): 
    23484 File
    23485 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23486 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23487 mouseMoveEvent 
    23488 self.moveSegmentationPuck(x, y, record_seg=False) 
    23489 File
    23490 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23491 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23492 moveSegmentationPuck 
    23493 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23494 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23495 File
    23496 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23497 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23498 return self.position.origin() 
    23499 ^^^^^^^^^^^^^ 
    23500 File
    23501 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23502 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23503 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23504 self.name) 
    23505 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23506 cursor" 
    23507  
    23508 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23509 cursor" 
    23510  
    23511 File
    23512 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23513 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23514 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23515 self.name) 
    23516  
    23517 See log for complete Python traceback. 
    23518  
    23519 Traceback (most recent call last): 
    23520 File
    23521 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23522 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23523 mouseMoveEvent 
    23524 self.moveSegmentationPuck(x, y, record_seg=False) 
    23525 File
    23526 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23527 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23528 moveSegmentationPuck 
    23529 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23530 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23531 File
    23532 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23533 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23534 return self.position.origin() 
    23535 ^^^^^^^^^^^^^ 
    23536 File
    23537 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23538 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23539 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23540 self.name) 
    23541 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23542 cursor" 
    23543  
    23544 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23545 cursor" 
    23546  
    23547 File
    23548 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23549 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23550 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23551 self.name) 
    23552  
    23553 See log for complete Python traceback. 
    23554  
    23555 Traceback (most recent call last): 
    23556 File
    23557 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23558 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23559 mouseMoveEvent 
    23560 self.moveSegmentationPuck(x, y, record_seg=False) 
    23561 File
    23562 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23563 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23564 moveSegmentationPuck 
    23565 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23566 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23567 File
    23568 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23569 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23570 return self.position.origin() 
    23571 ^^^^^^^^^^^^^ 
    23572 File
    23573 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23574 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23575 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23576 self.name) 
    23577 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23578 cursor" 
    23579  
    23580 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23581 cursor" 
    23582  
    23583 File
    23584 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23585 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23586 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23587 self.name) 
    23588  
    23589 See log for complete Python traceback. 
    23590  
    23591 Traceback (most recent call last): 
    23592 File
    23593 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23594 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23595 mouseMoveEvent 
    23596 self.moveSegmentationPuck(x, y, record_seg=False) 
    23597 File
    23598 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23599 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23600 moveSegmentationPuck 
    23601 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23602 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23603 File
    23604 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23605 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23606 return self.position.origin() 
    23607 ^^^^^^^^^^^^^ 
    23608 File
    23609 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23610 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23611 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23612 self.name) 
    23613 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23614 cursor" 
    23615  
    23616 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23617 cursor" 
    23618  
    23619 File
    23620 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23621 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23622 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23623 self.name) 
    23624  
    23625 See log for complete Python traceback. 
    23626  
    23627 Traceback (most recent call last): 
    23628 File
    23629 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23630 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23631 mouseMoveEvent 
    23632 self.moveSegmentationPuck(x, y, record_seg=False) 
    23633 File
    23634 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23635 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23636 moveSegmentationPuck 
    23637 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23638 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23639 File
    23640 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23641 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23642 return self.position.origin() 
    23643 ^^^^^^^^^^^^^ 
    23644 File
    23645 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23646 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23647 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23648 self.name) 
    23649 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23650 cursor" 
    23651  
    23652 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23653 cursor" 
    23654  
    23655 File
    23656 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23657 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23658 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23659 self.name) 
    23660  
    23661 See log for complete Python traceback. 
    23662  
    23663 Traceback (most recent call last): 
    23664 File
    23665 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23666 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23667 mouseMoveEvent 
    23668 self.moveSegmentationPuck(x, y, record_seg=False) 
    23669 File
    23670 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23671 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23672 moveSegmentationPuck 
    23673 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23674 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23675 File
    23676 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23677 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23678 return self.position.origin() 
    23679 ^^^^^^^^^^^^^ 
    23680 File
    23681 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23682 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23683 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23684 self.name) 
    23685 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23686 cursor" 
    23687  
    23688 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23689 cursor" 
    23690  
    23691 File
    23692 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23693 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23694 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23695 self.name) 
    23696  
    23697 See log for complete Python traceback. 
    23698  
    23699 Traceback (most recent call last): 
    23700 File
    23701 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23702 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23703 mouseMoveEvent 
    23704 self.moveSegmentationPuck(x, y, record_seg=False) 
    23705 File
    23706 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23707 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23708 moveSegmentationPuck 
    23709 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23710 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23711 File
    23712 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23713 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23714 return self.position.origin() 
    23715 ^^^^^^^^^^^^^ 
    23716 File
    23717 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23718 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23719 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23720 self.name) 
    23721 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23722 cursor" 
    23723  
    23724 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23725 cursor" 
    23726  
    23727 File
    23728 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23729 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23730 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23731 self.name) 
    23732  
    23733 See log for complete Python traceback. 
    23734  
    23735 Traceback (most recent call last): 
    23736 File
    23737 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23738 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23739 mouseMoveEvent 
    23740 self.moveSegmentationPuck(x, y, record_seg=False) 
    23741 File
    23742 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23743 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23744 moveSegmentationPuck 
    23745 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23746 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23747 File
    23748 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23749 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23750 return self.position.origin() 
    23751 ^^^^^^^^^^^^^ 
    23752 File
    23753 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23754 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23755 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23756 self.name) 
    23757 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23758 cursor" 
    23759  
    23760 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23761 cursor" 
    23762  
    23763 File
    23764 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23765 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23766 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23767 self.name) 
    23768  
    23769 See log for complete Python traceback. 
    23770  
    23771 Traceback (most recent call last): 
    23772 File
    23773 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23774 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23775 mouseMoveEvent 
    23776 self.moveSegmentationPuck(x, y, record_seg=False) 
    23777 File
    23778 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23779 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23780 moveSegmentationPuck 
    23781 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23782 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23783 File
    23784 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23785 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23786 return self.position.origin() 
    23787 ^^^^^^^^^^^^^ 
    23788 File
    23789 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23790 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23791 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23792 self.name) 
    23793 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23794 cursor" 
    23795  
    23796 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23797 cursor" 
    23798  
    23799 File
    23800 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23801 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23802 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23803 self.name) 
    23804  
    23805 See log for complete Python traceback. 
    23806  
    23807 Traceback (most recent call last): 
    23808 File
    23809 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23810 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23811 mouseMoveEvent 
    23812 self.moveSegmentationPuck(x, y, record_seg=False) 
    23813 File
    23814 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23815 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23816 moveSegmentationPuck 
    23817 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23818 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23819 File
    23820 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23821 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23822 return self.position.origin() 
    23823 ^^^^^^^^^^^^^ 
    23824 File
    23825 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23826 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23827 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23828 self.name) 
    23829 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23830 cursor" 
    23831  
    23832 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23833 cursor" 
    23834  
    23835 File
    23836 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23837 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23838 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23839 self.name) 
    23840  
    23841 See log for complete Python traceback. 
    23842  
    23843 Traceback (most recent call last): 
    23844 File
    23845 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23846 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23847 mouseMoveEvent 
    23848 self.moveSegmentationPuck(x, y, record_seg=False) 
    23849 File
    23850 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23851 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23852 moveSegmentationPuck 
    23853 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23854 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23855 File
    23856 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23857 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23858 return self.position.origin() 
    23859 ^^^^^^^^^^^^^ 
    23860 File
    23861 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23862 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23863 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23864 self.name) 
    23865 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23866 cursor" 
    23867  
    23868 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23869 cursor" 
    23870  
    23871 File
    23872 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23873 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23874 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23875 self.name) 
    23876  
    23877 See log for complete Python traceback. 
    23878  
    23879 Traceback (most recent call last): 
    23880 File
    23881 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23882 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23883 mouseMoveEvent 
    23884 self.moveSegmentationPuck(x, y, record_seg=False) 
    23885 File
    23886 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23887 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23888 moveSegmentationPuck 
    23889 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23890 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23891 File
    23892 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23893 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23894 return self.position.origin() 
    23895 ^^^^^^^^^^^^^ 
    23896 File
    23897 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23898 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23899 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23900 self.name) 
    23901 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23902 cursor" 
    23903  
    23904 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23905 cursor" 
    23906  
    23907 File
    23908 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23909 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23910 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23911 self.name) 
    23912  
    23913 See log for complete Python traceback. 
    23914  
    23915 Traceback (most recent call last): 
    23916 File
    23917 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23918 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23919 mouseMoveEvent 
    23920 self.moveSegmentationPuck(x, y, record_seg=False) 
    23921 File
    23922 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23923 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23924 moveSegmentationPuck 
    23925 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23926 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23927 File
    23928 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23929 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23930 return self.position.origin() 
    23931 ^^^^^^^^^^^^^ 
    23932 File
    23933 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23934 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23935 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23936 self.name) 
    23937 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23938 cursor" 
    23939  
    23940 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23941 cursor" 
    23942  
    23943 File
    23944 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23945 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23946 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23947 self.name) 
    23948  
    23949 See log for complete Python traceback. 
    23950  
    23951 Traceback (most recent call last): 
    23952 File
    23953 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23954 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23955 mouseMoveEvent 
    23956 self.moveSegmentationPuck(x, y, record_seg=False) 
    23957 File
    23958 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23959 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23960 moveSegmentationPuck 
    23961 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23962 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23963 File
    23964 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23965 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23966 return self.position.origin() 
    23967 ^^^^^^^^^^^^^ 
    23968 File
    23969 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23970 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23971 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23972 self.name) 
    23973 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23974 cursor" 
    23975  
    23976 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23977 cursor" 
    23978  
    23979 File
    23980 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23981 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23982 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23983 self.name) 
    23984  
    23985 See log for complete Python traceback. 
    23986  
    23987 Traceback (most recent call last): 
    23988 File
    23989 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23990 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23991 mouseMoveEvent 
    23992 self.moveSegmentationPuck(x, y, record_seg=False) 
    23993 File
    23994 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23995 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23996 moveSegmentationPuck 
    23997 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23998 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23999 File
    24000 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24001 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24002 return self.position.origin() 
    24003 ^^^^^^^^^^^^^ 
    24004 File
    24005 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24006 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24007 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24008 self.name) 
    24009 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24010 cursor" 
    24011  
    24012 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24013 cursor" 
    24014  
    24015 File
    24016 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24017 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24018 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24019 self.name) 
    24020  
    24021 See log for complete Python traceback. 
    24022  
    24023 Traceback (most recent call last): 
    24024 File
    24025 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24026 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24027 mouseMoveEvent 
    24028 self.moveSegmentationPuck(x, y, record_seg=False) 
    24029 File
    24030 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24031 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24032 moveSegmentationPuck 
    24033 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24034 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24035 File
    24036 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24037 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24038 return self.position.origin() 
    24039 ^^^^^^^^^^^^^ 
    24040 File
    24041 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24042 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24043 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24044 self.name) 
    24045 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24046 cursor" 
    24047  
    24048 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24049 cursor" 
    24050  
    24051 File
    24052 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24053 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24054 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24055 self.name) 
    24056  
    24057 See log for complete Python traceback. 
    24058  
    24059 Traceback (most recent call last): 
    24060 File
    24061 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24062 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24063 mouseMoveEvent 
    24064 self.moveSegmentationPuck(x, y, record_seg=False) 
    24065 File
    24066 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24067 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24068 moveSegmentationPuck 
    24069 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24070 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24071 File
    24072 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24073 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24074 return self.position.origin() 
    24075 ^^^^^^^^^^^^^ 
    24076 File
    24077 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24078 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24079 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24080 self.name) 
    24081 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24082 cursor" 
    24083  
    24084 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24085 cursor" 
    24086  
    24087 File
    24088 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24089 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24090 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24091 self.name) 
    24092  
    24093 See log for complete Python traceback. 
    24094  
    24095 Traceback (most recent call last): 
    24096 File
    24097 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24098 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24099 mouseMoveEvent 
    24100 self.moveSegmentationPuck(x, y, record_seg=False) 
    24101 File
    24102 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24103 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24104 moveSegmentationPuck 
    24105 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24106 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24107 File
    24108 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24109 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24110 return self.position.origin() 
    24111 ^^^^^^^^^^^^^ 
    24112 File
    24113 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24114 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24115 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24116 self.name) 
    24117 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24118 cursor" 
    24119  
    24120 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24121 cursor" 
    24122  
    24123 File
    24124 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24125 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24126 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24127 self.name) 
    24128  
    24129 See log for complete Python traceback. 
    24130  
    24131 Traceback (most recent call last): 
    24132 File
    24133 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24134 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24135 mouseMoveEvent 
    24136 self.moveSegmentationPuck(x, y, record_seg=False) 
    24137 File
    24138 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24139 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24140 moveSegmentationPuck 
    24141 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24142 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24143 File
    24144 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24145 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24146 return self.position.origin() 
    24147 ^^^^^^^^^^^^^ 
    24148 File
    24149 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24150 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24151 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24152 self.name) 
    24153 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24154 cursor" 
    24155  
    24156 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24157 cursor" 
    24158  
    24159 File
    24160 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24161 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24162 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24163 self.name) 
    24164  
    24165 See log for complete Python traceback. 
    24166  
    24167 Traceback (most recent call last): 
    24168 File
    24169 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24170 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24171 mouseMoveEvent 
    24172 self.moveSegmentationPuck(x, y, record_seg=False) 
    24173 File
    24174 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24175 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24176 moveSegmentationPuck 
    24177 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24178 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24179 File
    24180 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24181 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24182 return self.position.origin() 
    24183 ^^^^^^^^^^^^^ 
    24184 File
    24185 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24186 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24187 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24188 self.name) 
    24189 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24190 cursor" 
    24191  
    24192 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24193 cursor" 
    24194  
    24195 File
    24196 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24197 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24198 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24199 self.name) 
    24200  
    24201 See log for complete Python traceback. 
    24202  
    24203 Traceback (most recent call last): 
    24204 File
    24205 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24206 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24207 mouseMoveEvent 
    24208 self.moveSegmentationPuck(x, y, record_seg=False) 
    24209 File
    24210 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24211 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24212 moveSegmentationPuck 
    24213 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24214 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24215 File
    24216 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24217 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24218 return self.position.origin() 
    24219 ^^^^^^^^^^^^^ 
    24220 File
    24221 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24222 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24223 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24224 self.name) 
    24225 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24226 cursor" 
    24227  
    24228 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24229 cursor" 
    24230  
    24231 File
    24232 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24233 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24234 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24235 self.name) 
    24236  
    24237 See log for complete Python traceback. 
    24238  
    24239 Traceback (most recent call last): 
    24240 File
    24241 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24242 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24243 mouseMoveEvent 
    24244 self.moveSegmentationPuck(x, y, record_seg=False) 
    24245 File
    24246 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24247 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24248 moveSegmentationPuck 
    24249 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24250 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24251 File
    24252 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24253 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24254 return self.position.origin() 
    24255 ^^^^^^^^^^^^^ 
    24256 File
    24257 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24258 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24259 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24260 self.name) 
    24261 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24262 cursor" 
    24263  
    24264 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24265 cursor" 
    24266  
    24267 File
    24268 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24269 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24270 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24271 self.name) 
    24272  
    24273 See log for complete Python traceback. 
    24274  
    24275 Traceback (most recent call last): 
    24276 File
    24277 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24278 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24279 mouseMoveEvent 
    24280 self.moveSegmentationPuck(x, y, record_seg=False) 
    24281 File
    24282 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24283 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24284 moveSegmentationPuck 
    24285 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24286 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24287 File
    24288 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24289 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24290 return self.position.origin() 
    24291 ^^^^^^^^^^^^^ 
    24292 File
    24293 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24294 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24295 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24296 self.name) 
    24297 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24298 cursor" 
    24299  
    24300 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24301 cursor" 
    24302  
    24303 File
    24304 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24305 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24306 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24307 self.name) 
    24308  
    24309 See log for complete Python traceback. 
    24310  
    24311 Traceback (most recent call last): 
    24312 File
    24313 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24314 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24315 mouseMoveEvent 
    24316 self.moveSegmentationPuck(x, y, record_seg=False) 
    24317 File
    24318 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24319 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24320 moveSegmentationPuck 
    24321 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24322 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24323 File
    24324 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24325 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24326 return self.position.origin() 
    24327 ^^^^^^^^^^^^^ 
    24328 File
    24329 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24330 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24331 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24332 self.name) 
    24333 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24334 cursor" 
    24335  
    24336 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24337 cursor" 
    24338  
    24339 File
    24340 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24341 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24342 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24343 self.name) 
    24344  
    24345 See log for complete Python traceback. 
    24346  
    24347 Traceback (most recent call last): 
    24348 File
    24349 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24350 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24351 mouseMoveEvent 
    24352 self.moveSegmentationPuck(x, y, record_seg=False) 
    24353 File
    24354 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24355 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24356 moveSegmentationPuck 
    24357 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24358 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24359 File
    24360 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24361 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24362 return self.position.origin() 
    24363 ^^^^^^^^^^^^^ 
    24364 File
    24365 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24366 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24367 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24368 self.name) 
    24369 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24370 cursor" 
    24371  
    24372 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24373 cursor" 
    24374  
    24375 File
    24376 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24377 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24378 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24379 self.name) 
    24380  
    24381 See log for complete Python traceback. 
    24382  
    24383 Traceback (most recent call last): 
    24384 File
    24385 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24386 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24387 mouseMoveEvent 
    24388 self.moveSegmentationPuck(x, y, record_seg=False) 
    24389 File
    24390 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24391 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24392 moveSegmentationPuck 
    24393 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24394 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24395 File
    24396 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24397 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24398 return self.position.origin() 
    24399 ^^^^^^^^^^^^^ 
    24400 File
    24401 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24402 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24403 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24404 self.name) 
    24405 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24406 cursor" 
    24407  
    24408 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24409 cursor" 
    24410  
    24411 File
    24412 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24413 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24414 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24415 self.name) 
    24416  
    24417 See log for complete Python traceback. 
    24418  
    24419 Traceback (most recent call last): 
    24420 File
    24421 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24422 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24423 mouseMoveEvent 
    24424 self.moveSegmentationPuck(x, y, record_seg=False) 
    24425 File
    24426 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24427 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24428 moveSegmentationPuck 
    24429 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24430 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24431 File
    24432 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24433 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24434 return self.position.origin() 
    24435 ^^^^^^^^^^^^^ 
    24436 File
    24437 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24438 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24439 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24440 self.name) 
    24441 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24442 cursor" 
    24443  
    24444 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24445 cursor" 
    24446  
    24447 File
    24448 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24449 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24450 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24451 self.name) 
    24452  
    24453 See log for complete Python traceback. 
    24454  
    24455 Traceback (most recent call last): 
    24456 File
    24457 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24458 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24459 mouseMoveEvent 
    24460 self.moveSegmentationPuck(x, y, record_seg=False) 
    24461 File
    24462 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24463 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24464 moveSegmentationPuck 
    24465 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24466 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24467 File
    24468 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24469 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24470 return self.position.origin() 
    24471 ^^^^^^^^^^^^^ 
    24472 File
    24473 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24474 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24475 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24476 self.name) 
    24477 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24478 cursor" 
    24479  
    24480 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24481 cursor" 
    24482  
    24483 File
    24484 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24485 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24486 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24487 self.name) 
    24488  
    24489 See log for complete Python traceback. 
    24490  
    24491 Traceback (most recent call last): 
    24492 File
    24493 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24494 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24495 mouseMoveEvent 
    24496 self.moveSegmentationPuck(x, y, record_seg=False) 
    24497 File
    24498 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24499 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24500 moveSegmentationPuck 
    24501 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24502 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24503 File
    24504 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24505 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24506 return self.position.origin() 
    24507 ^^^^^^^^^^^^^ 
    24508 File
    24509 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24510 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24511 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24512 self.name) 
    24513 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24514 cursor" 
    24515  
    24516 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24517 cursor" 
    24518  
    24519 File
    24520 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24521 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24522 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24523 self.name) 
    24524  
    24525 See log for complete Python traceback. 
    24526  
    24527 Traceback (most recent call last): 
    24528 File
    24529 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24530 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24531 mouseMoveEvent 
    24532 self.moveSegmentationPuck(x, y, record_seg=False) 
    24533 File
    24534 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24535 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24536 moveSegmentationPuck 
    24537 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24538 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24539 File
    24540 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24541 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24542 return self.position.origin() 
    24543 ^^^^^^^^^^^^^ 
    24544 File
    24545 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24546 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24547 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24548 self.name) 
    24549 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24550 cursor" 
    24551  
    24552 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24553 cursor" 
    24554  
    24555 File
    24556 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24557 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24558 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24559 self.name) 
    24560  
    24561 See log for complete Python traceback. 
    24562  
    24563 Traceback (most recent call last): 
    24564 File
    24565 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24566 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24567 mouseMoveEvent 
    24568 self.moveSegmentationPuck(x, y, record_seg=False) 
    24569 File
    24570 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24571 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24572 moveSegmentationPuck 
    24573 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24574 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24575 File
    24576 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24577 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24578 return self.position.origin() 
    24579 ^^^^^^^^^^^^^ 
    24580 File
    24581 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24582 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24583 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24584 self.name) 
    24585 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24586 cursor" 
    24587  
    24588 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24589 cursor" 
    24590  
    24591 File
    24592 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24593 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24594 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24595 self.name) 
    24596  
    24597 See log for complete Python traceback. 
    24598  
    24599 Traceback (most recent call last): 
    24600 File
    24601 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24602 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24603 mouseMoveEvent 
    24604 self.moveSegmentationPuck(x, y, record_seg=False) 
    24605 File
    24606 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24607 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24608 moveSegmentationPuck 
    24609 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24610 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24611 File
    24612 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24613 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24614 return self.position.origin() 
    24615 ^^^^^^^^^^^^^ 
    24616 File
    24617 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24618 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24619 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24620 self.name) 
    24621 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24622 cursor" 
    24623  
    24624 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24625 cursor" 
    24626  
    24627 File
    24628 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24629 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24630 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24631 self.name) 
    24632  
    24633 See log for complete Python traceback. 
    24634  
    24635 Traceback (most recent call last): 
    24636 File
    24637 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24638 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24639 mouseMoveEvent 
    24640 self.moveSegmentationPuck(x, y, record_seg=False) 
    24641 File
    24642 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24643 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24644 moveSegmentationPuck 
    24645 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24646 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24647 File
    24648 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24649 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24650 return self.position.origin() 
    24651 ^^^^^^^^^^^^^ 
    24652 File
    24653 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24654 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24655 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24656 self.name) 
    24657 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24658 cursor" 
    24659  
    24660 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24661 cursor" 
    24662  
    24663 File
    24664 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24665 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24666 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24667 self.name) 
    24668  
    24669 See log for complete Python traceback. 
    24670  
    24671 Traceback (most recent call last): 
    24672 File
    24673 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24674 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24675 mouseMoveEvent 
    24676 self.moveSegmentationPuck(x, y, record_seg=False) 
    24677 File
    24678 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24679 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24680 moveSegmentationPuck 
    24681 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24682 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24683 File
    24684 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24685 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24686 return self.position.origin() 
    24687 ^^^^^^^^^^^^^ 
    24688 File
    24689 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24690 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24691 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24692 self.name) 
    24693 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24694 cursor" 
    24695  
    24696 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24697 cursor" 
    24698  
    24699 File
    24700 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24701 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24702 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24703 self.name) 
    24704  
    24705 See log for complete Python traceback. 
    24706  
    24707 Traceback (most recent call last): 
    24708 File
    24709 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24710 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24711 mouseMoveEvent 
    24712 self.moveSegmentationPuck(x, y, record_seg=False) 
    24713 File
    24714 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24715 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24716 moveSegmentationPuck 
    24717 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24718 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24719 File
    24720 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24721 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24722 return self.position.origin() 
    24723 ^^^^^^^^^^^^^ 
    24724 File
    24725 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24726 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24727 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24728 self.name) 
    24729 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24730 cursor" 
    24731  
    24732 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24733 cursor" 
    24734  
    24735 File
    24736 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24737 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24738 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24739 self.name) 
    24740  
    24741 See log for complete Python traceback. 
    24742  
    24743 Traceback (most recent call last): 
    24744 File
    24745 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24746 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24747 mouseMoveEvent 
    24748 self.moveSegmentationPuck(x, y, record_seg=False) 
    24749 File
    24750 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24751 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24752 moveSegmentationPuck 
    24753 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24754 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24755 File
    24756 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24757 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24758 return self.position.origin() 
    24759 ^^^^^^^^^^^^^ 
    24760 File
    24761 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24762 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24763 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24764 self.name) 
    24765 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24766 cursor" 
    24767  
    24768 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24769 cursor" 
    24770  
    24771 File
    24772 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24773 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24774 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24775 self.name) 
    24776  
    24777 See log for complete Python traceback. 
    24778  
    24779 Traceback (most recent call last): 
    24780 File
    24781 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24782 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24783 mouseMoveEvent 
    24784 self.moveSegmentationPuck(x, y, record_seg=False) 
    24785 File
    24786 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24787 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24788 moveSegmentationPuck 
    24789 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24790 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24791 File
    24792 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24793 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24794 return self.position.origin() 
    24795 ^^^^^^^^^^^^^ 
    24796 File
    24797 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24798 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24799 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24800 self.name) 
    24801 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24802 cursor" 
    24803  
    24804 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24805 cursor" 
    24806  
    24807 File
    24808 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24809 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24810 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24811 self.name) 
    24812  
    24813 See log for complete Python traceback. 
    24814  
    24815 Traceback (most recent call last): 
    24816 File
    24817 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24818 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24819 mouseMoveEvent 
    24820 self.moveSegmentationPuck(x, y, record_seg=False) 
    24821 File
    24822 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24823 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24824 moveSegmentationPuck 
    24825 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24826 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24827 File
    24828 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24829 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24830 return self.position.origin() 
    24831 ^^^^^^^^^^^^^ 
    24832 File
    24833 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24834 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24835 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24836 self.name) 
    24837 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24838 cursor" 
    24839  
    24840 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24841 cursor" 
    24842  
    24843 File
    24844 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24845 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24846 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24847 self.name) 
    24848  
    24849 See log for complete Python traceback. 
    24850  
    24851 Traceback (most recent call last): 
    24852 File
    24853 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24854 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24855 mouseMoveEvent 
    24856 self.moveSegmentationPuck(x, y, record_seg=False) 
    24857 File
    24858 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24859 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24860 moveSegmentationPuck 
    24861 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24862 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24863 File
    24864 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24865 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24866 return self.position.origin() 
    24867 ^^^^^^^^^^^^^ 
    24868 File
    24869 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24870 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24871 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24872 self.name) 
    24873 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24874 cursor" 
    24875  
    24876 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24877 cursor" 
    24878  
    24879 File
    24880 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24881 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24882 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24883 self.name) 
    24884  
    24885 See log for complete Python traceback. 
    24886  
    24887 Traceback (most recent call last): 
    24888 File
    24889 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24890 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24891 mouseMoveEvent 
    24892 self.moveSegmentationPuck(x, y, record_seg=False) 
    24893 File
    24894 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24895 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24896 moveSegmentationPuck 
    24897 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24898 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24899 File
    24900 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24901 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24902 return self.position.origin() 
    24903 ^^^^^^^^^^^^^ 
    24904 File
    24905 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24906 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24907 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24908 self.name) 
    24909 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24910 cursor" 
    24911  
    24912 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24913 cursor" 
    24914  
    24915 File
    24916 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24917 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24918 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24919 self.name) 
    24920  
    24921 See log for complete Python traceback. 
    24922  
    24923 Traceback (most recent call last): 
    24924 File
    24925 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24926 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24927 mouseMoveEvent 
    24928 self.moveSegmentationPuck(x, y, record_seg=False) 
    24929 File
    24930 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24931 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24932 moveSegmentationPuck 
    24933 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24934 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24935 File
    24936 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24937 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24938 return self.position.origin() 
    24939 ^^^^^^^^^^^^^ 
    24940 File
    24941 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24942 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24943 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24944 self.name) 
    24945 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24946 cursor" 
    24947  
    24948 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24949 cursor" 
    24950  
    24951 File
    24952 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24953 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24954 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24955 self.name) 
    24956  
    24957 See log for complete Python traceback. 
    24958  
    24959 Traceback (most recent call last): 
    24960 File
    24961 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24962 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24963 mouseMoveEvent 
    24964 self.moveSegmentationPuck(x, y, record_seg=False) 
    24965 File
    24966 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24967 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24968 moveSegmentationPuck 
    24969 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24970 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24971 File
    24972 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24973 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24974 return self.position.origin() 
    24975 ^^^^^^^^^^^^^ 
    24976 File
    24977 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24978 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24979 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24980 self.name) 
    24981 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24982 cursor" 
    24983  
    24984 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24985 cursor" 
    24986  
    24987 File
    24988 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24989 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24990 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24991 self.name) 
    24992  
    24993 See log for complete Python traceback. 
    24994  
    24995 Traceback (most recent call last): 
    24996 File
    24997 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24998 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24999 mouseMoveEvent 
    25000 self.moveSegmentationPuck(x, y, record_seg=False) 
    25001 File
    25002 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25003 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25004 moveSegmentationPuck 
    25005 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25006 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25007 File
    25008 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25009 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25010 return self.position.origin() 
    25011 ^^^^^^^^^^^^^ 
    25012 File
    25013 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25014 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25015 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25016 self.name) 
    25017 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25018 cursor" 
    25019  
    25020 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25021 cursor" 
    25022  
    25023 File
    25024 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25025 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25026 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25027 self.name) 
    25028  
    25029 See log for complete Python traceback. 
    25030  
    25031 Traceback (most recent call last): 
    25032 File
    25033 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25034 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25035 mouseMoveEvent 
    25036 self.moveSegmentationPuck(x, y, record_seg=False) 
    25037 File
    25038 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25039 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25040 moveSegmentationPuck 
    25041 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25042 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25043 File
    25044 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25045 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25046 return self.position.origin() 
    25047 ^^^^^^^^^^^^^ 
    25048 File
    25049 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25050 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25051 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25052 self.name) 
    25053 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25054 cursor" 
    25055  
    25056 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25057 cursor" 
    25058  
    25059 File
    25060 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25061 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25062 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25063 self.name) 
    25064  
    25065 See log for complete Python traceback. 
    25066  
    25067 Traceback (most recent call last): 
    25068 File
    25069 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25070 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25071 mouseMoveEvent 
    25072 self.moveSegmentationPuck(x, y, record_seg=False) 
    25073 File
    25074 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25075 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25076 moveSegmentationPuck 
    25077 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25078 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25079 File
    25080 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25081 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25082 return self.position.origin() 
    25083 ^^^^^^^^^^^^^ 
    25084 File
    25085 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25086 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25087 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25088 self.name) 
    25089 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25090 cursor" 
    25091  
    25092 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25093 cursor" 
    25094  
    25095 File
    25096 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25097 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25098 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25099 self.name) 
    25100  
    25101 See log for complete Python traceback. 
    25102  
    25103 Traceback (most recent call last): 
    25104 File
    25105 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25106 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25107 mouseMoveEvent 
    25108 self.moveSegmentationPuck(x, y, record_seg=False) 
    25109 File
    25110 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25111 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25112 moveSegmentationPuck 
    25113 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25114 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25115 File
    25116 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25117 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25118 return self.position.origin() 
    25119 ^^^^^^^^^^^^^ 
    25120 File
    25121 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25122 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25123 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25124 self.name) 
    25125 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25126 cursor" 
    25127  
    25128 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25129 cursor" 
    25130  
    25131 File
    25132 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25133 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25134 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25135 self.name) 
    25136  
    25137 See log for complete Python traceback. 
    25138  
    25139 Traceback (most recent call last): 
    25140 File
    25141 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25142 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25143 mouseMoveEvent 
    25144 self.moveSegmentationPuck(x, y, record_seg=False) 
    25145 File
    25146 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25147 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25148 moveSegmentationPuck 
    25149 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25150 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25151 File
    25152 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25153 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25154 return self.position.origin() 
    25155 ^^^^^^^^^^^^^ 
    25156 File
    25157 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25158 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25159 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25160 self.name) 
    25161 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25162 cursor" 
    25163  
    25164 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25165 cursor" 
    25166  
    25167 File
    25168 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25169 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25170 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25171 self.name) 
    25172  
    25173 See log for complete Python traceback. 
    25174  
    25175 Traceback (most recent call last): 
    25176 File
    25177 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25178 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25179 mouseMoveEvent 
    25180 self.moveSegmentationPuck(x, y, record_seg=False) 
    25181 File
    25182 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25183 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25184 moveSegmentationPuck 
    25185 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25186 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25187 File
    25188 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25189 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25190 return self.position.origin() 
    25191 ^^^^^^^^^^^^^ 
    25192 File
    25193 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25194 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25195 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25196 self.name) 
    25197 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25198 cursor" 
    25199  
    25200 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25201 cursor" 
    25202  
    25203 File
    25204 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25205 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25206 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25207 self.name) 
    25208  
    25209 See log for complete Python traceback. 
    25210  
    25211 Traceback (most recent call last): 
    25212 File
    25213 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25214 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25215 mouseMoveEvent 
    25216 self.moveSegmentationPuck(x, y, record_seg=False) 
    25217 File
    25218 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25219 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25220 moveSegmentationPuck 
    25221 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25222 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25223 File
    25224 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25225 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25226 return self.position.origin() 
    25227 ^^^^^^^^^^^^^ 
    25228 File
    25229 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25230 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25231 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25232 self.name) 
    25233 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25234 cursor" 
    25235  
    25236 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25237 cursor" 
    25238  
    25239 File
    25240 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25241 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25242 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25243 self.name) 
    25244  
    25245 See log for complete Python traceback. 
    25246  
    25247 Traceback (most recent call last): 
    25248 File
    25249 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25250 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25251 mouseMoveEvent 
    25252 self.moveSegmentationPuck(x, y, record_seg=False) 
    25253 File
    25254 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25255 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25256 moveSegmentationPuck 
    25257 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25258 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25259 File
    25260 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25261 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25262 return self.position.origin() 
    25263 ^^^^^^^^^^^^^ 
    25264 File
    25265 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25266 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25267 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25268 self.name) 
    25269 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25270 cursor" 
    25271  
    25272 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25273 cursor" 
    25274  
    25275 File
    25276 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25277 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25278 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25279 self.name) 
    25280  
    25281 See log for complete Python traceback. 
    25282  
    25283 Traceback (most recent call last): 
    25284 File
    25285 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25286 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25287 mouseMoveEvent 
    25288 self.moveSegmentationPuck(x, y, record_seg=False) 
    25289 File
    25290 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25291 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25292 moveSegmentationPuck 
    25293 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25294 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25295 File
    25296 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25297 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25298 return self.position.origin() 
    25299 ^^^^^^^^^^^^^ 
    25300 File
    25301 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25302 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25303 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25304 self.name) 
    25305 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25306 cursor" 
    25307  
    25308 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25309 cursor" 
    25310  
    25311 File
    25312 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25313 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25314 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25315 self.name) 
    25316  
    25317 See log for complete Python traceback. 
    25318  
    25319 Traceback (most recent call last): 
    25320 File
    25321 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25322 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25323 mouseMoveEvent 
    25324 self.moveSegmentationPuck(x, y, record_seg=False) 
    25325 File
    25326 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25327 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25328 moveSegmentationPuck 
    25329 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25330 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25331 File
    25332 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25333 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25334 return self.position.origin() 
    25335 ^^^^^^^^^^^^^ 
    25336 File
    25337 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25338 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25339 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25340 self.name) 
    25341 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25342 cursor" 
    25343  
    25344 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25345 cursor" 
    25346  
    25347 File
    25348 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25349 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25350 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25351 self.name) 
    25352  
    25353 See log for complete Python traceback. 
    25354  
    25355 Traceback (most recent call last): 
    25356 File
    25357 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25358 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25359 mouseMoveEvent 
    25360 self.moveSegmentationPuck(x, y, record_seg=False) 
    25361 File
    25362 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25363 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25364 moveSegmentationPuck 
    25365 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25366 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25367 File
    25368 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25369 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25370 return self.position.origin() 
    25371 ^^^^^^^^^^^^^ 
    25372 File
    25373 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25374 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25375 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25376 self.name) 
    25377 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25378 cursor" 
    25379  
    25380 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25381 cursor" 
    25382  
    25383 File
    25384 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25385 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25386 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25387 self.name) 
    25388  
    25389 See log for complete Python traceback. 
    25390  
    25391 Traceback (most recent call last): 
    25392 File
    25393 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25394 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25395 mouseMoveEvent 
    25396 self.moveSegmentationPuck(x, y, record_seg=False) 
    25397 File
    25398 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25399 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25400 moveSegmentationPuck 
    25401 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25402 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25403 File
    25404 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25405 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25406 return self.position.origin() 
    25407 ^^^^^^^^^^^^^ 
    25408 File
    25409 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25410 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25411 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25412 self.name) 
    25413 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25414 cursor" 
    25415  
    25416 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25417 cursor" 
    25418  
    25419 File
    25420 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25421 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25422 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25423 self.name) 
    25424  
    25425 See log for complete Python traceback. 
    25426  
    25427 Traceback (most recent call last): 
    25428 File
    25429 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25430 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25431 mouseMoveEvent 
    25432 self.moveSegmentationPuck(x, y, record_seg=False) 
    25433 File
    25434 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25435 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25436 moveSegmentationPuck 
    25437 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25438 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25439 File
    25440 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25441 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25442 return self.position.origin() 
    25443 ^^^^^^^^^^^^^ 
    25444 File
    25445 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25446 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25447 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25448 self.name) 
    25449 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25450 cursor" 
    25451  
    25452 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25453 cursor" 
    25454  
    25455 File
    25456 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25457 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25458 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25459 self.name) 
    25460  
    25461 See log for complete Python traceback. 
    25462  
    25463 Traceback (most recent call last): 
    25464 File
    25465 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25466 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25467 mouseMoveEvent 
    25468 self.moveSegmentationPuck(x, y, record_seg=False) 
    25469 File
    25470 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25471 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25472 moveSegmentationPuck 
    25473 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25474 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25475 File
    25476 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25477 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25478 return self.position.origin() 
    25479 ^^^^^^^^^^^^^ 
    25480 File
    25481 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25482 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25483 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25484 self.name) 
    25485 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25486 cursor" 
    25487  
    25488 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25489 cursor" 
    25490  
    25491 File
    25492 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25493 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25494 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25495 self.name) 
    25496  
    25497 See log for complete Python traceback. 
    25498  
    25499 Traceback (most recent call last): 
    25500 File
    25501 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25502 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25503 mouseMoveEvent 
    25504 self.moveSegmentationPuck(x, y, record_seg=False) 
    25505 File
    25506 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25507 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25508 moveSegmentationPuck 
    25509 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25510 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25511 File
    25512 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25513 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25514 return self.position.origin() 
    25515 ^^^^^^^^^^^^^ 
    25516 File
    25517 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25518 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25519 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25520 self.name) 
    25521 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25522 cursor" 
    25523  
    25524 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25525 cursor" 
    25526  
    25527 File
    25528 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25529 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25530 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25531 self.name) 
    25532  
    25533 See log for complete Python traceback. 
    25534  
    25535 Traceback (most recent call last): 
    25536 File
    25537 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25538 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25539 mouseMoveEvent 
    25540 self.moveSegmentationPuck(x, y, record_seg=False) 
    25541 File
    25542 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25543 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25544 moveSegmentationPuck 
    25545 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25546 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25547 File
    25548 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25549 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25550 return self.position.origin() 
    25551 ^^^^^^^^^^^^^ 
    25552 File
    25553 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25554 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25555 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25556 self.name) 
    25557 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25558 cursor" 
    25559  
    25560 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25561 cursor" 
    25562  
    25563 File
    25564 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25565 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25566 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25567 self.name) 
    25568  
    25569 See log for complete Python traceback. 
    25570  
    25571 Traceback (most recent call last): 
    25572 File
    25573 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25574 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25575 mouseMoveEvent 
    25576 self.moveSegmentationPuck(x, y, record_seg=False) 
    25577 File
    25578 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25579 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25580 moveSegmentationPuck 
    25581 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25582 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25583 File
    25584 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25585 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25586 return self.position.origin() 
    25587 ^^^^^^^^^^^^^ 
    25588 File
    25589 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25590 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25591 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25592 self.name) 
    25593 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25594 cursor" 
    25595  
    25596 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25597 cursor" 
    25598  
    25599 File
    25600 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25601 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25602 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25603 self.name) 
    25604  
    25605 See log for complete Python traceback. 
    25606  
    25607 Traceback (most recent call last): 
    25608 File
    25609 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25610 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25611 mouseMoveEvent 
    25612 self.moveSegmentationPuck(x, y, record_seg=False) 
    25613 File
    25614 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25615 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25616 moveSegmentationPuck 
    25617 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25618 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25619 File
    25620 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25621 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25622 return self.position.origin() 
    25623 ^^^^^^^^^^^^^ 
    25624 File
    25625 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25626 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25627 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25628 self.name) 
    25629 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25630 cursor" 
    25631  
    25632 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25633 cursor" 
    25634  
    25635 File
    25636 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25637 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25638 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25639 self.name) 
    25640  
    25641 See log for complete Python traceback. 
    25642  
    25643 Traceback (most recent call last): 
    25644 File
    25645 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25646 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25647 mouseMoveEvent 
    25648 self.moveSegmentationPuck(x, y, record_seg=False) 
    25649 File
    25650 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25651 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25652 moveSegmentationPuck 
    25653 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25654 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25655 File
    25656 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25657 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25658 return self.position.origin() 
    25659 ^^^^^^^^^^^^^ 
    25660 File
    25661 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25662 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25663 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25664 self.name) 
    25665 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25666 cursor" 
    25667  
    25668 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25669 cursor" 
    25670  
    25671 File
    25672 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25673 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25674 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25675 self.name) 
    25676  
    25677 See log for complete Python traceback. 
    25678  
    25679 Traceback (most recent call last): 
    25680 File
    25681 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25682 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25683 mouseMoveEvent 
    25684 self.moveSegmentationPuck(x, y, record_seg=False) 
    25685 File
    25686 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25687 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25688 moveSegmentationPuck 
    25689 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25690 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25691 File
    25692 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25693 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25694 return self.position.origin() 
    25695 ^^^^^^^^^^^^^ 
    25696 File
    25697 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25698 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25699 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25700 self.name) 
    25701 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25702 cursor" 
    25703  
    25704 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25705 cursor" 
    25706  
    25707 File
    25708 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25709 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25710 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25711 self.name) 
    25712  
    25713 See log for complete Python traceback. 
    25714  
    25715 Traceback (most recent call last): 
    25716 File
    25717 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25718 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25719 mouseMoveEvent 
    25720 self.moveSegmentationPuck(x, y, record_seg=False) 
    25721 File
    25722 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25723 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25724 moveSegmentationPuck 
    25725 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25726 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25727 File
    25728 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25729 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25730 return self.position.origin() 
    25731 ^^^^^^^^^^^^^ 
    25732 File
    25733 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25734 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25735 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25736 self.name) 
    25737 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25738 cursor" 
    25739  
    25740 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25741 cursor" 
    25742  
    25743 File
    25744 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25745 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25746 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25747 self.name) 
    25748  
    25749 See log for complete Python traceback. 
    25750  
    25751 Traceback (most recent call last): 
    25752 File
    25753 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25754 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25755 mouseMoveEvent 
    25756 self.moveSegmentationPuck(x, y, record_seg=False) 
    25757 File
    25758 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25759 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25760 moveSegmentationPuck 
    25761 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25762 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25763 File
    25764 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25765 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25766 return self.position.origin() 
    25767 ^^^^^^^^^^^^^ 
    25768 File
    25769 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25770 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25771 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25772 self.name) 
    25773 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25774 cursor" 
    25775  
    25776 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    25777 cursor" 
    25778  
    25779 File
    25780 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25781 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25782 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25783 self.name) 
    25784  
    25785 See log for complete Python traceback. 
    25786  
    25787 Traceback (most recent call last): 
    25788 File
    25789 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25790 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    25791 self.leaveEvent() 
    25792 File
    25793 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25794 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    25795 self.segmentation_tool.make_puck_invisible(self.axis) 
    25796 File
    25797 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25798 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    25799 make_puck_invisible 
    25800 self.segmentation_cursors[axis].display = False 
    25801 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25802 File
    25803 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25804 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    25805 super(Drawing, self).__setattr__(key, value) 
    25806 File
    25807 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25808 packages/chimerax/core/models.py", line 345, in _set_display 
    25809 Drawing.set_display(self, display) 
    25810 File
    25811 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25812 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    25813 dp = self.display_positions 
    25814 ^^^^^^^^^^^^^^^^^^^^^^ 
    25815 File
    25816 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25817 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    25818 dp = ones((len(self._positions),), bool) 
    25819 ^^^^^^^^^^^^^^^^^^^^ 
    25820 TypeError: object of type 'NoneType' has no len() 
    25821  
    25822 TypeError: object of type 'NoneType' has no len() 
    25823  
    25824 File
    25825 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25826 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    25827 dp = ones((len(self._positions),), bool) 
    25828 ^^^^^^^^^^^^^^^^^^^^ 
    25829  
    25830 See log for complete Python traceback. 
    25831  
    25832 Traceback (most recent call last): 
    25833 File
    25834 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25835 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    25836 self.enterEvent() 
    25837 File
    25838 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25839 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    25840 self.segmentation_tool.make_puck_visible(self.axis) 
    25841 File
    25842 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25843 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    25844 make_puck_visible 
    25845 self.segmentation_cursors[axis].display = True 
    25846 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25847 File
    25848 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25849 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    25850 super(Drawing, self).__setattr__(key, value) 
    25851 File
    25852 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25853 packages/chimerax/core/models.py", line 345, in _set_display 
    25854 Drawing.set_display(self, display) 
    25855 File
    25856 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25857 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    25858 dp = self.display_positions 
    25859 ^^^^^^^^^^^^^^^^^^^^^^ 
    25860 File
    25861 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25862 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    25863 dp = ones((len(self._positions),), bool) 
    25864 ^^^^^^^^^^^^^^^^^^^^ 
    25865 TypeError: object of type 'NoneType' has no len() 
    25866  
    25867 TypeError: object of type 'NoneType' has no len() 
    25868  
    25869 File
    25870 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25871 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    25872 dp = ones((len(self._positions),), bool) 
    25873 ^^^^^^^^^^^^^^^^^^^^ 
    25874  
    25875 See log for complete Python traceback. 
    25876  
    25877 Traceback (most recent call last): 
    25878 File
    25879 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25880 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25881 mouseMoveEvent 
    25882 self.moveSegmentationPuck(x, y, record_seg=False) 
    25883 File
    25884 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25885 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25886 moveSegmentationPuck 
    25887 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25888 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25889 File
    25890 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25891 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25892 return self.position.origin() 
    25893 ^^^^^^^^^^^^^ 
    25894 File
    25895 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25896 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25897 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25898 self.name) 
    25899 RuntimeError: Tried to get the position of deleted drawing "sagittal
    25900 segmentation cursor" 
    25901  
    25902 RuntimeError: Tried to get the position of deleted drawing "sagittal
    25903 segmentation cursor" 
    25904  
    25905 File
    25906 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25907 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25908 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25909 self.name) 
    25910  
    25911 See log for complete Python traceback. 
    25912  
    25913 Traceback (most recent call last): 
    25914 File
    25915 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25916 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25917 mouseMoveEvent 
    25918 self.moveSegmentationPuck(x, y, record_seg=False) 
    25919 File
    25920 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25921 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25922 moveSegmentationPuck 
    25923 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25924 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25925 File
    25926 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25927 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25928 return self.position.origin() 
    25929 ^^^^^^^^^^^^^ 
    25930 File
    25931 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25932 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25933 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25934 self.name) 
    25935 RuntimeError: Tried to get the position of deleted drawing "sagittal
    25936 segmentation cursor" 
    25937  
    25938 RuntimeError: Tried to get the position of deleted drawing "sagittal
    25939 segmentation cursor" 
    25940  
    25941 File
    25942 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25943 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25944 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25945 self.name) 
    25946  
    25947 See log for complete Python traceback. 
    25948  
    25949 Traceback (most recent call last): 
    25950 File
    25951 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25952 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25953 mouseMoveEvent 
    25954 self.moveSegmentationPuck(x, y, record_seg=False) 
    25955 File
    25956 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25957 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25958 moveSegmentationPuck 
    25959 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25960 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25961 File
    25962 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25963 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    25964 return self.position.origin() 
    25965 ^^^^^^^^^^^^^ 
    25966 File
    25967 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25968 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25969 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25970 self.name) 
    25971 RuntimeError: Tried to get the position of deleted drawing "sagittal
    25972 segmentation cursor" 
    25973  
    25974 RuntimeError: Tried to get the position of deleted drawing "sagittal
    25975 segmentation cursor" 
    25976  
    25977 File
    25978 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25979 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    25980 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    25981 self.name) 
    25982  
    25983 See log for complete Python traceback. 
    25984  
    25985 Traceback (most recent call last): 
    25986 File
    25987 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25988 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    25989 mouseMoveEvent 
    25990 self.moveSegmentationPuck(x, y, record_seg=False) 
    25991 File
    25992 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25993 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    25994 moveSegmentationPuck 
    25995 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    25996 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    25997 File
    25998 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    25999 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26000 return self.position.origin() 
    26001 ^^^^^^^^^^^^^ 
    26002 File
    26003 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26004 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26005 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26006 self.name) 
    26007 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26008 segmentation cursor" 
    26009  
    26010 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26011 segmentation cursor" 
    26012  
    26013 File
    26014 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26015 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26016 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26017 self.name) 
    26018  
    26019 See log for complete Python traceback. 
    26020  
    26021 Traceback (most recent call last): 
    26022 File
    26023 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26024 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26025 mouseMoveEvent 
    26026 self.moveSegmentationPuck(x, y, record_seg=False) 
    26027 File
    26028 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26029 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26030 moveSegmentationPuck 
    26031 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26032 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26033 File
    26034 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26035 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26036 return self.position.origin() 
    26037 ^^^^^^^^^^^^^ 
    26038 File
    26039 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26040 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26041 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26042 self.name) 
    26043 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26044 segmentation cursor" 
    26045  
    26046 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26047 segmentation cursor" 
    26048  
    26049 File
    26050 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26051 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26052 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26053 self.name) 
    26054  
    26055 See log for complete Python traceback. 
    26056  
    26057 Traceback (most recent call last): 
    26058 File
    26059 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26060 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26061 mouseMoveEvent 
    26062 self.moveSegmentationPuck(x, y, record_seg=False) 
    26063 File
    26064 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26065 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26066 moveSegmentationPuck 
    26067 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26068 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26069 File
    26070 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26071 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26072 return self.position.origin() 
    26073 ^^^^^^^^^^^^^ 
    26074 File
    26075 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26076 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26077 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26078 self.name) 
    26079 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26080 segmentation cursor" 
    26081  
    26082 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26083 segmentation cursor" 
    26084  
    26085 File
    26086 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26087 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26088 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26089 self.name) 
    26090  
    26091 See log for complete Python traceback. 
    26092  
    26093 Traceback (most recent call last): 
    26094 File
    26095 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26096 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26097 mouseMoveEvent 
    26098 self.moveSegmentationPuck(x, y, record_seg=False) 
    26099 File
    26100 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26101 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26102 moveSegmentationPuck 
    26103 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26104 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26105 File
    26106 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26107 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26108 return self.position.origin() 
    26109 ^^^^^^^^^^^^^ 
    26110 File
    26111 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26112 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26113 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26114 self.name) 
    26115 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26116 segmentation cursor" 
    26117  
    26118 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26119 segmentation cursor" 
    26120  
    26121 File
    26122 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26123 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26124 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26125 self.name) 
    26126  
    26127 See log for complete Python traceback. 
    26128  
    26129 Traceback (most recent call last): 
    26130 File
    26131 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26132 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26133 mouseMoveEvent 
    26134 self.moveSegmentationPuck(x, y, record_seg=False) 
    26135 File
    26136 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26137 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26138 moveSegmentationPuck 
    26139 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26140 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26141 File
    26142 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26143 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26144 return self.position.origin() 
    26145 ^^^^^^^^^^^^^ 
    26146 File
    26147 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26148 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26149 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26150 self.name) 
    26151 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26152 segmentation cursor" 
    26153  
    26154 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26155 segmentation cursor" 
    26156  
    26157 File
    26158 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26159 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26160 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26161 self.name) 
    26162  
    26163 See log for complete Python traceback. 
    26164  
    26165 Traceback (most recent call last): 
    26166 File
    26167 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26168 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26169 mouseMoveEvent 
    26170 self.moveSegmentationPuck(x, y, record_seg=False) 
    26171 File
    26172 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26173 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26174 moveSegmentationPuck 
    26175 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26176 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26177 File
    26178 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26179 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26180 return self.position.origin() 
    26181 ^^^^^^^^^^^^^ 
    26182 File
    26183 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26184 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26185 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26186 self.name) 
    26187 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26188 segmentation cursor" 
    26189  
    26190 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26191 segmentation cursor" 
    26192  
    26193 File
    26194 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26195 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26196 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26197 self.name) 
    26198  
    26199 See log for complete Python traceback. 
    26200  
    26201 Traceback (most recent call last): 
    26202 File
    26203 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26204 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26205 mouseMoveEvent 
    26206 self.moveSegmentationPuck(x, y, record_seg=False) 
    26207 File
    26208 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26209 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26210 moveSegmentationPuck 
    26211 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26212 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26213 File
    26214 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26215 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26216 return self.position.origin() 
    26217 ^^^^^^^^^^^^^ 
    26218 File
    26219 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26220 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26221 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26222 self.name) 
    26223 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26224 segmentation cursor" 
    26225  
    26226 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26227 segmentation cursor" 
    26228  
    26229 File
    26230 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26231 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26232 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26233 self.name) 
    26234  
    26235 See log for complete Python traceback. 
    26236  
    26237 Traceback (most recent call last): 
    26238 File
    26239 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26240 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26241 mouseMoveEvent 
    26242 self.moveSegmentationPuck(x, y, record_seg=False) 
    26243 File
    26244 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26245 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26246 moveSegmentationPuck 
    26247 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26248 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26249 File
    26250 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26251 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26252 return self.position.origin() 
    26253 ^^^^^^^^^^^^^ 
    26254 File
    26255 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26256 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26257 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26258 self.name) 
    26259 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26260 segmentation cursor" 
    26261  
    26262 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26263 segmentation cursor" 
    26264  
    26265 File
    26266 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26267 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26268 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26269 self.name) 
    26270  
    26271 See log for complete Python traceback. 
    26272  
    26273 Traceback (most recent call last): 
    26274 File
    26275 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26276 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26277 mouseMoveEvent 
    26278 self.moveSegmentationPuck(x, y, record_seg=False) 
    26279 File
    26280 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26281 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26282 moveSegmentationPuck 
    26283 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26284 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26285 File
    26286 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26287 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26288 return self.position.origin() 
    26289 ^^^^^^^^^^^^^ 
    26290 File
    26291 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26292 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26293 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26294 self.name) 
    26295 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26296 segmentation cursor" 
    26297  
    26298 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26299 segmentation cursor" 
    26300  
    26301 File
    26302 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26303 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26304 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26305 self.name) 
    26306  
    26307 See log for complete Python traceback. 
    26308  
    26309 Traceback (most recent call last): 
    26310 File
    26311 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26312 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26313 mouseMoveEvent 
    26314 self.moveSegmentationPuck(x, y, record_seg=False) 
    26315 File
    26316 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26317 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26318 moveSegmentationPuck 
    26319 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26320 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26321 File
    26322 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26323 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26324 return self.position.origin() 
    26325 ^^^^^^^^^^^^^ 
    26326 File
    26327 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26328 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26329 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26330 self.name) 
    26331 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26332 segmentation cursor" 
    26333  
    26334 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26335 segmentation cursor" 
    26336  
    26337 File
    26338 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26339 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26340 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26341 self.name) 
    26342  
    26343 See log for complete Python traceback. 
    26344  
    26345 Traceback (most recent call last): 
    26346 File
    26347 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26348 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26349 mouseMoveEvent 
    26350 self.moveSegmentationPuck(x, y, record_seg=False) 
    26351 File
    26352 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26353 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26354 moveSegmentationPuck 
    26355 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26356 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26357 File
    26358 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26359 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26360 return self.position.origin() 
    26361 ^^^^^^^^^^^^^ 
    26362 File
    26363 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26364 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26365 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26366 self.name) 
    26367 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26368 segmentation cursor" 
    26369  
    26370 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26371 segmentation cursor" 
    26372  
    26373 File
    26374 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26375 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26376 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26377 self.name) 
    26378  
    26379 See log for complete Python traceback. 
    26380  
    26381 Traceback (most recent call last): 
    26382 File
    26383 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26384 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26385 mouseMoveEvent 
    26386 self.moveSegmentationPuck(x, y, record_seg=False) 
    26387 File
    26388 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26389 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26390 moveSegmentationPuck 
    26391 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26392 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26393 File
    26394 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26395 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26396 return self.position.origin() 
    26397 ^^^^^^^^^^^^^ 
    26398 File
    26399 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26400 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26401 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26402 self.name) 
    26403 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26404 segmentation cursor" 
    26405  
    26406 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26407 segmentation cursor" 
    26408  
    26409 File
    26410 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26411 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26412 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26413 self.name) 
    26414  
    26415 See log for complete Python traceback. 
    26416  
    26417 Traceback (most recent call last): 
    26418 File
    26419 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26420 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26421 mouseMoveEvent 
    26422 self.moveSegmentationPuck(x, y, record_seg=False) 
    26423 File
    26424 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26425 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26426 moveSegmentationPuck 
    26427 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26428 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26429 File
    26430 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26431 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26432 return self.position.origin() 
    26433 ^^^^^^^^^^^^^ 
    26434 File
    26435 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26436 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26437 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26438 self.name) 
    26439 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26440 segmentation cursor" 
    26441  
    26442 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26443 segmentation cursor" 
    26444  
    26445 File
    26446 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26447 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26448 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26449 self.name) 
    26450  
    26451 See log for complete Python traceback. 
    26452  
    26453 Traceback (most recent call last): 
    26454 File
    26455 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26456 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26457 mouseMoveEvent 
    26458 self.moveSegmentationPuck(x, y, record_seg=False) 
    26459 File
    26460 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26461 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26462 moveSegmentationPuck 
    26463 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26464 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26465 File
    26466 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26467 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26468 return self.position.origin() 
    26469 ^^^^^^^^^^^^^ 
    26470 File
    26471 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26472 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26473 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26474 self.name) 
    26475 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26476 segmentation cursor" 
    26477  
    26478 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26479 segmentation cursor" 
    26480  
    26481 File
    26482 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26483 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26484 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26485 self.name) 
    26486  
    26487 See log for complete Python traceback. 
    26488  
    26489 Traceback (most recent call last): 
    26490 File
    26491 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26492 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26493 mouseMoveEvent 
    26494 self.moveSegmentationPuck(x, y, record_seg=False) 
    26495 File
    26496 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26497 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26498 moveSegmentationPuck 
    26499 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26500 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26501 File
    26502 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26503 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26504 return self.position.origin() 
    26505 ^^^^^^^^^^^^^ 
    26506 File
    26507 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26508 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26509 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26510 self.name) 
    26511 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26512 segmentation cursor" 
    26513  
    26514 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26515 segmentation cursor" 
    26516  
    26517 File
    26518 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26519 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26520 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26521 self.name) 
    26522  
    26523 See log for complete Python traceback. 
    26524  
    26525 Traceback (most recent call last): 
    26526 File
    26527 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26528 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26529 mouseMoveEvent 
    26530 self.moveSegmentationPuck(x, y, record_seg=False) 
    26531 File
    26532 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26533 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26534 moveSegmentationPuck 
    26535 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26536 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26537 File
    26538 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26539 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26540 return self.position.origin() 
    26541 ^^^^^^^^^^^^^ 
    26542 File
    26543 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26544 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26545 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26546 self.name) 
    26547 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26548 segmentation cursor" 
    26549  
    26550 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26551 segmentation cursor" 
    26552  
    26553 File
    26554 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26555 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26556 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26557 self.name) 
    26558  
    26559 See log for complete Python traceback. 
    26560  
    26561 Traceback (most recent call last): 
    26562 File
    26563 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26564 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26565 mouseMoveEvent 
    26566 self.moveSegmentationPuck(x, y, record_seg=False) 
    26567 File
    26568 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26569 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26570 moveSegmentationPuck 
    26571 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26572 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26573 File
    26574 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26575 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26576 return self.position.origin() 
    26577 ^^^^^^^^^^^^^ 
    26578 File
    26579 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26580 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26581 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26582 self.name) 
    26583 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26584 segmentation cursor" 
    26585  
    26586 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26587 segmentation cursor" 
    26588  
    26589 File
    26590 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26591 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26592 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26593 self.name) 
    26594  
    26595 See log for complete Python traceback. 
    26596  
    26597 Traceback (most recent call last): 
    26598 File
    26599 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26600 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26601 mouseMoveEvent 
    26602 self.moveSegmentationPuck(x, y, record_seg=False) 
    26603 File
    26604 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26605 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26606 moveSegmentationPuck 
    26607 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26608 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26609 File
    26610 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26611 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26612 return self.position.origin() 
    26613 ^^^^^^^^^^^^^ 
    26614 File
    26615 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26616 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26617 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26618 self.name) 
    26619 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26620 segmentation cursor" 
    26621  
    26622 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26623 segmentation cursor" 
    26624  
    26625 File
    26626 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26627 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26628 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26629 self.name) 
    26630  
    26631 See log for complete Python traceback. 
    26632  
    26633 Traceback (most recent call last): 
    26634 File
    26635 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26636 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26637 mouseMoveEvent 
    26638 self.moveSegmentationPuck(x, y, record_seg=False) 
    26639 File
    26640 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26641 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26642 moveSegmentationPuck 
    26643 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26644 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26645 File
    26646 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26647 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26648 return self.position.origin() 
    26649 ^^^^^^^^^^^^^ 
    26650 File
    26651 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26652 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26653 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26654 self.name) 
    26655 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26656 segmentation cursor" 
    26657  
    26658 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26659 segmentation cursor" 
    26660  
    26661 File
    26662 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26663 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26664 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26665 self.name) 
    26666  
    26667 See log for complete Python traceback. 
    26668  
    26669 Traceback (most recent call last): 
    26670 File
    26671 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26672 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26673 mouseMoveEvent 
    26674 self.moveSegmentationPuck(x, y, record_seg=False) 
    26675 File
    26676 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26677 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26678 moveSegmentationPuck 
    26679 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26680 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26681 File
    26682 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26683 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26684 return self.position.origin() 
    26685 ^^^^^^^^^^^^^ 
    26686 File
    26687 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26688 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26689 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26690 self.name) 
    26691 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26692 segmentation cursor" 
    26693  
    26694 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26695 segmentation cursor" 
    26696  
    26697 File
    26698 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26699 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26700 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26701 self.name) 
    26702  
    26703 See log for complete Python traceback. 
    26704  
    26705 Traceback (most recent call last): 
    26706 File
    26707 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26708 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26709 mouseMoveEvent 
    26710 self.moveSegmentationPuck(x, y, record_seg=False) 
    26711 File
    26712 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26713 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26714 moveSegmentationPuck 
    26715 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26716 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26717 File
    26718 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26719 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26720 return self.position.origin() 
    26721 ^^^^^^^^^^^^^ 
    26722 File
    26723 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26724 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26725 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26726 self.name) 
    26727 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26728 segmentation cursor" 
    26729  
    26730 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26731 segmentation cursor" 
    26732  
    26733 File
    26734 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26735 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26736 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26737 self.name) 
    26738  
    26739 See log for complete Python traceback. 
    26740  
    26741 Traceback (most recent call last): 
    26742 File
    26743 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26744 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26745 mouseMoveEvent 
    26746 self.moveSegmentationPuck(x, y, record_seg=False) 
    26747 File
    26748 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26749 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26750 moveSegmentationPuck 
    26751 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26752 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26753 File
    26754 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26755 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26756 return self.position.origin() 
    26757 ^^^^^^^^^^^^^ 
    26758 File
    26759 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26760 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26761 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26762 self.name) 
    26763 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26764 segmentation cursor" 
    26765  
    26766 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26767 segmentation cursor" 
    26768  
    26769 File
    26770 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26771 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26772 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26773 self.name) 
    26774  
    26775 See log for complete Python traceback. 
    26776  
    26777 Traceback (most recent call last): 
    26778 File
    26779 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26780 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26781 mouseMoveEvent 
    26782 self.moveSegmentationPuck(x, y, record_seg=False) 
    26783 File
    26784 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26785 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26786 moveSegmentationPuck 
    26787 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26788 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26789 File
    26790 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26791 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26792 return self.position.origin() 
    26793 ^^^^^^^^^^^^^ 
    26794 File
    26795 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26796 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26797 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26798 self.name) 
    26799 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26800 segmentation cursor" 
    26801  
    26802 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26803 segmentation cursor" 
    26804  
    26805 File
    26806 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26807 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26808 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26809 self.name) 
    26810  
    26811 See log for complete Python traceback. 
    26812  
    26813 Traceback (most recent call last): 
    26814 File
    26815 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26816 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26817 mouseMoveEvent 
    26818 self.moveSegmentationPuck(x, y, record_seg=False) 
    26819 File
    26820 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26821 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26822 moveSegmentationPuck 
    26823 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26824 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26825 File
    26826 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26827 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26828 return self.position.origin() 
    26829 ^^^^^^^^^^^^^ 
    26830 File
    26831 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26832 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26833 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26834 self.name) 
    26835 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26836 segmentation cursor" 
    26837  
    26838 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26839 segmentation cursor" 
    26840  
    26841 File
    26842 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26843 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26844 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26845 self.name) 
    26846  
    26847 See log for complete Python traceback. 
    26848  
    26849 Traceback (most recent call last): 
    26850 File
    26851 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26852 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26853 mouseMoveEvent 
    26854 self.moveSegmentationPuck(x, y, record_seg=False) 
    26855 File
    26856 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26857 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26858 moveSegmentationPuck 
    26859 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26860 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26861 File
    26862 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26863 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26864 return self.position.origin() 
    26865 ^^^^^^^^^^^^^ 
    26866 File
    26867 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26868 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26869 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26870 self.name) 
    26871 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26872 segmentation cursor" 
    26873  
    26874 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26875 segmentation cursor" 
    26876  
    26877 File
    26878 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26879 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26880 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26881 self.name) 
    26882  
    26883 See log for complete Python traceback. 
    26884  
    26885 Traceback (most recent call last): 
    26886 File
    26887 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26888 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26889 mouseMoveEvent 
    26890 self.moveSegmentationPuck(x, y, record_seg=False) 
    26891 File
    26892 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26893 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26894 moveSegmentationPuck 
    26895 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26896 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26897 File
    26898 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26899 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26900 return self.position.origin() 
    26901 ^^^^^^^^^^^^^ 
    26902 File
    26903 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26904 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26905 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26906 self.name) 
    26907 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26908 segmentation cursor" 
    26909  
    26910 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26911 segmentation cursor" 
    26912  
    26913 File
    26914 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26915 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26916 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26917 self.name) 
    26918  
    26919 See log for complete Python traceback. 
    26920  
    26921 Traceback (most recent call last): 
    26922 File
    26923 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26924 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26925 mouseMoveEvent 
    26926 self.moveSegmentationPuck(x, y, record_seg=False) 
    26927 File
    26928 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26929 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26930 moveSegmentationPuck 
    26931 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26932 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26933 File
    26934 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26935 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26936 return self.position.origin() 
    26937 ^^^^^^^^^^^^^ 
    26938 File
    26939 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26940 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26941 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26942 self.name) 
    26943 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26944 segmentation cursor" 
    26945  
    26946 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26947 segmentation cursor" 
    26948  
    26949 File
    26950 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26951 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26952 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26953 self.name) 
    26954  
    26955 See log for complete Python traceback. 
    26956  
    26957 Traceback (most recent call last): 
    26958 File
    26959 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26960 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26961 mouseMoveEvent 
    26962 self.moveSegmentationPuck(x, y, record_seg=False) 
    26963 File
    26964 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26965 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    26966 moveSegmentationPuck 
    26967 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    26968 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    26969 File
    26970 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26971 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    26972 return self.position.origin() 
    26973 ^^^^^^^^^^^^^ 
    26974 File
    26975 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26976 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26977 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26978 self.name) 
    26979 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26980 segmentation cursor" 
    26981  
    26982 RuntimeError: Tried to get the position of deleted drawing "sagittal
    26983 segmentation cursor" 
    26984  
    26985 File
    26986 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26987 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    26988 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    26989 self.name) 
    26990  
    26991 See log for complete Python traceback. 
    26992  
    26993 Traceback (most recent call last): 
    26994 File
    26995 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    26996 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    26997 mouseMoveEvent 
    26998 self.moveSegmentationPuck(x, y, record_seg=False) 
    26999 File
    27000 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27001 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27002 moveSegmentationPuck 
    27003 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27004 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27005 File
    27006 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27007 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27008 return self.position.origin() 
    27009 ^^^^^^^^^^^^^ 
    27010 File
    27011 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27012 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27013 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27014 self.name) 
    27015 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27016 segmentation cursor" 
    27017  
    27018 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27019 segmentation cursor" 
    27020  
    27021 File
    27022 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27023 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27024 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27025 self.name) 
    27026  
    27027 See log for complete Python traceback. 
    27028  
    27029 Traceback (most recent call last): 
    27030 File
    27031 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27032 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27033 mouseMoveEvent 
    27034 self.moveSegmentationPuck(x, y, record_seg=False) 
    27035 File
    27036 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27037 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27038 moveSegmentationPuck 
    27039 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27040 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27041 File
    27042 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27043 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27044 return self.position.origin() 
    27045 ^^^^^^^^^^^^^ 
    27046 File
    27047 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27048 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27049 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27050 self.name) 
    27051 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27052 segmentation cursor" 
    27053  
    27054 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27055 segmentation cursor" 
    27056  
    27057 File
    27058 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27059 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27060 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27061 self.name) 
    27062  
    27063 See log for complete Python traceback. 
    27064  
    27065 Traceback (most recent call last): 
    27066 File
    27067 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27068 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27069 mouseMoveEvent 
    27070 self.moveSegmentationPuck(x, y, record_seg=False) 
    27071 File
    27072 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27073 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27074 moveSegmentationPuck 
    27075 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27076 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27077 File
    27078 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27079 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27080 return self.position.origin() 
    27081 ^^^^^^^^^^^^^ 
    27082 File
    27083 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27084 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27085 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27086 self.name) 
    27087 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27088 segmentation cursor" 
    27089  
    27090 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27091 segmentation cursor" 
    27092  
    27093 File
    27094 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27095 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27096 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27097 self.name) 
    27098  
    27099 See log for complete Python traceback. 
    27100  
    27101 Traceback (most recent call last): 
    27102 File
    27103 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27104 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27105 mouseMoveEvent 
    27106 self.moveSegmentationPuck(x, y, record_seg=False) 
    27107 File
    27108 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27109 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27110 moveSegmentationPuck 
    27111 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27112 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27113 File
    27114 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27115 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27116 return self.position.origin() 
    27117 ^^^^^^^^^^^^^ 
    27118 File
    27119 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27120 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27121 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27122 self.name) 
    27123 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27124 segmentation cursor" 
    27125  
    27126 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27127 segmentation cursor" 
    27128  
    27129 File
    27130 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27131 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27132 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27133 self.name) 
    27134  
    27135 See log for complete Python traceback. 
    27136  
    27137 Traceback (most recent call last): 
    27138 File
    27139 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27140 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27141 mouseMoveEvent 
    27142 self.moveSegmentationPuck(x, y, record_seg=False) 
    27143 File
    27144 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27145 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27146 moveSegmentationPuck 
    27147 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27148 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27149 File
    27150 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27151 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27152 return self.position.origin() 
    27153 ^^^^^^^^^^^^^ 
    27154 File
    27155 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27156 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27157 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27158 self.name) 
    27159 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27160 segmentation cursor" 
    27161  
    27162 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27163 segmentation cursor" 
    27164  
    27165 File
    27166 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27167 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27168 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27169 self.name) 
    27170  
    27171 See log for complete Python traceback. 
    27172  
    27173 Traceback (most recent call last): 
    27174 File
    27175 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27176 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27177 mouseMoveEvent 
    27178 self.moveSegmentationPuck(x, y, record_seg=False) 
    27179 File
    27180 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27181 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27182 moveSegmentationPuck 
    27183 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27184 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27185 File
    27186 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27187 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27188 return self.position.origin() 
    27189 ^^^^^^^^^^^^^ 
    27190 File
    27191 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27192 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27193 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27194 self.name) 
    27195 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27196 segmentation cursor" 
    27197  
    27198 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27199 segmentation cursor" 
    27200  
    27201 File
    27202 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27203 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27204 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27205 self.name) 
    27206  
    27207 See log for complete Python traceback. 
    27208  
    27209 Traceback (most recent call last): 
    27210 File
    27211 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27212 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27213 mouseMoveEvent 
    27214 self.moveSegmentationPuck(x, y, record_seg=False) 
    27215 File
    27216 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27217 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27218 moveSegmentationPuck 
    27219 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27220 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27221 File
    27222 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27223 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27224 return self.position.origin() 
    27225 ^^^^^^^^^^^^^ 
    27226 File
    27227 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27228 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27229 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27230 self.name) 
    27231 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27232 segmentation cursor" 
    27233  
    27234 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27235 segmentation cursor" 
    27236  
    27237 File
    27238 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27239 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27240 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27241 self.name) 
    27242  
    27243 See log for complete Python traceback. 
    27244  
    27245 Traceback (most recent call last): 
    27246 File
    27247 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27248 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27249 mouseMoveEvent 
    27250 self.moveSegmentationPuck(x, y, record_seg=False) 
    27251 File
    27252 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27253 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27254 moveSegmentationPuck 
    27255 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27256 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27257 File
    27258 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27259 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27260 return self.position.origin() 
    27261 ^^^^^^^^^^^^^ 
    27262 File
    27263 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27264 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27265 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27266 self.name) 
    27267 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27268 segmentation cursor" 
    27269  
    27270 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27271 segmentation cursor" 
    27272  
    27273 File
    27274 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27275 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27276 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27277 self.name) 
    27278  
    27279 See log for complete Python traceback. 
    27280  
    27281 Traceback (most recent call last): 
    27282 File
    27283 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27284 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27285 mouseMoveEvent 
    27286 self.moveSegmentationPuck(x, y, record_seg=False) 
    27287 File
    27288 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27289 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27290 moveSegmentationPuck 
    27291 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27292 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27293 File
    27294 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27295 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27296 return self.position.origin() 
    27297 ^^^^^^^^^^^^^ 
    27298 File
    27299 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27300 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27301 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27302 self.name) 
    27303 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27304 segmentation cursor" 
    27305  
    27306 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27307 segmentation cursor" 
    27308  
    27309 File
    27310 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27311 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27312 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27313 self.name) 
    27314  
    27315 See log for complete Python traceback. 
    27316  
    27317 Traceback (most recent call last): 
    27318 File
    27319 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27320 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27321 mouseMoveEvent 
    27322 self.moveSegmentationPuck(x, y, record_seg=False) 
    27323 File
    27324 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27325 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27326 moveSegmentationPuck 
    27327 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27328 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27329 File
    27330 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27331 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27332 return self.position.origin() 
    27333 ^^^^^^^^^^^^^ 
    27334 File
    27335 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27336 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27337 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27338 self.name) 
    27339 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27340 segmentation cursor" 
    27341  
    27342 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27343 segmentation cursor" 
    27344  
    27345 File
    27346 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27347 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27348 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27349 self.name) 
    27350  
    27351 See log for complete Python traceback. 
    27352  
    27353 Traceback (most recent call last): 
    27354 File
    27355 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27356 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27357 mouseMoveEvent 
    27358 self.moveSegmentationPuck(x, y, record_seg=False) 
    27359 File
    27360 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27361 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27362 moveSegmentationPuck 
    27363 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27364 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27365 File
    27366 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27367 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27368 return self.position.origin() 
    27369 ^^^^^^^^^^^^^ 
    27370 File
    27371 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27372 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27373 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27374 self.name) 
    27375 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27376 segmentation cursor" 
    27377  
    27378 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27379 segmentation cursor" 
    27380  
    27381 File
    27382 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27383 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27384 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27385 self.name) 
    27386  
    27387 See log for complete Python traceback. 
    27388  
    27389 Traceback (most recent call last): 
    27390 File
    27391 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27392 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27393 mouseMoveEvent 
    27394 self.moveSegmentationPuck(x, y, record_seg=False) 
    27395 File
    27396 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27397 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27398 moveSegmentationPuck 
    27399 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27400 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27401 File
    27402 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27403 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27404 return self.position.origin() 
    27405 ^^^^^^^^^^^^^ 
    27406 File
    27407 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27408 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27409 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27410 self.name) 
    27411 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27412 segmentation cursor" 
    27413  
    27414 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27415 segmentation cursor" 
    27416  
    27417 File
    27418 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27419 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27420 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27421 self.name) 
    27422  
    27423 See log for complete Python traceback. 
    27424  
    27425 Traceback (most recent call last): 
    27426 File
    27427 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27428 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27429 mouseMoveEvent 
    27430 self.moveSegmentationPuck(x, y, record_seg=False) 
    27431 File
    27432 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27433 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27434 moveSegmentationPuck 
    27435 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27436 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27437 File
    27438 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27439 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27440 return self.position.origin() 
    27441 ^^^^^^^^^^^^^ 
    27442 File
    27443 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27444 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27445 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27446 self.name) 
    27447 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27448 segmentation cursor" 
    27449  
    27450 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27451 segmentation cursor" 
    27452  
    27453 File
    27454 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27455 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27456 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27457 self.name) 
    27458  
    27459 See log for complete Python traceback. 
    27460  
    27461 Traceback (most recent call last): 
    27462 File
    27463 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27464 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27465 mouseMoveEvent 
    27466 self.moveSegmentationPuck(x, y, record_seg=False) 
    27467 File
    27468 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27469 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27470 moveSegmentationPuck 
    27471 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27472 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27473 File
    27474 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27475 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27476 return self.position.origin() 
    27477 ^^^^^^^^^^^^^ 
    27478 File
    27479 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27480 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27481 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27482 self.name) 
    27483 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27484 segmentation cursor" 
    27485  
    27486 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27487 segmentation cursor" 
    27488  
    27489 File
    27490 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27491 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27492 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27493 self.name) 
    27494  
    27495 See log for complete Python traceback. 
    27496  
    27497 Traceback (most recent call last): 
    27498 File
    27499 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27500 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27501 mouseMoveEvent 
    27502 self.moveSegmentationPuck(x, y, record_seg=False) 
    27503 File
    27504 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27505 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27506 moveSegmentationPuck 
    27507 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27508 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27509 File
    27510 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27511 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27512 return self.position.origin() 
    27513 ^^^^^^^^^^^^^ 
    27514 File
    27515 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27516 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27517 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27518 self.name) 
    27519 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27520 segmentation cursor" 
    27521  
    27522 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27523 segmentation cursor" 
    27524  
    27525 File
    27526 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27527 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27528 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27529 self.name) 
    27530  
    27531 See log for complete Python traceback. 
    27532  
    27533 Traceback (most recent call last): 
    27534 File
    27535 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27536 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27537 mouseMoveEvent 
    27538 self.moveSegmentationPuck(x, y, record_seg=False) 
    27539 File
    27540 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27541 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27542 moveSegmentationPuck 
    27543 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27544 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27545 File
    27546 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27547 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27548 return self.position.origin() 
    27549 ^^^^^^^^^^^^^ 
    27550 File
    27551 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27552 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27553 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27554 self.name) 
    27555 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27556 segmentation cursor" 
    27557  
    27558 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27559 segmentation cursor" 
    27560  
    27561 File
    27562 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27563 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27564 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27565 self.name) 
    27566  
    27567 See log for complete Python traceback. 
    27568  
    27569 Traceback (most recent call last): 
    27570 File
    27571 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27572 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27573 mouseMoveEvent 
    27574 self.moveSegmentationPuck(x, y, record_seg=False) 
    27575 File
    27576 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27577 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27578 moveSegmentationPuck 
    27579 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27580 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27581 File
    27582 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27583 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27584 return self.position.origin() 
    27585 ^^^^^^^^^^^^^ 
    27586 File
    27587 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27588 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27589 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27590 self.name) 
    27591 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27592 segmentation cursor" 
    27593  
    27594 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27595 segmentation cursor" 
    27596  
    27597 File
    27598 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27599 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27600 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27601 self.name) 
    27602  
    27603 See log for complete Python traceback. 
    27604  
    27605 Traceback (most recent call last): 
    27606 File
    27607 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27608 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27609 mouseMoveEvent 
    27610 self.moveSegmentationPuck(x, y, record_seg=False) 
    27611 File
    27612 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27613 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27614 moveSegmentationPuck 
    27615 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27616 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27617 File
    27618 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27619 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27620 return self.position.origin() 
    27621 ^^^^^^^^^^^^^ 
    27622 File
    27623 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27624 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27625 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27626 self.name) 
    27627 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27628 segmentation cursor" 
    27629  
    27630 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27631 segmentation cursor" 
    27632  
    27633 File
    27634 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27635 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27636 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27637 self.name) 
    27638  
    27639 See log for complete Python traceback. 
    27640  
    27641 Traceback (most recent call last): 
    27642 File
    27643 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27644 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27645 mouseMoveEvent 
    27646 self.moveSegmentationPuck(x, y, record_seg=False) 
    27647 File
    27648 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27649 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27650 moveSegmentationPuck 
    27651 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27652 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27653 File
    27654 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27655 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27656 return self.position.origin() 
    27657 ^^^^^^^^^^^^^ 
    27658 File
    27659 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27660 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27661 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27662 self.name) 
    27663 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27664 segmentation cursor" 
    27665  
    27666 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27667 segmentation cursor" 
    27668  
    27669 File
    27670 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27671 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27672 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27673 self.name) 
    27674  
    27675 See log for complete Python traceback. 
    27676  
    27677 Traceback (most recent call last): 
    27678 File
    27679 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27680 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27681 mouseMoveEvent 
    27682 self.moveSegmentationPuck(x, y, record_seg=False) 
    27683 File
    27684 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27685 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27686 moveSegmentationPuck 
    27687 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27688 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27689 File
    27690 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27691 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27692 return self.position.origin() 
    27693 ^^^^^^^^^^^^^ 
    27694 File
    27695 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27696 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27697 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27698 self.name) 
    27699 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27700 segmentation cursor" 
    27701  
    27702 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27703 segmentation cursor" 
    27704  
    27705 File
    27706 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27707 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27708 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27709 self.name) 
    27710  
    27711 See log for complete Python traceback. 
    27712  
    27713 Traceback (most recent call last): 
    27714 File
    27715 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27716 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27717 mouseMoveEvent 
    27718 self.moveSegmentationPuck(x, y, record_seg=False) 
    27719 File
    27720 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27721 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27722 moveSegmentationPuck 
    27723 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27724 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27725 File
    27726 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27727 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27728 return self.position.origin() 
    27729 ^^^^^^^^^^^^^ 
    27730 File
    27731 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27732 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27733 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27734 self.name) 
    27735 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27736 segmentation cursor" 
    27737  
    27738 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27739 segmentation cursor" 
    27740  
    27741 File
    27742 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27743 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27744 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27745 self.name) 
    27746  
    27747 See log for complete Python traceback. 
    27748  
    27749 Traceback (most recent call last): 
    27750 File
    27751 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27752 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27753 mouseMoveEvent 
    27754 self.moveSegmentationPuck(x, y, record_seg=False) 
    27755 File
    27756 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27757 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27758 moveSegmentationPuck 
    27759 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27760 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27761 File
    27762 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27763 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27764 return self.position.origin() 
    27765 ^^^^^^^^^^^^^ 
    27766 File
    27767 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27768 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27769 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27770 self.name) 
    27771 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27772 segmentation cursor" 
    27773  
    27774 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27775 segmentation cursor" 
    27776  
    27777 File
    27778 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27779 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27780 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27781 self.name) 
    27782  
    27783 See log for complete Python traceback. 
    27784  
    27785 Traceback (most recent call last): 
    27786 File
    27787 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27788 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27789 mouseMoveEvent 
    27790 self.moveSegmentationPuck(x, y, record_seg=False) 
    27791 File
    27792 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27793 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27794 moveSegmentationPuck 
    27795 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27796 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27797 File
    27798 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27799 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27800 return self.position.origin() 
    27801 ^^^^^^^^^^^^^ 
    27802 File
    27803 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27804 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27805 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27806 self.name) 
    27807 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27808 segmentation cursor" 
    27809  
    27810 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27811 segmentation cursor" 
    27812  
    27813 File
    27814 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27815 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27816 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27817 self.name) 
    27818  
    27819 See log for complete Python traceback. 
    27820  
    27821 Traceback (most recent call last): 
    27822 File
    27823 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27824 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27825 mouseMoveEvent 
    27826 self.moveSegmentationPuck(x, y, record_seg=False) 
    27827 File
    27828 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27829 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27830 moveSegmentationPuck 
    27831 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27832 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27833 File
    27834 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27835 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27836 return self.position.origin() 
    27837 ^^^^^^^^^^^^^ 
    27838 File
    27839 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27840 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27841 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27842 self.name) 
    27843 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27844 segmentation cursor" 
    27845  
    27846 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27847 segmentation cursor" 
    27848  
    27849 File
    27850 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27851 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27852 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27853 self.name) 
    27854  
    27855 See log for complete Python traceback. 
    27856  
    27857 Traceback (most recent call last): 
    27858 File
    27859 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27860 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27861 mouseMoveEvent 
    27862 self.moveSegmentationPuck(x, y, record_seg=False) 
    27863 File
    27864 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27865 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27866 moveSegmentationPuck 
    27867 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27868 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27869 File
    27870 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27871 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27872 return self.position.origin() 
    27873 ^^^^^^^^^^^^^ 
    27874 File
    27875 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27876 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27877 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27878 self.name) 
    27879 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27880 segmentation cursor" 
    27881  
    27882 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27883 segmentation cursor" 
    27884  
    27885 File
    27886 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27887 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27888 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27889 self.name) 
    27890  
    27891 See log for complete Python traceback. 
    27892  
    27893 Traceback (most recent call last): 
    27894 File
    27895 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27896 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27897 mouseMoveEvent 
    27898 self.moveSegmentationPuck(x, y, record_seg=False) 
    27899 File
    27900 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27901 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27902 moveSegmentationPuck 
    27903 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27904 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27905 File
    27906 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27907 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27908 return self.position.origin() 
    27909 ^^^^^^^^^^^^^ 
    27910 File
    27911 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27912 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27913 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27914 self.name) 
    27915 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27916 segmentation cursor" 
    27917  
    27918 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27919 segmentation cursor" 
    27920  
    27921 File
    27922 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27923 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27924 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27925 self.name) 
    27926  
    27927 See log for complete Python traceback. 
    27928  
    27929 Traceback (most recent call last): 
    27930 File
    27931 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27932 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27933 mouseMoveEvent 
    27934 self.moveSegmentationPuck(x, y, record_seg=False) 
    27935 File
    27936 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27937 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27938 moveSegmentationPuck 
    27939 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27940 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27941 File
    27942 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27943 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27944 return self.position.origin() 
    27945 ^^^^^^^^^^^^^ 
    27946 File
    27947 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27948 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27949 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27950 self.name) 
    27951 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27952 segmentation cursor" 
    27953  
    27954 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27955 segmentation cursor" 
    27956  
    27957 File
    27958 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27959 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27960 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27961 self.name) 
    27962  
    27963 See log for complete Python traceback. 
    27964  
    27965 Traceback (most recent call last): 
    27966 File
    27967 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27968 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    27969 mouseMoveEvent 
    27970 self.moveSegmentationPuck(x, y, record_seg=False) 
    27971 File
    27972 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27973 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    27974 moveSegmentationPuck 
    27975 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    27976 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    27977 File
    27978 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27979 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    27980 return self.position.origin() 
    27981 ^^^^^^^^^^^^^ 
    27982 File
    27983 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27984 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27985 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27986 self.name) 
    27987 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27988 segmentation cursor" 
    27989  
    27990 RuntimeError: Tried to get the position of deleted drawing "sagittal
    27991 segmentation cursor" 
    27992  
    27993 File
    27994 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    27995 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    27996 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    27997 self.name) 
    27998  
    27999 See log for complete Python traceback. 
    28000  
    28001 Traceback (most recent call last): 
    28002 File
    28003 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28004 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28005 mouseMoveEvent 
    28006 self.moveSegmentationPuck(x, y, record_seg=False) 
    28007 File
    28008 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28009 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28010 moveSegmentationPuck 
    28011 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28012 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28013 File
    28014 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28015 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28016 return self.position.origin() 
    28017 ^^^^^^^^^^^^^ 
    28018 File
    28019 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28020 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28021 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28022 self.name) 
    28023 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28024 segmentation cursor" 
    28025  
    28026 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28027 segmentation cursor" 
    28028  
    28029 File
    28030 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28031 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28032 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28033 self.name) 
    28034  
    28035 See log for complete Python traceback. 
    28036  
    28037 Traceback (most recent call last): 
    28038 File
    28039 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28040 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28041 mouseMoveEvent 
    28042 self.moveSegmentationPuck(x, y, record_seg=False) 
    28043 File
    28044 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28045 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28046 moveSegmentationPuck 
    28047 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28048 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28049 File
    28050 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28051 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28052 return self.position.origin() 
    28053 ^^^^^^^^^^^^^ 
    28054 File
    28055 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28056 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28057 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28058 self.name) 
    28059 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28060 segmentation cursor" 
    28061  
    28062 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28063 segmentation cursor" 
    28064  
    28065 File
    28066 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28067 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28068 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28069 self.name) 
    28070  
    28071 See log for complete Python traceback. 
    28072  
    28073 Traceback (most recent call last): 
    28074 File
    28075 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28076 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28077 mouseMoveEvent 
    28078 self.moveSegmentationPuck(x, y, record_seg=False) 
    28079 File
    28080 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28081 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28082 moveSegmentationPuck 
    28083 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28084 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28085 File
    28086 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28087 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28088 return self.position.origin() 
    28089 ^^^^^^^^^^^^^ 
    28090 File
    28091 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28092 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28093 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28094 self.name) 
    28095 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28096 segmentation cursor" 
    28097  
    28098 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28099 segmentation cursor" 
    28100  
    28101 File
    28102 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28103 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28104 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28105 self.name) 
    28106  
    28107 See log for complete Python traceback. 
    28108  
    28109 Traceback (most recent call last): 
    28110 File
    28111 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28112 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28113 mouseMoveEvent 
    28114 self.moveSegmentationPuck(x, y, record_seg=False) 
    28115 File
    28116 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28117 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28118 moveSegmentationPuck 
    28119 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28120 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28121 File
    28122 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28123 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28124 return self.position.origin() 
    28125 ^^^^^^^^^^^^^ 
    28126 File
    28127 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28128 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28129 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28130 self.name) 
    28131 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28132 segmentation cursor" 
    28133  
    28134 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28135 segmentation cursor" 
    28136  
    28137 File
    28138 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28139 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28140 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28141 self.name) 
    28142  
    28143 See log for complete Python traceback. 
    28144  
    28145 Traceback (most recent call last): 
    28146 File
    28147 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28148 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28149 mouseMoveEvent 
    28150 self.moveSegmentationPuck(x, y, record_seg=False) 
    28151 File
    28152 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28153 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28154 moveSegmentationPuck 
    28155 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28156 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28157 File
    28158 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28159 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28160 return self.position.origin() 
    28161 ^^^^^^^^^^^^^ 
    28162 File
    28163 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28164 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28165 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28166 self.name) 
    28167 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28168 segmentation cursor" 
    28169  
    28170 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28171 segmentation cursor" 
    28172  
    28173 File
    28174 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28175 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28176 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28177 self.name) 
    28178  
    28179 See log for complete Python traceback. 
    28180  
    28181 Traceback (most recent call last): 
    28182 File
    28183 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28184 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28185 mouseMoveEvent 
    28186 self.moveSegmentationPuck(x, y, record_seg=False) 
    28187 File
    28188 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28189 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28190 moveSegmentationPuck 
    28191 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28192 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28193 File
    28194 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28195 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28196 return self.position.origin() 
    28197 ^^^^^^^^^^^^^ 
    28198 File
    28199 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28200 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28201 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28202 self.name) 
    28203 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28204 segmentation cursor" 
    28205  
    28206 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28207 segmentation cursor" 
    28208  
    28209 File
    28210 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28211 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28212 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28213 self.name) 
    28214  
    28215 See log for complete Python traceback. 
    28216  
    28217 Traceback (most recent call last): 
    28218 File
    28219 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28220 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28221 mouseMoveEvent 
    28222 self.moveSegmentationPuck(x, y, record_seg=False) 
    28223 File
    28224 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28225 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28226 moveSegmentationPuck 
    28227 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28228 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28229 File
    28230 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28231 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28232 return self.position.origin() 
    28233 ^^^^^^^^^^^^^ 
    28234 File
    28235 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28236 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28237 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28238 self.name) 
    28239 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28240 segmentation cursor" 
    28241  
    28242 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28243 segmentation cursor" 
    28244  
    28245 File
    28246 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28247 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28248 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28249 self.name) 
    28250  
    28251 See log for complete Python traceback. 
    28252  
    28253 Traceback (most recent call last): 
    28254 File
    28255 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28256 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28257 mouseMoveEvent 
    28258 self.moveSegmentationPuck(x, y, record_seg=False) 
    28259 File
    28260 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28261 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28262 moveSegmentationPuck 
    28263 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28264 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28265 File
    28266 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28267 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28268 return self.position.origin() 
    28269 ^^^^^^^^^^^^^ 
    28270 File
    28271 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28272 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28273 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28274 self.name) 
    28275 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28276 segmentation cursor" 
    28277  
    28278 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28279 segmentation cursor" 
    28280  
    28281 File
    28282 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28283 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28284 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28285 self.name) 
    28286  
    28287 See log for complete Python traceback. 
    28288  
    28289 Traceback (most recent call last): 
    28290 File
    28291 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28292 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28293 mouseMoveEvent 
    28294 self.moveSegmentationPuck(x, y, record_seg=False) 
    28295 File
    28296 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28297 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28298 moveSegmentationPuck 
    28299 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28300 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28301 File
    28302 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28303 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28304 return self.position.origin() 
    28305 ^^^^^^^^^^^^^ 
    28306 File
    28307 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28308 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28309 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28310 self.name) 
    28311 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28312 segmentation cursor" 
    28313  
    28314 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28315 segmentation cursor" 
    28316  
    28317 File
    28318 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28319 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28320 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28321 self.name) 
    28322  
    28323 See log for complete Python traceback. 
    28324  
    28325 Traceback (most recent call last): 
    28326 File
    28327 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28328 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28329 mouseMoveEvent 
    28330 self.moveSegmentationPuck(x, y, record_seg=False) 
    28331 File
    28332 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28333 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28334 moveSegmentationPuck 
    28335 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28336 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28337 File
    28338 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28339 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28340 return self.position.origin() 
    28341 ^^^^^^^^^^^^^ 
    28342 File
    28343 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28344 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28345 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28346 self.name) 
    28347 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28348 segmentation cursor" 
    28349  
    28350 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28351 segmentation cursor" 
    28352  
    28353 File
    28354 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28355 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28356 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28357 self.name) 
    28358  
    28359 See log for complete Python traceback. 
    28360  
    28361 Traceback (most recent call last): 
    28362 File
    28363 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28364 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28365 mouseMoveEvent 
    28366 self.moveSegmentationPuck(x, y, record_seg=False) 
    28367 File
    28368 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28369 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28370 moveSegmentationPuck 
    28371 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28372 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28373 File
    28374 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28375 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28376 return self.position.origin() 
    28377 ^^^^^^^^^^^^^ 
    28378 File
    28379 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28380 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28381 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28382 self.name) 
    28383 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28384 segmentation cursor" 
    28385  
    28386 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28387 segmentation cursor" 
    28388  
    28389 File
    28390 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28391 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28392 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28393 self.name) 
    28394  
    28395 See log for complete Python traceback. 
    28396  
    28397 Traceback (most recent call last): 
    28398 File
    28399 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28400 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28401 mouseMoveEvent 
    28402 self.moveSegmentationPuck(x, y, record_seg=False) 
    28403 File
    28404 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28405 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28406 moveSegmentationPuck 
    28407 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28408 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28409 File
    28410 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28411 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28412 return self.position.origin() 
    28413 ^^^^^^^^^^^^^ 
    28414 File
    28415 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28416 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28417 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28418 self.name) 
    28419 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28420 segmentation cursor" 
    28421  
    28422 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28423 segmentation cursor" 
    28424  
    28425 File
    28426 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28427 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28428 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28429 self.name) 
    28430  
    28431 See log for complete Python traceback. 
    28432  
    28433 Traceback (most recent call last): 
    28434 File
    28435 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28436 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28437 mouseMoveEvent 
    28438 self.moveSegmentationPuck(x, y, record_seg=False) 
    28439 File
    28440 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28441 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28442 moveSegmentationPuck 
    28443 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28444 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28445 File
    28446 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28447 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28448 return self.position.origin() 
    28449 ^^^^^^^^^^^^^ 
    28450 File
    28451 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28452 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28453 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28454 self.name) 
    28455 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28456 segmentation cursor" 
    28457  
    28458 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28459 segmentation cursor" 
    28460  
    28461 File
    28462 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28463 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28464 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28465 self.name) 
    28466  
    28467 See log for complete Python traceback. 
    28468  
    28469 Traceback (most recent call last): 
    28470 File
    28471 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28472 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28473 mouseMoveEvent 
    28474 self.moveSegmentationPuck(x, y, record_seg=False) 
    28475 File
    28476 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28477 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28478 moveSegmentationPuck 
    28479 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28480 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28481 File
    28482 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28483 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28484 return self.position.origin() 
    28485 ^^^^^^^^^^^^^ 
    28486 File
    28487 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28488 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28489 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28490 self.name) 
    28491 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28492 segmentation cursor" 
    28493  
    28494 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28495 segmentation cursor" 
    28496  
    28497 File
    28498 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28499 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28500 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28501 self.name) 
    28502  
    28503 See log for complete Python traceback. 
    28504  
    28505 Traceback (most recent call last): 
    28506 File
    28507 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28508 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28509 mouseMoveEvent 
    28510 self.moveSegmentationPuck(x, y, record_seg=False) 
    28511 File
    28512 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28513 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28514 moveSegmentationPuck 
    28515 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28516 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28517 File
    28518 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28519 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28520 return self.position.origin() 
    28521 ^^^^^^^^^^^^^ 
    28522 File
    28523 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28524 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28525 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28526 self.name) 
    28527 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28528 segmentation cursor" 
    28529  
    28530 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28531 segmentation cursor" 
    28532  
    28533 File
    28534 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28535 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28536 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28537 self.name) 
    28538  
    28539 See log for complete Python traceback. 
    28540  
    28541 Traceback (most recent call last): 
    28542 File
    28543 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28544 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28545 mouseMoveEvent 
    28546 self.moveSegmentationPuck(x, y, record_seg=False) 
    28547 File
    28548 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28549 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28550 moveSegmentationPuck 
    28551 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28552 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28553 File
    28554 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28555 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28556 return self.position.origin() 
    28557 ^^^^^^^^^^^^^ 
    28558 File
    28559 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28560 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28561 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28562 self.name) 
    28563 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28564 segmentation cursor" 
    28565  
    28566 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28567 segmentation cursor" 
    28568  
    28569 File
    28570 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28571 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28572 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28573 self.name) 
    28574  
    28575 See log for complete Python traceback. 
    28576  
    28577 Traceback (most recent call last): 
    28578 File
    28579 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28580 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28581 mouseMoveEvent 
    28582 self.moveSegmentationPuck(x, y, record_seg=False) 
    28583 File
    28584 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28585 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28586 moveSegmentationPuck 
    28587 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28588 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28589 File
    28590 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28591 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28592 return self.position.origin() 
    28593 ^^^^^^^^^^^^^ 
    28594 File
    28595 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28596 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28597 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28598 self.name) 
    28599 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28600 segmentation cursor" 
    28601  
    28602 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28603 segmentation cursor" 
    28604  
    28605 File
    28606 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28607 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28608 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28609 self.name) 
    28610  
    28611 See log for complete Python traceback. 
    28612  
    28613 Traceback (most recent call last): 
    28614 File
    28615 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28616 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28617 mouseMoveEvent 
    28618 self.moveSegmentationPuck(x, y, record_seg=False) 
    28619 File
    28620 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28621 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28622 moveSegmentationPuck 
    28623 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28624 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28625 File
    28626 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28627 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28628 return self.position.origin() 
    28629 ^^^^^^^^^^^^^ 
    28630 File
    28631 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28632 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28633 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28634 self.name) 
    28635 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28636 segmentation cursor" 
    28637  
    28638 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28639 segmentation cursor" 
    28640  
    28641 File
    28642 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28643 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28644 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28645 self.name) 
    28646  
    28647 See log for complete Python traceback. 
    28648  
    28649 Traceback (most recent call last): 
    28650 File
    28651 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28652 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28653 mouseMoveEvent 
    28654 self.moveSegmentationPuck(x, y, record_seg=False) 
    28655 File
    28656 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28657 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28658 moveSegmentationPuck 
    28659 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28660 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28661 File
    28662 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28663 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28664 return self.position.origin() 
    28665 ^^^^^^^^^^^^^ 
    28666 File
    28667 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28668 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28669 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28670 self.name) 
    28671 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28672 segmentation cursor" 
    28673  
    28674 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28675 segmentation cursor" 
    28676  
    28677 File
    28678 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28679 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28680 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28681 self.name) 
    28682  
    28683 See log for complete Python traceback. 
    28684  
    28685 Traceback (most recent call last): 
    28686 File
    28687 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28688 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28689 mouseMoveEvent 
    28690 self.moveSegmentationPuck(x, y, record_seg=False) 
    28691 File
    28692 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28693 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28694 moveSegmentationPuck 
    28695 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28696 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28697 File
    28698 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28699 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28700 return self.position.origin() 
    28701 ^^^^^^^^^^^^^ 
    28702 File
    28703 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28704 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28705 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28706 self.name) 
    28707 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28708 segmentation cursor" 
    28709  
    28710 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28711 segmentation cursor" 
    28712  
    28713 File
    28714 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28715 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28716 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28717 self.name) 
    28718  
    28719 See log for complete Python traceback. 
    28720  
    28721 Traceback (most recent call last): 
    28722 File
    28723 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28724 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28725 mouseMoveEvent 
    28726 self.moveSegmentationPuck(x, y, record_seg=False) 
    28727 File
    28728 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28729 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28730 moveSegmentationPuck 
    28731 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28732 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28733 File
    28734 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28735 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28736 return self.position.origin() 
    28737 ^^^^^^^^^^^^^ 
    28738 File
    28739 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28740 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28741 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28742 self.name) 
    28743 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28744 segmentation cursor" 
    28745  
    28746 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28747 segmentation cursor" 
    28748  
    28749 File
    28750 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28751 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28752 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28753 self.name) 
    28754  
    28755 See log for complete Python traceback. 
    28756  
    28757 Traceback (most recent call last): 
    28758 File
    28759 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28760 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    28761 self.leaveEvent() 
    28762 File
    28763 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28764 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    28765 self.segmentation_tool.make_puck_invisible(self.axis) 
    28766 File
    28767 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28768 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    28769 make_puck_invisible 
    28770 self.segmentation_cursors[axis].display = False 
    28771 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28772 File
    28773 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28774 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    28775 super(Drawing, self).__setattr__(key, value) 
    28776 File
    28777 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28778 packages/chimerax/core/models.py", line 345, in _set_display 
    28779 Drawing.set_display(self, display) 
    28780 File
    28781 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28782 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    28783 dp = self.display_positions 
    28784 ^^^^^^^^^^^^^^^^^^^^^^ 
    28785 File
    28786 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28787 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    28788 dp = ones((len(self._positions),), bool) 
    28789 ^^^^^^^^^^^^^^^^^^^^ 
    28790 TypeError: object of type 'NoneType' has no len() 
    28791  
    28792 TypeError: object of type 'NoneType' has no len() 
    28793  
    28794 File
    28795 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28796 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    28797 dp = ones((len(self._positions),), bool) 
    28798 ^^^^^^^^^^^^^^^^^^^^ 
    28799  
    28800 See log for complete Python traceback. 
    28801  
    28802 Traceback (most recent call last): 
    28803 File
    28804 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28805 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    28806 self.enterEvent() 
    28807 File
    28808 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28809 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    28810 self.segmentation_tool.make_puck_visible(self.axis) 
    28811 File
    28812 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28813 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    28814 make_puck_visible 
    28815 self.segmentation_cursors[axis].display = True 
    28816 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28817 File
    28818 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28819 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    28820 super(Drawing, self).__setattr__(key, value) 
    28821 File
    28822 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28823 packages/chimerax/core/models.py", line 345, in _set_display 
    28824 Drawing.set_display(self, display) 
    28825 File
    28826 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28827 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    28828 dp = self.display_positions 
    28829 ^^^^^^^^^^^^^^^^^^^^^^ 
    28830 File
    28831 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28832 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    28833 dp = ones((len(self._positions),), bool) 
    28834 ^^^^^^^^^^^^^^^^^^^^ 
    28835 TypeError: object of type 'NoneType' has no len() 
    28836  
    28837 TypeError: object of type 'NoneType' has no len() 
    28838  
    28839 File
    28840 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28841 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    28842 dp = ones((len(self._positions),), bool) 
    28843 ^^^^^^^^^^^^^^^^^^^^ 
    28844  
    28845 See log for complete Python traceback. 
    28846  
    28847 Traceback (most recent call last): 
    28848 File
    28849 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28850 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28851 mouseMoveEvent 
    28852 self.moveSegmentationPuck(x, y, record_seg=False) 
    28853 File
    28854 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28855 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28856 moveSegmentationPuck 
    28857 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28858 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28859 File
    28860 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28861 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28862 return self.position.origin() 
    28863 ^^^^^^^^^^^^^ 
    28864 File
    28865 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28866 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28867 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28868 self.name) 
    28869 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28870 segmentation cursor" 
    28871  
    28872 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28873 segmentation cursor" 
    28874  
    28875 File
    28876 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28877 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28878 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28879 self.name) 
    28880  
    28881 See log for complete Python traceback. 
    28882  
    28883 Traceback (most recent call last): 
    28884 File
    28885 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28886 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28887 mouseMoveEvent 
    28888 self.moveSegmentationPuck(x, y, record_seg=False) 
    28889 File
    28890 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28891 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28892 moveSegmentationPuck 
    28893 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28894 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28895 File
    28896 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28897 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28898 return self.position.origin() 
    28899 ^^^^^^^^^^^^^ 
    28900 File
    28901 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28902 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28903 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28904 self.name) 
    28905 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28906 segmentation cursor" 
    28907  
    28908 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28909 segmentation cursor" 
    28910  
    28911 File
    28912 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28913 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28914 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28915 self.name) 
    28916  
    28917 See log for complete Python traceback. 
    28918  
    28919 Traceback (most recent call last): 
    28920 File
    28921 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28922 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    28923 mouseMoveEvent 
    28924 self.moveSegmentationPuck(x, y, record_seg=False) 
    28925 File
    28926 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28927 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    28928 moveSegmentationPuck 
    28929 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    28930 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28931 File
    28932 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28933 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    28934 return self.position.origin() 
    28935 ^^^^^^^^^^^^^ 
    28936 File
    28937 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28938 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28939 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28940 self.name) 
    28941 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28942 segmentation cursor" 
    28943  
    28944 RuntimeError: Tried to get the position of deleted drawing "sagittal
    28945 segmentation cursor" 
    28946  
    28947 File
    28948 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28949 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    28950 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    28951 self.name) 
    28952  
    28953 See log for complete Python traceback. 
    28954  
    28955 Traceback (most recent call last): 
    28956 File
    28957 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28958 packages/chimerax/segmentations/ui/orthoplanes.py", line 1139, in
    28959 mouseStoppedMoving 
    28960 level = self.drawingParentVolume().data.matrix()[ 
    28961 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28962 AttributeError: 'NoneType' object has no attribute 'data' 
    28963  
    28964 Error in sys.excepthook: 
    28965 Traceback (most recent call last): 
    28966 File
    28967 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28968 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    28969 self.leaveEvent() 
    28970 File
    28971 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28972 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    28973 self.segmentation_tool.make_puck_invisible(self.axis) 
    28974 File
    28975 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28976 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    28977 make_puck_invisible 
    28978 self.segmentation_cursors[axis].display = False 
    28979 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    28980 File
    28981 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28982 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    28983 super(Drawing, self).__setattr__(key, value) 
    28984 File
    28985 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28986 packages/chimerax/core/models.py", line 345, in _set_display 
    28987 Drawing.set_display(self, display) 
    28988 File
    28989 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28990 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    28991 dp = self.display_positions 
    28992 ^^^^^^^^^^^^^^^^^^^^^^ 
    28993 File
    28994 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    28995 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    28996 dp = ones((len(self._positions),), bool) 
    28997 ^^^^^^^^^^^^^^^^^^^^ 
    28998 TypeError: object of type 'NoneType' has no len() 
    28999  
    29000 The above exception was the direct cause of the following exception: 
    29001  
    29002 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    29003 set 
    29004  
    29005 The above exception was the direct cause of the following exception: 
    29006  
    29007 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    29008 set 
    29009  
    29010 The above exception was the direct cause of the following exception: 
    29011  
    29012 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    29013 set 
    29014  
    29015 The above exception was the direct cause of the following exception: 
    29016  
    29017 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    29018 set 
    29019  
    29020 The above exception was the direct cause of the following exception: 
    29021  
    29022 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    29023 set 
    29024  
    29025 The above exception was the direct cause of the following exception: 
    29026  
    29027 SystemError: <class 'PyQt6.QtCore.QEvent'> returned a result with an exception
    29028 set 
    29029  
    29030 The above exception was the direct cause of the following exception: 
    29031  
    29032 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    29033 exception set 
    29034  
    29035 The above exception was the direct cause of the following exception: 
    29036  
    29037 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    29038 exception set 
    29039  
    29040 The above exception was the direct cause of the following exception: 
    29041  
    29042 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    29043 exception set 
    29044  
    29045 The above exception was the direct cause of the following exception: 
    29046  
    29047 SystemError: <class 'PyQt6.QtGui.QPaintEvent'> returned a result with an
    29048 exception set 
    29049  
    29050 The above exception was the direct cause of the following exception: 
    29051  
    29052 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    29053 exception set 
    29054  
    29055 The above exception was the direct cause of the following exception: 
    29056  
    29057 SystemError: <class 'PyQt6.QtGui.QExposeEvent'> returned a result with an
    29058 exception set 
    29059  
    29060 The above exception was the direct cause of the following exception: 
    29061  
    29062 Traceback (most recent call last): 
    29063 File
    29064 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29065 packages/chimerax/core/logger.py", line 334, in ehook 
    29066 self.session.ui.thread_safe( 
    29067 File
    29068 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29069 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    29070 func(*args, **kw) 
    29071 File
    29072 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29073 packages/chimerax/core/logger.py", line 516, in report_exception 
    29074 self.bug(err_msg.replace("\n", "<br>"), is_html=True) 
    29075 File
    29076 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29077 packages/chimerax/core/logger.py", line 394, in bug 
    29078 self._log( 
    29079 File
    29080 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29081 packages/chimerax/core/logger.py", line 572, in _log 
    29082 if log.log(*args): 
    29083 ^^^^^^^^^^^^^^ 
    29084 File
    29085 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29086 packages/chimerax/log/tool.py", line 342, in log 
    29087 self.session.ui.thread_safe(f) 
    29088 File
    29089 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29090 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    29091 func(*args, **kw) 
    29092 File
    29093 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29094 packages/chimerax/log/tool.py", line 341, in <lambda> 
    29095 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    29096 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29097 File
    29098 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29099 packages/chimerax/log/tool.py", line 262, in show_error_message 
    29100 ed.showMessage(msg) 
    29101 SystemError: <built-in method showMessage of BiggerErrorDialog object at
    29102 0x16be8d240> returned a result with an exception set 
    29103  
    29104 Original exception was: 
    29105 Traceback (most recent call last): 
    29106 File
    29107 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29108 packages/chimerax/segmentations/ui/orthoplanes.py", line 1139, in
    29109 mouseStoppedMoving 
    29110 level = self.drawingParentVolume().data.matrix()[ 
    29111 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29112 AttributeError: 'NoneType' object has no attribute 'data' 
    29113 Traceback (most recent call last): 
    29114 File
    29115 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29116 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    29117 self.enterEvent() 
    29118 File
    29119 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29120 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    29121 self.segmentation_tool.make_puck_visible(self.axis) 
    29122 File
    29123 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29124 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    29125 make_puck_visible 
    29126 self.segmentation_cursors[axis].display = True 
    29127 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29128 File
    29129 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29130 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    29131 super(Drawing, self).__setattr__(key, value) 
    29132 File
    29133 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29134 packages/chimerax/core/models.py", line 345, in _set_display 
    29135 Drawing.set_display(self, display) 
    29136 File
    29137 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29138 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    29139 dp = self.display_positions 
    29140 ^^^^^^^^^^^^^^^^^^^^^^ 
    29141 File
    29142 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29143 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    29144 dp = ones((len(self._positions),), bool) 
    29145 ^^^^^^^^^^^^^^^^^^^^ 
    29146 TypeError: object of type 'NoneType' has no len() 
    29147  
    29148 TypeError: object of type 'NoneType' has no len() 
    29149  
    29150 File
    29151 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29152 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    29153 dp = ones((len(self._positions),), bool) 
    29154 ^^^^^^^^^^^^^^^^^^^^ 
    29155  
    29156 See log for complete Python traceback. 
    29157  
    29158 Traceback (most recent call last): 
    29159 File
    29160 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29161 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29162 mouseMoveEvent 
    29163 self.moveSegmentationPuck(x, y, record_seg=False) 
    29164 File
    29165 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29166 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29167 moveSegmentationPuck 
    29168 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29169 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29170 File
    29171 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29172 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29173 return self.position.origin() 
    29174 ^^^^^^^^^^^^^ 
    29175 File
    29176 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29177 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29178 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29179 self.name) 
    29180 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29181 segmentation cursor" 
    29182  
    29183 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29184 segmentation cursor" 
    29185  
    29186 File
    29187 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29188 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29189 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29190 self.name) 
    29191  
    29192 See log for complete Python traceback. 
    29193  
    29194 Traceback (most recent call last): 
    29195 File
    29196 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29197 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29198 mouseMoveEvent 
    29199 self.moveSegmentationPuck(x, y, record_seg=False) 
    29200 File
    29201 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29202 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29203 moveSegmentationPuck 
    29204 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29205 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29206 File
    29207 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29208 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29209 return self.position.origin() 
    29210 ^^^^^^^^^^^^^ 
    29211 File
    29212 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29213 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29214 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29215 self.name) 
    29216 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29217 segmentation cursor" 
    29218  
    29219 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29220 segmentation cursor" 
    29221  
    29222 File
    29223 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29224 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29225 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29226 self.name) 
    29227  
    29228 See log for complete Python traceback. 
    29229  
    29230 Traceback (most recent call last): 
    29231 File
    29232 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29233 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29234 mouseMoveEvent 
    29235 self.moveSegmentationPuck(x, y, record_seg=False) 
    29236 File
    29237 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29238 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29239 moveSegmentationPuck 
    29240 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29241 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29242 File
    29243 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29244 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29245 return self.position.origin() 
    29246 ^^^^^^^^^^^^^ 
    29247 File
    29248 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29249 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29250 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29251 self.name) 
    29252 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29253 segmentation cursor" 
    29254  
    29255 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29256 segmentation cursor" 
    29257  
    29258 File
    29259 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29260 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29261 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29262 self.name) 
    29263  
    29264 See log for complete Python traceback. 
    29265  
    29266 Traceback (most recent call last): 
    29267 File
    29268 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29269 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29270 mouseMoveEvent 
    29271 self.moveSegmentationPuck(x, y, record_seg=False) 
    29272 File
    29273 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29274 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29275 moveSegmentationPuck 
    29276 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29277 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29278 File
    29279 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29280 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29281 return self.position.origin() 
    29282 ^^^^^^^^^^^^^ 
    29283 File
    29284 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29285 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29286 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29287 self.name) 
    29288 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29289 segmentation cursor" 
    29290  
    29291 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29292 segmentation cursor" 
    29293  
    29294 File
    29295 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29296 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29297 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29298 self.name) 
    29299  
    29300 See log for complete Python traceback. 
    29301  
    29302 Traceback (most recent call last): 
    29303 File
    29304 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29305 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29306 mouseMoveEvent 
    29307 self.moveSegmentationPuck(x, y, record_seg=False) 
    29308 File
    29309 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29310 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29311 moveSegmentationPuck 
    29312 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29313 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29314 File
    29315 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29316 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29317 return self.position.origin() 
    29318 ^^^^^^^^^^^^^ 
    29319 File
    29320 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29321 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29322 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29323 self.name) 
    29324 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29325 segmentation cursor" 
    29326  
    29327 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29328 segmentation cursor" 
    29329  
    29330 File
    29331 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29332 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29333 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29334 self.name) 
    29335  
    29336 See log for complete Python traceback. 
    29337  
    29338 Traceback (most recent call last): 
    29339 File
    29340 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29341 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29342 mouseMoveEvent 
    29343 self.moveSegmentationPuck(x, y, record_seg=False) 
    29344 File
    29345 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29346 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29347 moveSegmentationPuck 
    29348 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29349 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29350 File
    29351 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29352 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29353 return self.position.origin() 
    29354 ^^^^^^^^^^^^^ 
    29355 File
    29356 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29357 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29358 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29359 self.name) 
    29360 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29361 segmentation cursor" 
    29362  
    29363 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29364 segmentation cursor" 
    29365  
    29366 File
    29367 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29368 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29369 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29370 self.name) 
    29371  
    29372 See log for complete Python traceback. 
    29373  
    29374 Traceback (most recent call last): 
    29375 File
    29376 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29377 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29378 mouseMoveEvent 
    29379 self.moveSegmentationPuck(x, y, record_seg=False) 
    29380 File
    29381 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29382 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29383 moveSegmentationPuck 
    29384 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29385 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29386 File
    29387 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29388 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29389 return self.position.origin() 
    29390 ^^^^^^^^^^^^^ 
    29391 File
    29392 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29393 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29394 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29395 self.name) 
    29396 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29397 segmentation cursor" 
    29398  
    29399 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29400 segmentation cursor" 
    29401  
    29402 File
    29403 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29404 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29405 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29406 self.name) 
    29407  
    29408 See log for complete Python traceback. 
    29409  
    29410 Traceback (most recent call last): 
    29411 File
    29412 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29413 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29414 mouseMoveEvent 
    29415 self.moveSegmentationPuck(x, y, record_seg=False) 
    29416 File
    29417 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29418 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29419 moveSegmentationPuck 
    29420 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29421 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29422 File
    29423 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29424 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29425 return self.position.origin() 
    29426 ^^^^^^^^^^^^^ 
    29427 File
    29428 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29429 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29430 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29431 self.name) 
    29432 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29433 segmentation cursor" 
    29434  
    29435 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29436 segmentation cursor" 
    29437  
    29438 File
    29439 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29440 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29441 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29442 self.name) 
    29443  
    29444 See log for complete Python traceback. 
    29445  
    29446 Traceback (most recent call last): 
    29447 File
    29448 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29449 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29450 mouseMoveEvent 
    29451 self.moveSegmentationPuck(x, y, record_seg=False) 
    29452 File
    29453 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29454 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29455 moveSegmentationPuck 
    29456 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29457 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29458 File
    29459 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29460 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29461 return self.position.origin() 
    29462 ^^^^^^^^^^^^^ 
    29463 File
    29464 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29465 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29466 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29467 self.name) 
    29468 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29469 segmentation cursor" 
    29470  
    29471 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29472 segmentation cursor" 
    29473  
    29474 File
    29475 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29476 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29477 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29478 self.name) 
    29479  
    29480 See log for complete Python traceback. 
    29481  
    29482 Traceback (most recent call last): 
    29483 File
    29484 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29485 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29486 mouseMoveEvent 
    29487 self.moveSegmentationPuck(x, y, record_seg=False) 
    29488 File
    29489 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29490 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29491 moveSegmentationPuck 
    29492 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29493 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29494 File
    29495 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29496 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29497 return self.position.origin() 
    29498 ^^^^^^^^^^^^^ 
    29499 File
    29500 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29501 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29502 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29503 self.name) 
    29504 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29505 segmentation cursor" 
    29506  
    29507 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29508 segmentation cursor" 
    29509  
    29510 File
    29511 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29512 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29513 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29514 self.name) 
    29515  
    29516 See log for complete Python traceback. 
    29517  
    29518 Traceback (most recent call last): 
    29519 File
    29520 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29521 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29522 mouseMoveEvent 
    29523 self.moveSegmentationPuck(x, y, record_seg=False) 
    29524 File
    29525 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29526 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29527 moveSegmentationPuck 
    29528 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29529 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29530 File
    29531 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29532 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29533 return self.position.origin() 
    29534 ^^^^^^^^^^^^^ 
    29535 File
    29536 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29537 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29538 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29539 self.name) 
    29540 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29541 segmentation cursor" 
    29542  
    29543 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29544 segmentation cursor" 
    29545  
    29546 File
    29547 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29548 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29549 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29550 self.name) 
    29551  
    29552 See log for complete Python traceback. 
    29553  
    29554 Traceback (most recent call last): 
    29555 File
    29556 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29557 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29558 mouseMoveEvent 
    29559 self.moveSegmentationPuck(x, y, record_seg=False) 
    29560 File
    29561 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29562 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29563 moveSegmentationPuck 
    29564 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29565 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29566 File
    29567 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29568 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29569 return self.position.origin() 
    29570 ^^^^^^^^^^^^^ 
    29571 File
    29572 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29573 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29574 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29575 self.name) 
    29576 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29577 segmentation cursor" 
    29578  
    29579 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29580 segmentation cursor" 
    29581  
    29582 File
    29583 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29584 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29585 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29586 self.name) 
    29587  
    29588 See log for complete Python traceback. 
    29589  
    29590 Traceback (most recent call last): 
    29591 File
    29592 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29593 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29594 mouseMoveEvent 
    29595 self.moveSegmentationPuck(x, y, record_seg=False) 
    29596 File
    29597 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29598 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29599 moveSegmentationPuck 
    29600 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29601 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29602 File
    29603 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29604 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29605 return self.position.origin() 
    29606 ^^^^^^^^^^^^^ 
    29607 File
    29608 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29609 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29610 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29611 self.name) 
    29612 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29613 segmentation cursor" 
    29614  
    29615 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29616 segmentation cursor" 
    29617  
    29618 File
    29619 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29620 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29621 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29622 self.name) 
    29623  
    29624 See log for complete Python traceback. 
    29625  
    29626 Traceback (most recent call last): 
    29627 File
    29628 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29629 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29630 mouseMoveEvent 
    29631 self.moveSegmentationPuck(x, y, record_seg=False) 
    29632 File
    29633 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29634 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29635 moveSegmentationPuck 
    29636 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29637 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29638 File
    29639 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29640 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29641 return self.position.origin() 
    29642 ^^^^^^^^^^^^^ 
    29643 File
    29644 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29645 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29646 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29647 self.name) 
    29648 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29649 segmentation cursor" 
    29650  
    29651 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29652 segmentation cursor" 
    29653  
    29654 File
    29655 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29656 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29657 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29658 self.name) 
    29659  
    29660 See log for complete Python traceback. 
    29661  
    29662 Traceback (most recent call last): 
    29663 File
    29664 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29665 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29666 mouseMoveEvent 
    29667 self.moveSegmentationPuck(x, y, record_seg=False) 
    29668 File
    29669 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29670 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29671 moveSegmentationPuck 
    29672 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29673 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29674 File
    29675 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29676 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29677 return self.position.origin() 
    29678 ^^^^^^^^^^^^^ 
    29679 File
    29680 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29681 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29682 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29683 self.name) 
    29684 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29685 segmentation cursor" 
    29686  
    29687 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29688 segmentation cursor" 
    29689  
    29690 File
    29691 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29692 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29693 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29694 self.name) 
    29695  
    29696 See log for complete Python traceback. 
    29697  
    29698 Traceback (most recent call last): 
    29699 File
    29700 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29701 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29702 mouseMoveEvent 
    29703 self.moveSegmentationPuck(x, y, record_seg=False) 
    29704 File
    29705 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29706 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29707 moveSegmentationPuck 
    29708 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29709 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29710 File
    29711 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29712 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29713 return self.position.origin() 
    29714 ^^^^^^^^^^^^^ 
    29715 File
    29716 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29717 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29718 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29719 self.name) 
    29720 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29721 segmentation cursor" 
    29722  
    29723 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29724 segmentation cursor" 
    29725  
    29726 File
    29727 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29728 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29729 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29730 self.name) 
    29731  
    29732 See log for complete Python traceback. 
    29733  
    29734 Traceback (most recent call last): 
    29735 File
    29736 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29737 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29738 mouseMoveEvent 
    29739 self.moveSegmentationPuck(x, y, record_seg=False) 
    29740 File
    29741 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29742 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29743 moveSegmentationPuck 
    29744 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29745 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29746 File
    29747 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29748 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29749 return self.position.origin() 
    29750 ^^^^^^^^^^^^^ 
    29751 File
    29752 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29753 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29754 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29755 self.name) 
    29756 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29757 segmentation cursor" 
    29758  
    29759 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29760 segmentation cursor" 
    29761  
    29762 File
    29763 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29764 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29765 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29766 self.name) 
    29767  
    29768 See log for complete Python traceback. 
    29769  
    29770 Traceback (most recent call last): 
    29771 File
    29772 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29773 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29774 mouseMoveEvent 
    29775 self.moveSegmentationPuck(x, y, record_seg=False) 
    29776 File
    29777 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29778 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29779 moveSegmentationPuck 
    29780 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29781 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29782 File
    29783 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29784 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29785 return self.position.origin() 
    29786 ^^^^^^^^^^^^^ 
    29787 File
    29788 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29789 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29790 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29791 self.name) 
    29792 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29793 segmentation cursor" 
    29794  
    29795 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29796 segmentation cursor" 
    29797  
    29798 File
    29799 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29800 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29801 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29802 self.name) 
    29803  
    29804 See log for complete Python traceback. 
    29805  
    29806 Traceback (most recent call last): 
    29807 File
    29808 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29809 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29810 mouseMoveEvent 
    29811 self.moveSegmentationPuck(x, y, record_seg=False) 
    29812 File
    29813 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29814 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29815 moveSegmentationPuck 
    29816 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29817 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29818 File
    29819 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29820 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29821 return self.position.origin() 
    29822 ^^^^^^^^^^^^^ 
    29823 File
    29824 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29825 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29826 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29827 self.name) 
    29828 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29829 segmentation cursor" 
    29830  
    29831 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29832 segmentation cursor" 
    29833  
    29834 File
    29835 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29836 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29837 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29838 self.name) 
    29839  
    29840 See log for complete Python traceback. 
    29841  
    29842 Traceback (most recent call last): 
    29843 File
    29844 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29845 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29846 mouseMoveEvent 
    29847 self.moveSegmentationPuck(x, y, record_seg=False) 
    29848 File
    29849 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29850 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29851 moveSegmentationPuck 
    29852 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29853 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29854 File
    29855 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29856 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29857 return self.position.origin() 
    29858 ^^^^^^^^^^^^^ 
    29859 File
    29860 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29861 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29862 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29863 self.name) 
    29864 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29865 segmentation cursor" 
    29866  
    29867 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29868 segmentation cursor" 
    29869  
    29870 File
    29871 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29872 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29873 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29874 self.name) 
    29875  
    29876 See log for complete Python traceback. 
    29877  
    29878 Traceback (most recent call last): 
    29879 File
    29880 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29881 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29882 mouseMoveEvent 
    29883 self.moveSegmentationPuck(x, y, record_seg=False) 
    29884 File
    29885 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29886 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29887 moveSegmentationPuck 
    29888 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29889 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29890 File
    29891 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29892 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29893 return self.position.origin() 
    29894 ^^^^^^^^^^^^^ 
    29895 File
    29896 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29897 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29898 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29899 self.name) 
    29900 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29901 segmentation cursor" 
    29902  
    29903 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29904 segmentation cursor" 
    29905  
    29906 File
    29907 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29908 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29909 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29910 self.name) 
    29911  
    29912 See log for complete Python traceback. 
    29913  
    29914 Traceback (most recent call last): 
    29915 File
    29916 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29917 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29918 mouseMoveEvent 
    29919 self.moveSegmentationPuck(x, y, record_seg=False) 
    29920 File
    29921 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29922 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29923 moveSegmentationPuck 
    29924 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29925 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29926 File
    29927 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29928 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29929 return self.position.origin() 
    29930 ^^^^^^^^^^^^^ 
    29931 File
    29932 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29933 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29934 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29935 self.name) 
    29936 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29937 segmentation cursor" 
    29938  
    29939 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29940 segmentation cursor" 
    29941  
    29942 File
    29943 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29944 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29945 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29946 self.name) 
    29947  
    29948 See log for complete Python traceback. 
    29949  
    29950 Traceback (most recent call last): 
    29951 File
    29952 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29953 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29954 mouseMoveEvent 
    29955 self.moveSegmentationPuck(x, y, record_seg=False) 
    29956 File
    29957 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29958 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29959 moveSegmentationPuck 
    29960 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29961 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29962 File
    29963 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29964 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    29965 return self.position.origin() 
    29966 ^^^^^^^^^^^^^ 
    29967 File
    29968 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29969 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29970 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29971 self.name) 
    29972 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29973 segmentation cursor" 
    29974  
    29975 RuntimeError: Tried to get the position of deleted drawing "sagittal
    29976 segmentation cursor" 
    29977  
    29978 File
    29979 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29980 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    29981 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    29982 self.name) 
    29983  
    29984 See log for complete Python traceback. 
    29985  
    29986 Traceback (most recent call last): 
    29987 File
    29988 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29989 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    29990 mouseMoveEvent 
    29991 self.moveSegmentationPuck(x, y, record_seg=False) 
    29992 File
    29993 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    29994 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    29995 moveSegmentationPuck 
    29996 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    29997 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    29998 File
    29999 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30000 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30001 return self.position.origin() 
    30002 ^^^^^^^^^^^^^ 
    30003 File
    30004 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30005 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30006 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30007 self.name) 
    30008 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30009 segmentation cursor" 
    30010  
    30011 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30012 segmentation cursor" 
    30013  
    30014 File
    30015 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30016 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30017 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30018 self.name) 
    30019  
    30020 See log for complete Python traceback. 
    30021  
    30022 Traceback (most recent call last): 
    30023 File
    30024 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30025 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30026 mouseMoveEvent 
    30027 self.moveSegmentationPuck(x, y, record_seg=False) 
    30028 File
    30029 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30030 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30031 moveSegmentationPuck 
    30032 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30033 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30034 File
    30035 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30036 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30037 return self.position.origin() 
    30038 ^^^^^^^^^^^^^ 
    30039 File
    30040 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30041 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30042 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30043 self.name) 
    30044 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30045 segmentation cursor" 
    30046  
    30047 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30048 segmentation cursor" 
    30049  
    30050 File
    30051 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30052 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30053 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30054 self.name) 
    30055  
    30056 See log for complete Python traceback. 
    30057  
    30058 Traceback (most recent call last): 
    30059 File
    30060 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30061 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30062 mouseMoveEvent 
    30063 self.moveSegmentationPuck(x, y, record_seg=False) 
    30064 File
    30065 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30066 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30067 moveSegmentationPuck 
    30068 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30069 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30070 File
    30071 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30072 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30073 return self.position.origin() 
    30074 ^^^^^^^^^^^^^ 
    30075 File
    30076 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30077 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30078 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30079 self.name) 
    30080 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30081 segmentation cursor" 
    30082  
    30083 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30084 segmentation cursor" 
    30085  
    30086 File
    30087 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30088 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30089 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30090 self.name) 
    30091  
    30092 See log for complete Python traceback. 
    30093  
    30094 Traceback (most recent call last): 
    30095 File
    30096 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30097 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30098 mouseMoveEvent 
    30099 self.moveSegmentationPuck(x, y, record_seg=False) 
    30100 File
    30101 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30102 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30103 moveSegmentationPuck 
    30104 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30105 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30106 File
    30107 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30108 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30109 return self.position.origin() 
    30110 ^^^^^^^^^^^^^ 
    30111 File
    30112 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30113 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30114 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30115 self.name) 
    30116 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30117 segmentation cursor" 
    30118  
    30119 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30120 segmentation cursor" 
    30121  
    30122 File
    30123 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30124 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30125 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30126 self.name) 
    30127  
    30128 See log for complete Python traceback. 
    30129  
    30130 Traceback (most recent call last): 
    30131 File
    30132 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30133 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30134 mouseMoveEvent 
    30135 self.moveSegmentationPuck(x, y, record_seg=False) 
    30136 File
    30137 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30138 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30139 moveSegmentationPuck 
    30140 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30141 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30142 File
    30143 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30144 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30145 return self.position.origin() 
    30146 ^^^^^^^^^^^^^ 
    30147 File
    30148 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30149 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30150 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30151 self.name) 
    30152 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30153 segmentation cursor" 
    30154  
    30155 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30156 segmentation cursor" 
    30157  
    30158 File
    30159 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30160 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30161 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30162 self.name) 
    30163  
    30164 See log for complete Python traceback. 
    30165  
    30166 Traceback (most recent call last): 
    30167 File
    30168 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30169 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30170 mouseMoveEvent 
    30171 self.moveSegmentationPuck(x, y, record_seg=False) 
    30172 File
    30173 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30174 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30175 moveSegmentationPuck 
    30176 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30177 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30178 File
    30179 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30180 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30181 return self.position.origin() 
    30182 ^^^^^^^^^^^^^ 
    30183 File
    30184 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30185 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30186 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30187 self.name) 
    30188 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30189 segmentation cursor" 
    30190  
    30191 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30192 segmentation cursor" 
    30193  
    30194 File
    30195 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30196 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30197 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30198 self.name) 
    30199  
    30200 See log for complete Python traceback. 
    30201  
    30202 Traceback (most recent call last): 
    30203 File
    30204 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30205 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30206 mouseMoveEvent 
    30207 self.moveSegmentationPuck(x, y, record_seg=False) 
    30208 File
    30209 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30210 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30211 moveSegmentationPuck 
    30212 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30213 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30214 File
    30215 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30216 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30217 return self.position.origin() 
    30218 ^^^^^^^^^^^^^ 
    30219 File
    30220 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30221 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30222 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30223 self.name) 
    30224 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30225 segmentation cursor" 
    30226  
    30227 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30228 segmentation cursor" 
    30229  
    30230 File
    30231 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30232 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30233 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30234 self.name) 
    30235  
    30236 See log for complete Python traceback. 
    30237  
    30238 Traceback (most recent call last): 
    30239 File
    30240 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30241 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30242 mouseMoveEvent 
    30243 self.moveSegmentationPuck(x, y, record_seg=False) 
    30244 File
    30245 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30246 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30247 moveSegmentationPuck 
    30248 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30249 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30250 File
    30251 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30252 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30253 return self.position.origin() 
    30254 ^^^^^^^^^^^^^ 
    30255 File
    30256 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30257 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30258 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30259 self.name) 
    30260 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30261 segmentation cursor" 
    30262  
    30263 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30264 segmentation cursor" 
    30265  
    30266 File
    30267 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30268 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30269 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30270 self.name) 
    30271  
    30272 See log for complete Python traceback. 
    30273  
    30274 Traceback (most recent call last): 
    30275 File
    30276 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30277 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30278 mouseMoveEvent 
    30279 self.moveSegmentationPuck(x, y, record_seg=False) 
    30280 File
    30281 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30282 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30283 moveSegmentationPuck 
    30284 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30285 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30286 File
    30287 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30288 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30289 return self.position.origin() 
    30290 ^^^^^^^^^^^^^ 
    30291 File
    30292 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30293 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30294 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30295 self.name) 
    30296 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30297 segmentation cursor" 
    30298  
    30299 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30300 segmentation cursor" 
    30301  
    30302 File
    30303 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30304 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30305 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30306 self.name) 
    30307  
    30308 See log for complete Python traceback. 
    30309  
    30310 Traceback (most recent call last): 
    30311 File
    30312 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30313 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30314 mouseMoveEvent 
    30315 self.moveSegmentationPuck(x, y, record_seg=False) 
    30316 File
    30317 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30318 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30319 moveSegmentationPuck 
    30320 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30321 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30322 File
    30323 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30324 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30325 return self.position.origin() 
    30326 ^^^^^^^^^^^^^ 
    30327 File
    30328 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30329 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30330 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30331 self.name) 
    30332 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30333 segmentation cursor" 
    30334  
    30335 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30336 segmentation cursor" 
    30337  
    30338 File
    30339 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30340 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30341 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30342 self.name) 
    30343  
    30344 See log for complete Python traceback. 
    30345  
    30346 Traceback (most recent call last): 
    30347 File
    30348 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30349 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30350 mouseMoveEvent 
    30351 self.moveSegmentationPuck(x, y, record_seg=False) 
    30352 File
    30353 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30354 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30355 moveSegmentationPuck 
    30356 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30357 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30358 File
    30359 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30360 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30361 return self.position.origin() 
    30362 ^^^^^^^^^^^^^ 
    30363 File
    30364 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30365 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30366 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30367 self.name) 
    30368 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30369 segmentation cursor" 
    30370  
    30371 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30372 segmentation cursor" 
    30373  
    30374 File
    30375 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30376 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30377 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30378 self.name) 
    30379  
    30380 See log for complete Python traceback. 
    30381  
    30382 Traceback (most recent call last): 
    30383 File
    30384 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30385 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30386 mouseMoveEvent 
    30387 self.moveSegmentationPuck(x, y, record_seg=False) 
    30388 File
    30389 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30390 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30391 moveSegmentationPuck 
    30392 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30393 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30394 File
    30395 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30396 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30397 return self.position.origin() 
    30398 ^^^^^^^^^^^^^ 
    30399 File
    30400 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30401 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30402 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30403 self.name) 
    30404 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30405 segmentation cursor" 
    30406  
    30407 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30408 segmentation cursor" 
    30409  
    30410 File
    30411 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30412 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30413 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30414 self.name) 
    30415  
    30416 See log for complete Python traceback. 
    30417  
    30418 Traceback (most recent call last): 
    30419 File
    30420 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30421 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30422 mouseMoveEvent 
    30423 self.moveSegmentationPuck(x, y, record_seg=False) 
    30424 File
    30425 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30426 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30427 moveSegmentationPuck 
    30428 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30429 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30430 File
    30431 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30432 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30433 return self.position.origin() 
    30434 ^^^^^^^^^^^^^ 
    30435 File
    30436 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30437 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30438 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30439 self.name) 
    30440 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30441 segmentation cursor" 
    30442  
    30443 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30444 segmentation cursor" 
    30445  
    30446 File
    30447 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30448 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30449 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30450 self.name) 
    30451  
    30452 See log for complete Python traceback. 
    30453  
    30454 Traceback (most recent call last): 
    30455 File
    30456 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30457 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30458 mouseMoveEvent 
    30459 self.moveSegmentationPuck(x, y, record_seg=False) 
    30460 File
    30461 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30462 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30463 moveSegmentationPuck 
    30464 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30465 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30466 File
    30467 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30468 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30469 return self.position.origin() 
    30470 ^^^^^^^^^^^^^ 
    30471 File
    30472 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30473 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30474 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30475 self.name) 
    30476 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30477 segmentation cursor" 
    30478  
    30479 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30480 segmentation cursor" 
    30481  
    30482 File
    30483 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30484 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30485 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30486 self.name) 
    30487  
    30488 See log for complete Python traceback. 
    30489  
    30490 Traceback (most recent call last): 
    30491 File
    30492 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30493 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30494 mouseMoveEvent 
    30495 self.moveSegmentationPuck(x, y, record_seg=False) 
    30496 File
    30497 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30498 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30499 moveSegmentationPuck 
    30500 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30501 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30502 File
    30503 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30504 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30505 return self.position.origin() 
    30506 ^^^^^^^^^^^^^ 
    30507 File
    30508 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30509 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30510 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30511 self.name) 
    30512 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30513 segmentation cursor" 
    30514  
    30515 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30516 segmentation cursor" 
    30517  
    30518 File
    30519 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30520 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30521 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30522 self.name) 
    30523  
    30524 See log for complete Python traceback. 
    30525  
    30526 Traceback (most recent call last): 
    30527 File
    30528 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30529 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30530 mouseMoveEvent 
    30531 self.moveSegmentationPuck(x, y, record_seg=False) 
    30532 File
    30533 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30534 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30535 moveSegmentationPuck 
    30536 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30537 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30538 File
    30539 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30540 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30541 return self.position.origin() 
    30542 ^^^^^^^^^^^^^ 
    30543 File
    30544 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30545 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30546 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30547 self.name) 
    30548 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30549 segmentation cursor" 
    30550  
    30551 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30552 segmentation cursor" 
    30553  
    30554 File
    30555 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30556 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30557 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30558 self.name) 
    30559  
    30560 See log for complete Python traceback. 
    30561  
    30562 Traceback (most recent call last): 
    30563 File
    30564 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30565 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30566 mouseMoveEvent 
    30567 self.moveSegmentationPuck(x, y, record_seg=False) 
    30568 File
    30569 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30570 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30571 moveSegmentationPuck 
    30572 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30573 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30574 File
    30575 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30576 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30577 return self.position.origin() 
    30578 ^^^^^^^^^^^^^ 
    30579 File
    30580 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30581 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30582 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30583 self.name) 
    30584 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30585 segmentation cursor" 
    30586  
    30587 RuntimeError: Tried to get the position of deleted drawing "sagittal
    30588 segmentation cursor" 
    30589  
    30590 File
    30591 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30592 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30593 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30594 self.name) 
    30595  
    30596 See log for complete Python traceback. 
    30597  
    30598 Traceback (most recent call last): 
    30599 File
    30600 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30601 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    30602 self.leaveEvent() 
    30603 File
    30604 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30605 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    30606 self.segmentation_tool.make_puck_invisible(self.axis) 
    30607 File
    30608 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30609 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    30610 make_puck_invisible 
    30611 self.segmentation_cursors[axis].display = False 
    30612 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30613 File
    30614 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30615 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    30616 super(Drawing, self).__setattr__(key, value) 
    30617 File
    30618 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30619 packages/chimerax/core/models.py", line 345, in _set_display 
    30620 Drawing.set_display(self, display) 
    30621 File
    30622 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30623 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    30624 dp = self.display_positions 
    30625 ^^^^^^^^^^^^^^^^^^^^^^ 
    30626 File
    30627 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30628 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    30629 dp = ones((len(self._positions),), bool) 
    30630 ^^^^^^^^^^^^^^^^^^^^ 
    30631 TypeError: object of type 'NoneType' has no len() 
    30632  
    30633 TypeError: object of type 'NoneType' has no len() 
    30634  
    30635 File
    30636 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30637 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    30638 dp = ones((len(self._positions),), bool) 
    30639 ^^^^^^^^^^^^^^^^^^^^ 
    30640  
    30641 See log for complete Python traceback. 
    30642  
    30643 Traceback (most recent call last): 
    30644 File
    30645 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30646 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    30647 self.enterEvent() 
    30648 File
    30649 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30650 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    30651 self.segmentation_tool.make_puck_visible(self.axis) 
    30652 File
    30653 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30654 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    30655 make_puck_visible 
    30656 self.segmentation_cursors[axis].display = True 
    30657 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30658 File
    30659 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30660 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    30661 super(Drawing, self).__setattr__(key, value) 
    30662 File
    30663 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30664 packages/chimerax/core/models.py", line 345, in _set_display 
    30665 Drawing.set_display(self, display) 
    30666 File
    30667 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30668 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    30669 dp = self.display_positions 
    30670 ^^^^^^^^^^^^^^^^^^^^^^ 
    30671 File
    30672 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30673 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    30674 dp = ones((len(self._positions),), bool) 
    30675 ^^^^^^^^^^^^^^^^^^^^ 
    30676 TypeError: object of type 'NoneType' has no len() 
    30677  
    30678 TypeError: object of type 'NoneType' has no len() 
    30679  
    30680 File
    30681 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30682 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    30683 dp = ones((len(self._positions),), bool) 
    30684 ^^^^^^^^^^^^^^^^^^^^ 
    30685  
    30686 See log for complete Python traceback. 
    30687  
    30688 Traceback (most recent call last): 
    30689 File
    30690 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30691 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30692 mouseMoveEvent 
    30693 self.moveSegmentationPuck(x, y, record_seg=False) 
    30694 File
    30695 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30696 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30697 moveSegmentationPuck 
    30698 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30699 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30700 File
    30701 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30702 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30703 return self.position.origin() 
    30704 ^^^^^^^^^^^^^ 
    30705 File
    30706 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30707 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30708 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30709 self.name) 
    30710 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    30711 cursor" 
    30712  
    30713 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    30714 cursor" 
    30715  
    30716 File
    30717 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30718 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30719 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30720 self.name) 
    30721  
    30722 See log for complete Python traceback. 
    30723  
    30724 Traceback (most recent call last): 
    30725 File
    30726 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30727 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30728 mouseMoveEvent 
    30729 self.moveSegmentationPuck(x, y, record_seg=False) 
    30730 File
    30731 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30732 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30733 moveSegmentationPuck 
    30734 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30735 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30736 File
    30737 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30738 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30739 return self.position.origin() 
    30740 ^^^^^^^^^^^^^ 
    30741 File
    30742 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30743 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30744 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30745 self.name) 
    30746 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    30747 cursor" 
    30748  
    30749 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    30750 cursor" 
    30751  
    30752 File
    30753 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30754 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30755 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30756 self.name) 
    30757  
    30758 See log for complete Python traceback. 
    30759  
    30760 Traceback (most recent call last): 
    30761 File
    30762 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30763 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30764 mouseMoveEvent 
    30765 self.moveSegmentationPuck(x, y, record_seg=False) 
    30766 File
    30767 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30768 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30769 moveSegmentationPuck 
    30770 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30771 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30772 File
    30773 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30774 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30775 return self.position.origin() 
    30776 ^^^^^^^^^^^^^ 
    30777 File
    30778 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30779 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30780 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30781 self.name) 
    30782 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    30783 cursor" 
    30784  
    30785 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    30786 cursor" 
    30787  
    30788 File
    30789 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30790 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30791 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30792 self.name) 
    30793  
    30794 See log for complete Python traceback. 
    30795  
    30796 Traceback (most recent call last): 
    30797 File
    30798 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30799 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30800 mouseMoveEvent 
    30801 self.moveSegmentationPuck(x, y, record_seg=False) 
    30802 File
    30803 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30804 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30805 moveSegmentationPuck 
    30806 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30807 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30808 File
    30809 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30810 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30811 return self.position.origin() 
    30812 ^^^^^^^^^^^^^ 
    30813 File
    30814 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30815 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30816 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30817 self.name) 
    30818 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    30819 cursor" 
    30820  
    30821 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    30822 cursor" 
    30823  
    30824 File
    30825 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30826 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30827 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30828 self.name) 
    30829  
    30830 See log for complete Python traceback. 
    30831  
    30832 Traceback (most recent call last): 
    30833 File
    30834 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30835 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30836 mouseMoveEvent 
    30837 self.moveSegmentationPuck(x, y, record_seg=False) 
    30838 File
    30839 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30840 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30841 moveSegmentationPuck 
    30842 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30843 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30844 File
    30845 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30846 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30847 return self.position.origin() 
    30848 ^^^^^^^^^^^^^ 
    30849 File
    30850 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30851 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30852 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30853 self.name) 
    30854 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    30855 cursor" 
    30856  
    30857 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    30858 cursor" 
    30859  
    30860 File
    30861 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30862 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30863 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30864 self.name) 
    30865  
    30866 See log for complete Python traceback. 
    30867  
    30868 Traceback (most recent call last): 
    30869 File
    30870 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30871 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30872 mouseMoveEvent 
    30873 self.moveSegmentationPuck(x, y, record_seg=False) 
    30874 File
    30875 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30876 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30877 moveSegmentationPuck 
    30878 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30879 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30880 File
    30881 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30882 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30883 return self.position.origin() 
    30884 ^^^^^^^^^^^^^ 
    30885 File
    30886 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30887 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30888 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30889 self.name) 
    30890 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    30891 cursor" 
    30892  
    30893 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    30894 cursor" 
    30895  
    30896 File
    30897 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30898 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30899 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30900 self.name) 
    30901  
    30902 See log for complete Python traceback. 
    30903  
    30904 Traceback (most recent call last): 
    30905 File
    30906 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30907 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30908 mouseMoveEvent 
    30909 self.moveSegmentationPuck(x, y, record_seg=False) 
    30910 File
    30911 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30912 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30913 moveSegmentationPuck 
    30914 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30915 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30916 File
    30917 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30918 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30919 return self.position.origin() 
    30920 ^^^^^^^^^^^^^ 
    30921 File
    30922 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30923 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30924 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30925 self.name) 
    30926 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    30927 cursor" 
    30928  
    30929 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    30930 cursor" 
    30931  
    30932 File
    30933 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30934 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30935 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30936 self.name) 
    30937  
    30938 See log for complete Python traceback. 
    30939  
    30940 Traceback (most recent call last): 
    30941 File
    30942 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30943 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30944 mouseMoveEvent 
    30945 self.moveSegmentationPuck(x, y, record_seg=False) 
    30946 File
    30947 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30948 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30949 moveSegmentationPuck 
    30950 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30951 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30952 File
    30953 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30954 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30955 return self.position.origin() 
    30956 ^^^^^^^^^^^^^ 
    30957 File
    30958 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30959 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30960 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30961 self.name) 
    30962 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    30963 cursor" 
    30964  
    30965 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    30966 cursor" 
    30967  
    30968 File
    30969 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30970 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30971 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30972 self.name) 
    30973  
    30974 See log for complete Python traceback. 
    30975  
    30976 Traceback (most recent call last): 
    30977 File
    30978 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30979 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    30980 mouseMoveEvent 
    30981 self.moveSegmentationPuck(x, y, record_seg=False) 
    30982 File
    30983 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30984 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    30985 moveSegmentationPuck 
    30986 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    30987 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    30988 File
    30989 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30990 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    30991 return self.position.origin() 
    30992 ^^^^^^^^^^^^^ 
    30993 File
    30994 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    30995 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    30996 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    30997 self.name) 
    30998 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    30999 cursor" 
    31000  
    31001 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    31002 cursor" 
    31003  
    31004 File
    31005 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31006 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    31007 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    31008 self.name) 
    31009  
    31010 See log for complete Python traceback. 
    31011  
    31012 Traceback (most recent call last): 
    31013 File
    31014 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31015 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    31016 mouseMoveEvent 
    31017 self.moveSegmentationPuck(x, y, record_seg=False) 
    31018 File
    31019 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31020 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    31021 moveSegmentationPuck 
    31022 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    31023 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    31024 File
    31025 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31026 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    31027 return self.position.origin() 
    31028 ^^^^^^^^^^^^^ 
    31029 File
    31030 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31031 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    31032 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    31033 self.name) 
    31034 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    31035 cursor" 
    31036  
    31037 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    31038 cursor" 
    31039  
    31040 File
    31041 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31042 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    31043 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    31044 self.name) 
    31045  
    31046 See log for complete Python traceback. 
    31047  
    31048 Traceback (most recent call last): 
    31049 File
    31050 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31051 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    31052 mouseMoveEvent 
    31053 self.moveSegmentationPuck(x, y, record_seg=False) 
    31054 File
    31055 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31056 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    31057 moveSegmentationPuck 
    31058 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    31059 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    31060 File
    31061 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31062 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    31063 return self.position.origin() 
    31064 ^^^^^^^^^^^^^ 
    31065 File
    31066 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31067 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    31068 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    31069 self.name) 
    31070 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    31071 cursor" 
    31072  
    31073 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    31074 cursor" 
    31075  
    31076 File
    31077 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31078 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    31079 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    31080 self.name) 
    31081  
    31082 See log for complete Python traceback. 
    31083  
    31084 Traceback (most recent call last): 
    31085 File
    31086 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31087 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    31088 mouseMoveEvent 
    31089 self.moveSegmentationPuck(x, y, record_seg=False) 
    31090 File
    31091 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31092 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    31093 moveSegmentationPuck 
    31094 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    31095 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    31096 File
    31097 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31098 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    31099 return self.position.origin() 
    31100 ^^^^^^^^^^^^^ 
    31101 File
    31102 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31103 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    31104 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    31105 self.name) 
    31106 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    31107 cursor" 
    31108  
    31109 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    31110 cursor" 
    31111  
    31112 File
    31113 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31114 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    31115 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    31116 self.name) 
    31117  
    31118 See log for complete Python traceback. 
    31119  
    31120 Traceback (most recent call last): 
    31121 File
    31122 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31123 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    31124 self.leaveEvent() 
    31125 File
    31126 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31127 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    31128 self.segmentation_tool.make_puck_invisible(self.axis) 
    31129 File
    31130 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31131 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    31132 make_puck_invisible 
    31133 self.segmentation_cursors[axis].display = False 
    31134 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    31135 File
    31136 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31137 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    31138 super(Drawing, self).__setattr__(key, value) 
    31139 File
    31140 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31141 packages/chimerax/core/models.py", line 345, in _set_display 
    31142 Drawing.set_display(self, display) 
    31143 File
    31144 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31145 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    31146 dp = self.display_positions 
    31147 ^^^^^^^^^^^^^^^^^^^^^^ 
    31148 File
    31149 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31150 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    31151 dp = ones((len(self._positions),), bool) 
    31152 ^^^^^^^^^^^^^^^^^^^^ 
    31153 TypeError: object of type 'NoneType' has no len() 
    31154  
    31155 TypeError: object of type 'NoneType' has no len() 
    31156  
    31157 File
    31158 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31159 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    31160 dp = ones((len(self._positions),), bool) 
    31161 ^^^^^^^^^^^^^^^^^^^^ 
    31162  
    31163 See log for complete Python traceback. 
    31164  
    31165 Traceback (most recent call last): 
    31166 File
    31167 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31168 packages/chimerax/segmentations/ui/orthoplanes.py", line 1127, in
    31169 mouseStoppedMoving 
    31170 level = self.drawingParentVolume().data.matrix()[ 
    31171 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    31172 AttributeError: 'NoneType' object has no attribute 'data' 
    31173  
    31174 AttributeError: 'NoneType' object has no attribute 'data' 
    31175  
    31176 File
    31177 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31178 packages/chimerax/segmentations/ui/orthoplanes.py", line 1127, in
    31179 mouseStoppedMoving 
    31180 level = self.drawingParentVolume().data.matrix()[ 
    31181 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    31182  
    31183 See log for complete Python traceback. 
    31184  
    31185 Traceback (most recent call last): 
    31186 File
    31187 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31188 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    31189 self.enterEvent() 
    31190 File
    31191 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31192 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    31193 self.segmentation_tool.make_puck_visible(self.axis) 
    31194 File
    31195 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31196 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    31197 make_puck_visible 
    31198 self.segmentation_cursors[axis].display = True 
    31199 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    31200 File
    31201 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31202 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    31203 super(Drawing, self).__setattr__(key, value) 
    31204 File
    31205 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31206 packages/chimerax/core/models.py", line 345, in _set_display 
    31207 Drawing.set_display(self, display) 
    31208 File
    31209 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31210 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    31211 dp = self.display_positions 
    31212 ^^^^^^^^^^^^^^^^^^^^^^ 
    31213 File
    31214 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31215 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    31216 dp = ones((len(self._positions),), bool) 
    31217 ^^^^^^^^^^^^^^^^^^^^ 
    31218 TypeError: object of type 'NoneType' has no len() 
    31219  
    31220 TypeError: object of type 'NoneType' has no len() 
    31221  
    31222 File
    31223 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31224 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    31225 dp = ones((len(self._positions),), bool) 
    31226 ^^^^^^^^^^^^^^^^^^^^ 
    31227  
    31228 See log for complete Python traceback. 
    31229  
    31230 Traceback (most recent call last): 
    31231 File
    31232 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31233 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    31234 mouseMoveEvent 
    31235 self.moveSegmentationPuck(x, y, record_seg=False) 
    31236 File
    31237 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31238 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    31239 moveSegmentationPuck 
    31240 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    31241 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    31242 File
    31243 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31244 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    31245 return self.position.origin() 
    31246 ^^^^^^^^^^^^^ 
    31247 File
    31248 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31249 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    31250 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    31251 self.name) 
    31252 RuntimeError: Tried to get the position of deleted drawing "sagittal
    31253 segmentation cursor" 
    31254  
    31255 RuntimeError: Tried to get the position of deleted drawing "sagittal
    31256 segmentation cursor" 
    31257  
    31258 File
    31259 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31260 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    31261 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    31262 self.name) 
    31263  
    31264 See log for complete Python traceback. 
    31265  
    31266 Traceback (most recent call last): 
    31267 File
    31268 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31269 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    31270 self.leaveEvent() 
    31271 File
    31272 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31273 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    31274 self.segmentation_tool.make_puck_invisible(self.axis) 
    31275 File
    31276 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31277 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    31278 make_puck_invisible 
    31279 self.segmentation_cursors[axis].display = False 
    31280 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    31281 File
    31282 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31283 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    31284 super(Drawing, self).__setattr__(key, value) 
    31285 File
    31286 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31287 packages/chimerax/core/models.py", line 345, in _set_display 
    31288 Drawing.set_display(self, display) 
    31289 File
    31290 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31291 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    31292 dp = self.display_positions 
    31293 ^^^^^^^^^^^^^^^^^^^^^^ 
    31294 File
    31295 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31296 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    31297 dp = ones((len(self._positions),), bool) 
    31298 ^^^^^^^^^^^^^^^^^^^^ 
    31299 TypeError: object of type 'NoneType' has no len() 
    31300  
    31301 TypeError: object of type 'NoneType' has no len() 
    31302  
    31303 File
    31304 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31305 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    31306 dp = ones((len(self._positions),), bool) 
    31307 ^^^^^^^^^^^^^^^^^^^^ 
    31308  
    31309 See log for complete Python traceback. 
    31310  
    31311 Traceback (most recent call last): 
    31312 File
    31313 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31314 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    31315 self.enterEvent() 
    31316 File
    31317 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31318 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    31319 self.segmentation_tool.make_puck_visible(self.axis) 
    31320 File
    31321 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31322 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    31323 make_puck_visible 
    31324 self.segmentation_cursors[axis].display = True 
    31325 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    31326 File
    31327 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31328 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    31329 super(Drawing, self).__setattr__(key, value) 
    31330 File
    31331 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31332 packages/chimerax/core/models.py", line 345, in _set_display 
    31333 Drawing.set_display(self, display) 
    31334 File
    31335 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31336 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    31337 dp = self.display_positions 
    31338 ^^^^^^^^^^^^^^^^^^^^^^ 
    31339 File
    31340 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31341 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    31342 dp = ones((len(self._positions),), bool) 
    31343 ^^^^^^^^^^^^^^^^^^^^ 
    31344 TypeError: object of type 'NoneType' has no len() 
    31345  
    31346 TypeError: object of type 'NoneType' has no len() 
    31347  
    31348 File
    31349 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31350 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    31351 dp = ones((len(self._positions),), bool) 
    31352 ^^^^^^^^^^^^^^^^^^^^ 
    31353  
    31354 See log for complete Python traceback. 
    31355  
    31356 Traceback (most recent call last): 
    31357 File
    31358 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31359 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    31360 mouseMoveEvent 
    31361 self.moveSegmentationPuck(x, y, record_seg=False) 
    31362 File
    31363 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31364 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    31365 moveSegmentationPuck 
    31366 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    31367 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    31368 File
    31369 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31370 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    31371 return self.position.origin() 
    31372 ^^^^^^^^^^^^^ 
    31373 File
    31374 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31375 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    31376 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    31377 self.name) 
    31378 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    31379 cursor" 
    31380  
    31381 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    31382 cursor" 
    31383  
    31384 File
    31385 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31386 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    31387 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    31388 self.name) 
    31389  
    31390 See log for complete Python traceback. 
    31391  
    31392 Traceback (most recent call last): 
    31393 File
    31394 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31395 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    31396 self.leaveEvent() 
    31397 File
    31398 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31399 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    31400 self.segmentation_tool.make_puck_invisible(self.axis) 
    31401 File
    31402 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31403 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    31404 make_puck_invisible 
    31405 self.segmentation_cursors[axis].display = False 
    31406 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    31407 File
    31408 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31409 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    31410 super(Drawing, self).__setattr__(key, value) 
    31411 File
    31412 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31413 packages/chimerax/core/models.py", line 345, in _set_display 
    31414 Drawing.set_display(self, display) 
    31415 File
    31416 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31417 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    31418 dp = self.display_positions 
    31419 ^^^^^^^^^^^^^^^^^^^^^^ 
    31420 File
    31421 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31422 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    31423 dp = ones((len(self._positions),), bool) 
    31424 ^^^^^^^^^^^^^^^^^^^^ 
    31425 TypeError: object of type 'NoneType' has no len() 
    31426  
    31427 TypeError: object of type 'NoneType' has no len() 
    31428  
    31429 File
    31430 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    31431 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    31432 dp = ones((len(self._positions),), bool) 
    31433 ^^^^^^^^^^^^^^^^^^^^ 
    31434  
    31435 See log for complete Python traceback. 
    31436  
    31437 
    31438 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    31439 > manuscript/Start_Aug_2024/Local-ref-PflAB/Develop-model-Figure.cxs
    31440 > includeMaps true
    31441 
    31442 ——— End of log from Sat Aug 24 18:41:04 2024 ———
    31443 
    31444 opened ChimeraX session 
    31445 
    31446 > ui tool show "Segment Map"
    31447 
    31448 > hide #!1.6 models
    31449 
    31450 The cached device pixel ratio value was stale on window expose. Please file a
    31451 QTBUG which explains how to reproduce. 
    31452 
    31453 Segmenting FlgY-PflA.mrc, density threshold 0.002900 
    31454 Only showing 60 of 1053 regions. 
    31455 Showing 60 of 1053 region surfaces 
    31456 46616 watershed regions, grouped to 1053 regions 
    31457 Showing FlgY-PflA.seg - 1053 regions, 60 surfaces 
    31458 
    31459 > hide #!4 models
    31460 
    31461 > hide #!5 models
    31462 
    31463 > hide #!7 models
    31464 
    31465 > hide #16 models
    31466 
    31467 > hide #18 models
    31468 
    31469 > hide #!19 models
    31470 
    31471 > hide #20 models
    31472 
    31473 > hide #!21 models
    31474 
    31475 > hide #22 models
    31476 
    31477 > show #!2 models
    31478 
    31479 > hide #!2 models
    31480 
    31481 Segmenting FlgY-PflA.mrc, density threshold 0.002900 
    31482 Only showing 60 of 1053 regions. 
    31483 Showing 60 of 1053 region surfaces 
    31484 46616 watershed regions, grouped to 1053 regions 
    31485 Showing FlgY-PflA.seg - 1053 regions, 60 surfaces 
    31486 
    31487 > select #21.1
    31488 
    31489 1 model selected 
    31490 
    31491 > select add #21.25
    31492 
    31493 2 models selected 
    31494 
    31495 > select add #21.22
    31496 
    31497 3 models selected 
    31498 
    31499 > select add #21.19
    31500 
    31501 4 models selected 
    31502 
    31503 > select add #21.28
    31504 
    31505 5 models selected 
    31506 
    31507 > select add #21.5
    31508 
    31509 6 models selected 
    31510 
    31511 > select add #21.16
    31512 
    31513 7 models selected 
    31514 
    31515 > select add #21.15
    31516 
    31517 8 models selected 
    31518 
    31519 > select add #21.14
    31520 
    31521 9 models selected 
    31522 Grouped 9 regions 
    31523 
    31524 > select add #21.11
    31525 
    31526 2 models selected 
    31527 
    31528 > select add #21.8
    31529 
    31530 3 models selected 
    31531 
    31532 > select add #21.30
    31533 
    31534 4 models selected 
    31535 
    31536 > select add #21.18
    31537 
    31538 5 models selected 
    31539 
    31540 > select add #21.23
    31541 
    31542 6 models selected 
    31543 
    31544 > select add #21.26
    31545 
    31546 7 models selected 
    31547 
    31548 > select add #21.9
    31549 
    31550 8 models selected 
    31551 
    31552 > select add #21.4
    31553 
    31554 9 models selected 
    31555 Grouped 9 regions 
    31556 
    31557 > select add #21.31
    31558 
    31559 2 models selected 
    31560 
    31561 > select add #21.20
    31562 
    31563 3 models selected 
    31564 
    31565 > select add #21.24
    31566 
    31567 4 models selected 
    31568 
    31569 > select add #21.27
    31570 
    31571 5 models selected 
    31572 
    31573 > select add #21.6
    31574 
    31575 6 models selected 
    31576 
    31577 > select add #21.2
    31578 
    31579 7 models selected 
    31580 Grouped 7 regions 
    31581 Ungrouped to 7 regions 
    31582 
    31583 > select subtract #21.6
    31584 
    31585 6 models selected 
    31586 
    31587 > select subtract #21.2
    31588 
    31589 5 models selected 
    31590 
    31591 > select subtract #21.4
    31592 
    31593 4 models selected 
    31594 
    31595 > select add #21.37
    31596 
    31597 5 models selected 
    31598 Grouped 5 regions 
    31599 Ungrouped to 5 regions 
    31600 
    31601 > select #21.8
    31602 
    31603 1 model selected 
    31604 
    31605 > select add #21.2
    31606 
    31607 2 models selected 
    31608 
    31609 > select add #21.6
    31610 
    31611 3 models selected 
    31612 
    31613 > select add #21.4
    31614 
    31615 4 models selected 
    31616 
    31617 > select add #21.11
    31618 
    31619 5 models selected 
    31620 Grouped 5 regions 
    31621 
    31622 The cached device pixel ratio value was stale on window expose. Please file a
    31623 QTBUG which explains how to reproduce. 
    31624 
    31625 Opened FlgY-PflA_imasked as #23, grid size 220,250,200, pixel 2.15,2.15,2.15,
    31626 shown at step 1, values float32 
    31627 
    31628 The cached device pixel ratio value was stale on window expose. Please file a
    31629 QTBUG which explains how to reproduce. 
    31630 
    31631 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    31632 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    31633 > segment_Aug2420204/4x-FlgY-PflA.mrc models #23
    31634 
    31635 > hide #!1 models
    31636 
    31637 > select add #21
    31638 
    31639 41 models selected 
    31640 
    31641 > hide #!21 models
    31642 
    31643 > select subtract #21
    31644 
    31645 Nothing selected 
    31646 
    31647 > show #22 models
    31648 
    31649 > show #20 models
    31650 
    31651 > show #18 models
    31652 
    31653 > show #16 models
    31654 
    31655 > volume gaussian #23 sDev 1.5
    31656 
    31657 Opened 4x-FlgY-PflA.mrc gaussian as #24, grid size 220,250,200, pixel
    31658 2.15,2.15,2.15, shown at step 1, values float32 
    31659 
    31660 > color #24 #72727259 models
    31661 
    31662 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    31663 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-
    31664 > files/fold_2024_08_24_18_52_cj_pilno/fold_2024_08_24_18_52_cj_pilno_model_0.cif
    31665 
    31666 Chain information for fold_2024_08_24_18_52_cj_pilno_model_0.cif #25 
    31667 --- 
    31668 Chain | Description 
    31669 A | . 
    31670 B | . 
    31671  
    31672 
    31673 > hide #16 models
    31674 
    31675 > hide #18 models
    31676 
    31677 > hide #20 models
    31678 
    31679 > hide #22 models
    31680 
    31681 > hide #!24 models
    31682 
    31683 > show #!6 models
    31684 
    31685 > select add #25
    31686 
    31687 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    31688 
    31689 > ui mousemode right "translate selected models"
    31690 
    31691 > view matrix models #25,1,0,0,54.542,0,1,0,107.69,0,0,1,187.71
    31692 
    31693 > view matrix models #25,1,0,0,315.46,0,1,0,99.412,0,0,1,177.4
    31694 
    31695 > show #!23 models
    31696 
    31697 > ui mousemode right "rotate selected models"
    31698 
    31699 > view matrix models
    31700 > #25,0.92497,-0.25489,-0.2819,309.98,-0.073904,0.60695,-0.7913,88.864,0.37279,0.75276,0.54257,186
    31701 
    31702 > ui mousemode right "translate selected models"
    31703 
    31704 > view matrix models
    31705 > #25,0.92497,-0.25489,-0.2819,323.18,-0.073904,0.60695,-0.7913,59.794,0.37279,0.75276,0.54257,154.07
    31706 
    31707 > view matrix models
    31708 > #25,0.92497,-0.25489,-0.2819,315.02,-0.073904,0.60695,-0.7913,50.859,0.37279,0.75276,0.54257,155.86
    31709 
    31710 > view matrix models
    31711 > #25,0.92497,-0.25489,-0.2819,313.66,-0.073904,0.60695,-0.7913,52.673,0.37279,0.75276,0.54257,159.19
    31712 
    31713 > ui tool show "Fit in Map"
    31714 
    31715 The cached device pixel ratio value was stale on window expose. Please file a
    31716 QTBUG which explains how to reproduce. 
    31717 
    31718 [Repeated 1 time(s)]
    31719 
    31720 > fitmap #25 inMap #6
    31721 
    31722 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#25) to map Cage.mrc
    31723 gaussian (#6) using 3000 atoms 
    31724 average map value = 0.01786, steps = 568 
    31725 shifted from previous position = 6.42 
    31726 rotated from previous position = 18.5 degrees 
    31727 atoms outside contour = 1398, contour level = 0.0029 
    31728  
    31729 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#25) relative to
    31730 Cage.mrc gaussian (#6) coordinates: 
    31731 Matrix rotation and translation 
    31732 0.93069891 0.01078518 -0.36562716 312.00547894 
    31733 -0.24907478 0.75071594 -0.61187199 52.38438399 
    31734 0.26788298 0.66053710 0.70137682 165.28070412 
    31735 Axis 0.88058898 -0.43842979 -0.17983982 
    31736 Axis point 0.00000000 -168.92693268 313.54903096 
    31737 Rotation angle (degrees) 46.25929668 
    31738 Shift along axis 222.05766187 
    31739  
    31740 
    31741 > fitmap #25 inMap #6
    31742 
    31743 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#25) to map Cage.mrc
    31744 gaussian (#6) using 3000 atoms 
    31745 average map value = 0.01786, steps = 48 
    31746 shifted from previous position = 0.0347 
    31747 rotated from previous position = 0.68 degrees 
    31748 atoms outside contour = 1400, contour level = 0.0029 
    31749  
    31750 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#25) relative to
    31751 Cage.mrc gaussian (#6) coordinates: 
    31752 Matrix rotation and translation 
    31753 0.92708453 0.01757937 -0.37443990 312.02395524 
    31754 -0.25911489 0.75187863 -0.60624912 52.39103307 
    31755 0.27087588 0.65906714 0.70161012 165.31032924 
    31756 Axis 0.87439758 -0.44594586 -0.19120974 
    31757 Axis point 0.00000000 -170.71746548 316.54258510 
    31758 Rotation angle (degrees) 46.34719667 
    31759 Shift along axis 217.86048186 
    31760  
    31761 
    31762 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    31763 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-
    31764 > files/fold_2024_08_24_18_52_cj_pilno/fold_2024_08_24_18_52_cj_pilno_model_0.cif
    31765 
    31766 Chain information for fold_2024_08_24_18_52_cj_pilno_model_0.cif #26 
    31767 --- 
    31768 Chain | Description 
    31769 A | . 
    31770 B | . 
    31771  
    31772 
    31773 > select subtract #25
    31774 
    31775 Nothing selected 
    31776 
    31777 > select add #26
    31778 
    31779 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    31780 
    31781 > select subtract #26
    31782 
    31783 Nothing selected 
    31784 
    31785 > select add #26
    31786 
    31787 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    31788 
    31789 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    31790 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-
    31791 > files/fold_2024_08_24_18_52_cj_pilno/fold_2024_08_24_18_52_cj_pilno_model_0.cif
    31792 
    31793 Chain information for fold_2024_08_24_18_52_cj_pilno_model_0.cif #27 
    31794 --- 
    31795 Chain | Description 
    31796 A | . 
    31797 B | . 
    31798  
    31799 
    31800 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    31801 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-
    31802 > files/fold_2024_08_24_18_52_cj_pilno/fold_2024_08_24_18_52_cj_pilno_model_0.cif
    31803 
    31804 Chain information for fold_2024_08_24_18_52_cj_pilno_model_0.cif #28 
    31805 --- 
    31806 Chain | Description 
    31807 A | . 
    31808 B | . 
    31809  
    31810 
    31811 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    31812 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-
    31813 > files/fold_2024_08_24_18_52_cj_pilno/fold_2024_08_24_18_52_cj_pilno_model_0.cif
    31814 
    31815 Chain information for fold_2024_08_24_18_52_cj_pilno_model_0.cif #29 
    31816 --- 
    31817 Chain | Description 
    31818 A | . 
    31819 B | . 
    31820  
    31821 
    31822 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    31823 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-
    31824 > files/fold_2024_08_24_18_52_cj_pilno/fold_2024_08_24_18_52_cj_pilno_model_0.cif
    31825 
    31826 Chain information for fold_2024_08_24_18_52_cj_pilno_model_0.cif #30 
    31827 --- 
    31828 Chain | Description 
    31829 A | . 
    31830 B | . 
    31831  
    31832 
    31833 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    31834 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-
    31835 > files/fold_2024_08_24_18_52_cj_pilno/fold_2024_08_24_18_52_cj_pilno_model_0.cif
    31836 
    31837 Chain information for fold_2024_08_24_18_52_cj_pilno_model_0.cif #31 
    31838 --- 
    31839 Chain | Description 
    31840 A | . 
    31841 B | . 
    31842  
    31843 
    31844 > select add #27
    31845 
    31846 6000 atoms, 6102 bonds, 728 residues, 2 models selected 
    31847 
    31848 > select add #28
    31849 
    31850 9000 atoms, 9153 bonds, 1092 residues, 3 models selected 
    31851 
    31852 > select add #29
    31853 
    31854 12000 atoms, 12204 bonds, 1456 residues, 4 models selected 
    31855 
    31856 > select add #30
    31857 
    31858 15000 atoms, 15255 bonds, 1820 residues, 5 models selected 
    31859 
    31860 > select add #31
    31861 
    31862 18000 atoms, 18306 bonds, 2184 residues, 6 models selected 
    31863 
    31864 > view matrix models
    31865 > #26,1,0,0,88.1,0,1,0,244.56,0,0,1,-3.9196,#27,1,0,0,88.1,0,1,0,244.56,0,0,1,-3.9196,#28,1,0,0,88.1,0,1,0,244.56,0,0,1,-3.9196,#29,1,0,0,88.1,0,1,0,244.56,0,0,1,-3.9196,#30,1,0,0,88.1,0,1,0,244.56,0,0,1,-3.9196,#31,1,0,0,88.1,0,1,0,244.56,0,0,1,-3.9196
    31866 
    31867 > view matrix models
    31868 > #26,1,0,0,151.79,0,1,0,186.89,0,0,1,231.34,#27,1,0,0,151.79,0,1,0,186.89,0,0,1,231.34,#28,1,0,0,151.79,0,1,0,186.89,0,0,1,231.34,#29,1,0,0,151.79,0,1,0,186.89,0,0,1,231.34,#30,1,0,0,151.79,0,1,0,186.89,0,0,1,231.34,#31,1,0,0,151.79,0,1,0,186.89,0,0,1,231.34
    31869 
    31870 > view matrix models
    31871 > #26,1,0,0,362.26,0,1,0,196.53,0,0,1,161.39,#27,1,0,0,362.26,0,1,0,196.53,0,0,1,161.39,#28,1,0,0,362.26,0,1,0,196.53,0,0,1,161.39,#29,1,0,0,362.26,0,1,0,196.53,0,0,1,161.39,#30,1,0,0,362.26,0,1,0,196.53,0,0,1,161.39,#31,1,0,0,362.26,0,1,0,196.53,0,0,1,161.39
    31872 
    31873 > view matrix models
    31874 > #26,1,0,0,353.03,0,1,0,179.71,0,0,1,162.21,#27,1,0,0,353.03,0,1,0,179.71,0,0,1,162.21,#28,1,0,0,353.03,0,1,0,179.71,0,0,1,162.21,#29,1,0,0,353.03,0,1,0,179.71,0,0,1,162.21,#30,1,0,0,353.03,0,1,0,179.71,0,0,1,162.21,#31,1,0,0,353.03,0,1,0,179.71,0,0,1,162.21
    31875 
    31876 > view matrix models
    31877 > #26,1,0,0,354.78,0,1,0,130.47,0,0,1,162.64,#27,1,0,0,354.78,0,1,0,130.47,0,0,1,162.64,#28,1,0,0,354.78,0,1,0,130.47,0,0,1,162.64,#29,1,0,0,354.78,0,1,0,130.47,0,0,1,162.64,#30,1,0,0,354.78,0,1,0,130.47,0,0,1,162.64,#31,1,0,0,354.78,0,1,0,130.47,0,0,1,162.64
    31878 
    31879 > ui mousemode right "rotate selected models"
    31880 
    31881 > view matrix models
    31882 > #26,0.99976,0.0017322,-0.021724,354.62,-0.0074231,0.96429,-0.26473,128.05,0.02049,0.26482,0.96408,165.04,#27,0.99976,0.0017322,-0.021724,354.62,-0.0074231,0.96429,-0.26473,128.05,0.02049,0.26482,0.96408,165.04,#28,0.99976,0.0017322,-0.021724,354.62,-0.0074231,0.96429,-0.26473,128.05,0.02049,0.26482,0.96408,165.04,#29,0.99976,0.0017322,-0.021724,354.62,-0.0074231,0.96429,-0.26473,128.05,0.02049,0.26482,0.96408,165.04,#30,0.99976,0.0017322,-0.021724,354.62,-0.0074231,0.96429,-0.26473,128.05,0.02049,0.26482,0.96408,165.04,#31,0.99976,0.0017322,-0.021724,354.62,-0.0074231,0.96429,-0.26473,128.05,0.02049,0.26482,0.96408,165.04
    31883 
    31884 > view matrix models
    31885 > #26,0.99641,-0.027713,-0.08003,353.87,-0.058377,0.45986,-0.88607,118.11,0.061359,0.88756,0.45659,167.36,#27,0.99641,-0.027713,-0.08003,353.87,-0.058377,0.45986,-0.88607,118.11,0.061359,0.88756,0.45659,167.36,#28,0.99641,-0.027713,-0.08003,353.87,-0.058377,0.45986,-0.88607,118.11,0.061359,0.88756,0.45659,167.36,#29,0.99641,-0.027713,-0.08003,353.87,-0.058377,0.45986,-0.88607,118.11,0.061359,0.88756,0.45659,167.36,#30,0.99641,-0.027713,-0.08003,353.87,-0.058377,0.45986,-0.88607,118.11,0.061359,0.88756,0.45659,167.36,#31,0.99641,-0.027713,-0.08003,353.87,-0.058377,0.45986,-0.88607,118.11,0.061359,0.88756,0.45659,167.36
    31886 
    31887 > view matrix models
    31888 > #26,0.97839,-0.18605,-0.090176,352.12,0.005967,0.46138,-0.88718,119.03,0.20667,0.86747,0.45253,169.22,#27,0.97839,-0.18605,-0.090176,352.12,0.005967,0.46138,-0.88718,119.03,0.20667,0.86747,0.45253,169.22,#28,0.97839,-0.18605,-0.090176,352.12,0.005967,0.46138,-0.88718,119.03,0.20667,0.86747,0.45253,169.22,#29,0.97839,-0.18605,-0.090176,352.12,0.005967,0.46138,-0.88718,119.03,0.20667,0.86747,0.45253,169.22,#30,0.97839,-0.18605,-0.090176,352.12,0.005967,0.46138,-0.88718,119.03,0.20667,0.86747,0.45253,169.22,#31,0.97839,-0.18605,-0.090176,352.12,0.005967,0.46138,-0.88718,119.03,0.20667,0.86747,0.45253,169.22
    31889 
    31890 > ui mousemode right "translate selected models"
    31891 
    31892 > view matrix models
    31893 > #26,0.97839,-0.18605,-0.090176,448.65,0.005967,0.46138,-0.88718,143.03,0.20667,0.86747,0.45253,185,#27,0.97839,-0.18605,-0.090176,448.65,0.005967,0.46138,-0.88718,143.03,0.20667,0.86747,0.45253,185,#28,0.97839,-0.18605,-0.090176,448.65,0.005967,0.46138,-0.88718,143.03,0.20667,0.86747,0.45253,185,#29,0.97839,-0.18605,-0.090176,448.65,0.005967,0.46138,-0.88718,143.03,0.20667,0.86747,0.45253,185,#30,0.97839,-0.18605,-0.090176,448.65,0.005967,0.46138,-0.88718,143.03,0.20667,0.86747,0.45253,185,#31,0.97839,-0.18605,-0.090176,448.65,0.005967,0.46138,-0.88718,143.03,0.20667,0.86747,0.45253,185
    31894 
    31895 > view matrix models
    31896 > #26,0.97839,-0.18605,-0.090176,445.68,0.005967,0.46138,-0.88718,216.05,0.20667,0.86747,0.45253,176.25,#27,0.97839,-0.18605,-0.090176,445.68,0.005967,0.46138,-0.88718,216.05,0.20667,0.86747,0.45253,176.25,#28,0.97839,-0.18605,-0.090176,445.68,0.005967,0.46138,-0.88718,216.05,0.20667,0.86747,0.45253,176.25,#29,0.97839,-0.18605,-0.090176,445.68,0.005967,0.46138,-0.88718,216.05,0.20667,0.86747,0.45253,176.25,#30,0.97839,-0.18605,-0.090176,445.68,0.005967,0.46138,-0.88718,216.05,0.20667,0.86747,0.45253,176.25,#31,0.97839,-0.18605,-0.090176,445.68,0.005967,0.46138,-0.88718,216.05,0.20667,0.86747,0.45253,176.25
    31897 
    31898 > select subtract #27
    31899 
    31900 15000 atoms, 15255 bonds, 1820 residues, 5 models selected 
    31901 
    31902 > select subtract #28
    31903 
    31904 12000 atoms, 12204 bonds, 1456 residues, 4 models selected 
    31905 
    31906 > select subtract #29
    31907 
    31908 9000 atoms, 9153 bonds, 1092 residues, 3 models selected 
    31909 
    31910 > select subtract #30
    31911 
    31912 6000 atoms, 6102 bonds, 728 residues, 2 models selected 
    31913 
    31914 > select subtract #31
    31915 
    31916 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    31917 
    31918 > view matrix models
    31919 > #26,0.97839,-0.18605,-0.090176,364.84,0.005967,0.46138,-0.88718,116.08,0.20667,0.86747,0.45253,205.94
    31920 
    31921 > view matrix models
    31922 > #26,0.97839,-0.18605,-0.090176,366.08,0.005967,0.46138,-0.88718,98.395,0.20667,0.86747,0.45253,165.67
    31923 
    31924 > view matrix models
    31925 > #26,0.97839,-0.18605,-0.090176,349.59,0.005967,0.46138,-0.88718,99.774,0.20667,0.86747,0.45253,174.21
    31926 
    31927 > view matrix models
    31928 > #26,0.97839,-0.18605,-0.090176,347.22,0.005967,0.46138,-0.88718,98.372,0.20667,0.86747,0.45253,151.02
    31929 
    31930 > view matrix models
    31931 > #26,0.97839,-0.18605,-0.090176,349.81,0.005967,0.46138,-0.88718,120.02,0.20667,0.86747,0.45253,156.45
    31932 
    31933 > fitmap #26 inMap #6
    31934 
    31935 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#26) to map Cage.mrc
    31936 gaussian (#6) using 3000 atoms 
    31937 average map value = 0.009604, steps = 80 
    31938 shifted from previous position = 4.66 
    31939 rotated from previous position = 4.4 degrees 
    31940 atoms outside contour = 1638, contour level = 0.0029 
    31941  
    31942 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#26) relative to
    31943 Cage.mrc gaussian (#6) coordinates: 
    31944 Matrix rotation and translation 
    31945 0.99095832 -0.12732914 -0.04229540 348.72422743 
    31946 0.02130832 0.46059175 -0.88735629 116.15241974 
    31947 0.13246722 0.87843186 0.45914040 158.94538969 
    31948 Axis 0.99166488 -0.09814652 0.08347465 
    31949 Axis point 0.00000000 -31.74773307 188.65199171 
    31950 Rotation angle (degrees) 62.91285056 
    31951 Shift along axis 347.68552652 
    31952  
    31953 
    31954 > fitmap #26 inMap #6
    31955 
    31956 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#26) to map Cage.mrc
    31957 gaussian (#6) using 3000 atoms 
    31958 average map value = 0.009604, steps = 48 
    31959 shifted from previous position = 0.0173 
    31960 rotated from previous position = 0.486 degrees 
    31961 atoms outside contour = 1639, contour level = 0.0029 
    31962  
    31963 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#26) relative to
    31964 Cage.mrc gaussian (#6) coordinates: 
    31965 Matrix rotation and translation 
    31966 0.99081929 -0.13067073 -0.03467425 348.71015746 
    31967 0.02931675 0.45804974 -0.88844300 116.13587719 
    31968 0.13197602 0.87926992 0.45767536 158.96154931 
    31969 Axis 0.99156840 -0.09347963 0.08974224 
    31970 Axis point 0.00000000 -30.41823890 186.01327426 
    31971 Rotation angle (degrees) 63.04618095 
    31972 Shift along axis 349.17919971 
    31973  
    31974 
    31975 > select subtract #26
    31976 
    31977 Nothing selected 
    31978 
    31979 > select add #27
    31980 
    31981 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    31982 
    31983 > view matrix models
    31984 > #27,0.97839,-0.18605,-0.090176,387.83,0.005967,0.46138,-0.88718,180.85,0.20667,0.86747,0.45253,210.83
    31985 
    31986 > view matrix models
    31987 > #27,0.97839,-0.18605,-0.090176,367.4,0.005967,0.46138,-0.88718,158.27,0.20667,0.86747,0.45253,164.47
    31988 
    31989 > view matrix models
    31990 > #27,0.97839,-0.18605,-0.090176,365.76,0.005967,0.46138,-0.88718,180.89,0.20667,0.86747,0.45253,153.66
    31991 
    31992 > fitmap #27 inMap #6
    31993 
    31994 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    31995 gaussian (#6) using 3000 atoms 
    31996 average map value = 0.01953, steps = 280 
    31997 shifted from previous position = 8.48 
    31998 rotated from previous position = 25.9 degrees 
    31999 atoms outside contour = 1513, contour level = 0.0029 
    32000  
    32001 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    32002 Cage.mrc gaussian (#6) coordinates: 
    32003 Matrix rotation and translation 
    32004 0.94621886 -0.21346030 0.24311432 366.79271649 
    32005 0.32340230 0.64494702 -0.69242638 173.76134240 
    32006 -0.00899032 0.73381063 0.67929458 158.67334416 
    32007 Axis 0.92334252 0.16321195 0.34756360 
    32008 Axis point 0.00000000 40.77645214 130.52364332 
    32009 Rotation angle (degrees) 50.56293760 
    32010 Shift along axis 422.18431665 
    32011  
    32012 
    32013 > ui mousemode right "rotate selected models"
    32014 
    32015 > view matrix models
    32016 > #27,0.94842,-0.22882,0.21943,366.51,0.31326,0.57,-0.75959,172.44,0.048731,0.78914,0.61228,159.48
    32017 
    32018 > fitmap #27 inMap #6
    32019 
    32020 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    32021 gaussian (#6) using 3000 atoms 
    32022 average map value = 0.01953, steps = 112 
    32023 shifted from previous position = 1.67 
    32024 rotated from previous position = 6.02 degrees 
    32025 atoms outside contour = 1509, contour level = 0.0029 
    32026  
    32027 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    32028 Cage.mrc gaussian (#6) coordinates: 
    32029 Matrix rotation and translation 
    32030 0.93694303 -0.22175852 0.27011277 366.74037708 
    32031 0.34906509 0.63155990 -0.69230460 173.82299032 
    32032 -0.01706795 0.74293691 0.66914380 158.66734319 
    32033 Axis 0.91354959 0.18279420 0.36333653 
    32034 Axis point 0.00000000 45.20597981 114.94745236 
    32035 Rotation angle (degrees) 51.76973869 
    32036 Shift along axis 424.45899636 
    32037  
    32038 
    32039 > ui mousemode right "translate selected models"
    32040 
    32041 > view matrix models
    32042 > #27,0.93694,-0.22176,0.27011,363.53,0.34907,0.63156,-0.6923,167.67,-0.017068,0.74294,0.66914,153.05
    32043 
    32044 > ui mousemode right "rotate selected models"
    32045 
    32046 > view matrix models
    32047 > #27,0.99739,-0.069445,-0.01991,363.57,0.036735,0.72484,-0.68794,164.1,0.062205,0.68541,0.72549,154.09
    32048 
    32049 > ui mousemode right "translate selected models"
    32050 
    32051 > view matrix models
    32052 > #27,0.99739,-0.069445,-0.01991,361.19,0.036735,0.72484,-0.68794,175.13,0.062205,0.68541,0.72549,151.33
    32053 
    32054 > fitmap #27 inMap #6
    32055 
    32056 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    32057 gaussian (#6) using 3000 atoms 
    32058 average map value = 0.01953, steps = 252 
    32059 shifted from previous position = 9.28 
    32060 rotated from previous position = 18.1 degrees 
    32061 atoms outside contour = 1513, contour level = 0.0029 
    32062  
    32063 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    32064 Cage.mrc gaussian (#6) coordinates: 
    32065 Matrix rotation and translation 
    32066 0.94451291 -0.21523489 0.24813161 366.78885526 
    32067 0.32830983 0.64248911 -0.69240191 173.76722235 
    32068 -0.01039280 0.73544659 0.67750299 158.66921128 
    32069 Axis 0.92147509 0.16684109 0.35078156 
    32070 Axis point 0.00000000 41.77122619 127.55656810 
    32071 Rotation angle (degrees) 50.78349537 
    32072 Shift along axis 422.63654135 
    32073  
    32074 
    32075 > fitmap #27 inMap #6
    32076 
    32077 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    32078 gaussian (#6) using 3000 atoms 
    32079 average map value = 0.01953, steps = 44 
    32080 shifted from previous position = 0.0355 
    32081 rotated from previous position = 0.553 degrees 
    32082 atoms outside contour = 1511, contour level = 0.0029 
    32083  
    32084 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    32085 Cage.mrc gaussian (#6) coordinates: 
    32086 Matrix rotation and translation 
    32087 0.94168851 -0.21779536 0.25649157 366.78468020 
    32088 0.33623482 0.63850725 -0.69228220 173.79043891 
    32089 -0.01299588 0.73815559 0.67450532 158.67110367 
    32090 Axis 0.91843447 0.17302854 0.35572355 
    32091 Axis point 0.00000000 43.17052236 122.67762247 
    32092 Rotation angle (degrees) 51.14508035 
    32093 Shift along axis 423.38144847 
    32094  
    32095 
    32096 > fitmap #27 inMap #6
    32097 
    32098 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    32099 gaussian (#6) using 3000 atoms 
    32100 average map value = 0.01953, steps = 44 
    32101 shifted from previous position = 0.0272 
    32102 rotated from previous position = 0.412 degrees 
    32103 atoms outside contour = 1510, contour level = 0.0029 
    32104  
    32105 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    32106 Cage.mrc gaussian (#6) coordinates: 
    32107 Matrix rotation and translation 
    32108 0.93953384 -0.21962719 0.26275476 366.78043220 
    32109 0.34212723 0.63558863 -0.69208096 173.80679755 
    32110 -0.01500414 0.74012904 0.67229746 158.66602576 
    32111 Axis 0.91613847 0.17767339 0.35933615 
    32112 Axis point 0.00000000 44.15249879 119.05884916 
    32113 Rotation angle (degrees) 51.41243521 
    32114 Shift along axis 423.91694639 
    32115  
    32116 
    32117 > fitmap #27 inMap #6
    32118 
    32119 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    32120 gaussian (#6) using 3000 atoms 
    32121 average map value = 0.01953, steps = 44 
    32122 shifted from previous position = 0.0298 
    32123 rotated from previous position = 0.267 degrees 
    32124 atoms outside contour = 1509, contour level = 0.0029 
    32125  
    32126 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    32127 Cage.mrc gaussian (#6) coordinates: 
    32128 Matrix rotation and translation 
    32129 0.93814735 -0.22049321 0.26694997 366.75288842 
    32130 0.34583549 0.63383328 -0.69184766 173.81071375 
    32131 -0.01665406 0.74137583 0.67088339 158.68003700 
    32132 Axis 0.91466615 0.18099271 0.36142422 
    32133 Axis point 0.00000000 44.57773271 116.64247738 
    32134 Rotation angle (degrees) 51.57921689 
    32135 Shift along axis 424.26573464 
    32136  
    32137 
    32138 > fitmap #27 inMap #6
    32139 
    32140 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    32141 gaussian (#6) using 3000 atoms 
    32142 average map value = 0.01953, steps = 44 
    32143 shifted from previous position = 0.0305 
    32144 rotated from previous position = 0.168 degrees 
    32145 atoms outside contour = 1509, contour level = 0.0029 
    32146  
    32147 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    32148 Cage.mrc gaussian (#6) coordinates: 
    32149 Matrix rotation and translation 
    32150 0.93732646 -0.22104332 0.26936771 366.73295202 
    32151 0.34802072 0.63233285 -0.69212481 173.83040193 
    32152 -0.01734049 0.74249244 0.66962996 158.67650720 
    32153 Axis 0.91390575 0.18264403 0.36251544 
    32154 Axis point 0.00000000 44.83490732 115.33507825 
    32155 Rotation angle (degrees) 51.70981167 
    32156 Shift along axis 424.43112130 
    32157  
    32158 
    32159 > fitmap #27 inMap #6
    32160 
    32161 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    32162 gaussian (#6) using 3000 atoms 
    32163 average map value = 0.01953, steps = 40 
    32164 shifted from previous position = 0.0131 
    32165 rotated from previous position = 0.0733 degrees 
    32166 atoms outside contour = 1509, contour level = 0.0029 
    32167  
    32168 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    32169 Cage.mrc gaussian (#6) coordinates: 
    32170 Matrix rotation and translation 
    32171 0.93692286 -0.22148591 0.27040626 366.74192142 
    32172 0.34909609 0.63174923 -0.69211620 173.83481465 
    32173 -0.01753496 0.74285725 0.66922016 158.67040115 
    32174 Axis 0.91349144 0.18330084 0.36322746 
    32175 Axis point 0.00000000 45.07288716 114.75396515 
    32176 Rotation angle (degrees) 51.76078401 
    32177 Shift along axis 424.51312093 
    32178  
    32179 
    32180 > fitmap #27 inMap #6
    32181 
    32182 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    32183 gaussian (#6) using 3000 atoms 
    32184 average map value = 0.01953, steps = 40 
    32185 shifted from previous position = 0.0221 
    32186 rotated from previous position = 0.0406 degrees 
    32187 atoms outside contour = 1508, contour level = 0.0029 
    32188  
    32189 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    32190 Cage.mrc gaussian (#6) coordinates: 
    32191 Matrix rotation and translation 
    32192 0.93668367 -0.22184159 0.27094283 366.76066305 
    32193 0.34972966 0.63172718 -0.69181640 173.82264727 
    32194 -0.01768830 0.74276987 0.66931312 158.67046326 
    32195 Axis 0.91316788 0.18372452 0.36382650 
    32196 Axis point 0.00000000 45.27925825 114.39758722 
    32197 Rotation angle (degrees) 51.76692208 
    32198 Shift along axis 424.57805917 
    32199  
    32200 
    32201 > fitmap #27 inMap #6
    32202 
    32203 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    32204 gaussian (#6) using 3000 atoms 
    32205 average map value = 0.01953, steps = 60 
    32206 shifted from previous position = 0.0119 
    32207 rotated from previous position = 0.0423 degrees 
    32208 atoms outside contour = 1508, contour level = 0.0029 
    32209  
    32210 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    32211 Cage.mrc gaussian (#6) coordinates: 
    32212 Matrix rotation and translation 
    32213 0.93645390 -0.22196751 0.27163307 366.74937626 
    32214 0.35032711 0.63156659 -0.69166072 173.82173880 
    32215 -0.01802817 0.74286881 0.66919423 158.67535648 
    32216 Axis 0.91289870 0.18433316 0.36419397 
    32217 Axis point 0.00000000 45.34117454 113.98980109 
    32218 Rotation angle (degrees) 51.78549254 
    32219 Shift along axis 424.63474809 
    32220  
    32221 
    32222 > fitmap #27 inMap #6
    32223 
    32224 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    32225 gaussian (#6) using 3000 atoms 
    32226 average map value = 0.01953, steps = 40 
    32227 shifted from previous position = 0.022 
    32228 rotated from previous position = 0.0249 degrees 
    32229 atoms outside contour = 1509, contour level = 0.0029 
    32230  
    32231 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    32232 Cage.mrc gaussian (#6) coordinates: 
    32233 Matrix rotation and translation 
    32234 0.93641420 -0.22200474 0.27173945 366.72842419 
    32235 0.35043859 0.63123101 -0.69191055 173.81554024 
    32236 -0.01792295 0.74314286 0.66889271 158.67860446 
    32237 Axis 0.91292264 0.18427145 0.36416518 
    32238 Axis point 0.00000000 45.32820172 113.96930463 
    32239 Rotation angle (degrees) 51.81016499 
    32240 Shift along axis 424.60914647 
    32241  
    32242 
    32243 > select subtract #27
    32244 
    32245 Nothing selected 
    32246 
    32247 > select add #28
    32248 
    32249 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    32250 
    32251 > view matrix models
    32252 > #28,0.97839,-0.18605,-0.090176,407.63,0.005967,0.46138,-0.88718,240.95,0.20667,0.86747,0.45253,198.78
    32253 
    32254 > view matrix models
    32255 > #28,0.97839,-0.18605,-0.090176,404.43,0.005967,0.46138,-0.88718,242.84,0.20667,0.86747,0.45253,144.69
    32256 
    32257 > view matrix models
    32258 > #28,0.97839,-0.18605,-0.090176,373.29,0.005967,0.46138,-0.88718,255.57,0.20667,0.86747,0.45253,151.77
    32259 
    32260 > fitmap #28 inMap #6
    32261 
    32262 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#28) to map Cage.mrc
    32263 gaussian (#6) using 3000 atoms 
    32264 average map value = 0.01097, steps = 228 
    32265 shifted from previous position = 8.43 
    32266 rotated from previous position = 15.6 degrees 
    32267 atoms outside contour = 1624, contour level = 0.0029 
    32268  
    32269 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#28) relative to
    32270 Cage.mrc gaussian (#6) coordinates: 
    32271 Matrix rotation and translation 
    32272 0.96962065 -0.16470294 0.18085559 378.55526378 
    32273 0.23468402 0.41784682 -0.87768300 251.51814896 
    32274 0.06898703 0.89346347 0.44380605 157.22083100 
    32275 Axis 0.97365954 0.06149795 0.21955661 
    32276 Axis point 0.00000000 61.59450883 216.38731833 
    32277 Rotation angle (degrees) 65.44057736 
    32278 Shift along axis 418.57066763 
    32279  
    32280 
    32281 > fitmap #28 inMap #6
    32282 
    32283 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#28) to map Cage.mrc
    32284 gaussian (#6) using 3000 atoms 
    32285 average map value = 0.01097, steps = 40 
    32286 shifted from previous position = 0.0353 
    32287 rotated from previous position = 0.453 degrees 
    32288 atoms outside contour = 1623, contour level = 0.0029 
    32289  
    32290 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#28) relative to
    32291 Cage.mrc gaussian (#6) coordinates: 
    32292 Matrix rotation and translation 
    32293 0.96785016 -0.16733909 0.18778632 378.54759744 
    32294 0.24190452 0.41473614 -0.87719789 251.54205267 
    32295 0.06890772 0.89442248 0.44188252 157.21758383 
    32296 Axis 0.97226621 0.06524064 0.22459312 
    32297 Axis point 0.00000000 62.89813805 213.57096048 
    32298 Rotation angle (degrees) 65.65472577 
    32299 Shift along axis 419.76979097 
    32300  
    32301 
    32302 > fitmap #28 inMap #6
    32303 
    32304 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#28) to map Cage.mrc
    32305 gaussian (#6) using 3000 atoms 
    32306 average map value = 0.01097, steps = 40 
    32307 shifted from previous position = 0.0069 
    32308 rotated from previous position = 0.367 degrees 
    32309 atoms outside contour = 1621, contour level = 0.0029 
    32310  
    32311 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#28) relative to
    32312 Cage.mrc gaussian (#6) coordinates: 
    32313 Matrix rotation and translation 
    32314 0.96642648 -0.16912838 0.19343072 378.53988770 
    32315 0.24760643 0.41192127 -0.87693325 251.52922671 
    32316 0.06863607 0.89538620 0.43996890 157.22179321 
    32317 Axis 0.97117290 0.06838338 0.22835700 
    32318 Axis point 0.00000000 63.82158988 211.22031347 
    32319 Rotation angle (degrees) 65.84802671 
    32320 Shift along axis 420.73079339 
    32321  
    32322 
    32323 > select subtract #28
    32324 
    32325 Nothing selected 
    32326 
    32327 > select add #29
    32328 
    32329 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    32330 
    32331 > view matrix models
    32332 > #29,0.97839,-0.18605,-0.090176,373.89,0.005967,0.46138,-0.88718,324.26,0.20667,0.86747,0.45253,184.36
    32333 
    32334 > view matrix models
    32335 > #29,0.97839,-0.18605,-0.090176,371.23,0.005967,0.46138,-0.88718,319.21,0.20667,0.86747,0.45253,146.58
    32336 
    32337 > fitmap #29 inMap #6
    32338 
    32339 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#29) to map Cage.mrc
    32340 gaussian (#6) using 3000 atoms 
    32341 average map value = 0.02245, steps = 504 
    32342 shifted from previous position = 17.7 
    32343 rotated from previous position = 33.6 degrees 
    32344 atoms outside contour = 1392, contour level = 0.0029 
    32345  
    32346 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#29) relative to
    32347 Cage.mrc gaussian (#6) coordinates: 
    32348 Matrix rotation and translation 
    32349 0.84135778 -0.47082416 0.26540854 375.49868125 
    32350 0.51855821 0.56476964 -0.64197557 312.43852446 
    32351 0.15236293 0.67776092 0.71932307 162.31677833 
    32352 Axis 0.79824961 0.06837624 0.59843317 
    32353 Axis point 0.00000000 244.30686457 276.50745024 
    32354 Rotation angle (degrees) 55.75552324 
    32355 Shift along axis 418.24078842 
    32356  
    32357 
    32358 > fitmap #29 inMap #6
    32359 
    32360 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#29) to map Cage.mrc
    32361 gaussian (#6) using 3000 atoms 
    32362 average map value = 0.02245, steps = 44 
    32363 shifted from previous position = 0.0341 
    32364 rotated from previous position = 0.305 degrees 
    32365 atoms outside contour = 1395, contour level = 0.0029 
    32366  
    32367 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#29) relative to
    32368 Cage.mrc gaussian (#6) coordinates: 
    32369 Matrix rotation and translation 
    32370 0.83886247 -0.47297828 0.26944629 375.52410862 
    32371 0.52301181 0.56310945 -0.63981746 312.40990588 
    32372 0.15089201 0.67764245 0.71974461 162.31258260 
    32373 Axis 0.79565230 0.07159837 0.60150734 
    32374 Axis point 0.00000000 245.45134357 273.81259008 
    32375 Rotation angle (degrees) 55.88482651 
    32376 Shift along axis 418.78687207 
    32377  
    32378 
    32379 > fitmap #29 inMap #6
    32380 
    32381 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#29) to map Cage.mrc
    32382 gaussian (#6) using 3000 atoms 
    32383 average map value = 0.02245, steps = 40 
    32384 shifted from previous position = 0.0681 
    32385 rotated from previous position = 0.151 degrees 
    32386 atoms outside contour = 1395, contour level = 0.0029 
    32387  
    32388 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#29) relative to
    32389 Cage.mrc gaussian (#6) coordinates: 
    32390 Matrix rotation and translation 
    32391 0.83767841 -0.47428935 0.27082188 375.55000338 
    32392 0.52509783 0.56299504 -0.63820753 312.34592944 
    32393 0.15022366 0.67682065 0.72065710 162.32948341 
    32394 Axis 0.79405835 0.07282128 0.60346367 
    32395 Axis point 0.00000000 246.32151465 272.94625527 
    32396 Rotation angle (degrees) 55.89818138 
    32397 Shift along axis 418.91399034 
    32398  
    32399 
    32400 > select subtract #29
    32401 
    32402 Nothing selected 
    32403 
    32404 > select add #30
    32405 
    32406 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    32407 
    32408 > view matrix models
    32409 > #30,0.97839,-0.18605,-0.090176,357.3,0.005967,0.46138,-0.88718,391.81,0.20667,0.86747,0.45253,164.46
    32410 
    32411 > view matrix models
    32412 > #30,0.97839,-0.18605,-0.090176,357.25,0.005967,0.46138,-0.88718,391.27,0.20667,0.86747,0.45253,153.12
    32413 
    32414 > fitmap #30 inMap #6
    32415 
    32416 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#30) to map Cage.mrc
    32417 gaussian (#6) using 3000 atoms 
    32418 average map value = 0.009582, steps = 332 
    32419 shifted from previous position = 9.07 
    32420 rotated from previous position = 32.1 degrees 
    32421 atoms outside contour = 1626, contour level = 0.0029 
    32422  
    32423 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#30) relative to
    32424 Cage.mrc gaussian (#6) coordinates: 
    32425 Matrix rotation and translation 
    32426 0.83681149 -0.36147699 0.41119451 360.83544897 
    32427 0.53272880 0.36436984 -0.76382894 387.06992970 
    32428 0.12627971 0.85823598 0.49747807 160.65068025 
    32429 Axis 0.86556304 0.15203567 0.47716431 
    32430 Axis point 0.00000000 205.96509663 246.21483287 
    32431 Rotation angle (degrees) 69.55367780 
    32432 Shift along axis 447.83103400 
    32433  
    32434 
    32435 > fitmap #30 inMap #6
    32436 
    32437 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#30) to map Cage.mrc
    32438 gaussian (#6) using 3000 atoms 
    32439 average map value = 0.009584, steps = 44 
    32440 shifted from previous position = 0.0295 
    32441 rotated from previous position = 0.641 degrees 
    32442 atoms outside contour = 1626, contour level = 0.0029 
    32443  
    32444 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#30) relative to
    32445 Cage.mrc gaussian (#6) coordinates: 
    32446 Matrix rotation and translation 
    32447 0.83128043 -0.36359286 0.42044390 360.84323222 
    32448 0.54145412 0.35861978 -0.76040732 387.07745863 
    32449 0.12569918 0.85976281 0.49498246 160.66997286 
    32450 Axis 0.86221528 0.15685600 0.48164407 
    32451 Axis point 0.00000000 206.86543815 241.88919034 
    32452 Rotation angle (degrees) 69.97431665 
    32453 Shift along axis 449.22570860 
    32454  
    32455 
    32456 > select subtract #30
    32457 
    32458 Nothing selected 
    32459 
    32460 > select add #31
    32461 
    32462 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    32463 
    32464 > view matrix models
    32465 > #31,0.97839,-0.18605,-0.090176,333.18,0.005967,0.46138,-0.88718,457.94,0.20667,0.86747,0.45253,182.62
    32466 
    32467 > view matrix models
    32468 > #31,0.97839,-0.18605,-0.090176,313.86,0.005967,0.46138,-0.88718,445.94,0.20667,0.86747,0.45253,147.94
    32469 
    32470 > fitmap #31 inMap #6
    32471 
    32472 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#31) to map Cage.mrc
    32473 gaussian (#6) using 3000 atoms 
    32474 average map value = 0.01593, steps = 480 
    32475 shifted from previous position = 21.8 
    32476 rotated from previous position = 24 degrees 
    32477 atoms outside contour = 1531, contour level = 0.0029 
    32478  
    32479 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#31) relative to
    32480 Cage.mrc gaussian (#6) coordinates: 
    32481 Matrix rotation and translation 
    32482 0.95756860 -0.26229008 0.11944153 332.73523687 
    32483 0.27236315 0.68805016 -0.67261081 443.20274564 
    32484 0.09423738 0.67660246 0.73029338 158.21029701 
    32485 Axis 0.92952734 0.01736415 0.36834414 
    32486 Axis point 0.00000000 193.48951283 559.50287744 
    32487 Rotation angle (degrees) 46.53146878 
    32488 Shift along axis 375.25817671 
    32489  
    32490 
    32491 > fitmap #31 inMap #6
    32492 
    32493 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#31) to map Cage.mrc
    32494 gaussian (#6) using 3000 atoms 
    32495 average map value = 0.01593, steps = 48 
    32496 shifted from previous position = 0.034 
    32497 rotated from previous position = 0.685 degrees 
    32498 atoms outside contour = 1532, contour level = 0.0029 
    32499  
    32500 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#31) relative to
    32501 Cage.mrc gaussian (#6) coordinates: 
    32502 Matrix rotation and translation 
    32503 0.95461114 -0.26842846 0.12908810 332.73618752 
    32504 0.28320888 0.68376816 -0.67249820 443.21906684 
    32505 0.09225133 0.67853317 0.72875403 158.22434078 
    32506 Axis 0.92550584 0.02523453 0.37789173 
    32507 Axis point 0.00000000 198.34203428 551.57767550 
    32508 Rotation angle (degrees) 46.87701264 
    32509 Shift along axis 378.92538118 
    32510  
    32511 
    32512 > fitmap #31 inMap #6
    32513 
    32514 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#31) to map Cage.mrc
    32515 gaussian (#6) using 3000 atoms 
    32516 average map value = 0.01593, steps = 48 
    32517 shifted from previous position = 0.0322 
    32518 rotated from previous position = 0.679 degrees 
    32519 atoms outside contour = 1532, contour level = 0.0029 
    32520  
    32521 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#31) relative to
    32522 Cage.mrc gaussian (#6) coordinates: 
    32523 Matrix rotation and translation 
    32524 0.95152123 -0.27459898 0.13857402 332.73547423 
    32525 0.29399069 0.67949479 -0.67220258 443.23453555 
    32526 0.09042582 0.68035449 0.72728325 158.23565836 
    32527 Axis 0.92136060 0.03279851 0.38732274 
    32528 Axis point 0.00000000 203.12466892 543.86883226 
    32529 Rotation angle (degrees) 47.22277192 
    32530 Shift along axis 382.39505641 
    32531  
    32532 
    32533 > color #23 #72727259 models
    32534 
    32535 > surface dust #23 size 12.6
    32536 
    32537 > volume gaussian #23 sDev 3
    32538 
    32539 Opened 4x-FlgY-PflA.mrc gaussian as #32, grid size 220,250,200, pixel
    32540 2.15,2.15,2.15, shown at step 1, values float32 
    32541 
    32542 > close #32
    32543 
    32544 > volume gaussian #23 sDev 2
    32545 
    32546 Opened 4x-FlgY-PflA.mrc gaussian as #32, grid size 220,250,200, pixel
    32547 2.15,2.15,2.15, shown at step 1, values float32 
    32548 
    32549 > close #24
    32550 
    32551 > surface dust #32 size 50
    32552 
    32553 > color #32 #72727259 models
    32554 
    32555 > show #22 models
    32556 
    32557 > show #20 models
    32558 
    32559 > show #18 models
    32560 
    32561 > show #!19 models
    32562 
    32563 > show #16 models
    32564 
    32565 > split #16
    32566 
    32567 Split FlgY-PflA-PflB-comp (#16) into 35 models 
    32568 Chain information for FlgY-PflA-PflB-comp A #16.1 
    32569 --- 
    32570 Chain | Description 
    32571 A | No description available 
    32572  
    32573 Chain information for FlgY-PflA-PflB-comp B #16.2 
    32574 --- 
    32575 Chain | Description 
    32576 B | No description available 
    32577  
    32578 Chain information for FlgY-PflA-PflB-comp C #16.3 
    32579 --- 
    32580 Chain | Description 
    32581 C | No description available 
    32582  
    32583 Chain information for FlgY-PflA-PflB-comp D #16.4 
    32584 --- 
    32585 Chain | Description 
    32586 D | No description available 
    32587  
    32588 Chain information for FlgY-PflA-PflB-comp E #16.5 
    32589 --- 
    32590 Chain | Description 
    32591 E | No description available 
    32592  
    32593 Chain information for FlgY-PflA-PflB-comp F #16.6 
    32594 --- 
    32595 Chain | Description 
    32596 F | No description available 
    32597  
    32598 Chain information for FlgY-PflA-PflB-comp G #16.7 
    32599 --- 
    32600 Chain | Description 
    32601 G | No description available 
    32602  
    32603 Chain information for FlgY-PflA-PflB-comp H #16.8 
    32604 --- 
    32605 Chain | Description 
    32606 H | No description available 
    32607  
    32608 Chain information for FlgY-PflA-PflB-comp I #16.9 
    32609 --- 
    32610 Chain | Description 
    32611 I | No description available 
    32612  
    32613 Chain information for FlgY-PflA-PflB-comp J #16.10 
    32614 --- 
    32615 Chain | Description 
    32616 J | No description available 
    32617  
    32618 Chain information for FlgY-PflA-PflB-comp K #16.11 
    32619 --- 
    32620 Chain | Description 
    32621 K | No description available 
    32622  
    32623 Chain information for FlgY-PflA-PflB-comp L #16.12 
    32624 --- 
    32625 Chain | Description 
    32626 L | No description available 
    32627  
    32628 Chain information for FlgY-PflA-PflB-comp M #16.13 
    32629 --- 
    32630 Chain | Description 
    32631 M | No description available 
    32632  
    32633 Chain information for FlgY-PflA-PflB-comp N #16.14 
    32634 --- 
    32635 Chain | Description 
    32636 N | No description available 
    32637  
    32638 Chain information for FlgY-PflA-PflB-comp O #16.15 
    32639 --- 
    32640 Chain | Description 
    32641 O | No description available 
    32642  
    32643 Chain information for FlgY-PflA-PflB-comp P #16.16 
    32644 --- 
    32645 Chain | Description 
    32646 P | No description available 
    32647  
    32648 Chain information for FlgY-PflA-PflB-comp Q #16.17 
    32649 --- 
    32650 Chain | Description 
    32651 Q | No description available 
    32652  
    32653 Chain information for FlgY-PflA-PflB-comp R #16.18 
    32654 --- 
    32655 Chain | Description 
    32656 R | No description available 
    32657  
    32658 Chain information for FlgY-PflA-PflB-comp S #16.19 
    32659 --- 
    32660 Chain | Description 
    32661 S | No description available 
    32662  
    32663 Chain information for FlgY-PflA-PflB-comp T #16.20 
    32664 --- 
    32665 Chain | Description 
    32666 T | No description available 
    32667  
    32668 Chain information for FlgY-PflA-PflB-comp U #16.21 
    32669 --- 
    32670 Chain | Description 
    32671 U | No description available 
    32672  
    32673 Chain information for FlgY-PflA-PflB-comp V #16.22 
    32674 --- 
    32675 Chain | Description 
    32676 V | No description available 
    32677  
    32678 Chain information for FlgY-PflA-PflB-comp W #16.23 
    32679 --- 
    32680 Chain | Description 
    32681 W | No description available 
    32682  
    32683 Chain information for FlgY-PflA-PflB-comp X #16.24 
    32684 --- 
    32685 Chain | Description 
    32686 X | No description available 
    32687  
    32688 Chain information for FlgY-PflA-PflB-comp Y #16.25 
    32689 --- 
    32690 Chain | Description 
    32691 Y | No description available 
    32692  
    32693 Chain information for FlgY-PflA-PflB-comp Z #16.26 
    32694 --- 
    32695 Chain | Description 
    32696 Z | No description available 
    32697  
    32698 Chain information for FlgY-PflA-PflB-comp a #16.27 
    32699 --- 
    32700 Chain | Description 
    32701 a | No description available 
    32702  
    32703 Chain information for FlgY-PflA-PflB-comp b #16.28 
    32704 --- 
    32705 Chain | Description 
    32706 b | No description available 
    32707  
    32708 Chain information for FlgY-PflA-PflB-comp c #16.29 
    32709 --- 
    32710 Chain | Description 
    32711 c | No description available 
    32712  
    32713 Chain information for FlgY-PflA-PflB-comp d #16.30 
    32714 --- 
    32715 Chain | Description 
    32716 d | No description available 
    32717  
    32718 Chain information for FlgY-PflA-PflB-comp e #16.31 
    32719 --- 
    32720 Chain | Description 
    32721 e | No description available 
    32722  
    32723 Chain information for FlgY-PflA-PflB-comp f #16.32 
    32724 --- 
    32725 Chain | Description 
    32726 f | No description available 
    32727  
    32728 Chain information for FlgY-PflA-PflB-comp g #16.33 
    32729 --- 
    32730 Chain | Description 
    32731 g | No description available 
    32732  
    32733 Chain information for FlgY-PflA-PflB-comp h #16.34 
    32734 --- 
    32735 Chain | Description 
    32736 h | No description available 
    32737  
    32738 Chain information for FlgY-PflA-PflB-comp i #16.35 
    32739 --- 
    32740 Chain | Description 
    32741 i | No description available 
    32742  
    32743 
    32744 > hide #18 models
    32745 
    32746 > hide #!19 models
    32747 
    32748 > hide #20 models
    32749 
    32750 > hide #22 models
    32751 
    32752 > hide #16.1 models
    32753 
    32754 > show #16.1 models
    32755 
    32756 > show #!10 models
    32757 
    32758 > hide #!10 models
    32759 
    32760 > show #!10 models
    32761 
    32762 > hide #!10 models
    32763 
    32764 > show #!10 models
    32765 
    32766 > hide #!10 models
    32767 
    32768 > show #!5 models
    32769 
    32770 > hide #16.1 models
    32771 
    32772 > show #16.1 models
    32773 
    32774 > hide #16.2 models
    32775 
    32776 > show #16.2 models
    32777 
    32778 > hide #16.2 models
    32779 
    32780 > hide #16.3 models
    32781 
    32782 > show #16.3 models
    32783 
    32784 > hide #16.4 models
    32785 
    32786 > hide #16.5 models
    32787 
    32788 > show #16.5 models
    32789 
    32790 > hide #16.5 models
    32791 
    32792 > hide #16.6 models
    32793 
    32794 > show #16.6 models
    32795 
    32796 > hide #16.6 models
    32797 
    32798 > hide #16.7 models
    32799 
    32800 > show #16.7 models
    32801 
    32802 > hide #16.8 models
    32803 
    32804 > hide #16.9 models
    32805 
    32806 > show #16.9 models
    32807 
    32808 > hide #16.10 models
    32809 
    32810 > show #16.10 models
    32811 
    32812 > hide #16.12 models
    32813 
    32814 > show #16.12 models
    32815 
    32816 > hide #16.13 models
    32817 
    32818 > show #16.13 models
    32819 
    32820 > hide #16.14 models
    32821 
    32822 > show #16.14 models
    32823 
    32824 > hide #16.15 models
    32825 
    32826 > show #16.15 models
    32827 
    32828 > hide #16.16 models
    32829 
    32830 > show #16.16 models
    32831 
    32832 > hide #16.16 models
    32833 
    32834 > hide #16.17 models
    32835 
    32836 > hide #16.18 models
    32837 
    32838 > show #16.18 models
    32839 
    32840 > hide #16.18 models
    32841 
    32842 > hide #16.19 models
    32843 
    32844 > show #16.19 models
    32845 
    32846 > hide #16.20 models
    32847 
    32848 > show #16.20 models
    32849 
    32850 > hide #16.21 models
    32851 
    32852 > show #16.21 models
    32853 
    32854 > hide #16.22 models
    32855 
    32856 > show #16.22 models
    32857 
    32858 > hide #16.23 models
    32859 
    32860 > show #16.23 models
    32861 
    32862 > hide #16.24 models
    32863 
    32864 > show #16.24 models
    32865 
    32866 > hide #16.24 models
    32867 
    32868 > hide #16.25 models
    32869 
    32870 > hide #16.26 models
    32871 
    32872 > hide #16.27 models
    32873 
    32874 > hide #16.28 models
    32875 
    32876 > hide #16.29 models
    32877 
    32878 Drag select of 369 residues 
    32879 
    32880 > hide sel cartoons
    32881 
    32882 > show sel cartoons
    32883 
    32884 > select clear
    32885 
    32886 Drag select of 314 residues 
    32887 
    32888 > hide sel cartoons
    32889 
    32890 Drag select of 42 residues 
    32891 
    32892 > hide sel cartoons
    32893 
    32894 Drag select of 3 residues 
    32895 Drag select of 75 residues 
    32896 
    32897 > hide sel cartoons
    32898 
    32899 Drag select of 5 PflB-cage.mrc gaussian , 12 residues 
    32900 
    32901 > hide sel cartoons
    32902 
    32903 Drag select of 10 residues 
    32904 
    32905 > hide sel cartoons
    32906 
    32907 > select add #16.1/A:318
    32908 
    32909 3679 atoms, 6 bonds, 457 residues, 1 model selected 
    32910 
    32911 > select add #16.1/A:347
    32912 
    32913 3687 atoms, 13 bonds, 458 residues, 1 model selected 
    32914 
    32915 > select add #16.1/A:346
    32916 
    32917 3695 atoms, 20 bonds, 459 residues, 1 model selected 
    32918 
    32919 > select add #16.1/A:345
    32920 
    32921 3703 atoms, 27 bonds, 460 residues, 1 model selected 
    32922 
    32923 > select add #16.1/A:309
    32924 
    32925 3711 atoms, 34 bonds, 461 residues, 1 model selected 
    32926 
    32927 > hide sel cartoons
    32928 
    32929 > select add #16.1/A:780
    32930 
    32931 3722 atoms, 45 bonds, 462 residues, 1 model selected 
    32932 
    32933 > hide sel cartoons
    32934 
    32935 > hide #!5 models
    32936 
    32937 Drag select of 12 residues 
    32938 
    32939 > hide sel cartoons
    32940 
    32941 > select add #16.1
    32942 
    32943 5455 atoms, 5553 bonds, 678 residues, 1 model selected 
    32944 
    32945 > select subtract #16.1
    32946 
    32947 Nothing selected 
    32948 
    32949 > select add #16.1
    32950 
    32951 5455 atoms, 5553 bonds, 678 residues, 1 model selected 
    32952 
    32953 > show sel cartoons
    32954 
    32955 > select clear
    32956 
    32957 > show #!5 models
    32958 
    32959 > show #!8 models
    32960 
    32961 > color #8 #72727259 models
    32962 
    32963 > show #!19 models
    32964 
    32965 > color #19 #5da36dff models
    32966 
    32967 > select add #16.35
    32968 
    32969 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    32970 
    32971 > select add #16.33
    32972 
    32973 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    32974 
    32975 > select add #16.31
    32976 
    32977 3705 atoms, 3723 bonds, 465 residues, 3 models selected 
    32978 
    32979 > select add #16.3
    32980 
    32981 4584 atoms, 4617 bonds, 574 residues, 4 models selected 
    32982 
    32983 > select subtract #16.3
    32984 
    32985 3705 atoms, 3723 bonds, 465 residues, 3 models selected 
    32986 
    32987 > select add #16.7
    32988 
    32989 9160 atoms, 9276 bonds, 1143 residues, 4 models selected 
    32990 
    32991 > select subtract #16.7
    32992 
    32993 3705 atoms, 3723 bonds, 465 residues, 3 models selected 
    32994 
    32995 > select add #16.23
    32996 
    32997 4940 atoms, 4964 bonds, 620 residues, 4 models selected 
    32998 
    32999 > color sel magenta
    33000 
    33001 The cached device pixel ratio value was stale on window expose. Please file a
    33002 QTBUG which explains how to reproduce. 
    33003 
    33004 > select clear
    33005 
    33006 > select add #16.22
    33007 
    33008 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    33009 
    33010 > select add #16.30
    33011 
    33012 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    33013 
    33014 > select add #16.32
    33015 
    33016 3705 atoms, 3723 bonds, 465 residues, 3 models selected 
    33017 
    33018 > select add #16.34
    33019 
    33020 4940 atoms, 4964 bonds, 620 residues, 4 models selected 
    33021 
    33022 > color sel #e9cdeaff
    33023 
    33024 > select clear
    33025 
    33026 > select add #16.31
    33027 
    33028 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    33029 
    33030 > select add #16.33
    33031 
    33032 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    33033 
    33034 > select add #16.35
    33035 
    33036 3705 atoms, 3723 bonds, 465 residues, 3 models selected 
    33037 
    33038 > select add #16.23
    33039 
    33040 4940 atoms, 4964 bonds, 620 residues, 4 models selected 
    33041 
    33042 > color sel orchid models.
    33043 
    33044 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
    33045 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword 
    33046 
    33047 > color sel orchid models.
    33048 
    33049 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
    33050 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword 
    33051 
    33052 > color sel orchid models.
    33053 
    33054 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
    33055 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword 
    33056 
    33057 > color sel orchid models
    33058 
    33059 > select clear
    33060 
    33061 > select add #16.19
    33062 
    33063 5071 atoms, 5156 bonds, 621 residues, 1 model selected 
    33064 
    33065 > select add #16.20
    33066 
    33067 10142 atoms, 10312 bonds, 1242 residues, 2 models selected 
    33068 
    33069 > select add #16.21
    33070 
    33071 15213 atoms, 15468 bonds, 1863 residues, 3 models selected 
    33072 
    33073 > select add #16.15
    33074 
    33075 20284 atoms, 20624 bonds, 2484 residues, 4 models selected 
    33076 
    33077 > color sel #ca4949ff
    33078 
    33079 > select clear
    33080 
    33081 > select add #16.9
    33082 
    33083 5455 atoms, 5553 bonds, 678 residues, 1 model selected 
    33084 
    33085 > select subtract #16.9
    33086 
    33087 Nothing selected 
    33088 
    33089 > select add #16.10
    33090 
    33091 879 atoms, 894 bonds, 109 residues, 1 model selected 
    33092 
    33093 > select add #16.11
    33094 
    33095 6334 atoms, 6447 bonds, 787 residues, 2 models selected 
    33096 
    33097 > select subtract #16.11
    33098 
    33099 879 atoms, 894 bonds, 109 residues, 1 model selected 
    33100 
    33101 > select add #16.12
    33102 
    33103 1758 atoms, 1788 bonds, 218 residues, 2 models selected 
    33104 
    33105 > select add #16.13
    33106 
    33107 7213 atoms, 7341 bonds, 896 residues, 3 models selected 
    33108 
    33109 > select subtract #16.13
    33110 
    33111 1758 atoms, 1788 bonds, 218 residues, 2 models selected 
    33112 
    33113 > select add #16.14
    33114 
    33115 2637 atoms, 2682 bonds, 327 residues, 3 models selected 
    33116 
    33117 > select add #16.3
    33118 
    33119 3516 atoms, 3576 bonds, 436 residues, 4 models selected 
    33120 
    33121 > color sel #ca4949ff
    33122 
    33123 > select subtract #16.3
    33124 
    33125 2637 atoms, 2682 bonds, 327 residues, 3 models selected 
    33126 
    33127 > select subtract #16.10
    33128 
    33129 1758 atoms, 1788 bonds, 218 residues, 2 models selected 
    33130 
    33131 > select subtract #16.12
    33132 
    33133 879 atoms, 894 bonds, 109 residues, 1 model selected 
    33134 
    33135 > select add #16.1
    33136 
    33137 6334 atoms, 6447 bonds, 787 residues, 2 models selected 
    33138 
    33139 > select subtract #16.14
    33140 
    33141 5455 atoms, 5553 bonds, 678 residues, 1 model selected 
    33142 
    33143 > select add #16.9
    33144 
    33145 10910 atoms, 11106 bonds, 1356 residues, 2 models selected 
    33146 
    33147 > select subtract #16.9
    33148 
    33149 5455 atoms, 5553 bonds, 678 residues, 1 model selected 
    33150 
    33151 > select add #16.10
    33152 
    33153 6334 atoms, 6447 bonds, 787 residues, 2 models selected 
    33154 
    33155 > select subtract #16.10
    33156 
    33157 5455 atoms, 5553 bonds, 678 residues, 1 model selected 
    33158 
    33159 > select add #16.11
    33160 
    33161 10910 atoms, 11106 bonds, 1356 residues, 2 models selected 
    33162 
    33163 > select subtract #16.11
    33164 
    33165 5455 atoms, 5553 bonds, 678 residues, 1 model selected 
    33166 
    33167 > select add #16.11
    33168 
    33169 10910 atoms, 11106 bonds, 1356 residues, 2 models selected 
    33170 
    33171 > select add #16.7
    33172 
    33173 16365 atoms, 16659 bonds, 2034 residues, 3 models selected 
    33174 
    33175 > color sel #8c3092ff
    33176 
    33177 > select add #16.9
    33178 
    33179 21820 atoms, 22212 bonds, 2712 residues, 4 models selected 
    33180 
    33181 > select clear
    33182 
    33183 > select add #16.9
    33184 
    33185 5455 atoms, 5553 bonds, 678 residues, 1 model selected 
    33186 
    33187 > select add #16.13
    33188 
    33189 10910 atoms, 11106 bonds, 1356 residues, 2 models selected 
    33190 
    33191 > color sel magenta
    33192 
    33193 > select clear
    33194 
    33195 > select add #25
    33196 
    33197 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    33198 
    33199 > select add #26
    33200 
    33201 6000 atoms, 6102 bonds, 728 residues, 2 models selected 
    33202 
    33203 > select add #27
    33204 
    33205 9000 atoms, 9153 bonds, 1092 residues, 3 models selected 
    33206 
    33207 > select add #28
    33208 
    33209 12000 atoms, 12204 bonds, 1456 residues, 4 models selected 
    33210 
    33211 > select add #29
    33212 
    33213 15000 atoms, 15255 bonds, 1820 residues, 5 models selected 
    33214 
    33215 > select add #30
    33216 
    33217 18000 atoms, 18306 bonds, 2184 residues, 6 models selected 
    33218 
    33219 > select add #31
    33220 
    33221 21000 atoms, 21357 bonds, 2548 residues, 7 models selected 
    33222 
    33223 > color sel #4a9ed2ff
    33224 
    33225 > ui tool show "Side View"
    33226 
    33227 > color sel #52cdd6ff
    33228 
    33229 > color sel #4a9ed2ff
    33230 
    33231 > select clear
    33232 
    33233 > select add #25
    33234 
    33235 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    33236 
    33237 > select add #26
    33238 
    33239 6000 atoms, 6102 bonds, 728 residues, 2 models selected 
    33240 
    33241 > select add #27
    33242 
    33243 9000 atoms, 9153 bonds, 1092 residues, 3 models selected 
    33244 
    33245 > select add #28
    33246 
    33247 12000 atoms, 12204 bonds, 1456 residues, 4 models selected 
    33248 
    33249 > select add #29
    33250 
    33251 15000 atoms, 15255 bonds, 1820 residues, 5 models selected 
    33252 
    33253 > select add #30
    33254 
    33255 18000 atoms, 18306 bonds, 2184 residues, 6 models selected 
    33256 
    33257 > select add #31
    33258 
    33259 21000 atoms, 21357 bonds, 2548 residues, 7 models selected 
    33260 Alignment identifier is 1 
    33261 Alignment identifier is 2 
    33262 
    33263 > select #25/A:175 #26/A:175 #27/A:175 #28/A:175 #29/A:175 #30/A:175 #31/A:175
    33264 
    33265 84 atoms, 77 bonds, 7 residues, 7 models selected 
    33266 
    33267 > select #25/A:167-175 #26/A:167-175 #27/A:167-175 #28/A:167-175 #29/A:167-175
    33268 > #30/A:167-175 #31/A:167-175
    33269 
    33270 483 atoms, 483 bonds, 63 residues, 7 models selected 
    33271 . [ID: 1] region 7 chains [167-175] RMSD: 212.124 
    33272  
    33273 
    33274 > select #25/B:1 #26/B:1 #27/B:1 #28/B:1 #29/B:1 #30/B:1 #31/B:1
    33275 
    33276 56 atoms, 49 bonds, 7 residues, 7 models selected 
    33277 
    33278 > select #25/B:1-20 #26/B:1-20 #27/B:1-20 #28/B:1-20 #29/B:1-20 #30/B:1-20
    33279 > #31/B:1-20
    33280 
    33281 1099 atoms, 1099 bonds, 140 residues, 7 models selected 
    33282 . [ID: 2] region 7 chains [1-20] RMSD: 202.239 
    33283  
    33284 
    33285 > select #25/B:27 #26/B:27 #27/B:27 #28/B:27 #29/B:27 #30/B:27 #31/B:27
    33286 
    33287 56 atoms, 49 bonds, 7 residues, 7 models selected 
    33288 
    33289 > select #25/B:1-27 #26/B:1-27 #27/B:1-27 #28/B:1-27 #29/B:1-27 #30/B:1-27
    33290 > #31/B:1-27
    33291 
    33292 1498 atoms, 1498 bonds, 189 residues, 7 models selected 
    33293 . [ID: 2] region 7 chains [1-27] RMSD: 201.751 
    33294  
    33295 
    33296 > hide sel surfaces
    33297 
    33298 > hide sel cartoons
    33299 
    33300 > select #25/B:28 #26/B:28 #27/B:28 #28/B:28 #29/B:28 #30/B:28 #31/B:28
    33301 
    33302 56 atoms, 49 bonds, 7 residues, 7 models selected 
    33303 
    33304 > select #25/B:28-189 #26/B:28-189 #27/B:28-189 #28/B:28-189 #29/B:28-189
    33305 > #30/B:28-189 #31/B:28-189
    33306 
    33307 9296 atoms, 9436 bonds, 1134 residues, 7 models selected 
    33308 . [ID: 2] region 7 chains [28-189] RMSD: 205.519 
    33309  
    33310 
    33311 > select #25/A:1 #26/A:1 #27/A:1 #28/A:1 #29/A:1 #30/A:1 #31/A:1
    33312 
    33313 56 atoms, 49 bonds, 7 residues, 7 models selected 
    33314 
    33315 > select #25/A #26/A #27/A #28/A #29/A #30/A #31/A
    33316 
    33317 10206 atoms, 10416 bonds, 1225 residues, 7 models selected 
    33318 . [ID: 1] region 7 chains [1-175] RMSD: 207.285 
    33319  
    33320 
    33321 > show sel surfaces
    33322 
    33323 > select clear
    33324 
    33325 > select add #19
    33326 
    33327 112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 2 models selected 
    33328 
    33329 > show #!2 models
    33330 
    33331 > select clear
    33332 
    33333 > view orient
    33334 
    33335 Drag select of 8 MS-ring.mrc gaussian , 6282 residues, 19 pseudobonds, 32
    33336 4x-FlgY-PflA.mrc gaussian 
    33337 
    33338 > hide sel cartoons
    33339 
    33340 Drag select of 8 residues 
    33341 
    33342 > hide sel cartoons
    33343 
    33344 > select clear
    33345 
    33346 > volume gaussian #1.1 sDev 5
    33347 
    33348 Opened IM.mrc gaussian as #24, grid size 220,250,200, pixel 2.15,2.15,2.15,
    33349 shown at step 1, values float32 
    33350 
    33351 > hide #!2 models
    33352 
    33353 > volume #24 level 0.006253
    33354 
    33355 > color #24 #797979ff models
    33356 
    33357 > color #24 #5e5e5eff models
    33358 
    33359 > color #24 #919191ff models
    33360 
    33361 > color #24 #797979ff models
    33362 
    33363 > color #24 darkgrey models
    33364 
    33365 > color #24 #424242ff models
    33366 
    33367 > color #24 #797979ff models
    33368 
    33369 > color #24 #d6d6d6ff models
    33370 
    33371 > color #24 #919191ff models
    33372 
    33373 > select add #19
    33374 
    33375 112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 2 models selected 
    33376 
    33377 > show sel surfaces
    33378 
    33379 > select clear
    33380 
    33381 > view orient
    33382 
    33383 Drag select of Hp-FliF-comp_0 SES surface, 166552 of 308174 triangles, Hp-
    33384 FliF-comp_1 SES surface, Hp-FliF-comp_2 SES surface, Hp-FliF-comp_3 SES
    33385 surface, Hp-FliF-comp_4 SES surface, Hp-FliF-comp_5 SES surface, Hp-FliF-
    33386 comp_6 SES surface, Hp-FliF-comp_7 SES surface, 301470 of 307576 triangles,
    33387 Hp-FliF-comp_8 SES surface, 281198 of 307462 triangles, Hp-FliF-comp_9 SES
    33388 surface, 248114 of 307956 triangles, Hp-FliF-comp_AA SES surface, 72054 of
    33389 307878 triangles, Hp-FliF-comp_AP SES surface, 860 of 308526 triangles, Hp-
    33390 FliF-comp_AQ SES surface, 11313 of 307878 triangles, Hp-FliF-comp_AR SES
    33391 surface, 26305 of 308154 triangles, Hp-FliF-comp_AS SES surface, 45567 of
    33392 307454 triangles, Hp-FliF-comp_B SES surface, 22032 of 102586 triangles, Hp-
    33393 FliF-comp_C SES surface, Hp-FliF-comp_D SES surface, Hp-FliF-comp_E SES
    33394 surface, Hp-FliF-comp_F SES surface, Hp-FliF-comp_G SES surface, Hp-FliF-
    33395 comp_H SES surface, Hp-FliF-comp_I SES surface, Hp-FliF-comp_J SES surface,
    33396 Hp-FliF-comp_K SES surface, 49177 of 102380 triangles, Hp-FliF-comp_V SES
    33397 surface, 47719 of 126200 triangles, Hp-FliF-comp_W SES surface, Hp-FliF-comp_X
    33398 SES surface, Hp-FliF-comp_Y SES surface, Hp-FliF-comp_Z SES surface, Hp-FliF-
    33399 comp_a SES surface, Hp-FliF-comp_b SES surface, Hp-FliF-comp_c SES surface,
    33400 Hp-FliF-comp_d SES surface, 121510 of 126402 triangles, Hp-FliF-comp_e SES
    33401 surface, 62271 of 126996 triangles, Hp-FliF-comp_f SES surface, 3912 of 126310
    33402 triangles, Hp-FliF-comp_q SES surface, 66882 of 307794 triangles, Hp-FliF-
    33403 comp_r SES surface, 140106 of 308144 triangles, Hp-FliF-comp_s SES surface,
    33404 221141 of 307492 triangles, Hp-FliF-comp_t SES surface, 307651 of 308006
    33405 triangles, Hp-FliF-comp_u SES surface, Hp-FliF-comp_v SES surface, Hp-FliF-
    33406 comp_w SES surface, Hp-FliF-comp_x SES surface, Hp-FliF-comp_y SES surface,
    33407 Hp-FliF-comp_z SES surface, 8 MS-ring.mrc gaussian , 172 residues, 32 4x-FlgY-
    33408 PflA.mrc gaussian 
    33409 
    33410 > hide sel surfaces
    33411 
    33412 [Repeated 1 time(s)]
    33413 
    33414 > select clear
    33415 
    33416 Drag select of Hp-FliF-comp_0 SES surface, 154076 of 308174 triangles, Hp-
    33417 FliF-comp_1 SES surface, Hp-FliF-comp_2 SES surface, Hp-FliF-comp_3 SES
    33418 surface, Hp-FliF-comp_4 SES surface, Hp-FliF-comp_5 SES surface, Hp-FliF-
    33419 comp_6 SES surface, 308144 of 308152 triangles, Hp-FliF-comp_7 SES surface,
    33420 295307 of 307576 triangles, Hp-FliF-comp_8 SES surface, 272973 of 307462
    33421 triangles, Hp-FliF-comp_9 SES surface, 235380 of 307956 triangles, Hp-FliF-
    33422 comp_AA SES surface, 53451 of 307878 triangles, Hp-FliF-comp_AP SES surface,
    33423 482 of 308526 triangles, Hp-FliF-comp_AQ SES surface, 8117 of 307878
    33424 triangles, Hp-FliF-comp_AR SES surface, 22368 of 308154 triangles, Hp-FliF-
    33425 comp_AS SES surface, 41356 of 307454 triangles, Hp-FliF-comp_B SES surface,
    33426 17461 of 102586 triangles, Hp-FliF-comp_C SES surface, Hp-FliF-comp_D SES
    33427 surface, Hp-FliF-comp_E SES surface, Hp-FliF-comp_F SES surface, Hp-FliF-
    33428 comp_G SES surface, Hp-FliF-comp_H SES surface, Hp-FliF-comp_I SES surface,
    33429 Hp-FliF-comp_J SES surface, 102531 of 102648 triangles, Hp-FliF-comp_K SES
    33430 surface, 39861 of 102380 triangles, Hp-FliF-comp_V SES surface, 34776 of
    33431 126200 triangles, Hp-FliF-comp_W SES surface, 126738 of 126760 triangles, Hp-
    33432 FliF-comp_X SES surface, Hp-FliF-comp_Y SES surface, Hp-FliF-comp_Z SES
    33433 surface, Hp-FliF-comp_a SES surface, Hp-FliF-comp_b SES surface, Hp-FliF-
    33434 comp_c SES surface, Hp-FliF-comp_d SES surface, 117758 of 126402 triangles,
    33435 Hp-FliF-comp_e SES surface, 55739 of 126996 triangles, Hp-FliF-comp_f SES
    33436 surface, 1108 of 126310 triangles, Hp-FliF-comp_q SES surface, 60184 of 307794
    33437 triangles, Hp-FliF-comp_r SES surface, 120961 of 308144 triangles, Hp-FliF-
    33438 comp_s SES surface, 209518 of 307492 triangles, Hp-FliF-comp_t SES surface,
    33439 306665 of 308006 triangles, Hp-FliF-comp_u SES surface, Hp-FliF-comp_v SES
    33440 surface, Hp-FliF-comp_w SES surface, Hp-FliF-comp_x SES surface, Hp-FliF-
    33441 comp_y SES surface, Hp-FliF-comp_z SES surface, 8 MS-ring.mrc gaussian , 103
    33442 residues, 32 4x-FlgY-PflA.mrc gaussian 
    33443 
    33444 > select clear
    33445 
    33446 > view orient
    33447 
    33448 > turn x 90
    33449 
    33450 [Repeated 2 time(s)]
    33451 
    33452 > undo
    33453 
    33454 [Repeated 1 time(s)]
    33455 
    33456 > turn x 90
    33457 
    33458 [Repeated 1 time(s)]Drag select of Hp-FliF-comp_0 SES surface, 149331 of
    33459 308174 triangles, Hp-FliF-comp_1 SES surface, Hp-FliF-comp_2 SES surface, Hp-
    33460 FliF-comp_3 SES surface, Hp-FliF-comp_4 SES surface, Hp-FliF-comp_5 SES
    33461 surface, 302887 of 307026 triangles, Hp-FliF-comp_6 SES surface, 292299 of
    33462 308152 triangles, Hp-FliF-comp_7 SES surface, 274500 of 307576 triangles, Hp-
    33463 FliF-comp_8 SES surface, 254402 of 307462 triangles, Hp-FliF-comp_9 SES
    33464 surface, 213499 of 307956 triangles, Hp-FliF-comp_AA SES surface, 71335 of
    33465 307878 triangles, Hp-FliF-comp_AS SES surface, 2423 of 307454 triangles, Hp-
    33466 FliF-comp_C SES surface, 83086 of 102940 triangles, Hp-FliF-comp_D SES
    33467 surface, Hp-FliF-comp_E SES surface, Hp-FliF-comp_F SES surface, Hp-FliF-
    33468 comp_G SES surface, Hp-FliF-comp_H SES surface, Hp-FliF-comp_I SES surface,
    33469 Hp-FliF-comp_J SES surface, Hp-FliF-comp_K SES surface, 52860 of 102380
    33470 triangles, Hp-FliF-comp_W SES surface, 77317 of 126760 triangles, Hp-FliF-
    33471 comp_X SES surface, Hp-FliF-comp_Y SES surface, Hp-FliF-comp_Z SES surface,
    33472 Hp-FliF-comp_a SES surface, Hp-FliF-comp_b SES surface, Hp-FliF-comp_c SES
    33473 surface, 126547 of 126700 triangles, Hp-FliF-comp_d SES surface, 110830 of
    33474 126402 triangles, Hp-FliF-comp_e SES surface, 52984 of 126996 triangles, Hp-
    33475 FliF-comp_f SES surface, 494 of 126310 triangles, Hp-FliF-comp_q SES surface,
    33476 16449 of 307794 triangles, Hp-FliF-comp_r SES surface, 43873 of 308144
    33477 triangles, Hp-FliF-comp_s SES surface, 106026 of 307492 triangles, Hp-FliF-
    33478 comp_t SES surface, 221057 of 308006 triangles, Hp-FliF-comp_u SES surface,
    33479 Hp-FliF-comp_v SES surface, Hp-FliF-comp_w SES surface, Hp-FliF-comp_x SES
    33480 surface, Hp-FliF-comp_y SES surface, Hp-FliF-comp_z SES surface, 8 MS-ring.mrc
    33481 gaussian , 41 residues, 24 IM.mrc gaussian 
    33482 Drag select of Hp-FliF-comp_1 SES surface, 55583 of 307826 triangles, Hp-FliF-
    33483 comp_2 SES surface, 66829 of 307256 triangles, Hp-FliF-comp_3 SES surface,
    33484 69397 of 307570 triangles, Hp-FliF-comp_4 SES surface, 66274 of 308450
    33485 triangles, Hp-FliF-comp_5 SES surface, 54668 of 307026 triangles, Hp-FliF-
    33486 comp_6 SES surface, 34167 of 308152 triangles, Hp-FliF-comp_7 SES surface,
    33487 10791 of 307576 triangles, Hp-FliF-comp_y SES surface, 732 of 306240
    33488 triangles, Hp-FliF-comp_z SES surface, 28688 of 307204 triangles 
    33489 
    33490 > select clear
    33491 
    33492 Drag select of Hp-FliF-comp_0 SES surface, 83311 of 308174 triangles, Hp-FliF-
    33493 comp_1 SES surface, 306551 of 307826 triangles, Hp-FliF-comp_2 SES surface,
    33494 300559 of 307256 triangles, Hp-FliF-comp_3 SES surface, 291476 of 307570
    33495 triangles, Hp-FliF-comp_4 SES surface, 281658 of 308450 triangles, Hp-FliF-
    33496 comp_5 SES surface, 265641 of 307026 triangles, Hp-FliF-comp_6 SES surface,
    33497 253115 of 308152 triangles, Hp-FliF-comp_7 SES surface, 219184 of 307576
    33498 triangles, Hp-FliF-comp_8 SES surface, 182124 of 307462 triangles, Hp-FliF-
    33499 comp_9 SES surface, 139238 of 307956 triangles, Hp-FliF-comp_AA SES surface,
    33500 64 of 307878 triangles, Hp-FliF-comp_D SES surface, 79118 of 102534 triangles,
    33501 Hp-FliF-comp_E SES surface, Hp-FliF-comp_F SES surface, Hp-FliF-comp_G SES
    33502 surface, Hp-FliF-comp_H SES surface, Hp-FliF-comp_I SES surface, 99609 of
    33503 102666 triangles, Hp-FliF-comp_J SES surface, 63093 of 102648 triangles, Hp-
    33504 FliF-comp_X SES surface, 35929 of 127586 triangles, Hp-FliF-comp_Y SES
    33505 surface, 115109 of 125848 triangles, Hp-FliF-comp_Z SES surface, 125524 of
    33506 126584 triangles, Hp-FliF-comp_a SES surface, 124149 of 126398 triangles, Hp-
    33507 FliF-comp_b SES surface, 113214 of 126186 triangles, Hp-FliF-comp_c SES
    33508 surface, 84162 of 126700 triangles, Hp-FliF-comp_d SES surface, 46299 of
    33509 126402 triangles, Hp-FliF-comp_e SES surface, 2181 of 126996 triangles, Hp-
    33510 FliF-comp_s SES surface, 1749 of 307492 triangles, Hp-FliF-comp_t SES surface,
    33511 21680 of 308006 triangles, Hp-FliF-comp_u SES surface, 143651 of 308588
    33512 triangles, Hp-FliF-comp_v SES surface, 300723 of 308590 triangles, Hp-FliF-
    33513 comp_w SES surface, Hp-FliF-comp_x SES surface, Hp-FliF-comp_y SES surface,
    33514 Hp-FliF-comp_z SES surface, 307180 of 307204 triangles 
    33515 
    33516 > select add #19
    33517 
    33518 112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 36 models selected 
    33519 
    33520 > volume #!5-6,8,24,32 showOutlineBox true
    33521 
    33522 > view orient
    33523 
    33524 > ui mousemode right "crop volume"
    33525 
    33526 > volume #!5-6,8,24,32 showOutlineBox false
    33527 
    33528 > select clear
    33529 
    33530 > hide #!24 models
    33531 
    33532 > hide #!25 models
    33533 
    33534 > hide #!26 models
    33535 
    33536 > hide #!27 models
    33537 
    33538 > hide #!28 models
    33539 
    33540 > hide #!29 models
    33541 
    33542 > hide #!30 models
    33543 
    33544 > hide #!31 models
    33545 
    33546 > hide #!32 models
    33547 
    33548 > hide #!16 models
    33549 
    33550 > hide #!5 models
    33551 
    33552 > hide #!6 models
    33553 
    33554 > view orient
    33555 
    33556 Drag select of Hp-FliF-comp_0 SES surface, 143157 of 308174 triangles, Hp-
    33557 FliF-comp_1 SES surface, Hp-FliF-comp_2 SES surface, Hp-FliF-comp_3 SES
    33558 surface, Hp-FliF-comp_4 SES surface, Hp-FliF-comp_5 SES surface, 306617 of
    33559 307026 triangles, Hp-FliF-comp_6 SES surface, 297776 of 308152 triangles, Hp-
    33560 FliF-comp_7 SES surface, 279954 of 307576 triangles, Hp-FliF-comp_8 SES
    33561 surface, 256577 of 307462 triangles, Hp-FliF-comp_9 SES surface, 214640 of
    33562 307956 triangles, Hp-FliF-comp_AA SES surface, 53365 of 307878 triangles, Hp-
    33563 FliF-comp_AQ SES surface, 74 of 307878 triangles, Hp-FliF-comp_AR SES surface,
    33564 7294 of 308154 triangles, Hp-FliF-comp_AS SES surface, 25284 of 307454
    33565 triangles, Hp-FliF-comp_B SES surface, 20152 of 102586 triangles, Hp-FliF-
    33566 comp_C SES surface, Hp-FliF-comp_D SES surface, Hp-FliF-comp_E SES surface,
    33567 Hp-FliF-comp_F SES surface, Hp-FliF-comp_G SES surface, Hp-FliF-comp_H SES
    33568 surface, Hp-FliF-comp_I SES surface, Hp-FliF-comp_J SES surface, Hp-FliF-
    33569 comp_K SES surface, 48901 of 102380 triangles, Hp-FliF-comp_V SES surface,
    33570 29501 of 126200 triangles, Hp-FliF-comp_W SES surface, 125127 of 126760
    33571 triangles, Hp-FliF-comp_X SES surface, Hp-FliF-comp_Y SES surface, Hp-FliF-
    33572 comp_Z SES surface, Hp-FliF-comp_a SES surface, Hp-FliF-comp_b SES surface,
    33573 Hp-FliF-comp_c SES surface, Hp-FliF-comp_d SES surface, 115537 of 126402
    33574 triangles, Hp-FliF-comp_e SES surface, 53093 of 126996 triangles, Hp-FliF-
    33575 comp_q SES surface, 49856 of 307794 triangles, Hp-FliF-comp_r SES surface,
    33576 100944 of 308144 triangles, Hp-FliF-comp_s SES surface, 199515 of 307492
    33577 triangles, Hp-FliF-comp_t SES surface, Hp-FliF-comp_u SES surface, Hp-FliF-
    33578 comp_v SES surface, Hp-FliF-comp_w SES surface, Hp-FliF-comp_x SES surface,
    33579 Hp-FliF-comp_y SES surface, Hp-FliF-comp_z SES surface, 23 residues 
    33580 
    33581 > select add #19
    33582 
    33583 112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 5 models selected 
    33584 
    33585 > select subtract #19
    33586 
    33587 81 models selected 
    33588 
    33589 > select add #19
    33590 
    33591 112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 2 models selected 
    33592 
    33593 > select subtract #19
    33594 
    33595 81 models selected 
    33596 Drag select of Hp-FliF-comp_0 SES surface, 148981 of 308174 triangles, Hp-
    33597 FliF-comp_1 SES surface, Hp-FliF-comp_2 SES surface, Hp-FliF-comp_3 SES
    33598 surface, Hp-FliF-comp_4 SES surface, Hp-FliF-comp_5 SES surface, Hp-FliF-
    33599 comp_6 SES surface, 300852 of 308152 triangles, Hp-FliF-comp_7 SES surface,
    33600 284597 of 307576 triangles, Hp-FliF-comp_8 SES surface, 261021 of 307462
    33601 triangles, Hp-FliF-comp_9 SES surface, 226705 of 307956 triangles, Hp-FliF-
    33602 comp_AA SES surface, 63490 of 307878 triangles, Hp-FliF-comp_AQ SES surface,
    33603 600 of 307878 triangles, Hp-FliF-comp_AR SES surface, 10882 of 308154
    33604 triangles, Hp-FliF-comp_AS SES surface, 30600 of 307454 triangles, Hp-FliF-
    33605 comp_B SES surface, 25923 of 102586 triangles, Hp-FliF-comp_C SES surface, Hp-
    33606 FliF-comp_D SES surface, Hp-FliF-comp_E SES surface, Hp-FliF-comp_F SES
    33607 surface, Hp-FliF-comp_G SES surface, Hp-FliF-comp_H SES surface, Hp-FliF-
    33608 comp_I SES surface, Hp-FliF-comp_J SES surface, Hp-FliF-comp_K SES surface,
    33609 54434 of 102380 triangles, Hp-FliF-comp_V SES surface, 38106 of 126200
    33610 triangles, Hp-FliF-comp_W SES surface, 126732 of 126760 triangles, Hp-FliF-
    33611 comp_X SES surface, Hp-FliF-comp_Y SES surface, Hp-FliF-comp_Z SES surface,
    33612 Hp-FliF-comp_a SES surface, Hp-FliF-comp_b SES surface, Hp-FliF-comp_c SES
    33613 surface, Hp-FliF-comp_d SES surface, 118350 of 126402 triangles, Hp-FliF-
    33614 comp_e SES surface, 57474 of 126996 triangles, Hp-FliF-comp_f SES surface,
    33615 1323 of 126310 triangles, Hp-FliF-comp_q SES surface, 54683 of 307794
    33616 triangles, Hp-FliF-comp_r SES surface, 112699 of 308144 triangles, Hp-FliF-
    33617 comp_s SES surface, 208916 of 307492 triangles, Hp-FliF-comp_t SES surface,
    33618 308000 of 308006 triangles, Hp-FliF-comp_u SES surface, Hp-FliF-comp_v SES
    33619 surface, Hp-FliF-comp_w SES surface, Hp-FliF-comp_x SES surface, Hp-FliF-
    33620 comp_y SES surface, Hp-FliF-comp_z SES surface, 67 residues 
    33621 
    33622 > hide sel surfaces
    33623 
    33624 [Repeated 1 time(s)]
    33625 
    33626 > select clear
    33627 
    33628 > select add #19
    33629 
    33630 112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 2 models selected 
    33631 
    33632 > hide sel surfaces
    33633 
    33634 > hide sel cartoons
    33635 
    33636 > show sel cartoons
    33637 
    33638 > select clear
    33639 
    33640 Drag select of 8 MS-ring.mrc gaussian , 7753 residues, 20 pseudobonds 
    33641 
    33642 > hide #19.33 models
    33643 
    33644 > hide #19.34 models
    33645 
    33646 > hide #19.35 models
    33647 
    33648 > hide #19.36 models
    33649 
    33650 > hide #19.37 models
    33651 
    33652 > hide #19.38 models
    33653 
    33654 > hide #19.39 models
    33655 
    33656 > hide #19.40 models
    33657 
    33658 > hide #19.53 models
    33659 
    33660 > hide #19.54 models
    33661 
    33662 > hide #19.55 models
    33663 
    33664 > hide #19.56 models
    33665 
    33666 > hide #19.57 models
    33667 
    33668 > hide #19.58 models
    33669 
    33670 > hide #19.59 models
    33671 
    33672 > hide #19.76 models
    33673 
    33674 > hide #19.77 models
    33675 
    33676 > hide #19.78 models
    33677 
    33678 > hide #19.79 models
    33679 
    33680 > hide #19.80 models
    33681 
    33682 > hide #19.81 models
    33683 
    33684 > hide #19.82 models
    33685 
    33686 > hide sel cartoons
    33687 
    33688 [Repeated 1 time(s)]
    33689 
    33690 > show sel cartoons
    33691 
    33692 > show sel surfaces
    33693 
    33694 > select add #19
    33695 
    33696 112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 58 models selected 
    33697 
    33698 > select subtract #19.1
    33699 
    33700 112125 atoms, 113781 bonds, 14157 residues, 84 models selected 
    33701 
    33702 > select add #19
    33703 
    33704 112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 85 models selected 
    33705 
    33706 > hide sel cartoons
    33707 
    33708 > select clear
    33709 
    33710 > show #!25 models
    33711 
    33712 > show #!26 models
    33713 
    33714 > show #!27 models
    33715 
    33716 > show #!28 models
    33717 
    33718 > show #!29 models
    33719 
    33720 > show #!30 models
    33721 
    33722 > show #!31 models
    33723 
    33724 Cell requested for row 125 is out of bounds for table with 131 rows! Resizing
    33725 table model. 
    33726 
    33727 > select add #25
    33728 
    33729 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    33730 
    33731 > select add #26
    33732 
    33733 6000 atoms, 6102 bonds, 728 residues, 3 models selected 
    33734 
    33735 > select add #27
    33736 
    33737 9000 atoms, 9153 bonds, 1092 residues, 5 models selected 
    33738 
    33739 > select add #28
    33740 
    33741 12000 atoms, 12204 bonds, 1456 residues, 7 models selected 
    33742 
    33743 > select add #29
    33744 
    33745 15000 atoms, 15255 bonds, 1820 residues, 9 models selected 
    33746 
    33747 > select add #30
    33748 
    33749 18000 atoms, 18306 bonds, 2184 residues, 11 models selected 
    33750 
    33751 > select add #31
    33752 
    33753 21000 atoms, 21357 bonds, 2548 residues, 13 models selected 
    33754 Alignment identifier is 1 
    33755 Alignment identifier is 2 
    33756 
    33757 > hide sel surfaces
    33758 
    33759 > show sel surfaces
    33760 
    33761 > hide sel cartoons
    33762 
    33763 The cached device pixel ratio value was stale on window expose. Please file a
    33764 QTBUG which explains how to reproduce. 
    33765 
    33766 > select clear
    33767 
    33768 > select #25/A:1 #26/A:1 #27/A:1 #28/A:1 #29/A:1 #30/A:1 #31/A:1
    33769 
    33770 56 atoms, 49 bonds, 7 residues, 7 models selected 
    33771 
    33772 > select #25/A:1-5 #26/A:1-5 #27/A:1-5 #28/A:1-5 #29/A:1-5 #30/A:1-5 #31/A:1-5
    33773 
    33774 308 atoms, 315 bonds, 35 residues, 7 models selected 
    33775 . [ID: 1] region 7 chains [1-5] RMSD: 190.059 
    33776  
    33777 
    33778 > select #25/B:1 #26/B:1 #27/B:1 #28/B:1 #29/B:1 #30/B:1 #31/B:1
    33779 
    33780 56 atoms, 49 bonds, 7 residues, 7 models selected 
    33781 
    33782 > select #25/B:1-27 #26/B:1-27 #27/B:1-27 #28/B:1-27 #29/B:1-27 #30/B:1-27
    33783 > #31/B:1-27
    33784 
    33785 1498 atoms, 1498 bonds, 189 residues, 7 models selected 
    33786 . [ID: 2] region 7 chains [1-27] RMSD: 201.751 
    33787  
    33788 
    33789 > hide sel surfaces
    33790 
    33791 > select clear
    33792 
    33793 > show #18 models
    33794 
    33795 > show #20 models
    33796 
    33797 > show #22 models
    33798 
    33799 Alignment identifier is 1 
    33800 Alignment identifier is 2 
    33801 Alignment identifier is 3 
    33802 Alignment identifier is 4 
    33803 Alignment identifier is 5 
    33804 Alignment identifier is 6 
    33805 Alignment identifier is 7 
    33806 Alignment identifier is 8 
    33807 Alignment identifier is 9 
    33808 Alignment identifier is 10 
    33809 Alignment identifier is 11 
    33810 
    33811 > select #20/A,L-T:52 #18/A,L-T:52 #22/A,L-T:52
    33812 
    33813 180 atoms, 150 bonds, 30 residues, 3 models selected 
    33814 
    33815 > select #20/A,L-T #18/A,L-T #22/A,L-T
    33816 
    33817 5580 atoms, 5640 bonds, 720 residues, 3 models selected 
    33818 9 [ID: 9] region 30 chains [1-24] RMSD: 107.276 
    33819  
    33820 
    33821 > select add #18
    33822 
    33823 13570 atoms, 13710 bonds, 1700 residues, 3 models selected 
    33824 
    33825 > select add #20
    33826 
    33827 21560 atoms, 21780 bonds, 2680 residues, 3 models selected 
    33828 
    33829 > select add #22
    33830 
    33831 29550 atoms, 29850 bonds, 3660 residues, 3 models selected 
    33832 
    33833 > hide sel cartoons
    33834 
    33835 > show sel surfaces
    33836 
    33837 > select #20/A,L-T:52 #18/A,L-T:52 #22/A,L-T:52
    33838 
    33839 180 atoms, 150 bonds, 30 residues, 3 models selected 
    33840 
    33841 > select #20/A,L-T #18/A,L-T #22/A,L-T
    33842 
    33843 5580 atoms, 5640 bonds, 720 residues, 3 models selected 
    33844 9 [ID: 9] region 30 chains [1-24] RMSD: 107.276 
    33845  
    33846 
    33847 > hide sel surfaces
    33848 
    33849 > color #18 #b7a359ff models
    33850 
    33851 > color #20 #b7a359ff models
    33852 
    33853 > color #22 #b7a359ff models
    33854 
    33855 > select clear
    33856 
    33857 > show #!14 models
    33858 
    33859 > hide #!14 models
    33860 
    33861 > show #!16 models
    33862 
    33863 > hide #!16 models
    33864 
    33865 > show #!16 models
    33866 
    33867 > select add #16.1
    33868 
    33869 5455 atoms, 5553 bonds, 678 residues, 1 model selected 
    33870 
    33871 > select add #16.3
    33872 
    33873 6334 atoms, 6447 bonds, 787 residues, 2 models selected 
    33874 
    33875 > select add #16.7
    33876 
    33877 11789 atoms, 12000 bonds, 1465 residues, 3 models selected 
    33878 
    33879 > select add #16.9
    33880 
    33881 17244 atoms, 17553 bonds, 2143 residues, 4 models selected 
    33882 
    33883 > select add #16.10
    33884 
    33885 18123 atoms, 18447 bonds, 2252 residues, 5 models selected 
    33886 
    33887 > select add #16.11
    33888 
    33889 23578 atoms, 24000 bonds, 2930 residues, 6 models selected 
    33890 
    33891 > select add #16.12
    33892 
    33893 24457 atoms, 24894 bonds, 3039 residues, 7 models selected 
    33894 
    33895 > select add #16.13
    33896 
    33897 29912 atoms, 30447 bonds, 3717 residues, 8 models selected 
    33898 
    33899 > select add #16.14
    33900 
    33901 30791 atoms, 31341 bonds, 3826 residues, 9 models selected 
    33902 
    33903 > select add #16.15
    33904 
    33905 35862 atoms, 36497 bonds, 4447 residues, 10 models selected 
    33906 
    33907 > select add #16.18
    33908 
    33909 40933 atoms, 41653 bonds, 5068 residues, 11 models selected 
    33910 
    33911 > select subtract #16.18
    33912 
    33913 35862 atoms, 36497 bonds, 4447 residues, 10 models selected 
    33914 
    33915 > select add #16.19
    33916 
    33917 40933 atoms, 41653 bonds, 5068 residues, 11 models selected 
    33918 
    33919 > select add #16.20
    33920 
    33921 46004 atoms, 46809 bonds, 5689 residues, 12 models selected 
    33922 
    33923 > select add #16.21
    33924 
    33925 51075 atoms, 51965 bonds, 6310 residues, 13 models selected 
    33926 
    33927 > select add #16.22
    33928 
    33929 52310 atoms, 53206 bonds, 6465 residues, 14 models selected 
    33930 
    33931 > select add #16.23
    33932 
    33933 53545 atoms, 54447 bonds, 6620 residues, 15 models selected 
    33934 
    33935 > select add #16.30
    33936 
    33937 54780 atoms, 55688 bonds, 6775 residues, 16 models selected 
    33938 
    33939 > select add #16.31
    33940 
    33941 56015 atoms, 56929 bonds, 6930 residues, 17 models selected 
    33942 
    33943 > select add #16.32
    33944 
    33945 57250 atoms, 58170 bonds, 7085 residues, 18 models selected 
    33946 
    33947 > select add #16.33
    33948 
    33949 58485 atoms, 59411 bonds, 7240 residues, 19 models selected 
    33950 
    33951 > select add #16.34
    33952 
    33953 59720 atoms, 60652 bonds, 7395 residues, 20 models selected 
    33954 
    33955 > select add #16.35
    33956 
    33957 60955 atoms, 61893 bonds, 7550 residues, 21 models selected 
    33958 
    33959 > hide sel cartoons
    33960 
    33961 > show sel surfaces
    33962 
    33963 > select clear
    33964 
    33965 Cell requested for row 20 is out of bounds for table with 83 rows! Resizing
    33966 table model. 
    33967 
    33968 > show #!10 models
    33969 
    33970 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    33971 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-
    33972 > files/BbMotB_dimer_extended.pdb
    33973 
    33974 Chain information for BbMotB_dimer_extended.pdb #33 
    33975 --- 
    33976 Chain | Description 
    33977 K | No description available 
    33978 L | No description available 
    33979  
    33980 
    33981 > select add #33
    33982 
    33983 4099 atoms, 4171 bonds, 2 pseudobonds, 518 residues, 2 models selected 
    33984 
    33985 > ui mousemode right "translate selected models"
    33986 
    33987 > view matrix models #33,1,0,0,21.679,0,1,0,19.023,0,0,1,69.811
    33988 
    33989 > view matrix models #33,1,0,0,216.28,0,1,0,67.682,0,0,1,108.49
    33990 
    33991 > view matrix models #33,1,0,0,180.91,0,1,0,66.862,0,0,1,108.02
    33992 
    33993 > view matrix models #33,1,0,0,173.74,0,1,0,68.504,0,0,1,102.5
    33994 
    33995 > ui mousemode right "rotate selected models"
    33996 
    33997 > view matrix models
    33998 > #33,0.82212,0.19102,-0.53631,216.23,-0.030867,0.9556,0.29305,52.42,0.56847,-0.22437,0.79152,83.495
    33999 
    34000 > view matrix models
    34001 > #33,0.74317,0.51518,-0.42695,185.49,-0.30248,0.82785,0.47241,76.836,0.59682,-0.22194,0.77107,82.089
    34002 
    34003 > ui mousemode right "translate selected models"
    34004 
    34005 > view matrix models
    34006 > #33,0.74317,0.51518,-0.42695,222.76,-0.30248,0.82785,0.47241,52.168,0.59682,-0.22194,0.77107,83.322
    34007 
    34008 > ui mousemode right "rotate selected models"
    34009 
    34010 > view matrix models
    34011 > #33,0.82295,0.51043,-0.24942,201.24,-0.34242,0.79599,0.49915,56.935,0.45332,-0.32537,0.82984,102.39
    34012 
    34013 > ui mousemode right "translate selected models"
    34014 
    34015 > view matrix models
    34016 > #33,0.82295,0.51043,-0.24942,188.94,-0.34242,0.79599,0.49915,52.835,0.45332,-0.32537,0.82984,98.389
    34017 
    34018 > ui mousemode right "rotate selected models"
    34019 
    34020 > view matrix models
    34021 > #33,0.79756,0.50803,-0.32527,197.69,-0.31282,0.80936,0.49707,48.84,0.51579,-0.29469,0.80444,91.397
    34022 
    34023 > ui mousemode right "translate selected models"
    34024 
    34025 > view matrix models
    34026 > #33,0.79756,0.50803,-0.32527,201.01,-0.31282,0.80936,0.49707,50.28,0.51579,-0.29469,0.80444,92.963
    34027 
    34028 > view matrix models
    34029 > #33,0.79756,0.50803,-0.32527,203.08,-0.31282,0.80936,0.49707,52.155,0.51579,-0.29469,0.80444,89.909
    34030 
    34031 > ui mousemode right "rotate selected models"
    34032 
    34033 > view matrix models
    34034 > #33,0.74765,0.61942,-0.23944,190.95,-0.41678,0.71836,0.557,66.071,0.51703,-0.31665,0.79525,92.539
    34035 
    34036 > ui mousemode right "translate selected models"
    34037 
    34038 > view matrix models
    34039 > #33,0.74765,0.61942,-0.23944,194.55,-0.41678,0.71836,0.557,61.303,0.51703,-0.31665,0.79525,91.721
    34040 
    34041 > select clear
    34042 
    34043 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    34044 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-
    34045 > files/BbMotB_dimer_extended.pdb
    34046 
    34047 Chain information for BbMotB_dimer_extended.pdb #34 
    34048 --- 
    34049 Chain | Description 
    34050 K | No description available 
    34051 L | No description available 
    34052  
    34053 
    34054 > select add #34
    34055 
    34056 4099 atoms, 4171 bonds, 2 pseudobonds, 518 residues, 2 models selected 
    34057 
    34058 > view matrix models #34,1,0,0,161.65,0,1,0,136.58,0,0,1,-67.038
    34059 
    34060 > view matrix models #34,1,0,0,237.53,0,1,0,161.8,0,0,1,76.649
    34061 
    34062 > view matrix models #34,1,0,0,199.38,0,1,0,175.58,0,0,1,82.821
    34063 
    34064 > close #34
    34065 
    34066 > combine #33 modelId #34 name BbMotB_dimer_extended.pdb
    34067 
    34068 > select add #34
    34069 
    34070 4099 atoms, 4171 bonds, 2 pseudobonds, 518 residues, 2 models selected 
    34071 
    34072 > view matrix models
    34073 > #34,0.74765,0.61942,-0.23944,215.85,-0.41678,0.71836,0.557,171.61,0.51703,-0.31665,0.79525,89.654
    34074 
    34075 > view matrix models
    34076 > #34,0.74765,0.61942,-0.23944,215.72,-0.41678,0.71836,0.557,169.76,0.51703,-0.31665,0.79525,89.668
    34077 
    34078 > combine #34 modelId #35 name BbMotB_dimer_extended.pdb
    34079 
    34080 > select subtract #34
    34081 
    34082 Nothing selected 
    34083 
    34084 > select add #35
    34085 
    34086 4099 atoms, 4171 bonds, 2 pseudobonds, 518 residues, 2 models selected 
    34087 
    34088 > view matrix models
    34089 > #35,0.74765,0.61942,-0.23944,198.58,-0.41678,0.71836,0.557,281.85,0.51703,-0.31665,0.79525,88.152
    34090 
    34091 > ui mousemode right "rotate selected models"
    34092 
    34093 > view matrix models
    34094 > #35,0.8127,0.47483,-0.33771,213.27,-0.26798,0.81924,0.50698,261.8,0.5174,-0.32152,0.79305,88.739
    34095 
    34096 > ui mousemode right "translate selected models"
    34097 
    34098 > view matrix models
    34099 > #35,0.8127,0.47483,-0.33771,215.47,-0.26798,0.81924,0.50698,267.82,0.5174,-0.32152,0.79305,88.742
    34100 
    34101 > select clear
    34102 
    34103 > select add #33
    34104 
    34105 4099 atoms, 4171 bonds, 2 pseudobonds, 518 residues, 2 models selected 
    34106 
    34107 > select add #34
    34108 
    34109 8198 atoms, 8342 bonds, 4 pseudobonds, 1036 residues, 4 models selected 
    34110 
    34111 > select add #35
    34112 
    34113 12297 atoms, 12513 bonds, 6 pseudobonds, 1554 residues, 6 models selected 
    34114 
    34115 > color #33-35 #905d12ff models
    34116 
    34117 The cached device pixel ratio value was stale on window expose. Please file a
    34118 QTBUG which explains how to reproduce. 
    34119 
    34120 Alignment identifier is 1 
    34121 Alignment identifier is 2 
    34122 
    34123 > select #33/K:260 #34/K:260 #35/K:260
    34124 
    34125 27 atoms, 24 bonds, 3 residues, 3 models selected 
    34126 
    34127 > select #33/K:159-260 #34/K:159-260 #35/K:159-260
    34128 
    34129 2433 atoms, 2481 bonds, 3 pseudobonds, 303 residues, 6 models selected 
    34130 1 [ID: 1] region 3 chains [158-258] RMSD: 158.691 
    34131  
    34132 
    34133 > select #33/K:1 #34/K:1 #35/K:1
    34134 
    34135 24 atoms, 21 bonds, 3 residues, 3 models selected 
    34136 
    34137 > select #33/K:1-84 #34/K:1-84 #35/K:1-84
    34138 
    34139 1977 atoms, 2019 bonds, 252 residues, 3 models selected 
    34140 1 [ID: 1] region 3 chains [1-84] RMSD: 159.798 
    34141  
    34142 
    34143 > select #33/K:1-2 #34/K:1-2 #35/K:1-2
    34144 
    34145 39 atoms, 36 bonds, 6 residues, 3 models selected 
    34146 
    34147 > select #33/K:1-42 #34/K:1-42 #35/K:1-42
    34148 
    34149 999 atoms, 1017 bonds, 126 residues, 3 models selected 
    34150 1 [ID: 1] region 3 chains [1-42] RMSD: 161.188 
    34151  
    34152 
    34153 > select #33/L:1-2 #34/L:1-2 #35/L:1-2
    34154 
    34155 39 atoms, 36 bonds, 6 residues, 3 models selected 
    34156 
    34157 > select #33/L:1-6 #34/L:1-6 #35/L:1-6
    34158 
    34159 147 atoms, 144 bonds, 18 residues, 3 models selected 
    34160 2 [ID: 2] region 3 chains [1-6] RMSD: 162.586 
    34161  
    34162 
    34163 > select #33/K:1 #34/K:1 #35/K:1
    34164 
    34165 24 atoms, 21 bonds, 3 residues, 3 models selected 
    34166 
    34167 > select #33/K:1-42 #34/K:1-42 #35/K:1-42
    34168 
    34169 999 atoms, 1017 bonds, 126 residues, 3 models selected 
    34170 1 [ID: 1] region 3 chains [1-42] RMSD: 161.188 
    34171  
    34172 
    34173 > select #33/K:1-2 #34/K:1-2 #35/K:1-2
    34174 
    34175 39 atoms, 36 bonds, 6 residues, 3 models selected 
    34176 
    34177 > select #33/K:1-16 #34/K:1-16 #35/K:1-16
    34178 
    34179 360 atoms, 363 bonds, 48 residues, 3 models selected 
    34180 1 [ID: 1] region 3 chains [1-16] RMSD: 161.945 
    34181  
    34182 
    34183 > select #33/K:1-2 #34/K:1-2 #35/K:1-2
    34184 
    34185 39 atoms, 36 bonds, 6 residues, 3 models selected 
    34186 
    34187 > select #33/K:1-36 #34/K:1-36 #35/K:1-36
    34188 
    34189 852 atoms, 867 bonds, 108 residues, 3 models selected 
    34190 1 [ID: 1] region 3 chains [1-36] RMSD: 161.445 
    34191  
    34192 
    34193 > select #33/K:42 #34/K:42 #35/K:42
    34194 
    34195 24 atoms, 21 bonds, 3 residues, 3 models selected 
    34196 
    34197 > select #33/K:1-42 #34/K:1-42 #35/K:1-42
    34198 
    34199 999 atoms, 1017 bonds, 126 residues, 3 models selected 
    34200 1 [ID: 1] region 3 chains [1-42] RMSD: 161.188 
    34201  
    34202 
    34203 > select add #33
    34204 
    34205 4765 atoms, 4849 bonds, 2 pseudobonds, 602 residues, 4 models selected 
    34206 
    34207 > select add #34
    34208 
    34209 8531 atoms, 8681 bonds, 4 pseudobonds, 1078 residues, 5 models selected 
    34210 
    34211 > select add #35
    34212 
    34213 12297 atoms, 12513 bonds, 6 pseudobonds, 1554 residues, 6 models selected 
    34214 
    34215 > hide sel cartoons
    34216 
    34217 > show sel surfaces
    34218 
    34219 > select #33/K:1-2 #34/K:1-2 #35/K:1-2
    34220 
    34221 39 atoms, 36 bonds, 6 residues, 3 models selected 
    34222 
    34223 > select #33/K:1-42 #34/K:1-42 #35/K:1-42
    34224 
    34225 999 atoms, 1017 bonds, 126 residues, 3 models selected 
    34226 1 [ID: 1] region 3 chains [1-42] RMSD: 161.188 
    34227  
    34228 
    34229 > hide sel surfaces
    34230 
    34231 > select #33/L:1-2 #34/L:1-2 #35/L:1-2
    34232 
    34233 39 atoms, 36 bonds, 6 residues, 3 models selected 
    34234 
    34235 > select #33/L:1-40 #34/L:1-40 #35/L:1-40
    34236 
    34237 951 atoms, 969 bonds, 120 residues, 3 models selected 
    34238 2 [ID: 2] region 3 chains [1-40] RMSD: 161.008 
    34239  
    34240 
    34241 > hide sel surfaces
    34242 
    34243 > select clear
    34244 
    34245 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    34246 > manuscript/Start_Aug_2024/Local-ref-PflAB/Develop-model-Figure.cxs
    34247 > includeMaps true
    34248 
    34249 > select add #10
    34250 
    34251 2 models selected 
    34252 
    34253 > ui tool show "Segment Map"
    34254 
    34255 Segmenting MotBpg.mrc, density threshold 0.002900 
    34256 Only showing 60 of 1058 regions. 
    34257 Showing 60 of 1058 region surfaces 
    34258 46770 watershed regions, grouped to 1058 regions 
    34259 Showing MotBpg.seg - 1058 regions, 60 surfaces 
    34260 
    34261 > select subtract #10
    34262 
    34263 Nothing selected 
    34264 
    34265 > hide #!10 models
    34266 
    34267 > hide #!8 models
    34268 
    34269 > hide #!16 models
    34270 
    34271 > show #!17 models
    34272 
    34273 > hide #!17 models
    34274 
    34275 > hide #!18 models
    34276 
    34277 > hide #!19 models
    34278 
    34279 > hide #!20 models
    34280 
    34281 > hide #!21 models
    34282 
    34283 > show #!21 models
    34284 
    34285 > hide #!22 models
    34286 
    34287 > hide #!25 models
    34288 
    34289 > hide #!26 models
    34290 
    34291 > hide #!27 models
    34292 
    34293 > hide #!28 models
    34294 
    34295 > hide #!29 models
    34296 
    34297 > hide #!30 models
    34298 
    34299 > hide #!31 models
    34300 
    34301 > hide #!33 models
    34302 
    34303 > hide #!34 models
    34304 
    34305 > hide #!35 models
    34306 
    34307 > select #21.1
    34308 
    34309 1 model selected 
    34310 
    34311 > select add #21.4
    34312 
    34313 2 models selected 
    34314 Opened MotBpg_imasked as #36, grid size 220,250,200, pixel 2.15,2.15,2.15,
    34315 shown at step 1, values float32 
    34316 
    34317 The cached device pixel ratio value was stale on window expose. Please file a
    34318 QTBUG which explains how to reproduce. 
    34319 
    34320 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    34321 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    34322 > segment_Aug2420204/3xMotBpg.mrc models #36
    34323 
    34324 > close #21
    34325 
    34326 > volume gaussian #36 sDev 3
    34327 
    34328 Opened 3xMotBpg.mrc gaussian as #21, grid size 220,250,200, pixel
    34329 2.15,2.15,2.15, shown at step 1, values float32 
    34330 
    34331 > close #21
    34332 
    34333 > volume gaussian #36 sDev 2
    34334 
    34335 Opened 3xMotBpg.mrc gaussian as #21, grid size 220,250,200, pixel
    34336 2.15,2.15,2.15, shown at step 1, values float32 
    34337 
    34338 > surface dust #21 size 12.6
    34339 
    34340 > surface dust #21 size 50
    34341 
    34342 > surface dust #21 size 60
    34343 
    34344 > ui tool show "Map Eraser"
    34345 
    34346 > volume erase #21 center 309.37,266.92,146.96 radius 190.15 outside true
    34347 
    34348 > color #21 #72727259 models
    34349 
    34350 > close #36
    34351 
    34352 > show #!33 models
    34353 
    34354 > show #!34 models
    34355 
    34356 > show #!35 models
    34357 
    34358 > 30\. combine #33-35 modelId #36 name 3x-BbMotB_dimer_extended.pdb
    34359 
    34360 Unknown command: 30. combine #33-35 modelId #36 name
    34361 3x-BbMotB_dimer_extended.pdb 
    34362 
    34363 > combine #33-35 modelId #36 name 3x-BbMotB_dimer_extended.pdb
    34364 
    34365 Remapping chain ID 'K' in BbMotB_dimer_extended.pdb #34 to 'M' 
    34366 Remapping chain ID 'L' in BbMotB_dimer_extended.pdb #34 to 'N' 
    34367 Remapping chain ID 'K' in BbMotB_dimer_extended.pdb #35 to 'O' 
    34368 Remapping chain ID 'L' in BbMotB_dimer_extended.pdb #35 to 'P' 
    34369 
    34370 > hide #!33 models
    34371 
    34372 > hide #!34 models
    34373 
    34374 > hide #!35 models
    34375 
    34376 > select add #36.1
    34377 
    34378 6 pseudobonds, 1 model selected 
    34379 
    34380 > select subtract #36.1
    34381 
    34382 Nothing selected 
    34383 
    34384 > close #36
    34385 
    34386 > show #!33 models
    34387 
    34388 > show #!34 models
    34389 
    34390 > show #!35 models
    34391 
    34392 > show #!25 models
    34393 
    34394 > show #!26 models
    34395 
    34396 > show #!27 models
    34397 
    34398 > show #!28 models
    34399 
    34400 > show #!29 models
    34401 
    34402 > show #!31 models
    34403 
    34404 > show #!30 models
    34405 
    34406 > show #!32 models
    34407 
    34408 > show #!24 models
    34409 
    34410 > show #!23 models
    34411 
    34412 > hide #!23 models
    34413 
    34414 > show #!23 models
    34415 
    34416 > hide #!23 models
    34417 
    34418 > show #!22 models
    34419 
    34420 > hide #!22 models
    34421 
    34422 > show #!22 models
    34423 
    34424 > show #!20 models
    34425 
    34426 > show #!18 models
    34427 
    34428 > show #!19 models
    34429 
    34430 > show #!17 models
    34431 
    34432 > show #!15 models
    34433 
    34434 > hide #!15 models
    34435 
    34436 > show #!16 models
    34437 
    34438 > show #!15 models
    34439 
    34440 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    34441 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-files/7cbl.pdb
    34442 
    34443 7cbl.pdb title: 
    34444 Cryo-em structure of the flagellar LP ring from salmonella [more info...] 
    34445  
    34446 Chain information for 7cbl.pdb #36 
    34447 --- 
    34448 Chain | Description | UniProt 
    34449 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z | basal BODY L-RING protein | FLGH_SALTY 1-232 
    34450 a b c d e f g h i j k l m n o p q r s t u v w x y z | basal BODY P-RING protein | FLGI_SALTY 1-365 
    34451  
    34452 Non-standard residues in 7cbl.pdb #36 
    34453 --- 
    34454 OCA — octanoic acid (caprylic acid) 
    34455  
    34456 
    34457 > select add #36
    34458 
    34459 99242 atoms, 100516 bonds, 52 pseudobonds, 13390 residues, 2 models selected 
    34460 
    34461 > ui mousemode right "rotate selected models"
    34462 
    34463 > view matrix models
    34464 > #36,0.99952,-0.023444,-0.020012,14.476,0.023458,0.99972,0.00046154,-7.9312,0.019995,-0.00093074,0.9998,-6.3355
    34465 
    34466 > view matrix models
    34467 > #36,0.99016,0.091812,0.10556,-61.574,0.12368,-0.92715,-0.35369,717.2,0.065401,0.36327,-0.92939,481.42
    34468 
    34469 > view matrix models
    34470 > #36,0.95439,0.16729,0.24728,-120.69,0.24621,-0.90949,-0.33497,664.1,0.16886,0.38057,-0.9092,434.38
    34471 
    34472 > ui mousemode right "translate selected models"
    34473 
    34474 > view matrix models
    34475 > #36,0.95439,0.16729,0.24728,-411.87,0.24621,-0.90949,-0.33497,634.98,0.16886,0.38057,-0.9092,400.89
    34476 
    34477 > view matrix models
    34478 > #36,0.95439,0.16729,0.24728,-430.05,0.24621,-0.90949,-0.33497,585.73,0.16886,0.38057,-0.9092,470.59
    34479 
    34480 The cached device pixel ratio value was stale on window expose. Please file a
    34481 QTBUG which explains how to reproduce. 
    34482 
    34483 > view matrix models
    34484 > #36,0.95439,0.16729,0.24728,-430.2,0.24621,-0.90949,-0.33497,584.34,0.16886,0.38057,-0.9092,468.67
    34485 
    34486 > ui mousemode right "rotate selected models"
    34487 
    34488 > view matrix models
    34489 > #36,0.94876,0.1594,0.27286,-433.95,0.18496,-0.98021,-0.070503,542.9,0.25622,0.11736,-0.95947,543.61
    34490 
    34491 > ui mousemode right "translate selected models"
    34492 
    34493 > view matrix models
    34494 > #36,0.94876,0.1594,0.27286,-432.12,0.18496,-0.98021,-0.070503,562.18,0.25622,0.11736,-0.95947,530
    34495 
    34496 > view matrix models
    34497 > #36,0.94876,0.1594,0.27286,-426.95,0.18496,-0.98021,-0.070503,549.55,0.25622,0.11736,-0.95947,532.65
    34498 
    34499 > ui tool show "Fit in Map"
    34500 
    34501 The cached device pixel ratio value was stale on window expose. Please file a
    34502 QTBUG which explains how to reproduce. 
    34503 
    34504 [Repeated 1 time(s)]
    34505 
    34506 > fitmap #36 inMap #15
    34507 
    34508 Fit molecule 7cbl.pdb (#36) to map LP-ring.mrc gaussian (#15) using 99242
    34509 atoms 
    34510 average map value = 0.01848, steps = 192 
    34511 shifted from previous position = 26.5 
    34512 rotated from previous position = 19.1 degrees 
    34513 atoms outside contour = 51926, contour level = 0.0029 
    34514  
    34515 Position of 7cbl.pdb (#36) relative to LP-ring.mrc gaussian (#15) coordinates: 
    34516 Matrix rotation and translation 
    34517 0.98109265 0.18738329 -0.04842298 -364.80581143 
    34518 0.18778874 -0.98220164 0.00392332 530.82087661 
    34519 -0.04682597 -0.01294243 -0.99881924 690.06118649 
    34520 Axis -0.99526186 -0.09424097 0.02392613 
    34521 Axis point 0.00000000 284.13402910 339.44972981 
    34522 Rotation angle (degrees) 179.51452584 
    34523 Shift along axis 329.56273090 
    34524  
    34525 
    34526 > fitmap #36 inMap #15
    34527 
    34528 Fit molecule 7cbl.pdb (#36) to map LP-ring.mrc gaussian (#15) using 99242
    34529 atoms 
    34530 average map value = 0.01848, steps = 76 
    34531 shifted from previous position = 0.0186 
    34532 rotated from previous position = 0.0136 degrees 
    34533 atoms outside contour = 51931, contour level = 0.0029 
    34534  
    34535 Position of 7cbl.pdb (#36) relative to LP-ring.mrc gaussian (#15) coordinates: 
    34536 Matrix rotation and translation 
    34537 0.98107948 0.18742063 -0.04854515 -364.76747896 
    34538 0.18781829 -0.98219677 0.00372290 530.87666956 
    34539 -0.04698315 -0.01277014 -0.99881408 690.07249131 
    34540 Axis -0.99525856 -0.09425801 0.02399637 
    34541 Axis point 0.00000000 284.13118826 339.46925121 
    34542 Rotation angle (degrees) 179.52525271 
    34543 Shift along axis 329.55781165 
    34544  
    34545 
    34546 > ui mousemode right "rotate selected models"
    34547 
    34548 > view matrix models
    34549 > #36,0.97923,0.19635,0.050588,-399.23,0.19648,-0.9805,0.0024405,527.82,0.050081,0.0075498,-0.99872,650.67
    34550 
    34551 > view orient
    34552 
    34553 [Repeated 1 time(s)]
    34554 
    34555 > turn x 90
    34556 
    34557 [Repeated 2 time(s)]
    34558 
    34559 > turn y 90
    34560 
    34561 [Repeated 1 time(s)]
    34562 
    34563 > view matrix models
    34564 > #36,0.98047,0.1965,0.0085164,-386.07,0.19648,-0.9805,0.0024405,527.82,0.0088299,-0.0007195,-0.99996,667.68
    34565 
    34566 > turn y 90
    34567 
    34568 [Repeated 1 time(s)]
    34569 
    34570 > select clear
    34571 
    34572 > select add #36
    34573 
    34574 99242 atoms, 100516 bonds, 52 pseudobonds, 13390 residues, 2 models selected 
    34575 
    34576 > hide sel atoms
    34577 
    34578 > show sel cartoons
    34579 
    34580 > select clear
    34581 
    34582 [Repeated 1 time(s)]
    34583 
    34584 > view orient
    34585 
    34586 Drag select of Hp-FliF-comp_0 SES surface, 6028 of 308174 triangles, Hp-FliF-
    34587 comp_8 SES surface, 257 of 307462 triangles, Hp-FliF-comp_9 SES surface, 1366
    34588 of 307956 triangles, Hp-FliF-comp_AA SES surface, 519 of 307878 triangles, Hp-
    34589 FliF-comp_B SES surface, 2758 of 102586 triangles, Hp-FliF-comp_K SES surface,
    34590 4194 of 102380 triangles, Hp-FliF-comp_V SES surface, 2762 of 126200
    34591 triangles, Hp-FliF-comp_d SES surface, 80 of 126402 triangles, Hp-FliF-comp_e
    34592 SES surface, 1736 of 126996 triangles, Hp-FliF-comp_f SES surface, 2142 of
    34593 126310 triangles, Hp-FliF-comp_q SES surface, 84 of 307794 triangles, Hp-FliF-
    34594 comp_r SES surface, 2877 of 308144 triangles, Hp-FliF-comp_s SES surface, 8253
    34595 of 307492 triangles, 6021 residues, 22 pseudobonds 
    34596 
    34597 > select add #36
    34598 
    34599 99242 atoms, 100516 bonds, 52 pseudobonds, 13390 residues, 15 models selected 
    34600 
    34601 > hide sel cartoons
    34602 
    34603 > show sel surfaces
    34604 
    34605 > select clear
    34606 
    34607 Drag select of Hp-FliF-comp_0 SES surface, 8612 of 308174 triangles, Hp-FliF-
    34608 comp_7 SES surface, 45 of 307576 triangles, Hp-FliF-comp_8 SES surface, 458 of
    34609 307462 triangles, Hp-FliF-comp_9 SES surface, 1993 of 307956 triangles, Hp-
    34610 FliF-comp_AA SES surface, 1094 of 307878 triangles, Hp-FliF-comp_AR SES
    34611 surface, 87 of 308154 triangles, Hp-FliF-comp_AS SES surface, 41 of 307454
    34612 triangles, Hp-FliF-comp_B SES surface, 4026 of 102586 triangles, Hp-FliF-
    34613 comp_K SES surface, 5110 of 102380 triangles, Hp-FliF-comp_V SES surface, 3952
    34614 of 126200 triangles, Hp-FliF-comp_d SES surface, 251 of 126402 triangles, Hp-
    34615 FliF-comp_e SES surface, 2486 of 126996 triangles, Hp-FliF-comp_f SES surface,
    34616 2965 of 126310 triangles, Hp-FliF-comp_q SES surface, 442 of 307794 triangles,
    34617 Hp-FliF-comp_r SES surface, 4432 of 308144 triangles, Hp-FliF-comp_s SES
    34618 surface, 11349 of 307492 triangles, 7cbl.pdb_A SES surface, 196414 of 260654
    34619 triangles, 7cbl.pdb_B SES surface, 148709 of 260418 triangles, 7cbl.pdb_C SES
    34620 surface, 62358 of 261904 triangles, 7cbl.pdb_D SES surface, 209 of 260742
    34621 triangles, 7cbl.pdb_L SES surface, 1561 of 260934 triangles, 7cbl.pdb_M SES
    34622 surface, 23481 of 260974 triangles, 7cbl.pdb_N SES surface, 39311 of 261482
    34623 triangles, 7cbl.pdb_O SES surface, 54398 of 261300 triangles, 7cbl.pdb_P SES
    34624 surface, 75031 of 260648 triangles, 7cbl.pdb_Q SES surface, 166049 of 261816
    34625 triangles, 7cbl.pdb_R SES surface, 248845 of 261108 triangles, 7cbl.pdb_S SES
    34626 surface, 7cbl.pdb_T SES surface, 7cbl.pdb_U SES surface, 7cbl.pdb_V SES
    34627 surface, 7cbl.pdb_W SES surface, 7cbl.pdb_X SES surface, 248707 of 260098
    34628 triangles, 7cbl.pdb_Y SES surface, 226883 of 260558 triangles, 7cbl.pdb_Z SES
    34629 surface, 211544 of 261230 triangles, 7cbl.pdb_a SES surface, 275677 of 294626
    34630 triangles, 7cbl.pdb_b SES surface, 209108 of 294054 triangles, 7cbl.pdb_c SES
    34631 surface, 103190 of 294726 triangles, 7cbl.pdb_d SES surface, 5641 of 293734
    34632 triangles, 7cbl.pdb_o SES surface, 1360 of 294010 triangles, 7cbl.pdb_p SES
    34633 surface, 59071 of 294246 triangles, 7cbl.pdb_q SES surface, 157050 of 294206
    34634 triangles, 7cbl.pdb_r SES surface, 249024 of 294146 triangles, 7cbl.pdb_s SES
    34635 surface, 7cbl.pdb_t SES surface, 7cbl.pdb_u SES surface, 7cbl.pdb_v SES
    34636 surface, 7cbl.pdb_w SES surface, 7cbl.pdb_x SES surface, 7cbl.pdb_y SES
    34637 surface, 7cbl.pdb_z SES surface 
    34638 
    34639 > select clear
    34640 
    34641 > view orient
    34642 
    34643 > hide #!15 models
    34644 
    34645 > hide #!16 models
    34646 
    34647 > hide #!17 models
    34648 
    34649 > hide #!18 models
    34650 
    34651 > hide #!19 models
    34652 
    34653 > show #!15 models
    34654 
    34655 > hide #!20 models
    34656 
    34657 > hide #!21 models
    34658 
    34659 > hide #!22 models
    34660 
    34661 > hide #!24 models
    34662 
    34663 > hide #!25 models
    34664 
    34665 > hide #!26 models
    34666 
    34667 > hide #!27 models
    34668 
    34669 > show #!27 models
    34670 
    34671 > hide #!28 models
    34672 
    34673 > hide #!27 models
    34674 
    34675 > hide #!29 models
    34676 
    34677 > hide #!30 models
    34678 
    34679 > hide #!31 models
    34680 
    34681 > hide #!32 models
    34682 
    34683 > hide #!33 models
    34684 
    34685 > hide #!34 models
    34686 
    34687 > hide #!35 models
    34688 
    34689 > hide #!36 models
    34690 
    34691 > show #!36 models
    34692 
    34693 Drag select of 7cbl.pdb_A SES surface, 61024 of 260654 triangles, 7cbl.pdb_B
    34694 SES surface, 102410 of 260418 triangles, 7cbl.pdb_C SES surface, 193053 of
    34695 261904 triangles, 7cbl.pdb_D SES surface, 259705 of 260742 triangles,
    34696 7cbl.pdb_E SES surface, 7cbl.pdb_F SES surface, 7cbl.pdb_G SES surface,
    34697 7cbl.pdb_H SES surface, 7cbl.pdb_I SES surface, 7cbl.pdb_J SES surface,
    34698 7cbl.pdb_K SES surface, 7cbl.pdb_L SES surface, 253330 of 260934 triangles,
    34699 7cbl.pdb_M SES surface, 232905 of 260974 triangles, 7cbl.pdb_N SES surface,
    34700 217973 of 261482 triangles, 7cbl.pdb_O SES surface, 203923 of 261300
    34701 triangles, 7cbl.pdb_P SES surface, 177720 of 260648 triangles, 7cbl.pdb_Q SES
    34702 surface, 86697 of 261816 triangles, 7cbl.pdb_R SES surface, 9907 of 261108
    34703 triangles, 7cbl.pdb_X SES surface, 4385 of 260098 triangles, 7cbl.pdb_Y SES
    34704 surface, 28510 of 260558 triangles, 7cbl.pdb_Z SES surface, 45909 of 261230
    34705 triangles, 7cbl.pdb_a SES surface, 30285 of 294626 triangles, 7cbl.pdb_b SES
    34706 surface, 92255 of 294054 triangles, 7cbl.pdb_c SES surface, 203860 of 294726
    34707 triangles, 7cbl.pdb_d SES surface, 288442 of 293734 triangles, 7cbl.pdb_e SES
    34708 surface, 7cbl.pdb_f SES surface, 7cbl.pdb_g SES surface, 7cbl.pdb_h SES
    34709 surface, 7cbl.pdb_i SES surface, 7cbl.pdb_j SES surface, 7cbl.pdb_k SES
    34710 surface, 7cbl.pdb_l SES surface, 7cbl.pdb_m SES surface, 7cbl.pdb_n SES
    34711 surface, 7cbl.pdb_o SES surface, 7cbl.pdb_p SES surface, 248362 of 294246
    34712 triangles, 7cbl.pdb_q SES surface, 146650 of 294206 triangles, 7cbl.pdb_r SES
    34713 surface, 51098 of 294146 triangles, 15 LP-ring.mrc gaussian 
    34714 
    34715 > hide #!36 cartoons
    34716 
    34717 > hide #!36 surfaces
    34718 
    34719 > show #!36 surfaces
    34720 
    34721 The cached device pixel ratio value was stale on window expose. Please file a
    34722 QTBUG which explains how to reproduce. 
    34723 
    34724 > select clear
    34725 
    34726 [Repeated 1 time(s)]Drag select of 7cbl.pdb_A SES surface, 197163 of 260654
    34727 triangles, 7cbl.pdb_B SES surface, 151113 of 260418 triangles, 7cbl.pdb_C SES
    34728 surface, 63838 of 261904 triangles, 7cbl.pdb_D SES surface, 373 of 260742
    34729 triangles, 7cbl.pdb_L SES surface, 2822 of 260934 triangles, 7cbl.pdb_M SES
    34730 surface, 24778 of 260974 triangles, 7cbl.pdb_N SES surface, 40288 of 261482
    34731 triangles, 7cbl.pdb_O SES surface, 55033 of 261300 triangles, 7cbl.pdb_P SES
    34732 surface, 76588 of 260648 triangles, 7cbl.pdb_Q SES surface, 169195 of 261816
    34733 triangles, 7cbl.pdb_R SES surface, 250270 of 261108 triangles, 7cbl.pdb_S SES
    34734 surface, 7cbl.pdb_T SES surface, 7cbl.pdb_U SES surface, 7cbl.pdb_V SES
    34735 surface, 7cbl.pdb_W SES surface, 7cbl.pdb_X SES surface, 249974 of 260098
    34736 triangles, 7cbl.pdb_Y SES surface, 227596 of 260558 triangles, 7cbl.pdb_Z SES
    34737 surface, 212233 of 261230 triangles, 7cbl.pdb_a SES surface, 274902 of 294626
    34738 triangles, 7cbl.pdb_b SES surface, 208716 of 294054 triangles, 7cbl.pdb_c SES
    34739 surface, 103666 of 294726 triangles, 7cbl.pdb_d SES surface, 5923 of 293734
    34740 triangles, 7cbl.pdb_o SES surface, 974 of 294010 triangles, 7cbl.pdb_p SES
    34741 surface, 58312 of 294246 triangles, 7cbl.pdb_q SES surface, 156995 of 294206
    34742 triangles, 7cbl.pdb_r SES surface, 249259 of 294146 triangles, 7cbl.pdb_s SES
    34743 surface, 7cbl.pdb_t SES surface, 7cbl.pdb_u SES surface, 7cbl.pdb_v SES
    34744 surface, 7cbl.pdb_w SES surface, 7cbl.pdb_x SES surface, 7cbl.pdb_y SES
    34745 surface, 7cbl.pdb_z SES surface 
    34746 
    34747 > hide #!36 cartoons
    34748 
    34749 [Repeated 1 time(s)]
    34750 
    34751 > hide #!36 surfaces
    34752 
    34753 > show #!36 surfaces
    34754 
    34755 > hide #!15 models
    34756 
    34757 Drag select of 7cbl.pdb_A SES surface, 199076 of 260654 triangles, 7cbl.pdb_B
    34758 SES surface, 158273 of 260418 triangles, 7cbl.pdb_C SES surface, 68832 of
    34759 261904 triangles, 7cbl.pdb_D SES surface, 3423 of 260742 triangles, 7cbl.pdb_L
    34760 SES surface, 4187 of 260934 triangles, 7cbl.pdb_M SES surface, 25974 of 260974
    34761 triangles, 7cbl.pdb_N SES surface, 41975 of 261482 triangles, 7cbl.pdb_O SES
    34762 surface, 56368 of 261300 triangles, 7cbl.pdb_P SES surface, 81787 of 260648
    34763 triangles, 7cbl.pdb_Q SES surface, 179929 of 261816 triangles, 7cbl.pdb_R SES
    34764 surface, 256994 of 261108 triangles, 7cbl.pdb_S SES surface, 7cbl.pdb_T SES
    34765 surface, 7cbl.pdb_U SES surface, 7cbl.pdb_V SES surface, 7cbl.pdb_W SES
    34766 surface, 7cbl.pdb_X SES surface, 251898 of 260098 triangles, 7cbl.pdb_Y SES
    34767 surface, 229243 of 260558 triangles, 7cbl.pdb_Z SES surface, 213592 of 261230
    34768 triangles, 7cbl.pdb_a SES surface, 280602 of 294626 triangles, 7cbl.pdb_b SES
    34769 surface, 217020 of 294054 triangles, 7cbl.pdb_c SES surface, 118932 of 294726
    34770 triangles, 7cbl.pdb_d SES surface, 9141 of 293734 triangles, 7cbl.pdb_o SES
    34771 surface, 3185 of 294010 triangles, 7cbl.pdb_p SES surface, 65819 of 294246
    34772 triangles, 7cbl.pdb_q SES surface, 165577 of 294206 triangles, 7cbl.pdb_r SES
    34773 surface, 254701 of 294146 triangles, 7cbl.pdb_s SES surface, 7cbl.pdb_t SES
    34774 surface, 7cbl.pdb_u SES surface, 7cbl.pdb_v SES surface, 7cbl.pdb_w SES
    34775 surface, 7cbl.pdb_x SES surface, 7cbl.pdb_y SES surface, 7cbl.pdb_z SES
    34776 surface 
    34777 
    34778 > select clear
    34779 
    34780 Drag select of 7cbl.pdb_A SES surface, 204662 of 260654 triangles, 7cbl.pdb_B
    34781 SES surface, 184165 of 260418 triangles, 7cbl.pdb_C SES surface, 98778 of
    34782 261904 triangles, 7cbl.pdb_D SES surface, 26869 of 260742 triangles,
    34783 7cbl.pdb_L SES surface, 11362 of 260934 triangles, 7cbl.pdb_M SES surface,
    34784 31859 of 260974 triangles, 7cbl.pdb_N SES surface, 47755 of 261482 triangles,
    34785 7cbl.pdb_O SES surface, 62792 of 261300 triangles, 7cbl.pdb_P SES surface,
    34786 113171 of 260648 triangles, 7cbl.pdb_Q SES surface, 202809 of 261816
    34787 triangles, 7cbl.pdb_R SES surface, 7cbl.pdb_S SES surface, 7cbl.pdb_T SES
    34788 surface, 7cbl.pdb_U SES surface, 7cbl.pdb_V SES surface, 7cbl.pdb_W SES
    34789 surface, 7cbl.pdb_X SES surface, 259223 of 260098 triangles, 7cbl.pdb_Y SES
    34790 surface, 236028 of 260558 triangles, 7cbl.pdb_Z SES surface, 219836 of 261230
    34791 triangles, 7cbl.pdb_a SES surface, 292754 of 294626 triangles, 7cbl.pdb_b SES
    34792 surface, 239690 of 294054 triangles, 7cbl.pdb_c SES surface, 164138 of 294726
    34793 triangles, 7cbl.pdb_d SES surface, 39856 of 293734 triangles, 7cbl.pdb_o SES
    34794 surface, 20901 of 294010 triangles, 7cbl.pdb_p SES surface, 99572 of 294246
    34795 triangles, 7cbl.pdb_q SES surface, 201882 of 294206 triangles, 7cbl.pdb_r SES
    34796 surface, 282357 of 294146 triangles, 7cbl.pdb_s SES surface, 7cbl.pdb_t SES
    34797 surface, 7cbl.pdb_u SES surface, 292711 of 293402 triangles, 7cbl.pdb_v SES
    34798 surface, 285896 of 295054 triangles, 7cbl.pdb_w SES surface, 279452 of 294020
    34799 triangles, 7cbl.pdb_x SES surface, 292892 of 293348 triangles, 7cbl.pdb_y SES
    34800 surface, 7cbl.pdb_z SES surface 
    34801 
    34802 > select clear
    34803 
    34804 > select add #36
    34805 
    34806 99242 atoms, 100516 bonds, 52 pseudobonds, 13390 residues, 2 models selected 
    34807 
    34808 > hide sel surfaces
    34809 
    34810 [Repeated 1 time(s)]
    34811 
    34812 > show sel cartoons
    34813 
    34814 > select clear
    34815 
    34816 Drag select of 6265 residues, 23 pseudobonds 
    34817 
    34818 > select clear
    34819 
    34820 > show #!15 models
    34821 
    34822 Drag select of 15 LP-ring.mrc gaussian , 7309 residues, 29 pseudobonds 
    34823 
    34824 > show sel surfaces
    34825 
    34826 > select add #36
    34827 
    34828 99242 atoms, 100516 bonds, 52 pseudobonds, 13390 residues, 42 models selected 
    34829 
    34830 > hide sel cartoons
    34831 
    34832 > select clear
    34833 
    34834 > color #36 #92aa93ff models
    34835 
    34836 > hide #!15 models
    34837 
    34838 > show #!35 models
    34839 
    34840 The cached device pixel ratio value was stale on window expose. Please file a
    34841 QTBUG which explains how to reproduce. 
    34842 
    34843 > show #!18-35 models
    34844 
    34845 > hide #!23 models
    34846 
    34847 > show #!17 models
    34848 
    34849 > show #!16 models
    34850 
    34851 > show #!13 models
    34852 
    34853 > show #!12 models
    34854 
    34855 > view orient
    34856 
    34857 > turn x 90
    34858 
    34859 [Repeated 2 time(s)]
    34860 
    34861 > turn z -0.1
    34862 
    34863 [Repeated 4 time(s)]
    34864 
    34865 > ui tool show "Side View"
    34866 
    34867 > View name Side1
    34868 
    34869 Unknown command: View name Side1 
    34870 
    34871 > view name Side1
    34872 
    34873 > turn x 45
    34874 
    34875 > view name Tilt45
    34876 
    34877 > hide #!12 models
    34878 
    34879 > hide #!13 models
    34880 
    34881 > save /Users/shoichitachiyama/Desktop/CJ-local-tilt45_08242024.png
    34882 > supersample 2 transparentBackground true
    34883 
    34884 > view Side1
    34885 
    34886 > turn x 90
    34887 
    34888 > save /Users/shoichitachiyama/Desktop/CJ-local-Top_08242024.png supersample 2
    34889 > transparentBackground true
    34890 
    34891 > save /Users/shoichitachiyama/Desktop/CJ-local-Top2_08242024.png supersample
    34892 > 2 transparentBackground true
    34893 
    34894 > view Side1
    34895 
    34896 > show #!12 models
    34897 
    34898 > show #!13 models
    34899 
    34900 > save /Users/shoichitachiyama/Desktop/CJ-local-Side_08242024.png supersample
    34901 > 2 transparentBackground true
    34902 
    34903 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    34904 > manuscript/Start_Aug_2024/Local-ref-PflAB/Develop-model-Figure.cxs
    34905 > includeMaps true
    34906 
    34907 ——— End of log from Sat Aug 24 21:36:37 2024 ———
    34908 
    34909 opened ChimeraX session 
    34910 
    34911 > hide #!12 models
    34912 
    34913 > show #!12 models
    34914 
    34915 > hide #!13 models
    34916 
    34917 > hide #!12 models
    34918 
    34919 > hide #!16 models
    34920 
    34921 > show #!16 models
    34922 
    34923 > hide #!17 models
    34924 
    34925 > hide #!18 models
    34926 
    34927 > hide #!19 models
    34928 
    34929 > hide #!20 models
    34930 
    34931 > show #!20 models
    34932 
    34933 > hide #!20 models
    34934 
    34935 > hide #!21 models
    34936 
    34937 > show #!21 models
    34938 
    34939 > hide #!22 models
    34940 
    34941 > show #!22 models
    34942 
    34943 > hide #!22 models
    34944 
    34945 > hide #!24 models
    34946 
    34947 > hide #!33 models
    34948 
    34949 > hide #!34 models
    34950 
    34951 > hide #!35 models
    34952 
    34953 > hide #!21 models
    34954 
    34955 > hide #!32 models
    34956 
    34957 > show #!32 models
    34958 
    34959 > hide #!32 models
    34960 
    34961 > close session
    34962 
    34963 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    34964 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    34965 > refinment/For-Chimera-PflAB/Rev-CJFlgYPlfAB-msk-2.1A.mrc"
    34966 
    34967 Opened Rev-CJFlgYPlfAB-msk-2.1A.mrc as #1, grid size 200,200,200, pixel 2.14,
    34968 shown at level 0.047, step 1, values float32 
    34969 
    34970 > volume #1 level 0.002308
    34971 
    34972 > volume #1 level 0.001238
    34973 
    34974 > ui tool show "Segment Map"
    34975 
    34976 Segmenting Rev-CJFlgYPlfAB-msk-2.1A.mrc, density threshold 0.001238 
    34977 Showing 336 region surfaces 
    34978 6595 watershed regions, grouped to 336 regions 
    34979 Showing Rev-CJFlgYPlfAB-msk-2.1A.seg - 336 regions, 336 surfaces 
    34980 
    34981 > select #2.52
    34982 
    34983 1 model selected 
    34984 
    34985 > select add #2.224
    34986 
    34987 2 models selected 
    34988 
    34989 > select add #2.191
    34990 
    34991 3 models selected 
    34992 
    34993 > select add #2.20
    34994 
    34995 4 models selected 
    34996 
    34997 > select add #2.7
    34998 
    34999 5 models selected 
    35000 
    35001 > hide #!1 models
    35002 
    35003 Grouped 5 regions 
    35004 
    35005 > select add #2.11
    35006 
    35007 2 models selected 
    35008 Grouped 2 regions 
    35009 
    35010 The cached device pixel ratio value was stale on window expose. Please file a
    35011 QTBUG which explains how to reproduce. 
    35012 
    35013 Opened Rev-CJFlgYPlfAB-msk-2.1A_imasked as #3, grid size 200,200,200, pixel
    35014 2.14, shown at step 1, values float32 
    35015 
    35016 The cached device pixel ratio value was stale on window expose. Please file a
    35017 QTBUG which explains how to reproduce. 
    35018 
    35019 [Repeated 2 time(s)]
    35020 
    35021 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/LP-ring.mrc
    35022 > models #3
    35023 
    35024 The cached device pixel ratio value was stale on window expose. Please file a
    35025 QTBUG which explains how to reproduce. 
    35026 
    35027 Opened Rev-CJFlgYPlfAB-msk-2.1A_imasked as #4, grid size 200,200,200, pixel
    35028 2.14, shown at step 1, values float32 
    35029 Segmenting Rev-CJFlgYPlfAB-msk-2.1A_imasked, density threshold 0.001238 
    35030 Showing 330 region surfaces 
    35031 6371 watershed regions, grouped to 330 regions 
    35032 Showing Rev-CJFlgYPlfAB-msk-2.seg - 330 regions, 330 surfaces 
    35033 
    35034 > hide #!4 models
    35035 
    35036 > hide #!3 models
    35037 
    35038 > select #2.160
    35039 
    35040 1 model selected 
    35041 
    35042 > select add #2.5
    35043 
    35044 2 models selected 
    35045 
    35046 > select add #2.107
    35047 
    35048 3 models selected 
    35049 
    35050 > select add #2.15
    35051 
    35052 4 models selected 
    35053 Grouped 4 regions 
    35054 
    35055 > select add #2.44
    35056 
    35057 2 models selected 
    35058 
    35059 > select subtract #2.44
    35060 
    35061 1 model selected 
    35062 Opened Rev-CJFlgYPlfAB-msk-2_imasked as #5, grid size 200,200,200, pixel 2.14,
    35063 shown at step 1, values float32 
    35064 
    35065 The cached device pixel ratio value was stale on window expose. Please file a
    35066 QTBUG which explains how to reproduce. 
    35067 
    35068 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/Other.mrc
    35069 > models #5
    35070 
    35071 Opened Rev-CJFlgYPlfAB-msk-2_imasked as #6, grid size 200,200,200, pixel 2.14,
    35072 shown at step 1, values float32 
    35073 Segmenting Rev-CJFlgYPlfAB-msk-2_imasked, density threshold 0.001238 
    35074 Showing 326 region surfaces 
    35075 6227 watershed regions, grouped to 326 regions 
    35076 Showing Rev-CJFlgYPlfAB-msk-2_imasked.seg - 326 regions, 326 surfaces 
    35077 
    35078 > hide #!5 models
    35079 
    35080 > select #2.42
    35081 
    35082 1 model selected 
    35083 
    35084 > select add #2.182
    35085 
    35086 2 models selected 
    35087 
    35088 > select add #2.197
    35089 
    35090 3 models selected 
    35091 
    35092 > select add #2.156
    35093 
    35094 4 models selected 
    35095 
    35096 > select add #2.132
    35097 
    35098 5 models selected 
    35099 
    35100 > select add #2.85
    35101 
    35102 6 models selected 
    35103 
    35104 > select add #2.69
    35105 
    35106 7 models selected 
    35107 
    35108 > select add #2.72
    35109 
    35110 8 models selected 
    35111 
    35112 > select add #2.245
    35113 
    35114 9 models selected 
    35115 
    35116 > select add #2.195
    35117 
    35118 10 models selected 
    35119 
    35120 > select add #2.171
    35121 
    35122 11 models selected 
    35123 
    35124 > select add #2.151
    35125 
    35126 12 models selected 
    35127 
    35128 > select add #2.78
    35129 
    35130 13 models selected 
    35131 
    35132 > select add #2.117
    35133 
    35134 14 models selected 
    35135 
    35136 > select add #2.193
    35137 
    35138 15 models selected 
    35139 
    35140 > select add #2.209
    35141 
    35142 16 models selected 
    35143 
    35144 > select add #2.212
    35145 
    35146 17 models selected 
    35147 
    35148 > select add #2.191
    35149 
    35150 18 models selected 
    35151 
    35152 > select add #2.226
    35153 
    35154 19 models selected 
    35155 
    35156 > select add #2.161
    35157 
    35158 20 models selected 
    35159 
    35160 > select add #2.127
    35161 
    35162 21 models selected 
    35163 
    35164 > select add #2.141
    35165 
    35166 22 models selected 
    35167 
    35168 > select add #2.146
    35169 
    35170 23 models selected 
    35171 
    35172 > select add #2.76
    35173 
    35174 24 models selected 
    35175 
    35176 > hide #!6 models
    35177 
    35178 > select add #2.252
    35179 
    35180 25 models selected 
    35181 
    35182 > select add #2.260
    35183 
    35184 26 models selected 
    35185 
    35186 > select add #2.292
    35187 
    35188 27 models selected 
    35189 
    35190 > select add #2.110
    35191 
    35192 28 models selected 
    35193 
    35194 > select add #2.261
    35195 
    35196 29 models selected 
    35197 
    35198 > select add #2.241
    35199 
    35200 30 models selected 
    35201 
    35202 > select add #2.190
    35203 
    35204 31 models selected 
    35205 
    35206 > select add #2.131
    35207 
    35208 32 models selected 
    35209 
    35210 > select add #2.214
    35211 
    35212 33 models selected 
    35213 
    35214 > select add #2.159
    35215 
    35216 34 models selected 
    35217 
    35218 > select add #2.123
    35219 
    35220 35 models selected 
    35221 
    35222 > select add #2.97
    35223 
    35224 36 models selected 
    35225 
    35226 > select add #2.263
    35227 
    35228 37 models selected 
    35229 
    35230 > select add #2.256
    35231 
    35232 38 models selected 
    35233 
    35234 > select add #2.8
    35235 
    35236 39 models selected 
    35237 
    35238 > select add #2.106
    35239 
    35240 40 models selected 
    35241 
    35242 > select add #2.66
    35243 
    35244 41 models selected 
    35245 
    35246 > select add #2.273
    35247 
    35248 42 models selected 
    35249 
    35250 > select add #2.270
    35251 
    35252 43 models selected 
    35253 
    35254 > select add #2.246
    35255 
    35256 44 models selected 
    35257 
    35258 > select add #2.183
    35259 
    35260 45 models selected 
    35261 
    35262 > select add #2.138
    35263 
    35264 46 models selected 
    35265 
    35266 > select add #2.208
    35267 
    35268 47 models selected 
    35269 Grouped 47 regions 
    35270 Opened Rev-CJFlgYPlfAB-msk-2_imasked_imasked as #7, grid size 200,200,200,
    35271 pixel 2.14, shown at step 1, values float32 
    35272 
    35273 The cached device pixel ratio value was stale on window expose. Please file a
    35274 QTBUG which explains how to reproduce. 
    35275 
    35276 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/Basal-
    35277 > disk.mrc models #7
    35278 
    35279 Opened Rev-CJFlgYPlfAB-msk-2_imasked_imasked as #8, grid size 200,200,200,
    35280 pixel 2.14, shown at step 1, values float32 
    35281 Segmenting Rev-CJFlgYPlfAB-msk-2_imasked_imasked, density threshold 0.001238 
    35282 Showing 279 region surfaces 
    35283 5451 watershed regions, grouped to 279 regions 
    35284 Showing Rev-CJFlgYPlfAB-msk-2_imasked_imasked.seg - 279 regions, 279 surfaces 
    35285 
    35286 > hide #!7 models
    35287 
    35288 > hide #!8 models
    35289 
    35290 Drag select of 7449, 12517 of 12600 triangles, 7491, 9665 of 9824 triangles,
    35291 7584, 7688, 7659, 7229, 6847, 3925 of 4688 triangles, 7197, 6853, 1512 of 4224
    35292 triangles, 6825, 1357 of 4016 triangles, 6739, 1277 of 3888 triangles, 7205,
    35293 3917 of 3976 triangles, 6098, 811 of 3972 triangles, 7562, 550 of 4888
    35294 triangles, 7448, 5755, 2371 of 3760 triangles, 6371, 58 of 3076 triangles,
    35295 7476, 7706, 57 of 3484 triangles, 7598, 557 of 3328 triangles, 7639, 7605,
    35296 7539, 1984 of 2320 triangles, 6010, 7350, 5448, 7351, 7602, 2872 
    35297 
    35298 > select add #2.267
    35299 
    35300 30 models selected 
    35301 
    35302 > select add #2.252
    35303 
    35304 31 models selected 
    35305 Grouped 31 regions 
    35306 
    35307 > select clear
    35308 
    35309 > select #2.152
    35310 
    35311 1 model selected 
    35312 Opened Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked as #9, grid size
    35313 200,200,200, pixel 2.14, shown at step 1, values float32 
    35314 Segmenting Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked, density threshold
    35315 0.001238 
    35316 Showing 248 region surfaces 
    35317 5248 watershed regions, grouped to 248 regions 
    35318 Showing Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked.seg - 248 regions, 248
    35319 surfaces 
    35320 
    35321 > select #2.86
    35322 
    35323 1 model selected 
    35324 
    35325 > select add #2.53
    35326 
    35327 2 models selected 
    35328 
    35329 > select add #2.141
    35330 
    35331 3 models selected 
    35332 
    35333 > select add #2.4
    35334 
    35335 4 models selected 
    35336 
    35337 > select add #2.99
    35338 
    35339 5 models selected 
    35340 
    35341 > select add #2.161
    35342 
    35343 6 models selected 
    35344 
    35345 > select add #2.88
    35346 
    35347 7 models selected 
    35348 
    35349 > select add #2.25
    35350 
    35351 8 models selected 
    35352 
    35353 > select add #2.118
    35354 
    35355 9 models selected 
    35356 
    35357 > select add #2.75
    35358 
    35359 10 models selected 
    35360 
    35361 > select add #2.56
    35362 
    35363 11 models selected 
    35364 
    35365 > select add #2.148
    35366 
    35367 12 models selected 
    35368 
    35369 > select add #2.73
    35370 
    35371 13 models selected 
    35372 
    35373 > select add #2.32
    35374 
    35375 14 models selected 
    35376 
    35377 > select add #2.144
    35378 
    35379 15 models selected 
    35380 
    35381 > select add #2.101
    35382 
    35383 16 models selected 
    35384 
    35385 > select add #2.46
    35386 
    35387 17 models selected 
    35388 
    35389 > select add #2.155
    35390 
    35391 18 models selected 
    35392 
    35393 > select add #2.89
    35394 
    35395 19 models selected 
    35396 
    35397 > select add #2.95
    35398 
    35399 20 models selected 
    35400 
    35401 > select add #2.34
    35402 
    35403 21 models selected 
    35404 
    35405 > select add #2.152
    35406 
    35407 22 models selected 
    35408 
    35409 > select add #2.110
    35410 
    35411 23 models selected 
    35412 
    35413 > select add #2.12
    35414 
    35415 24 models selected 
    35416 
    35417 > select add #2.137
    35418 
    35419 25 models selected 
    35420 
    35421 > select add #2.16
    35422 
    35423 26 models selected 
    35424 
    35425 > select add #2.97
    35426 
    35427 27 models selected 
    35428 
    35429 > select add #2.96
    35430 
    35431 28 models selected 
    35432 
    35433 > select add #2.170
    35434 
    35435 29 models selected 
    35436 
    35437 > select add #2.178
    35438 
    35439 30 models selected 
    35440 
    35441 > select add #2.47
    35442 
    35443 31 models selected 
    35444 
    35445 > select add #2.87
    35446 
    35447 32 models selected 
    35448 
    35449 > select add #2.43
    35450 
    35451 33 models selected 
    35452 
    35453 > select add #2.100
    35454 
    35455 34 models selected 
    35456 
    35457 > select add #2.90
    35458 
    35459 35 models selected 
    35460 
    35461 > select add #2.146
    35462 
    35463 36 models selected 
    35464 
    35465 > hide #!9 models
    35466 
    35467 Grouped 36 regions 
    35468 
    35469 > select clear
    35470 
    35471 > select #2.4
    35472 
    35473 1 model selected 
    35474 
    35475 > select clear
    35476 
    35477 > select #2.4
    35478 
    35479 1 model selected 
    35480 Opened Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked_imasked as #10, grid size
    35481 200,200,200, pixel 2.14, shown at step 1, values float32 
    35482 
    35483 The cached device pixel ratio value was stale on window expose. Please file a
    35484 QTBUG which explains how to reproduce. 
    35485 
    35486 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/PflC.mrc
    35487 > models #10
    35488 
    35489 Opened Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked_imasked as #11, grid size
    35490 200,200,200, pixel 2.14, shown at step 1, values float32 
    35491 Segmenting Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked_imasked, density
    35492 threshold 0.001238 
    35493 Showing 213 region surfaces 
    35494 4519 watershed regions, grouped to 213 regions 
    35495 Showing Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked_imasked.seg - 213
    35496 regions, 213 surfaces 
    35497 
    35498 > hide #!10 models
    35499 
    35500 > hide #!11 models
    35501 
    35502 > select #2.100
    35503 
    35504 1 model selected 
    35505 
    35506 > select add #2.92
    35507 
    35508 2 models selected 
    35509 
    35510 > select add #2.80
    35511 
    35512 3 models selected 
    35513 Grouped 3 regions 
    35514 Opened Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked_imasked_imasked as #12,
    35515 grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    35516 
    35517 The cached device pixel ratio value was stale on window expose. Please file a
    35518 QTBUG which explains how to reproduce. 
    35519 
    35520 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/PflD.mrc
    35521 > models #12
    35522 
    35523 Opened Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked_imasked_imasked as #13,
    35524 grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    35525 Segmenting Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked_imasked_imasked,
    35526 density threshold 0.001238 
    35527 Showing 210 region surfaces 
    35528 4459 watershed regions, grouped to 210 regions 
    35529 Showing Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked_imasked_imasked.seg -
    35530 210 regions, 210 surfaces 
    35531 
    35532 > hide #!12 models
    35533 
    35534 > hide #!13 models
    35535 
    35536 > show #!13 models
    35537 
    35538 > hide #!13 models
    35539 
    35540 > select #2.70
    35541 
    35542 1 model selected 
    35543 
    35544 > select add #2.54
    35545 
    35546 2 models selected 
    35547 
    35548 > select add #2.56
    35549 
    35550 3 models selected 
    35551 
    35552 > select add #2.39
    35553 
    35554 4 models selected 
    35555 Opened Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked_imasked_imasked_imasked
    35556 as #14, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    35557 
    35558 The cached device pixel ratio value was stale on window expose. Please file a
    35559 QTBUG which explains how to reproduce. 
    35560 
    35561 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/MotBpg.mrc
    35562 > models #14
    35563 
    35564 Opened Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked_imasked_imasked_imasked
    35565 as #15, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    35566 Segmenting Rev-CJFlgYPlfAB-
    35567 msk-2_imasked_imasked_imasked_imasked_imasked_imasked, density threshold
    35568 0.001238 
    35569 Showing 206 region surfaces 
    35570 4420 watershed regions, grouped to 206 regions 
    35571 Showing Rev-CJFlgYPlfAB-
    35572 msk-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 206 regions, 206
    35573 surfaces 
    35574 
    35575 > hide #!14 models
    35576 
    35577 > select #2.44
    35578 
    35579 1 model selected 
    35580 Ungrouped to 3 regions 
    35581 Ungrouped to 10 regions 
    35582 
    35583 > select #2.213
    35584 
    35585 1 model selected 
    35586 
    35587 > select add #2.212
    35588 
    35589 2 models selected 
    35590 
    35591 > select add #2.217
    35592 
    35593 3 models selected 
    35594 
    35595 > select add #2.216
    35596 
    35597 4 models selected 
    35598 
    35599 > select add #2.100
    35600 
    35601 5 models selected 
    35602 
    35603 > hide #!15 models
    35604 
    35605 > select add #2.44
    35606 
    35607 6 models selected 
    35608 
    35609 > select subtract #2.212
    35610 
    35611 5 models selected 
    35612 
    35613 > select add #2.212
    35614 
    35615 6 models selected 
    35616 
    35617 > select add #2.211
    35618 
    35619 7 models selected 
    35620 Grouped 7 regions 
    35621 
    35622 > select add #2.68
    35623 
    35624 2 models selected 
    35625 Grouped 2 regions 
    35626 
    35627 > select add #2.218
    35628 
    35629 2 models selected 
    35630 Grouped 2 regions 
    35631 
    35632 > select clear
    35633 
    35634 > select #2.137
    35635 
    35636 1 model selected 
    35637 
    35638 > select #2.117
    35639 
    35640 1 model selected 
    35641 Ungrouped to 2 regions 
    35642 Ungrouped to 5 regions 
    35643 [Repeated 1 time(s)]
    35644 
    35645 > select #2.212
    35646 
    35647 1 model selected 
    35648 
    35649 > select add #2.117
    35650 
    35651 2 models selected 
    35652 
    35653 > select add #2.137
    35654 
    35655 3 models selected 
    35656 
    35657 > select add #2.99
    35658 
    35659 4 models selected 
    35660 
    35661 > select add #2.59
    35662 
    35663 5 models selected 
    35664 Grouped 5 regions 
    35665 
    35666 > select #2.86
    35667 
    35668 1 model selected 
    35669 Ungrouped to 4 regions 
    35670 Ungrouped to 10 regions 
    35671 Ungrouped to 7 regions 
    35672 Ungrouped to 0 regions 
    35673 
    35674 > select #2.207
    35675 
    35676 1 model selected 
    35677 
    35678 > select add #2.220
    35679 
    35680 2 models selected 
    35681 
    35682 > select add #2.99
    35683 
    35684 3 models selected 
    35685 
    35686 > select add #2.224
    35687 
    35688 4 models selected 
    35689 
    35690 > select add #2.225
    35691 
    35692 5 models selected 
    35693 
    35694 > select add #2.227
    35695 
    35696 6 models selected 
    35697 
    35698 > select add #2.72
    35699 
    35700 7 models selected 
    35701 
    35702 > select add #2.58
    35703 
    35704 8 models selected 
    35705 Grouped 8 regions 
    35706 
    35707 > select add #2.59
    35708 
    35709 2 models selected 
    35710 
    35711 > select #2.230
    35712 
    35713 1 model selected 
    35714 
    35715 > select #2.228
    35716 
    35717 1 model selected 
    35718 
    35719 > select #2.83
    35720 
    35721 1 model selected 
    35722 Ungrouped to 5 regions 
    35723 Ungrouped to 8 regions 
    35724 Ungrouped to 9 regions 
    35725 Ungrouped to 0 regions 
    35726 
    35727 > select #2.224
    35728 
    35729 1 model selected 
    35730 
    35731 > select add #2.221
    35732 
    35733 2 models selected 
    35734 
    35735 > select add #2.234
    35736 
    35737 3 models selected 
    35738 
    35739 > select add #2.236
    35740 
    35741 4 models selected 
    35742 
    35743 > select add #2.99
    35744 
    35745 5 models selected 
    35746 
    35747 > select add #2.71
    35748 
    35749 6 models selected 
    35750 
    35751 > select #2.50
    35752 
    35753 1 model selected 
    35754 
    35755 > select add #2.71
    35756 
    35757 2 models selected 
    35758 
    35759 > select add #2.236
    35760 
    35761 3 models selected 
    35762 
    35763 > select add #2.221
    35764 
    35765 4 models selected 
    35766 
    35767 > select #2.50
    35768 
    35769 1 model selected 
    35770 
    35771 > select add #2.71
    35772 
    35773 2 models selected 
    35774 
    35775 > select add #2.221
    35776 
    35777 3 models selected 
    35778 
    35779 > select add #2.236
    35780 
    35781 4 models selected 
    35782 
    35783 > select add #2.224
    35784 
    35785 5 models selected 
    35786 
    35787 > select add #2.234
    35788 
    35789 6 models selected 
    35790 
    35791 > select add #2.99
    35792 
    35793 7 models selected 
    35794 
    35795 > select add #2.237
    35796 
    35797 8 models selected 
    35798 Grouped 8 regions 
    35799 
    35800 > select add #2.58
    35801 
    35802 2 models selected 
    35803 Grouped 2 regions 
    35804 
    35805 > select add #2.59
    35806 
    35807 2 models selected 
    35808 
    35809 > select add #2.44
    35810 
    35811 3 models selected 
    35812 Grouped 3 regions 
    35813 
    35814 > select #2.54
    35815 
    35816 1 model selected 
    35817 
    35818 > select #2.54
    35819 
    35820 1 model selected 
    35821 Ungrouped to 5 regions 
    35822 Ungrouped to 7 regions 
    35823 Ungrouped to 12 regions 
    35824 Ungrouped to 0 regions 
    35825 
    35826 > select #2.237
    35827 
    35828 1 model selected 
    35829 
    35830 > select #2.71
    35831 
    35832 1 model selected 
    35833 
    35834 > select add #2.237
    35835 
    35836 2 models selected 
    35837 
    35838 > select add #2.244
    35839 
    35840 3 models selected 
    35841 
    35842 > select add #2.243
    35843 
    35844 4 models selected 
    35845 
    35846 > select add #2.226
    35847 
    35848 5 models selected 
    35849 
    35850 > select add #2.242
    35851 
    35852 6 models selected 
    35853 
    35854 > select add #2.69
    35855 
    35856 7 models selected 
    35857 
    35858 > select add #2.70
    35859 
    35860 8 models selected 
    35861 
    35862 > select add #2.193
    35863 
    35864 9 models selected 
    35865 
    35866 > select add #2.44
    35867 
    35868 10 models selected 
    35869 Grouped 10 regions 
    35870 
    35871 > select #2.82
    35872 
    35873 1 model selected 
    35874 
    35875 > select add #2.123
    35876 
    35877 2 models selected 
    35878 
    35879 > select add #2.29
    35880 
    35881 3 models selected 
    35882 
    35883 > select add #2.76
    35884 
    35885 4 models selected 
    35886 
    35887 > select add #2.166
    35888 
    35889 5 models selected 
    35890 
    35891 > select add #2.135
    35892 
    35893 6 models selected 
    35894 
    35895 > select add #2.170
    35896 
    35897 7 models selected 
    35898 
    35899 > select #2.76
    35900 
    35901 1 model selected 
    35902 
    35903 > select add #2.29
    35904 
    35905 2 models selected 
    35906 
    35907 > select subtract #2.77
    35908 
    35909 232 models selected 
    35910 
    35911 > select subtract #2.30
    35912 
    35913 231 models selected 
    35914 
    35915 > select subtract #2.166
    35916 
    35917 230 models selected 
    35918 
    35919 > select subtract #2.168
    35920 
    35921 229 models selected 
    35922 Grouped 229 regions 
    35923 
    35924 > undo
    35925 
    35926 Ungrouped to 233 regions 
    35927 
    35928 > select clear
    35929 
    35930 > select #2.30
    35931 
    35932 1 model selected 
    35933 
    35934 > select add #2.77
    35935 
    35936 2 models selected 
    35937 
    35938 > select add #2.29
    35939 
    35940 3 models selected 
    35941 
    35942 > select add #2.76
    35943 
    35944 4 models selected 
    35945 
    35946 > select add #2.166
    35947 
    35948 5 models selected 
    35949 
    35950 > select add #2.136
    35951 
    35952 6 models selected 
    35953 
    35954 > select subtract #2.136
    35955 
    35956 5 models selected 
    35957 
    35958 > select add #2.238
    35959 
    35960 6 models selected 
    35961 
    35962 > select add #2.239
    35963 
    35964 7 models selected 
    35965 Grouped 7 regions 
    35966 
    35967 > select #2.136
    35968 
    35969 1 model selected 
    35970 Ungrouped to 5 regions 
    35971 
    35972 > select #2.77
    35973 
    35974 1 model selected 
    35975 
    35976 > select add #2.1
    35977 
    35978 2 models selected 
    35979 Grouped 2 regions 
    35980 
    35981 > select #2.25
    35982 
    35983 1 model selected 
    35984 
    35985 > select #2.11
    35986 
    35987 1 model selected 
    35988 Ungrouped to 2 regions 
    35989 Ungrouped to 6 regions 
    35990 Ungrouped to 21 regions 
    35991 
    35992 > select #2.250
    35993 
    35994 1 model selected 
    35995 
    35996 > select add #2.246
    35997 
    35998 2 models selected 
    35999 
    36000 > select add #2.248
    36001 
    36002 3 models selected 
    36003 
    36004 > select add #2.254
    36005 
    36006 4 models selected 
    36007 
    36008 > select add #2.245
    36009 
    36010 5 models selected 
    36011 Grouped 5 regions 
    36012 
    36013 > select add #2.244
    36014 
    36015 2 models selected 
    36016 Grouped 2 regions 
    36017 
    36018 > select add #2.253
    36019 
    36020 2 models selected 
    36021 Grouped 2 regions 
    36022 
    36023 > select clear
    36024 
    36025 > select #2.11
    36026 
    36027 1 model selected 
    36028 
    36029 > select add #2.1
    36030 
    36031 2 models selected 
    36032 
    36033 > select add #2.25
    36034 
    36035 3 models selected 
    36036 
    36037 > select add #2.124
    36038 
    36039 4 models selected 
    36040 
    36041 > select subtract #2.1
    36042 
    36043 3 models selected 
    36044 
    36045 The cached device pixel ratio value was stale on window expose. Please file a
    36046 QTBUG which explains how to reproduce. 
    36047 
    36048 > select add #2.1
    36049 
    36050 4 models selected 
    36051 Grouped 4 regions 
    36052 
    36053 > select #2.213
    36054 
    36055 1 model selected 
    36056 
    36057 > select #2.31
    36058 
    36059 1 model selected 
    36060 Ungrouped to 15 regions 
    36061 
    36062 > select subtract #2.250
    36063 
    36064 14 models selected 
    36065 
    36066 > select subtract #2.263
    36067 
    36068 13 models selected 
    36069 
    36070 > select subtract #2.248
    36071 
    36072 12 models selected 
    36073 
    36074 > select subtract #2.168
    36075 
    36076 11 models selected 
    36077 
    36078 > select subtract #2.246
    36079 
    36080 10 models selected 
    36081 Grouped 10 regions 
    36082 
    36083 > select add #2.1
    36084 
    36085 2 models selected 
    36086 Grouped 2 regions 
    36087 
    36088 > select #2.231
    36089 
    36090 1 model selected 
    36091 
    36092 > select add #2.50
    36093 
    36094 2 models selected 
    36095 
    36096 > select add #2.1
    36097 
    36098 3 models selected 
    36099 Grouped 3 regions 
    36100 
    36101 > select #2.159
    36102 
    36103 1 model selected 
    36104 Ungrouped to 2 regions 
    36105 Ungrouped to 4 regions 
    36106 Ungrouped to 13 regions 
    36107 
    36108 > select #2.231
    36109 
    36110 1 model selected 
    36111 
    36112 > select add #2.244
    36113 
    36114 2 models selected 
    36115 
    36116 > select add #2.245
    36117 
    36118 3 models selected 
    36119 
    36120 > select add #2.238
    36121 
    36122 4 models selected 
    36123 
    36124 > select add #2.25
    36125 
    36126 5 models selected 
    36127 
    36128 > select add #2.11
    36129 
    36130 6 models selected 
    36131 Grouped 6 regions 
    36132 
    36133 > select add #2.1
    36134 
    36135 2 models selected 
    36136 Grouped 2 regions 
    36137 
    36138 > select clear
    36139 
    36140 > select #2.1
    36141 
    36142 1 model selected 
    36143 
    36144 > select clear
    36145 
    36146 > select #2.1
    36147 
    36148 1 model selected 
    36149 Ungrouped to 2 regions 
    36150 
    36151 > select #2.25
    36152 
    36153 1 model selected 
    36154 Ungrouped to 3 regions 
    36155 
    36156 > select #2.31
    36157 
    36158 1 model selected 
    36159 Ungrouped to 2 regions 
    36160 
    36161 > select #2.231
    36162 
    36163 1 model selected 
    36164 Ungrouped to 4 regions 
    36165 
    36166 > select #2.245
    36167 
    36168 1 model selected 
    36169 Ungrouped to 2 regions 
    36170 
    36171 > select #2.267
    36172 
    36173 1 model selected 
    36174 
    36175 > select #2.267
    36176 
    36177 1 model selected 
    36178 Ungrouped to 7 regions 
    36179 
    36180 > select #2.268
    36181 
    36182 1 model selected 
    36183 Ungrouped to 9 regions 
    36184 
    36185 > select #2.272
    36186 
    36187 1 model selected 
    36188 
    36189 > select #2.272
    36190 
    36191 1 model selected 
    36192 Ungrouped to 7 regions 
    36193 
    36194 > select #2.282
    36195 
    36196 1 model selected 
    36197 Ungrouped to 6 regions 
    36198 
    36199 > select #2.1
    36200 
    36201 1 model selected 
    36202 
    36203 > select add #2.275
    36204 
    36205 2 models selected 
    36206 
    36207 > select add #2.281
    36208 
    36209 3 models selected 
    36210 
    36211 > select add #2.276
    36212 
    36213 4 models selected 
    36214 
    36215 > select add #2.274
    36216 
    36217 5 models selected 
    36218 
    36219 > select add #2.244
    36220 
    36221 6 models selected 
    36222 
    36223 > select add #2.269
    36224 
    36225 7 models selected 
    36226 
    36227 > select add #2.271
    36228 
    36229 8 models selected 
    36230 
    36231 > select add #2.273
    36232 
    36233 9 models selected 
    36234 
    36235 > select add #2.238
    36236 
    36237 10 models selected 
    36238 Grouped 10 regions 
    36239 
    36240 > select #2.231
    36241 
    36242 1 model selected 
    36243 Ungrouped to 4 regions 
    36244 Ungrouped to 3 regions 
    36245 
    36246 > select #2.269
    36247 
    36248 1 model selected 
    36249 
    36250 > select add #2.1
    36251 
    36252 2 models selected 
    36253 
    36254 > select add #2.271
    36255 
    36256 3 models selected 
    36257 Grouped 3 regions 
    36258 
    36259 > select #2.267
    36260 
    36261 1 model selected 
    36262 
    36263 > select add #2.244
    36264 
    36265 2 models selected 
    36266 
    36267 > select add #2.274
    36268 
    36269 3 models selected 
    36270 
    36271 > select add #2.231
    36272 
    36273 4 models selected 
    36274 
    36275 > select add #2.273
    36276 
    36277 5 models selected 
    36278 
    36279 > select #2.1
    36280 
    36281 1 model selected 
    36282 
    36283 > select clear
    36284 
    36285 > select #2.1
    36286 
    36287 1 model selected 
    36288 
    36289 > select add #2.287
    36290 
    36291 2 models selected 
    36292 
    36293 > select add #2.270
    36294 
    36295 3 models selected 
    36296 
    36297 > select add #2.50
    36298 
    36299 4 models selected 
    36300 
    36301 > select add #2.11
    36302 
    36303 5 models selected 
    36304 
    36305 > select add #2.31
    36306 
    36307 6 models selected 
    36308 
    36309 > select add #2.245
    36310 
    36311 7 models selected 
    36312 Grouped 7 regions 
    36313 
    36314 > select #2.291
    36315 
    36316 1 model selected 
    36317 
    36318 > select add #2.289
    36319 
    36320 2 models selected 
    36321 
    36322 > select add #2.290
    36323 
    36324 3 models selected 
    36325 
    36326 > select #2.25
    36327 
    36328 1 model selected 
    36329 
    36330 > select add #2.1
    36331 
    36332 2 models selected 
    36333 Grouped 2 regions 
    36334 
    36335 > select clear
    36336 
    36337 > select #2.1
    36338 
    36339 1 model selected 
    36340 
    36341 > select clear
    36342 
    36343 Showing 278 region surfaces 
    36344 
    36345 > select #2.1
    36346 
    36347 1 model selected 
    36348 Opened Rev-CJFlgYPlfAB-
    36349 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #16, grid
    36350 size 200,200,200, pixel 2.14, shown at step 1, values float32 
    36351 
    36352 The cached device pixel ratio value was stale on window expose. Please file a
    36353 QTBUG which explains how to reproduce. 
    36354 
    36355 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/Cage.mrc
    36356 > models #16
    36357 
    36358 Opened Rev-CJFlgYPlfAB-
    36359 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #17, grid
    36360 size 200,200,200, pixel 2.14, shown at step 1, values float32 
    36361 Segmenting Rev-CJFlgYPlfAB-
    36362 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked, density
    36363 threshold 0.001238 
    36364 Showing 203 region surfaces 
    36365 4214 watershed regions, grouped to 203 regions 
    36366 Showing Rev-CJFlgYPlfAB-
    36367 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg - 203
    36368 regions, 203 surfaces 
    36369 
    36370 > hide #!16 models
    36371 
    36372 > hide #!17 models
    36373 
    36374 > show #!17 models
    36375 
    36376 > hide #!17 models
    36377 
    36378 > show #!16 models
    36379 
    36380 > select #2.111
    36381 
    36382 1 model selected 
    36383 
    36384 > select add #2.60
    36385 
    36386 2 models selected 
    36387 
    36388 > select add #2.152
    36389 
    36390 3 models selected 
    36391 
    36392 > select add #2.160
    36393 
    36394 4 models selected 
    36395 
    36396 > select add #2.74
    36397 
    36398 5 models selected 
    36399 Grouped 5 regions 
    36400 
    36401 > select #2.39
    36402 
    36403 1 model selected 
    36404 Ungrouped to 2 regions 
    36405 Ungrouped to 7 regions 
    36406 Ungrouped to 13 regions 
    36407 Ungrouped to 12 regions 
    36408 Ungrouped to 0 regions 
    36409 
    36410 > select #2.160
    36411 
    36412 1 model selected 
    36413 
    36414 > select add #2.60
    36415 
    36416 2 models selected 
    36417 Grouped 2 regions 
    36418 
    36419 > select #2.60
    36420 
    36421 1 model selected 
    36422 
    36423 > select #2.43
    36424 
    36425 1 model selected 
    36426 Ungrouped to 5 regions 
    36427 Ungrouped to 12 regions 
    36428 Ungrouped to 7 regions 
    36429 Ungrouped to 0 regions 
    36430 
    36431 > select #16
    36432 
    36433 2 models selected 
    36434 
    36435 > select #2.240
    36436 
    36437 1 model selected 
    36438 
    36439 > select add #2.218
    36440 
    36441 2 models selected 
    36442 
    36443 > select subtract #2.240
    36444 
    36445 1 model selected 
    36446 Grouped 1 regions 
    36447 
    36448 > select add #2.240
    36449 
    36450 2 models selected 
    36451 Grouped 2 regions 
    36452 
    36453 > select add #2.60
    36454 
    36455 2 models selected 
    36456 Grouped 2 regions 
    36457 
    36458 > select #2.119
    36459 
    36460 1 model selected 
    36461 
    36462 > select #2.34
    36463 
    36464 1 model selected 
    36465 Ungrouped to 2 regions 
    36466 Ungrouped to 4 regions 
    36467 Ungrouped to 19 regions 
    36468 Ungrouped to 6 regions 
    36469 Ungrouped to 0 regions 
    36470 
    36471 > select #2.240
    36472 
    36473 1 model selected 
    36474 
    36475 > select add #2.258
    36476 
    36477 2 models selected 
    36478 
    36479 > select add #2.119
    36480 
    36481 3 models selected 
    36482 
    36483 > select add #2.48
    36484 
    36485 4 models selected 
    36486 
    36487 > select #2.48
    36488 
    36489 1 model selected 
    36490 Ungrouped to 2 regions 
    36491 Ungrouped to 8 regions 
    36492 
    36493 > select #2.266
    36494 
    36495 1 model selected 
    36496 
    36497 > select add #2.119
    36498 
    36499 2 models selected 
    36500 
    36501 > select add #2.240
    36502 
    36503 3 models selected 
    36504 
    36505 > select add #2.258
    36506 
    36507 4 models selected 
    36508 Grouped 4 regions 
    36509 
    36510 > select add #2.60
    36511 
    36512 2 models selected 
    36513 Grouped 2 regions 
    36514 
    36515 > set bgColor black
    36516 
    36517 > select #2.60
    36518 
    36519 1 model selected 
    36520 Ungrouped to 2 regions 
    36521 Ungrouped to 6 regions 
    36522 Ungrouped to 12 regions 
    36523 Ungrouped to 13 regions 
    36524 
    36525 > select #2.284
    36526 
    36527 1 model selected 
    36528 
    36529 > select add #2.283
    36530 
    36531 2 models selected 
    36532 Ungrouped to 5 regions 
    36533 Ungrouped to 12 regions 
    36534 Ungrouped to 24 regions 
    36535 
    36536 > select #2.316
    36537 
    36538 1 model selected 
    36539 
    36540 > select add #2.313
    36541 
    36542 2 models selected 
    36543 
    36544 > select add #2.314
    36545 
    36546 3 models selected 
    36547 
    36548 > select add #2.298
    36549 
    36550 4 models selected 
    36551 
    36552 > select add #2.309
    36553 
    36554 5 models selected 
    36555 
    36556 > select add #2.315
    36557 
    36558 6 models selected 
    36559 
    36560 > select add #2.307
    36561 
    36562 7 models selected 
    36563 
    36564 > select add #2.310
    36565 
    36566 8 models selected 
    36567 
    36568 > select add #2.303
    36569 
    36570 9 models selected 
    36571 
    36572 > select add #2.302
    36573 
    36574 10 models selected 
    36575 
    36576 > select add #2.312
    36577 
    36578 11 models selected 
    36579 
    36580 > select add #2.311
    36581 
    36582 12 models selected 
    36583 
    36584 > select clear
    36585 
    36586 > select #2.278
    36587 
    36588 1 model selected 
    36589 
    36590 > select add #2.60
    36591 
    36592 2 models selected 
    36593 
    36594 > select add #2.287
    36595 
    36596 3 models selected 
    36597 
    36598 > select add #2.277
    36599 
    36600 4 models selected 
    36601 
    36602 > select add #2.317
    36603 
    36604 5 models selected 
    36605 
    36606 > select add #2.276
    36607 
    36608 6 models selected 
    36609 
    36610 > select add #2.308
    36611 
    36612 7 models selected 
    36613 
    36614 > select add #2.273
    36615 
    36616 8 models selected 
    36617 
    36618 > select add #2.285
    36619 
    36620 9 models selected 
    36621 
    36622 > select add #2.286
    36623 
    36624 10 models selected 
    36625 
    36626 > select add #2.306
    36627 
    36628 11 models selected 
    36629 
    36630 > select add #2.304
    36631 
    36632 12 models selected 
    36633 
    36634 > select add #2.301
    36635 
    36636 13 models selected 
    36637 
    36638 > select add #2.288
    36639 
    36640 14 models selected 
    36641 
    36642 > select add #2.299
    36643 
    36644 15 models selected 
    36645 
    36646 > select add #2.258
    36647 
    36648 16 models selected 
    36649 
    36650 > select add #2.246
    36651 
    36652 17 models selected 
    36653 
    36654 > select add #2.268
    36655 
    36656 18 models selected 
    36657 
    36658 > select add #2.279
    36659 
    36660 19 models selected 
    36661 
    36662 > select add #2.281
    36663 
    36664 20 models selected 
    36665 
    36666 > select add #2.270
    36667 
    36668 21 models selected 
    36669 
    36670 > select add #2.271
    36671 
    36672 22 models selected 
    36673 
    36674 > select add #2.269
    36675 
    36676 23 models selected 
    36677 
    36678 > select add #2.272
    36679 
    36680 24 models selected 
    36681 
    36682 > select add #2.119
    36683 
    36684 25 models selected 
    36685 Grouped 25 regions 
    36686 
    36687 > select #2.240
    36688 
    36689 1 model selected 
    36690 
    36691 > select add #2.60
    36692 
    36693 2 models selected 
    36694 Grouped 2 regions 
    36695 
    36696 > select #2.280
    36697 
    36698 1 model selected 
    36699 
    36700 > select add #2.300
    36701 
    36702 2 models selected 
    36703 
    36704 > select add #2.274
    36705 
    36706 3 models selected 
    36707 
    36708 > select add #2.292
    36709 
    36710 4 models selected 
    36711 
    36712 > select subtract #2.292
    36713 
    36714 3 models selected 
    36715 
    36716 > select add #2.275
    36717 
    36718 4 models selected 
    36719 Grouped 4 regions 
    36720 
    36721 > select add #2.247
    36722 
    36723 2 models selected 
    36724 Ungrouped to 4 regions 
    36725 Ungrouped to 2 regions 
    36726 
    36727 > select #2.258
    36728 
    36729 1 model selected 
    36730 
    36731 > select add #2.247
    36732 
    36733 2 models selected 
    36734 
    36735 > select add #2.246
    36736 
    36737 3 models selected 
    36738 
    36739 > select add #2.269
    36740 
    36741 4 models selected 
    36742 
    36743 > select add #2.119
    36744 
    36745 5 models selected 
    36746 
    36747 > select add #2.240
    36748 
    36749 6 models selected 
    36750 
    36751 > select add #2.60
    36752 
    36753 7 models selected 
    36754 Grouped 7 regions 
    36755 Showing 280 region surfaces 
    36756 
    36757 > select clear
    36758 
    36759 > select #16
    36760 
    36761 2 models selected 
    36762 
    36763 > select #2.49
    36764 
    36765 1 model selected 
    36766 Ungrouped to 2 regions 
    36767 Ungrouped to 10 regions 
    36768 Ungrouped to 11 regions 
    36769 
    36770 > select add #2.60
    36771 
    36772 12 models selected 
    36773 
    36774 > select #2.119
    36775 
    36776 1 model selected 
    36777 
    36778 > select add #2.274
    36779 
    36780 2 models selected 
    36781 
    36782 > select add #2.276
    36783 
    36784 3 models selected 
    36785 
    36786 > select subtract #2.276
    36787 
    36788 2 models selected 
    36789 
    36790 > select clear
    36791 
    36792 > select #2.60
    36793 
    36794 1 model selected 
    36795 
    36796 > select add #2.276
    36797 
    36798 2 models selected 
    36799 
    36800 > select add #2.277
    36801 
    36802 3 models selected 
    36803 
    36804 > select add #2.281
    36805 
    36806 4 models selected 
    36807 
    36808 > select add #2.278
    36809 
    36810 5 models selected 
    36811 
    36812 > select add #2.280
    36813 
    36814 6 models selected 
    36815 Grouped 6 regions 
    36816 
    36817 > select add #2.275
    36818 
    36819 2 models selected 
    36820 Grouped 2 regions 
    36821 
    36822 > select add #2.279
    36823 
    36824 2 models selected 
    36825 Grouped 2 regions 
    36826 
    36827 > select add #2.283
    36828 
    36829 2 models selected 
    36830 Grouped 2 regions 
    36831 Showing 289 region surfaces 
    36832 
    36833 > select clear
    36834 
    36835 > select #2.60
    36836 
    36837 1 model selected 
    36838 
    36839 > hide #!16 models
    36840 
    36841 Opened Rev-CJFlgYPlfAB-
    36842 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #18,
    36843 grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    36844 
    36845 The cached device pixel ratio value was stale on window expose. Please file a
    36846 QTBUG which explains how to reproduce. 
    36847 
    36848 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/Cage-
    36849 > connection.mrc models #18
    36850 
    36851 Opened Rev-CJFlgYPlfAB-
    36852 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #19,
    36853 grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    36854 Segmenting Rev-CJFlgYPlfAB-
    36855 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked, density
    36856 threshold 0.001238 
    36857 Showing 205 region surfaces 
    36858 4150 watershed regions, grouped to 205 regions 
    36859 Showing Rev-CJFlgYPlfAB-
    36860 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg -
    36861 205 regions, 205 surfaces 
    36862 
    36863 > hide #!19 models
    36864 
    36865 > hide #!18 models
    36866 
    36867 > select #2.16
    36868 
    36869 1 model selected 
    36870 
    36871 > select add #2.24
    36872 
    36873 2 models selected 
    36874 
    36875 > select add #2.118
    36876 
    36877 3 models selected 
    36878 
    36879 > select add #2.133
    36880 
    36881 4 models selected 
    36882 
    36883 > select add #2.109
    36884 
    36885 5 models selected 
    36886 
    36887 > select add #2.18
    36888 
    36889 6 models selected 
    36890 
    36891 > select add #2.81
    36892 
    36893 7 models selected 
    36894 
    36895 > select add #2.9
    36896 
    36897 8 models selected 
    36898 
    36899 > select add #2.54
    36900 
    36901 9 models selected 
    36902 
    36903 > select add #2.20
    36904 
    36905 10 models selected 
    36906 
    36907 > select add #2.85
    36908 
    36909 11 models selected 
    36910 
    36911 > select add #2.126
    36912 
    36913 12 models selected 
    36914 Grouped 12 regions 
    36915 
    36916 > select add #2.104
    36917 
    36918 2 models selected 
    36919 
    36920 > select add #2.35
    36921 
    36922 3 models selected 
    36923 
    36924 > select add #2.98
    36925 
    36926 4 models selected 
    36927 
    36928 > select add #2.30
    36929 
    36930 5 models selected 
    36931 
    36932 > select add #2.136
    36933 
    36934 6 models selected 
    36935 
    36936 > select add #2.31
    36937 
    36938 7 models selected 
    36939 
    36940 > select add #2.89
    36941 
    36942 8 models selected 
    36943 
    36944 > select add #2.97
    36945 
    36946 9 models selected 
    36947 
    36948 > select add #2.153
    36949 
    36950 10 models selected 
    36951 
    36952 > select add #2.96
    36953 
    36954 11 models selected 
    36955 
    36956 > select add #2.116
    36957 
    36958 12 models selected 
    36959 Grouped 12 regions 
    36960 
    36961 > select add #2.103
    36962 
    36963 2 models selected 
    36964 
    36965 > select add #2.67
    36966 
    36967 3 models selected 
    36968 
    36969 > select add #2.45
    36970 
    36971 4 models selected 
    36972 
    36973 > select add #2.26
    36974 
    36975 5 models selected 
    36976 
    36977 > select add #2.70
    36978 
    36979 6 models selected 
    36980 
    36981 > select add #2.110
    36982 
    36983 7 models selected 
    36984 
    36985 > select add #2.58
    36986 
    36987 8 models selected 
    36988 Grouped 8 regions 
    36989 
    36990 > select clear
    36991 
    36992 > select #2.9
    36993 
    36994 1 model selected 
    36995 Opened Rev-CJFlgYPlfAB-
    36996 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    36997 as #20, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    36998 
    36999 The cached device pixel ratio value was stale on window expose. Please file a
    37000 QTBUG which explains how to reproduce. 
    37001 
    37002 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/Crings.mrc
    37003 > models #20
    37004 
    37005 Opened Rev-CJFlgYPlfAB-
    37006 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    37007 as #21, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    37008 Segmenting Rev-CJFlgYPlfAB-
    37009 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    37010 density threshold 0.001238 
    37011 Showing 175 region surfaces 
    37012 3429 watershed regions, grouped to 175 regions 
    37013 Showing Rev-CJFlgYPlfAB-
    37014 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    37015 - 175 regions, 175 surfaces 
    37016 
    37017 > hide #!20 models
    37018 
    37019 > select #2.14
    37020 
    37021 1 model selected 
    37022 
    37023 > select add #2.65
    37024 
    37025 2 models selected 
    37026 
    37027 > select add #2.44
    37028 
    37029 3 models selected 
    37030 Grouped 3 regions 
    37031 
    37032 > select clear
    37033 
    37034 > select #2.14
    37035 
    37036 1 model selected 
    37037 Opened Rev-CJFlgYPlfAB-
    37038 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    37039 as #22, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    37040 
    37041 The cached device pixel ratio value was stale on window expose. Please file a
    37042 QTBUG which explains how to reproduce. 
    37043 
    37044 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/FlaA.mrc
    37045 > models #22
    37046 
    37047 Opened Rev-CJFlgYPlfAB-
    37048 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    37049 as #23, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    37050 Segmenting Rev-CJFlgYPlfAB-
    37051 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    37052 density threshold 0.001238 
    37053 Showing 172 region surfaces 
    37054 3324 watershed regions, grouped to 172 regions 
    37055 Showing Rev-CJFlgYPlfAB-
    37056 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    37057 - 172 regions, 172 surfaces 
    37058 
    37059 > hide #!21 models
    37060 
    37061 > hide #!22 models
    37062 
    37063 > hide #!23 models
    37064 
    37065 > select #2.31
    37066 
    37067 1 model selected 
    37068 
    37069 > select #2.11
    37070 
    37071 1 model selected 
    37072 
    37073 > select add #2.1
    37074 
    37075 2 models selected 
    37076 
    37077 > select add #2.25
    37078 
    37079 3 models selected 
    37080 
    37081 > select add #2.107
    37082 
    37083 4 models selected 
    37084 Grouped 4 regions 
    37085 
    37086 > select add #2.21
    37087 
    37088 2 models selected 
    37089 
    37090 > select add #2.31
    37091 
    37092 3 models selected 
    37093 
    37094 > select add #2.61
    37095 
    37096 4 models selected 
    37097 Grouped 4 regions 
    37098 
    37099 > select #2.1
    37100 
    37101 1 model selected 
    37102 Ungrouped to 4 regions 
    37103 
    37104 > select subtract #2.21
    37105 
    37106 3 models selected 
    37107 Grouped 3 regions 
    37108 
    37109 > select clear
    37110 
    37111 > select #2.1
    37112 
    37113 1 model selected 
    37114 Showing 167 region surfaces 
    37115 Opened Rev-CJFlgYPlfAB-
    37116 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    37117 as #24, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    37118 
    37119 The cached device pixel ratio value was stale on window expose. Please file a
    37120 QTBUG which explains how to reproduce. 
    37121 
    37122 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/MS-ring.mrc
    37123 > models #24
    37124 
    37125 Opened Rev-CJFlgYPlfAB-
    37126 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    37127 as #25, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    37128 Segmenting Rev-CJFlgYPlfAB-
    37129 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    37130 density threshold 0.001238 
    37131 Showing 166 region surfaces 
    37132 3094 watershed regions, grouped to 166 regions 
    37133 Showing Rev-CJFlgYPlfAB-
    37134 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    37135 - 166 regions, 166 surfaces 
    37136 
    37137 > hide #!24 models
    37138 
    37139 > hide #!25 models
    37140 
    37141 > select #2.9
    37142 
    37143 1 model selected 
    37144 
    37145 > select add #2.7
    37146 
    37147 2 models selected 
    37148 
    37149 > select add #2.8
    37150 
    37151 3 models selected 
    37152 
    37153 > select add #2.91
    37154 
    37155 4 models selected 
    37156 
    37157 > select add #2.95
    37158 
    37159 5 models selected 
    37160 
    37161 > select add #2.99
    37162 
    37163 6 models selected 
    37164 
    37165 > select add #2.2
    37166 
    37167 7 models selected 
    37168 
    37169 > select add #2.18
    37170 
    37171 8 models selected 
    37172 
    37173 > select add #2.13
    37174 
    37175 9 models selected 
    37176 
    37177 > select add #2.40
    37178 
    37179 10 models selected 
    37180 
    37181 > select add #2.74
    37182 
    37183 11 models selected 
    37184 
    37185 > select add #2.78
    37186 
    37187 12 models selected 
    37188 
    37189 > select add #2.14
    37190 
    37191 13 models selected 
    37192 
    37193 > select add #2.46
    37194 
    37195 14 models selected 
    37196 
    37197 > select add #2.49
    37198 
    37199 15 models selected 
    37200 
    37201 > select add #2.20
    37202 
    37203 16 models selected 
    37204 Showing 166 region surfaces 
    37205 
    37206 > select clear
    37207 
    37208 > select #2.20
    37209 
    37210 1 model selected 
    37211 
    37212 > select clear
    37213 
    37214 Drag select of 4374, 4356, 4394, 4396, 4381, 4373, 4382, 4304, 4269, 4297,
    37215 4036, 4309, 3974, 3887, 3715 
    37216 Grouped 15 regions 
    37217 Showing 152 region surfaces 
    37218 
    37219 > select clear
    37220 
    37221 > select #2.2
    37222 
    37223 1 model selected 
    37224 Opened Rev-CJFlgYPlfAB-
    37225 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    37226 as #26, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    37227 
    37228 The cached device pixel ratio value was stale on window expose. Please file a
    37229 QTBUG which explains how to reproduce. 
    37230 
    37231 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/Stator-
    37232 > region.mrc models #26
    37233 
    37234 Opened Rev-CJFlgYPlfAB-
    37235 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    37236 as #27, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    37237 Segmenting Rev-CJFlgYPlfAB-
    37238 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    37239 density threshold 0.001238 
    37240 Showing 149 region surfaces 
    37241 2640 watershed regions, grouped to 149 regions 
    37242 Showing Rev-CJFlgYPlfAB-
    37243 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    37244 - 149 regions, 149 surfaces 
    37245 
    37246 > hide #!26 models
    37247 
    37248 > show #!26 models
    37249 
    37250 > hide #!26 models
    37251 
    37252 > select #2.51
    37253 
    37254 1 model selected 
    37255 
    37256 > select add #2.62
    37257 
    37258 2 models selected 
    37259 
    37260 > select add #2.16
    37261 
    37262 3 models selected 
    37263 
    37264 > select add #2.26
    37265 
    37266 4 models selected 
    37267 
    37268 > select add #2.76
    37269 
    37270 5 models selected 
    37271 
    37272 > select add #2.68
    37273 
    37274 6 models selected 
    37275 
    37276 > select add #2.38
    37277 
    37278 7 models selected 
    37279 
    37280 > select add #2.39
    37281 
    37282 8 models selected 
    37283 
    37284 > select add #2.3
    37285 
    37286 9 models selected 
    37287 
    37288 > select add #2.59
    37289 
    37290 10 models selected 
    37291 
    37292 > select add #2.4
    37293 
    37294 11 models selected 
    37295 
    37296 > select add #2.5
    37297 
    37298 12 models selected 
    37299 
    37300 > select add #2.69
    37301 
    37302 13 models selected 
    37303 
    37304 > select add #2.120
    37305 
    37306 14 models selected 
    37307 
    37308 > select add #2.42
    37309 
    37310 15 models selected 
    37311 Grouped 15 regions 
    37312 
    37313 > select add #2.21
    37314 
    37315 2 models selected 
    37316 
    37317 > select add #2.107
    37318 
    37319 3 models selected 
    37320 
    37321 > select add #2.66
    37322 
    37323 4 models selected 
    37324 
    37325 > select add #2.15
    37326 
    37327 5 models selected 
    37328 
    37329 > select add #2.89
    37330 
    37331 6 models selected 
    37332 
    37333 > select add #2.93
    37334 
    37335 7 models selected 
    37336 
    37337 > select add #2.71
    37338 
    37339 8 models selected 
    37340 
    37341 > select add #2.46
    37342 
    37343 9 models selected 
    37344 Grouped 9 regions 
    37345 
    37346 > select add #2.63
    37347 
    37348 2 models selected 
    37349 
    37350 > select add #2.121
    37351 
    37352 3 models selected 
    37353 
    37354 > select add #2.41
    37355 
    37356 4 models selected 
    37357 
    37358 > select subtract #2.41
    37359 
    37360 3 models selected 
    37361 
    37362 > select add #2.41
    37363 
    37364 4 models selected 
    37365 
    37366 > select add #2.104
    37367 
    37368 5 models selected 
    37369 
    37370 > select add #2.119
    37371 
    37372 6 models selected 
    37373 
    37374 > select add #2.96
    37375 
    37376 7 models selected 
    37377 
    37378 > select add #2.101
    37379 
    37380 8 models selected 
    37381 Grouped 8 regions 
    37382 
    37383 > select add #2.1
    37384 
    37385 2 models selected 
    37386 Grouped 2 regions 
    37387 
    37388 > select add #2.122
    37389 
    37390 2 models selected 
    37391 
    37392 > select add #2.125
    37393 
    37394 3 models selected 
    37395 
    37396 > select add #2.98
    37397 
    37398 4 models selected 
    37399 
    37400 > select add #2.81
    37401 
    37402 5 models selected 
    37403 
    37404 > select add #2.114
    37405 
    37406 6 models selected 
    37407 
    37408 > select add #2.72
    37409 
    37410 7 models selected 
    37411 
    37412 > select add #2.54
    37413 
    37414 8 models selected 
    37415 
    37416 > select add #2.74
    37417 
    37418 9 models selected 
    37419 
    37420 > select add #2.67
    37421 
    37422 10 models selected 
    37423 
    37424 > select add #2.123
    37425 
    37426 11 models selected 
    37427 
    37428 > select add #2.88
    37429 
    37430 12 models selected 
    37431 
    37432 > select add #2.113
    37433 
    37434 13 models selected 
    37435 
    37436 > select add #2.61
    37437 
    37438 14 models selected 
    37439 
    37440 > select add #2.100
    37441 
    37442 15 models selected 
    37443 
    37444 > select add #2.85
    37445 
    37446 16 models selected 
    37447 
    37448 > select add #2.86
    37449 
    37450 17 models selected 
    37451 
    37452 > select add #2.12
    37453 
    37454 18 models selected 
    37455 
    37456 > select add #2.99
    37457 
    37458 19 models selected 
    37459 
    37460 > select add #2.57
    37461 
    37462 20 models selected 
    37463 
    37464 > select add #2.50
    37465 
    37466 21 models selected 
    37467 
    37468 > select add #2.58
    37469 
    37470 22 models selected 
    37471 
    37472 > select add #2.106
    37473 
    37474 23 models selected 
    37475 
    37476 > select add #2.111
    37477 
    37478 24 models selected 
    37479 
    37480 > select add #2.108
    37481 
    37482 25 models selected 
    37483 
    37484 > select add #2.45
    37485 
    37486 26 models selected 
    37487 
    37488 > select add #2.112
    37489 
    37490 27 models selected 
    37491 
    37492 > select add #2.60
    37493 
    37494 28 models selected 
    37495 
    37496 > select add #2.10
    37497 
    37498 29 models selected 
    37499 
    37500 > select subtract #2.10
    37501 
    37502 28 models selected 
    37503 Grouped 28 regions 
    37504 
    37505 > select #2.1
    37506 
    37507 1 model selected 
    37508 
    37509 > hide #!27 models
    37510 
    37511 > select clear
    37512 
    37513 > select #2.2
    37514 
    37515 1 model selected 
    37516 
    37517 > select add #2.23
    37518 
    37519 2 models selected 
    37520 
    37521 > select add #2.34
    37522 
    37523 3 models selected 
    37524 
    37525 > select add #2.35
    37526 
    37527 4 models selected 
    37528 
    37529 > select add #2.40
    37530 
    37531 5 models selected 
    37532 
    37533 > select add #2.36
    37534 
    37535 6 models selected 
    37536 
    37537 > select add #2.22
    37538 
    37539 7 models selected 
    37540 
    37541 > select add #2.43
    37542 
    37543 8 models selected 
    37544 
    37545 > select add #2.37
    37546 
    37547 9 models selected 
    37548 
    37549 > select add #2.27
    37550 
    37551 10 models selected 
    37552 
    37553 > select add #2.65
    37554 
    37555 11 models selected 
    37556 
    37557 > select add #2.79
    37558 
    37559 12 models selected 
    37560 
    37561 > select add #2.52
    37562 
    37563 13 models selected 
    37564 
    37565 > select add #2.29
    37566 
    37567 14 models selected 
    37568 
    37569 > select add #2.18
    37570 
    37571 15 models selected 
    37572 
    37573 > select add #2.33
    37574 
    37575 16 models selected 
    37576 
    37577 > select add #2.53
    37578 
    37579 17 models selected 
    37580 
    37581 > select add #2.64
    37582 
    37583 18 models selected 
    37584 
    37585 > select add #2.92
    37586 
    37587 19 models selected 
    37588 
    37589 > select add #2.32
    37590 
    37591 20 models selected 
    37592 
    37593 > select add #2.95
    37594 
    37595 21 models selected 
    37596 
    37597 > select add #2.19
    37598 
    37599 22 models selected 
    37600 
    37601 > select add #2.94
    37602 
    37603 23 models selected 
    37604 
    37605 > select add #2.17
    37606 
    37607 24 models selected 
    37608 
    37609 > select add #2.117
    37610 
    37611 25 models selected 
    37612 
    37613 > select add #2.87
    37614 
    37615 26 models selected 
    37616 
    37617 > select add #2.30
    37618 
    37619 27 models selected 
    37620 
    37621 > select add #2.73
    37622 
    37623 28 models selected 
    37624 
    37625 > select add #2.14
    37626 
    37627 29 models selected 
    37628 
    37629 > select add #2.48
    37630 
    37631 30 models selected 
    37632 
    37633 > select add #2.9
    37634 
    37635 31 models selected 
    37636 
    37637 > select add #2.109
    37638 
    37639 32 models selected 
    37640 
    37641 > select add #2.56
    37642 
    37643 33 models selected 
    37644 
    37645 > select add #2.78
    37646 
    37647 34 models selected 
    37648 
    37649 > select add #2.11
    37650 
    37651 35 models selected 
    37652 
    37653 > select add #2.31
    37654 
    37655 36 models selected 
    37656 
    37657 > select add #2.10
    37658 
    37659 37 models selected 
    37660 
    37661 > select add #2.47
    37662 
    37663 38 models selected 
    37664 
    37665 > select add #2.97
    37666 
    37667 39 models selected 
    37668 
    37669 > select add #2.7
    37670 
    37671 40 models selected 
    37672 
    37673 > select add #2.126
    37674 
    37675 41 models selected 
    37676 
    37677 > select add #2.6
    37678 
    37679 42 models selected 
    37680 
    37681 > select add #2.84
    37682 
    37683 43 models selected 
    37684 
    37685 > select add #2.83
    37686 
    37687 44 models selected 
    37688 
    37689 > select add #2.24
    37690 
    37691 45 models selected 
    37692 
    37693 > select add #2.49
    37694 
    37695 46 models selected 
    37696 
    37697 > select add #2.55
    37698 
    37699 47 models selected 
    37700 Grouped 47 regions 
    37701 
    37702 > select #2.1
    37703 
    37704 1 model selected 
    37705 
    37706 > select add #2.8
    37707 
    37708 2 models selected 
    37709 
    37710 > select add #2.70
    37711 
    37712 3 models selected 
    37713 
    37714 > select add #2.77
    37715 
    37716 4 models selected 
    37717 
    37718 > select add #2.91
    37719 
    37720 5 models selected 
    37721 
    37722 > select add #2.103
    37723 
    37724 6 models selected 
    37725 
    37726 > select add #2.80
    37727 
    37728 7 models selected 
    37729 
    37730 > select add #2.105
    37731 
    37732 8 models selected 
    37733 
    37734 > select add #2.102
    37735 
    37736 9 models selected 
    37737 
    37738 > select add #2.28
    37739 
    37740 10 models selected 
    37741 Grouped 10 regions 
    37742 
    37743 > select add #2.116
    37744 
    37745 2 models selected 
    37746 
    37747 > select add #2.129
    37748 
    37749 3 models selected 
    37750 
    37751 > select add #2.75
    37752 
    37753 4 models selected 
    37754 
    37755 > select add #2.90
    37756 
    37757 5 models selected 
    37758 Grouped 5 regions 
    37759 
    37760 > select add #2.118
    37761 
    37762 2 models selected 
    37763 
    37764 > select add #2.141
    37765 
    37766 3 models selected 
    37767 Grouped 3 regions 
    37768 
    37769 > select add #2.135
    37770 
    37771 2 models selected 
    37772 Grouped 2 regions 
    37773 Showing 30 region surfaces 
    37774 
    37775 > select add #2.115
    37776 
    37777 2 models selected 
    37778 Grouped 2 regions 
    37779 
    37780 > select clear
    37781 
    37782 > select #2.110
    37783 
    37784 1 model selected 
    37785 
    37786 > select add #2.132
    37787 
    37788 2 models selected 
    37789 
    37790 > select add #2.131
    37791 
    37792 3 models selected 
    37793 
    37794 > select add #2.1
    37795 
    37796 4 models selected 
    37797 Grouped 4 regions 
    37798 Grouped 1 regions 
    37799 
    37800 > select #2.44
    37801 
    37802 1 model selected 
    37803 Ungrouped to 2 regions 
    37804 Ungrouped to 11 regions 
    37805 
    37806 > select #2.7
    37807 
    37808 1 model selected 
    37809 
    37810 > select add #2.16
    37811 
    37812 2 models selected 
    37813 Drag select of 3729, 267 of 22140 triangles, 3088, 105 of 3812 triangles, 435,
    37814 17 of 1940 triangles, 2986, 78 of 3528 triangles, 2979, 126 of 4372 triangles 
    37815 
    37816 > select subtract #2.13
    37817 
    37818 4 models selected 
    37819 Grouped 4 regions 
    37820 
    37821 > select add #2.12
    37822 
    37823 2 models selected 
    37824 Grouped 2 regions 
    37825 
    37826 > select add #2.10
    37827 
    37828 2 models selected 
    37829 
    37830 > select add #2.5
    37831 
    37832 3 models selected 
    37833 Grouped 3 regions 
    37834 
    37835 > select add #2.1
    37836 
    37837 2 models selected 
    37838 Grouped 2 regions 
    37839 
    37840 > select clear
    37841 
    37842 > select #2.1
    37843 
    37844 1 model selected 
    37845 Opened Rev-CJFlgYPlfAB-
    37846 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    37847 as #28, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    37848 
    37849 The cached device pixel ratio value was stale on window expose. Please file a
    37850 QTBUG which explains how to reproduce. 
    37851 
    37852 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/IM.mrc
    37853 > models #28
    37854 
    37855 Opened Rev-CJFlgYPlfAB-
    37856 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    37857 as #29, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    37858 Segmenting Rev-CJFlgYPlfAB-
    37859 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    37860 density threshold 0.001238 
    37861 Showing 71 region surfaces 
    37862 1231 watershed regions, grouped to 71 regions 
    37863 Showing Rev-CJFlgYPlfAB-
    37864 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    37865 - 71 regions, 71 surfaces 
    37866 
    37867 > hide #!28 models
    37868 
    37869 > hide #!29 models
    37870 
    37871 > select #2.9
    37872 
    37873 1 model selected 
    37874 
    37875 > select #2.30
    37876 
    37877 1 model selected 
    37878 
    37879 > select add #2.35
    37880 
    37881 2 models selected 
    37882 Grouped 2 regions 
    37883 
    37884 > select #2.9
    37885 
    37886 1 model selected 
    37887 Ungrouped to 2 regions 
    37888 Ungrouped to 6 regions 
    37889 Ungrouped to 14 regions 
    37890 
    37891 > select #2.79
    37892 
    37893 1 model selected 
    37894 Ungrouped to 5 regions 
    37895 Ungrouped to 0 regions 
    37896 
    37897 > select #2.80
    37898 
    37899 1 model selected 
    37900 
    37901 > select add #2.30
    37902 
    37903 2 models selected 
    37904 
    37905 > select add #2.77
    37906 
    37907 3 models selected 
    37908 
    37909 > select add #2.78
    37910 
    37911 4 models selected 
    37912 
    37913 > select add #2.8
    37914 
    37915 5 models selected 
    37916 Grouped 5 regions 
    37917 
    37918 > select #2.38
    37919 
    37920 1 model selected 
    37921 Ungrouped to 3 regions 
    37922 Ungrouped to 4 regions 
    37923 Ungrouped to 8 regions 
    37924 Ungrouped to 0 regions 
    37925 
    37926 > select #2.8
    37927 
    37928 1 model selected 
    37929 
    37930 > select add #2.30
    37931 
    37932 2 models selected 
    37933 
    37934 > select add #2.97
    37935 
    37936 3 models selected 
    37937 
    37938 > select #2.44
    37939 
    37940 1 model selected 
    37941 
    37942 > select add #2.4
    37943 
    37944 2 models selected 
    37945 
    37946 > select add #2.6
    37947 
    37948 3 models selected 
    37949 
    37950 > select #2.6
    37951 
    37952 1 model selected 
    37953 
    37954 > select #2.6
    37955 
    37956 1 model selected 
    37957 Ungrouped to 4 regions 
    37958 Ungrouped to 9 regions 
    37959 
    37960 > select #2.102
    37961 
    37962 1 model selected 
    37963 Ungrouped to 6 regions 
    37964 
    37965 > select #2.107
    37966 
    37967 1 model selected 
    37968 Ungrouped to 4 regions 
    37969 Ungrouped to 0 regions 
    37970 Ungrouped to 43 regions 
    37971 
    37972 > select #2.3
    37973 
    37974 1 model selected 
    37975 Ungrouped to 6 regions 
    37976 Ungrouped to 19 regions 
    37977 [Repeated 1 time(s)]Ungrouped to 0 regions 
    37978 
    37979 > select #2.173
    37980 
    37981 1 model selected 
    37982 
    37983 > select add #2.29
    37984 
    37985 2 models selected 
    37986 
    37987 > select #2.8
    37988 
    37989 1 model selected 
    37990 
    37991 > select add #2.30
    37992 
    37993 2 models selected 
    37994 
    37995 > select add #2.97
    37996 
    37997 3 models selected 
    37998 
    37999 > select subtract #2.92
    38000 
    38001 162 models selected 
    38002 
    38003 > select subtract #2.78
    38004 
    38005 161 models selected 
    38006 
    38007 > select #2.8
    38008 
    38009 1 model selected 
    38010 Ungrouped to 5 regions 
    38011 Ungrouped to 14 regions 
    38012 
    38013 > select #2.178
    38014 
    38015 1 model selected 
    38016 Ungrouped to 6 regions 
    38017 
    38018 > select #2.18
    38019 
    38020 1 model selected 
    38021 
    38022 > select add #2.49
    38023 
    38024 2 models selected 
    38025 Ungrouped to 8 regions 
    38026 
    38027 > select #2.187
    38028 
    38029 1 model selected 
    38030 
    38031 > select add #2.192
    38032 
    38033 2 models selected 
    38034 
    38035 > select add #2.50
    38036 
    38037 3 models selected 
    38038 
    38039 > select #2.50
    38040 
    38041 1 model selected 
    38042 
    38043 > select clear
    38044 
    38045 > select #2.50
    38046 
    38047 1 model selected 
    38048 Ungrouped to 7 regions 
    38049 
    38050 > select subtract #2.49
    38051 
    38052 6 models selected 
    38053 
    38054 > select subtract #2.195
    38055 
    38056 5 models selected 
    38057 
    38058 > select clear
    38059 
    38060 > select #2.49
    38061 
    38062 1 model selected 
    38063 
    38064 > select add #2.195
    38065 
    38066 2 models selected 
    38067 
    38068 > select add #2.175
    38069 
    38070 3 models selected 
    38071 
    38072 > select #2.175
    38073 
    38074 1 model selected 
    38075 Ungrouped to 2 regions 
    38076 
    38077 > select clear
    38078 
    38079 > select #2.199
    38080 
    38081 1 model selected 
    38082 
    38083 > select #2.155
    38084 
    38085 1 model selected 
    38086 
    38087 > select #2.156
    38088 
    38089 1 model selected 
    38090 Ungrouped to 9 regions 
    38091 
    38092 > select #2.205
    38093 
    38094 1 model selected 
    38095 
    38096 > select add #2.206
    38097 
    38098 2 models selected 
    38099 
    38100 > select add #2.200
    38101 
    38102 3 models selected 
    38103 
    38104 > select add #2.207
    38105 
    38106 4 models selected 
    38107 
    38108 > select add #2.198
    38109 
    38110 5 models selected 
    38111 
    38112 > select add #2.18
    38113 
    38114 6 models selected 
    38115 
    38116 > select add #2.190
    38117 
    38118 7 models selected 
    38119 
    38120 > select add #2.203
    38121 
    38122 8 models selected 
    38123 
    38124 > select add #2.175
    38125 
    38126 9 models selected 
    38127 
    38128 > select add #2.191
    38129 
    38130 10 models selected 
    38131 
    38132 > select clear
    38133 
    38134 > select #2.191
    38135 
    38136 1 model selected 
    38137 
    38138 > select #2.193
    38139 
    38140 1 model selected 
    38141 
    38142 > select #2.194
    38143 
    38144 1 model selected 
    38145 Ungrouped to 0 regions 
    38146 
    38147 > select #2.194
    38148 
    38149 1 model selected 
    38150 Ungrouped to 0 regions 
    38151 
    38152 > select #2.186
    38153 
    38154 1 model selected 
    38155 
    38156 > select #2.8
    38157 
    38158 1 model selected 
    38159 Ungrouped to 10 regions 
    38160 
    38161 > select #2.215
    38162 
    38163 1 model selected 
    38164 
    38165 > select #2.185
    38166 
    38167 1 model selected 
    38168 Ungrouped to 3 regions 
    38169 
    38170 > select #2.8
    38171 
    38172 1 model selected 
    38173 
    38174 > select #2.201
    38175 
    38176 1 model selected 
    38177 Ungrouped to 4 regions 
    38178 
    38179 > select #2.185
    38180 
    38181 1 model selected 
    38182 
    38183 > select add #2.221
    38184 
    38185 2 models selected 
    38186 
    38187 > select clear
    38188 
    38189 > select #2.209
    38190 
    38191 1 model selected 
    38192 
    38193 > select add #2.213
    38194 
    38195 2 models selected 
    38196 
    38197 > select #2.220
    38198 
    38199 1 model selected 
    38200 Ungrouped to 0 regions 
    38201 
    38202 > select #2.97
    38203 
    38204 1 model selected 
    38205 Ungrouped to 0 regions 
    38206 Drag select of 207, 276, 355, 226, 231, 1499, 227, 315, 91, 121, 120, 109,
    38207 209, 1481, 151, 150, 246, 100, 1277, 1420, 90, 425, 504, 282, 358, 230, 4550
    38208 of 4628 triangles, 193, 178, 277, 3758 of 3760 triangles, 1409, 131, 225, 390,
    38209 340 
    38210 Grouped 34 regions 
    38211 Showing 187 region surfaces 
    38212 
    38213 > select clear
    38214 
    38215 > select #2.13
    38216 
    38217 1 model selected 
    38218 Opened Rev-CJFlgYPlfAB-
    38219 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    38220 as #30, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    38221 
    38222 The cached device pixel ratio value was stale on window expose. Please file a
    38223 QTBUG which explains how to reproduce. 
    38224 
    38225 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/1xFliL.mrc
    38226 > models #30
    38227 
    38228 > hide #!30 models
    38229 
    38230 > select #2.95
    38231 
    38232 1 model selected 
    38233 
    38234 > select add #2.13
    38235 
    38236 2 models selected 
    38237 Grouped 2 regions 
    38238 Opened Rev-CJFlgYPlfAB-
    38239 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    38240 as #31, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    38241 
    38242 The cached device pixel ratio value was stale on window expose. Please file a
    38243 QTBUG which explains how to reproduce. 
    38244 
    38245 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/1xFliL.mrc
    38246 > models #31
    38247 
    38248 > select clear
    38249 
    38250 > select #2.150
    38251 
    38252 1 model selected 
    38253 
    38254 > select add #2.149
    38255 
    38256 2 models selected 
    38257 
    38258 > select add #2.79
    38259 
    38260 3 models selected 
    38261 
    38262 > select add #2.80
    38263 
    38264 4 models selected 
    38265 
    38266 > select add #2.108
    38267 
    38268 5 models selected 
    38269 
    38270 > select add #2.179
    38271 
    38272 6 models selected 
    38273 
    38274 > select add #2.44
    38275 
    38276 7 models selected 
    38277 
    38278 > select add #2.123
    38279 
    38280 8 models selected 
    38281 
    38282 > select add #2.5
    38283 
    38284 9 models selected 
    38285 
    38286 > select add #2.4
    38287 
    38288 10 models selected 
    38289 
    38290 > select add #2.99
    38291 
    38292 11 models selected 
    38293 
    38294 > select add #2.29
    38295 
    38296 12 models selected 
    38297 
    38298 > select add #2.2
    38299 
    38300 13 models selected 
    38301 
    38302 > select subtract #2.4
    38303 
    38304 12 models selected 
    38305 
    38306 > select add #2.173
    38307 
    38308 13 models selected 
    38309 
    38310 > select add #2.174
    38311 
    38312 14 models selected 
    38313 Drag select of 1595, 27 of 6488 triangles, 170, 24 of 2304 triangles, 255, 31
    38314 of 1496 triangles 
    38315 
    38316 > select #2.5
    38317 
    38318 1 model selected 
    38319 
    38320 > select add #2.4
    38321 
    38322 2 models selected 
    38323 
    38324 > select add #2.173
    38325 
    38326 3 models selected 
    38327 
    38328 > select add #2.2
    38329 
    38330 4 models selected 
    38331 
    38332 > select add #2.174
    38333 
    38334 5 models selected 
    38335 
    38336 > select add #2.29
    38337 
    38338 6 models selected 
    38339 
    38340 > select add #2.99
    38341 
    38342 7 models selected 
    38343 
    38344 > select subtract #2.99
    38345 
    38346 6 models selected 
    38347 
    38348 > select add #2.99
    38349 
    38350 7 models selected 
    38351 
    38352 > select add #2.149
    38353 
    38354 8 models selected 
    38355 
    38356 > select add #2.150
    38357 
    38358 9 models selected 
    38359 
    38360 > select add #2.79
    38361 
    38362 10 models selected 
    38363 
    38364 > select add #2.108
    38365 
    38366 11 models selected 
    38367 
    38368 > select add #2.80
    38369 
    38370 12 models selected 
    38371 
    38372 > select add #2.179
    38373 
    38374 13 models selected 
    38375 
    38376 > select add #2.44
    38377 
    38378 14 models selected 
    38379 
    38380 > select add #2.25
    38381 
    38382 15 models selected 
    38383 
    38384 > select add #2.169
    38385 
    38386 16 models selected 
    38387 
    38388 > select add #2.170
    38389 
    38390 17 models selected 
    38391 
    38392 > select add #2.22
    38393 
    38394 18 models selected 
    38395 
    38396 > select add #2.167
    38397 
    38398 19 models selected 
    38399 
    38400 > select add #2.168
    38401 
    38402 20 models selected 
    38403 
    38404 > select add #2.13
    38405 
    38406 21 models selected 
    38407 
    38408 > hide #!31 models
    38409 
    38410 > select clear
    38411 
    38412 > select #2.44
    38413 
    38414 1 model selected 
    38415 Ungrouped to 6 regions 
    38416 
    38417 > select #2.30
    38418 
    38419 1 model selected 
    38420 
    38421 > select add #2.50
    38422 
    38423 2 models selected 
    38424 
    38425 > select add #2.53
    38426 
    38427 3 models selected 
    38428 
    38429 > select clear
    38430 
    38431 > select #2.78
    38432 
    38433 1 model selected 
    38434 Ungrouped to 0 regions 
    38435 
    38436 > select #2.19
    38437 
    38438 1 model selected 
    38439 Ungrouped to 2 regions 
    38440 Ungrouped to 0 regions 
    38441 
    38442 > select #2.150
    38443 
    38444 1 model selected 
    38445 Ungrouped to 5 regions 
    38446 Ungrouped to 24 regions 
    38447 Ungrouped to 23 regions 
    38448 
    38449 > select #2.226
    38450 
    38451 1 model selected 
    38452 
    38453 > select add #2.228
    38454 
    38455 2 models selected 
    38456 
    38457 > select add #2.211
    38458 
    38459 3 models selected 
    38460 
    38461 > select add #2.237
    38462 
    38463 4 models selected 
    38464 
    38465 > select add #2.236
    38466 
    38467 5 models selected 
    38468 
    38469 > select add #2.214
    38470 
    38471 6 models selected 
    38472 
    38473 > select add #2.235
    38474 
    38475 7 models selected 
    38476 
    38477 > select add #2.156
    38478 
    38479 8 models selected 
    38480 
    38481 > select add #2.179
    38482 
    38483 9 models selected 
    38484 
    38485 > select subtract #2.179
    38486 
    38487 8 models selected 
    38488 
    38489 > select add #2.19
    38490 
    38491 9 models selected 
    38492 
    38493 > select add #2.197
    38494 
    38495 10 models selected 
    38496 
    38497 > select #2.179
    38498 
    38499 1 model selected 
    38500 Ungrouped to 6 regions 
    38501 
    38502 > select #2.182
    38503 
    38504 1 model selected 
    38505 
    38506 > select add #2.183
    38507 
    38508 2 models selected 
    38509 
    38510 > select add #2.97
    38511 
    38512 3 models selected 
    38513 
    38514 > select add #2.216
    38515 
    38516 4 models selected 
    38517 
    38518 > select add #2.212
    38519 
    38520 5 models selected 
    38521 
    38522 > select #2.108
    38523 
    38524 1 model selected 
    38525 Ungrouped to 0 regions 
    38526 
    38527 > select #2.108
    38528 
    38529 1 model selected 
    38530 
    38531 > select #2.201
    38532 
    38533 1 model selected 
    38534 
    38535 > select #2.202
    38536 
    38537 1 model selected 
    38538 Ungrouped to 8 regions 
    38539 
    38540 > select #2.244
    38541 
    38542 1 model selected 
    38543 
    38544 > select subtract #2.244
    38545 
    38546 Nothing selected 
    38547 
    38548 > select add #2.244
    38549 
    38550 1 model selected 
    38551 
    38552 > select add #2.149
    38553 
    38554 2 models selected 
    38555 
    38556 > select subtract #2.149
    38557 
    38558 1 model selected 
    38559 
    38560 > select add #2.149
    38561 
    38562 2 models selected 
    38563 
    38564 > select #2.181
    38565 
    38566 1 model selected 
    38567 Ungrouped to 0 regions 
    38568 
    38569 > select add #2.218
    38570 
    38571 1 model selected 
    38572 
    38573 > select add #2.78
    38574 
    38575 2 models selected 
    38576 
    38577 > select #2.99
    38578 
    38579 1 model selected 
    38580 Ungrouped to 8 regions 
    38581 
    38582 > select #2.248
    38583 
    38584 1 model selected 
    38585 
    38586 > select add #2.246
    38587 
    38588 2 models selected 
    38589 
    38590 > select add #2.251
    38591 
    38592 3 models selected 
    38593 
    38594 > select add #2.245
    38595 
    38596 4 models selected 
    38597 
    38598 > select add #2.202
    38599 
    38600 5 models selected 
    38601 
    38602 > select clear
    38603 
    38604 > select #2.247
    38605 
    38606 1 model selected 
    38607 
    38608 > select #2.202
    38609 
    38610 1 model selected 
    38611 Ungrouped to 3 regions 
    38612 Ungrouped to 0 regions 
    38613 
    38614 > select #2.29
    38615 
    38616 1 model selected 
    38617 Ungrouped to 4 regions 
    38618 Ungrouped to 23 regions 
    38619 
    38620 > select clear
    38621 
    38622 > select #2.277
    38623 
    38624 1 model selected 
    38625 
    38626 > select add #2.274
    38627 
    38628 2 models selected 
    38629 
    38630 > select add #2.278
    38631 
    38632 3 models selected 
    38633 
    38634 > select add #2.275
    38635 
    38636 4 models selected 
    38637 
    38638 > select add #2.276
    38639 
    38640 5 models selected 
    38641 
    38642 > select add #2.262
    38643 
    38644 6 models selected 
    38645 
    38646 > select #2.169
    38647 
    38648 1 model selected 
    38649 
    38650 > select add #2.170
    38651 
    38652 2 models selected 
    38653 
    38654 > select add #2.5
    38655 
    38656 3 models selected 
    38657 
    38658 > select #2.5
    38659 
    38660 1 model selected 
    38661 Ungrouped to 4 regions 
    38662 
    38663 > select #2.255
    38664 
    38665 1 model selected 
    38666 Ungrouped to 10 regions 
    38667 
    38668 > select #2.286
    38669 
    38670 1 model selected 
    38671 
    38672 > select add #2.283
    38673 
    38674 2 models selected 
    38675 
    38676 > select add #2.273
    38677 
    38678 3 models selected 
    38679 
    38680 > select add #2.272
    38681 
    38682 4 models selected 
    38683 
    38684 > select add #2.266
    38685 
    38686 5 models selected 
    38687 
    38688 > select add #2.29
    38689 
    38690 6 models selected 
    38691 
    38692 > select add #2.202
    38693 
    38694 7 models selected 
    38695 
    38696 > select add #2.257
    38697 
    38698 8 models selected 
    38699 
    38700 > select add #2.268
    38701 
    38702 9 models selected 
    38703 
    38704 > select add #2.265
    38705 
    38706 10 models selected 
    38707 
    38708 > select add #2.256
    38709 
    38710 11 models selected 
    38711 
    38712 > select #2.271
    38713 
    38714 1 model selected 
    38715 Ungrouped to 2 regions 
    38716 
    38717 > select clear
    38718 
    38719 > select #2.289
    38720 
    38721 1 model selected 
    38722 
    38723 > select #2.181
    38724 
    38725 1 model selected 
    38726 
    38727 > select clear
    38728 
    38729 > select #2.217
    38730 
    38731 1 model selected 
    38732 
    38733 > select add #2.168
    38734 
    38735 2 models selected 
    38736 
    38737 > select add #2.167
    38738 
    38739 3 models selected 
    38740 
    38741 > select #2.13
    38742 
    38743 1 model selected 
    38744 Drag select of 132, 303 of 4172 triangles, 288, 389 of 1296 triangles, 233, 5
    38745 of 3452 triangles, 329, 108 of 2248 triangles, 1599, 181 of 7828 triangles,
    38746 104, 2566 of 4364 triangles, 1246, 27 of 2812 triangles, 187, 1002 of 2892
    38747 triangles, 185, 1426, 4810 of 6384 triangles, 1433, 4864 of 11184 triangles,
    38748 308, 874 of 2308 triangles, 293, 278 of 2080 triangles 
    38749 
    38750 > select clear
    38751 
    38752 Drag select of 113, 1257, 201, 256, 170, 127, 141, 240, 1710, 180, 300, 210,
    38753 462, 317, 124, 304, 112, 132, 288, 195, 233, 252, 329, 135, 213, 287, 264,
    38754 263, 363, 302, 343, 92, 182, 289, 267, 285, 316, 362, 328, 1581, 168, 122,
    38755 211, 212, 1419, 270, 1406, 290, 346, 347, 126, 138, 136, 157, 137, 1284, 184,
    38756 199, 183, 139, 1599, 104, 1246, 187, 185, 1426, 1433, 308, 293, 217 
    38757 Grouped 70 regions 
    38758 Showing 219 region surfaces 
    38759 Opened Rev-CJFlgYPlfAB-
    38760 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    38761 as #32, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    38762 
    38763 The cached device pixel ratio value was stale on window expose. Please file a
    38764 QTBUG which explains how to reproduce. 
    38765 
    38766 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/3xFliL.mrc
    38767 > models #32
    38768 
    38769 > select clear
    38770 
    38771 > select #2.27
    38772 
    38773 1 model selected 
    38774 
    38775 > select add #2.141
    38776 
    38777 2 models selected 
    38778 
    38779 > select add #2.142
    38780 
    38781 3 models selected 
    38782 
    38783 > select add #2.114
    38784 
    38785 4 models selected 
    38786 
    38787 > select add #2.112
    38788 
    38789 5 models selected 
    38790 
    38791 > select add #2.104
    38792 
    38793 6 models selected 
    38794 
    38795 > select add #2.98
    38796 
    38797 7 models selected 
    38798 
    38799 > select add #2.6
    38800 
    38801 8 models selected 
    38802 
    38803 > select add #2.39
    38804 
    38805 9 models selected 
    38806 
    38807 > select add #2.246
    38808 
    38809 10 models selected 
    38810 
    38811 > select add #2.248
    38812 
    38813 11 models selected 
    38814 
    38815 > select add #2.20
    38816 
    38817 12 models selected 
    38818 
    38819 > select add #2.247
    38820 
    38821 13 models selected 
    38822 
    38823 > select add #2.245
    38824 
    38825 14 models selected 
    38826 
    38827 > select add #2.251
    38828 
    38829 15 models selected 
    38830 
    38831 > select add #2.105
    38832 
    38833 16 models selected 
    38834 
    38835 > select add #2.103
    38836 
    38837 17 models selected 
    38838 
    38839 > select add #2.91
    38840 
    38841 18 models selected 
    38842 
    38843 > select add #2.106
    38844 
    38845 19 models selected 
    38846 
    38847 > select add #2.109
    38848 
    38849 20 models selected 
    38850 
    38851 > select add #2.102
    38852 
    38853 21 models selected 
    38854 
    38855 > select add #2.108
    38856 
    38857 22 models selected 
    38858 Grouped 22 regions 
    38859 
    38860 > select #2.2
    38861 
    38862 1 model selected 
    38863 
    38864 > select #2.110
    38865 
    38866 1 model selected 
    38867 
    38868 > select add #2.2
    38869 
    38870 2 models selected 
    38871 Grouped 2 regions 
    38872 Showing 197 region surfaces 
    38873 
    38874 > select #2.4
    38875 
    38876 1 model selected 
    38877 
    38878 > select #2.28
    38879 
    38880 1 model selected 
    38881 
    38882 > select add #2.125
    38883 
    38884 2 models selected 
    38885 
    38886 > select add #2.126
    38887 
    38888 3 models selected 
    38889 
    38890 > select add #2.17
    38891 
    38892 4 models selected 
    38893 
    38894 > select add #2.144
    38895 
    38896 5 models selected 
    38897 
    38898 > select add #2.50
    38899 
    38900 6 models selected 
    38901 
    38902 > select add #2.86
    38903 
    38904 7 models selected 
    38905 
    38906 > select add #2.85
    38907 
    38908 8 models selected 
    38909 
    38910 > select add #2.75
    38911 
    38912 9 models selected 
    38913 
    38914 > select add #2.88
    38915 
    38916 10 models selected 
    38917 
    38918 > select add #2.46
    38919 
    38920 11 models selected 
    38921 
    38922 > select add #2.89
    38923 
    38924 12 models selected 
    38925 
    38926 > select add #2.83
    38927 
    38928 13 models selected 
    38929 
    38930 > select add #2.81
    38931 
    38932 14 models selected 
    38933 
    38934 > select add #2.82
    38935 
    38936 15 models selected 
    38937 
    38938 > select add #2.90
    38939 
    38940 16 models selected 
    38941 
    38942 > select add #2.72
    38943 
    38944 17 models selected 
    38945 
    38946 > select add #2.87
    38947 
    38948 18 models selected 
    38949 
    38950 > select add #2.51
    38951 
    38952 19 models selected 
    38953 
    38954 > select add #2.35
    38955 
    38956 20 models selected 
    38957 
    38958 > select add #2.30
    38959 
    38960 21 models selected 
    38961 
    38962 > select add #2.78
    38963 
    38964 22 models selected 
    38965 
    38966 > select add #2.53
    38967 
    38968 23 models selected 
    38969 Grouped 23 regions 
    38970 
    38971 > select add #2.4
    38972 
    38973 2 models selected 
    38974 Grouped 2 regions 
    38975 
    38976 > select #2.123
    38977 
    38978 1 model selected 
    38979 
    38980 > select add #2.120
    38981 
    38982 2 models selected 
    38983 
    38984 > select clear
    38985 
    38986 Showing 174 region surfaces 
    38987 
    38988 > select #2.120
    38989 
    38990 1 model selected 
    38991 
    38992 > select add #2.4
    38993 
    38994 2 models selected 
    38995 
    38996 > select add #2.122
    38997 
    38998 3 models selected 
    38999 
    39000 > select add #2.37
    39001 
    39002 4 models selected 
    39003 
    39004 > select add #2.40
    39005 
    39006 5 models selected 
    39007 
    39008 > select add #2.128
    39009 
    39010 6 models selected 
    39011 
    39012 > select add #2.127
    39013 
    39014 7 models selected 
    39015 
    39016 > select add #2.133
    39017 
    39018 8 models selected 
    39019 
    39020 > select add #2.96
    39021 
    39022 9 models selected 
    39023 
    39024 > select add #2.47
    39025 
    39026 10 models selected 
    39027 
    39028 > select add #2.130
    39029 
    39030 11 models selected 
    39031 
    39032 > select add #2.36
    39033 
    39034 12 models selected 
    39035 Grouped 12 regions 
    39036 
    39037 > hide #!32 models
    39038 
    39039 > select clear
    39040 
    39041 > select #2.4
    39042 
    39043 1 model selected 
    39044 
    39045 > select add #2.228
    39046 
    39047 2 models selected 
    39048 
    39049 > select add #2.139
    39050 
    39051 3 models selected 
    39052 Grouped 3 regions 
    39053 
    39054 > select clear
    39055 
    39056 > select #2.4
    39057 
    39058 1 model selected 
    39059 Opened Rev-CJFlgYPlfAB-
    39060 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    39061 as #33, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    39062 
    39063 The cached device pixel ratio value was stale on window expose. Please file a
    39064 QTBUG which explains how to reproduce. 
    39065 
    39066 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/3xPflAB.mrc
    39067 > models #33
    39068 
    39069 > select clear
    39070 
    39071 > select #2.4
    39072 
    39073 1 model selected 
    39074 
    39075 > hide #!33 models
    39076 
    39077 > select #2.93
    39078 
    39079 1 model selected 
    39080 
    39081 > select add #2.77
    39082 
    39083 2 models selected 
    39084 
    39085 > select add #2.2
    39086 
    39087 3 models selected 
    39088 
    39089 > select add #2.76
    39090 
    39091 4 models selected 
    39092 
    39093 > select add #2.74
    39094 
    39095 5 models selected 
    39096 
    39097 > select add #2.84
    39098 
    39099 6 models selected 
    39100 
    39101 > select add #2.221
    39102 
    39103 7 models selected 
    39104 
    39105 > select add #2.123
    39106 
    39107 8 models selected 
    39108 
    39109 > select add #2.201
    39110 
    39111 9 models selected 
    39112 Grouped 9 regions 
    39113 
    39114 > select clear
    39115 
    39116 > select #2.163
    39117 
    39118 1 model selected 
    39119 
    39120 > select add #2.169
    39121 
    39122 2 models selected 
    39123 
    39124 > select add #2.165
    39125 
    39126 3 models selected 
    39127 
    39128 > select add #2.166
    39129 
    39130 4 models selected 
    39131 
    39132 > select add #2.160
    39133 
    39134 5 models selected 
    39135 
    39136 > select add #2.26
    39137 
    39138 6 models selected 
    39139 
    39140 > select add #2.170
    39141 
    39142 7 models selected 
    39143 
    39144 > select add #2.32
    39145 
    39146 8 models selected 
    39147 
    39148 > select add #2.159
    39149 
    39150 9 models selected 
    39151 
    39152 > select add #2.33
    39153 
    39154 10 models selected 
    39155 
    39156 > select clear
    39157 
    39158 Showing 153 region surfaces 
    39159 
    39160 > select #2.2
    39161 
    39162 1 model selected 
    39163 Opened Rev-CJFlgYPlfAB-
    39164 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    39165 as #34, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    39166 
    39167 The cached device pixel ratio value was stale on window expose. Please file a
    39168 QTBUG which explains how to reproduce. 
    39169 
    39170 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/3xFliL.mrc
    39171 > models #34
    39172 
    39173 > select clear
    39174 
    39175 > select #2.2
    39176 
    39177 1 model selected 
    39178 
    39179 > select add #2.4
    39180 
    39181 2 models selected 
    39182 
    39183 > hide #!34 models
    39184 
    39185 Opened Rev-CJFlgYPlfAB-
    39186 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    39187 as #35, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    39188 
    39189 The cached device pixel ratio value was stale on window expose. Please file a
    39190 QTBUG which explains how to reproduce. 
    39191 
    39192 > save /Users/shoichitachiyama/Desktop/For-Chimera-
    39193 > PflAB/Resegment/Segmentations.cxs includeMaps true
    39194 
    39195 > close session
    39196 
    39197 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    39198 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    39199 > refinment/For-Chimera-PflAB/Resegment/3xPflAB.mrc"
    39200 
    39201 Opened 3xPflAB.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    39202 0.0208, step 1, values float32 
    39203 
    39204 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    39205 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    39206 > refinment/For-Chimera-PflAB/Resegment/3xFliL.mrc"
    39207 
    39208 Opened 3xFliL.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    39209 0.00115, step 1, values float32 
    39210 
    39211 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    39212 > files/C.jejuni/2nd_paper/For-2nd-manuscript/CJ_PflAB-cage_Sep2024/Model-
    39213 > from-Jack/PflAB-Cage.pdb"
    39214 
    39215 Chain information for PflAB-Cage.pdb 
    39216 --- 
    39217 Chain | Description 
    39218 3.1/A 3.2/A 3.3/A 3.4/A | No description available 
    39219 3.5/A 3.8/D 3.11/G 3.14/J 3.17/M 3.20/P 3.23/S 3.26/V | No description available 
    39220 3.1/B 3.2/B 3.3/B 3.4/B | No description available 
    39221 3.6/B 3.9/E 3.12/H 3.15/K 3.18/N 3.21/Q 3.24/T 3.27/W | No description available 
    39222 3.7/C 3.10/F 3.13/I 3.16/L 3.19/O 3.22/R 3.25/U 3.28/X | No description available 
    39223 3.29/Y 3.30/Z 3.31/a 3.32/b 3.33/c | No description available 
    39224  
    39225 
    39226 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    39227 > files/C.jejuni/2nd_paper/For-2nd-manuscript/CJ_PflAB-cage_Sep2024/Model-
    39228 > from-Jack/Multimer-CJ-unit.pdb"
    39229 
    39230 Chain information for Multimer-CJ-unit.pdb 
    39231 --- 
    39232 Chain | Description 
    39233 4.27/? 4.50/? 4.73/? 4.96/? | No description available 
    39234 4.38/? 4.39/? 4.40/? 4.41/? 4.42/? 4.43/? 4.44/? 4.45/? 4.46/? 4.47/? 4.61/? 4.62/? 4.63/? 4.64/? 4.65/? 4.66/? 4.67/? 4.68/? 4.69/? 4.70/? 4.84/? 4.85/? 4.86/? 4.87/? 4.88/? 4.89/? 4.90/? 4.91/? 4.92/? 4.93/? 4.107/? 4.108/? 4.109/? 4.110/? 4.111/? 4.112/? 4.113/? 4.114/? 4.115/? 4.116/? | No description available 
    39235 4.1/A 4.2/A 4.3/A 4.4/A 4.5/A 4.6/A 4.7/A 4.8/A | No description available 
    39236 4.9/A 4.10/A 4.11/A 4.12/A 4.13/A | No description available 
    39237 4.14/A 4.15/A 4.16/A 4.17/A 4.18/A | No description available 
    39238 4.25/A 4.26/A 4.48/A 4.49/A 4.71/A 4.72/A 4.94/A 4.95/A | No description available 
    39239 4.117/A 4.118/A 4.119/A 4.120/A 4.121/A 4.122/A 4.117/B 4.118/B 4.119/B 4.120/B 4.121/B 4.122/B | No description available 
    39240 4.1/B 4.2/B 4.3/B 4.4/B 4.5/B 4.6/B 4.7/B 4.8/B | No description available 
    39241 4.14/B 4.15/B 4.16/B 4.17/B 4.18/B | No description available 
    39242 4.28/B 4.29/B 4.30/B 4.31/B 4.32/B 4.33/B 4.34/B 4.35/B 4.36/B 4.37/B 4.51/B 4.52/B 4.53/B 4.54/B 4.55/B 4.56/B 4.57/B 4.58/B 4.59/B 4.60/B 4.74/B 4.75/B 4.76/B 4.77/B 4.78/B 4.79/B 4.80/B 4.81/B 4.82/B 4.83/B 4.97/B 4.98/B 4.99/B 4.100/B 4.101/B 4.102/B 4.103/B 4.104/B 4.105/B 4.106/B | No description available 
    39243 4.1/C 4.2/C 4.3/C 4.4/C 4.5/C 4.6/C 4.7/C 4.8/C | No description available 
    39244 4.19/C 4.20/C 4.21/C 4.22/C 4.23/C 4.24/C | No description available 
    39245  
    39246 
    39247 > select add #4
    39248 
    39249 224507 atoms, 227843 bonds, 42 pseudobonds, 26692 residues, 141 models
    39250 selected 
    39251 
    39252 > ui mousemode right "translate selected models"
    39253 
    39254 > view matrix models #4,1,0,0,-66.228,0,1,0,-349.31,0,0,1,23.812
    39255 
    39256 > close #3
    39257 
    39258 > view matrix models #4,1,0,0,-405.38,0,1,0,-311.45,0,0,1,58.256
    39259 
    39260 > view matrix models #4,1,0,0,-254.62,0,1,0,-339.9,0,0,1,-50.92
    39261 
    39262 > view matrix models #4,1,0,0,-426.07,0,1,0,-256.92,0,0,1,-34.021
    39263 
    39264 > view matrix models #4,1,0,0,-530.23,0,1,0,-265.12,0,0,1,-194.49
    39265 
    39266 > view matrix models #4,1,0,0,-513.93,0,1,0,-314.27,0,0,1,-191.45
    39267 
    39268 > view matrix models #4,1,0,0,-513.75,0,1,0,-313.02,0,0,1,-191.47
    39269 
    39270 > combine #4
    39271 
    39272 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.2 to 'D' 
    39273 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.2 to 'E' 
    39274 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.2 to 'F' 
    39275 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.3 to 'G' 
    39276 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.3 to 'H' 
    39277 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.3 to 'I' 
    39278 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.4 to 'J' 
    39279 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.4 to 'K' 
    39280 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.4 to 'L' 
    39281 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.5 to 'M' 
    39282 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.5 to 'N' 
    39283 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.5 to 'O' 
    39284 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.6 to 'P' 
    39285 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.6 to 'Q' 
    39286 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.6 to 'R' 
    39287 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.7 to 'S' 
    39288 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.7 to 'T' 
    39289 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.7 to 'U' 
    39290 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.8 to 'V' 
    39291 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.8 to 'W' 
    39292 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.8 to 'X' 
    39293 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.9 to 'Y' 
    39294 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.10 to 'Z' 
    39295 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.11 to 'a' 
    39296 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.12 to 'b' 
    39297 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.13 to 'c' 
    39298 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.14 to 'd' 
    39299 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.14 to 'e' 
    39300 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.15 to 'f' 
    39301 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.15 to 'g' 
    39302 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.16 to 'h' 
    39303 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.16 to 'i' 
    39304 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.17 to 'j' 
    39305 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.17 to 'k' 
    39306 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.18 to 'l' 
    39307 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.18 to 'm' 
    39308 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.19 to 'n' 
    39309 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.20 to 'o' 
    39310 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.21 to 'p' 
    39311 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.22 to 'q' 
    39312 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.23 to 'r' 
    39313 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.24 to 's' 
    39314 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.25 to 't' 
    39315 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.26 to 'u' 
    39316 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.27 to 'v' 
    39317 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.28 to 'w' 
    39318 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.29 to 'x' 
    39319 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.30 to 'y' 
    39320 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.31 to 'z' 
    39321 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.32 to '1' 
    39322 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.33 to '2' 
    39323 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.34 to '3' 
    39324 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.35 to '4' 
    39325 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.36 to '5' 
    39326 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.37 to '6' 
    39327 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.38 to '7' 
    39328 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.39 to '8' 
    39329 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.40 to '9' 
    39330 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.41 to '0' 
    39331 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.42 to 'AA' 
    39332 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.43 to 'AB' 
    39333 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.44 to 'AC' 
    39334 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.45 to 'AD' 
    39335 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.46 to 'AE' 
    39336 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.47 to 'AF' 
    39337 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.48 to 'AG' 
    39338 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.49 to 'AH' 
    39339 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.50 to 'AI' 
    39340 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.51 to 'AJ' 
    39341 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.52 to 'AK' 
    39342 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.53 to 'AL' 
    39343 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.54 to 'AM' 
    39344 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.55 to 'AN' 
    39345 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.56 to 'AO' 
    39346 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.57 to 'AP' 
    39347 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.58 to 'AQ' 
    39348 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.59 to 'AR' 
    39349 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.60 to 'AS' 
    39350 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.61 to 'AT' 
    39351 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.62 to 'AU' 
    39352 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.63 to 'AV' 
    39353 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.64 to 'AW' 
    39354 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.65 to 'AX' 
    39355 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.66 to 'AY' 
    39356 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.67 to 'AZ' 
    39357 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.68 to 'Aa' 
    39358 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.69 to 'Ab' 
    39359 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.70 to 'Ac' 
    39360 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.71 to 'Ad' 
    39361 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.72 to 'Ae' 
    39362 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.73 to 'Af' 
    39363 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.74 to 'Ag' 
    39364 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.75 to 'Ah' 
    39365 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.76 to 'Ai' 
    39366 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.77 to 'Aj' 
    39367 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.78 to 'Ak' 
    39368 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.79 to 'Al' 
    39369 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.80 to 'Am' 
    39370 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.81 to 'An' 
    39371 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.82 to 'Ao' 
    39372 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.83 to 'Ap' 
    39373 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.84 to 'Aq' 
    39374 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.85 to 'Ar' 
    39375 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.86 to 'As' 
    39376 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.87 to 'At' 
    39377 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.88 to 'Au' 
    39378 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.89 to 'Av' 
    39379 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.90 to 'Aw' 
    39380 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.91 to 'Ax' 
    39381 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.92 to 'Ay' 
    39382 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.93 to 'Az' 
    39383 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.94 to 'A1' 
    39384 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.95 to 'A2' 
    39385 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.96 to 'A3' 
    39386 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.97 to 'A4' 
    39387 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.98 to 'A5' 
    39388 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.99 to 'A6' 
    39389 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.100 to 'A7' 
    39390 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.101 to 'A8' 
    39391 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.102 to 'A9' 
    39392 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.103 to 'A0' 
    39393 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.104 to 'BA' 
    39394 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.105 to 'BB' 
    39395 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.106 to 'BC' 
    39396 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.107 to 'BD' 
    39397 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.108 to 'BE' 
    39398 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.109 to 'BF' 
    39399 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.110 to 'BG' 
    39400 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.111 to 'BH' 
    39401 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.112 to 'BI' 
    39402 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.113 to 'BJ' 
    39403 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.114 to 'BK' 
    39404 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.115 to 'BL' 
    39405 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.116 to 'BM' 
    39406 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.117 to 'BN' 
    39407 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.117 to 'BO' 
    39408 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.118 to 'BP' 
    39409 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.118 to 'BQ' 
    39410 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.119 to 'BR' 
    39411 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.119 to 'BS' 
    39412 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.120 to 'BT' 
    39413 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.120 to 'BU' 
    39414 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.121 to 'BV' 
    39415 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.121 to 'BW' 
    39416 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.122 to 'BX' 
    39417 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.122 to 'BY' 
    39418 
    39419 > select subtract #4
    39420 
    39421 Nothing selected 
    39422 
    39423 > select add #3
    39424 
    39425 224507 atoms, 227843 bonds, 42 pseudobonds, 26692 residues, 2 models selected 
    39426 
    39427 > hide #!4 models
    39428 
    39429 > view matrix models #3,1,0,0,-503.4,0,1,0,-322.53,0,0,1,-242.38
    39430 
    39431 > view matrix models #3,1,0,0,-508.08,0,1,0,-316.17,0,0,1,-241.55
    39432 
    39433 > ui mousemode right "rotate selected models"
    39434 
    39435 > view matrix models
    39436 > #3,0.99384,-0.10889,-0.020595,-437.23,0.10906,0.99401,0.0069264,-397.45,0.019718,-0.0091298,0.99976,-251.37
    39437 
    39438 > ui mousemode right "translate selected models"
    39439 
    39440 > view matrix models
    39441 > #3,0.99384,-0.10889,-0.020595,-497.59,0.10906,0.99401,0.0069264,-443.27,0.019718,-0.0091298,0.99976,-253.96
    39442 
    39443 > color #2 #ffffb289 models
    39444 
    39445 > color #2 #ffffb26c models
    39446 
    39447 Cell requested for row 2 is out of bounds for table with 5 rows! Resizing
    39448 table model. 
    39449 
    39450 > color #3 #4e6ceeff
    39451 
    39452 > ui tool show "Fit in Map"
    39453 
    39454 The cached device pixel ratio value was stale on window expose. Please file a
    39455 QTBUG which explains how to reproduce. 
    39456 
    39457 [Repeated 1 time(s)]
    39458 
    39459 > fitmap #3 inMap #2
    39460 
    39461 Fit molecule combination (#3) to map 3xFliL.mrc (#2) using 224507 atoms 
    39462 average map value = 0.001642, steps = 204 
    39463 shifted from previous position = 24.5 
    39464 rotated from previous position = 15 degrees 
    39465 atoms outside contour = 207179, contour level = 0.0011513 
    39466  
    39467 Position of combination (#3) relative to 3xFliL.mrc (#2) coordinates: 
    39468 Matrix rotation and translation 
    39469 0.98858703 0.14365941 0.04536134 -672.25005535 
    39470 -0.14419119 0.98951195 0.00866005 -244.68410126 
    39471 -0.04364149 -0.01510192 0.99893311 -219.69361290 
    39472 Axis -0.07862165 0.29448528 -0.95241643 
    39473 Axis point -2403.97482385 4384.48479255 0.00000000 
    39474 Rotation angle (degrees) 8.69160231 
    39475 Shift along axis 190.03734942 
    39476  
    39477 
    39478 > fitmap #3 inMap #2
    39479 
    39480 Fit molecule combination (#3) to map 3xFliL.mrc (#2) using 224507 atoms 
    39481 average map value = 0.001642, steps = 28 
    39482 shifted from previous position = 0.049 
    39483 rotated from previous position = 0.00519 degrees 
    39484 atoms outside contour = 207185, contour level = 0.0011513 
    39485  
    39486 Position of combination (#3) relative to 3xFliL.mrc (#2) coordinates: 
    39487 Matrix rotation and translation 
    39488 0.98858397 0.14368297 0.04535359 -672.22491614 
    39489 -0.14421080 0.98950986 0.00857197 -244.58744867 
    39490 -0.04364618 -0.01501458 0.99893422 -219.74771178 
    39491 Axis -0.07803440 0.29444933 -0.95247584 
    39492 Axis point -2402.40026643 4384.60173062 0.00000000 
    39493 Rotation angle (degrees) 8.69236933 
    39494 Shift along axis 189.74244580 
    39495  
    39496 
    39497 > color #1 #b2b2b286 models
    39498 
    39499 > color #1 #b2b2b280 models
    39500 
    39501 > fitmap #3 inMap #2
    39502 
    39503 Fit molecule combination (#3) to map 3xFliL.mrc (#2) using 224507 atoms 
    39504 average map value = 0.001642, steps = 28 
    39505 shifted from previous position = 0.049 
    39506 rotated from previous position = 0.00961 degrees 
    39507 atoms outside contour = 207177, contour level = 0.0011513 
    39508  
    39509 Position of combination (#3) relative to 3xFliL.mrc (#2) coordinates: 
    39510 Matrix rotation and translation 
    39511 0.98859095 0.14362700 0.04537860 -672.24238357 
    39512 -0.14416208 0.98951558 0.00873027 -244.74546523 
    39513 -0.04364893 -0.01517254 0.99893171 -219.64726321 
    39514 Axis -0.07909821 0.29460620 -0.95233957 
    39515 Axis point -2405.37688551 4384.62827327 0.00000000 
    39516 Rotation angle (degrees) 8.69043685 
    39517 Shift along axis 190.24841566 
    39518  
    39519 
    39520 > fitmap #3 inMap #2
    39521 
    39522 Fit molecule combination (#3) to map 3xFliL.mrc (#2) using 224507 atoms 
    39523 average map value = 0.001642, steps = 40 
    39524 shifted from previous position = 0.0317 
    39525 rotated from previous position = 0.00727 degrees 
    39526 atoms outside contour = 207178, contour level = 0.0011513 
    39527  
    39528 Position of combination (#3) relative to 3xFliL.mrc (#2) coordinates: 
    39529 Matrix rotation and translation 
    39530 0.98858534 0.14367343 0.04535395 -672.23245438 
    39531 -0.14420305 0.98951063 0.00861303 -244.62683977 
    39532 -0.04364075 -0.01505490 0.99893385 -219.72580475 
    39533 Axis -0.07830664 0.29444384 -0.95245519 
    39534 Axis point -2403.06464622 4384.47520465 0.00000000 
    39535 Rotation angle (degrees) 8.69203333 
    39536 Shift along axis 189.89038322 
    39537  
    39538 
    39539 > fitmap #3 inMap #2
    39540 
    39541 Fit molecule combination (#3) to map 3xFliL.mrc (#2) using 224507 atoms 
    39542 average map value = 0.001642, steps = 28 
    39543 shifted from previous position = 0.0314 
    39544 rotated from previous position = 0.00482 degrees 
    39545 atoms outside contour = 207177, contour level = 0.0011513 
    39546  
    39547 Position of combination (#3) relative to 3xFliL.mrc (#2) coordinates: 
    39548 Matrix rotation and translation 
    39549 0.98858892 0.14364411 0.04536878 -672.24593804 
    39550 -0.14417737 0.98951369 0.00869172 -244.71227686 
    39551 -0.04364452 -0.01513369 0.99893249 -219.67301583 
    39552 Axis -0.07883669 0.29453907 -0.95238202 
    39553 Axis point -2404.62006849 4384.56658655 0.00000000 
    39554 Rotation angle (degrees) 8.69103238 
    39555 Shift along axis 190.13294908 
    39556  
    39557 
    39558 > fitmap #3 inMap #2
    39559 
    39560 Fit molecule combination (#3) to map 3xFliL.mrc (#2) using 224507 atoms 
    39561 average map value = 0.001642, steps = 40 
    39562 shifted from previous position = 0.0229 
    39563 rotated from previous position = 0.00351 degrees 
    39564 atoms outside contour = 207180, contour level = 0.0011513 
    39565  
    39566 Position of combination (#3) relative to 3xFliL.mrc (#2) coordinates: 
    39567 Matrix rotation and translation 
    39568 0.98858671 0.14366431 0.04535290 -672.23289860 
    39569 -0.14419488 0.98951163 0.00863530 -244.65177137 
    39570 -0.04363663 -0.01507640 0.99893370 -219.71539500 
    39571 Axis -0.07845525 0.29444093 -0.95244386 
    39572 Axis point -2403.50683165 4384.50379888 0.00000000 
    39573 Rotation angle (degrees) 8.69161151 
    39574 Shift along axis 189.97128347 
    39575  
    39576 
    39577 > view orient
    39578 
    39579 > ui mousemode right "rotate selected models"
    39580 
    39581 > view matrix models
    39582 > #3,0.99226,0.11567,0.045091,-660.47,-0.11622,0.99317,0.0099124,-267.91,-0.043637,-0.015076,0.99893,-219.72
    39583 
    39584 > ui mousemode right "translate selected models"
    39585 
    39586 > view matrix models
    39587 > #3,0.99226,0.11567,0.045091,-660.22,-0.11622,0.99317,0.0099124,-267.44,-0.043637,-0.015076,0.99893,-219.72
    39588 
    39589 > fitmap #3 inMap #2
    39590 
    39591 Fit molecule combination (#3) to map 3xFliL.mrc (#2) using 224507 atoms 
    39592 average map value = 0.001642, steps = 60 
    39593 shifted from previous position = 2.26 
    39594 rotated from previous position = 1.62 degrees 
    39595 atoms outside contour = 207179, contour level = 0.0011513 
    39596  
    39597 Position of combination (#3) relative to 3xFliL.mrc (#2) coordinates: 
    39598 Matrix rotation and translation 
    39599 0.98858235 0.14369538 0.04534951 -672.24494734 
    39600 -0.14422453 0.98950759 0.00860317 -244.60240474 
    39601 -0.04363745 -0.01504545 0.99893414 -219.73488330 
    39602 Axis -0.07823302 0.29438163 -0.95248047 
    39603 Axis point -2402.48860800 4383.99198374 0.00000000 
    39604 Rotation angle (degrees) 8.69312209 
    39605 Shift along axis 189.87847858 
    39606  
    39607 
    39608 > ui mousemode right "rotate selected models"
    39609 
    39610 > view matrix models
    39611 > #3,0.99165,0.12076,0.045138,-662.66,-0.12131,0.99257,0.0096501,-263.68,-0.043637,-0.015045,0.99893,-219.73
    39612 
    39613 > ui mousemode right "translate selected models"
    39614 
    39615 > view matrix models
    39616 > #3,0.99165,0.12076,0.045138,-663.1,-0.12131,0.99257,0.0096501,-262.22,-0.043637,-0.015045,0.99893,-219.73
    39617 
    39618 > view matrix models
    39619 > #3,0.99165,0.12076,0.045138,-662.4,-0.12131,0.99257,0.0096501,-261.77,-0.043637,-0.015045,0.99893,-219.73
    39620 
    39621 Cell requested for row 2 is out of bounds for table with 126 rows! Resizing
    39622 table model. 
    39623 
    39624 > save /Users/shoichitachiyama/Desktop/For-Chimera-
    39625 > PflAB/Resegment/Docking_Jack_model.cxs includeMaps true
    39626 
    39627 > combine #4
    39628 
    39629 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.2 to 'D' 
    39630 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.2 to 'E' 
    39631 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.2 to 'F' 
    39632 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.3 to 'G' 
    39633 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.3 to 'H' 
    39634 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.3 to 'I' 
    39635 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.4 to 'J' 
    39636 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.4 to 'K' 
    39637 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.4 to 'L' 
    39638 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.5 to 'M' 
    39639 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.5 to 'N' 
    39640 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.5 to 'O' 
    39641 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.6 to 'P' 
    39642 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.6 to 'Q' 
    39643 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.6 to 'R' 
    39644 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.7 to 'S' 
    39645 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.7 to 'T' 
    39646 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.7 to 'U' 
    39647 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.8 to 'V' 
    39648 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.8 to 'W' 
    39649 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.8 to 'X' 
    39650 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.9 to 'Y' 
    39651 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.10 to 'Z' 
    39652 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.11 to 'a' 
    39653 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.12 to 'b' 
    39654 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.13 to 'c' 
    39655 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.14 to 'd' 
    39656 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.14 to 'e' 
    39657 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.15 to 'f' 
    39658 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.15 to 'g' 
    39659 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.16 to 'h' 
    39660 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.16 to 'i' 
    39661 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.17 to 'j' 
    39662 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.17 to 'k' 
    39663 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.18 to 'l' 
    39664 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.18 to 'm' 
    39665 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.19 to 'n' 
    39666 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.20 to 'o' 
    39667 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.21 to 'p' 
    39668 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.22 to 'q' 
    39669 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.23 to 'r' 
    39670 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.24 to 's' 
    39671 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.25 to 't' 
    39672 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.26 to 'u' 
    39673 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.27 to 'v' 
    39674 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.28 to 'w' 
    39675 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.29 to 'x' 
    39676 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.30 to 'y' 
    39677 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.31 to 'z' 
    39678 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.32 to '1' 
    39679 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.33 to '2' 
    39680 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.34 to '3' 
    39681 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.35 to '4' 
    39682 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.36 to '5' 
    39683 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.37 to '6' 
    39684 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.38 to '7' 
    39685 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.39 to '8' 
    39686 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.40 to '9' 
    39687 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.41 to '0' 
    39688 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.42 to 'AA' 
    39689 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.43 to 'AB' 
    39690 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.44 to 'AC' 
    39691 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.45 to 'AD' 
    39692 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.46 to 'AE' 
    39693 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.47 to 'AF' 
    39694 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.48 to 'AG' 
    39695 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.49 to 'AH' 
    39696 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.50 to 'AI' 
    39697 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.51 to 'AJ' 
    39698 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.52 to 'AK' 
    39699 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.53 to 'AL' 
    39700 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.54 to 'AM' 
    39701 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.55 to 'AN' 
    39702 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.56 to 'AO' 
    39703 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.57 to 'AP' 
    39704 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.58 to 'AQ' 
    39705 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.59 to 'AR' 
    39706 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.60 to 'AS' 
    39707 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.61 to 'AT' 
    39708 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.62 to 'AU' 
    39709 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.63 to 'AV' 
    39710 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.64 to 'AW' 
    39711 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.65 to 'AX' 
    39712 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.66 to 'AY' 
    39713 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.67 to 'AZ' 
    39714 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.68 to 'Aa' 
    39715 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.69 to 'Ab' 
    39716 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.70 to 'Ac' 
    39717 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.71 to 'Ad' 
    39718 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.72 to 'Ae' 
    39719 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.73 to 'Af' 
    39720 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.74 to 'Ag' 
    39721 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.75 to 'Ah' 
    39722 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.76 to 'Ai' 
    39723 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.77 to 'Aj' 
    39724 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.78 to 'Ak' 
    39725 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.79 to 'Al' 
    39726 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.80 to 'Am' 
    39727 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.81 to 'An' 
    39728 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.82 to 'Ao' 
    39729 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.83 to 'Ap' 
    39730 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.84 to 'Aq' 
    39731 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.85 to 'Ar' 
    39732 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.86 to 'As' 
    39733 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.87 to 'At' 
    39734 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.88 to 'Au' 
    39735 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.89 to 'Av' 
    39736 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.90 to 'Aw' 
    39737 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.91 to 'Ax' 
    39738 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.92 to 'Ay' 
    39739 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.93 to 'Az' 
    39740 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.94 to 'A1' 
    39741 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.95 to 'A2' 
    39742 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.96 to 'A3' 
    39743 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.97 to 'A4' 
    39744 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.98 to 'A5' 
    39745 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.99 to 'A6' 
    39746 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.100 to 'A7' 
    39747 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.101 to 'A8' 
    39748 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.102 to 'A9' 
    39749 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.103 to 'A0' 
    39750 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.104 to 'BA' 
    39751 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.105 to 'BB' 
    39752 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.106 to 'BC' 
    39753 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.107 to 'BD' 
    39754 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.108 to 'BE' 
    39755 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.109 to 'BF' 
    39756 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.110 to 'BG' 
    39757 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.111 to 'BH' 
    39758 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.112 to 'BI' 
    39759 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.113 to 'BJ' 
    39760 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.114 to 'BK' 
    39761 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.115 to 'BL' 
    39762 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.116 to 'BM' 
    39763 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.117 to 'BN' 
    39764 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.117 to 'BO' 
    39765 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.118 to 'BP' 
    39766 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.118 to 'BQ' 
    39767 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.119 to 'BR' 
    39768 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.119 to 'BS' 
    39769 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.120 to 'BT' 
    39770 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.120 to 'BU' 
    39771 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.121 to 'BV' 
    39772 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.121 to 'BW' 
    39773 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.122 to 'BX' 
    39774 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.122 to 'BY' 
    39775 
    39776 > matchmaker #5 to #3
    39777 
    39778 Parameters 
    39779 --- 
    39780 Chain pairing | bb 
    39781 Alignment algorithm | Needleman-Wunsch 
    39782 Similarity matrix | BLOSUM-62 
    39783 SS fraction | 0.3 
    39784 Gap open (HH/SS/other) | 18/18/6 
    39785 Gap extend | 1 
    39786 SS matrix |  |  | H | S | O 
    39787 ---|---|---|--- 
    39788 H | 6 | -9 | -6 
    39789 S |  | 6 | -6 
    39790 O |  |  | 4 
    39791 Iteration cutoff | 2 
    39792  
    39793 Matchmaker combination, chain v (#3) with combination, chain v (#5), sequence
    39794 alignment score = 6376.6 
    39795 RMSD between 1250 pruned atom pairs is 0.000 angstroms; (across all 1250
    39796 pairs: 0.000) 
    39797  
    39798 
    39799 > select subtract #3
    39800 
    39801 Nothing selected 
    39802 
    39803 > hide #!3 models
    39804 
    39805 > splits #5
    39806 
    39807 Unknown command: splits #5 
    39808 
    39809 > split #5
    39810 
    39811 Split combination (#5) into 149 models 
    39812 Chain information for combination 0 #5.1 
    39813 --- 
    39814 Chain | Description 
    39815 0 | No description available 
    39816  
    39817 Chain information for combination 1 #5.2 
    39818 --- 
    39819 Chain | Description 
    39820 1 | No description available 
    39821  
    39822 Chain information for combination 2 #5.3 
    39823 --- 
    39824 Chain | Description 
    39825 2 | No description available 
    39826  
    39827 Chain information for combination 3 #5.4 
    39828 --- 
    39829 Chain | Description 
    39830 3 | No description available 
    39831  
    39832 Chain information for combination 4 #5.5 
    39833 --- 
    39834 Chain | Description 
    39835 4 | No description available 
    39836  
    39837 Chain information for combination 5 #5.6 
    39838 --- 
    39839 Chain | Description 
    39840 5 | No description available 
    39841  
    39842 Chain information for combination 6 #5.7 
    39843 --- 
    39844 Chain | Description 
    39845 6 | No description available 
    39846  
    39847 Chain information for combination 7 #5.8 
    39848 --- 
    39849 Chain | Description 
    39850 7 | No description available 
    39851  
    39852 Chain information for combination 8 #5.9 
    39853 --- 
    39854 Chain | Description 
    39855 8 | No description available 
    39856  
    39857 Chain information for combination 9 #5.10 
    39858 --- 
    39859 Chain | Description 
    39860 9 | No description available 
    39861  
    39862 Chain information for combination A #5.11 
    39863 --- 
    39864 Chain | Description 
    39865 A | No description available 
    39866  
    39867 Chain information for combination A0 #5.12 
    39868 --- 
    39869 Chain | Description 
    39870 A0 | No description available 
    39871  
    39872 Chain information for combination A1 #5.13 
    39873 --- 
    39874 Chain | Description 
    39875 A1 | No description available 
    39876  
    39877 Chain information for combination A2 #5.14 
    39878 --- 
    39879 Chain | Description 
    39880 A2 | No description available 
    39881  
    39882 Chain information for combination A3 #5.15 
    39883 --- 
    39884 Chain | Description 
    39885 A3 | No description available 
    39886  
    39887 Chain information for combination A4 #5.16 
    39888 --- 
    39889 Chain | Description 
    39890 A4 | No description available 
    39891  
    39892 Chain information for combination A5 #5.17 
    39893 --- 
    39894 Chain | Description 
    39895 A5 | No description available 
    39896  
    39897 Chain information for combination A6 #5.18 
    39898 --- 
    39899 Chain | Description 
    39900 A6 | No description available 
    39901  
    39902 Chain information for combination A7 #5.19 
    39903 --- 
    39904 Chain | Description 
    39905 A7 | No description available 
    39906  
    39907 Chain information for combination A8 #5.20 
    39908 --- 
    39909 Chain | Description 
    39910 A8 | No description available 
    39911  
    39912 Chain information for combination A9 #5.21 
    39913 --- 
    39914 Chain | Description 
    39915 A9 | No description available 
    39916  
    39917 Chain information for combination AA #5.22 
    39918 --- 
    39919 Chain | Description 
    39920 AA | No description available 
    39921  
    39922 Chain information for combination AB #5.23 
    39923 --- 
    39924 Chain | Description 
    39925 AB | No description available 
    39926  
    39927 Chain information for combination AC #5.24 
    39928 --- 
    39929 Chain | Description 
    39930 AC | No description available 
    39931  
    39932 Chain information for combination AD #5.25 
    39933 --- 
    39934 Chain | Description 
    39935 AD | No description available 
    39936  
    39937 Chain information for combination AE #5.26 
    39938 --- 
    39939 Chain | Description 
    39940 AE | No description available 
    39941  
    39942 Chain information for combination AF #5.27 
    39943 --- 
    39944 Chain | Description 
    39945 AF | No description available 
    39946  
    39947 Chain information for combination AG #5.28 
    39948 --- 
    39949 Chain | Description 
    39950 AG | No description available 
    39951  
    39952 Chain information for combination AH #5.29 
    39953 --- 
    39954 Chain | Description 
    39955 AH | No description available 
    39956  
    39957 Chain information for combination AI #5.30 
    39958 --- 
    39959 Chain | Description 
    39960 AI | No description available 
    39961  
    39962 Chain information for combination AJ #5.31 
    39963 --- 
    39964 Chain | Description 
    39965 AJ | No description available 
    39966  
    39967 Chain information for combination AK #5.32 
    39968 --- 
    39969 Chain | Description 
    39970 AK | No description available 
    39971  
    39972 Chain information for combination AL #5.33 
    39973 --- 
    39974 Chain | Description 
    39975 AL | No description available 
    39976  
    39977 Chain information for combination AM #5.34 
    39978 --- 
    39979 Chain | Description 
    39980 AM | No description available 
    39981  
    39982 Chain information for combination AN #5.35 
    39983 --- 
    39984 Chain | Description 
    39985 AN | No description available 
    39986  
    39987 Chain information for combination AO #5.36 
    39988 --- 
    39989 Chain | Description 
    39990 AO | No description available 
    39991  
    39992 Chain information for combination AP #5.37 
    39993 --- 
    39994 Chain | Description 
    39995 AP | No description available 
    39996  
    39997 Chain information for combination AQ #5.38 
    39998 --- 
    39999 Chain | Description 
    40000 AQ | No description available 
    40001  
    40002 Chain information for combination AR #5.39 
    40003 --- 
    40004 Chain | Description 
    40005 AR | No description available 
    40006  
    40007 Chain information for combination AS #5.40 
    40008 --- 
    40009 Chain | Description 
    40010 AS | No description available 
    40011  
    40012 Chain information for combination AT #5.41 
    40013 --- 
    40014 Chain | Description 
    40015 AT | No description available 
    40016  
    40017 Chain information for combination AU #5.42 
    40018 --- 
    40019 Chain | Description 
    40020 AU | No description available 
    40021  
    40022 Chain information for combination AV #5.43 
    40023 --- 
    40024 Chain | Description 
    40025 AV | No description available 
    40026  
    40027 Chain information for combination AW #5.44 
    40028 --- 
    40029 Chain | Description 
    40030 AW | No description available 
    40031  
    40032 Chain information for combination AX #5.45 
    40033 --- 
    40034 Chain | Description 
    40035 AX | No description available 
    40036  
    40037 Chain information for combination AY #5.46 
    40038 --- 
    40039 Chain | Description 
    40040 AY | No description available 
    40041  
    40042 Chain information for combination AZ #5.47 
    40043 --- 
    40044 Chain | Description 
    40045 AZ | No description available 
    40046  
    40047 Chain information for combination Aa #5.48 
    40048 --- 
    40049 Chain | Description 
    40050 Aa | No description available 
    40051  
    40052 Chain information for combination Ab #5.49 
    40053 --- 
    40054 Chain | Description 
    40055 Ab | No description available 
    40056  
    40057 Chain information for combination Ac #5.50 
    40058 --- 
    40059 Chain | Description 
    40060 Ac | No description available 
    40061  
    40062 Chain information for combination Ad #5.51 
    40063 --- 
    40064 Chain | Description 
    40065 Ad | No description available 
    40066  
    40067 Chain information for combination Ae #5.52 
    40068 --- 
    40069 Chain | Description 
    40070 Ae | No description available 
    40071  
    40072 Chain information for combination Af #5.53 
    40073 --- 
    40074 Chain | Description 
    40075 Af | No description available 
    40076  
    40077 Chain information for combination Ag #5.54 
    40078 --- 
    40079 Chain | Description 
    40080 Ag | No description available 
    40081  
    40082 Chain information for combination Ah #5.55 
    40083 --- 
    40084 Chain | Description 
    40085 Ah | No description available 
    40086  
    40087 Chain information for combination Ai #5.56 
    40088 --- 
    40089 Chain | Description 
    40090 Ai | No description available 
    40091  
    40092 Chain information for combination Aj #5.57 
    40093 --- 
    40094 Chain | Description 
    40095 Aj | No description available 
    40096  
    40097 Chain information for combination Ak #5.58 
    40098 --- 
    40099 Chain | Description 
    40100 Ak | No description available 
    40101  
    40102 Chain information for combination Al #5.59 
    40103 --- 
    40104 Chain | Description 
    40105 Al | No description available 
    40106  
    40107 Chain information for combination Am #5.60 
    40108 --- 
    40109 Chain | Description 
    40110 Am | No description available 
    40111  
    40112 Chain information for combination An #5.61 
    40113 --- 
    40114 Chain | Description 
    40115 An | No description available 
    40116  
    40117 Chain information for combination Ao #5.62 
    40118 --- 
    40119 Chain | Description 
    40120 Ao | No description available 
    40121  
    40122 Chain information for combination Ap #5.63 
    40123 --- 
    40124 Chain | Description 
    40125 Ap | No description available 
    40126  
    40127 Chain information for combination Aq #5.64 
    40128 --- 
    40129 Chain | Description 
    40130 Aq | No description available 
    40131  
    40132 Chain information for combination Ar #5.65 
    40133 --- 
    40134 Chain | Description 
    40135 Ar | No description available 
    40136  
    40137 Chain information for combination As #5.66 
    40138 --- 
    40139 Chain | Description 
    40140 As | No description available 
    40141  
    40142 Chain information for combination At #5.67 
    40143 --- 
    40144 Chain | Description 
    40145 At | No description available 
    40146  
    40147 Chain information for combination Au #5.68 
    40148 --- 
    40149 Chain | Description 
    40150 Au | No description available 
    40151  
    40152 Chain information for combination Av #5.69 
    40153 --- 
    40154 Chain | Description 
    40155 Av | No description available 
    40156  
    40157 Chain information for combination Aw #5.70 
    40158 --- 
    40159 Chain | Description 
    40160 Aw | No description available 
    40161  
    40162 Chain information for combination Ax #5.71 
    40163 --- 
    40164 Chain | Description 
    40165 Ax | No description available 
    40166  
    40167 Chain information for combination Ay #5.72 
    40168 --- 
    40169 Chain | Description 
    40170 Ay | No description available 
    40171  
    40172 Chain information for combination Az #5.73 
    40173 --- 
    40174 Chain | Description 
    40175 Az | No description available 
    40176  
    40177 Chain information for combination B #5.74 
    40178 --- 
    40179 Chain | Description 
    40180 B | No description available 
    40181  
    40182 Chain information for combination BA #5.75 
    40183 --- 
    40184 Chain | Description 
    40185 BA | No description available 
    40186  
    40187 Chain information for combination BB #5.76 
    40188 --- 
    40189 Chain | Description 
    40190 BB | No description available 
    40191  
    40192 Chain information for combination BC #5.77 
    40193 --- 
    40194 Chain | Description 
    40195 BC | No description available 
    40196  
    40197 Chain information for combination BD #5.78 
    40198 --- 
    40199 Chain | Description 
    40200 BD | No description available 
    40201  
    40202 Chain information for combination BE #5.79 
    40203 --- 
    40204 Chain | Description 
    40205 BE | No description available 
    40206  
    40207 Chain information for combination BF #5.80 
    40208 --- 
    40209 Chain | Description 
    40210 BF | No description available 
    40211  
    40212 Chain information for combination BG #5.81 
    40213 --- 
    40214 Chain | Description 
    40215 BG | No description available 
    40216  
    40217 Chain information for combination BH #5.82 
    40218 --- 
    40219 Chain | Description 
    40220 BH | No description available 
    40221  
    40222 Chain information for combination BI #5.83 
    40223 --- 
    40224 Chain | Description 
    40225 BI | No description available 
    40226  
    40227 Chain information for combination BJ #5.84 
    40228 --- 
    40229 Chain | Description 
    40230 BJ | No description available 
    40231  
    40232 Chain information for combination BK #5.85 
    40233 --- 
    40234 Chain | Description 
    40235 BK | No description available 
    40236  
    40237 Chain information for combination BL #5.86 
    40238 --- 
    40239 Chain | Description 
    40240 BL | No description available 
    40241  
    40242 Chain information for combination BM #5.87 
    40243 --- 
    40244 Chain | Description 
    40245 BM | No description available 
    40246  
    40247 Chain information for combination BN #5.88 
    40248 --- 
    40249 Chain | Description 
    40250 BN | No description available 
    40251  
    40252 Chain information for combination BO #5.89 
    40253 --- 
    40254 Chain | Description 
    40255 BO | No description available 
    40256  
    40257 Chain information for combination BP #5.90 
    40258 --- 
    40259 Chain | Description 
    40260 BP | No description available 
    40261  
    40262 Chain information for combination BQ #5.91 
    40263 --- 
    40264 Chain | Description 
    40265 BQ | No description available 
    40266  
    40267 Chain information for combination BR #5.92 
    40268 --- 
    40269 Chain | Description 
    40270 BR | No description available 
    40271  
    40272 Chain information for combination BS #5.93 
    40273 --- 
    40274 Chain | Description 
    40275 BS | No description available 
    40276  
    40277 Chain information for combination BT #5.94 
    40278 --- 
    40279 Chain | Description 
    40280 BT | No description available 
    40281  
    40282 Chain information for combination BU #5.95 
    40283 --- 
    40284 Chain | Description 
    40285 BU | No description available 
    40286  
    40287 Chain information for combination BV #5.96 
    40288 --- 
    40289 Chain | Description 
    40290 BV | No description available 
    40291  
    40292 Chain information for combination BW #5.97 
    40293 --- 
    40294 Chain | Description 
    40295 BW | No description available 
    40296  
    40297 Chain information for combination BX #5.98 
    40298 --- 
    40299 Chain | Description 
    40300 BX | No description available 
    40301  
    40302 Chain information for combination BY #5.99 
    40303 --- 
    40304 Chain | Description 
    40305 BY | No description available 
    40306  
    40307 Chain information for combination C #5.100 
    40308 --- 
    40309 Chain | Description 
    40310 C | No description available 
    40311  
    40312 Chain information for combination D #5.101 
    40313 --- 
    40314 Chain | Description 
    40315 D | No description available 
    40316  
    40317 Chain information for combination E #5.102 
    40318 --- 
    40319 Chain | Description 
    40320 E | No description available 
    40321  
    40322 Chain information for combination F #5.103 
    40323 --- 
    40324 Chain | Description 
    40325 F | No description available 
    40326  
    40327 Chain information for combination G #5.104 
    40328 --- 
    40329 Chain | Description 
    40330 G | No description available 
    40331  
    40332 Chain information for combination H #5.105 
    40333 --- 
    40334 Chain | Description 
    40335 H | No description available 
    40336  
    40337 Chain information for combination I #5.106 
    40338 --- 
    40339 Chain | Description 
    40340 I | No description available 
    40341  
    40342 Chain information for combination J #5.107 
    40343 --- 
    40344 Chain | Description 
    40345 J | No description available 
    40346  
    40347 Chain information for combination K #5.108 
    40348 --- 
    40349 Chain | Description 
    40350 K | No description available 
    40351  
    40352 Chain information for combination L #5.109 
    40353 --- 
    40354 Chain | Description 
    40355 L | No description available 
    40356  
    40357 Chain information for combination M #5.110 
    40358 --- 
    40359 Chain | Description 
    40360 M | No description available 
    40361  
    40362 Chain information for combination N #5.111 
    40363 --- 
    40364 Chain | Description 
    40365 N | No description available 
    40366  
    40367 Chain information for combination O #5.112 
    40368 --- 
    40369 Chain | Description 
    40370 O | No description available 
    40371  
    40372 Chain information for combination P #5.113 
    40373 --- 
    40374 Chain | Description 
    40375 P | No description available 
    40376  
    40377 Chain information for combination Q #5.114 
    40378 --- 
    40379 Chain | Description 
    40380 Q | No description available 
    40381  
    40382 Chain information for combination R #5.115 
    40383 --- 
    40384 Chain | Description 
    40385 R | No description available 
    40386  
    40387 Chain information for combination S #5.116 
    40388 --- 
    40389 Chain | Description 
    40390 S | No description available 
    40391  
    40392 Chain information for combination T #5.117 
    40393 --- 
    40394 Chain | Description 
    40395 T | No description available 
    40396  
    40397 Chain information for combination U #5.118 
    40398 --- 
    40399 Chain | Description 
    40400 U | No description available 
    40401  
    40402 Chain information for combination V #5.119 
    40403 --- 
    40404 Chain | Description 
    40405 V | No description available 
    40406  
    40407 Chain information for combination W #5.120 
    40408 --- 
    40409 Chain | Description 
    40410 W | No description available 
    40411  
    40412 Chain information for combination X #5.121 
    40413 --- 
    40414 Chain | Description 
    40415 X | No description available 
    40416  
    40417 Chain information for combination Y #5.122 
    40418 --- 
    40419 Chain | Description 
    40420 Y | No description available 
    40421  
    40422 Chain information for combination Z #5.123 
    40423 --- 
    40424 Chain | Description 
    40425 Z | No description available 
    40426  
    40427 Chain information for combination a #5.124 
    40428 --- 
    40429 Chain | Description 
    40430 a | No description available 
    40431  
    40432 Chain information for combination b #5.125 
    40433 --- 
    40434 Chain | Description 
    40435 b | No description available 
    40436  
    40437 Chain information for combination c #5.126 
    40438 --- 
    40439 Chain | Description 
    40440 c | No description available 
    40441  
    40442 Chain information for combination d #5.127 
    40443 --- 
    40444 Chain | Description 
    40445 d | No description available 
    40446  
    40447 Chain information for combination e #5.128 
    40448 --- 
    40449 Chain | Description 
    40450 e | No description available 
    40451  
    40452 Chain information for combination f #5.129 
    40453 --- 
    40454 Chain | Description 
    40455 f | No description available 
    40456  
    40457 Chain information for combination g #5.130 
    40458 --- 
    40459 Chain | Description 
    40460 g | No description available 
    40461  
    40462 Chain information for combination h #5.131 
    40463 --- 
    40464 Chain | Description 
    40465 h | No description available 
    40466  
    40467 Chain information for combination i #5.132 
    40468 --- 
    40469 Chain | Description 
    40470 i | No description available 
    40471  
    40472 Chain information for combination j #5.133 
    40473 --- 
    40474 Chain | Description 
    40475 j | No description available 
    40476  
    40477 Chain information for combination k #5.134 
    40478 --- 
    40479 Chain | Description 
    40480 k | No description available 
    40481  
    40482 Chain information for combination l #5.135 
    40483 --- 
    40484 Chain | Description 
    40485 l | No description available 
    40486  
    40487 Chain information for combination m #5.136 
    40488 --- 
    40489 Chain | Description 
    40490 m | No description available 
    40491  
    40492 Chain information for combination n #5.137 
    40493 --- 
    40494 Chain | Description 
    40495 n | No description available 
    40496  
    40497 Chain information for combination o #5.138 
    40498 --- 
    40499 Chain | Description 
    40500 o | No description available 
    40501  
    40502 Chain information for combination p #5.139 
    40503 --- 
    40504 Chain | Description 
    40505 p | No description available 
    40506  
    40507 Chain information for combination q #5.140 
    40508 --- 
    40509 Chain | Description 
    40510 q | No description available 
    40511  
    40512 Chain information for combination r #5.141 
    40513 --- 
    40514 Chain | Description 
    40515 r | No description available 
    40516  
    40517 Chain information for combination s #5.142 
    40518 --- 
    40519 Chain | Description 
    40520 s | No description available 
    40521  
    40522 Chain information for combination t #5.143 
    40523 --- 
    40524 Chain | Description 
    40525 t | No description available 
    40526  
    40527 Chain information for combination u #5.144 
    40528 --- 
    40529 Chain | Description 
    40530 u | No description available 
    40531  
    40532 Chain information for combination v #5.145 
    40533 --- 
    40534 Chain | Description 
    40535 v | No description available 
    40536  
    40537 Chain information for combination w #5.146 
    40538 --- 
    40539 Chain | Description 
    40540 w | No description available 
    40541  
    40542 Chain information for combination x #5.147 
    40543 --- 
    40544 Chain | Description 
    40545 x | No description available 
    40546  
    40547 Chain information for combination y #5.148 
    40548 --- 
    40549 Chain | Description 
    40550 y | No description available 
    40551  
    40552 Chain information for combination z #5.149 
    40553 --- 
    40554 Chain | Description 
    40555 z | No description available 
    40556  
    40557 
    40558 > surface dust #1 size 21.4
    40559 
    40560 > surface dust #2 size 21.4
    40561 
    40562 > hide #5.1 models
    40563 
    40564 > show #5.1 models
    40565 
    40566 > hide #5.1 models
    40567 
    40568 > show #5.1 models
    40569 
    40570 > select add #5.1
    40571 
    40572 186 atoms, 188 bonds, 24 residues, 1 model selected 
    40573 
    40574 > select subtract #5.1
    40575 
    40576 Nothing selected 
    40577 
    40578 > hide #5.1 models
    40579 
    40580 > hide #5.2 models
    40581 
    40582 > show #5.2 models
    40583 
    40584 > show #5.1 models
    40585 
    40586 > hide #5.1 models
    40587 
    40588 > show #5.1 models
    40589 
    40590 > hide #5.4 models
    40591 
    40592 > show #5.4 models
    40593 
    40594 > hide #5.4 models
    40595 
    40596 > show #5.4 models
    40597 
    40598 Drag select of 2201 residues 
    40599 
    40600 > hide #!5.11 models
    40601 
    40602 > hide #5.15 models
    40603 
    40604 > hide #5.30 models
    40605 
    40606 > hide #5.53 models
    40607 
    40608 > hide #!5.100 models
    40609 
    40610 > hide #!5.101 models
    40611 
    40612 > hide #5.102 models
    40613 
    40614 > hide #!5.103 models
    40615 
    40616 > hide #!5.104 models
    40617 
    40618 > hide #5.105 models
    40619 
    40620 > hide #!5.106 models
    40621 
    40622 > hide #!5.107 models
    40623 
    40624 > hide #5.108 models
    40625 
    40626 > hide #!5.109 models
    40627 
    40628 > hide #!5.110 models
    40629 
    40630 > hide #5.111 models
    40631 
    40632 > hide #!5.112 models
    40633 
    40634 > hide #!5.113 models
    40635 
    40636 > hide #5.114 models
    40637 
    40638 > hide #!5.115 models
    40639 
    40640 > hide #!5.116 models
    40641 
    40642 > hide #5.117 models
    40643 
    40644 > hide #!5.118 models
    40645 
    40646 > hide #!5.119 models
    40647 
    40648 > hide #5.120 models
    40649 
    40650 > hide #!5.121 models
    40651 
    40652 > hide #5.145 models
    40653 
    40654 > hide #5.74 models
    40655 
    40656 Drag select of 334 residues 
    40657 
    40658 > hide #5.78 models
    40659 
    40660 > hide #5.79 models
    40661 
    40662 > hide #5.80 models
    40663 
    40664 > hide #5.81 models
    40665 
    40666 > hide #5.82 models
    40667 
    40668 > hide #5.83 models
    40669 
    40670 > hide #5.84 models
    40671 
    40672 > hide #5.85 models
    40673 
    40674 > hide #5.86 models
    40675 
    40676 > hide #5.87 models
    40677 
    40678 > hide #5.73 models
    40679 
    40680 > hide #5.72 models
    40681 
    40682 > hide #5.71 models
    40683 
    40684 > hide #5.70 models
    40685 
    40686 > hide #5.69 models
    40687 
    40688 > hide #5.68 models
    40689 
    40690 > hide #5.67 models
    40691 
    40692 > hide #5.66 models
    40693 
    40694 > hide #5.65 models
    40695 
    40696 > hide #5.64 models
    40697 
    40698 > hide #5.41 models
    40699 
    40700 > hide #5.42 models
    40701 
    40702 > hide #5.43 models
    40703 
    40704 > hide #5.44 models
    40705 
    40706 > hide #5.45 models
    40707 
    40708 > hide #5.46 models
    40709 
    40710 > hide #5.47 models
    40711 
    40712 > hide #5.48 models
    40713 
    40714 > hide #5.49 models
    40715 
    40716 > hide #5.50 models
    40717 
    40718 > hide #5.22 models
    40719 
    40720 > hide #5.23 models
    40721 
    40722 > hide #5.24 models
    40723 
    40724 > hide #5.25 models
    40725 
    40726 > hide #5.26 models
    40727 
    40728 > hide #5.27 models
    40729 
    40730 > hide #5.8 models
    40731 
    40732 > hide #5.9 models
    40733 
    40734 > hide #5.10 models
    40735 
    40736 > hide #5.1 models
    40737 
    40738 Drag select of 165 residues 
    40739 
    40740 > hide #!5.122 models
    40741 
    40742 > hide #!5.123 models
    40743 
    40744 > hide #!5.124 models
    40745 
    40746 > hide #!5.125 models
    40747 
    40748 > hide #!5.126 models
    40749 
    40750 Drag select of 129 residues 
    40751 
    40752 > hide #5.90 models
    40753 
    40754 > hide #5.91 models
    40755 
    40756 Drag select of 38 residues 
    40757 
    40758 > hide #5.138 models
    40759 
    40760 Drag select of 339 residues 
    40761 
    40762 > hide #5.139 models
    40763 
    40764 > hide #5.140 models
    40765 
    40766 > hide #5.92 models
    40767 
    40768 > hide #5.93 models
    40769 
    40770 > hide #5.17 models
    40771 
    40772 Drag select of 32 residues 
    40773 
    40774 > hide #5.94 models
    40775 
    40776 > hide #5.95 models
    40777 
    40778 > select clear
    40779 
    40780 Drag select of 928 residues, 1 pseudobonds 
    40781 
    40782 > hide #5.129 models
    40783 
    40784 > hide #!5.130 models
    40785 
    40786 > hide #5.131 models
    40787 
    40788 > hide #!5.132 models
    40789 
    40790 > show #!5.132 models
    40791 
    40792 Drag select of 54 residues 
    40793 
    40794 > select clear
    40795 
    40796 Drag select of 336 residues 
    40797 
    40798 > hide #!5.132 models
    40799 
    40800 > show #!5.132 models
    40801 
    40802 > hide #5.77 models
    40803 
    40804 > hide #5.76 models
    40805 
    40806 > hide #5.20 models
    40807 
    40808 > hide #5.19 models
    40809 
    40810 > hide #5.18 models
    40811 
    40812 > hide #5.16 models
    40813 
    40814 Drag select of 26 residues 
    40815 
    40816 > hide #5.21 models
    40817 
    40818 > hide #5.12 models
    40819 
    40820 > select clear
    40821 
    40822 [Repeated 1 time(s)]Drag select of 3 residues 
    40823 
    40824 > hide #5.75 models
    40825 
    40826 Drag select of 5 residues 
    40827 
    40828 > hide #5.29 models
    40829 
    40830 Drag select of 110 residues 
    40831 
    40832 > hide #5.51 models
    40833 
    40834 > hide #5.52 models
    40835 
    40836 Drag select of 48 residues 
    40837 
    40838 > hide #5.143 models
    40839 
    40840 > hide #5.144 models
    40841 
    40842 Drag select of 100 residues 
    40843 
    40844 > hide #5.13 models
    40845 
    40846 > hide #5.14 models
    40847 
    40848 > select clear
    40849 
    40850 Drag select of 70 residues 
    40851 
    40852 > hide #5.28 models
    40853 
    40854 > volume #1 level 0.008564
    40855 
    40856 > close #5.8-10,12-30#5.11
    40857 
    40858 > close #5.41-53
    40859 
    40860 > close #5.64-87
    40861 
    40862 > close #5.90-95
    40863 
    40864 > close
    40865 > #5.102,105,108,111,114,117,120#5.100-101,103-104,106-107,109-110,112-113,115-116,118-119,121-126
    40866 
    40867 > close #5.129,131#5.130
    40868 
    40869 > close #5.138-140
    40870 
    40871 > close #5.143-145
    40872 
    40873 > show #5.1 models
    40874 
    40875 > hide #5.1 models
    40876 
    40877 > show #5.1 models
    40878 
    40879 > hide #5.1 models
    40880 
    40881 > close #5.1
    40882 
    40883 > hide #!5.134 models
    40884 
    40885 > show #!5.134 models
    40886 
    40887 > hide #!5.134 models
    40888 
    40889 > show #!5.134 models
    40890 
    40891 > hide #5.133 models
    40892 
    40893 > show #5.133 models
    40894 
    40895 > hide #5.133 models
    40896 
    40897 > show #5.133 models
    40898 
    40899 > hide #!5.134 models
    40900 
    40901 > show #!5.134 models
    40902 
    40903 > hide #!5.134 models
    40904 
    40905 > show #!5.134 models
    40906 
    40907 > hide #5.135 models
    40908 
    40909 > show #5.135 models
    40910 
    40911 > hide #!5.136 models
    40912 
    40913 > show #!5.136 models
    40914 
    40915 > hide #!5.136 models
    40916 
    40917 > show #!5.136 models
    40918 
    40919 > volume #1 level 0.002682
    40920 
    40921 > volume #1 level 0.0208
    40922 
    40923 > volume #1 level 0.01342
    40924 
    40925 > save /Users/shoichitachiyama/Desktop/For-Chimera-
    40926 > PflAB/Resegment/Docking_Jack_model.cxs includeMaps true
    40927 
    40928 ——— End of log from Thu Jul 10 22:06:04 2025 ———
    40929 
    40930 opened ChimeraX session 
    40931 
    40932 > open /Users/shoichi/Desktop/Resegment-Fixed/Part3/PflABY.mrc
    40933 
    40934 Opened PflABY.mrc as #6, grid size 200,200,200, pixel 2.14, shown at level
    40935 0.0308, step 1, values float32 
    40936 
    40937 > hide #!2 models
    40938 
    40939 > hide #!1 models
    40940 
    40941 > volume #6 level 0.00115
    40942 
    40943 > surface dust #6 size 21.4
    40944 
    40945 > surface dust #6 size 50
    40946 
    40947 > vop gaussian #6 sd 3
    40948 
    40949 Opened PflABY.mrc gaussian as #7, grid size 200,200,200, pixel 2.14, shown at
    40950 step 1, values float32 
    40951 
    40952 > volume #7 level 0.00115
    40953 
    40954 > close #7
    40955 
    40956 > vop gaussian #6 sd 2
    40957 
    40958 Opened PflABY.mrc gaussian as #7, grid size 200,200,200, pixel 2.14, shown at
    40959 step 1, values float32 
    40960 
    40961 > volume #7 level 0.00115
    40962 
    40963 > hide #!7 models
    40964 
    40965 > color #7 #5e5e5e80 models
    40966 
    40967 > show #!7 models
    40968 
    40969 > hide #5.2 models
    40970 
    40971 > show #5.2 models
    40972 
    40973 > hide #5.2 models
    40974 
    40975 > hide #5.3 models
    40976 
    40977 > hide #!5 models
    40978 
    40979 > show #!5 models
    40980 
    40981 > hide #!7 models
    40982 
    40983 Drag select of 2343 residues 
    40984 
    40985 > select clear
    40986 
    40987 > view orient
    40988 
    40989 > turn x 90
    40990 
    40991 [Repeated 2 time(s)]Drag select of 1274 residues 
    40992 
    40993 > select add #5.4
    40994 
    40995 10820 atoms, 807 bonds, 1318 residues, 28 models selected 
    40996 
    40997 > select subtract #5.4
    40998 
    40999 10021 atoms, 1220 residues, 27 models selected 
    41000 
    41001 > hide #5.4 models
    41002 
    41003 > hide #5.5 models
    41004 
    41005 > hide #5.6 models
    41006 
    41007 > hide #5.7 models
    41008 
    41009 > hide #5.31 models
    41010 
    41011 > hide #5.32 models
    41012 
    41013 > hide #5.33 models
    41014 
    41015 > hide #5.34 models
    41016 
    41017 > hide #5.35 models
    41018 
    41019 > hide #5.36 models
    41020 
    41021 > hide #5.37 models
    41022 
    41023 > hide #5.38 models
    41024 
    41025 > hide #5.39 models
    41026 
    41027 > hide #5.40 models
    41028 
    41029 > hide #5.54 models
    41030 
    41031 > hide #5.55 models
    41032 
    41033 > hide #5.56 models
    41034 
    41035 > hide #5.57 models
    41036 
    41037 > hide #5.58 models
    41038 
    41039 > hide #5.59 models
    41040 
    41041 > hide #5.60 models
    41042 
    41043 > hide #5.61 models
    41044 
    41045 > hide #5.62 models
    41046 
    41047 > hide #5.63 models
    41048 
    41049 > hide #5.146 models
    41050 
    41051 > hide #5.147 models
    41052 
    41053 > hide #5.148 models
    41054 
    41055 > hide #5.149 models
    41056 
    41057 > select clear
    41058 
    41059 > select add #5.88
    41060 
    41061 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    41062 
    41063 > select add #5.89
    41064 
    41065 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    41066 
    41067 > select add #5.96
    41068 
    41069 3705 atoms, 3723 bonds, 465 residues, 3 models selected 
    41070 
    41071 > select add #5.97
    41072 
    41073 4940 atoms, 4964 bonds, 620 residues, 4 models selected 
    41074 
    41075 > select add #5.98
    41076 
    41077 6175 atoms, 6205 bonds, 775 residues, 5 models selected 
    41078 
    41079 > select add #5.99
    41080 
    41081 7410 atoms, 7446 bonds, 930 residues, 6 models selected 
    41082 
    41083 > select add #5.127
    41084 
    41085 8602 atoms, 8664 bonds, 1079 residues, 7 models selected 
    41086 
    41087 > select add #5.128
    41088 
    41089 13705 atoms, 13860 bonds, 1 pseudobond, 1712 residues, 9 models selected 
    41090 
    41091 > select add #5.132
    41092 
    41093 18808 atoms, 19056 bonds, 2 pseudobonds, 2345 residues, 11 models selected 
    41094 
    41095 > select add #5.133
    41096 
    41097 20000 atoms, 20274 bonds, 2 pseudobonds, 2494 residues, 12 models selected 
    41098 
    41099 > select add #5.134
    41100 
    41101 25103 atoms, 25470 bonds, 3 pseudobonds, 3127 residues, 14 models selected 
    41102 
    41103 > select add #5.135
    41104 
    41105 26295 atoms, 26688 bonds, 3 pseudobonds, 3276 residues, 15 models selected 
    41106 
    41107 > select add #5.136
    41108 
    41109 31398 atoms, 31884 bonds, 4 pseudobonds, 3909 residues, 17 models selected 
    41110 
    41111 > select add #5.137
    41112 
    41113 36469 atoms, 37040 bonds, 4 pseudobonds, 4530 residues, 18 models selected 
    41114 
    41115 > select add #5.141
    41116 
    41117 41540 atoms, 42196 bonds, 4 pseudobonds, 5151 residues, 19 models selected 
    41118 
    41119 > select add #5.142
    41120 
    41121 46611 atoms, 47352 bonds, 4 pseudobonds, 5772 residues, 20 models selected 
    41122 
    41123 > save /Users/shoichi/Desktop/Resegment-Fixed/Part3/FlgY_PflAB_JMB.pdb
    41124 > selectedOnly true
    41125 
    41126 > open /Users/shoichi/Desktop/Resegment-Fixed/Part3/FlgY_PflAB_JMB.pdb
    41127 
    41128 Summary of feedback from opening /Users/shoichi/Desktop/Resegment-
    41129 Fixed/Part3/FlgY_PflAB_JMB.pdb 
    41130 --- 
    41131 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    41132 Start residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1
    41133 42 
    41134 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    41135 8 
    41136 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    41137 1 7 
    41138 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    41139 1 3 
    41140 491 messages similar to the above omitted 
    41141  
    41142 Chain information for FlgY_PflAB_JMB.pdb 
    41143 --- 
    41144 Chain | Description 
    41145 8.1/BN 8.2/BO 8.3/BV 8.4/BW 8.5/BX 8.6/BY | No description available 
    41146 8.7/d 8.10/j 8.12/l | No description available 
    41147 8.8/e 8.9/i 8.11/k 8.13/m | No description available 
    41148 8.14/n 8.15/r 8.16/s | No description available 
    41149  
    41150 
    41151 > select add #5
    41152 
    41153 70581 atoms, 71562 bonds, 4 pseudobonds, 8712 residues, 51 models selected 
    41154 
    41155 > hide #!5 models
    41156 
    41157 > select subtract #5
    41158 
    41159 Nothing selected 
    41160 
    41161 > show #!7 models
    41162 
    41163 > show #!3 models
    41164 
    41165 > hide #!3 models
    41166 
    41167 > show #!3 models
    41168 
    41169 > hide #!3 models
    41170 
    41171 > hide #!7 models
    41172 
    41173 > show #!7 models
    41174 
    41175 > select add #8.1
    41176 
    41177 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    41178 
    41179 > select subtract #8.1
    41180 
    41181 Nothing selected 
    41182 
    41183 > select add #8.16
    41184 
    41185 5071 atoms, 5156 bonds, 621 residues, 1 model selected 
    41186 
    41187 > select add #8.15
    41188 
    41189 10142 atoms, 10312 bonds, 1242 residues, 2 models selected 
    41190 
    41191 > select add #8.14
    41192 
    41193 15213 atoms, 15468 bonds, 1863 residues, 3 models selected 
    41194 
    41195 > select add #8.13
    41196 
    41197 20316 atoms, 20664 bonds, 1 pseudobond, 2496 residues, 5 models selected 
    41198 
    41199 > select subtract #8.13
    41200 
    41201 15213 atoms, 15468 bonds, 1863 residues, 3 models selected 
    41202 
    41203 > select add #8.12
    41204 
    41205 16405 atoms, 16686 bonds, 2012 residues, 4 models selected 
    41206 
    41207 > select add #8.11
    41208 
    41209 21508 atoms, 21882 bonds, 1 pseudobond, 2645 residues, 6 models selected 
    41210 
    41211 > select subtract #8.11
    41212 
    41213 16405 atoms, 16686 bonds, 2012 residues, 4 models selected 
    41214 
    41215 > select add #8.10
    41216 
    41217 17597 atoms, 17904 bonds, 2161 residues, 5 models selected 
    41218 
    41219 > select add #8.9
    41220 
    41221 22700 atoms, 23100 bonds, 1 pseudobond, 2794 residues, 7 models selected 
    41222 
    41223 > select subtract #8.9
    41224 
    41225 17597 atoms, 17904 bonds, 2161 residues, 5 models selected 
    41226 
    41227 > select add #8.8
    41228 
    41229 22700 atoms, 23100 bonds, 1 pseudobond, 2794 residues, 7 models selected 
    41230 
    41231 > select subtract #8.8
    41232 
    41233 17597 atoms, 17904 bonds, 2161 residues, 5 models selected 
    41234 
    41235 > select add #8.7
    41236 
    41237 18789 atoms, 19122 bonds, 2310 residues, 6 models selected 
    41238 
    41239 > color sel #ffea0eff models
    41240 
    41241 > color sel #ffea0eff
    41242 
    41243 > color sel #a7c5d2ff models
    41244 
    41245 > select clear
    41246 
    41247 > color sel #ffea0eff models
    41248 
    41249 > color sel #ca4949ff models
    41250 
    41251 > select add #8.7
    41252 
    41253 1192 atoms, 1218 bonds, 149 residues, 1 model selected 
    41254 
    41255 > select add #8.10
    41256 
    41257 2384 atoms, 2436 bonds, 298 residues, 2 models selected 
    41258 
    41259 > select add #8.12
    41260 
    41261 3576 atoms, 3654 bonds, 447 residues, 3 models selected 
    41262 
    41263 > select add #8.14
    41264 
    41265 8647 atoms, 8810 bonds, 1068 residues, 4 models selected 
    41266 
    41267 > select add #8.15
    41268 
    41269 13718 atoms, 13966 bonds, 1689 residues, 5 models selected 
    41270 
    41271 > select add #8.16
    41272 
    41273 18789 atoms, 19122 bonds, 2310 residues, 6 models selected 
    41274 
    41275 > color sel #ca4949ff models
    41276 
    41277 > select clear
    41278 
    41279 > select add #8.1
    41280 
    41281 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    41282 
    41283 > select subtract #8.1
    41284 
    41285 Nothing selected 
    41286 
    41287 > select add #8.8
    41288 
    41289 5103 atoms, 5196 bonds, 1 pseudobond, 633 residues, 2 models selected 
    41290 
    41291 > select add #8.11
    41292 
    41293 10206 atoms, 10392 bonds, 2 pseudobonds, 1266 residues, 4 models selected 
    41294 
    41295 > select add #8.9
    41296 
    41297 15309 atoms, 15588 bonds, 3 pseudobonds, 1899 residues, 6 models selected 
    41298 
    41299 > select add #8.13
    41300 
    41301 20412 atoms, 20784 bonds, 4 pseudobonds, 2532 residues, 8 models selected 
    41302 
    41303 > color sel magenta models
    41304 
    41305 > select clear
    41306 
    41307 > select add #8.1
    41308 
    41309 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    41310 
    41311 > select add #8.2
    41312 
    41313 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    41314 
    41315 > select subtract #8.2
    41316 
    41317 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    41318 
    41319 > select add #8.3
    41320 
    41321 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    41322 
    41323 > select subtract #8.3
    41324 
    41325 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    41326 
    41327 > select add #8.4
    41328 
    41329 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    41330 
    41331 > select subtract #8.4
    41332 
    41333 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    41334 
    41335 > select add #8.5
    41336 
    41337 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    41338 
    41339 > select add #8.4
    41340 
    41341 3705 atoms, 3723 bonds, 465 residues, 3 models selected 
    41342 
    41343 > select subtract #8.4
    41344 
    41345 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    41346 
    41347 > select add #8.3
    41348 
    41349 3705 atoms, 3723 bonds, 465 residues, 3 models selected 
    41350 
    41351 > color sel orchid models
    41352 
    41353 > select add #8.2
    41354 
    41355 4940 atoms, 4964 bonds, 620 residues, 4 models selected 
    41356 
    41357 > select clear
    41358 
    41359 > select add #8.2
    41360 
    41361 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    41362 
    41363 > select add #8.4
    41364 
    41365 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    41366 
    41367 > select add #8.6
    41368 
    41369 3705 atoms, 3723 bonds, 465 residues, 3 models selected 
    41370 
    41371 > color sel #bf370fff models
    41372 
    41373 > color sel #bf6f27ff models
    41374 
    41375 > select clear
    41376 
    41377 > color sel #e9cdeaff models
    41378 
    41379 > select add #8.2
    41380 
    41381 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    41382 
    41383 > select add #8.4
    41384 
    41385 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    41386 
    41387 > select add #8.6
    41388 
    41389 3705 atoms, 3723 bonds, 465 residues, 3 models selected 
    41390 
    41391 > color sel #e9cdeaff models
    41392 
    41393 > select clear
    41394 
    41395 > ui tool show "Segment Map"
    41396 
    41397 The cached device pixel ratio value was stale on window expose. Please file a
    41398 QTBUG which explains how to reproduce. 
    41399 
    41400 Segmenting PflABY.mrc gaussian, density threshold 0.001150 
    41401 Showing 30 region surfaces 
    41402 258 watershed regions, grouped to 30 regions 
    41403 Showing PflABY gaussian.seg - 30 regions, 30 surfaces 
    41404 
    41405 > select #9.13
    41406 
    41407 1 model selected 
    41408 
    41409 > select add #9.17
    41410 
    41411 2 models selected 
    41412 
    41413 > select add #9.10
    41414 
    41415 3 models selected 
    41416 
    41417 > select add #9.18
    41418 
    41419 4 models selected 
    41420 
    41421 > select add #9.23
    41422 
    41423 5 models selected 
    41424 
    41425 > select add #9.6
    41426 
    41427 6 models selected 
    41428 
    41429 > close #9
    41430 
    41431 Segmenting PflABY.mrc, density threshold 0.001150 
    41432 Only showing 60 of 625 regions. 
    41433 Showing 60 of 625 region surfaces 
    41434 16069 watershed regions, grouped to 625 regions 
    41435 Showing PflABY.seg - 625 regions, 60 surfaces 
    41436 
    41437 > select clear
    41438 
    41439 > select #9.18
    41440 
    41441 1 model selected 
    41442 
    41443 > select add #9.16
    41444 
    41445 2 models selected 
    41446 
    41447 > select add #9.11
    41448 
    41449 3 models selected 
    41450 
    41451 > select add #9.7
    41452 
    41453 4 models selected 
    41454 
    41455 > select add #9.22
    41456 
    41457 5 models selected 
    41458 
    41459 > select add #9.15
    41460 
    41461 6 models selected 
    41462 Grouped 6 regions 
    41463 
    41464 The cached device pixel ratio value was stale on window expose. Please file a
    41465 QTBUG which explains how to reproduce. 
    41466 
    41467 Opened PflABY_imasked as #10, grid size 200,200,200, pixel 2.14, shown at step
    41468 1, values float32 
    41469 
    41470 The cached device pixel ratio value was stale on window expose. Please file a
    41471 QTBUG which explains how to reproduce. 
    41472 
    41473 > save /Users/shoichi/Desktop/Resegment-Fixed/Part3/PflABY_out_side-spokes.mrc
    41474 > models #10
    41475 
    41476 > close #9
    41477 
    41478 > hide #!7 models
    41479 
    41480 > color #10 #42424233 models
    41481 
    41482 > color #10 #a9a9a94d models
    41483 
    41484 Segmenting PflABY.mrc, density threshold 0.001150 
    41485 Only showing 60 of 625 regions. 
    41486 Showing 60 of 625 region surfaces 
    41487 16069 watershed regions, grouped to 625 regions 
    41488 Showing PflABY.seg - 625 regions, 60 surfaces 
    41489 
    41490 > select #9.18
    41491 
    41492 1 model selected 
    41493 
    41494 > select add #9.16
    41495 
    41496 2 models selected 
    41497 
    41498 > select add #9.11
    41499 
    41500 3 models selected 
    41501 
    41502 > select add #9.15
    41503 
    41504 4 models selected 
    41505 
    41506 > select add #9.22
    41507 
    41508 5 models selected 
    41509 
    41510 > select add #9.7
    41511 
    41512 6 models selected 
    41513 
    41514 > select add #9.31
    41515 
    41516 7 models selected 
    41517 Drag select of 22750, 4474 of 7172 triangles, 22803, 51 of 5408 triangles,
    41518 22795, 2202 of 4036 triangles, 22888, 205 of 4104 triangles, 10
    41519 PflABY_out_side-spokes.mrc 
    41520 Grouped 11 regions 
    41521 
    41522 > select subtract #10
    41523 
    41524 1 model selected 
    41525 
    41526 > select clear
    41527 
    41528 > select #9.6
    41529 
    41530 1 model selected 
    41531 Ungrouped to 4 regions 
    41532 Ungrouped to 20 regions, but did not show all surfaces, see Options 
    41533 Ungrouped to 46 regions, but did not show all surfaces, see Options 
    41534 Ungrouped to 23 regions, but did not show their surfaces, see Options 
    41535 
    41536 > hide #!10 models
    41537 
    41538 Only showing 60 of 688 regions. 
    41539 Showing 60 of 688 region surfaces 
    41540 
    41541 > select clear
    41542 
    41543 > select #9.7
    41544 
    41545 1 model selected 
    41546 
    41547 > select add #9.38
    41548 
    41549 2 models selected 
    41550 
    41551 > select subtract #9.38
    41552 
    41553 1 model selected 
    41554 
    41555 > select add #9.54
    41556 
    41557 2 models selected 
    41558 
    41559 > select add #9.62
    41560 
    41561 3 models selected 
    41562 
    41563 > select add #9.38
    41564 
    41565 4 models selected 
    41566 Grouped 4 regions 
    41567 Opened PflABY_imasked as #11, grid size 200,200,200, pixel 2.14, shown at step
    41568 1, values float32 
    41569 
    41570 The cached device pixel ratio value was stale on window expose. Please file a
    41571 QTBUG which explains how to reproduce. 
    41572 
    41573 > save /Users/shoichi/Desktop/Resegment-Fixed/Part3/PflABY_out_side-spokes.mrc
    41574 > models #11
    41575 
    41576 > close #10
    41577 
    41578 > hide #!8 models
    41579 
    41580 > select add #9
    41581 
    41582 58 models selected 
    41583 
    41584 > select subtract #9
    41585 
    41586 Nothing selected 
    41587 
    41588 > hide #!9 models
    41589 
    41590 > color #11 #a9a9a94d models
    41591 
    41592 > show #!5 models
    41593 
    41594 > hide #!5 models
    41595 
    41596 > show #!8 models
    41597 
    41598 > surface dust #11 size 21.4
    41599 
    41600 Segmenting PflABY.mrc, density threshold 0.001150 
    41601 Only showing 60 of 625 regions. 
    41602 Showing 60 of 625 region surfaces 
    41603 16069 watershed regions, grouped to 625 regions 
    41604 Showing PflABY.seg - 625 regions, 60 surfaces 
    41605 
    41606 > hide #!11 models
    41607 
    41608 > hide #!8 models
    41609 
    41610 > show #!8 models
    41611 
    41612 > select #9.11
    41613 
    41614 1 model selected 
    41615 
    41616 > select add #9.16
    41617 
    41618 2 models selected 
    41619 
    41620 > select add #9.18
    41621 
    41622 3 models selected 
    41623 
    41624 > select add #9.31
    41625 
    41626 4 models selected 
    41627 Grouped 4 regions 
    41628 
    41629 > select clear
    41630 
    41631 > select #9.6
    41632 
    41633 1 model selected 
    41634 Ungrouped to 4 regions 
    41635 Ungrouped to 20 regions, but did not show all surfaces, see Options 
    41636 Ungrouped to 36 regions, but did not show all surfaces, see Options 
    41637 Ungrouped to 18 regions, but did not show their surfaces, see Options 
    41638 Only showing 60 of 686 regions. 
    41639 Showing 60 of 686 region surfaces 
    41640 
    41641 > select #9.11
    41642 
    41643 1 model selected 
    41644 
    41645 > select add #9.65
    41646 
    41647 2 models selected 
    41648 
    41649 > select add #9.62
    41650 
    41651 3 models selected 
    41652 
    41653 > select add #9.61
    41654 
    41655 4 models selected 
    41656 
    41657 > select add #9.71
    41658 
    41659 5 models selected 
    41660 
    41661 > select add #9.10
    41662 
    41663 6 models selected 
    41664 
    41665 > select #9.11
    41666 
    41667 1 model selected 
    41668 
    41669 > select #9.65
    41670 
    41671 1 model selected 
    41672 
    41673 > select add #9.62
    41674 
    41675 2 models selected 
    41676 
    41677 > select add #9.61
    41678 
    41679 3 models selected 
    41680 
    41681 > select add #9.11
    41682 
    41683 4 models selected 
    41684 Grouped 4 regions 
    41685 
    41686 > select #9.71
    41687 
    41688 1 model selected 
    41689 
    41690 > select #9.6
    41691 
    41692 1 model selected 
    41693 
    41694 > select #9.10
    41695 
    41696 1 model selected 
    41697 Ungrouped to 2 regions 
    41698 Ungrouped to 9 regions, but did not show all surfaces, see Options 
    41699 Ungrouped to 22 regions, but did not show all surfaces, see Options 
    41700 Ungrouped to 0 regions, but did not show their surfaces, see Options 
    41701 Only showing 60 of 710 regions. 
    41702 Showing 60 of 710 region surfaces 
    41703 
    41704 > select #9.10
    41705 
    41706 1 model selected 
    41707 
    41708 > select add #9.62
    41709 
    41710 2 models selected 
    41711 
    41712 > select add #9.59
    41713 
    41714 3 models selected 
    41715 
    41716 > select add #9.55
    41717 
    41718 4 models selected 
    41719 
    41720 > select #9.11
    41721 
    41722 1 model selected 
    41723 
    41724 > select #9.10
    41725 
    41726 1 model selected 
    41727 
    41728 > select add #9.55
    41729 
    41730 2 models selected 
    41731 
    41732 > select #9.11
    41733 
    41734 1 model selected 
    41735 
    41736 > select #9.10
    41737 
    41738 1 model selected 
    41739 
    41740 > select add #9.59
    41741 
    41742 2 models selected 
    41743 
    41744 > select add #9.62
    41745 
    41746 3 models selected 
    41747 Grouped 3 regions 
    41748 
    41749 > select add #9.11
    41750 
    41751 2 models selected 
    41752 
    41753 > select add #9.7
    41754 
    41755 3 models selected 
    41756 
    41757 > select add #9.22
    41758 
    41759 4 models selected 
    41760 
    41761 > select add #9.15
    41762 
    41763 5 models selected 
    41764 Grouped 5 regions 
    41765 Opened PflABY_imasked as #10, grid size 200,200,200, pixel 2.14, shown at step
    41766 1, values float32 
    41767 
    41768 The cached device pixel ratio value was stale on window expose. Please file a
    41769 QTBUG which explains how to reproduce. 
    41770 
    41771 > save /Users/shoichi/Desktop/Resegment-Fixed/Part3/PflABY_out_side-spokes.mrc
    41772 > models #11
    41773 
    41774 > hide #!9 models
    41775 
    41776 > select clear
    41777 
    41778 > show #!11 models
    41779 
    41780 > hide #!10 models
    41781 
    41782 > hide #!11 models
    41783 
    41784 > show #!10 models
    41785 
    41786 The cached device pixel ratio value was stale on window expose. Please file a
    41787 QTBUG which explains how to reproduce. 
    41788 
    41789 > save /Users/shoichi/Desktop/Resegment-Fixed/Part3/PflABY_out_side-spokes.mrc
    41790 > models #10
    41791 
    41792 > close #11
    41793 
    41794 > color #10 #a9a9a94d models
    41795 
    41796 > surface dust #10 size 21.4
    41797 
    41798 > vop gaussian #10 sd 2
    41799 
    41800 Opened PflABY_out_side-spokes.mrc gaussian as #11, grid size 200,200,200,
    41801 pixel 2.14, shown at step 1, values float32 
    41802 
    41803 > volume #11 level 0.00115
    41804 
    41805 > color #11 #a9a9a94d models
    41806 
    41807 > combine #8
    41808 
    41809 > ui tool show "Fit in Map"
    41810 
    41811 The cached device pixel ratio value was stale on window expose. Please file a
    41812 QTBUG which explains how to reproduce. 
    41813 
    41814 [Repeated 1 time(s)]
    41815 
    41816 > fitmap #12 inMap #11
    41817 
    41818 Fit molecule combination (#12) to map PflABY_out_side-spokes.mrc gaussian
    41819 (#11) using 46611 atoms 
    41820 average map value = 0.02939, steps = 60 
    41821 shifted from previous position = 1.24 
    41822 rotated from previous position = 1.72 degrees 
    41823 atoms outside contour = 7665, contour level = 0.00115 
    41824  
    41825 Position of combination (#12) relative to PflABY_out_side-spokes.mrc gaussian
    41826 (#11) coordinates: 
    41827 Matrix rotation and translation 
    41828 0.99958992 0.01868787 -0.02169684 1.39946613 
    41829 -0.01887900 0.99978446 -0.00863789 5.21627993 
    41830 0.02153074 0.00904396 0.99972728 -6.69400298 
    41831 Axis 0.29500325 -0.72120711 -0.62676422 
    41832 Axis point 286.86842756 0.00000000 47.57096221 
    41833 Rotation angle (degrees) 1.71734906 
    41834 Shift along axis 0.84639044 
    41835  
    41836 
    41837 > hide #!8 models
    41838 
    41839 > view orient
    41840 
    41841 Drag select of 114 residues 
    41842 
    41843 > hide sel cartoons
    41844 
    41845 > select clear
    41846 
    41847 > ui tool show "Map Eraser"
    41848 
    41849 > volume erase #11 center 365.25,312.43,309.2 radius 54.908
    41850 
    41851 > volume erase #11 center 379.53,297.75,271.6 radius 54.908
    41852 
    41853 > view orient
    41854 
    41855 > hide #13 models
    41856 
    41857 > save /Users/shoichi/Desktop/Resegment-Fixed/Part3/Fitting_PflABY-
    41858 > JMB_07112025.cxs includeMaps true
    41859 
    41860 > select ~sel & ##selected
    41861 
    41862 Nothing selected 
    41863 
    41864 > select ~sel & ##selected
    41865 
    41866 Nothing selected 
    41867 
    41868 > select ~sel & ##selected
    41869 
    41870 Nothing selected 
    41871 
    41872 > select ~sel & ##selected
    41873 
    41874 Nothing selected 
    41875 
    41876 > select ~sel & ##selected
    41877 
    41878 Nothing selected 
    41879 
    41880 > save /Users/shoichi/Desktop/Fig2-G_07112025.png supersample 2
    41881 > transparentBackground true
    41882 
    41883 > color #11 #a9a9a999 models
    41884 
    41885 > save /Users/shoichi/Desktop/Fig2-G_07112025.png supersample 2
    41886 > transparentBackground true
    41887 
    41888 > color #11 darkgrey models
    41889 
    41890 > color #11 #929292ff models
    41891 
    41892 > color #11 darkgrey models
    41893 
    41894 > color #11 #919191ff models
    41895 
    41896 > color #11 #91919100 models
    41897 
    41898 > color #11 #91919199 models
    41899 
    41900 > color #11 #91919180 models
    41901 
    41902 > save /Users/shoichi/Desktop/Fig2-G_07112025.png supersample 2
    41903 > transparentBackground true
    41904 
    41905 > color #11 silver models
    41906 
    41907 > color #11 darkgrey models
    41908 
    41909 > color #11 silver models
    41910 
    41911 > color #11 darkgrey models
    41912 
    41913 > hide #!11 models
    41914 
    41915 > show #!11 models
    41916 
    41917 > color #11 #929292ff models
    41918 
    41919 > color #11 silver models
    41920 
    41921 > color #11 #c0c0c080 models
    41922 
    41923 > save /Users/shoichi/Desktop/Fig2-G_07112025.png supersample 2
    41924 > transparentBackground true
    41925 
    41926 > lighting soft
    41927 
    41928 > graphics silhouettes true
    41929 
    41930 > graphics silhouettes false
    41931 
    41932 > graphics silhouettes true
    41933 
    41934 > set bgColor white
    41935 
    41936 > graphics silhouettes false
    41937 
    41938 > graphics silhouettes true
    41939 
    41940 > set bgColor black
    41941 
    41942 > save /Users/shoichi/Desktop/Fig2-G_07112025.png supersample 2
    41943 > transparentBackground true
    41944 
    41945 > ui tool show "Segment Map"
    41946 
    41947 Segmenting PflABY.mrc, density threshold 0.001150 
    41948 Showing 625 region surfaces 
    41949 16069 watershed regions, grouped to 625 regions 
    41950 Showing PflABY.seg - 625 regions, 625 surfaces 
    41951 
    41952 > hide #!12 models
    41953 
    41954 > hide #!11 models
    41955 
    41956 > show #!12 models
    41957 
    41958 Drag select of 22931, 296 of 5252 triangles, 22828, 1098 of 4036 triangles,
    41959 22857, 3625 of 4104 triangles, 22887, 156 of 3972 triangles, 22885, 202 of
    41960 3876 triangles, 22897, 1330 of 3876 triangles, 22947, 882 of 3604 triangles,
    41961 22972, 2658 of 3596 triangles, 22790, 1600 of 3652 triangles, 22869, 112 of
    41962 3448 triangles, 22881, 927 of 3464 triangles, 22874, 2551 of 3560 triangles,
    41963 22763, 792 of 3428 triangles, 22909, 1334 of 3244 triangles, 22039, 2125 of
    41964 3168 triangles, 23021, 1998 of 3032 triangles, 22940, 1884 of 2876 triangles,
    41965 22823, 1470 of 2860 triangles, 22939, 1917 of 2884 triangles, 22755, 2707 of
    41966 2760 triangles, 22945, 2552 of 2568 triangles, 23032, 537 of 2484 triangles,
    41967 22787, 1681 of 2532 triangles, 22405, 1437 of 2432 triangles, 22918, 1571 of
    41968 2324 triangles, 22845, 980 of 2252 triangles, 22903, 2427 of 2460 triangles,
    41969 22760, 1215 of 2276 triangles, 22917, 703 of 2216 triangles, 22212, 88 of 1972
    41970 triangles, 22781, 1134 of 2180 triangles, 22772, 1526 of 2032 triangles,
    41971 22853, 600 of 2024 triangles, 22911, 776 of 1888 triangles, 22834, 1503 of
    41972 1988 triangles, 22839, 1216 of 2048 triangles, 22746, 1121 of 1948 triangles,
    41973 22770, 1220 of 1960 triangles, 23042, 1697 of 1840 triangles, 23004, 956 of
    41974 1760 triangles, 22352, 390 of 1696 triangles, 22950, 1568 of 1700 triangles,
    41975 22865, 1156 of 1612 triangles, 22371, 22809, 1276 of 1656 triangles, 22305,
    41976 308 of 1612 triangles, 22404, 1244 of 1596 triangles, 22475, 328 of 1584
    41977 triangles, 22377, 259 of 1496 triangles, 22819, 442 of 1540 triangles, 22989,
    41978 1113 of 1408 triangles, 22930, 344 of 1308 triangles, 20627, 971 of 1288
    41979 triangles, 22756, 661 of 1292 triangles, 22916, 1112 of 1308 triangles, 22143,
    41980 22270, 1076 of 1264 triangles, 22987, 1022 of 1148 triangles, 22336, 638 of
    41981 1132 triangles, 20155, 748 of 1100 triangles, 22205, 772 of 1120 triangles,
    41982 22256, 99 of 916 triangles, 22502, 1047 of 1076 triangles, 22974, 23017,
    41983 23013, 359 of 984 triangles, 22831, 703 of 1036 triangles, 22360, 289 of 1048
    41984 triangles, 22242, 747 of 1024 triangles, 22139, 916 of 1000 triangles, 22415,
    41985 906 of 940 triangles, 22376, 911 of 1008 triangles, 22975, 340 of 952
    41986 triangles, 22365, 580 of 1004 triangles, 20287, 458 of 876 triangles, 20407,
    41987 135 of 944 triangles, 22421, 892 of 896 triangles, 22012, 22076, 796 of 800
    41988 triangles, 22148, 582 of 784 triangles, 22497, 625 of 804 triangles, 23025,
    41989 671 of 752 triangles, 22299, 648 of 740 triangles, 22574, 646 of 716
    41990 triangles, 22264, 348 of 772 triangles, 22899, 688 of 788 triangles, 22866, 48
    41991 of 692 triangles, 22797, 76 of 720 triangles, 22358, 499 of 696 triangles,
    41992 22355, 544 of 604 triangles, 22604, 22921, 120 of 600 triangles, 22610, 344 of
    41993 572 triangles, 22821, 163 of 540 triangles, 20518, 92 of 516 triangles, 22380,
    41994 370 of 556 triangles, 22973, 103 of 508 triangles, 22952, 22936, 225 of 488
    41995 triangles, 22924, 20128, 424 of 576 triangles, 22554, 180 of 492 triangles,
    41996 22023, 452 of 500 triangles, 22926, 276 of 476 triangles, 22927, 285 of 468
    41997 triangles, 22583, 21088, 20775, 220 of 376 triangles, 22111, 242 of 412
    41998 triangles, 22598, 21569, 22370, 240 of 356 triangles, 22925, 272 of 412
    41999 triangles, 21820, 19 of 376 triangles, 22985, 188 of 304 triangles, 21382,
    42000 21319, 274 of 288 triangles, 22684, 212 of 268 triangles, 21463, 21143, 95 of
    42001 252 triangles, 22115, 22696, 246 of 296 triangles, 22695, 48 of 328 triangles,
    42002 22935, 22817, 66 of 332 triangles, 22996, 45 of 236 triangles, 21330, 214 of
    42003 244 triangles, 21060, 21576, 22764, 208 of 264 triangles, 22420, 48 of 196
    42004 triangles, 21426, 97 of 232 triangles, 21436, 22901, 21975, 17035, 21368,
    42005 22089, 145 of 184 triangles, 21412, 95 of 124 triangles, 17425, 22533, 21670,
    42006 48 of 76 triangles, 15290, 17 of 56 triangles, 15088, 15175, 15135 
    42007 Drag select of 23038, 20 of 20192 triangles, 23006, 21 of 18912 triangles,
    42008 22934, 12 of 21656 triangles, 22812, 38 of 21436 triangles, 22961, 158 of 7316
    42009 triangles, 22806, 8877 of 9572 triangles, 22908, 8245 of 9216 triangles,
    42010 22784, 4842 of 7612 triangles, 22846, 7261 of 7484 triangles, 22943, 4668 of
    42011 7512 triangles, 22894, 22833, 22915, 366 of 6596 triangles, 22877, 6105 of
    42012 6376 triangles, 22829, 22872, 22959, 4517 of 5836 triangles, 22835, 4188 of
    42013 5540 triangles, 22814, 3687 of 5408 triangles, 22758, 4653 of 4688 triangles,
    42014 22822, 22991, 4103 of 4336 triangles, 22795, 3948 of 4336 triangles, 22788,
    42015 397 of 4320 triangles, 22937, 22780, 22847, 256 of 3688 triangles, 22762,
    42016 22993, 22967, 3476 of 3484 triangles, 22802, 22838, 2558 of 3252 triangles,
    42017 22963, 22929, 1730 of 2932 triangles, 22761, 22891, 1835 of 3080 triangles,
    42018 22855, 22941, 2580 of 2832 triangles, 22836, 2281 of 2808 triangles, 22849,
    42019 1924 of 2748 triangles, 22882, 22954, 440 of 2752 triangles, 22786, 23030,
    42020 22852, 2428 of 2544 triangles, 23033, 22902, 22907, 22867, 22914, 1800 of 2264
    42021 triangles, 22906, 2083 of 2324 triangles, 22369, 1988 of 2184 triangles,
    42022 22810, 180 of 2268 triangles, 22913, 22444, 1899 of 2180 triangles, 22752,
    42023 1968 of 2116 triangles, 23028, 22759, 1962 of 2196 triangles, 23029, 22785,
    42024 22463, 1476 of 2080 triangles, 22841, 1698 of 2060 triangles, 22944, 22745,
    42025 1832 of 2148 triangles, 22896, 23007, 22870, 22843, 23041, 21998, 22830,
    42026 22783, 22983, 1109 of 1956 triangles, 22850, 22791, 22765, 252 of 1808
    42027 triangles, 22803, 223 of 1776 triangles, 22933, 1329 of 1720 triangles, 22152,
    42028 23024, 1588 of 1820 triangles, 22864, 22988, 22103, 22769, 22227, 22507, 1462
    42029 of 1688 triangles, 22808, 23022, 22271, 22000, 1256 of 1696 triangles, 22171,
    42030 22949, 22966, 22425, 95 of 1696 triangles, 22964, 22757, 1360 of 1652
    42031 triangles, 22285, 496 of 1588 triangles, 22825, 22969, 1241 of 1432 triangles,
    42032 22960, 22311, 988 of 1480 triangles, 22922, 23011, 22811, 157 of 1348
    42033 triangles, 22863, 22488, 22096, 22072, 1136 of 1308 triangles, 22416, 952 of
    42034 1196 triangles, 22851, 1030 of 1240 triangles, 22873, 22799, 823 of 1248
    42035 triangles, 22515, 22505, 22958, 1197 of 1228 triangles, 22805, 22842, 22773,
    42036 1043 of 1232 triangles, 22801, 22768, 684 of 1228 triangles, 22951, 22920,
    42037 22409, 22858, 592 of 1176 triangles, 22861, 22314, 982 of 1104 triangles,
    42038 22986, 22198, 22304, 28 of 1064 triangles, 22910, 22704, 22820, 23003, 22879,
    42039 22876, 22138, 22383, 22538, 22968, 22957, 22982, 22815, 22826, 22439, 423 of
    42040 944 triangles, 22257, 764 of 948 triangles, 23026, 22300, 48 of 956 triangles,
    42041 22321, 354 of 972 triangles, 22743, 23009, 22144, 22250, 904 of 932 triangles,
    42042 22021, 22419, 273 of 836 triangles, 22888, 22994, 834 of 848 triangles, 22942,
    42043 22268, 22307, 712 of 828 triangles, 22793, 467 of 748 triangles, 22450, 22890,
    42044 781 of 872 triangles, 23018, 22002, 22932, 668 of 788 triangles, 22688, 22776,
    42045 22429, 796 of 804 triangles, 22003, 20263, 552 of 760 triangles, 22748, 22411,
    42046 23016, 22273, 22775, 22127, 20222, 22749, 68 of 740 triangles, 22424, 605 of
    42047 624 triangles, 22619, 180 of 720 triangles, 22434, 22729, 22946, 48 of 640
    42048 triangles, 22251, 22117, 22522, 20800, 22473, 22576, 22234, 22551, 22566, 120
    42049 of 628 triangles, 22750, 21914, 472 of 544 triangles, 22390, 22953, 22807, 216
    42050 of 548 triangles, 22816, 23002, 23037, 440 of 488 triangles, 22612, 22129,
    42051 21565, 22904, 306 of 532 triangles, 22970, 23034, 22159, 22151, 22905, 22327,
    42052 482 of 500 triangles, 22995, 23040, 22550, 372 of 408 triangles, 22248, 420 of
    42053 440 triangles, 22086, 362 of 388 triangles, 22731, 22656, 22854, 22580, 20974,
    42054 198 of 392 triangles, 22052, 20787, 112 of 472 triangles, 22716, 22343, 22840,
    42055 21273, 23000, 184 of 372 triangles, 22319, 22584, 22796, 22255, 22073, 22406,
    42056 23023, 22616, 21502, 21399, 21819, 23039, 20689, 22771, 22223, 22782, 21009,
    42057 22956, 17931, 16276, 20549, 21634, 22014, 185 of 264 triangles, 22504, 22309,
    42058 22132, 16560, 20836, 104 of 232 triangles, 22333, 22978, 18469, 21490, 16479,
    42059 22252, 156 of 204 triangles, 21408, 20722, 21700, 19727, 76 of 144 triangles,
    42060 19683, 21458, 16311, 21015, 16950, 16925, 20934, 20131, 21259, 19372, 22125,
    42061 19687, 99 of 100 triangles, 20208, 121, 4185, 1281, 3041, 3467, 3834 
    42062 
    42063 > select clear
    42064 
    42065 Showing 625 region surfaces 
    42066 Drag select of 22931, 609 of 5252 triangles, 22828, 1644 of 4036 triangles,
    42067 22857, 2664 of 4104 triangles, 22887, 110 of 3972 triangles, 22885, 389 of
    42068 3876 triangles, 22897, 266 of 3876 triangles, 22947, 1109 of 3604 triangles,
    42069 22895, 30 of 3696 triangles, 22972, 1881 of 3596 triangles, 22790, 2029 of
    42070 3652 triangles, 22881, 431 of 3464 triangles, 22874, 1745 of 3560 triangles,
    42071 22763, 642 of 3428 triangles, 22909, 1140 of 3244 triangles, 22039, 2024 of
    42072 3168 triangles, 23021, 1907 of 3032 triangles, 22940, 1821 of 2876 triangles,
    42073 22976, 351 of 2916 triangles, 22823, 298 of 2860 triangles, 22939, 222 of 2884
    42074 triangles, 22755, 624 of 2760 triangles, 22945, 1106 of 2568 triangles, 23032,
    42075 1032 of 2484 triangles, 22787, 1488 of 2532 triangles, 22405, 1722 of 2432
    42076 triangles, 22918, 1590 of 2324 triangles, 22845, 620 of 2252 triangles, 22903,
    42077 951 of 2460 triangles, 22760, 1097 of 2276 triangles, 22917, 667 of 2216
    42078 triangles, 22781, 435 of 2180 triangles, 22772, 188 of 2032 triangles, 22853,
    42079 744 of 2024 triangles, 22911, 297 of 1888 triangles, 22834, 1754 of 1988
    42080 triangles, 22839, 344 of 2048 triangles, 22746, 388 of 1948 triangles, 22770,
    42081 1110 of 1960 triangles, 23042, 1168 of 1840 triangles, 23004, 919 of 1760
    42082 triangles, 22352, 511 of 1696 triangles, 22950, 1229 of 1700 triangles, 22865,
    42083 772 of 1612 triangles, 22371, 1216 of 1652 triangles, 22809, 957 of 1656
    42084 triangles, 22305, 45 of 1612 triangles, 22404, 801 of 1596 triangles, 22475,
    42085 960 of 1584 triangles, 22377, 290 of 1496 triangles, 22819, 60 of 1540
    42086 triangles, 22989, 472 of 1408 triangles, 22060, 37 of 1388 triangles, 22930,
    42087 408 of 1308 triangles, 20627, 899 of 1288 triangles, 22981, 433 of 1364
    42088 triangles, 22756, 44 of 1292 triangles, 22916, 658 of 1308 triangles, 22143,
    42089 1120 of 1356 triangles, 22270, 772 of 1264 triangles, 22987, 148 of 1148
    42090 triangles, 22336, 1056 of 1132 triangles, 20155, 284 of 1100 triangles, 22205,
    42091 744 of 1120 triangles, 22256, 228 of 916 triangles, 22502, 248 of 1076
    42092 triangles, 23013, 92 of 984 triangles, 22360, 186 of 1048 triangles, 22139,
    42093 990 of 1000 triangles, 22415, 542 of 940 triangles, 22365, 104 of 1004
    42094 triangles, 20407, 281 of 944 triangles, 22421, 22012, 768 of 920 triangles,
    42095 22076, 449 of 800 triangles, 22148, 128 of 784 triangles, 22497, 268 of 804
    42096 triangles, 23025, 669 of 752 triangles, 22299, 566 of 740 triangles, 22574,
    42097 22264, 445 of 772 triangles, 22797, 45 of 720 triangles, 22358, 652 of 696
    42098 triangles, 22604, 398 of 612 triangles, 22921, 168 of 600 triangles, 22821, 88
    42099 of 540 triangles, 20518, 176 of 516 triangles, 22380, 357 of 556 triangles,
    42100 20128, 426 of 576 triangles, 22927, 348 of 468 triangles, 22583, 122 of 412
    42101 triangles, 21569, 43 of 360 triangles, 22925, 136 of 412 triangles, 23010, 9
    42102 of 324 triangles, 21382, 231 of 368 triangles, 21319, 240 of 288 triangles,
    42103 22115, 148 of 288 triangles, 22696, 248 of 296 triangles, 22935, 49 of 244
    42104 triangles, 21576, 100 of 280 triangles, 22764, 84 of 264 triangles, 21436,
    42105 21368, 22089, 17425, 73 of 136 triangles, 22533 
    42106 
    42107 > select clear
    42108 
    42109 > select #9.20
    42110 
    42111 1 model selected 
    42112 
    42113 > select add #9.17
    42114 
    42115 2 models selected 
    42116 
    42117 > select add #9.12
    42118 
    42119 3 models selected 
    42120 
    42121 > select add #9.5
    42122 
    42123 4 models selected 
    42124 
    42125 > select add #9.14
    42126 
    42127 5 models selected 
    42128 
    42129 > select add #9.27
    42130 
    42131 6 models selected 
    42132 
    42133 > select add #9.30
    42134 
    42135 7 models selected 
    42136 
    42137 > select add #9.4
    42138 
    42139 8 models selected 
    42140 
    42141 > select add #9.24
    42142 
    42143 9 models selected 
    42144 Grouped 9 regions 
    42145 
    42146 > select #9.1
    42147 
    42148 1 model selected 
    42149 Grouped 1 regions 
    42150 Showing 617 region surfaces 
    42151 
    42152 > select #9.1
    42153 
    42154 1 model selected 
    42155 
    42156 > select add #9.4
    42157 
    42158 2 models selected 
    42159 Grouped 2 regions 
    42160 Opened PflABY_imasked as #13, grid size 200,200,200, pixel 2.14, shown at step
    42161 1, values float32 
    42162 Segmenting PflABY_imasked, density threshold 0.001150 
    42163 Showing 11 region surfaces 
    42164 506 watershed regions, grouped to 11 regions 
    42165 Showing PflABY_imasked.seg - 11 regions, 11 surfaces 
    42166 
    42167 > hide #!12 models
    42168 
    42169 > show #!8 models
    42170 
    42171 > hide #8.1 models
    42172 
    42173 > hide #8.2 models
    42174 
    42175 > hide #8.3 models
    42176 
    42177 > hide #8.4 models
    42178 
    42179 > hide #8.5 models
    42180 
    42181 > hide #8.6 models
    42182 
    42183 > hide #8.7 models
    42184 
    42185 > show #8.7 models
    42186 
    42187 > hide #8.7 models
    42188 
    42189 > hide #!8.8 models
    42190 
    42191 > hide #!8.9 models
    42192 
    42193 > hide #8.16 models
    42194 
    42195 > show #8.16 models
    42196 
    42197 > hide #8.15 models
    42198 
    42199 > hide #8.14 models
    42200 
    42201 > select #9.7
    42202 
    42203 1 model selected 
    42204 
    42205 > select add #9.6
    42206 
    42207 2 models selected 
    42208 
    42209 > select add #9.4
    42210 
    42211 3 models selected 
    42212 
    42213 > hide #!13 models
    42214 
    42215 > select add #9.3
    42216 
    42217 4 models selected 
    42218 Grouped 4 regions 
    42219 
    42220 > select clear
    42221 
    42222 > select #9.3
    42223 
    42224 1 model selected 
    42225 
    42226 > select #9.9
    42227 
    42228 1 model selected 
    42229 Ungrouped to 2 regions 
    42230 Ungrouped to 4 regions 
    42231 Ungrouped to 9 regions 
    42232 Ungrouped to 15 regions 
    42233 Ungrouped to 0 regions 
    42234 
    42235 > select #9.12
    42236 
    42237 1 model selected 
    42238 
    42239 > select #9.12
    42240 
    42241 1 model selected 
    42242 
    42243 > select add #9.32
    42244 
    42245 2 models selected 
    42246 
    42247 > select clear
    42248 
    42249 > select #9.12
    42250 
    42251 1 model selected 
    42252 
    42253 > select add #9.32
    42254 
    42255 2 models selected 
    42256 
    42257 > select add #9.27
    42258 
    42259 3 models selected 
    42260 
    42261 > select add #9.24
    42262 
    42263 4 models selected 
    42264 
    42265 > select add #9.17
    42266 
    42267 5 models selected 
    42268 
    42269 > select add #9.4
    42270 
    42271 6 models selected 
    42272 
    42273 > select add #9.26
    42274 
    42275 7 models selected 
    42276 
    42277 > select add #9.10
    42278 
    42279 8 models selected 
    42280 Grouped 8 regions 
    42281 Showing 24 region surfaces 
    42282 
    42283 > select add #9.3
    42284 
    42285 2 models selected 
    42286 Grouped 2 regions 
    42287 
    42288 > select #9.2
    42289 
    42290 1 model selected 
    42291 Ungrouped to 2 regions 
    42292 Ungrouped to 21 regions 
    42293 Ungrouped to 43 regions 
    42294 Ungrouped to 16 regions 
    42295 Ungrouped to 0 regions 
    42296 
    42297 > select #9.70
    42298 
    42299 1 model selected 
    42300 
    42301 > select add #9.4
    42302 
    42303 2 models selected 
    42304 
    42305 > select #9.70
    42306 
    42307 1 model selected 
    42308 
    42309 > select #9.4
    42310 
    42311 1 model selected 
    42312 
    42313 > select add #9.70
    42314 
    42315 2 models selected 
    42316 Grouped 2 regions 
    42317 
    42318 > select add #9.16
    42319 
    42320 2 models selected 
    42321 
    42322 > select add #9.63
    42323 
    42324 3 models selected 
    42325 
    42326 > select add #9.40
    42327 
    42328 4 models selected 
    42329 
    42330 > select add #9.26
    42331 
    42332 5 models selected 
    42333 
    42334 > select add #9.42
    42335 
    42336 6 models selected 
    42337 
    42338 > select add #9.67
    42339 
    42340 7 models selected 
    42341 
    42342 > select add #9.66
    42343 
    42344 8 models selected 
    42345 
    42346 > select subtract #9.67
    42347 
    42348 7 models selected 
    42349 Grouped 7 regions 
    42350 
    42351 > select clear
    42352 
    42353 > select #9.67
    42354 
    42355 1 model selected 
    42356 
    42357 > show #!13 models
    42358 
    42359 > hide #!13 models
    42360 
    42361 > show #!12 models
    42362 
    42363 > hide #!12 models
    42364 
    42365 > select #9.67
    42366 
    42367 1 model selected 
    42368 
    42369 > select add #9.4
    42370 
    42371 2 models selected 
    42372 
    42373 > select add #9.60
    42374 
    42375 3 models selected 
    42376 
    42377 > select add #9.62
    42378 
    42379 4 models selected 
    42380 
    42381 > select subtract #9.62
    42382 
    42383 3 models selected 
    42384 
    42385 > select add #9.62
    42386 
    42387 4 models selected 
    42388 
    42389 > select add #9.41
    42390 
    42391 5 models selected 
    42392 Grouped 5 regions 
    42393 Showing 73 region surfaces 
    42394 
    42395 > select add #9.3
    42396 
    42397 2 models selected 
    42398 Grouped 2 regions 
    42399 
    42400 > select clear
    42401 
    42402 > select #9.3
    42403 
    42404 1 model selected 
    42405 
    42406 > select clear
    42407 
    42408 > select #9.27
    42409 
    42410 1 model selected 
    42411 
    42412 > select add #9.14
    42413 
    42414 2 models selected 
    42415 
    42416 > select #9.14
    42417 
    42418 1 model selected 
    42419 
    42420 > select add #9.24
    42421 
    42422 2 models selected 
    42423 
    42424 > select add #9.86
    42425 
    42426 3 models selected 
    42427 Grouped 3 regions 
    42428 
    42429 > select add #9.85
    42430 
    42431 2 models selected 
    42432 
    42433 > select add #9.17
    42434 
    42435 3 models selected 
    42436 
    42437 > select add #9.88
    42438 
    42439 4 models selected 
    42440 
    42441 > select subtract #9.4
    42442 
    42443 3 models selected 
    42444 
    42445 > select clear
    42446 
    42447 > select #9.4
    42448 
    42449 1 model selected 
    42450 
    42451 > select add #9.17
    42452 
    42453 2 models selected 
    42454 
    42455 > select add #9.85
    42456 
    42457 3 models selected 
    42458 Grouped 3 regions 
    42459 
    42460 > select add #9.59
    42461 
    42462 2 models selected 
    42463 Grouped 2 regions 
    42464 
    42465 > select add #9.88
    42466 
    42467 2 models selected 
    42468 Grouped 2 regions 
    42469 Showing 66 region surfaces 
    42470 
    42471 > select add #9.3
    42472 
    42473 2 models selected 
    42474 Grouped 2 regions 
    42475 
    42476 > select clear
    42477 
    42478 > select #9.5
    42479 
    42480 1 model selected 
    42481 Grouped 1 regions 
    42482 
    42483 > select add #9.3
    42484 
    42485 2 models selected 
    42486 Grouped 2 regions 
    42487 
    42488 > select clear
    42489 
    42490 > select #9.1
    42491 
    42492 1 model selected 
    42493 
    42494 > select add #9.8
    42495 
    42496 2 models selected 
    42497 Ungrouped to 6 regions 
    42498 Ungrouped to 16 regions 
    42499 Ungrouped to 50 regions 
    42500 Ungrouped to 77 regions 
    42501 Ungrouped to 0 regions 
    42502 
    42503 > select add #9.46
    42504 
    42505 1 model selected 
    42506 
    42507 > select add #9.193
    42508 
    42509 2 models selected 
    42510 
    42511 > select add #9.195
    42512 
    42513 3 models selected 
    42514 
    42515 > select #9.46
    42516 
    42517 1 model selected 
    42518 
    42519 > select #9.193
    42520 
    42521 1 model selected 
    42522 
    42523 > select add #9.46
    42524 
    42525 2 models selected 
    42526 
    42527 > select add #9.195
    42528 
    42529 3 models selected 
    42530 
    42531 > select add #9.14
    42532 
    42533 4 models selected 
    42534 Grouped 4 regions 
    42535 Showing 171 region surfaces 
    42536 
    42537 > select add #9.3
    42538 
    42539 2 models selected 
    42540 Grouped 2 regions 
    42541 
    42542 > select #9.162
    42543 
    42544 1 model selected 
    42545 
    42546 > select add #9.150
    42547 
    42548 2 models selected 
    42549 
    42550 > select clear
    42551 
    42552 > select #9.68
    42553 
    42554 1 model selected 
    42555 
    42556 > select add #9.24
    42557 
    42558 2 models selected 
    42559 
    42560 > select add #9.88
    42561 
    42562 3 models selected 
    42563 
    42564 > select add #9.157
    42565 
    42566 4 models selected 
    42567 
    42568 > select add #9.62
    42569 
    42570 5 models selected 
    42571 
    42572 > select subtract #9.62
    42573 
    42574 4 models selected 
    42575 Grouped 4 regions 
    42576 Showing 167 region surfaces 
    42577 
    42578 > select add #9.3
    42579 
    42580 2 models selected 
    42581 Grouped 2 regions 
    42582 
    42583 > select clear
    42584 
    42585 > select #9.162
    42586 
    42587 1 model selected 
    42588 
    42589 > select add #9.150
    42590 
    42591 2 models selected 
    42592 Grouped 2 regions 
    42593 
    42594 > select #9.149
    42595 
    42596 1 model selected 
    42597 
    42598 > select add #9.143
    42599 
    42600 2 models selected 
    42601 
    42602 > select add #9.166
    42603 
    42604 3 models selected 
    42605 
    42606 > select add #9.66
    42607 
    42608 4 models selected 
    42609 
    42610 > select add #9.60
    42611 
    42612 5 models selected 
    42613 
    42614 > select add #9.5
    42615 
    42616 6 models selected 
    42617 Grouped 6 regions 
    42618 
    42619 > select add #9.160
    42620 
    42621 2 models selected 
    42622 
    42623 > select #9.160
    42624 
    42625 1 model selected 
    42626 
    42627 > select add #9.3
    42628 
    42629 2 models selected 
    42630 Grouped 2 regions 
    42631 
    42632 > select clear
    42633 
    42634 > select #9.62
    42635 
    42636 1 model selected 
    42637 
    42638 > select add #9.3
    42639 
    42640 2 models selected 
    42641 Grouped 2 regions 
    42642 
    42643 > select #9.144
    42644 
    42645 1 model selected 
    42646 
    42647 > select add #9.3
    42648 
    42649 2 models selected 
    42650 Grouped 2 regions 
    42651 
    42652 > select add #9.40
    42653 
    42654 2 models selected 
    42655 Grouped 2 regions 
    42656 
    42657 > select #9.182
    42658 
    42659 1 model selected 
    42660 
    42661 > select add #9.178
    42662 
    42663 2 models selected 
    42664 
    42665 > select add #9.110
    42666 
    42667 3 models selected 
    42668 
    42669 > select add #9.3
    42670 
    42671 4 models selected 
    42672 Grouped 4 regions 
    42673 
    42674 > select #9.104
    42675 
    42676 1 model selected 
    42677 
    42678 > select add #9.103
    42679 
    42680 2 models selected 
    42681 
    42682 > select add #9.106
    42683 
    42684 3 models selected 
    42685 
    42686 > select add #9.5
    42687 
    42688 4 models selected 
    42689 Grouped 4 regions 
    42690 
    42691 > select add #9.146
    42692 
    42693 2 models selected 
    42694 
    42695 > select add #9.147
    42696 
    42697 3 models selected 
    42698 
    42699 > select add #9.145
    42700 
    42701 4 models selected 
    42702 
    42703 > select add #9.105
    42704 
    42705 5 models selected 
    42706 
    42707 > select add #9.67
    42708 
    42709 6 models selected 
    42710 
    42711 > select add #9.127
    42712 
    42713 7 models selected 
    42714 
    42715 > select add #9.125
    42716 
    42717 8 models selected 
    42718 
    42719 > select add #9.102
    42720 
    42721 9 models selected 
    42722 
    42723 > select subtract #9.102
    42724 
    42725 8 models selected 
    42726 
    42727 > select add #9.142
    42728 
    42729 9 models selected 
    42730 
    42731 > select add #9.102
    42732 
    42733 10 models selected 
    42734 
    42735 > select add #9.3
    42736 
    42737 11 models selected 
    42738 
    42739 > select subtract #9.3
    42740 
    42741 10 models selected 
    42742 
    42743 > select add #9.100
    42744 
    42745 11 models selected 
    42746 
    42747 > select subtract #9.100
    42748 
    42749 10 models selected 
    42750 
    42751 > select subtract #9.102
    42752 
    42753 9 models selected 
    42754 Grouped 9 regions 
    42755 
    42756 > select #9.102
    42757 
    42758 1 model selected 
    42759 
    42760 > select add #9.100
    42761 
    42762 2 models selected 
    42763 
    42764 > select clear
    42765 
    42766 > select #9.3
    42767 
    42768 1 model selected 
    42769 
    42770 > select add #9.141
    42771 
    42772 2 models selected 
    42773 
    42774 > select add #9.192
    42775 
    42776 3 models selected 
    42777 
    42778 > select add #9.102
    42779 
    42780 4 models selected 
    42781 
    42782 > select add #9.48
    42783 
    42784 5 models selected 
    42785 
    42786 > select add #9.47
    42787 
    42788 6 models selected 
    42789 Grouped 6 regions 
    42790 
    42791 > select add #9.100
    42792 
    42793 2 models selected 
    42794 Grouped 2 regions 
    42795 Showing 136 region surfaces 
    42796 
    42797 > select #9.27
    42798 
    42799 1 model selected 
    42800 
    42801 > select add #9.77
    42802 
    42803 2 models selected 
    42804 
    42805 > select add #9.5
    42806 
    42807 3 models selected 
    42808 Grouped 3 regions 
    42809 
    42810 > select clear
    42811 
    42812 Showing 134 region surfaces 
    42813 
    42814 > select #9.3
    42815 
    42816 1 model selected 
    42817 Opened PflABY_imasked_imasked as #14, grid size 200,200,200, pixel 2.14, shown
    42818 at step 1, values float32 
    42819 
    42820 The cached device pixel ratio value was stale on window expose. Please file a
    42821 QTBUG which explains how to reproduce. 
    42822 
    42823 > save /Users/shoichi/Desktop/Resegment-Fixed/Part3/Single-Spoke-ring.mrc
    42824 > models #14
    42825 
    42826 > select add #9
    42827 
    42828 135 models selected 
    42829 
    42830 > select subtract #9
    42831 
    42832 Nothing selected 
    42833 
    42834 > hide #!9 models
    42835 
    42836 > show #!11 models
    42837 
    42838 > hide #!11 models
    42839 
    42840 > close #9-10
    42841 
    42842 > close #13
    42843 
    42844 > vop gaussian #14 sd 2
    42845 
    42846 Opened Single-Spoke-ring.mrc gaussian as #9, grid size 200,200,200, pixel
    42847 2.14, shown at step 1, values float32 
    42848 
    42849 > surface dust #9 size 50
    42850 
    42851 > show #!11 models
    42852 
    42853 > hide #!11 models
    42854 
    42855 > color #9 #c0c0c080 models
    42856 
    42857 > select add #8.10
    42858 
    42859 1192 atoms, 1218 bonds, 149 residues, 1 model selected 
    42860 
    42861 > select add #8.11
    42862 
    42863 6295 atoms, 6414 bonds, 1 pseudobond, 782 residues, 3 models selected 
    42864 
    42865 > select add #8.12
    42866 
    42867 7487 atoms, 7632 bonds, 1 pseudobond, 931 residues, 4 models selected 
    42868 
    42869 > select add #8.13
    42870 
    42871 12590 atoms, 12828 bonds, 2 pseudobonds, 1564 residues, 6 models selected 
    42872 
    42873 > select add #8.16
    42874 
    42875 17661 atoms, 17984 bonds, 2 pseudobonds, 2185 residues, 7 models selected 
    42876 
    42877 > select add #8.6
    42878 
    42879 18896 atoms, 19225 bonds, 2 pseudobonds, 2340 residues, 8 models selected 
    42880 
    42881 > select subtract #8.6
    42882 
    42883 17661 atoms, 17984 bonds, 2 pseudobonds, 2185 residues, 7 models selected 
    42884 
    42885 > show #8.6 models
    42886 
    42887 > show #8.5 models
    42888 
    42889 > select subtract #8.10
    42890 
    42891 16469 atoms, 16766 bonds, 2 pseudobonds, 2036 residues, 6 models selected 
    42892 
    42893 > select subtract #8.11
    42894 
    42895 11366 atoms, 11570 bonds, 1 pseudobond, 1403 residues, 4 models selected 
    42896 
    42897 > select subtract #8.12
    42898 
    42899 10174 atoms, 10352 bonds, 1 pseudobond, 1254 residues, 3 models selected 
    42900 
    42901 > select subtract #8.13
    42902 
    42903 5071 atoms, 5156 bonds, 621 residues, 1 model selected 
    42904 
    42905 > select subtract #8.16
    42906 
    42907 Nothing selected 
    42908 Drag select of 155 residues, 9 Single-Spoke-ring.mrc gaussian 
    42909 
    42910 > select subtract #9
    42911 
    42912 1186 atoms, 155 residues, 2 models selected 
    42913 
    42914 > select add #8.6/BY:79
    42915 
    42916 1194 atoms, 7 bonds, 156 residues, 2 models selected 
    42917 
    42918 > select add #8.6/BY:78
    42919 
    42920 1203 atoms, 15 bonds, 157 residues, 2 models selected 
    42921 
    42922 > select add #8.6/BY:77
    42923 
    42924 1212 atoms, 23 bonds, 158 residues, 2 models selected 
    42925 
    42926 > select add #8.6/BY:76
    42927 
    42928 1221 atoms, 31 bonds, 159 residues, 2 models selected 
    42929 
    42930 > select add #8.5/BX:76
    42931 
    42932 1230 atoms, 39 bonds, 160 residues, 2 models selected 
    42933 
    42934 > select add #8.5/BX:75
    42935 
    42936 1239 atoms, 47 bonds, 161 residues, 2 models selected 
    42937 
    42938 > hide sel cartoons
    42939 
    42940 > view orient
    42941 
    42942 > hide #!9 models
    42943 
    42944 > select add #8.6
    42945 
    42946 1859 atoms, 1257 bonds, 236 residues, 2 models selected 
    42947 
    42948 > select subtract #8.6
    42949 
    42950 624 atoms, 16 bonds, 81 residues, 1 model selected 
    42951 
    42952 > select add #8.5
    42953 
    42954 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    42955 
    42956 > select subtract #8.5
    42957 
    42958 Nothing selected 
    42959 Drag select of 2334 residues, 2 pseudobonds 
    42960 
    42961 The cached device pixel ratio value was stale on window expose. Please file a
    42962 QTBUG which explains how to reproduce. 
    42963 
    42964 > save /Users/shoichi/Desktop/Resegment-Fixed/Part3/For-
    42965 > Support_figures/Single-unit_Spokes-ring.pdb selectedOnly true
    42966 
    42967 > open /Users/shoichi/Desktop/Resegment-Fixed/Part3/For-
    42968 > Support_figures/Single-unit_Spokes-ring.pdb
    42969 
    42970 Chain information for Single-unit_Spokes-ring.pdb 
    42971 --- 
    42972 Chain | Description 
    42973 10.1/BX | No description available 
    42974 10.2/BY | No description available 
    42975 10.3/j 10.5/l | No description available 
    42976 10.4/k 10.6/m | No description available 
    42977 10.7/s | No description available 
    42978  
    42979 
    42980 > select clear
    42981 
    42982 > hide #!8 models
    42983 
    42984 > hide #10.1 models
    42985 
    42986 > show #10.1 models
    42987 
    42988 > show #8.1 models
    42989 
    42990 > hide #8.1 models
    42991 
    42992 > show #8.2 models
    42993 
    42994 > show #8.1 models
    42995 
    42996 > show #8.7 models
    42997 
    42998 > select add #8.7
    42999 
    43000 1192 atoms, 1218 bonds, 149 residues, 1 model selected 
    43001 
    43002 > select subtract #8.7
    43003 
    43004 Nothing selected 
    43005 
    43006 > select add #8.6
    43007 
    43008 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    43009 
    43010 > select add #8.5
    43011 
    43012 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    43013 
    43014 > show sel cartoons
    43015 
    43016 > select clear
    43017 
    43018 > select add #10.1
    43019 
    43020 611 atoms, 615 bonds, 74 residues, 1 model selected 
    43021 
    43022 > color sel orchid
    43023 
    43024 > select subtract #10.1
    43025 
    43026 Nothing selected 
    43027 
    43028 > select add #10.2
    43029 
    43030 620 atoms, 624 bonds, 75 residues, 1 model selected 
    43031 
    43032 > color sel #e9cdeaff
    43033 
    43034 > select clear
    43035 
    43036 > hide #8.1 models
    43037 
    43038 > hide #8.2 models
    43039 
    43040 > show #8.1 models
    43041 
    43042 > show #8.2 models
    43043 
    43044 > show #8.3 models
    43045 
    43046 > show #8.4 models
    43047 
    43048 > show #!8.8 models
    43049 
    43050 > show #!8.9 models
    43051 
    43052 > show #8.14 models
    43053 
    43054 > show #8.15 models
    43055 
    43056 > hide #!8 models
    43057 
    43058 > hide #10.3 models
    43059 
    43060 > show #10.3 models
    43061 
    43062 > hide #10.3 models
    43063 
    43064 > show #10.3 models
    43065 
    43066 > select add #10.3
    43067 
    43068 1192 atoms, 1218 bonds, 149 residues, 1 model selected 
    43069 
    43070 > hide #!10.4 models
    43071 
    43072 > show #!10.4 models
    43073 
    43074 > hide #10.5 models
    43075 
    43076 > show #10.5 models
    43077 
    43078 > select add #10.5
    43079 
    43080 2384 atoms, 2436 bonds, 298 residues, 2 models selected 
    43081 
    43082 > hide #!10.6 models
    43083 
    43084 > show #!10.6 models
    43085 
    43086 > hide #10.7 models
    43087 
    43088 > show #10.7 models
    43089 
    43090 > select add #10.7
    43091 
    43092 7455 atoms, 7592 bonds, 919 residues, 3 models selected 
    43093 
    43094 > color sel #ca4949ff models
    43095 
    43096 > select clear
    43097 
    43098 > select add #10.4
    43099 
    43100 5103 atoms, 5196 bonds, 1 pseudobond, 633 residues, 2 models selected 
    43101 
    43102 > select add #10.6
    43103 
    43104 10206 atoms, 10392 bonds, 2 pseudobonds, 1266 residues, 4 models selected 
    43105 
    43106 > color sel magenta models
    43107 
    43108 > select clear
    43109 
    43110 > combine 10
    43111 
    43112 Expected a keyword 
    43113 
    43114 > combine #10
    43115 
    43116 > hide #!10 models
    43117 
    43118 > hide #!13 models
    43119 
    43120 > show #!13 models
    43121 
    43122 > show #!9 models
    43123 
    43124 > ui tool show "Fit in Map"
    43125 
    43126 The cached device pixel ratio value was stale on window expose. Please file a
    43127 QTBUG which explains how to reproduce. 
    43128 
    43129 [Repeated 1 time(s)]
    43130 
    43131 > fitmap #13 inMap #9
    43132 
    43133 Fit molecule combination (#13) to map Single-Spoke-ring.mrc gaussian (#9)
    43134 using 18892 atoms 
    43135 average map value = 0.0339, steps = 60 
    43136 shifted from previous position = 1.78 
    43137 rotated from previous position = 1.69 degrees 
    43138 atoms outside contour = 1156, contour level = 0.0003869 
    43139  
    43140 Position of combination (#13) relative to Single-Spoke-ring.mrc gaussian (#9)
    43141 coordinates: 
    43142 Matrix rotation and translation 
    43143 0.99956660 0.01511691 -0.02526044 3.09823887 
    43144 -0.01511434 0.99988573 0.00029272 2.17927743 
    43145 0.02526197 0.00008920 0.99968086 -5.77931779 
    43146 Axis -0.00345672 -0.85810305 -0.51346588 
    43147 Axis point 208.19316381 0.00000000 119.22852819 
    43148 Rotation angle (degrees) 1.68694142 
    43149 Shift along axis 1.08672813 
    43150  
    43151 
    43152 > fitmap #13 inMap #9
    43153 
    43154 Fit molecule combination (#13) to map Single-Spoke-ring.mrc gaussian (#9)
    43155 using 18892 atoms 
    43156 average map value = 0.0339, steps = 44 
    43157 shifted from previous position = 0.00686 
    43158 rotated from previous position = 0.0119 degrees 
    43159 atoms outside contour = 1154, contour level = 0.0003869 
    43160  
    43161 Position of combination (#13) relative to Single-Spoke-ring.mrc gaussian (#9)
    43162 coordinates: 
    43163 Matrix rotation and translation 
    43164 0.99956331 0.01532254 -0.02526676 3.05663171 
    43165 -0.01531905 0.99988260 0.00033191 2.21688085 
    43166 0.02526888 0.00005530 0.99968069 -5.77385238 
    43167 Axis -0.00468041 -0.85508399 -0.51846839 
    43168 Axis point 207.74836454 0.00000000 117.58460531 
    43169 Rotation angle (degrees) 1.69334263 
    43170 Shift along axis 1.08363436 
    43171  
    43172 Opened combination map 5 as #15, grid size 173,162,66, pixel 1.67, shown at
    43173 level 0.0975, step 1, values float32 
    43174 
    43175 > fitmap #13 inMap #9 resolution 5 metric correlation
    43176 
    43177 Fit map combination map 5 in map Single-Spoke-ring.mrc gaussian using 71823
    43178 points 
    43179 correlation = 0.7843, correlation about mean = 0.1189, overlap = 868.8 
    43180 steps = 48, shift = 0.288, angle = 0.168 degrees 
    43181  
    43182 Position of combination map 5 (#15) relative to Single-Spoke-ring.mrc gaussian
    43183 (#9) coordinates: 
    43184 Matrix rotation and translation 
    43185 0.99961902 0.01382237 -0.02389061 2.89655351 
    43186 -0.01376884 0.99990232 0.00240390 1.26702597 
    43187 0.02392150 -0.00207404 0.99971169 -4.75618228 
    43188 Axis -0.08085330 -0.86329261 -0.49818533 
    43189 Axis point 178.60491525 0.00000000 121.91874732 
    43190 Rotation angle (degrees) 1.58682134 
    43191 Shift along axis 1.04145014 
    43192  
    43193 Average map value = 0.03389 for 18892 atoms, 1131 outside contour 
    43194 
    43195 > hide #!9 models
    43196 
    43197 > show #!15 models
    43198 
    43199 > hide #!15 models
    43200 
    43201 > show #!9 models
    43202 
    43203 > close #15
    43204 
    43205 Opened combination map 10 as #15, grid size 96,90,42, pixel 3.33, shown at
    43206 level 0.0635, step 1, values float32 
    43207 
    43208 > fitmap #13 inMap #9 resolution 10 metric correlation
    43209 
    43210 Fit map combination map 10 in map Single-Spoke-ring.mrc gaussian using 12829
    43211 points 
    43212 correlation = 0.8633, correlation about mean = 0.5048, overlap = 106.4 
    43213 steps = 60, shift = 0.0929, angle = 0.175 degrees 
    43214  
    43215 Position of combination map 10 (#15) relative to Single-Spoke-ring.mrc
    43216 gaussian (#9) coordinates: 
    43217 Matrix rotation and translation 
    43218 0.99967548 0.01451755 -0.02093243 2.06394488 
    43219 -0.01446526 0.99989187 0.00264722 1.42614829 
    43220 0.02096860 -0.00234357 0.99977739 -4.01679677 
    43221 Axis -0.09749199 -0.81850955 -0.56616025 
    43222 Axis point 168.17434649 0.00000000 100.21099695 
    43223 Rotation angle (degrees) 1.46669925 
    43224 Shift along axis 0.90561658 
    43225  
    43226 Average map value = 0.03388 for 18892 atoms, 1151 outside contour 
    43227 
    43228 > show #!15 models
    43229 
    43230 > hide #!9 models
    43231 
    43232 > show #!9 models
    43233 
    43234 > hide #!9 models
    43235 
    43236 > hide #!15 models
    43237 
    43238 > show #!9 models
    43239 
    43240 > save /Users/shoichi/Desktop/SupFigXa_07112025.png supersample 2
    43241 > transparentBackground true
    43242 
    43243 > save /Users/shoichi/Desktop/Resegment-Fixed/Part3/Fitting_PflABY-
    43244 > JMB_07112025.cxs includeMaps true
    43245 
    43246 > turn x 90
    43247 
    43248 > turn x -90
    43249 
    43250 [Repeated 1 time(s)]
    43251 
    43252 > turn x 90
    43253 
    43254 > turn x -30
    43255 
    43256 > turn x 30
    43257 
    43258 > turn x 60
    43259 
    43260 > turn x -60
    43261 
    43262 [Repeated 1 time(s)]
    43263 
    43264 > turn x 60
    43265 
    43266 > turn x -45
    43267 
    43268 > show #!1 models
    43269 
    43270 > hide #!1 models
    43271 
    43272 > save /Users/shoichi/Desktop/Resegment-Fixed/Part3/Fitting_PflABY-
    43273 > JMB_07112025.cxs includeMaps true
    43274 
    43275 ——— End of log from Fri Jul 11 12:46:52 2025 ———
    43276 
    43277 opened ChimeraX session 
    43278 
    43279 > show #!14 models
    43280 
    43281 > hide #!14 models
    43282 
    43283 > show #!12 models
    43284 
    43285 > hide #!13 models
    43286 
    43287 > hide #!12 models
    43288 
    43289 > show #!12 models
    43290 
    43291 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    43292 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    43293 > refinment/For-Chimera-PflAB/Resegment/Resegment-Fixed/MS-ring.mrc"
    43294 
    43295 Opened MS-ring.mrc as #16, grid size 200,200,200, pixel 2.14, shown at level
    43296 0.00124, step 1, values float32 
    43297 
    43298 > hide #!16 models
    43299 
    43300 > show #!16 models
    43301 
    43302 > hide #!9 models
    43303 
    43304 > show #!9 models
    43305 
    43306 > show #!7 models
    43307 
    43308 > hide #!7 models
    43309 
    43310 > show #!11 models
    43311 
    43312 > volume gaussian #16 sDev 2
    43313 
    43314 Opened MS-ring.mrc gaussian as #17, grid size 200,200,200, pixel 2.14, shown
    43315 at step 1, values float32 
    43316 
    43317 > close #17
    43318 
    43319 > volume gaussian #16 sDev 4
    43320 
    43321 Opened MS-ring.mrc gaussian as #17, grid size 200,200,200, pixel 2.14, shown
    43322 at step 1, values float32 
    43323 
    43324 > close #17
    43325 
    43326 > volume gaussian #16 sDev 3
    43327 
    43328 Opened MS-ring.mrc gaussian as #17, grid size 200,200,200, pixel 2.14, shown
    43329 at step 1, values float32 
    43330 
    43331 > color #17 #c0c0c080 models
    43332 
    43333 > view orient
    43334 
    43335 > save /Users/shoichi/Desktop/3XFlgY_PflAB_07112025.png supersample 2
    43336 > transparentBackground true
    43337 
    43338 > hide #!9 models
    43339 
    43340 > show #!9 models
    43341 
    43342 > hide #!9 models
    43343 
    43344 > show #!9 models
    43345 
    43346 > hide #!9 models
    43347 
    43348 > surface dust #11 size 21.4
    43349 
    43350 > surface dust #17 size 21.4
    43351 
    43352 > save /Users/shoichi/Desktop/3XFlgY_PflAB_07112025.png supersample 2
    43353 > transparentBackground true
    43354 
    43355 > hide #!11 models
    43356 
    43357 > hide #!12 models
    43358 
    43359 > show #!12 models
    43360 
    43361 > show #!13 models
    43362 
    43363 > hide #!13 models
    43364 
    43365 > show #!13 models
    43366 
    43367 > hide #!13 models
    43368 
    43369 > combine #12
    43370 
    43371 > hide #!12 models
    43372 
    43373 > split #18
    43374 
    43375 Split copy of combination (#18) into 16 models 
    43376 Chain information for copy of combination BN #18.1 
    43377 --- 
    43378 Chain | Description 
    43379 BN | No description available 
    43380  
    43381 Chain information for copy of combination BO #18.2 
    43382 --- 
    43383 Chain | Description 
    43384 BO | No description available 
    43385  
    43386 Chain information for copy of combination BV #18.3 
    43387 --- 
    43388 Chain | Description 
    43389 BV | No description available 
    43390  
    43391 Chain information for copy of combination BW #18.4 
    43392 --- 
    43393 Chain | Description 
    43394 BW | No description available 
    43395  
    43396 Chain information for copy of combination BX #18.5 
    43397 --- 
    43398 Chain | Description 
    43399 BX | No description available 
    43400  
    43401 Chain information for copy of combination BY #18.6 
    43402 --- 
    43403 Chain | Description 
    43404 BY | No description available 
    43405  
    43406 Chain information for copy of combination d #18.7 
    43407 --- 
    43408 Chain | Description 
    43409 d | No description available 
    43410  
    43411 Chain information for copy of combination e #18.8 
    43412 --- 
    43413 Chain | Description 
    43414 e | No description available 
    43415  
    43416 Chain information for copy of combination i #18.9 
    43417 --- 
    43418 Chain | Description 
    43419 i | No description available 
    43420  
    43421 Chain information for copy of combination j #18.10 
    43422 --- 
    43423 Chain | Description 
    43424 j | No description available 
    43425  
    43426 Chain information for copy of combination k #18.11 
    43427 --- 
    43428 Chain | Description 
    43429 k | No description available 
    43430  
    43431 Chain information for copy of combination l #18.12 
    43432 --- 
    43433 Chain | Description 
    43434 l | No description available 
    43435  
    43436 Chain information for copy of combination m #18.13 
    43437 --- 
    43438 Chain | Description 
    43439 m | No description available 
    43440  
    43441 Chain information for copy of combination n #18.14 
    43442 --- 
    43443 Chain | Description 
    43444 n | No description available 
    43445  
    43446 Chain information for copy of combination r #18.15 
    43447 --- 
    43448 Chain | Description 
    43449 r | No description available 
    43450  
    43451 Chain information for copy of combination s #18.16 
    43452 --- 
    43453 Chain | Description 
    43454 s | No description available 
    43455  
    43456 
    43457 > hide #!17 models
    43458 
    43459 > show #!9 models
    43460 
    43461 > hide #18.1 models
    43462 
    43463 > hide #18.2 models
    43464 
    43465 > hide #18.3 models
    43466 
    43467 > hide #18.4 models
    43468 
    43469 > hide #18.7 models
    43470 
    43471 > hide #!18.8 models
    43472 
    43473 > hide #!18.9 models
    43474 
    43475 > show #!18.9 models
    43476 
    43477 > hide #!18.9 models
    43478 
    43479 > hide #18.10 models
    43480 
    43481 > show #18.10 models
    43482 
    43483 > hide #18.12 models
    43484 
    43485 > show #18.12 models
    43486 
    43487 > hide #18.14 models
    43488 
    43489 > hide #18.15 models
    43490 
    43491 Drag select of 153 residues 
    43492 
    43493 > hide sel cartoons
    43494 
    43495 > select #18.6/BY:73
    43496 
    43497 7 atoms, 6 bonds, 1 residue, 1 model selected 
    43498 
    43499 > select subtract #18.6/BY:73
    43500 
    43501 Nothing selected 
    43502 
    43503 > select add #18.6/BY:74
    43504 
    43505 9 atoms, 8 bonds, 1 residue, 1 model selected 
    43506 
    43507 > select add #18.6/BY:76
    43508 
    43509 18 atoms, 16 bonds, 2 residues, 1 model selected 
    43510 
    43511 > select add #18.6/BY:77
    43512 
    43513 27 atoms, 24 bonds, 3 residues, 1 model selected 
    43514 
    43515 > select add #18.6/BY:78
    43516 
    43517 36 atoms, 32 bonds, 4 residues, 1 model selected 
    43518 
    43519 > select add #18.6/BY:80
    43520 
    43521 44 atoms, 39 bonds, 5 residues, 1 model selected 
    43522 
    43523 > select add #18.6/BY:79
    43524 
    43525 52 atoms, 46 bonds, 6 residues, 1 model selected 
    43526 
    43527 > select add #18.6/BY:81
    43528 
    43529 60 atoms, 53 bonds, 7 residues, 1 model selected 
    43530 
    43531 > select add #18.5/BX:75
    43532 
    43533 69 atoms, 61 bonds, 8 residues, 2 models selected 
    43534 
    43535 > select add #18.6/BY:75
    43536 
    43537 78 atoms, 69 bonds, 9 residues, 2 models selected 
    43538 
    43539 > select add #18.5/BX:76
    43540 
    43541 87 atoms, 77 bonds, 10 residues, 2 models selected 
    43542 
    43543 > select add #18.5/BX:74
    43544 
    43545 96 atoms, 85 bonds, 11 residues, 2 models selected 
    43546 
    43547 > select add #18.5/BX:73
    43548 
    43549 103 atoms, 91 bonds, 12 residues, 2 models selected 
    43550 
    43551 > select add #18.5/BX:72
    43552 
    43553 111 atoms, 98 bonds, 13 residues, 2 models selected 
    43554 
    43555 > hide sel cartoons
    43556 
    43557 > view orient
    43558 
    43559 > select up
    43560 
    43561 1592 atoms, 1602 bonds, 192 residues, 2 models selected 
    43562 
    43563 > select up
    43564 
    43565 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    43566 
    43567 > select down
    43568 
    43569 1592 atoms, 1602 bonds, 192 residues, 2 models selected 
    43570 
    43571 > select down
    43572 
    43573 111 atoms, 98 bonds, 13 residues, 2 models selected 
    43574 
    43575 > undo
    43576 
    43577 [Repeated 3 time(s)]
    43578 
    43579 > show #!12 models
    43580 
    43581 > hide #!12 models
    43582 
    43583 > show #!12 models
    43584 
    43585 > hide #!12 models
    43586 
    43587 > save /Users/shoichi/Desktop/1XFlgY_PflAB_07112025.png supersample 2
    43588 > transparentBackground true
    43589 
    43590 > hide #!18 models
    43591 
    43592 > select add #18
    43593 
    43594 46611 atoms, 47352 bonds, 4 pseudobonds, 5772 residues, 21 models selected 
    43595 
    43596 > hide #!9 models
    43597 
    43598 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    43599 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    43600 > refinment/For-Chimera-PflAB/Resegment/Part1/PflC.mrc"
    43601 
    43602 Opened PflC.mrc as #19, grid size 200,200,200, pixel 2.14, shown at level
    43603 0.0306, step 1, values float32 
    43604 
    43605 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    43606 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    43607 > refinment/For-Chimera-PflAB/Resegment/Part1/PflD.mrc"
    43608 
    43609 Opened PflD.mrc as #20, grid size 200,200,200, pixel 2.14, shown at level
    43610 0.00101, step 1, values float32 
    43611 
    43612 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    43613 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    43614 > refinment/For-Chimera-PflAB/Resegment/Part3/Cages2.mrc"
    43615 
    43616 Opened Cages2.mrc as #21, grid size 200,200,200, pixel 2.14, shown at level
    43617 0.00248, step 1, values float32 
    43618 
    43619 > volume #21 level 0.001871
    43620 
    43621 > volume #19 level 0.007524
    43622 
    43623 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    43624 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    43625 > refinment/For-Chimera-PflAB/Rev-CJFlgYPlfAB-msk-2.1A.mrc"
    43626 
    43627 Opened Rev-CJFlgYPlfAB-msk-2.1A.mrc as #22, grid size 200,200,200, pixel 2.14,
    43628 shown at level 0.047, step 1, values float32 
    43629 
    43630 > volume #22 level 0.00187
    43631 
    43632 > hide #!22 models
    43633 
    43634 > select subtract #18
    43635 
    43636 Nothing selected 
    43637 
    43638 > show #!11 models
    43639 
    43640 > show #!4 models
    43641 
    43642 > hide #!4 models
    43643 
    43644 > show #!5 models
    43645 
    43646 > show #5.63 models
    43647 
    43648 > hide #5.63 models
    43649 
    43650 > show #5.63 models
    43651 
    43652 > hide #5.63 models
    43653 
    43654 > show #5.146 models
    43655 
    43656 > hide #5.146 models
    43657 
    43658 > hide #!19 models
    43659 
    43660 > hide #!20 models
    43661 
    43662 > show #!20 models
    43663 
    43664 > hide #!20 models
    43665 
    43666 > hide #!21 models
    43667 
    43668 > show #5.149 models
    43669 
    43670 > hide #5.149 models
    43671 
    43672 > show #5.146 models
    43673 
    43674 > hide #5.146 models
    43675 
    43676 > show #5.39 models
    43677 
    43678 > hide #5.39 models
    43679 
    43680 > show #5.2 models
    43681 
    43682 > hide #5.2 models
    43683 
    43684 > show #!4 models
    43685 
    43686 > hide #!4 models
    43687 
    43688 > show #!3 models
    43689 
    43690 > hide #!3 models
    43691 
    43692 > show #!3 models
    43693 
    43694 > combine #3
    43695 
    43696 > hide #!5 models
    43697 
    43698 > split #23
    43699 
    43700 Split copy of combination (#23) into 149 models 
    43701 Chain information for copy of combination 0 #23.1 
    43702 --- 
    43703 Chain | Description 
    43704 0 | No description available 
    43705  
    43706 Chain information for copy of combination 1 #23.2 
    43707 --- 
    43708 Chain | Description 
    43709 1 | No description available 
    43710  
    43711 Chain information for copy of combination 2 #23.3 
    43712 --- 
    43713 Chain | Description 
    43714 2 | No description available 
    43715  
    43716 Chain information for copy of combination 3 #23.4 
    43717 --- 
    43718 Chain | Description 
    43719 3 | No description available 
    43720  
    43721 Chain information for copy of combination 4 #23.5 
    43722 --- 
    43723 Chain | Description 
    43724 4 | No description available 
    43725  
    43726 Chain information for copy of combination 5 #23.6 
    43727 --- 
    43728 Chain | Description 
    43729 5 | No description available 
    43730  
    43731 Chain information for copy of combination 6 #23.7 
    43732 --- 
    43733 Chain | Description 
    43734 6 | No description available 
    43735  
    43736 Chain information for copy of combination 7 #23.8 
    43737 --- 
    43738 Chain | Description 
    43739 7 | No description available 
    43740  
    43741 Chain information for copy of combination 8 #23.9 
    43742 --- 
    43743 Chain | Description 
    43744 8 | No description available 
    43745  
    43746 Chain information for copy of combination 9 #23.10 
    43747 --- 
    43748 Chain | Description 
    43749 9 | No description available 
    43750  
    43751 Chain information for copy of combination A #23.11 
    43752 --- 
    43753 Chain | Description 
    43754 A | No description available 
    43755  
    43756 Chain information for copy of combination A0 #23.12 
    43757 --- 
    43758 Chain | Description 
    43759 A0 | No description available 
    43760  
    43761 Chain information for copy of combination A1 #23.13 
    43762 --- 
    43763 Chain | Description 
    43764 A1 | No description available 
    43765  
    43766 Chain information for copy of combination A2 #23.14 
    43767 --- 
    43768 Chain | Description 
    43769 A2 | No description available 
    43770  
    43771 Chain information for copy of combination A3 #23.15 
    43772 --- 
    43773 Chain | Description 
    43774 A3 | No description available 
    43775  
    43776 Chain information for copy of combination A4 #23.16 
    43777 --- 
    43778 Chain | Description 
    43779 A4 | No description available 
    43780  
    43781 Chain information for copy of combination A5 #23.17 
    43782 --- 
    43783 Chain | Description 
    43784 A5 | No description available 
    43785  
    43786 Chain information for copy of combination A6 #23.18 
    43787 --- 
    43788 Chain | Description 
    43789 A6 | No description available 
    43790  
    43791 Chain information for copy of combination A7 #23.19 
    43792 --- 
    43793 Chain | Description 
    43794 A7 | No description available 
    43795  
    43796 Chain information for copy of combination A8 #23.20 
    43797 --- 
    43798 Chain | Description 
    43799 A8 | No description available 
    43800  
    43801 Chain information for copy of combination A9 #23.21 
    43802 --- 
    43803 Chain | Description 
    43804 A9 | No description available 
    43805  
    43806 Chain information for copy of combination AA #23.22 
    43807 --- 
    43808 Chain | Description 
    43809 AA | No description available 
    43810  
    43811 Chain information for copy of combination AB #23.23 
    43812 --- 
    43813 Chain | Description 
    43814 AB | No description available 
    43815  
    43816 Chain information for copy of combination AC #23.24 
    43817 --- 
    43818 Chain | Description 
    43819 AC | No description available 
    43820  
    43821 Chain information for copy of combination AD #23.25 
    43822 --- 
    43823 Chain | Description 
    43824 AD | No description available 
    43825  
    43826 Chain information for copy of combination AE #23.26 
    43827 --- 
    43828 Chain | Description 
    43829 AE | No description available 
    43830  
    43831 Chain information for copy of combination AF #23.27 
    43832 --- 
    43833 Chain | Description 
    43834 AF | No description available 
    43835  
    43836 Chain information for copy of combination AG #23.28 
    43837 --- 
    43838 Chain | Description 
    43839 AG | No description available 
    43840  
    43841 Chain information for copy of combination AH #23.29 
    43842 --- 
    43843 Chain | Description 
    43844 AH | No description available 
    43845  
    43846 Chain information for copy of combination AI #23.30 
    43847 --- 
    43848 Chain | Description 
    43849 AI | No description available 
    43850  
    43851 Chain information for copy of combination AJ #23.31 
    43852 --- 
    43853 Chain | Description 
    43854 AJ | No description available 
    43855  
    43856 Chain information for copy of combination AK #23.32 
    43857 --- 
    43858 Chain | Description 
    43859 AK | No description available 
    43860  
    43861 Chain information for copy of combination AL #23.33 
    43862 --- 
    43863 Chain | Description 
    43864 AL | No description available 
    43865  
    43866 Chain information for copy of combination AM #23.34 
    43867 --- 
    43868 Chain | Description 
    43869 AM | No description available 
    43870  
    43871 Chain information for copy of combination AN #23.35 
    43872 --- 
    43873 Chain | Description 
    43874 AN | No description available 
    43875  
    43876 Chain information for copy of combination AO #23.36 
    43877 --- 
    43878 Chain | Description 
    43879 AO | No description available 
    43880  
    43881 Chain information for copy of combination AP #23.37 
    43882 --- 
    43883 Chain | Description 
    43884 AP | No description available 
    43885  
    43886 Chain information for copy of combination AQ #23.38 
    43887 --- 
    43888 Chain | Description 
    43889 AQ | No description available 
    43890  
    43891 Chain information for copy of combination AR #23.39 
    43892 --- 
    43893 Chain | Description 
    43894 AR | No description available 
    43895  
    43896 Chain information for copy of combination AS #23.40 
    43897 --- 
    43898 Chain | Description 
    43899 AS | No description available 
    43900  
    43901 Chain information for copy of combination AT #23.41 
    43902 --- 
    43903 Chain | Description 
    43904 AT | No description available 
    43905  
    43906 Chain information for copy of combination AU #23.42 
    43907 --- 
    43908 Chain | Description 
    43909 AU | No description available 
    43910  
    43911 Chain information for copy of combination AV #23.43 
    43912 --- 
    43913 Chain | Description 
    43914 AV | No description available 
    43915  
    43916 Chain information for copy of combination AW #23.44 
    43917 --- 
    43918 Chain | Description 
    43919 AW | No description available 
    43920  
    43921 Chain information for copy of combination AX #23.45 
    43922 --- 
    43923 Chain | Description 
    43924 AX | No description available 
    43925  
    43926 Chain information for copy of combination AY #23.46 
    43927 --- 
    43928 Chain | Description 
    43929 AY | No description available 
    43930  
    43931 Chain information for copy of combination AZ #23.47 
    43932 --- 
    43933 Chain | Description 
    43934 AZ | No description available 
    43935  
    43936 Chain information for copy of combination Aa #23.48 
    43937 --- 
    43938 Chain | Description 
    43939 Aa | No description available 
    43940  
    43941 Chain information for copy of combination Ab #23.49 
    43942 --- 
    43943 Chain | Description 
    43944 Ab | No description available 
    43945  
    43946 Chain information for copy of combination Ac #23.50 
    43947 --- 
    43948 Chain | Description 
    43949 Ac | No description available 
    43950  
    43951 Chain information for copy of combination Ad #23.51 
    43952 --- 
    43953 Chain | Description 
    43954 Ad | No description available 
    43955  
    43956 Chain information for copy of combination Ae #23.52 
    43957 --- 
    43958 Chain | Description 
    43959 Ae | No description available 
    43960  
    43961 Chain information for copy of combination Af #23.53 
    43962 --- 
    43963 Chain | Description 
    43964 Af | No description available 
    43965  
    43966 Chain information for copy of combination Ag #23.54 
    43967 --- 
    43968 Chain | Description 
    43969 Ag | No description available 
    43970  
    43971 Chain information for copy of combination Ah #23.55 
    43972 --- 
    43973 Chain | Description 
    43974 Ah | No description available 
    43975  
    43976 Chain information for copy of combination Ai #23.56 
    43977 --- 
    43978 Chain | Description 
    43979 Ai | No description available 
    43980  
    43981 Chain information for copy of combination Aj #23.57 
    43982 --- 
    43983 Chain | Description 
    43984 Aj | No description available 
    43985  
    43986 Chain information for copy of combination Ak #23.58 
    43987 --- 
    43988 Chain | Description 
    43989 Ak | No description available 
    43990  
    43991 Chain information for copy of combination Al #23.59 
    43992 --- 
    43993 Chain | Description 
    43994 Al | No description available 
    43995  
    43996 Chain information for copy of combination Am #23.60 
    43997 --- 
    43998 Chain | Description 
    43999 Am | No description available 
    44000  
    44001 Chain information for copy of combination An #23.61 
    44002 --- 
    44003 Chain | Description 
    44004 An | No description available 
    44005  
    44006 Chain information for copy of combination Ao #23.62 
    44007 --- 
    44008 Chain | Description 
    44009 Ao | No description available 
    44010  
    44011 Chain information for copy of combination Ap #23.63 
    44012 --- 
    44013 Chain | Description 
    44014 Ap | No description available 
    44015  
    44016 Chain information for copy of combination Aq #23.64 
    44017 --- 
    44018 Chain | Description 
    44019 Aq | No description available 
    44020  
    44021 Chain information for copy of combination Ar #23.65 
    44022 --- 
    44023 Chain | Description 
    44024 Ar | No description available 
    44025  
    44026 Chain information for copy of combination As #23.66 
    44027 --- 
    44028 Chain | Description 
    44029 As | No description available 
    44030  
    44031 Chain information for copy of combination At #23.67 
    44032 --- 
    44033 Chain | Description 
    44034 At | No description available 
    44035  
    44036 Chain information for copy of combination Au #23.68 
    44037 --- 
    44038 Chain | Description 
    44039 Au | No description available 
    44040  
    44041 Chain information for copy of combination Av #23.69 
    44042 --- 
    44043 Chain | Description 
    44044 Av | No description available 
    44045  
    44046 Chain information for copy of combination Aw #23.70 
    44047 --- 
    44048 Chain | Description 
    44049 Aw | No description available 
    44050  
    44051 Chain information for copy of combination Ax #23.71 
    44052 --- 
    44053 Chain | Description 
    44054 Ax | No description available 
    44055  
    44056 Chain information for copy of combination Ay #23.72 
    44057 --- 
    44058 Chain | Description 
    44059 Ay | No description available 
    44060  
    44061 Chain information for copy of combination Az #23.73 
    44062 --- 
    44063 Chain | Description 
    44064 Az | No description available 
    44065  
    44066 Chain information for copy of combination B #23.74 
    44067 --- 
    44068 Chain | Description 
    44069 B | No description available 
    44070  
    44071 Chain information for copy of combination BA #23.75 
    44072 --- 
    44073 Chain | Description 
    44074 BA | No description available 
    44075  
    44076 Chain information for copy of combination BB #23.76 
    44077 --- 
    44078 Chain | Description 
    44079 BB | No description available 
    44080  
    44081 Chain information for copy of combination BC #23.77 
    44082 --- 
    44083 Chain | Description 
    44084 BC | No description available 
    44085  
    44086 Chain information for copy of combination BD #23.78 
    44087 --- 
    44088 Chain | Description 
    44089 BD | No description available 
    44090  
    44091 Chain information for copy of combination BE #23.79 
    44092 --- 
    44093 Chain | Description 
    44094 BE | No description available 
    44095  
    44096 Chain information for copy of combination BF #23.80 
    44097 --- 
    44098 Chain | Description 
    44099 BF | No description available 
    44100  
    44101 Chain information for copy of combination BG #23.81 
    44102 --- 
    44103 Chain | Description 
    44104 BG | No description available 
    44105  
    44106 Chain information for copy of combination BH #23.82 
    44107 --- 
    44108 Chain | Description 
    44109 BH | No description available 
    44110  
    44111 Chain information for copy of combination BI #23.83 
    44112 --- 
    44113 Chain | Description 
    44114 BI | No description available 
    44115  
    44116 Chain information for copy of combination BJ #23.84 
    44117 --- 
    44118 Chain | Description 
    44119 BJ | No description available 
    44120  
    44121 Chain information for copy of combination BK #23.85 
    44122 --- 
    44123 Chain | Description 
    44124 BK | No description available 
    44125  
    44126 Chain information for copy of combination BL #23.86 
    44127 --- 
    44128 Chain | Description 
    44129 BL | No description available 
    44130  
    44131 Chain information for copy of combination BM #23.87 
    44132 --- 
    44133 Chain | Description 
    44134 BM | No description available 
    44135  
    44136 Chain information for copy of combination BN #23.88 
    44137 --- 
    44138 Chain | Description 
    44139 BN | No description available 
    44140  
    44141 Chain information for copy of combination BO #23.89 
    44142 --- 
    44143 Chain | Description 
    44144 BO | No description available 
    44145  
    44146 Chain information for copy of combination BP #23.90 
    44147 --- 
    44148 Chain | Description 
    44149 BP | No description available 
    44150  
    44151 Chain information for copy of combination BQ #23.91 
    44152 --- 
    44153 Chain | Description 
    44154 BQ | No description available 
    44155  
    44156 Chain information for copy of combination BR #23.92 
    44157 --- 
    44158 Chain | Description 
    44159 BR | No description available 
    44160  
    44161 Chain information for copy of combination BS #23.93 
    44162 --- 
    44163 Chain | Description 
    44164 BS | No description available 
    44165  
    44166 Chain information for copy of combination BT #23.94 
    44167 --- 
    44168 Chain | Description 
    44169 BT | No description available 
    44170  
    44171 Chain information for copy of combination BU #23.95 
    44172 --- 
    44173 Chain | Description 
    44174 BU | No description available 
    44175  
    44176 Chain information for copy of combination BV #23.96 
    44177 --- 
    44178 Chain | Description 
    44179 BV | No description available 
    44180  
    44181 Chain information for copy of combination BW #23.97 
    44182 --- 
    44183 Chain | Description 
    44184 BW | No description available 
    44185  
    44186 Chain information for copy of combination BX #23.98 
    44187 --- 
    44188 Chain | Description 
    44189 BX | No description available 
    44190  
    44191 Chain information for copy of combination BY #23.99 
    44192 --- 
    44193 Chain | Description 
    44194 BY | No description available 
    44195  
    44196 Chain information for copy of combination C #23.100 
    44197 --- 
    44198 Chain | Description 
    44199 C | No description available 
    44200  
    44201 Chain information for copy of combination D #23.101 
    44202 --- 
    44203 Chain | Description 
    44204 D | No description available 
    44205  
    44206 Chain information for copy of combination E #23.102 
    44207 --- 
    44208 Chain | Description 
    44209 E | No description available 
    44210  
    44211 Chain information for copy of combination F #23.103 
    44212 --- 
    44213 Chain | Description 
    44214 F | No description available 
    44215  
    44216 Chain information for copy of combination G #23.104 
    44217 --- 
    44218 Chain | Description 
    44219 G | No description available 
    44220  
    44221 Chain information for copy of combination H #23.105 
    44222 --- 
    44223 Chain | Description 
    44224 H | No description available 
    44225  
    44226 Chain information for copy of combination I #23.106 
    44227 --- 
    44228 Chain | Description 
    44229 I | No description available 
    44230  
    44231 Chain information for copy of combination J #23.107 
    44232 --- 
    44233 Chain | Description 
    44234 J | No description available 
    44235  
    44236 Chain information for copy of combination K #23.108 
    44237 --- 
    44238 Chain | Description 
    44239 K | No description available 
    44240  
    44241 Chain information for copy of combination L #23.109 
    44242 --- 
    44243 Chain | Description 
    44244 L | No description available 
    44245  
    44246 Chain information for copy of combination M #23.110 
    44247 --- 
    44248 Chain | Description 
    44249 M | No description available 
    44250  
    44251 Chain information for copy of combination N #23.111 
    44252 --- 
    44253 Chain | Description 
    44254 N | No description available 
    44255  
    44256 Chain information for copy of combination O #23.112 
    44257 --- 
    44258 Chain | Description 
    44259 O | No description available 
    44260  
    44261 Chain information for copy of combination P #23.113 
    44262 --- 
    44263 Chain | Description 
    44264 P | No description available 
    44265  
    44266 Chain information for copy of combination Q #23.114 
    44267 --- 
    44268 Chain | Description 
    44269 Q | No description available 
    44270  
    44271 Chain information for copy of combination R #23.115 
    44272 --- 
    44273 Chain | Description 
    44274 R | No description available 
    44275  
    44276 Chain information for copy of combination S #23.116 
    44277 --- 
    44278 Chain | Description 
    44279 S | No description available 
    44280  
    44281 Chain information for copy of combination T #23.117 
    44282 --- 
    44283 Chain | Description 
    44284 T | No description available 
    44285  
    44286 Chain information for copy of combination U #23.118 
    44287 --- 
    44288 Chain | Description 
    44289 U | No description available 
    44290  
    44291 Chain information for copy of combination V #23.119 
    44292 --- 
    44293 Chain | Description 
    44294 V | No description available 
    44295  
    44296 Chain information for copy of combination W #23.120 
    44297 --- 
    44298 Chain | Description 
    44299 W | No description available 
    44300  
    44301 Chain information for copy of combination X #23.121 
    44302 --- 
    44303 Chain | Description 
    44304 X | No description available 
    44305  
    44306 Chain information for copy of combination Y #23.122 
    44307 --- 
    44308 Chain | Description 
    44309 Y | No description available 
    44310  
    44311 Chain information for copy of combination Z #23.123 
    44312 --- 
    44313 Chain | Description 
    44314 Z | No description available 
    44315  
    44316 Chain information for copy of combination a #23.124 
    44317 --- 
    44318 Chain | Description 
    44319 a | No description available 
    44320  
    44321 Chain information for copy of combination b #23.125 
    44322 --- 
    44323 Chain | Description 
    44324 b | No description available 
    44325  
    44326 Chain information for copy of combination c #23.126 
    44327 --- 
    44328 Chain | Description 
    44329 c | No description available 
    44330  
    44331 Chain information for copy of combination d #23.127 
    44332 --- 
    44333 Chain | Description 
    44334 d | No description available 
    44335  
    44336 Chain information for copy of combination e #23.128 
    44337 --- 
    44338 Chain | Description 
    44339 e | No description available 
    44340  
    44341 Chain information for copy of combination f #23.129 
    44342 --- 
    44343 Chain | Description 
    44344 f | No description available 
    44345  
    44346 Chain information for copy of combination g #23.130 
    44347 --- 
    44348 Chain | Description 
    44349 g | No description available 
    44350  
    44351 Chain information for copy of combination h #23.131 
    44352 --- 
    44353 Chain | Description 
    44354 h | No description available 
    44355  
    44356 Chain information for copy of combination i #23.132 
    44357 --- 
    44358 Chain | Description 
    44359 i | No description available 
    44360  
    44361 Chain information for copy of combination j #23.133 
    44362 --- 
    44363 Chain | Description 
    44364 j | No description available 
    44365  
    44366 Chain information for copy of combination k #23.134 
    44367 --- 
    44368 Chain | Description 
    44369 k | No description available 
    44370  
    44371 Chain information for copy of combination l #23.135 
    44372 --- 
    44373 Chain | Description 
    44374 l | No description available 
    44375  
    44376 Chain information for copy of combination m #23.136 
    44377 --- 
    44378 Chain | Description 
    44379 m | No description available 
    44380  
    44381 Chain information for copy of combination n #23.137 
    44382 --- 
    44383 Chain | Description 
    44384 n | No description available 
    44385  
    44386 Chain information for copy of combination o #23.138 
    44387 --- 
    44388 Chain | Description 
    44389 o | No description available 
    44390  
    44391 Chain information for copy of combination p #23.139 
    44392 --- 
    44393 Chain | Description 
    44394 p | No description available 
    44395  
    44396 Chain information for copy of combination q #23.140 
    44397 --- 
    44398 Chain | Description 
    44399 q | No description available 
    44400  
    44401 Chain information for copy of combination r #23.141 
    44402 --- 
    44403 Chain | Description 
    44404 r | No description available 
    44405  
    44406 Chain information for copy of combination s #23.142 
    44407 --- 
    44408 Chain | Description 
    44409 s | No description available 
    44410  
    44411 Chain information for copy of combination t #23.143 
    44412 --- 
    44413 Chain | Description 
    44414 t | No description available 
    44415  
    44416 Chain information for copy of combination u #23.144 
    44417 --- 
    44418 Chain | Description 
    44419 u | No description available 
    44420  
    44421 Chain information for copy of combination v #23.145 
    44422 --- 
    44423 Chain | Description 
    44424 v | No description available 
    44425  
    44426 Chain information for copy of combination w #23.146 
    44427 --- 
    44428 Chain | Description 
    44429 w | No description available 
    44430  
    44431 Chain information for copy of combination x #23.147 
    44432 --- 
    44433 Chain | Description 
    44434 x | No description available 
    44435  
    44436 Chain information for copy of combination y #23.148 
    44437 --- 
    44438 Chain | Description 
    44439 y | No description available 
    44440  
    44441 Chain information for copy of combination z #23.149 
    44442 --- 
    44443 Chain | Description 
    44444 z | No description available 
    44445  
    44446 
    44447 > hide #!11 models
    44448 
    44449 Drag select of 5684 residues 
    44450 
    44451 > hide #!23.11 models
    44452 
    44453 > show #!23.11 models
    44454 
    44455 > hide #!23.11 models
    44456 
    44457 > select add #23.11
    44458 
    44459 46803 atoms, 1562 bonds, 2 pseudobonds, 5841 residues, 28 models selected 
    44460 
    44461 > select subtract #23.11
    44462 
    44463 45261 atoms, 5652 residues, 26 models selected 
    44464 
    44465 > select add #23.11
    44466 
    44467 46803 atoms, 1562 bonds, 2 pseudobonds, 5841 residues, 28 models selected 
    44468 
    44469 > select subtract #23.11
    44470 
    44471 45261 atoms, 5652 residues, 26 models selected 
    44472 
    44473 > hide #23.15 models
    44474 
    44475 > hide #23.30 models
    44476 
    44477 > hide #23.53 models
    44478 
    44479 > hide #23.85 models
    44480 
    44481 > hide #!23.100 models
    44482 
    44483 > hide #!23.101 models
    44484 
    44485 > hide #23.102 models
    44486 
    44487 > hide #!23.103 models
    44488 
    44489 > hide #!23.104 models
    44490 
    44491 > hide #23.105 models
    44492 
    44493 > hide #!23.106 models
    44494 
    44495 > hide #!23.107 models
    44496 
    44497 > hide #23.108 models
    44498 
    44499 > hide #!23.109 models
    44500 
    44501 > hide #!23.110 models
    44502 
    44503 > hide #23.111 models
    44504 
    44505 > hide #!23.112 models
    44506 
    44507 > hide #!23.116 models
    44508 
    44509 > hide #23.117 models
    44510 
    44511 > hide #!23.118 models
    44512 
    44513 > hide #!23.119 models
    44514 
    44515 > hide #23.120 models
    44516 
    44517 > hide #!23.121 models
    44518 
    44519 > hide #23.145 models
    44520 
    44521 > select clear
    44522 
    44523 > hide #!23 models
    44524 
    44525 > show #!23 models
    44526 
    44527 > hide #!23 models
    44528 
    44529 > hide #!3 models
    44530 
    44531 > show #!23 models
    44532 
    44533 > show #!23.11 models
    44534 
    44535 > show #23.15 models
    44536 
    44537 > hide #23.15 models
    44538 
    44539 Drag select of 426 residues 
    44540 
    44541 > hide #23.2 models
    44542 
    44543 > hide #23.3 models
    44544 
    44545 > hide #23.4 models
    44546 
    44547 > hide #23.5 models
    44548 
    44549 > hide #23.6 models
    44550 
    44551 > hide #23.7 models
    44552 
    44553 > hide #23.8 models
    44554 
    44555 > hide #23.9 models
    44556 
    44557 > hide #23.23 models
    44558 
    44559 > hide #23.24 models
    44560 
    44561 > hide #23.25 models
    44562 
    44563 > hide #23.26 models
    44564 
    44565 > hide #23.27 models
    44566 
    44567 > hide #23.78 models
    44568 
    44569 > hide #23.79 models
    44570 
    44571 > hide #23.80 models
    44572 
    44573 > hide #23.81 models
    44574 
    44575 > hide #23.82 models
    44576 
    44577 > hide #23.83 models
    44578 
    44579 > hide #23.84 models
    44580 
    44581 > hide #23.86 models
    44582 
    44583 > hide #23.87 models
    44584 
    44585 > hide #23.146 models
    44586 
    44587 > hide #23.147 models
    44588 
    44589 > hide #23.148 models
    44590 
    44591 > hide #23.149 models
    44592 
    44593 Drag select of 48 residues 
    44594 
    44595 > hide #23.64 models
    44596 
    44597 > hide #23.65 models
    44598 
    44599 > hide #23.66 models
    44600 
    44601 > hide #23.67 models
    44602 
    44603 > hide #23.68 models
    44604 
    44605 > hide #23.69 models
    44606 
    44607 > hide #23.70 models
    44608 
    44609 > hide #23.71 models
    44610 
    44611 > hide #23.72 models
    44612 
    44613 > hide #23.73 models
    44614 
    44615 > hide #23.42 models
    44616 
    44617 > hide #23.43 models
    44618 
    44619 > hide #23.44 models
    44620 
    44621 > hide #23.45 models
    44622 
    44623 > hide #23.46 models
    44624 
    44625 Drag select of 49 residues 
    44626 
    44627 > hide #23.41 models
    44628 
    44629 > show #23.46 models
    44630 
    44631 > hide #23.46 models
    44632 
    44633 > hide #23.47 models
    44634 
    44635 > hide #23.48 models
    44636 
    44637 > hide #23.49 models
    44638 
    44639 > hide #23.50 models
    44640 
    44641 > hide #23.1 models
    44642 
    44643 > select clear
    44644 
    44645 Drag select of 16 residues 
    44646 
    44647 > hide #23.22 models
    44648 
    44649 > hide #23.10 models
    44650 
    44651 Drag select of 259 residues 
    44652 
    44653 > hide #23.12 models
    44654 
    44655 > hide #23.13 models
    44656 
    44657 > hide #23.14 models
    44658 
    44659 > hide #23.16 models
    44660 
    44661 > hide #23.17 models
    44662 
    44663 > hide #23.18 models
    44664 
    44665 > hide #23.19 models
    44666 
    44667 > hide #23.20 models
    44668 
    44669 > hide #23.21 models
    44670 
    44671 > hide #23.75 models
    44672 
    44673 > hide #23.76 models
    44674 
    44675 > hide #23.77 models
    44676 
    44677 Drag select of 156 residues 
    44678 
    44679 > hide #23.54 models
    44680 
    44681 > hide #23.55 models
    44682 
    44683 > hide #23.56 models
    44684 
    44685 > hide #23.57 models
    44686 
    44687 > hide #23.58 models
    44688 
    44689 > hide #23.59 models
    44690 
    44691 > hide #23.60 models
    44692 
    44693 > hide #23.61 models
    44694 
    44695 > hide #23.62 models
    44696 
    44697 > hide #23.63 models
    44698 
    44699 Drag select of 267 residues 
    44700 
    44701 > hide #23.31 models
    44702 
    44703 > hide #23.32 models
    44704 
    44705 > hide #23.33 models
    44706 
    44707 > hide #23.34 models
    44708 
    44709 > hide #23.35 models
    44710 
    44711 > hide #23.36 models
    44712 
    44713 > hide #23.37 models
    44714 
    44715 > hide #23.39 models
    44716 
    44717 > hide #23.38 models
    44718 
    44719 > hide #23.40 models
    44720 
    44721 Drag select of 7 residues 
    44722 
    44723 > select clear
    44724 
    44725 Drag select of 7 residues 
    44726 Drag select of 10 residues 
    44727 
    44728 > show #!23.116 models
    44729 
    44730 > show #23.117 models
    44731 
    44732 > show #!23.118 models
    44733 
    44734 > hide #!23.118 models
    44735 
    44736 > show #!23.118 models
    44737 
    44738 > show #!23.119 models
    44739 
    44740 > show #23.120 models
    44741 
    44742 > show #!23.121 models
    44743 
    44744 > show #23.145 models
    44745 
    44746 > hide #23.145 models
    44747 
    44748 > show #23.146 models
    44749 
    44750 > hide #23.146 models
    44751 
    44752 > show #23.149 models
    44753 
    44754 > hide #23.149 models
    44755 
    44756 > select clear
    44757 
    44758 Drag select of 284 residues 
    44759 
    44760 > show #23.75 models
    44761 
    44762 > hide #23.75 models
    44763 
    44764 > show #23.73 models
    44765 
    44766 > hide #23.73 models
    44767 
    44768 > show #23.73 models
    44769 
    44770 > hide #23.73 models
    44771 
    44772 > show #23.73 models
    44773 
    44774 > hide #23.73 models
    44775 
    44776 > show #23.72 models
    44777 
    44778 > hide #23.72 models
    44779 
    44780 > show #23.53 models
    44781 
    44782 > hide #23.53 models
    44783 
    44784 > show #23.54 models
    44785 
    44786 > hide #23.54 models
    44787 
    44788 > show #23.55 models
    44789 
    44790 > hide #23.55 models
    44791 
    44792 > show #23.57 models
    44793 
    44794 > show #23.3 models
    44795 
    44796 > hide #23.3 models
    44797 
    44798 > show #23.3 models
    44799 
    44800 > hide #23.3 models
    44801 
    44802 > select add #23
    44803 
    44804 224507 atoms, 227843 bonds, 42 pseudobonds, 26692 residues, 176 models
    44805 selected 
    44806 
    44807 > show sel &
    44808 > #23.28-29,51-52,57,74,88-99,114,117,120,127,129,131,133,135,137-144#!23.11,113,115-116,118-119,121-126,128,130,132,134,136
    44809 > cartoons
    44810 
    44811 [Repeated 1 time(s)]
    44812 
    44813 > show #23.1 models
    44814 
    44815 > show #23.2 models
    44816 
    44817 > show #23.3 models
    44818 
    44819 > show #23.4 models
    44820 
    44821 > show #23.5 models
    44822 
    44823 > select clear
    44824 
    44825 > show #23.6 models
    44826 
    44827 > show #23.7 models
    44828 
    44829 > show #23.8 models
    44830 
    44831 > show #23.9 models
    44832 
    44833 > show #23.10 models
    44834 
    44835 The cached device pixel ratio value was stale on window expose. Please file a
    44836 QTBUG which explains how to reproduce. 
    44837 
    44838 > hide #!23.11 models
    44839 
    44840 > show #!23.11 models
    44841 
    44842 > close #23.1-10
    44843 
    44844 > show #23.12 models
    44845 
    44846 > show #23.13 models
    44847 
    44848 > show #23.14 models
    44849 
    44850 > show #23.15 models
    44851 
    44852 > hide #23.15 models
    44853 
    44854 > hide #23.14 models
    44855 
    44856 > show #23.14 models
    44857 
    44858 > close #23
    44859 
    44860 > combine #3
    44861 
    44862 > split #23
    44863 
    44864 Split copy of combination (#23) into 149 models 
    44865 Chain information for copy of combination 0 #23.1 
    44866 --- 
    44867 Chain | Description 
    44868 0 | No description available 
    44869  
    44870 Chain information for copy of combination 1 #23.2 
    44871 --- 
    44872 Chain | Description 
    44873 1 | No description available 
    44874  
    44875 Chain information for copy of combination 2 #23.3 
    44876 --- 
    44877 Chain | Description 
    44878 2 | No description available 
    44879  
    44880 Chain information for copy of combination 3 #23.4 
    44881 --- 
    44882 Chain | Description 
    44883 3 | No description available 
    44884  
    44885 Chain information for copy of combination 4 #23.5 
    44886 --- 
    44887 Chain | Description 
    44888 4 | No description available 
    44889  
    44890 Chain information for copy of combination 5 #23.6 
    44891 --- 
    44892 Chain | Description 
    44893 5 | No description available 
    44894  
    44895 Chain information for copy of combination 6 #23.7 
    44896 --- 
    44897 Chain | Description 
    44898 6 | No description available 
    44899  
    44900 Chain information for copy of combination 7 #23.8 
    44901 --- 
    44902 Chain | Description 
    44903 7 | No description available 
    44904  
    44905 Chain information for copy of combination 8 #23.9 
    44906 --- 
    44907 Chain | Description 
    44908 8 | No description available 
    44909  
    44910 Chain information for copy of combination 9 #23.10 
    44911 --- 
    44912 Chain | Description 
    44913 9 | No description available 
    44914  
    44915 Chain information for copy of combination A #23.11 
    44916 --- 
    44917 Chain | Description 
    44918 A | No description available 
    44919  
    44920 Chain information for copy of combination A0 #23.12 
    44921 --- 
    44922 Chain | Description 
    44923 A0 | No description available 
    44924  
    44925 Chain information for copy of combination A1 #23.13 
    44926 --- 
    44927 Chain | Description 
    44928 A1 | No description available 
    44929  
    44930 Chain information for copy of combination A2 #23.14 
    44931 --- 
    44932 Chain | Description 
    44933 A2 | No description available 
    44934  
    44935 Chain information for copy of combination A3 #23.15 
    44936 --- 
    44937 Chain | Description 
    44938 A3 | No description available 
    44939  
    44940 Chain information for copy of combination A4 #23.16 
    44941 --- 
    44942 Chain | Description 
    44943 A4 | No description available 
    44944  
    44945 Chain information for copy of combination A5 #23.17 
    44946 --- 
    44947 Chain | Description 
    44948 A5 | No description available 
    44949  
    44950 Chain information for copy of combination A6 #23.18 
    44951 --- 
    44952 Chain | Description 
    44953 A6 | No description available 
    44954  
    44955 Chain information for copy of combination A7 #23.19 
    44956 --- 
    44957 Chain | Description 
    44958 A7 | No description available 
    44959  
    44960 Chain information for copy of combination A8 #23.20 
    44961 --- 
    44962 Chain | Description 
    44963 A8 | No description available 
    44964  
    44965 Chain information for copy of combination A9 #23.21 
    44966 --- 
    44967 Chain | Description 
    44968 A9 | No description available 
    44969  
    44970 Chain information for copy of combination AA #23.22 
    44971 --- 
    44972 Chain | Description 
    44973 AA | No description available 
    44974  
    44975 Chain information for copy of combination AB #23.23 
    44976 --- 
    44977 Chain | Description 
    44978 AB | No description available 
    44979  
    44980 Chain information for copy of combination AC #23.24 
    44981 --- 
    44982 Chain | Description 
    44983 AC | No description available 
    44984  
    44985 Chain information for copy of combination AD #23.25 
    44986 --- 
    44987 Chain | Description 
    44988 AD | No description available 
    44989  
    44990 Chain information for copy of combination AE #23.26 
    44991 --- 
    44992 Chain | Description 
    44993 AE | No description available 
    44994  
    44995 Chain information for copy of combination AF #23.27 
    44996 --- 
    44997 Chain | Description 
    44998 AF | No description available 
    44999  
    45000 Chain information for copy of combination AG #23.28 
    45001 --- 
    45002 Chain | Description 
    45003 AG | No description available 
    45004  
    45005 Chain information for copy of combination AH #23.29 
    45006 --- 
    45007 Chain | Description 
    45008 AH | No description available 
    45009  
    45010 Chain information for copy of combination AI #23.30 
    45011 --- 
    45012 Chain | Description 
    45013 AI | No description available 
    45014  
    45015 Chain information for copy of combination AJ #23.31 
    45016 --- 
    45017 Chain | Description 
    45018 AJ | No description available 
    45019  
    45020 Chain information for copy of combination AK #23.32 
    45021 --- 
    45022 Chain | Description 
    45023 AK | No description available 
    45024  
    45025 Chain information for copy of combination AL #23.33 
    45026 --- 
    45027 Chain | Description 
    45028 AL | No description available 
    45029  
    45030 Chain information for copy of combination AM #23.34 
    45031 --- 
    45032 Chain | Description 
    45033 AM | No description available 
    45034  
    45035 Chain information for copy of combination AN #23.35 
    45036 --- 
    45037 Chain | Description 
    45038 AN | No description available 
    45039  
    45040 Chain information for copy of combination AO #23.36 
    45041 --- 
    45042 Chain | Description 
    45043 AO | No description available 
    45044  
    45045 Chain information for copy of combination AP #23.37 
    45046 --- 
    45047 Chain | Description 
    45048 AP | No description available 
    45049  
    45050 Chain information for copy of combination AQ #23.38 
    45051 --- 
    45052 Chain | Description 
    45053 AQ | No description available 
    45054  
    45055 Chain information for copy of combination AR #23.39 
    45056 --- 
    45057 Chain | Description 
    45058 AR | No description available 
    45059  
    45060 Chain information for copy of combination AS #23.40 
    45061 --- 
    45062 Chain | Description 
    45063 AS | No description available 
    45064  
    45065 Chain information for copy of combination AT #23.41 
    45066 --- 
    45067 Chain | Description 
    45068 AT | No description available 
    45069  
    45070 Chain information for copy of combination AU #23.42 
    45071 --- 
    45072 Chain | Description 
    45073 AU | No description available 
    45074  
    45075 Chain information for copy of combination AV #23.43 
    45076 --- 
    45077 Chain | Description 
    45078 AV | No description available 
    45079  
    45080 Chain information for copy of combination AW #23.44 
    45081 --- 
    45082 Chain | Description 
    45083 AW | No description available 
    45084  
    45085 Chain information for copy of combination AX #23.45 
    45086 --- 
    45087 Chain | Description 
    45088 AX | No description available 
    45089  
    45090 Chain information for copy of combination AY #23.46 
    45091 --- 
    45092 Chain | Description 
    45093 AY | No description available 
    45094  
    45095 Chain information for copy of combination AZ #23.47 
    45096 --- 
    45097 Chain | Description 
    45098 AZ | No description available 
    45099  
    45100 Chain information for copy of combination Aa #23.48 
    45101 --- 
    45102 Chain | Description 
    45103 Aa | No description available 
    45104  
    45105 Chain information for copy of combination Ab #23.49 
    45106 --- 
    45107 Chain | Description 
    45108 Ab | No description available 
    45109  
    45110 Chain information for copy of combination Ac #23.50 
    45111 --- 
    45112 Chain | Description 
    45113 Ac | No description available 
    45114  
    45115 Chain information for copy of combination Ad #23.51 
    45116 --- 
    45117 Chain | Description 
    45118 Ad | No description available 
    45119  
    45120 Chain information for copy of combination Ae #23.52 
    45121 --- 
    45122 Chain | Description 
    45123 Ae | No description available 
    45124  
    45125 Chain information for copy of combination Af #23.53 
    45126 --- 
    45127 Chain | Description 
    45128 Af | No description available 
    45129  
    45130 Chain information for copy of combination Ag #23.54 
    45131 --- 
    45132 Chain | Description 
    45133 Ag | No description available 
    45134  
    45135 Chain information for copy of combination Ah #23.55 
    45136 --- 
    45137 Chain | Description 
    45138 Ah | No description available 
    45139  
    45140 Chain information for copy of combination Ai #23.56 
    45141 --- 
    45142 Chain | Description 
    45143 Ai | No description available 
    45144  
    45145 Chain information for copy of combination Aj #23.57 
    45146 --- 
    45147 Chain | Description 
    45148 Aj | No description available 
    45149  
    45150 Chain information for copy of combination Ak #23.58 
    45151 --- 
    45152 Chain | Description 
    45153 Ak | No description available 
    45154  
    45155 Chain information for copy of combination Al #23.59 
    45156 --- 
    45157 Chain | Description 
    45158 Al | No description available 
    45159  
    45160 Chain information for copy of combination Am #23.60 
    45161 --- 
    45162 Chain | Description 
    45163 Am | No description available 
    45164  
    45165 Chain information for copy of combination An #23.61 
    45166 --- 
    45167 Chain | Description 
    45168 An | No description available 
    45169  
    45170 Chain information for copy of combination Ao #23.62 
    45171 --- 
    45172 Chain | Description 
    45173 Ao | No description available 
    45174  
    45175 Chain information for copy of combination Ap #23.63 
    45176 --- 
    45177 Chain | Description 
    45178 Ap | No description available 
    45179  
    45180 Chain information for copy of combination Aq #23.64 
    45181 --- 
    45182 Chain | Description 
    45183 Aq | No description available 
    45184  
    45185 Chain information for copy of combination Ar #23.65 
    45186 --- 
    45187 Chain | Description 
    45188 Ar | No description available 
    45189  
    45190 Chain information for copy of combination As #23.66 
    45191 --- 
    45192 Chain | Description 
    45193 As | No description available 
    45194  
    45195 Chain information for copy of combination At #23.67 
    45196 --- 
    45197 Chain | Description 
    45198 At | No description available 
    45199  
    45200 Chain information for copy of combination Au #23.68 
    45201 --- 
    45202 Chain | Description 
    45203 Au | No description available 
    45204  
    45205 Chain information for copy of combination Av #23.69 
    45206 --- 
    45207 Chain | Description 
    45208 Av | No description available 
    45209  
    45210 Chain information for copy of combination Aw #23.70 
    45211 --- 
    45212 Chain | Description 
    45213 Aw | No description available 
    45214  
    45215 Chain information for copy of combination Ax #23.71 
    45216 --- 
    45217 Chain | Description 
    45218 Ax | No description available 
    45219  
    45220 Chain information for copy of combination Ay #23.72 
    45221 --- 
    45222 Chain | Description 
    45223 Ay | No description available 
    45224  
    45225 Chain information for copy of combination Az #23.73 
    45226 --- 
    45227 Chain | Description 
    45228 Az | No description available 
    45229  
    45230 Chain information for copy of combination B #23.74 
    45231 --- 
    45232 Chain | Description 
    45233 B | No description available 
    45234  
    45235 Chain information for copy of combination BA #23.75 
    45236 --- 
    45237 Chain | Description 
    45238 BA | No description available 
    45239  
    45240 Chain information for copy of combination BB #23.76 
    45241 --- 
    45242 Chain | Description 
    45243 BB | No description available 
    45244  
    45245 Chain information for copy of combination BC #23.77 
    45246 --- 
    45247 Chain | Description 
    45248 BC | No description available 
    45249  
    45250 Chain information for copy of combination BD #23.78 
    45251 --- 
    45252 Chain | Description 
    45253 BD | No description available 
    45254  
    45255 Chain information for copy of combination BE #23.79 
    45256 --- 
    45257 Chain | Description 
    45258 BE | No description available 
    45259  
    45260 Chain information for copy of combination BF #23.80 
    45261 --- 
    45262 Chain | Description 
    45263 BF | No description available 
    45264  
    45265 Chain information for copy of combination BG #23.81 
    45266 --- 
    45267 Chain | Description 
    45268 BG | No description available 
    45269  
    45270 Chain information for copy of combination BH #23.82 
    45271 --- 
    45272 Chain | Description 
    45273 BH | No description available 
    45274  
    45275 Chain information for copy of combination BI #23.83 
    45276 --- 
    45277 Chain | Description 
    45278 BI | No description available 
    45279  
    45280 Chain information for copy of combination BJ #23.84 
    45281 --- 
    45282 Chain | Description 
    45283 BJ | No description available 
    45284  
    45285 Chain information for copy of combination BK #23.85 
    45286 --- 
    45287 Chain | Description 
    45288 BK | No description available 
    45289  
    45290 Chain information for copy of combination BL #23.86 
    45291 --- 
    45292 Chain | Description 
    45293 BL | No description available 
    45294  
    45295 Chain information for copy of combination BM #23.87 
    45296 --- 
    45297 Chain | Description 
    45298 BM | No description available 
    45299  
    45300 Chain information for copy of combination BN #23.88 
    45301 --- 
    45302 Chain | Description 
    45303 BN | No description available 
    45304  
    45305 Chain information for copy of combination BO #23.89 
    45306 --- 
    45307 Chain | Description 
    45308 BO | No description available 
    45309  
    45310 Chain information for copy of combination BP #23.90 
    45311 --- 
    45312 Chain | Description 
    45313 BP | No description available 
    45314  
    45315 Chain information for copy of combination BQ #23.91 
    45316 --- 
    45317 Chain | Description 
    45318 BQ | No description available 
    45319  
    45320 Chain information for copy of combination BR #23.92 
    45321 --- 
    45322 Chain | Description 
    45323 BR | No description available 
    45324  
    45325 Chain information for copy of combination BS #23.93 
    45326 --- 
    45327 Chain | Description 
    45328 BS | No description available 
    45329  
    45330 Chain information for copy of combination BT #23.94 
    45331 --- 
    45332 Chain | Description 
    45333 BT | No description available 
    45334  
    45335 Chain information for copy of combination BU #23.95 
    45336 --- 
    45337 Chain | Description 
    45338 BU | No description available 
    45339  
    45340 Chain information for copy of combination BV #23.96 
    45341 --- 
    45342 Chain | Description 
    45343 BV | No description available 
    45344  
    45345 Chain information for copy of combination BW #23.97 
    45346 --- 
    45347 Chain | Description 
    45348 BW | No description available 
    45349  
    45350 Chain information for copy of combination BX #23.98 
    45351 --- 
    45352 Chain | Description 
    45353 BX | No description available 
    45354  
    45355 Chain information for copy of combination BY #23.99 
    45356 --- 
    45357 Chain | Description 
    45358 BY | No description available 
    45359  
    45360 Chain information for copy of combination C #23.100 
    45361 --- 
    45362 Chain | Description 
    45363 C | No description available 
    45364  
    45365 Chain information for copy of combination D #23.101 
    45366 --- 
    45367 Chain | Description 
    45368 D | No description available 
    45369  
    45370 Chain information for copy of combination E #23.102 
    45371 --- 
    45372 Chain | Description 
    45373 E | No description available 
    45374  
    45375 Chain information for copy of combination F #23.103 
    45376 --- 
    45377 Chain | Description 
    45378 F | No description available 
    45379  
    45380 Chain information for copy of combination G #23.104 
    45381 --- 
    45382 Chain | Description 
    45383 G | No description available 
    45384  
    45385 Chain information for copy of combination H #23.105 
    45386 --- 
    45387 Chain | Description 
    45388 H | No description available 
    45389  
    45390 Chain information for copy of combination I #23.106 
    45391 --- 
    45392 Chain | Description 
    45393 I | No description available 
    45394  
    45395 Chain information for copy of combination J #23.107 
    45396 --- 
    45397 Chain | Description 
    45398 J | No description available 
    45399  
    45400 Chain information for copy of combination K #23.108 
    45401 --- 
    45402 Chain | Description 
    45403 K | No description available 
    45404  
    45405 Chain information for copy of combination L #23.109 
    45406 --- 
    45407 Chain | Description 
    45408 L | No description available 
    45409  
    45410 Chain information for copy of combination M #23.110 
    45411 --- 
    45412 Chain | Description 
    45413 M | No description available 
    45414  
    45415 Chain information for copy of combination N #23.111 
    45416 --- 
    45417 Chain | Description 
    45418 N | No description available 
    45419  
    45420 Chain information for copy of combination O #23.112 
    45421 --- 
    45422 Chain | Description 
    45423 O | No description available 
    45424  
    45425 Chain information for copy of combination P #23.113 
    45426 --- 
    45427 Chain | Description 
    45428 P | No description available 
    45429  
    45430 Chain information for copy of combination Q #23.114 
    45431 --- 
    45432 Chain | Description 
    45433 Q | No description available 
    45434  
    45435 Chain information for copy of combination R #23.115 
    45436 --- 
    45437 Chain | Description 
    45438 R | No description available 
    45439  
    45440 Chain information for copy of combination S #23.116 
    45441 --- 
    45442 Chain | Description 
    45443 S | No description available 
    45444  
    45445 Chain information for copy of combination T #23.117 
    45446 --- 
    45447 Chain | Description 
    45448 T | No description available 
    45449  
    45450 Chain information for copy of combination U #23.118 
    45451 --- 
    45452 Chain | Description 
    45453 U | No description available 
    45454  
    45455 Chain information for copy of combination V #23.119 
    45456 --- 
    45457 Chain | Description 
    45458 V | No description available 
    45459  
    45460 Chain information for copy of combination W #23.120 
    45461 --- 
    45462 Chain | Description 
    45463 W | No description available 
    45464  
    45465 Chain information for copy of combination X #23.121 
    45466 --- 
    45467 Chain | Description 
    45468 X | No description available 
    45469  
    45470 Chain information for copy of combination Y #23.122 
    45471 --- 
    45472 Chain | Description 
    45473 Y | No description available 
    45474  
    45475 Chain information for copy of combination Z #23.123 
    45476 --- 
    45477 Chain | Description 
    45478 Z | No description available 
    45479  
    45480 Chain information for copy of combination a #23.124 
    45481 --- 
    45482 Chain | Description 
    45483 a | No description available 
    45484  
    45485 Chain information for copy of combination b #23.125 
    45486 --- 
    45487 Chain | Description 
    45488 b | No description available 
    45489  
    45490 Chain information for copy of combination c #23.126 
    45491 --- 
    45492 Chain | Description 
    45493 c | No description available 
    45494  
    45495 Chain information for copy of combination d #23.127 
    45496 --- 
    45497 Chain | Description 
    45498 d | No description available 
    45499  
    45500 Chain information for copy of combination e #23.128 
    45501 --- 
    45502 Chain | Description 
    45503 e | No description available 
    45504  
    45505 Chain information for copy of combination f #23.129 
    45506 --- 
    45507 Chain | Description 
    45508 f | No description available 
    45509  
    45510 Chain information for copy of combination g #23.130 
    45511 --- 
    45512 Chain | Description 
    45513 g | No description available 
    45514  
    45515 Chain information for copy of combination h #23.131 
    45516 --- 
    45517 Chain | Description 
    45518 h | No description available 
    45519  
    45520 Chain information for copy of combination i #23.132 
    45521 --- 
    45522 Chain | Description 
    45523 i | No description available 
    45524  
    45525 Chain information for copy of combination j #23.133 
    45526 --- 
    45527 Chain | Description 
    45528 j | No description available 
    45529  
    45530 Chain information for copy of combination k #23.134 
    45531 --- 
    45532 Chain | Description 
    45533 k | No description available 
    45534  
    45535 Chain information for copy of combination l #23.135 
    45536 --- 
    45537 Chain | Description 
    45538 l | No description available 
    45539  
    45540 Chain information for copy of combination m #23.136 
    45541 --- 
    45542 Chain | Description 
    45543 m | No description available 
    45544  
    45545 Chain information for copy of combination n #23.137 
    45546 --- 
    45547 Chain | Description 
    45548 n | No description available 
    45549  
    45550 Chain information for copy of combination o #23.138 
    45551 --- 
    45552 Chain | Description 
    45553 o | No description available 
    45554  
    45555 Chain information for copy of combination p #23.139 
    45556 --- 
    45557 Chain | Description 
    45558 p | No description available 
    45559  
    45560 Chain information for copy of combination q #23.140 
    45561 --- 
    45562 Chain | Description 
    45563 q | No description available 
    45564  
    45565 Chain information for copy of combination r #23.141 
    45566 --- 
    45567 Chain | Description 
    45568 r | No description available 
    45569  
    45570 Chain information for copy of combination s #23.142 
    45571 --- 
    45572 Chain | Description 
    45573 s | No description available 
    45574  
    45575 Chain information for copy of combination t #23.143 
    45576 --- 
    45577 Chain | Description 
    45578 t | No description available 
    45579  
    45580 Chain information for copy of combination u #23.144 
    45581 --- 
    45582 Chain | Description 
    45583 u | No description available 
    45584  
    45585 Chain information for copy of combination v #23.145 
    45586 --- 
    45587 Chain | Description 
    45588 v | No description available 
    45589  
    45590 Chain information for copy of combination w #23.146 
    45591 --- 
    45592 Chain | Description 
    45593 w | No description available 
    45594  
    45595 Chain information for copy of combination x #23.147 
    45596 --- 
    45597 Chain | Description 
    45598 x | No description available 
    45599  
    45600 Chain information for copy of combination y #23.148 
    45601 --- 
    45602 Chain | Description 
    45603 y | No description available 
    45604  
    45605 Chain information for copy of combination z #23.149 
    45606 --- 
    45607 Chain | Description 
    45608 z | No description available 
    45609  
    45610 Drag select of 3074 residues 
    45611 
    45612 > hide #23.1 models
    45613 
    45614 > show #23.1 models
    45615 
    45616 > hide #23.1 models
    45617 
    45618 > hide #23.9 models
    45619 
    45620 > show #23.9 models
    45621 
    45622 > hide #23.9 models
    45623 
    45624 > hide #23.10 models
    45625 
    45626 > hide #!23.11 models
    45627 
    45628 > show #23.10 models
    45629 
    45630 > hide #23.10 models
    45631 
    45632 > show #!23.11 models
    45633 
    45634 > hide #23.15 models
    45635 
    45636 > show #23.15 models
    45637 
    45638 > hide #23.15 models
    45639 
    45640 > hide #23.22 models
    45641 
    45642 > show #23.22 models
    45643 
    45644 > hide #23.22 models
    45645 
    45646 > hide #23.23 models
    45647 
    45648 > hide #23.26 models
    45649 
    45650 > hide #23.30 models
    45651 
    45652 > show #23.30 models
    45653 
    45654 > hide #23.30 models
    45655 
    45656 > hide #23.41 models
    45657 
    45658 > show #23.41 models
    45659 
    45660 > hide #23.41 models
    45661 
    45662 > hide #23.42 models
    45663 
    45664 > hide #23.43 models
    45665 
    45666 > hide #23.44 models
    45667 
    45668 > hide #23.45 models
    45669 
    45670 > hide #23.46 models
    45671 
    45672 > hide #23.47 models
    45673 
    45674 > hide #23.48 models
    45675 
    45676 > hide #23.49 models
    45677 
    45678 > hide #23.50 models
    45679 
    45680 > hide #23.53 models
    45681 
    45682 > show #23.53 models
    45683 
    45684 > hide #23.53 models
    45685 
    45686 > hide #23.64 models
    45687 
    45688 > hide #23.65 models
    45689 
    45690 > hide #23.66 models
    45691 
    45692 > hide #23.67 models
    45693 
    45694 > hide #23.68 models
    45695 
    45696 > hide #23.69 models
    45697 
    45698 > hide #23.70 models
    45699 
    45700 > hide #23.71 models
    45701 
    45702 > hide #23.72 models
    45703 
    45704 > hide #23.73 models
    45705 
    45706 > hide #23.74 models
    45707 
    45708 > show #23.74 models
    45709 
    45710 > hide #!23.100 models
    45711 
    45712 > show #!23.100 models
    45713 
    45714 > hide #!23.101 models
    45715 
    45716 > show #!23.101 models
    45717 
    45718 > hide #23.102 models
    45719 
    45720 > show #23.102 models
    45721 
    45722 > hide #!23.104 models
    45723 
    45724 > show #!23.104 models
    45725 
    45726 > hide #!23.121 models
    45727 
    45728 > show #!23.121 models
    45729 
    45730 > hide #23.145 models
    45731 
    45732 > select clear
    45733 
    45734 Drag select of 10 residues 
    45735 
    45736 > hide #23.83 models
    45737 
    45738 > hide #23.82 models
    45739 
    45740 > hide #23.78 models
    45741 
    45742 > select clear
    45743 
    45744 Drag select of 17 residues 
    45745 
    45746 > hide #23.27 models
    45747 
    45748 > hide #23.25 models
    45749 
    45750 > hide #23.24 models
    45751 
    45752 > select clear
    45753 
    45754 Drag select of 5 residues 
    45755 
    45756 > hide #23.8 models
    45757 
    45758 > select clear
    45759 
    45760 Drag select of 17 residues 
    45761 
    45762 > hide #23.79 models
    45763 
    45764 > hide #23.80 models
    45765 
    45766 > hide #23.81 models
    45767 
    45768 Drag select of 19 residues 
    45769 
    45770 > hide #23.84 models
    45771 
    45772 > hide #23.85 models
    45773 
    45774 > hide #23.86 models
    45775 
    45776 > hide #23.87 models
    45777 
    45778 Drag select of 2262 residues 
    45779 Drag select of 417 residues 
    45780 
    45781 > hide #23.88 models
    45782 
    45783 > hide #23.89 models
    45784 
    45785 > hide #23.90 models
    45786 
    45787 > hide #23.91 models
    45788 
    45789 > hide #23.92 models
    45790 
    45791 > hide #23.93 models
    45792 
    45793 > hide #23.94 models
    45794 
    45795 > hide #23.95 models
    45796 
    45797 > hide #23.96 models
    45798 
    45799 > hide #23.97 models
    45800 
    45801 > hide #23.98 models
    45802 
    45803 > hide #23.99 models
    45804 
    45805 > hide #23.142 models
    45806 
    45807 > hide #23.141 models
    45808 
    45809 > hide #23.140 models
    45810 
    45811 > hide #23.139 models
    45812 
    45813 > hide #23.138 models
    45814 
    45815 > hide #23.137 models
    45816 
    45817 > save /Users/shoichi/Desktop/For-PflD_PflC.cxs includeMaps true
    45818 
    45819 [Repeated 1 time(s)]
    45820 
    45821 ——— End of log from Fri Jul 11 17:08:26 2025 ———
    45822 
    45823 opened ChimeraX session 
    45824 Drag select of 281 residues 
    45825 
    45826 > hide #23.2 models
    45827 
    45828 > hide #23.20 models
    45829 
    45830 > hide #23.21 models
    45831 
    45832 > hide #23.33 models
    45833 
    45834 > hide #23.34 models
    45835 
    45836 > hide #23.35 models
    45837 
    45838 > select clear
    45839 
    45840 Drag select of 34 residues 
    45841 
    45842 > hide #23.147 models
    45843 
    45844 > hide #23.148 models
    45845 
    45846 > hide #23.149 models
    45847 
    45848 Drag select of 65 residues 
    45849 
    45850 > hide #23.3 models
    45851 
    45852 > hide #23.4 models
    45853 
    45854 > hide #23.5 models
    45855 
    45856 Drag select of 137 residues 
    45857 
    45858 > hide #23.31 models
    45859 
    45860 > hide #23.32 models
    45861 
    45862 > hide #23.40 models
    45863 
    45864 Drag select of 77 residues 
    45865 
    45866 > hide #23.146 models
    45867 
    45868 > hide #23.6 models
    45869 
    45870 > hide #23.7 models
    45871 
    45872 Drag select of 21 residues 
    45873 
    45874 > hide #23.12 models
    45875 
    45876 > hide #23.75 models
    45877 
    45878 Drag select of 42 residues 
    45879 
    45880 > hide #23.39 models
    45881 
    45882 > hide #23.38 models
    45883 
    45884 > hide #23.37 models
    45885 
    45886 Drag select of 20 residues 
    45887 
    45888 > hide #23.36 models
    45889 
    45890 Drag select of 179 residues 
    45891 
    45892 > hide #23.56 models
    45893 
    45894 > hide #23.57 models
    45895 
    45896 > hide #23.58 models
    45897 
    45898 > hide #23.59 models
    45899 
    45900 > hide #23.60 models
    45901 
    45902 > hide #23.61 models
    45903 
    45904 Drag select of 51 residues 
    45905 
    45906 > hide #23.62 models
    45907 
    45908 > hide #23.63 models
    45909 
    45910 > select clear
    45911 
    45912 Drag select of 93 residues 
    45913 
    45914 > hide #23.54 models
    45915 
    45916 > hide #23.55 models
    45917 
    45918 Drag select of 15 residues 
    45919 
    45920 > hide #23.76 models
    45921 
    45922 > hide #23.77 models
    45923 
    45924 Drag select of 171 residues 
    45925 
    45926 > hide #23.17 models
    45927 
    45928 > hide #23.18 models
    45929 
    45930 > hide #23.19 models
    45931 
    45932 Drag select of 8 residues 
    45933 
    45934 > hide #23.16 models
    45935 
    45936 Drag select of 859 residues 
    45937 
    45938 > hide #!23.123 models
    45939 
    45940 > hide #23.129 models
    45941 
    45942 > hide #!23.130 models
    45943 
    45944 > select clear
    45945 
    45946 The cached device pixel ratio value was stale on window expose. Please file a
    45947 QTBUG which explains how to reproduce. 
    45948 
    45949 > close #23.75-99
    45950 
    45951 > close #23.53-73
    45952 
    45953 > close #23.30-50
    45954 
    45955 > close #23.15-27
    45956 
    45957 > close #23.1-10
    45958 
    45959 > close #23.12
    45960 
    45961 > close #23.123
    45962 
    45963 > close #23.129#23.130
    45964 
    45965 > close #23.137-142
    45966 
    45967 > close #23.145-149
    45968 
    45969 > select add #23.11
    45970 
    45971 1542 atoms, 1562 bonds, 2 pseudobonds, 189 residues, 2 models selected 
    45972 
    45973 > select add #23
    45974 
    45975 92292 atoms, 93828 bonds, 40 pseudobonds, 10088 residues, 69 models selected 
    45976 
    45977 > save /Users/shoichitachiyama/Desktop/Cage-PflCD.pdb selectedOnly true
    45978 
    45979 > open /Users/shoichitachiyama/Desktop/Cage-PflCD.pdb
    45980 
    45981 Summary of feedback from opening /Users/shoichitachiyama/Desktop/Cage-
    45982 PflCD.pdb 
    45983 --- 
    45984 warnings | Start residue of secondary structure not found: HELIX 9 9 LEU B 16 ILE B 102 1 87 
    45985 Start residue of secondary structure not found: HELIX 10 10 VAL B 103 THR B
    45986 105 1 3 
    45987 Start residue of secondary structure not found: HELIX 11 11 ARG B 129 LEU B
    45988 136 1 8 
    45989 Start residue of secondary structure not found: HELIX 12 12 GLU B 137 PRO B
    45990 139 1 3 
    45991 Start residue of secondary structure not found: HELIX 13 13 LEU B 140 SER B
    45992 142 1 3 
    45993 1328 messages similar to the above omitted 
    45994  
    45995 Chain information for Cage-PflCD.pdb 
    45996 --- 
    45997 Chain | Description 
    45998 24.1/A 24.10/D 24.13/G 24.16/J 24.19/M 24.22/P 24.25/S 24.28/V | No description available 
    45999 24.2/A1 24.3/A2 24.4/AG 24.5/AH 24.6/Ad 24.7/Ae 24.43/t 24.44/u | No description available 
    46000 24.8/B 24.11/E 24.14/H 24.17/K 24.20/N 24.23/Q 24.26/T 24.29/W | No description available 
    46001 24.9/C 24.12/F 24.15/I 24.18/L 24.21/O 24.24/R 24.27/U 24.30/X | No description available 
    46002 24.31/Y 24.32/a 24.33/b 24.34/c | No description available 
    46003 24.35/d 24.37/h 24.39/j 24.41/l | No description available 
    46004 24.36/e 24.38/i 24.40/k 24.42/m | No description available 
    46005  
    46006 
    46007 > select subtract #23
    46008 
    46009 Nothing selected 
    46010 
    46011 > hide #!23 models
    46012 
    46013 > show #!20 models
    46014 
    46015 > show #!19 models
    46016 
    46017 > hide #!19 models
    46018 
    46019 > show #!19 models
    46020 
    46021 > hide #!19 models
    46022 
    46023 > show #!19 models
    46024 
    46025 > surface dust #19 size 21.4
    46026 
    46027 > surface dust #20 size 21.4
    46028 
    46029 > surface dust #20 size 50
    46030 
    46031 > hide #!19 models
    46032 
    46033 > show #!21 models
    46034 
    46035 > color #21 #b2b2ff6c models
    46036 
    46037 > color #21 #b2b2ff61 models
    46038 
    46039 > close #24
    46040 
    46041 > show #!23 models
    46042 
    46043 Drag select of 36 residues 
    46044 
    46045 > select clear
    46046 
    46047 Drag select of 29 residues 
    46048 
    46049 > hide #23.143 models
    46050 
    46051 > hide #23.144 models
    46052 
    46053 Drag select of 47 residues 
    46054 
    46055 > hide #23.13 models
    46056 
    46057 > hide #23.14 models
    46058 
    46059 Drag select of 69 residues 
    46060 
    46061 > hide #23.28 models
    46062 
    46063 > hide #23.29 models
    46064 
    46065 Drag select of 66 residues 
    46066 
    46067 > hide #23.51 models
    46068 
    46069 > hide #23.52 models
    46070 
    46071 The cached device pixel ratio value was stale on window expose. Please file a
    46072 QTBUG which explains how to reproduce. 
    46073 
    46074 > close #23.13-14,28-29,51-52
    46075 
    46076 Drag select of 8 residues 
    46077 
    46078 > select clear
    46079 
    46080 Drag select of 26 residues 
    46081 
    46082 > hide #!23.136 models
    46083 
    46084 Drag select of 12 residues 
    46085 
    46086 > hide #!23.134 models
    46087 
    46088 Drag select of 20 residues 
    46089 
    46090 > hide #!23.128 models
    46091 
    46092 Drag select of 5 residues 
    46093 
    46094 > hide #!23.132 models
    46095 
    46096 Drag select of 9 residues 
    46097 
    46098 > hide #23.131 models
    46099 
    46100 Drag select of 3 residues 
    46101 
    46102 > hide #23.133 models
    46103 
    46104 Drag select of 1 residues 
    46105 
    46106 > hide #23.135 models
    46107 
    46108 Drag select of 1 residues 
    46109 
    46110 > hide #23.127 models
    46111 
    46112 > close #23.127,131,133,135,143-144#23.128,132,134,136
    46113 
    46114 > show #!19 models
    46115 
    46116 > hide #!19 models
    46117 
    46118 > select add #23
    46119 
    46120 46256 atoms, 47148 bonds, 36 pseudobonds, 5632 residues, 49 models selected 
    46121 
    46122 > save /Users/shoichitachiyama/Desktop/Cage-PflCD.pdb selectedOnly true
    46123 
    46124 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    46125 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    46126 > refinment/For-PflCD/Cage-PflCD.pdb"
    46127 
    46128 Chain information for Cage-PflCD.pdb 
    46129 --- 
    46130 Chain | Description 
    46131 24.1/A 24.4/D 24.7/G 24.10/J 24.13/M 24.16/P 24.19/S 24.22/V | No description available 
    46132 24.2/B 24.5/E 24.8/H 24.11/K 24.14/N 24.17/Q 24.20/T 24.23/W | No description available 
    46133 24.3/C 24.6/F 24.9/I 24.12/L 24.15/O 24.18/R 24.21/U 24.24/X | No description available 
    46134 24.25/Y 24.26/a 24.27/b 24.28/c | No description available 
    46135  
    46136 
    46137 > hide #!23 models
    46138 
    46139 > select subtract #23
    46140 
    46141 Nothing selected 
    46142 
    46143 > show #!19 models
    46144 
    46145 > color #19 #ffffb266 models
    46146 
    46147 > show #!10 models
    46148 
    46149 > hide #!10 models
    46150 
    46151 > show #!11 models
    46152 
    46153 > hide #!11 models
    46154 
    46155 > show #!11 models
    46156 
    46157 > show #!13 models
    46158 
    46159 > hide #!13 models
    46160 
    46161 > show #!13 models
    46162 
    46163 Cell requested for row 12 is out of bounds for table with 25 rows! Resizing
    46164 table model. 
    46165 
    46166 > select add #13
    46167 
    46168 18892 atoms, 19223 bonds, 2 pseudobonds, 2334 residues, 2 models selected 
    46169 
    46170 > show sel surfaces
    46171 
    46172 > select clear
    46173 
    46174 > color #19 #c0c0c080 models
    46175 
    46176 > color #20 #c0c0c080 models
    46177 
    46178 > color #21 #c0c0c080 models
    46179 
    46180 > hide #!24 models
    46181 
    46182 > show #!24 models
    46183 
    46184 > hide #!24 models
    46185 
    46186 > show #!24 models
    46187 
    46188 > hide #!19 models
    46189 
    46190 > show #!19 models
    46191 
    46192 The cached device pixel ratio value was stale on window expose. Please file a
    46193 QTBUG which explains how to reproduce. 
    46194 
    46195 Segmenting PflC.mrc, density threshold 0.007524 
    46196 Showing 36 region surfaces 
    46197 512 watershed regions, grouped to 36 regions 
    46198 Showing PflC.seg - 36 regions, 36 surfaces 
    46199 
    46200 > select #25.4
    46201 
    46202 1 model selected 
    46203 
    46204 > select add #25.22
    46205 
    46206 2 models selected 
    46207 
    46208 > select add #25.19
    46209 
    46210 3 models selected 
    46211 
    46212 > select add #25.15
    46213 
    46214 4 models selected 
    46215 
    46216 > select add #25.13
    46217 
    46218 5 models selected 
    46219 
    46220 > select add #25.18
    46221 
    46222 6 models selected 
    46223 
    46224 > select add #25.17
    46225 
    46226 7 models selected 
    46227 
    46228 > select add #25.20
    46229 
    46230 8 models selected 
    46231 
    46232 > select add #25.35
    46233 
    46234 9 models selected 
    46235 
    46236 > select add #25.3
    46237 
    46238 10 models selected 
    46239 
    46240 > select add #25.34
    46241 
    46242 11 models selected 
    46243 
    46244 > select add #25.12
    46245 
    46246 12 models selected 
    46247 
    46248 > select add #25.26
    46249 
    46250 13 models selected 
    46251 
    46252 > select add #25.8
    46253 
    46254 14 models selected 
    46255 
    46256 > select add #25.9
    46257 
    46258 15 models selected 
    46259 
    46260 > select add #25.5
    46261 
    46262 16 models selected 
    46263 
    46264 > select add #25.2
    46265 
    46266 17 models selected 
    46267 
    46268 > select add #25.1
    46269 
    46270 18 models selected 
    46271 
    46272 > select subtract #25.1
    46273 
    46274 17 models selected 
    46275 Grouped 17 regions 
    46276 
    46277 > select add #25.21
    46278 
    46279 2 models selected 
    46280 
    46281 > select add #25.29
    46282 
    46283 3 models selected 
    46284 
    46285 > select add #25.28
    46286 
    46287 4 models selected 
    46288 
    46289 > select add #25.30
    46290 
    46291 5 models selected 
    46292 
    46293 > select add #25.24
    46294 
    46295 6 models selected 
    46296 
    46297 > select add #25.27
    46298 
    46299 7 models selected 
    46300 Grouped 7 regions 
    46301 
    46302 > select #25.2
    46303 
    46304 1 model selected 
    46305 
    46306 > select #25.16
    46307 
    46308 1 model selected 
    46309 
    46310 > hide #!20 models
    46311 
    46312 > select #25.16
    46313 
    46314 1 model selected 
    46315 
    46316 > select add #25.25
    46317 
    46318 2 models selected 
    46319 
    46320 > select add #25.23
    46321 
    46322 3 models selected 
    46323 
    46324 > select add #25.14
    46325 
    46326 4 models selected 
    46327 
    46328 > select #25.23
    46329 
    46330 1 model selected 
    46331 
    46332 > select add #25.25
    46333 
    46334 2 models selected 
    46335 
    46336 > select add #25.1
    46337 
    46338 3 models selected 
    46339 
    46340 > select subtract #25.1
    46341 
    46342 2 models selected 
    46343 
    46344 > select add #25.31
    46345 
    46346 3 models selected 
    46347 
    46348 > select add #25.33
    46349 
    46350 4 models selected 
    46351 
    46352 > select add #25.32
    46353 
    46354 5 models selected 
    46355 Grouped 5 regions 
    46356 Showing 10 region surfaces 
    46357 
    46358 > select add #25.2
    46359 
    46360 2 models selected 
    46361 Grouped 2 regions 
    46362 
    46363 > select #25.14
    46364 
    46365 1 model selected 
    46366 
    46367 > select add #25.11
    46368 
    46369 2 models selected 
    46370 
    46371 > select add #25.16
    46372 
    46373 3 models selected 
    46374 Ungrouped to 9 regions 
    46375 
    46376 > select #25.9
    46377 
    46378 1 model selected 
    46379 
    46380 > select add #25.5
    46381 
    46382 2 models selected 
    46383 
    46384 > select add #25.3
    46385 
    46386 3 models selected 
    46387 
    46388 > select add #25.4
    46389 
    46390 4 models selected 
    46391 
    46392 > select add #25.15
    46393 
    46394 5 models selected 
    46395 
    46396 > select add #25.13
    46397 
    46398 6 models selected 
    46399 Grouped 6 regions 
    46400 Showing 10 region surfaces 
    46401 
    46402 > select add #25.2
    46403 
    46404 2 models selected 
    46405 Grouped 2 regions 
    46406 
    46407 > select #25.12
    46408 
    46409 1 model selected 
    46410 Ungrouped to 4 regions 
    46411 
    46412 > select #25.4
    46413 
    46414 1 model selected 
    46415 
    46416 > select add #25.9
    46417 
    46418 2 models selected 
    46419 
    46420 > select add #25.3
    46421 
    46422 3 models selected 
    46423 
    46424 > select add #25.2
    46425 
    46426 4 models selected 
    46427 Grouped 4 regions 
    46428 
    46429 > hide #!19 models
    46430 
    46431 > select #25.8
    46432 
    46433 1 model selected 
    46434 
    46435 > select add #25.5
    46436 
    46437 2 models selected 
    46438 
    46439 > select add #25.17
    46440 
    46441 3 models selected 
    46442 Ungrouped to 9 regions 
    46443 
    46444 > select #25.9
    46445 
    46446 1 model selected 
    46447 
    46448 > select add #25.4
    46449 
    46450 2 models selected 
    46451 
    46452 > select #25.14
    46453 
    46454 1 model selected 
    46455 
    46456 > select #25.10
    46457 
    46458 1 model selected 
    46459 
    46460 > save /Users/shoichitachiyama/Desktop/PflCD.cxs includeMaps true
    46461 
    46462 ——— End of log from Fri Jul 11 20:48:14 2025 ———
    46463 
    46464 opened ChimeraX session 
    46465 Showing PflC.seg - 15 regions, 15 surfaces 
    46466 
    46467 > hide #!25 models
    46468 
    46469 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    46470 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    46471 > refinment/For-PflCD/Additional_Segment/PflCD.mrc"
    46472 
    46473 Opened PflCD.mrc as #26, grid size 200,200,200, pixel 2.14, shown at level
    46474 0.0169, step 1, values float32 
    46475 
    46476 > volume #26 level 0.00187
    46477 
    46478 The cached device pixel ratio value was stale on window expose. Please file a
    46479 QTBUG which explains how to reproduce. 
    46480 
    46481 Segmenting PflCD.mrc, density threshold 0.001870 
    46482 Showing 20 region surfaces 
    46483 327 watershed regions, grouped to 20 regions 
    46484 Showing PflCD.seg - 20 regions, 20 surfaces 
    46485 
    46486 > select #25.9
    46487 
    46488 1 model selected 
    46489 
    46490 > select add #25.17
    46491 
    46492 2 models selected 
    46493 
    46494 > select add #25.2
    46495 
    46496 3 models selected 
    46497 
    46498 > hide #!26 models
    46499 
    46500 > select add #25.19
    46501 
    46502 4 models selected 
    46503 
    46504 > select add #25.18
    46505 
    46506 5 models selected 
    46507 
    46508 > select add #25.16
    46509 
    46510 6 models selected 
    46511 
    46512 > select add #25.1
    46513 
    46514 7 models selected 
    46515 
    46516 > select add #25.12
    46517 
    46518 8 models selected 
    46519 
    46520 > select add #25.11
    46521 
    46522 9 models selected 
    46523 
    46524 > select add #25.15
    46525 
    46526 10 models selected 
    46527 
    46528 > select add #25.20
    46529 
    46530 11 models selected 
    46531 Grouped 11 regions 
    46532 
    46533 The cached device pixel ratio value was stale on window expose. Please file a
    46534 QTBUG which explains how to reproduce. 
    46535 
    46536 Opened PflCD_imasked as #27, grid size 200,200,200, pixel 2.14, shown at step
    46537 1, values float32 
    46538 Segmenting PflCD_imasked, density threshold 0.001870 
    46539 Showing 9 region surfaces 
    46540 168 watershed regions, grouped to 9 regions 
    46541 Showing PflCD_imasked.seg - 9 regions, 9 surfaces 
    46542 
    46543 > select #25.4
    46544 
    46545 1 model selected 
    46546 
    46547 > select add #25.5
    46548 
    46549 2 models selected 
    46550 
    46551 > select add #25.6
    46552 
    46553 3 models selected 
    46554 Ungrouped to 10 regions 
    46555 
    46556 > select #25.12
    46557 
    46558 1 model selected 
    46559 
    46560 > hide #!27 models
    46561 
    46562 > select add #25.17
    46563 
    46564 2 models selected 
    46565 
    46566 > select add #25.19
    46567 
    46568 3 models selected 
    46569 
    46570 > select subtract #25.19
    46571 
    46572 2 models selected 
    46573 Grouped 2 regions 
    46574 
    46575 > select #25.19
    46576 
    46577 1 model selected 
    46578 
    46579 > select clear
    46580 
    46581 > select #25.19
    46582 
    46583 1 model selected 
    46584 Ungrouped to 4 regions 
    46585 
    46586 > select #25.17
    46587 
    46588 1 model selected 
    46589 
    46590 > select add #25.5
    46591 
    46592 2 models selected 
    46593 
    46594 > select add #25.4
    46595 
    46596 3 models selected 
    46597 Grouped 3 regions 
    46598 
    46599 > select add #25.12
    46600 
    46601 2 models selected 
    46602 Grouped 2 regions 
    46603 
    46604 > select add #25.16
    46605 
    46606 2 models selected 
    46607 Grouped 2 regions 
    46608 
    46609 > select #25.18
    46610 
    46611 1 model selected 
    46612 Ungrouped to 2 regions 
    46613 
    46614 > select #25.5
    46615 
    46616 1 model selected 
    46617 Showing 15 region surfaces 
    46618 
    46619 > select add #25.4
    46620 
    46621 2 models selected 
    46622 Grouped 2 regions 
    46623 
    46624 > select #25.10
    46625 
    46626 1 model selected 
    46627 Ungrouped to 3 regions 
    46628 
    46629 > select #25.17
    46630 
    46631 1 model selected 
    46632 
    46633 > select add #25.4
    46634 
    46635 2 models selected 
    46636 Grouped 2 regions 
    46637 
    46638 > select add #25.12
    46639 
    46640 2 models selected 
    46641 
    46642 > select add #25.14
    46643 
    46644 3 models selected 
    46645 Grouped 3 regions 
    46646 
    46647 > select #25.11
    46648 
    46649 1 model selected 
    46650 
    46651 > select add #25.4
    46652 
    46653 2 models selected 
    46654 Grouped 2 regions 
    46655 
    46656 > select add #25.15
    46657 
    46658 4 models selected 
    46659 
    46660 > select clear
    46661 
    46662 Showing 12 region surfaces 
    46663 
    46664 > select #25.4
    46665 
    46666 1 model selected 
    46667 
    46668 > select add #25.15
    46669 
    46670 2 models selected 
    46671 
    46672 > select add #25.2
    46673 
    46674 3 models selected 
    46675 
    46676 > select subtract #25.2
    46677 
    46678 2 models selected 
    46679 Grouped 2 regions 
    46680 
    46681 > select clear
    46682 
    46683 > select #25.4
    46684 
    46685 1 model selected 
    46686 Opened PflCD_imasked_imasked as #28, grid size 200,200,200, pixel 2.14, shown
    46687 at step 1, values float32 
    46688 Segmenting PflCD_imasked_imasked, density threshold 0.001870 
    46689 Showing 8 region surfaces 
    46690 142 watershed regions, grouped to 8 regions 
    46691 Showing PflCD_imasked_imasked.seg - 8 regions, 8 surfaces 
    46692 
    46693 > select #25.2
    46694 
    46695 1 model selected 
    46696 
    46697 > select add #25.3
    46698 
    46699 2 models selected 
    46700 
    46701 > select add #25.1
    46702 
    46703 3 models selected 
    46704 Ungrouped to 7 regions 
    46705 Ungrouped to 33 regions 
    46706 
    46707 > select #25.2
    46708 
    46709 1 model selected 
    46710 
    46711 > select add #25.3
    46712 
    46713 2 models selected 
    46714 
    46715 > select add #25.1
    46716 
    46717 3 models selected 
    46718 
    46719 > select add #25.18
    46720 
    46721 4 models selected 
    46722 
    46723 > select add #25.17
    46724 
    46725 5 models selected 
    46726 
    46727 > select add #25.20
    46728 
    46729 6 models selected 
    46730 
    46731 > hide #!28 models
    46732 
    46733 Segmenting PflCD_imasked_imasked, density threshold 0.001870 
    46734 Showing 8 region surfaces 
    46735 142 watershed regions, grouped to 8 regions 
    46736 Showing PflCD_imasked_imasked.seg - 8 regions, 8 surfaces 
    46737 
    46738 > select #25.8
    46739 
    46740 1 model selected 
    46741 
    46742 > select add #25.7
    46743 
    46744 2 models selected 
    46745 
    46746 > select add #25.4
    46747 
    46748 3 models selected 
    46749 Ungrouped to 8 regions 
    46750 Ungrouped to 15 regions 
    46751 Ungrouped to 8 regions 
    46752 Ungrouped to 0 regions 
    46753 
    46754 > select #25.23
    46755 
    46756 1 model selected 
    46757 
    46758 > select add #25.16
    46759 
    46760 2 models selected 
    46761 
    46762 > select add #25.24
    46763 
    46764 3 models selected 
    46765 
    46766 > select add #25.22
    46767 
    46768 4 models selected 
    46769 
    46770 > select add #25.27
    46771 
    46772 5 models selected 
    46773 
    46774 > select subtract #25.27
    46775 
    46776 4 models selected 
    46777 Grouped 4 regions 
    46778 
    46779 > select #25.27
    46780 
    46781 1 model selected 
    46782 Ungrouped to 0 regions 
    46783 Showing 25 region surfaces 
    46784 
    46785 > select #25.8
    46786 
    46787 1 model selected 
    46788 Opened PflCD_imasked_imasked_imasked as #29, grid size 200,200,200, pixel
    46789 2.14, shown at step 1, values float32 
    46790 
    46791 > hide #!25 models
    46792 
    46793 The cached device pixel ratio value was stale on window expose. Please file a
    46794 QTBUG which explains how to reproduce. 
    46795 
    46796 > save /Users/shoichitachiyama/Desktop/Polished-PflCD.mrc models #29
    46797 
    46798 Cell requested for row 25 is out of bounds for table with 54 rows! Resizing
    46799 table model. 
    46800 
    46801 > close #26-28
    46802 
    46803 > select add #25
    46804 
    46805 26 models selected 
    46806 
    46807 > select subtract #25
    46808 
    46809 Nothing selected 
    46810 
    46811 The cached device pixel ratio value was stale on window expose. Please file a
    46812 QTBUG which explains how to reproduce. 
    46813 
    46814 > volume gaussian #29 sDev 2
    46815 
    46816 Opened Polished-PflCD.mrc gaussian as #26, grid size 200,200,200, pixel 2.14,
    46817 shown at step 1, values float32 
    46818 
    46819 > surface dust #26 size 40
    46820 
    46821 > color #26 #c0c0c080 models
    46822 
    46823 Drag select of 357 residues 
    46824 
    46825 > hide #24.16 models
    46826 
    46827 > hide #24.17 models
    46828 
    46829 > hide #24.18 models
    46830 
    46831 Drag select of 203 residues 
    46832 
    46833 > hide #24.26 models
    46834 
    46835 > select clear
    46836 
    46837 > hide #!11 models
    46838 
    46839 > show #!10 models
    46840 
    46841 > hide #!10 models
    46842 
    46843 > show #!14 models
    46844 
    46845 > hide #!14 models
    46846 
    46847 > show #!9 models
    46848 
    46849 Drag select of 423 residues 
    46850 Drag select of 3 residues 
    46851 
    46852 > hide sel cartoons
    46853 
    46854 Drag select of 10 residues 
    46855 
    46856 > hide sel cartoons
    46857 
    46858 Drag select of 15 residues 
    46859 
    46860 > hide sel cartoons
    46861 
    46862 Drag select of 2 residues 
    46863 
    46864 > hide sel cartoons
    46865 
    46866 > hide #24.15 models
    46867 
    46868 > show #24.15 models
    46869 
    46870 > hide #24.15 models
    46871 
    46872 > show #24.15 models
    46873 
    46874 > hide #!26 models
    46875 
    46876 > select clear
    46877 
    46878 Drag select of 168 residues 
    46879 
    46880 > color #24.25 #b2c89dff
    46881 
    46882 > color #24.25 #b9d0a3ff
    46883 
    46884 > color #24.25 #95d0a7ff
    46885 
    46886 > color #24.25 #95d0a4ff
    46887 
    46888 > color #24.25 #9ed0afff
    46889 
    46890 > color #24.25 #75d09dff
    46891 
    46892 > color #24.25 #73d0a5ff
    46893 
    46894 > color #24.25 #47d07eff
    46895 
    46896 > color #24.25 #92d0aeff
    46897 
    46898 > color #24.25 #82d08fff
    46899 
    46900 > color #24.25 #9ed0a6ff
    46901 
    46902 > color #24.25 #c2ffcbff
    46903 
    46904 > color #24.25 #9db8ffff
    46905 
    46906 > color #24.25 #7889ffff
    46907 
    46908 > color #24.25 #7494ffff
    46909 
    46910 > color #24.25 #7593ffff
    46911 
    46912 > color #24.25 #7881ffff
    46913 
    46914 > color #24.25 #7a83ffff
    46915 
    46916 > color #24.25 #7b80ffff
    46917 
    46918 > select clear
    46919 
    46920 > show #24.26 models
    46921 
    46922 > hide #24.26 models
    46923 
    46924 > hide #24.25 models
    46925 
    46926 > show #24.25 models
    46927 
    46928 > hide #24.27 models
    46929 
    46930 > show #24.27 models
    46931 
    46932 > color #24.27 #7b80ffff
    46933 
    46934 > color #24.28 #7b80ffff
    46935 
    46936 > hide #24.21 models
    46937 
    46938 > show #24.21 models
    46939 
    46940 > hide #24.19 models
    46941 
    46942 > show #24.19 models
    46943 
    46944 > hide #24.19 models
    46945 
    46946 > show #24.19 models
    46947 
    46948 > hide #24.20 models
    46949 
    46950 > show #24.20 models
    46951 
    46952 > hide #24.21 models
    46953 
    46954 > show #24.21 models
    46955 
    46956 > color #24.21 #ff7b61ff
    46957 
    46958 > color #24.21 #c7ffc7ff
    46959 
    46960 > color #24.21 #caffddff
    46961 
    46962 > color #24.21 #adffc1ff
    46963 
    46964 > hide #24.23 models
    46965 
    46966 > show #24.23 models
    46967 
    46968 > hide #24.24 models
    46969 
    46970 > show #24.24 models
    46971 
    46972 > color #24.24 #adffc1ff
    46973 
    46974 > hide #24.20 models
    46975 
    46976 > show #24.20 models
    46977 
    46978 > hide #24.15 models
    46979 
    46980 > show #24.15 models
    46981 
    46982 > color #24.15 #adffc1ff
    46983 
    46984 > hide #24.3 models
    46985 
    46986 > show #24.3 models
    46987 
    46988 > color #24.3 #adffc1ff
    46989 
    46990 > hide #24.10 models
    46991 
    46992 > show #24.10 models
    46993 
    46994 > hide #24.11 models
    46995 
    46996 > show #24.11 models
    46997 
    46998 > hide #24.12 models
    46999 
    47000 > show #24.12 models
    47001 
    47002 > color #24.12 #adffc1ff
    47003 
    47004 > color #24.9 #adffc1ff
    47005 
    47006 > color #24.6 #adffc1ff
    47007 
    47008 > hide #24.2 models
    47009 
    47010 > show #24.2 models
    47011 
    47012 > color #24.2 #4a9ed2ff
    47013 
    47014 > color #24.2 #3ab3ffff
    47015 
    47016 > color #24.2 #23a0d0ff
    47017 
    47018 > color #24.2 #1580d9ff
    47019 
    47020 > color #24.2 #2c94d9ff
    47021 
    47022 > color #24.2 #33aeffff
    47023 
    47024 > color #24.2 #2275ffff
    47025 
    47026 > color #24.2 #1c8bffff
    47027 
    47028 > color #24.2 #1886ffff
    47029 
    47030 > color #24.2 #1b7bffff
    47031 
    47032 > color #24.2 #0b6dffff
    47033 
    47034 > hide #24.5 models
    47035 
    47036 > show #24.5 models
    47037 
    47038 > hide #24.5 models
    47039 
    47040 > show #24.5 models
    47041 
    47042 > select add #24.5
    47043 
    47044 1458 atoms, 1488 bonds, 175 residues, 1 model selected 
    47045 
    47046 > hide #24.14 models
    47047 
    47048 > show #24.14 models
    47049 
    47050 > select add #24.14
    47051 
    47052 2916 atoms, 2976 bonds, 350 residues, 2 models selected 
    47053 
    47054 > hide #24.22 models
    47055 
    47056 > show #24.22 models
    47057 
    47058 > hide #24.22 models
    47059 
    47060 > show #24.22 models
    47061 
    47062 > hide #24.23 models
    47063 
    47064 > show #24.23 models
    47065 
    47066 > select add #24.23
    47067 
    47068 4374 atoms, 4464 bonds, 525 residues, 3 models selected 
    47069 
    47070 > hide #24.10 models
    47071 
    47072 > show #24.10 models
    47073 
    47074 > hide #24.11 models
    47075 
    47076 > show #24.11 models
    47077 
    47078 > select add #24.11
    47079 
    47080 5832 atoms, 5952 bonds, 700 residues, 4 models selected 
    47081 
    47082 > hide #24.1 models
    47083 
    47084 > show #24.1 models
    47085 
    47086 > select add #24.20
    47087 
    47088 7290 atoms, 7440 bonds, 875 residues, 5 models selected 
    47089 
    47090 > color sel #0b6dffff
    47091 
    47092 > select clear
    47093 
    47094 > hide #24.10 models
    47095 
    47096 > show #24.10 models
    47097 
    47098 > color #24.10 #ffc32eff
    47099 
    47100 > color #24.10 #1eddffff
    47101 
    47102 > color #24.10 #20deffff
    47103 
    47104 > color #24.10 #20e0ffff
    47105 
    47106 > select add #24.13
    47107 
    47108 1542 atoms, 1564 bonds, 189 residues, 1 model selected 
    47109 
    47110 > select add #24.19
    47111 
    47112 3084 atoms, 3128 bonds, 378 residues, 2 models selected 
    47113 
    47114 > select subtract #24.19
    47115 
    47116 1542 atoms, 1564 bonds, 189 residues, 1 model selected 
    47117 
    47118 > select add #24.19
    47119 
    47120 3084 atoms, 3128 bonds, 378 residues, 2 models selected 
    47121 
    47122 > select add #24.22
    47123 
    47124 4626 atoms, 4692 bonds, 567 residues, 3 models selected 
    47125 
    47126 > select add #24.4
    47127 
    47128 6168 atoms, 6256 bonds, 756 residues, 4 models selected 
    47129 
    47130 > select add #24.1
    47131 
    47132 7710 atoms, 7820 bonds, 945 residues, 5 models selected 
    47133 
    47134 > color sel #20e0ffff
    47135 
    47136 > select clear
    47137 
    47138 > hide #!13 models
    47139 
    47140 > select add #13
    47141 
    47142 18892 atoms, 19223 bonds, 2 pseudobonds, 2334 residues, 2 models selected 
    47143 
    47144 > show #!13 models
    47145 
    47146 > select subtract #13
    47147 
    47148 7 models selected 
    47149 
    47150 > show #!26 models
    47151 
    47152 > surface dust #9 size 21.4
    47153 
    47154 > surface dust #21 size 21.4
    47155 
    47156 > surface dust #26 size 21.4
    47157 
    47158 > hide #!26 models
    47159 
    47160 > show #!26 models
    47161 
    47162 > volume #26 level 0.001017
    47163 
    47164 > combine #24
    47165 
    47166 > hide #!24 models
    47167 
    47168 > select #9
    47169 
    47170 2 models selected 
    47171 
    47172 > select #9
    47173 
    47174 2 models selected 
    47175 
    47176 > select clear
    47177 
    47178 > select #9
    47179 
    47180 2 models selected 
    47181 
    47182 > select #9
    47183 
    47184 2 models selected 
    47185 
    47186 > select clear
    47187 
    47188 > surface dust #9 size 50
    47189 
    47190 > hide #!26 models
    47191 
    47192 > hide #!21 models
    47193 
    47194 > show #!21 models
    47195 
    47196 Segmenting Cages2.mrc, density threshold 0.001871 
    47197 Showing 18 region surfaces 
    47198 194 watershed regions, grouped to 18 regions 
    47199 Showing Cages2.seg - 18 regions, 18 surfaces 
    47200 
    47201 > select #25.7
    47202 
    47203 1 model selected 
    47204 
    47205 > select add #25.17
    47206 
    47207 2 models selected 
    47208 
    47209 > select add #25.12
    47210 
    47211 3 models selected 
    47212 Opened Cages2_imasked as #28, grid size 200,200,200, pixel 2.14, shown at step
    47213 1, values float32 
    47214 
    47215 The cached device pixel ratio value was stale on window expose. Please file a
    47216 QTBUG which explains how to reproduce. 
    47217 
    47218 > save /Users/shoichitachiyama/Desktop/Polished_Cage2.mrc models #28
    47219 
    47220 > select clear
    47221 
    47222 > hide #!25 models
    47223 
    47224 > hide #!21 models
    47225 
    47226 > volume gaussian #28 sDev 2
    47227 
    47228 Opened Polished_Cage2.mrc gaussian as #30, grid size 200,200,200, pixel 2.14,
    47229 shown at step 1, values float32 
    47230 
    47231 > color #30 #c0c0c080 models
    47232 
    47233 > hide #27 models
    47234 
    47235 > show #!24 models
    47236 
    47237 > select add #24.1
    47238 
    47239 1542 atoms, 1564 bonds, 189 residues, 1 model selected 
    47240 
    47241 > select subtract #24.1
    47242 
    47243 Nothing selected 
    47244 
    47245 > hide #24.1 models
    47246 
    47247 > show #24.1 models
    47248 
    47249 > hide #24.14 models
    47250 
    47251 > show #24.14 models
    47252 
    47253 > hide #24.4 models
    47254 
    47255 > hide #24.5 models
    47256 
    47257 > hide #24.6 models
    47258 
    47259 > hide #24.9 models
    47260 
    47261 > show #!29 models
    47262 
    47263 > select add #29
    47264 
    47265 2 models selected 
    47266 
    47267 > select subtract #29
    47268 
    47269 Nothing selected 
    47270 
    47271 > hide #!29 models
    47272 
    47273 > show #!26 models
    47274 
    47275 > save /Users/shoichitachiyama/Desktop/For_PflCD.cxs includeMaps true
    47276 
    47277 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    47278 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    47279 > refinment/For-Chimera-PflAB/Resegment/Part3/IM2.mrc"
    47280 
    47281 Opened IM2.mrc as #31, grid size 200,200,200, pixel 2.14, shown at level
    47282 0.0151, step 1, values float32 
    47283 
    47284 > volume #31 level 0.001791
    47285 
    47286 Segmenting IM2.mrc, density threshold 0.001791 
    47287 Showing 76 region surfaces 
    47288 1167 watershed regions, grouped to 76 regions 
    47289 Showing IM2.seg - 76 regions, 76 surfaces 
    47290 
    47291 > select #25.71
    47292 
    47293 1 model selected 
    47294 
    47295 > select add #25.36
    47296 
    47297 2 models selected 
    47298 
    47299 > select add #25.19
    47300 
    47301 3 models selected 
    47302 
    47303 > select add #25.4
    47304 
    47305 4 models selected 
    47306 
    47307 > select add #25.26
    47308 
    47309 5 models selected 
    47310 
    47311 > select add #25.2
    47312 
    47313 6 models selected 
    47314 
    47315 > select add #25.14
    47316 
    47317 7 models selected 
    47318 
    47319 > select add #25.3
    47320 
    47321 8 models selected 
    47322 
    47323 > select add #25.13
    47324 
    47325 9 models selected 
    47326 
    47327 > select add #25.32
    47328 
    47329 10 models selected 
    47330 
    47331 > select add #25.39
    47332 
    47333 11 models selected 
    47334 
    47335 > select add #25.10
    47336 
    47337 12 models selected 
    47338 
    47339 > select add #25.8
    47340 
    47341 13 models selected 
    47342 
    47343 > select add #25.18
    47344 
    47345 14 models selected 
    47346 
    47347 > select add #25.34
    47348 
    47349 15 models selected 
    47350 
    47351 > select add #25.47
    47352 
    47353 16 models selected 
    47354 
    47355 > select add #25.16
    47356 
    47357 17 models selected 
    47358 
    47359 > select add #25.20
    47360 
    47361 18 models selected 
    47362 
    47363 > select add #25.28
    47364 
    47365 19 models selected 
    47366 
    47367 > select add #25.69
    47368 
    47369 20 models selected 
    47370 
    47371 > select add #25.30
    47372 
    47373 21 models selected 
    47374 
    47375 > select add #25.49
    47376 
    47377 22 models selected 
    47378 
    47379 > select add #25.27
    47380 
    47381 23 models selected 
    47382 
    47383 > select add #25.53
    47384 
    47385 24 models selected 
    47386 
    47387 > select add #25.68
    47388 
    47389 25 models selected 
    47390 
    47391 > select add #25.7
    47392 
    47393 26 models selected 
    47394 
    47395 > select add #25.1
    47396 
    47397 27 models selected 
    47398 
    47399 > hide #!31 models
    47400 
    47401 > select add #25.42
    47402 
    47403 28 models selected 
    47404 
    47405 > select add #25.76
    47406 
    47407 29 models selected 
    47408 
    47409 > select add #25.52
    47410 
    47411 30 models selected 
    47412 
    47413 > select add #25.29
    47414 
    47415 31 models selected 
    47416 
    47417 > select add #25.57
    47418 
    47419 32 models selected 
    47420 
    47421 > select add #25.9
    47422 
    47423 33 models selected 
    47424 
    47425 > select add #25.60
    47426 
    47427 34 models selected 
    47428 
    47429 > select add #25.43
    47430 
    47431 35 models selected 
    47432 
    47433 > select add #25.72
    47434 
    47435 36 models selected 
    47436 
    47437 > select add #25.73
    47438 
    47439 37 models selected 
    47440 
    47441 > select add #25.21
    47442 
    47443 38 models selected 
    47444 
    47445 > select add #25.50
    47446 
    47447 39 models selected 
    47448 
    47449 > select add #25.40
    47450 
    47451 40 models selected 
    47452 
    47453 > select add #25.37
    47454 
    47455 41 models selected 
    47456 
    47457 > select add #25.38
    47458 
    47459 42 models selected 
    47460 
    47461 > select add #25.33
    47462 
    47463 43 models selected 
    47464 
    47465 > select add #25.70
    47466 
    47467 44 models selected 
    47468 
    47469 > select add #25.61
    47470 
    47471 45 models selected 
    47472 
    47473 > select add #25.46
    47474 
    47475 46 models selected 
    47476 
    47477 > select add #25.62
    47478 
    47479 47 models selected 
    47480 
    47481 > select add #25.75
    47482 
    47483 48 models selected 
    47484 
    47485 > select add #25.74
    47486 
    47487 49 models selected 
    47488 
    47489 > select add #25.17
    47490 
    47491 50 models selected 
    47492 
    47493 > select add #25.41
    47494 
    47495 51 models selected 
    47496 
    47497 > select add #25.65
    47498 
    47499 52 models selected 
    47500 
    47501 > select add #25.12
    47502 
    47503 53 models selected 
    47504 
    47505 > select add #25.22
    47506 
    47507 54 models selected 
    47508 
    47509 > select add #25.15
    47510 
    47511 55 models selected 
    47512 
    47513 > select add #25.35
    47514 
    47515 56 models selected 
    47516 
    47517 > select add #25.45
    47518 
    47519 57 models selected 
    47520 
    47521 > select add #25.5
    47522 
    47523 58 models selected 
    47524 
    47525 > select add #25.66
    47526 
    47527 59 models selected 
    47528 
    47529 > select add #25.6
    47530 
    47531 60 models selected 
    47532 
    47533 > select add #25.51
    47534 
    47535 61 models selected 
    47536 
    47537 > select add #25.23
    47538 
    47539 62 models selected 
    47540 Grouped 62 regions 
    47541 Opened IM2_imasked as #32, grid size 200,200,200, pixel 2.14, shown at step 1,
    47542 values float32 
    47543 Segmenting IM2_imasked, density threshold 0.001791 
    47544 Showing 14 region surfaces 
    47545 133 watershed regions, grouped to 14 regions 
    47546 Showing IM2_imasked.seg - 14 regions, 14 surfaces 
    47547 
    47548 > hide #!25 models
    47549 
    47550 > volume #32 level 0.001462
    47551 
    47552 The cached device pixel ratio value was stale on window expose. Please file a
    47553 QTBUG which explains how to reproduce. 
    47554 
    47555 > save /Users/shoichitachiyama/Desktop/Polished-IM2.mrc models #32
    47556 
    47557 > close #31
    47558 
    47559 > volume gaussian #32 sDev 8
    47560 
    47561 Opened Polished-IM2.mrc gaussian as #31, grid size 200,200,200, pixel 2.14,
    47562 shown at step 1, values float32 
    47563 
    47564 > close #31
    47565 
    47566 > volume gaussian #32 sDev 6
    47567 
    47568 Opened Polished-IM2.mrc gaussian as #31, grid size 200,200,200, pixel 2.14,
    47569 shown at step 1, values float32 
    47570 
    47571 > close #30
    47572 
    47573 > show #!28 models
    47574 
    47575 > volume gaussian #28 sDev 2
    47576 
    47577 Opened Polished_Cage2.mrc gaussian as #30, grid size 200,200,200, pixel 2.14,
    47578 shown at step 1, values float32 
    47579 
    47580 > color #30 #c0c0c080 models
    47581 
    47582 > close #31
    47583 
    47584 > volume gaussian #32 sDev 4
    47585 
    47586 Opened Polished-IM2.mrc gaussian as #31, grid size 200,200,200, pixel 2.14,
    47587 shown at step 1, values float32 
    47588 
    47589 > surface dust #31 size 50
    47590 
    47591 > color #31 #c0c0c080 models
    47592 
    47593 > save /Users/shoichitachiyama/Desktop/For_PflCD.cxs includeMaps true
    47594 
    47595 > hide #24.1 models
    47596 
    47597 > show #24.1 models
    47598 
    47599 > hide #24.1 models
    47600 
    47601 > show #24.1 models
    47602 
    47603 > hide #!24 models
    47604 
    47605 > show #27 models
    47606 
    47607 > hide #27 models
    47608 
    47609 > show #27 models
    47610 
    47611 > hide #27 models
    47612 
    47613 > show #!24 models
    47614 
    47615 > hide #24.1 models
    47616 
    47617 > show #24.1 models
    47618 
    47619 > hide #24.1 models
    47620 
    47621 > hide #24.2 models
    47622 
    47623 > hide #24.3 models
    47624 
    47625 > show #24.3 models
    47626 
    47627 > show #24.2 models
    47628 
    47629 > show #24.1 models
    47630 
    47631 > hide #!24 models
    47632 
    47633 > select add #24
    47634 
    47635 46256 atoms, 47176 bonds, 5632 residues, 29 models selected 
    47636 
    47637 > select subtract #24
    47638 
    47639 Nothing selected 
    47640 
    47641 > show #!24 models
    47642 
    47643 > hide #!24 models
    47644 
    47645 > show #!24 models
    47646 
    47647 > hide #!30 models
    47648 
    47649 > show #!30 models
    47650 
    47651 > hide #!30 models
    47652 
    47653 > hide #!31 models
    47654 
    47655 > show #!31 models
    47656 
    47657 > show #!30 models
    47658 
    47659 > hide #!26 models
    47660 
    47661 > show #!26 models
    47662 
    47663 Segmenting Polished-PflCD.mrc gaussian, density threshold 0.001017 
    47664 Showing 6 region surfaces 
    47665 70 watershed regions, grouped to 6 regions 
    47666 Showing Polished-PflCD gaussian.seg - 6 regions, 6 surfaces 
    47667 
    47668 > select #25.5
    47669 
    47670 1 model selected 
    47671 
    47672 > select add #25.2
    47673 
    47674 2 models selected 
    47675 
    47676 > select add #25.4
    47677 
    47678 3 models selected 
    47679 
    47680 > select add #25.3
    47681 
    47682 4 models selected 
    47683 Opened Polished-PflCD_imasked as #33, grid size 200,200,200, pixel 2.14, shown
    47684 at step 1, values float32 
    47685 
    47686 The cached device pixel ratio value was stale on window expose. Please file a
    47687 QTBUG which explains how to reproduce. 
    47688 
    47689 > save /Users/shoichitachiyama/Desktop/Polished-PflCD_single.mrc models #33
    47690 
    47691 > hide #!25 models
    47692 
    47693 > hide #!30 models
    47694 
    47695 > show #!30 models
    47696 
    47697 > hide #!30 models
    47698 
    47699 > show #!30 models
    47700 
    47701 > hide #!30 models
    47702 
    47703 > show #!30 models
    47704 
    47705 > hide #!30 models
    47706 
    47707 > show #!30 models
    47708 
    47709 Segmenting Polished_Cage2.mrc gaussian, density threshold 0.001839 
    47710 Showing 14 region surfaces 
    47711 88 watershed regions, grouped to 14 regions 
    47712 Showing Polished_Cage2 gaussian.seg - 14 regions, 14 surfaces 
    47713 
    47714 > select #25.1
    47715 
    47716 1 model selected 
    47717 Opened Polished_Cage2_imasked as #34, grid size 200,200,200, pixel 2.14, shown
    47718 at step 1, values float32 
    47719 
    47720 The cached device pixel ratio value was stale on window expose. Please file a
    47721 QTBUG which explains how to reproduce. 
    47722 
    47723 > save /Users/shoichitachiyama/Desktop/Single-Cage.mrc models #34
    47724 
    47725 > select clear
    47726 
    47727 > select #25.1
    47728 
    47729 1 model selected 
    47730 
    47731 > select add #25.10
    47732 
    47733 2 models selected 
    47734 
    47735 > select add #25.12
    47736 
    47737 3 models selected 
    47738 
    47739 > select add #25.6
    47740 
    47741 4 models selected 
    47742 Opened Polished_Cage2_imasked as #35, grid size 200,200,200, pixel 2.14, shown
    47743 at step 1, values float32 
    47744 
    47745 The cached device pixel ratio value was stale on window expose. Please file a
    47746 QTBUG which explains how to reproduce. 
    47747 
    47748 > save /Users/shoichitachiyama/Desktop/Single-Cage-arch.mrc models #35
    47749 
    47750 > save /Users/shoichitachiyama/Desktop/For_PflCD.cxs includeMaps true
    47751 
    47752 ——— End of log from Fri Jul 11 22:22:46 2025 ———
    47753 
    47754 opened ChimeraX session 
    47755 Showing Polished_Cage2 gaussian.seg - 14 regions, 14 surfaces 
    47756 
    47757 > hide #!25 models
    47758 
    47759 > hide #!35 models
    47760 
    47761 > hide #!34 models
    47762 
    47763 > hide #!33 models
    47764 
    47765 > show #!33 models
    47766 
    47767 > hide #!33 models
    47768 
    47769 > hide #!31 models
    47770 
    47771 > hide #!30 models
    47772 
    47773 > show #!30 models
    47774 
    47775 > hide #!30 models
    47776 
    47777 > hide #!26 models
    47778 
    47779 > hide #!24 models
    47780 
    47781 > show #!24 models
    47782 
    47783 > show #!33 models
    47784 
    47785 > hide #!33 models
    47786 
    47787 > show #!33 models
    47788 
    47789 > hide #!33 models
    47790 
    47791 > show #!34 models
    47792 
    47793 > hide #!34 models
    47794 
    47795 > select add #24.19
    47796 
    47797 1542 atoms, 1564 bonds, 189 residues, 1 model selected 
    47798 
    47799 > select subtract #24.19
    47800 
    47801 Nothing selected 
    47802 
    47803 > select add #24.20
    47804 
    47805 1458 atoms, 1488 bonds, 175 residues, 1 model selected 
    47806 
    47807 > select subtract #24.20
    47808 
    47809 Nothing selected 
    47810 
    47811 > select add #24.11
    47812 
    47813 1458 atoms, 1488 bonds, 175 residues, 1 model selected 
    47814 
    47815 > select subtract #24.11
    47816 
    47817 Nothing selected 
    47818 
    47819 > select add #24.1
    47820 
    47821 1542 atoms, 1564 bonds, 189 residues, 1 model selected 
    47822 
    47823 > select subtract #24.1
    47824 
    47825 Nothing selected 
    47826 
    47827 > select add #24.13
    47828 
    47829 1542 atoms, 1564 bonds, 189 residues, 1 model selected 
    47830 
    47831 > select subtract #24.13
    47832 
    47833 Nothing selected 
    47834 
    47835 > select add #24.10
    47836 
    47837 1542 atoms, 1564 bonds, 189 residues, 1 model selected 
    47838 
    47839 > select add #24.11
    47840 
    47841 3000 atoms, 3052 bonds, 364 residues, 2 models selected 
    47842 
    47843 > select subtract #24.11
    47844 
    47845 1542 atoms, 1564 bonds, 189 residues, 1 model selected 
    47846 
    47847 > select subtract #24.10
    47848 
    47849 Nothing selected 
    47850 
    47851 > select add #24.22
    47852 
    47853 1542 atoms, 1564 bonds, 189 residues, 1 model selected 
    47854 
    47855 > select add #24.23
    47856 
    47857 3000 atoms, 3052 bonds, 364 residues, 2 models selected 
    47858 
    47859 > select add #24.24
    47860 
    47861 4355 atoms, 4440 bonds, 526 residues, 3 models selected 
    47862 
    47863 > mlp sel
    47864 
    47865 Map values for surface "Cage-PflCD.pdb_V SES surface": minimum -25.84, mean
    47866 -2.565, maximum 23.8 
    47867 Map values for surface "Cage-PflCD.pdb_X SES surface": minimum -25.94, mean
    47868 -2.294, maximum 23.72 
    47869 Map values for surface "Cage-PflCD.pdb_W SES surface": minimum -28.76, mean
    47870 -1.748, maximum 22.7 
    47871 To also show corresponding color key, enter the above mlp command and add key
    47872 true 
    47873 
    47874 > hide sel surfaces
    47875 
    47876 [Repeated 1 time(s)]
    47877 
    47878 > show sel surfaces
    47879 
    47880 > hide sel surfaces
    47881 
    47882 > select clear
    47883 
    47884 [Repeated 2 time(s)]Drag select of 127 residues 
    47885 
    47886 > hide sel cartoons
    47887 
    47888 > hide #!13 models
    47889 
    47890 > hide #!9 models
    47891 
    47892 Drag select of 432 residues 
    47893 
    47894 > select clear
    47895 
    47896 Drag select of 910 residues 
    47897 
    47898 > select add #24.1
    47899 
    47900 8516 atoms, 1564 bonds, 1043 residues, 10 models selected 
    47901 
    47902 > select subtract #24.1
    47903 
    47904 6974 atoms, 854 residues, 9 models selected 
    47905 
    47906 > select add #24.2
    47907 
    47908 7866 atoms, 1488 bonds, 959 residues, 9 models selected 
    47909 
    47910 > select subtract #24.2
    47911 
    47912 6408 atoms, 784 residues, 8 models selected 
    47913 
    47914 > select add #24.3
    47915 
    47916 7528 atoms, 1388 bonds, 917 residues, 8 models selected 
    47917 
    47918 > select subtract #24.3
    47919 
    47920 6173 atoms, 755 residues, 7 models selected 
    47921 
    47922 > save /Users/shoichitachiyama/Desktop/Single_unit_cage-PflCD.pdb selectedOnly
    47923 > true
    47924 
    47925 > show #!35 models
    47926 
    47927 > select clear
    47928 
    47929 > select add #24.22
    47930 
    47931 1542 atoms, 1564 bonds, 189 residues, 1 model selected 
    47932 
    47933 > select add #24.23
    47934 
    47935 3000 atoms, 3052 bonds, 364 residues, 3 models selected 
    47936 
    47937 > select add #24.24
    47938 
    47939 4355 atoms, 4440 bonds, 526 residues, 5 models selected 
    47940 
    47941 > select add #24.28
    47942 
    47943 7209 atoms, 7354 bonds, 882 residues, 7 models selected 
    47944 
    47945 > show sel cartoons
    47946 
    47947 > select clear
    47948 
    47949 Drag select of 152 residues 
    47950 
    47951 > hide sel cartoons
    47952 
    47953 Drag select of 139 residues, 35 Single-Cage-arch.mrc 
    47954 
    47955 > hide sel cartoons
    47956 
    47957 > hide #!35 models
    47958 
    47959 Drag select of 1112 residues 
    47960 
    47961 > select add #24.1
    47962 
    47963 11927 atoms, 1564 bonds, 1457 residues, 13 models selected 
    47964 
    47965 > select subtract #24.1
    47966 
    47967 10385 atoms, 1268 residues, 12 models selected 
    47968 
    47969 > select add #24.2
    47970 
    47971 10747 atoms, 1488 bonds, 1310 residues, 12 models selected 
    47972 
    47973 > select subtract #24.2
    47974 
    47975 9289 atoms, 1135 residues, 11 models selected 
    47976 
    47977 > select add #24.3
    47978 
    47979 9800 atoms, 1388 bonds, 1196 residues, 11 models selected 
    47980 
    47981 > select subtract #24.3
    47982 
    47983 8445 atoms, 1034 residues, 10 models selected 
    47984 
    47985 > select clear
    47986 
    47987 Drag select of 934 residues 
    47988 
    47989 > select add #24.1
    47990 
    47991 8558 atoms, 1564 bonds, 1046 residues, 10 models selected 
    47992 
    47993 > select subtract #24.1
    47994 
    47995 7016 atoms, 857 residues, 9 models selected 
    47996 
    47997 > select add #24.2
    47998 
    47999 7789 atoms, 1488 bonds, 949 residues, 9 models selected 
    48000 
    48001 > select subtract #24.2
    48002 
    48003 6331 atoms, 774 residues, 8 models selected 
    48004 
    48005 > select add #24.3
    48006 
    48007 7433 atoms, 1388 bonds, 905 residues, 8 models selected 
    48008 
    48009 > select subtract #24.3
    48010 
    48011 6078 atoms, 743 residues, 7 models selected 
    48012 Drag select of 374 residues 
    48013 
    48014 > save /Users/shoichitachiyama/Desktop/Single_unit_cage-PflCD.pdb selectedOnly
    48015 > true
    48016 
    48017 > select clear
    48018 
    48019 > hide #!24 models
    48020 
    48021 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    48022 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    48023 > refinment/For-PflCD/For_correlation/Single_unit_cage-PflCD.pdb"
    48024 
    48025 Chain information for Single_unit_cage-PflCD.pdb 
    48026 --- 
    48027 Chain | Description 
    48028 36.1/J | No description available 
    48029 36.2/K | No description available 
    48030 36.3/L | No description available 
    48031 36.4/V | No description available 
    48032 36.5/W | No description available 
    48033 36.6/X | No description available 
    48034 36.7/c | No description available 
    48035  
    48036 
    48037 Cell requested for row 23 is out of bounds for table with 63 rows! Resizing
    48038 table model. 
    48039 
    48040 > show #!33 models
    48041 
    48042 > select add #36.6
    48043 
    48044 1094 atoms, 1122 bonds, 130 residues, 1 model selected 
    48045 
    48046 > select subtract #36.6
    48047 
    48048 Nothing selected 
    48049 
    48050 > hide #36.1 models
    48051 
    48052 > hide #36.2 models
    48053 
    48054 > hide #36.3 models
    48055 
    48056 > hide #36.4 models
    48057 
    48058 > hide #36.5 models
    48059 
    48060 > select add #36.6
    48061 
    48062 1094 atoms, 1122 bonds, 130 residues, 1 model selected 
    48063 Alignment identifier is 36.6/X 
    48064 
    48065 > select clear
    48066 
    48067 > select #36.6/X:33
    48068 
    48069 8 atoms, 7 bonds, 1 residue, 1 model selected 
    48070 
    48071 > select #36.6/X:33-90
    48072 
    48073 482 atoms, 496 bonds, 58 residues, 1 model selected 
    48074 
    48075 > hide sel cartoons
    48076 
    48077 > hide #!33 models
    48078 
    48079 > select clear
    48080 
    48081 [Repeated 1 time(s)]Drag select of 428 residues 
    48082 
    48083 > save /Users/shoichitachiyama/Desktop/PflC-PflD_correlation.pdb selectedOnly
    48084 > true
    48085 
    48086 > select clear
    48087 
    48088 [Repeated 1 time(s)]
    48089 
    48090 > show #!33 models
    48091 
    48092 > hide #!36 models
    48093 
    48094 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    48095 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    48096 > refinment/For-PflCD/For_correlation/PflC-PflD_correlation.pdb"
    48097 
    48098 Chain information for PflC-PflD_correlation.pdb 
    48099 --- 
    48100 Chain | Description 
    48101 37.1/X | No description available 
    48102 37.2/c | No description available 
    48103  
    48104 
    48105 > combine #37
    48106 
    48107 > ui tool show "Fit in Map"
    48108 
    48109 > hide #!37 models
    48110 
    48111 > show #!37 models
    48112 
    48113 The cached device pixel ratio value was stale on window expose. Please file a
    48114 QTBUG which explains how to reproduce. 
    48115 
    48116 [Repeated 1 time(s)]Opened combination map 10 as #39, grid size 42,39,48,
    48117 pixel 3.33, shown at level 0.0506, step 1, values float32 
    48118 
    48119 > fitmap #38 inMap #33 resolution 10 metric correlation
    48120 
    48121 Fit map combination map 10 in map Polished-PflCD_single.mrc using 2607 points 
    48122 correlation = 0.8562, correlation about mean = 0.4646, overlap = 17.28 
    48123 steps = 80, shift = 4.98, angle = 8.4 degrees 
    48124  
    48125 Position of combination map 10 (#39) relative to Polished-PflCD_single.mrc
    48126 (#33) coordinates: 
    48127 Matrix rotation and translation 
    48128 0.99274857 -0.11124388 0.04555301 8.94210763 
    48129 0.11465872 0.99010784 -0.08086926 -6.41782952 
    48130 -0.03610619 0.08550589 0.99568323 -5.68708707 
    48131 Axis 0.56938774 0.27946328 0.77310923 
    48132 Axis point 60.37593490 82.07118066 0.00000000 
    48133 Rotation angle (degrees) 8.40098598 
    48134 Shift along axis -1.09876073 
    48135  
    48136 Average map value = 0.02984 for 3466 atoms, 138 outside contour 
    48137 
    48138 > hide #!37 models
    48139 
    48140 > split #38
    48141 
    48142 Split combination (#38) into 2 models 
    48143 Chain information for combination X #38.1 
    48144 --- 
    48145 Chain | Description 
    48146 X | No description available 
    48147  
    48148 Chain information for combination c #38.2 
    48149 --- 
    48150 Chain | Description 
    48151 c | No description available 
    48152  
    48153 
    48154 > select add #38.2
    48155 
    48156 2854 atoms, 2914 bonds, 356 residues, 1 model selected 
    48157 
    48158 > color sel #7b80ffff
    48159 
    48160 > select subtract #38.2
    48161 
    48162 Nothing selected 
    48163 
    48164 > select add #38.1
    48165 
    48166 612 atoms, 625 bonds, 72 residues, 1 model selected 
    48167 
    48168 > color sel #adffc1ff
    48169 
    48170 > select clear
    48171 
    48172 > volume #33 level 0.008475
    48173 
    48174 > volume #33 level 0.00102
    48175 
    48176 > save /Users/shoichitachiyama/Desktop/PflC-PflD.png supersample 2
    48177 > transparentBackground true
    48178 
    48179 > hide #!38 models
    48180 
    48181 > hide #!33 models
    48182 
    48183 > show #!33 models
    48184 
    48185 > hide #!33 models
    48186 
    48187 > show #!34 models
    48188 
    48189 > show #!35 models
    48190 
    48191 > hide #!34 models
    48192 
    48193 > show #!38 models
    48194 
    48195 > hide #!38 models
    48196 
    48197 > show #!38 models
    48198 
    48199 > hide #!38 models
    48200 
    48201 > show #!38 models
    48202 
    48203 > show #!37 models
    48204 
    48205 > hide #!37 models
    48206 
    48207 > show #!36 models
    48208 
    48209 > hide #36.6 models
    48210 
    48211 > hide #36.7 models
    48212 
    48213 > hide #!38 models
    48214 
    48215 > show #36.1 models
    48216 
    48217 > show #36.2 models
    48218 
    48219 > show #36.3 models
    48220 
    48221 > show #36.4 models
    48222 
    48223 > show #36.5 models
    48224 
    48225 > select add #36.1
    48226 
    48227 1021 atoms, 1038 bonds, 123 residues, 1 model selected 
    48228 
    48229 > select add #36.2
    48230 
    48231 2052 atoms, 2085 bonds, 247 residues, 2 models selected 
    48232 
    48233 > select add #36.3
    48234 
    48235 3119 atoms, 3179 bonds, 374 residues, 3 models selected 
    48236 
    48237 > select add #36.4
    48238 
    48239 4182 atoms, 4259 bonds, 502 residues, 4 models selected 
    48240 
    48241 > select add #36.5
    48242 
    48243 5249 atoms, 5342 bonds, 631 residues, 5 models selected 
    48244 
    48245 > save /Users/shoichitachiyama/Desktop/Cage_arch_single.pdb selectedOnly true
    48246 
    48247 > select clear
    48248 
    48249 [Repeated 1 time(s)]
    48250 
    48251 > hide #!36 models
    48252 
    48253 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    48254 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    48255 > refinment/For-PflCD/For_correlation/Cage_arch_single.pdb"
    48256 
    48257 Summary of feedback from opening /Volumes/Lab Backup/Jun Liu Lab 2025/Project
    48258 files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-refinment/For-
    48259 PflCD/For_correlation/Cage_arch_single.pdb 
    48260 --- 
    48261 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    48262 Start residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1
    48263 42 
    48264 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    48265 8 
    48266 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    48267 1 7 
    48268 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    48269 1 3 
    48270 150 messages similar to the above omitted 
    48271  
    48272 Chain information for Cage_arch_single.pdb 
    48273 --- 
    48274 Chain | Description 
    48275 40.1/J | No description available 
    48276 40.2/K | No description available 
    48277 40.3/L | No description available 
    48278 40.4/V | No description available 
    48279 40.5/W | No description available 
    48280  
    48281 
    48282 Cell requested for row 35 is out of bounds for table with 46 rows! Resizing
    48283 table model. 
    48284 
    48285 > show #!24 models
    48286 
    48287 > hide #40.1 models
    48288 
    48289 > show #40.1 models
    48290 
    48291 > hide #40.1 models
    48292 
    48293 > show #40.1 models
    48294 
    48295 > color #40.1 #20e0ffff
    48296 
    48297 > hide #40.4 models
    48298 
    48299 > show #40.4 models
    48300 
    48301 > color #40.4 #20e0ffff
    48302 
    48303 > hide #40.2 models
    48304 
    48305 > show #40.2 models
    48306 
    48307 > color #40.2 #0b6dffff
    48308 
    48309 > color #40.5 #0b6dffff
    48310 
    48311 > color #40.3 #adffc1ff
    48312 
    48313 > hide #!24 models
    48314 
    48315 > combine #40
    48316 
    48317 > hide #!40 models
    48318 
    48319 Opened combination map 10 as #42, grid size 38,53,56, pixel 3.33, shown at
    48320 level 0.0458, step 1, values float32 
    48321 
    48322 > fitmap #41 inMap #35 resolution 10 metric correlation
    48323 
    48324 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    48325 correlation = 0.7956, correlation about mean = 0.4574, overlap = 26.74 
    48326 steps = 72, shift = 5.32, angle = 3.33 degrees 
    48327  
    48328 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    48329 coordinates: 
    48330 Matrix rotation and translation 
    48331 0.99870695 -0.04614412 -0.02133420 10.32762731 
    48332 0.04672537 0.99852640 0.02760031 -26.24679973 
    48333 0.02002917 -0.02856147 0.99939135 -1.58990356 
    48334 Axis -0.48354610 -0.35613357 0.79959493 
    48335 Axis point 545.82748063 240.81579688 0.00000000 
    48336 Rotation angle (degrees) 3.32920138 
    48337 Shift along axis 3.08220380 
    48338  
    48339 Average map value = 0.03088 for 5249 atoms, 746 outside contour 
    48340 
    48341 > fitmap #41 inMap #35 resolution 10 metric correlation
    48342 
    48343 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    48344 correlation = 0.7956, correlation about mean = 0.4572, overlap = 26.75 
    48345 steps = 48, shift = 0.05, angle = 0.0501 degrees 
    48346  
    48347 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    48348 coordinates: 
    48349 Matrix rotation and translation 
    48350 0.99873977 -0.04552554 -0.02112587 10.16347165 
    48351 0.04608967 0.99857148 0.02703206 -25.86218474 
    48352 0.01986504 -0.02797168 0.99941131 -1.65252969 
    48353 Axis -0.48058800 -0.35815276 0.80047596 
    48354 Axis point 544.83671207 240.41933412 0.00000000 
    48355 Rotation angle (degrees) 3.28056932 
    48356 Shift along axis 3.05535998 
    48357  
    48358 Average map value = 0.03088 for 5249 atoms, 743 outside contour 
    48359 
    48360 > fitmap #41 inMap #35 resolution 10 metric correlation
    48361 
    48362 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    48363 correlation = 0.7956, correlation about mean = 0.4574, overlap = 26.74 
    48364 steps = 28, shift = 0.0466, angle = 0.0465 degrees 
    48365  
    48366 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    48367 coordinates: 
    48368 Matrix rotation and translation 
    48369 0.99871133 -0.04607228 -0.02128416 10.30393269 
    48370 0.04665207 0.99852989 0.02759786 -26.21997239 
    48371 0.01998138 -0.02855525 0.99939249 -1.57782840 
    48372 Axis -0.48411769 -0.35576619 0.79941259 
    48373 Axis point 546.14127084 240.71974845 0.00000000 
    48374 Rotation angle (degrees) 3.32475180 
    48375 Shift along axis 3.07852771 
    48376  
    48377 Average map value = 0.03088 for 5249 atoms, 746 outside contour 
    48378 
    48379 > fitmap #41 inMap #35 resolution 10 metric correlation
    48380 
    48381 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    48382 correlation = 0.7956, correlation about mean = 0.4572, overlap = 26.74 
    48383 steps = 28, shift = 0.0332, angle = 0.0229 degrees 
    48384  
    48385 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    48386 coordinates: 
    48387 Matrix rotation and translation 
    48388 0.99871967 -0.04586270 -0.02134548 10.28568035 
    48389 0.04643765 0.99854895 0.02726791 -26.04076667 
    48390 0.02006392 -0.02822424 0.99940024 -1.66680369 
    48391 Axis -0.48093447 -0.35888334 0.79994049 
    48392 Axis point 544.61451298 241.21362930 0.00000000 
    48393 Rotation angle (degrees) 3.30734490 
    48394 Shift along axis 3.06551528 
    48395  
    48396 Average map value = 0.03088 for 5249 atoms, 745 outside contour 
    48397 
    48398 > fitmap #41 inMap #35 resolution 10 metric correlation
    48399 
    48400 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    48401 correlation = 0.7956, correlation about mean = 0.4572, overlap = 26.75 
    48402 steps = 44, shift = 0.0078, angle = 0.0237 degrees 
    48403  
    48404 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    48405 coordinates: 
    48406 Matrix rotation and translation 
    48407 0.99873362 -0.04569750 -0.02104485 10.17702551 
    48408 0.04625949 0.99856342 0.02704007 -25.92640893 
    48409 0.01977895 -0.02797935 0.99941280 -1.62205828 
    48410 Axis -0.47979568 -0.35600312 0.80190890 
    48411 Axis point 544.45356004 239.59996732 0.00000000 
    48412 Rotation angle (degrees) 3.28693076 
    48413 Shift along axis 3.04624646 
    48414  
    48415 Average map value = 0.03088 for 5249 atoms, 743 outside contour 
    48416 
    48417 > fitmap #41 inMap #35 resolution 10 metric correlation
    48418 
    48419 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    48420 correlation = 0.7956, correlation about mean = 0.4572, overlap = 26.74 
    48421 steps = 40, shift = 0.00396, angle = 0.0133 degrees 
    48422  
    48423 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    48424 coordinates: 
    48425 Matrix rotation and translation 
    48426 0.99873019 -0.04569884 -0.02120454 10.21608250 
    48427 0.04626865 0.99855842 0.02720834 -25.97226518 
    48428 0.01993058 -0.02815489 0.99940486 -1.63858169 
    48429 Axis -0.48159776 -0.35782929 0.80001362 
    48430 Axis point 545.14877699 240.68089744 0.00000000 
    48431 Rotation angle (degrees) 3.29510322 
    48432 Shift along axis 3.06270699 
    48433  
    48434 Average map value = 0.03088 for 5249 atoms, 745 outside contour 
    48435 
    48436 > fitmap #41 inMap #35 resolution 10 metric correlation
    48437 
    48438 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    48439 correlation = 0.7956, correlation about mean = 0.4574, overlap = 26.74 
    48440 steps = 40, shift = 0.0295, angle = 0.00651 degrees 
    48441  
    48442 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    48443 coordinates: 
    48444 Matrix rotation and translation 
    48445 0.99872620 -0.04579540 -0.02118378 10.21798131 
    48446 0.04636569 0.99855244 0.02726245 -26.04302015 
    48447 0.01990463 -0.02820992 0.99940383 -1.61465143 
    48448 Axis -0.48174761 -0.35683070 0.80036935 
    48449 Axis point 545.50113893 240.33009133 0.00000000 
    48450 Rotation angle (degrees) 3.30057793 
    48451 Shift along axis 3.07814345 
    48452  
    48453 Average map value = 0.03088 for 5249 atoms, 746 outside contour 
    48454 
    48455 > fitmap #41 inMap #35 resolution 10 metric correlation
    48456 
    48457 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    48458 correlation = 0.7956, correlation about mean = 0.4572, overlap = 26.75 
    48459 steps = 44, shift = 0.0312, angle = 0.0124 degrees 
    48460  
    48461 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    48462 coordinates: 
    48463 Matrix rotation and translation 
    48464 0.99873308 -0.04567366 -0.02112243 10.19099109 
    48465 0.04623894 0.99856284 0.02709625 -25.93458566 
    48466 0.01985449 -0.02803860 0.99940964 -1.63536141 
    48467 Axis -0.48049038 -0.35710648 0.80100184 
    48468 Axis point 544.75360054 240.15232394 0.00000000 
    48469 Rotation angle (degrees) 3.28906721 
    48470 Shift along axis 3.05480800 
    48471  
    48472 Average map value = 0.03088 for 5249 atoms, 744 outside contour 
    48473 
    48474 > fitmap #41 inMap #35 resolution 10 metric correlation
    48475 
    48476 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    48477 correlation = 0.7956, correlation about mean = 0.4574, overlap = 26.74 
    48478 steps = 72, shift = 5.32, angle = 3.33 degrees 
    48479  
    48480 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    48481 coordinates: 
    48482 Matrix rotation and translation 
    48483 0.99870695 -0.04614412 -0.02133420 10.32762731 
    48484 0.04672537 0.99852640 0.02760031 -26.24679973 
    48485 0.02002917 -0.02856147 0.99939135 -1.58990356 
    48486 Axis -0.48354610 -0.35613357 0.79959493 
    48487 Axis point 545.82748063 240.81579688 0.00000000 
    48488 Rotation angle (degrees) 3.32920138 
    48489 Shift along axis 3.08220380 
    48490  
    48491 Average map value = 0.03088 for 5249 atoms, 746 outside contour 
    48492 
    48493 > fitmap #41 inMap #35 resolution 10 metric correlation
    48494 
    48495 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    48496 correlation = 0.7956, correlation about mean = 0.4574, overlap = 26.74 
    48497 steps = 72, shift = 5.32, angle = 3.33 degrees 
    48498  
    48499 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    48500 coordinates: 
    48501 Matrix rotation and translation 
    48502 0.99870695 -0.04614412 -0.02133420 10.32762731 
    48503 0.04672537 0.99852640 0.02760031 -26.24679973 
    48504 0.02002917 -0.02856147 0.99939135 -1.58990356 
    48505 Axis -0.48354610 -0.35613357 0.79959493 
    48506 Axis point 545.82748063 240.81579688 0.00000000 
    48507 Rotation angle (degrees) 3.32920138 
    48508 Shift along axis 3.08220380 
    48509  
    48510 Average map value = 0.03088 for 5249 atoms, 746 outside contour 
    48511 
    48512 > fitmap #41 inMap #35 resolution 10 metric correlation
    48513 
    48514 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    48515 correlation = 0.7956, correlation about mean = 0.4574, overlap = 26.74 
    48516 steps = 72, shift = 5.32, angle = 3.33 degrees 
    48517  
    48518 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    48519 coordinates: 
    48520 Matrix rotation and translation 
    48521 0.99870695 -0.04614412 -0.02133420 10.32762731 
    48522 0.04672537 0.99852640 0.02760031 -26.24679973 
    48523 0.02002917 -0.02856147 0.99939135 -1.58990356 
    48524 Axis -0.48354610 -0.35613357 0.79959493 
    48525 Axis point 545.82748063 240.81579688 0.00000000 
    48526 Rotation angle (degrees) 3.32920138 
    48527 Shift along axis 3.08220380 
    48528  
    48529 Average map value = 0.03088 for 5249 atoms, 746 outside contour 
    48530 
    48531 > hide #!35 models
    48532 
    48533 > show #!35 models
    48534 
    48535 > show #!36 models
    48536 
    48537 > hide #!36 models
    48538 
    48539 > show #!33 models
    48540 
    48541 > hide #!35 models
    48542 
    48543 > hide #41 models
    48544 
    48545 > show #!38 models
    48546 
    48547 > show #!37 models
    48548 
    48549 > close #38
    48550 
    48551 > combine #37
    48552 
    48553 > hide #!37 models
    48554 
    48555 > show #!37 models
    48556 
    48557 > fitmap #38 inMap #33 resolution 10 metric correlation
    48558 
    48559 Fit map combination map 10 in map Polished-PflCD_single.mrc using 2607 points 
    48560 correlation = 0.8562, correlation about mean = 0.4646, overlap = 17.28 
    48561 steps = 80, shift = 4.98, angle = 8.4 degrees 
    48562  
    48563 Position of combination map 10 (#39) relative to Polished-PflCD_single.mrc
    48564 (#33) coordinates: 
    48565 Matrix rotation and translation 
    48566 0.99274857 -0.11124388 0.04555301 8.94210763 
    48567 0.11465872 0.99010784 -0.08086926 -6.41782952 
    48568 -0.03610619 0.08550589 0.99568323 -5.68708707 
    48569 Axis 0.56938774 0.27946328 0.77310923 
    48570 Axis point 60.37593490 82.07118066 0.00000000 
    48571 Rotation angle (degrees) 8.40098598 
    48572 Shift along axis -1.09876073 
    48573  
    48574 Average map value = 0.02984 for 3466 atoms, 138 outside contour 
    48575 
    48576 > split #38
    48577 
    48578 Split combination (#38) into 2 models 
    48579 Chain information for combination X #38.1 
    48580 --- 
    48581 Chain | Description 
    48582 X | No description available 
    48583  
    48584 Chain information for combination c #38.2 
    48585 --- 
    48586 Chain | Description 
    48587 c | No description available 
    48588  
    48589 
    48590 > color #38.1 #adffc1ff
    48591 
    48592 > color #38.2 #7b80ffff
    48593 
    48594 > save /Users/shoichitachiyama/Desktop/PflC-PflD.png supersample 2
    48595 > transparentBackground true
    48596 
    48597 [Repeated 1 time(s)]
    48598 
    48599 > hide #!33 models
    48600 
    48601 > hide #!37 models
    48602 
    48603 > show #!35 models
    48604 
    48605 > show #!37 models
    48606 
    48607 > hide #!37 models
    48608 
    48609 > show #!37 models
    48610 
    48611 > hide #!38 models
    48612 
    48613 > hide #!37 models
    48614 
    48615 > show #41 models
    48616 
    48617 > show #!40 models
    48618 
    48619 > hide #41 models
    48620 
    48621 > hide #!40 models
    48622 
    48623 > show #!40 models
    48624 
    48625 > hide #!40 models
    48626 
    48627 > show #!40 models
    48628 
    48629 > hide #!40 models
    48630 
    48631 > show #41 models
    48632 
    48633 > show #!40 models
    48634 
    48635 > hide #41 models
    48636 
    48637 > show #41 models
    48638 
    48639 > hide #!40 models
    48640 
    48641 > show #!40 models
    48642 
    48643 > fitmap #41 inMap #35 resolution 10 metric correlation
    48644 
    48645 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    48646 correlation = 0.7956, correlation about mean = 0.4574, overlap = 26.74 
    48647 steps = 72, shift = 5.32, angle = 3.33 degrees 
    48648  
    48649 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    48650 coordinates: 
    48651 Matrix rotation and translation 
    48652 0.99870695 -0.04614412 -0.02133420 10.32762731 
    48653 0.04672537 0.99852640 0.02760031 -26.24679973 
    48654 0.02002917 -0.02856147 0.99939135 -1.58990356 
    48655 Axis -0.48354610 -0.35613357 0.79959493 
    48656 Axis point 545.82748063 240.81579688 0.00000000 
    48657 Rotation angle (degrees) 3.32920138 
    48658 Shift along axis 3.08220380 
    48659  
    48660 Average map value = 0.03088 for 5249 atoms, 746 outside contour 
    48661 
    48662 > fitmap #41 inMap #35 resolution 10 metric correlation
    48663 
    48664 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    48665 correlation = 0.7956, correlation about mean = 0.4574, overlap = 26.74 
    48666 steps = 72, shift = 5.32, angle = 3.33 degrees 
    48667  
    48668 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    48669 coordinates: 
    48670 Matrix rotation and translation 
    48671 0.99870695 -0.04614412 -0.02133420 10.32762731 
    48672 0.04672537 0.99852640 0.02760031 -26.24679973 
    48673 0.02002917 -0.02856147 0.99939135 -1.58990356 
    48674 Axis -0.48354610 -0.35613357 0.79959493 
    48675 Axis point 545.82748063 240.81579688 0.00000000 
    48676 Rotation angle (degrees) 3.32920138 
    48677 Shift along axis 3.08220380 
    48678  
    48679 Average map value = 0.03088 for 5249 atoms, 746 outside contour 
    48680 
    48681 > save /Users/shoichitachiyama/Desktop/For_Cage_PflCD.cxs includeMaps true
    48682 
    48683 ——— End of log from Sat Jul 12 20:19:26 2025 ———
    48684 
    48685 opened ChimeraX session 
    48686 Showing Polished_Cage2 gaussian.seg - 14 regions, 14 surfaces 
    48687 
    48688 > hide #!25 models
    48689 
    48690 > show #!1 models
    48691 
    48692 > hide #!1 models
    48693 
    48694 > close session
    48695 
    48696 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    48697 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    48698 > refinment/For-Chimera-PflAB/Rev-CJFlgYPlfAB-2.1A.mrc"
    48699 
    48700 Opened Rev-CJFlgYPlfAB-2.1A.mrc as #1, grid size 200,200,200, pixel 2.14,
    48701 shown at level 0.0478, step 1, values float32 
    48702 
    48703 > volume #1 level 0.007113
    48704 
    48705 > ui tool show "Segment Map"
    48706 
    48707 Segmenting Rev-CJFlgYPlfAB-2.1A.mrc, density threshold 0.007113 
    48708 Showing 628 region surfaces 
    48709 38016 watershed regions, grouped to 628 regions 
    48710 Showing Rev-CJFlgYPlfAB-2.1A.seg - 628 regions, 628 surfaces 
    48711 
    48712 > select #2.121
    48713 
    48714 1 model selected 
    48715 
    48716 > select add #2.11
    48717 
    48718 2 models selected 
    48719 
    48720 > select add #2.105
    48721 
    48722 3 models selected 
    48723 
    48724 > select add #2.425
    48725 
    48726 4 models selected 
    48727 
    48728 > select add #2.396
    48729 
    48730 5 models selected 
    48731 
    48732 > select add #2.228
    48733 
    48734 6 models selected 
    48735 
    48736 > select add #2.22
    48737 
    48738 7 models selected 
    48739 
    48740 > select add #2.111
    48741 
    48742 8 models selected 
    48743 
    48744 > select add #2.39
    48745 
    48746 9 models selected 
    48747 
    48748 > select add #2.137
    48749 
    48750 10 models selected 
    48751 
    48752 > select add #2.290
    48753 
    48754 11 models selected 
    48755 
    48756 > select add #2.83
    48757 
    48758 12 models selected 
    48759 
    48760 > select add #2.60
    48761 
    48762 13 models selected 
    48763 
    48764 > select add #2.1
    48765 
    48766 14 models selected 
    48767 
    48768 > select add #2.210
    48769 
    48770 15 models selected 
    48771 
    48772 > select add #2.158
    48773 
    48774 16 models selected 
    48775 
    48776 > select add #2.17
    48777 
    48778 17 models selected 
    48779 
    48780 > select add #2.85
    48781 
    48782 18 models selected 
    48783 
    48784 > select add #2.120
    48785 
    48786 19 models selected 
    48787 
    48788 > select add #2.353
    48789 
    48790 20 models selected 
    48791 
    48792 > select add #2.243
    48793 
    48794 21 models selected 
    48795 
    48796 > select add #2.343
    48797 
    48798 22 models selected 
    48799 
    48800 > select add #2.173
    48801 
    48802 23 models selected 
    48803 
    48804 > select subtract #2.173
    48805 
    48806 22 models selected 
    48807 
    48808 > select add #2.147
    48809 
    48810 23 models selected 
    48811 
    48812 > select add #2.303
    48813 
    48814 24 models selected 
    48815 
    48816 > select add #2.173
    48817 
    48818 25 models selected 
    48819 
    48820 > select add #2.87
    48821 
    48822 26 models selected 
    48823 
    48824 > select add #2.172
    48825 
    48826 27 models selected 
    48827 
    48828 > select add #2.463
    48829 
    48830 28 models selected 
    48831 
    48832 > select add #2.25
    48833 
    48834 29 models selected 
    48835 
    48836 > select add #2.86
    48837 
    48838 30 models selected 
    48839 
    48840 > select add #2.4
    48841 
    48842 31 models selected 
    48843 
    48844 > select add #2.19
    48845 
    48846 32 models selected 
    48847 
    48848 > select add #2.170
    48849 
    48850 33 models selected 
    48851 
    48852 > select add #2.441
    48853 
    48854 34 models selected 
    48855 
    48856 > select add #2.23
    48857 
    48858 35 models selected 
    48859 
    48860 > select add #2.95
    48861 
    48862 36 models selected 
    48863 
    48864 > select add #2.144
    48865 
    48866 37 models selected 
    48867 
    48868 > select add #2.315
    48869 
    48870 38 models selected 
    48871 
    48872 > select add #2.313
    48873 
    48874 39 models selected 
    48875 
    48876 > hide #!1 models
    48877 
    48878 > select add #2.129
    48879 
    48880 40 models selected 
    48881 
    48882 > select add #2.54
    48883 
    48884 41 models selected 
    48885 
    48886 > select add #2.40
    48887 
    48888 42 models selected 
    48889 
    48890 > select add #2.55
    48891 
    48892 43 models selected 
    48893 
    48894 > select add #2.88
    48895 
    48896 44 models selected 
    48897 
    48898 > select add #2.27
    48899 
    48900 45 models selected 
    48901 
    48902 > select add #2.116
    48903 
    48904 46 models selected 
    48905 
    48906 > select add #2.457
    48907 
    48908 47 models selected 
    48909 
    48910 > select add #2.10
    48911 
    48912 48 models selected 
    48913 
    48914 > select add #2.208
    48915 
    48916 49 models selected 
    48917 
    48918 > select add #2.104
    48919 
    48920 50 models selected 
    48921 
    48922 > select add #2.250
    48923 
    48924 51 models selected 
    48925 
    48926 > select add #2.234
    48927 
    48928 52 models selected 
    48929 
    48930 > select add #2.84
    48931 
    48932 53 models selected 
    48933 
    48934 > select add #2.282
    48935 
    48936 54 models selected 
    48937 
    48938 > select add #2.5
    48939 
    48940 55 models selected 
    48941 
    48942 > select add #2.14
    48943 
    48944 56 models selected 
    48945 
    48946 > select add #2.275
    48947 
    48948 57 models selected 
    48949 
    48950 > select add #2.185
    48951 
    48952 58 models selected 
    48953 
    48954 > select add #2.75
    48955 
    48956 59 models selected 
    48957 
    48958 > select add #2.108
    48959 
    48960 60 models selected 
    48961 
    48962 > select add #2.52
    48963 
    48964 61 models selected 
    48965 
    48966 > select add #2.126
    48967 
    48968 62 models selected 
    48969 
    48970 > select add #2.68
    48971 
    48972 63 models selected 
    48973 
    48974 > select add #2.59
    48975 
    48976 64 models selected 
    48977 
    48978 > select add #2.112
    48979 
    48980 65 models selected 
    48981 
    48982 > select add #2.221
    48983 
    48984 66 models selected 
    48985 
    48986 > select add #2.26
    48987 
    48988 67 models selected 
    48989 
    48990 > select add #2.139
    48991 
    48992 68 models selected 
    48993 
    48994 > select add #2.179
    48995 
    48996 69 models selected 
    48997 
    48998 > select add #2.207
    48999 
    49000 70 models selected 
    49001 
    49002 > select add #2.347
    49003 
    49004 71 models selected 
    49005 
    49006 > select add #2.56
    49007 
    49008 72 models selected 
    49009 
    49010 > select add #2.29
    49011 
    49012 73 models selected 
    49013 
    49014 > select add #2.361
    49015 
    49016 74 models selected 
    49017 
    49018 > select add #2.163
    49019 
    49020 75 models selected 
    49021 
    49022 > select add #2.321
    49023 
    49024 76 models selected 
    49025 
    49026 > select add #2.15
    49027 
    49028 77 models selected 
    49029 
    49030 > select add #2.141
    49031 
    49032 78 models selected 
    49033 
    49034 > select add #2.154
    49035 
    49036 79 models selected 
    49037 
    49038 > select add #2.198
    49039 
    49040 80 models selected 
    49041 
    49042 > select add #2.248
    49043 
    49044 81 models selected 
    49045 
    49046 > select add #2.251
    49047 
    49048 82 models selected 
    49049 
    49050 > select add #2.7
    49051 
    49052 83 models selected 
    49053 
    49054 > select add #2.306
    49055 
    49056 84 models selected 
    49057 
    49058 > select add #2.316
    49059 
    49060 85 models selected 
    49061 
    49062 > select subtract #2.316
    49063 
    49064 84 models selected 
    49065 
    49066 > select add #2.301
    49067 
    49068 85 models selected 
    49069 
    49070 > select add #2.316
    49071 
    49072 86 models selected 
    49073 
    49074 > select add #2.12
    49075 
    49076 87 models selected 
    49077 
    49078 > select add #2.162
    49079 
    49080 88 models selected 
    49081 
    49082 > select add #2.49
    49083 
    49084 89 models selected 
    49085 
    49086 > select add #2.182
    49087 
    49088 90 models selected 
    49089 
    49090 > select add #2.258
    49091 
    49092 91 models selected 
    49093 
    49094 > select add #2.267
    49095 
    49096 92 models selected 
    49097 
    49098 > select add #2.36
    49099 
    49100 93 models selected 
    49101 
    49102 > select subtract #2.36
    49103 
    49104 92 models selected 
    49105 
    49106 > select add #2.136
    49107 
    49108 93 models selected 
    49109 
    49110 > select add #2.94
    49111 
    49112 94 models selected 
    49113 
    49114 > select add #2.216
    49115 
    49116 95 models selected 
    49117 
    49118 > select add #2.36
    49119 
    49120 96 models selected 
    49121 
    49122 > select add #2.82
    49123 
    49124 97 models selected 
    49125 
    49126 > select add #2.194
    49127 
    49128 98 models selected 
    49129 
    49130 > select add #2.69
    49131 
    49132 99 models selected 
    49133 
    49134 > select add #2.195
    49135 
    49136 100 models selected 
    49137 
    49138 > select add #2.53
    49139 
    49140 101 models selected 
    49141 
    49142 > select add #2.100
    49143 
    49144 102 models selected 
    49145 
    49146 > select add #2.98
    49147 
    49148 103 models selected 
    49149 
    49150 > select add #2.80
    49151 
    49152 104 models selected 
    49153 
    49154 > select add #2.35
    49155 
    49156 105 models selected 
    49157 
    49158 > select add #2.410
    49159 
    49160 106 models selected 
    49161 
    49162 > select add #2.218
    49163 
    49164 107 models selected 
    49165 
    49166 > select add #2.357
    49167 
    49168 108 models selected 
    49169 
    49170 > select add #2.271
    49171 
    49172 109 models selected 
    49173 
    49174 > select add #2.435
    49175 
    49176 110 models selected 
    49177 
    49178 > select add #2.349
    49179 
    49180 111 models selected 
    49181 
    49182 > select add #2.493
    49183 
    49184 112 models selected 
    49185 
    49186 > select add #2.276
    49187 
    49188 113 models selected 
    49189 
    49190 > select add #2.272
    49191 
    49192 114 models selected 
    49193 
    49194 > select add #2.264
    49195 
    49196 115 models selected 
    49197 
    49198 > select add #2.18
    49199 
    49200 116 models selected 
    49201 
    49202 > select add #2.38
    49203 
    49204 117 models selected 
    49205 
    49206 > select add #2.399
    49207 
    49208 118 models selected 
    49209 
    49210 > select add #2.67
    49211 
    49212 119 models selected 
    49213 
    49214 > select add #2.134
    49215 
    49216 120 models selected 
    49217 
    49218 > select add #2.72
    49219 
    49220 121 models selected 
    49221 
    49222 > select add #2.43
    49223 
    49224 122 models selected 
    49225 
    49226 > select add #2.449
    49227 
    49228 123 models selected 
    49229 
    49230 > select add #2.184
    49231 
    49232 124 models selected 
    49233 
    49234 > select add #2.127
    49235 
    49236 125 models selected 
    49237 
    49238 > select add #2.192
    49239 
    49240 126 models selected 
    49241 
    49242 > select add #2.77
    49243 
    49244 127 models selected 
    49245 
    49246 > select add #2.151
    49247 
    49248 128 models selected 
    49249 
    49250 > select add #2.155
    49251 
    49252 129 models selected 
    49253 
    49254 > select add #2.78
    49255 
    49256 130 models selected 
    49257 
    49258 > select add #2.58
    49259 
    49260 131 models selected 
    49261 
    49262 > select add #2.246
    49263 
    49264 132 models selected 
    49265 
    49266 > select add #2.193
    49267 
    49268 133 models selected 
    49269 
    49270 > select add #2.235
    49271 
    49272 134 models selected 
    49273 
    49274 > select add #2.160
    49275 
    49276 135 models selected 
    49277 
    49278 > select add #2.142
    49279 
    49280 136 models selected 
    49281 
    49282 > select add #2.48
    49283 
    49284 137 models selected 
    49285 
    49286 > select add #2.226
    49287 
    49288 138 models selected 
    49289 
    49290 > select add #2.102
    49291 
    49292 139 models selected 
    49293 
    49294 > select add #2.62
    49295 
    49296 140 models selected 
    49297 
    49298 > select add #2.150
    49299 
    49300 141 models selected 
    49301 
    49302 > select add #2.103
    49303 
    49304 142 models selected 
    49305 
    49306 > select add #2.90
    49307 
    49308 143 models selected 
    49309 Drag select of 47328, 47 of 17728 triangles, 50570, 10 of 23168 triangles,
    49310 47408, 36 of 14584 triangles, 50525, 30 of 24132 triangles, 50457, 34 of 20492
    49311 triangles, 50382, 33 of 21380 triangles 
    49312 
    49313 > select add #2.93
    49314 
    49315 148 models selected 
    49316 
    49317 > select add #2.8
    49318 
    49319 149 models selected 
    49320 
    49321 > select add #2.96
    49322 
    49323 150 models selected 
    49324 
    49325 > select add #2.101
    49326 
    49327 151 models selected 
    49328 
    49329 > select add #2.51
    49330 
    49331 152 models selected 
    49332 
    49333 > select add #2.21
    49334 
    49335 153 models selected 
    49336 
    49337 > select add #2.24
    49338 
    49339 154 models selected 
    49340 
    49341 > select add #2.287
    49342 
    49343 155 models selected 
    49344 
    49345 > select add #2.61
    49346 
    49347 156 models selected 
    49348 
    49349 > select add #2.124
    49350 
    49351 157 models selected 
    49352 
    49353 > select add #2.119
    49354 
    49355 158 models selected 
    49356 
    49357 > select add #2.32
    49358 
    49359 159 models selected 
    49360 
    49361 > select add #2.125
    49362 
    49363 160 models selected 
    49364 
    49365 > select add #2.204
    49366 
    49367 161 models selected 
    49368 
    49369 > select subtract #2.204
    49370 
    49371 160 models selected 
    49372 
    49373 > select add #2.255
    49374 
    49375 161 models selected 
    49376 
    49377 > select add #2.204
    49378 
    49379 162 models selected 
    49380 
    49381 > select add #2.117
    49382 
    49383 163 models selected 
    49384 
    49385 > select subtract #2.117
    49386 
    49387 162 models selected 
    49388 
    49389 > select add #2.117
    49390 
    49391 163 models selected 
    49392 
    49393 > select add #2.175
    49394 
    49395 164 models selected 
    49396 
    49397 > select add #2.113
    49398 
    49399 165 models selected 
    49400 
    49401 > select add #2.262
    49402 
    49403 166 models selected 
    49404 
    49405 > select add #2.344
    49406 
    49407 167 models selected 
    49408 
    49409 > select add #2.376
    49410 
    49411 168 models selected 
    49412 
    49413 > select add #2.90
    49414 
    49415 169 models selected 
    49416 
    49417 > select add #2.169
    49418 
    49419 170 models selected 
    49420 
    49421 > select add #2.205
    49422 
    49423 171 models selected 
    49424 
    49425 > select add #2.308
    49426 
    49427 172 models selected 
    49428 
    49429 > select add #2.252
    49430 
    49431 173 models selected 
    49432 
    49433 > select add #2.281
    49434 
    49435 174 models selected 
    49436 
    49437 > select add #2.167
    49438 
    49439 175 models selected 
    49440 Drag select of 50372, 10 of 17540 triangles, 50387, 24 of 15784 triangles,
    49441 50187, 5 of 11000 triangles, 49741, 12 of 10360 triangles, 50750, 54 of 22704
    49442 triangles, 47396, 16 of 7912 triangles 
    49443 
    49444 > select subtract #2.167
    49445 
    49446 180 models selected 
    49447 
    49448 > select add #2.115
    49449 
    49450 181 models selected 
    49451 
    49452 > select add #2.164
    49453 
    49454 182 models selected 
    49455 
    49456 > select add #2.206
    49457 
    49458 183 models selected 
    49459 
    49460 > select add #2.232
    49461 
    49462 184 models selected 
    49463 
    49464 > select add #2.143
    49465 
    49466 185 models selected 
    49467 
    49468 > select add #2.214
    49469 
    49470 186 models selected 
    49471 
    49472 > select add #2.178
    49473 
    49474 187 models selected 
    49475 
    49476 > select add #2.259
    49477 
    49478 188 models selected 
    49479 
    49480 > select add #2.66
    49481 
    49482 189 models selected 
    49483 
    49484 > select add #2.202
    49485 
    49486 190 models selected 
    49487 
    49488 > select add #2.146
    49489 
    49490 191 models selected 
    49491 
    49492 > select add #2.199
    49493 
    49494 192 models selected 
    49495 
    49496 > select add #2.135
    49497 
    49498 193 models selected 
    49499 
    49500 > select add #2.63
    49501 
    49502 194 models selected 
    49503 
    49504 > select add #2.254
    49505 
    49506 195 models selected 
    49507 
    49508 > select add #2.16
    49509 
    49510 196 models selected 
    49511 
    49512 > select add #2.317
    49513 
    49514 197 models selected 
    49515 
    49516 > select add #2.168
    49517 
    49518 198 models selected 
    49519 
    49520 > select add #2.196
    49521 
    49522 199 models selected 
    49523 
    49524 > select add #2.132
    49525 
    49526 200 models selected 
    49527 
    49528 > select add #2.334
    49529 
    49530 201 models selected 
    49531 
    49532 > select add #2.392
    49533 
    49534 202 models selected 
    49535 
    49536 > select add #2.294
    49537 
    49538 203 models selected 
    49539 
    49540 > select add #2.318
    49541 
    49542 204 models selected 
    49543 
    49544 > select add #2.167
    49545 
    49546 205 models selected 
    49547 
    49548 > select add #2.291
    49549 
    49550 206 models selected 
    49551 
    49552 > select add #2.2
    49553 
    49554 207 models selected 
    49555 
    49556 > select add #2.176
    49557 
    49558 208 models selected 
    49559 
    49560 > select add #2.437
    49561 
    49562 209 models selected 
    49563 
    49564 > select add #2.46
    49565 
    49566 210 models selected 
    49567 
    49568 > select add #2.378
    49569 
    49570 211 models selected 
    49571 
    49572 > select add #2.398
    49573 
    49574 212 models selected 
    49575 
    49576 > select add #2.212
    49577 
    49578 213 models selected 
    49579 
    49580 > select add #2.231
    49581 
    49582 214 models selected 
    49583 
    49584 > select add #2.34
    49585 
    49586 215 models selected 
    49587 
    49588 > select add #2.419
    49589 
    49590 216 models selected 
    49591 
    49592 > select add #2.213
    49593 
    49594 217 models selected 
    49595 
    49596 > select add #2.340
    49597 
    49598 218 models selected 
    49599 
    49600 > select add #2.31
    49601 
    49602 219 models selected 
    49603 
    49604 > select add #2.13
    49605 
    49606 220 models selected 
    49607 
    49608 > select add #2.292
    49609 
    49610 221 models selected 
    49611 
    49612 > select add #2.330
    49613 
    49614 222 models selected 
    49615 
    49616 > select add #2.240
    49617 
    49618 223 models selected 
    49619 
    49620 > select add #2.106
    49621 
    49622 224 models selected 
    49623 
    49624 > select add #2.237
    49625 
    49626 225 models selected 
    49627 
    49628 > select add #2.30
    49629 
    49630 226 models selected 
    49631 
    49632 > select add #2.89
    49633 
    49634 227 models selected 
    49635 
    49636 > select add #2.33
    49637 
    49638 228 models selected 
    49639 
    49640 > select add #2.107
    49641 
    49642 229 models selected 
    49643 
    49644 > select add #2.42
    49645 
    49646 230 models selected 
    49647 
    49648 > select add #2.114
    49649 
    49650 231 models selected 
    49651 
    49652 > select add #2.439
    49653 
    49654 232 models selected 
    49655 
    49656 > select subtract #2.439
    49657 
    49658 231 models selected 
    49659 
    49660 > select add #2.300
    49661 
    49662 232 models selected 
    49663 
    49664 > select add #2.401
    49665 
    49666 233 models selected 
    49667 
    49668 > select add #2.265
    49669 
    49670 234 models selected 
    49671 
    49672 > select add #2.322
    49673 
    49674 235 models selected 
    49675 
    49676 > select add #2.293
    49677 
    49678 236 models selected 
    49679 
    49680 > select add #2.338
    49681 
    49682 237 models selected 
    49683 
    49684 > select add #2.358
    49685 
    49686 238 models selected 
    49687 
    49688 > select add #2.257
    49689 
    49690 239 models selected 
    49691 
    49692 > select add #2.331
    49693 
    49694 240 models selected 
    49695 
    49696 > select add #2.389
    49697 
    49698 241 models selected 
    49699 
    49700 > select add #2.201
    49701 
    49702 242 models selected 
    49703 
    49704 > select add #2.286
    49705 
    49706 243 models selected 
    49707 
    49708 > select add #2.450
    49709 
    49710 244 models selected 
    49711 
    49712 > select add #2.426
    49713 
    49714 245 models selected 
    49715 
    49716 > select add #2.203
    49717 
    49718 246 models selected 
    49719 
    49720 > select add #2.390
    49721 
    49722 247 models selected 
    49723 
    49724 > select add #2.138
    49725 
    49726 248 models selected 
    49727 
    49728 > select add #2.97
    49729 
    49730 249 models selected 
    49731 
    49732 > select add #2.152
    49733 
    49734 250 models selected 
    49735 
    49736 > select add #2.3
    49737 
    49738 251 models selected 
    49739 
    49740 > select add #2.45
    49741 
    49742 252 models selected 
    49743 
    49744 > select add #2.305
    49745 
    49746 253 models selected 
    49747 Drag select of 49779, 128 of 23888 triangles, 50669, 118 of 45648 triangles,
    49748 50340, 22 of 13236 triangles, 50619, 47 of 23528 triangles, 50176, 35 of 3020
    49749 triangles 
    49750 
    49751 > select subtract #2.244
    49752 
    49753 257 models selected 
    49754 
    49755 > select add #2.385
    49756 
    49757 258 models selected 
    49758 
    49759 > select add #2.244
    49760 
    49761 259 models selected 
    49762 
    49763 > select add #2.323
    49764 
    49765 260 models selected 
    49766 
    49767 > select add #2.372
    49768 
    49769 261 models selected 
    49770 
    49771 > select add #2.229
    49772 
    49773 262 models selected 
    49774 
    49775 > select add #2.110
    49776 
    49777 263 models selected 
    49778 
    49779 > select add #2.571
    49780 
    49781 264 models selected 
    49782 
    49783 > select add #2.79
    49784 
    49785 265 models selected 
    49786 
    49787 > select add #2.65
    49788 
    49789 266 models selected 
    49790 
    49791 > select add #2.363
    49792 
    49793 267 models selected 
    49794 
    49795 > select add #2.159
    49796 
    49797 268 models selected 
    49798 
    49799 > select add #2.238
    49800 
    49801 269 models selected 
    49802 
    49803 > select add #2.365
    49804 
    49805 270 models selected 
    49806 
    49807 > select add #2.118
    49808 
    49809 271 models selected 
    49810 Drag select of 50643, 144 of 97072 triangles, 50569, 33 of 22748 triangles 
    49811 
    49812 > select add #2.241
    49813 
    49814 274 models selected 
    49815 
    49816 > select add #2.391
    49817 
    49818 275 models selected 
    49819 
    49820 > select subtract #2.391
    49821 
    49822 274 models selected 
    49823 Drag select of 50680, 67 of 32524 triangles, 49971, 76 of 15912 triangles,
    49824 49036, 21 of 4700 triangles 
    49825 
    49826 > select subtract #2.47
    49827 
    49828 276 models selected 
    49829 
    49830 > select add #2.81
    49831 
    49832 277 models selected 
    49833 
    49834 > select add #2.47
    49835 
    49836 278 models selected 
    49837 
    49838 > select add #2.165
    49839 
    49840 279 models selected 
    49841 
    49842 > select add #2.197
    49843 
    49844 280 models selected 
    49845 
    49846 > select add #2.76
    49847 
    49848 281 models selected 
    49849 
    49850 > select add #2.71
    49851 
    49852 282 models selected 
    49853 
    49854 > select add #2.74
    49855 
    49856 283 models selected 
    49857 
    49858 > select add #2.145
    49859 
    49860 284 models selected 
    49861 
    49862 > select add #2.233
    49863 
    49864 285 models selected 
    49865 
    49866 > select add #2.370
    49867 
    49868 286 models selected 
    49869 
    49870 > select add #2.386
    49871 
    49872 287 models selected 
    49873 
    49874 > select add #2.487
    49875 
    49876 288 models selected 
    49877 Grouped 288 regions 
    49878 
    49879 The cached device pixel ratio value was stale on window expose. Please file a
    49880 QTBUG which explains how to reproduce. 
    49881 
    49882 > select clear
    49883 
    49884 > select #2.1
    49885 
    49886 1 model selected 
    49887 
    49888 > select add #2.266
    49889 
    49890 2 models selected 
    49891 
    49892 > select add #2.411
    49893 
    49894 3 models selected 
    49895 
    49896 > select add #2.400
    49897 
    49898 4 models selected 
    49899 
    49900 > select add #2.222
    49901 
    49902 5 models selected 
    49903 
    49904 > select add #2.603
    49905 
    49906 6 models selected 
    49907 
    49908 > select add #2.384
    49909 
    49910 7 models selected 
    49911 
    49912 > select add #2.345
    49913 
    49914 8 models selected 
    49915 
    49916 > select add #2.403
    49917 
    49918 9 models selected 
    49919 
    49920 > select add #2.373
    49921 
    49922 10 models selected 
    49923 
    49924 > select add #2.310
    49925 
    49926 11 models selected 
    49927 
    49928 > select add #2.288
    49929 
    49930 12 models selected 
    49931 
    49932 > select add #2.274
    49933 
    49934 13 models selected 
    49935 
    49936 > select add #2.354
    49937 
    49938 14 models selected 
    49939 
    49940 > select add #2.408
    49941 
    49942 15 models selected 
    49943 Grouped 15 regions 
    49944 
    49945 > select clear
    49946 
    49947 > select #2.1
    49948 
    49949 1 model selected 
    49950 
    49951 > select #2.1
    49952 
    49953 1 model selected 
    49954 
    49955 > select add #2.355
    49956 
    49957 2 models selected 
    49958 
    49959 > select #2.1
    49960 
    49961 1 model selected 
    49962 
    49963 > select clear
    49964 
    49965 > select #2.1
    49966 
    49967 1 model selected 
    49968 
    49969 > select add #2.355
    49970 
    49971 2 models selected 
    49972 
    49973 > select add #2.609
    49974 
    49975 3 models selected 
    49976 
    49977 > select add #2.387
    49978 
    49979 4 models selected 
    49980 Grouped 4 regions 
    49981 
    49982 > select clear
    49983 
    49984 > select #2.1
    49985 
    49986 1 model selected 
    49987 Opened Rev-CJFlgYPlfAB-2.1A_imasked as #3, grid size 200,200,200, pixel 2.14,
    49988 shown at step 1, values float32 
    49989 
    49990 > hide #!2 models
    49991 
    49992 > show #!2 models
    49993 
    49994 The cached device pixel ratio value was stale on window expose. Please file a
    49995 QTBUG which explains how to reproduce. 
    49996 
    49997 Segmenting Rev-CJFlgYPlfAB-2.1A_imasked, density threshold 0.007113 
    49998 Showing 307 region surfaces 
    49999 20735 watershed regions, grouped to 307 regions 
    50000 Showing Rev-CJFlgYPlfAB-2.seg - 307 regions, 307 surfaces 
    50001 
    50002 > select #2.35
    50003 
    50004 1 model selected 
    50005 
    50006 > select add #2.120
    50007 
    50008 2 models selected 
    50009 
    50010 > select add #2.97
    50011 
    50012 3 models selected 
    50013 
    50014 > select add #2.72
    50015 
    50016 4 models selected 
    50017 
    50018 > select add #2.226
    50019 
    50020 5 models selected 
    50021 
    50022 > select add #2.92
    50023 
    50024 6 models selected 
    50025 
    50026 > hide #!3 models
    50027 
    50028 > select add #2.290
    50029 
    50030 7 models selected 
    50031 
    50032 > select add #2.280
    50033 
    50034 8 models selected 
    50035 
    50036 > select add #2.107
    50037 
    50038 9 models selected 
    50039 
    50040 > select add #2.10
    50041 
    50042 10 models selected 
    50043 
    50044 > select add #2.8
    50045 
    50046 11 models selected 
    50047 
    50048 > select add #2.20
    50049 
    50050 12 models selected 
    50051 
    50052 > select add #2.187
    50053 
    50054 13 models selected 
    50055 
    50056 > select add #2.210
    50057 
    50058 14 models selected 
    50059 
    50060 > select add #2.254
    50061 
    50062 15 models selected 
    50063 
    50064 > select add #2.270
    50065 
    50066 16 models selected 
    50067 
    50068 > select add #2.19
    50069 
    50070 17 models selected 
    50071 
    50072 > select add #2.99
    50073 
    50074 18 models selected 
    50075 
    50076 > select add #2.152
    50077 
    50078 19 models selected 
    50079 
    50080 > select add #2.103
    50081 
    50082 20 models selected 
    50083 
    50084 > select add #2.206
    50085 
    50086 21 models selected 
    50087 
    50088 > select add #2.170
    50089 
    50090 22 models selected 
    50091 
    50092 > select add #2.55
    50093 
    50094 23 models selected 
    50095 
    50096 > select add #2.205
    50097 
    50098 24 models selected 
    50099 
    50100 > select add #2.118
    50101 
    50102 25 models selected 
    50103 
    50104 > select add #2.128
    50105 
    50106 26 models selected 
    50107 
    50108 > select add #2.166
    50109 
    50110 27 models selected 
    50111 
    50112 > select add #2.57
    50113 
    50114 28 models selected 
    50115 
    50116 > select add #2.168
    50117 
    50118 29 models selected 
    50119 
    50120 > select add #2.209
    50121 
    50122 30 models selected 
    50123 
    50124 > select add #2.178
    50125 
    50126 31 models selected 
    50127 
    50128 > select add #2.125
    50129 
    50130 32 models selected 
    50131 
    50132 > select add #2.230
    50133 
    50134 33 models selected 
    50135 
    50136 > select add #2.173
    50137 
    50138 34 models selected 
    50139 
    50140 > select add #2.101
    50141 
    50142 35 models selected 
    50143 
    50144 > select add #2.242
    50145 
    50146 36 models selected 
    50147 
    50148 > select add #2.227
    50149 
    50150 37 models selected 
    50151 
    50152 > select add #2.145
    50153 
    50154 38 models selected 
    50155 
    50156 > select add #2.180
    50157 
    50158 39 models selected 
    50159 
    50160 > select add #2.184
    50161 
    50162 40 models selected 
    50163 
    50164 > select add #2.204
    50165 
    50166 41 models selected 
    50167 
    50168 > select add #2.172
    50169 
    50170 42 models selected 
    50171 
    50172 > select add #2.236
    50173 
    50174 43 models selected 
    50175 
    50176 > select add #2.221
    50177 
    50178 44 models selected 
    50179 
    50180 > select add #2.185
    50181 
    50182 45 models selected 
    50183 
    50184 > select add #2.259
    50185 
    50186 46 models selected 
    50187 
    50188 > select add #2.143
    50189 
    50190 47 models selected 
    50191 
    50192 > select add #2.190
    50193 
    50194 48 models selected 
    50195 
    50196 > select add #2.154
    50197 
    50198 49 models selected 
    50199 Grouped 49 regions 
    50200 
    50201 > select add #2.15
    50202 
    50203 2 models selected 
    50204 
    50205 > select add #2.80
    50206 
    50207 3 models selected 
    50208 
    50209 > select add #2.146
    50210 
    50211 4 models selected 
    50212 
    50213 > select add #2.163
    50214 
    50215 5 models selected 
    50216 
    50217 > select add #2.83
    50218 
    50219 6 models selected 
    50220 
    50221 > select add #2.115
    50222 
    50223 7 models selected 
    50224 
    50225 > select add #2.114
    50226 
    50227 8 models selected 
    50228 
    50229 > select add #2.79
    50230 
    50231 9 models selected 
    50232 
    50233 > select add #2.108
    50234 
    50235 10 models selected 
    50236 
    50237 > select add #2.147
    50238 
    50239 11 models selected 
    50240 
    50241 > select add #2.88
    50242 
    50243 12 models selected 
    50244 
    50245 > select add #2.44
    50246 
    50247 13 models selected 
    50248 
    50249 > select subtract #2.44
    50250 
    50251 12 models selected 
    50252 
    50253 > select add #2.44
    50254 
    50255 13 models selected 
    50256 
    50257 > select add #2.271
    50258 
    50259 14 models selected 
    50260 
    50261 > select add #2.249
    50262 
    50263 15 models selected 
    50264 
    50265 > select add #2.279
    50266 
    50267 16 models selected 
    50268 
    50269 > select add #2.281
    50270 
    50271 17 models selected 
    50272 
    50273 > select add #2.294
    50274 
    50275 18 models selected 
    50276 
    50277 > select add #2.16
    50278 
    50279 19 models selected 
    50280 
    50281 > select add #2.222
    50282 
    50283 20 models selected 
    50284 
    50285 > select add #2.1
    50286 
    50287 21 models selected 
    50288 
    50289 > select add #2.176
    50290 
    50291 22 models selected 
    50292 
    50293 > select add #2.138
    50294 
    50295 23 models selected 
    50296 Grouped 23 regions 
    50297 
    50298 > select add #2.110
    50299 
    50300 2 models selected 
    50301 
    50302 > select add #2.52
    50303 
    50304 3 models selected 
    50305 Grouped 3 regions 
    50306 
    50307 > select add #2.109
    50308 
    50309 2 models selected 
    50310 
    50311 > select add #2.67
    50312 
    50313 3 models selected 
    50314 
    50315 > select add #2.66
    50316 
    50317 4 models selected 
    50318 
    50319 > select add #2.87
    50320 
    50321 5 models selected 
    50322 
    50323 > select add #2.95
    50324 
    50325 6 models selected 
    50326 
    50327 > select add #2.91
    50328 
    50329 7 models selected 
    50330 
    50331 > select add #2.192
    50332 
    50333 8 models selected 
    50334 
    50335 > select add #2.40
    50336 
    50337 9 models selected 
    50338 
    50339 > select add #2.153
    50340 
    50341 10 models selected 
    50342 
    50343 > select add #2.54
    50344 
    50345 11 models selected 
    50346 
    50347 > select add #2.46
    50348 
    50349 12 models selected 
    50350 
    50351 > select add #2.45
    50352 
    50353 13 models selected 
    50354 
    50355 > select add #2.9
    50356 
    50357 14 models selected 
    50358 
    50359 > select add #2.111
    50360 
    50361 15 models selected 
    50362 
    50363 > select subtract #2.111
    50364 
    50365 14 models selected 
    50366 
    50367 > select add #2.81
    50368 
    50369 15 models selected 
    50370 
    50371 > select add #2.111
    50372 
    50373 16 models selected 
    50374 
    50375 > select add #2.161
    50376 
    50377 17 models selected 
    50378 
    50379 > select add #2.157
    50380 
    50381 18 models selected 
    50382 
    50383 > select add #2.94
    50384 
    50385 19 models selected 
    50386 
    50387 > select add #2.78
    50388 
    50389 20 models selected 
    50390 
    50391 > select subtract #2.78
    50392 
    50393 19 models selected 
    50394 
    50395 > select subtract #2.94
    50396 
    50397 18 models selected 
    50398 Grouped 18 regions 
    50399 
    50400 > select clear
    50401 
    50402 > select #2.1
    50403 
    50404 1 model selected 
    50405 
    50406 > select add #2.29
    50407 
    50408 2 models selected 
    50409 
    50410 > select add #2.241
    50411 
    50412 3 models selected 
    50413 
    50414 > select add #2.18
    50415 
    50416 4 models selected 
    50417 
    50418 > select add #2.202
    50419 
    50420 5 models selected 
    50421 
    50422 > select add #2.4
    50423 
    50424 6 models selected 
    50425 Grouped 6 regions 
    50426 
    50427 > select clear
    50428 
    50429 > select #2.1
    50430 
    50431 1 model selected 
    50432 Opened Rev-CJFlgYPlfAB-2_imasked as #4, grid size 200,200,200, pixel 2.14,
    50433 shown at step 1, values float32 
    50434 Segmenting Rev-CJFlgYPlfAB-2_imasked, density threshold 0.007113 
    50435 Showing 215 region surfaces 
    50436 14302 watershed regions, grouped to 215 regions 
    50437 Showing Rev-CJFlgYPlfAB-2_imasked.seg - 215 regions, 215 surfaces 
    50438 
    50439 > select #2.1
    50440 
    50441 1 model selected 
    50442 
    50443 > select add #2.63
    50444 
    50445 2 models selected 
    50446 
    50447 > select #2.1
    50448 
    50449 1 model selected 
    50450 
    50451 > select #2.111
    50452 
    50453 1 model selected 
    50454 
    50455 > select #2.25
    50456 
    50457 1 model selected 
    50458 
    50459 > select add #2.60
    50460 
    50461 2 models selected 
    50462 
    50463 > select add #2.19
    50464 
    50465 3 models selected 
    50466 
    50467 > select add #2.53
    50468 
    50469 4 models selected 
    50470 
    50471 > select add #2.17
    50472 
    50473 5 models selected 
    50474 
    50475 > select add #2.63
    50476 
    50477 6 models selected 
    50478 Grouped 6 regions 
    50479 
    50480 > select clear
    50481 
    50482 > select #2.1
    50483 
    50484 1 model selected 
    50485 Ungrouped to 4 regions 
    50486 
    50487 > select #2.25
    50488 
    50489 1 model selected 
    50490 Ungrouped to 5 regions 
    50491 
    50492 > select #2.217
    50493 
    50494 1 model selected 
    50495 
    50496 > select add #2.53
    50497 
    50498 2 models selected 
    50499 
    50500 > select add #2.17
    50501 
    50502 3 models selected 
    50503 
    50504 > select add #2.218
    50505 
    50506 4 models selected 
    50507 Grouped 4 regions 
    50508 
    50509 > select #2.54
    50510 
    50511 1 model selected 
    50512 
    50513 > select add #2.17
    50514 
    50515 2 models selected 
    50516 
    50517 > select clear
    50518 
    50519 > select #2.111
    50520 
    50521 1 model selected 
    50522 
    50523 > select add #2.17
    50524 
    50525 2 models selected 
    50526 Grouped 2 regions 
    50527 
    50528 > select clear
    50529 
    50530 > select #2.17
    50531 
    50532 1 model selected 
    50533 
    50534 > select clear
    50535 
    50536 > select #2.17
    50537 
    50538 1 model selected 
    50539 
    50540 > hide #!4 models
    50541 
    50542 Opened Rev-CJFlgYPlfAB-2_imasked_imasked as #5, grid size 200,200,200, pixel
    50543 2.14, shown at step 1, values float32 
    50544 
    50545 The cached device pixel ratio value was stale on window expose. Please file a
    50546 QTBUG which explains how to reproduce. 
    50547 
    50548 > save /Users/shoichi/Desktop/CJSef_no-mask/PflC2.mrc models #5
    50549 
    50550 Opened Rev-CJFlgYPlfAB-2_imasked_imasked as #6, grid size 200,200,200, pixel
    50551 2.14, shown at step 1, values float32 
    50552 Segmenting Rev-CJFlgYPlfAB-2_imasked_imasked, density threshold 0.007113 
    50553 Showing 210 region surfaces 
    50554 13006 watershed regions, grouped to 210 regions 
    50555 Showing Rev-CJFlgYPlfAB-2_imasked_imasked.seg - 210 regions, 210 surfaces 
    50556 
    50557 > hide #!5 models
    50558 
    50559 > hide #!6 models
    50560 
    50561 > show #!5 models
    50562 
    50563 > select #2.38
    50564 
    50565 1 model selected 
    50566 
    50567 > select add #2.98
    50568 
    50569 2 models selected 
    50570 
    50571 > select add #2.63
    50572 
    50573 3 models selected 
    50574 
    50575 > select add #2.96
    50576 
    50577 4 models selected 
    50578 
    50579 > select add #2.90
    50580 
    50581 5 models selected 
    50582 
    50583 > select add #2.54
    50584 
    50585 6 models selected 
    50586 
    50587 > select add #2.27
    50588 
    50589 7 models selected 
    50590 
    50591 > hide #!5 models
    50592 
    50593 Grouped 7 regions 
    50594 
    50595 > select add #2.89
    50596 
    50597 2 models selected 
    50598 Grouped 2 regions 
    50599 
    50600 > select clear
    50601 
    50602 > select #2.27
    50603 
    50604 1 model selected 
    50605 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked as #7, grid size 200,200,200,
    50606 pixel 2.14, shown at step 1, values float32 
    50607 
    50608 The cached device pixel ratio value was stale on window expose. Please file a
    50609 QTBUG which explains how to reproduce. 
    50610 
    50611 > save /Users/shoichi/Desktop/CJSef_no-mask/PflC1.mrc models #7
    50612 
    50613 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked as #8, grid size 200,200,200,
    50614 pixel 2.14, shown at step 1, values float32 
    50615 Segmenting Rev-CJFlgYPlfAB-2_imasked_imasked_imasked, density threshold
    50616 0.007113 
    50617 Showing 202 region surfaces 
    50618 12777 watershed regions, grouped to 202 regions 
    50619 Showing Rev-CJFlgYPlfAB-2_imasked_imasked_imasked.seg - 202 regions, 202
    50620 surfaces 
    50621 
    50622 > hide #!7 models
    50623 
    50624 > hide #!8 models
    50625 
    50626 > select #2.74
    50627 
    50628 1 model selected 
    50629 
    50630 > select add #2.65
    50631 
    50632 2 models selected 
    50633 
    50634 > select add #2.61
    50635 
    50636 3 models selected 
    50637 
    50638 > select clear
    50639 
    50640 > select #2.61
    50641 
    50642 1 model selected 
    50643 
    50644 > select add #2.65
    50645 
    50646 2 models selected 
    50647 
    50648 > select add #2.74
    50649 
    50650 3 models selected 
    50651 Grouped 3 regions 
    50652 
    50653 > select clear
    50654 
    50655 > select #2.61
    50656 
    50657 1 model selected 
    50658 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked as #9, grid size
    50659 200,200,200, pixel 2.14, shown at step 1, values float32 
    50660 
    50661 The cached device pixel ratio value was stale on window expose. Please file a
    50662 QTBUG which explains how to reproduce. 
    50663 
    50664 > save /Users/shoichi/Desktop/CJSef_no-mask/PflD.mrc models #9
    50665 
    50666 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked as #10, grid size
    50667 200,200,200, pixel 2.14, shown at step 1, values float32 
    50668 Segmenting Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked, density
    50669 threshold 0.007113 
    50670 Showing 199 region surfaces 
    50671 12705 watershed regions, grouped to 199 regions 
    50672 Showing Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked.seg - 199 regions,
    50673 199 surfaces 
    50674 
    50675 > hide #!9 models
    50676 
    50677 > select #2.32
    50678 
    50679 1 model selected 
    50680 
    50681 > select add #2.37
    50682 
    50683 2 models selected 
    50684 
    50685 > select add #2.31
    50686 
    50687 3 models selected 
    50688 
    50689 > select add #2.28
    50690 
    50691 4 models selected 
    50692 
    50693 > hide #!10 models
    50694 
    50695 > select clear
    50696 
    50697 > select #2.28
    50698 
    50699 1 model selected 
    50700 
    50701 > select add #2.31
    50702 
    50703 2 models selected 
    50704 
    50705 > select add #2.37
    50706 
    50707 3 models selected 
    50708 
    50709 > select add #2.32
    50710 
    50711 4 models selected 
    50712 Ungrouped to 16 regions 
    50713 
    50714 > select #2.203
    50715 
    50716 1 model selected 
    50717 Ungrouped to 6 regions 
    50718 
    50719 > select #2.217
    50720 
    50721 1 model selected 
    50722 
    50723 > select add #2.32
    50724 
    50725 2 models selected 
    50726 
    50727 > select add #2.28
    50728 
    50729 3 models selected 
    50730 Grouped 3 regions 
    50731 
    50732 > select add #2.216
    50733 
    50734 2 models selected 
    50735 
    50736 > select add #2.37
    50737 
    50738 3 models selected 
    50739 Grouped 3 regions 
    50740 
    50741 > select #2.213
    50742 
    50743 1 model selected 
    50744 
    50745 > select add #2.212
    50746 
    50747 2 models selected 
    50748 
    50749 > select add #2.215
    50750 
    50751 3 models selected 
    50752 Grouped 3 regions 
    50753 
    50754 > select add #2.205
    50755 
    50756 2 models selected 
    50757 Grouped 2 regions 
    50758 
    50759 > select add #2.28
    50760 
    50761 2 models selected 
    50762 Grouped 2 regions 
    50763 
    50764 > select #2.201
    50765 
    50766 1 model selected 
    50767 
    50768 > select clear
    50769 
    50770 > select #2.201
    50771 
    50772 1 model selected 
    50773 Ungrouped to 7 regions 
    50774 Ungrouped to 20 regions 
    50775 
    50776 > select #2.226
    50777 
    50778 1 model selected 
    50779 
    50780 > select add #2.224
    50781 
    50782 2 models selected 
    50783 
    50784 > select add #2.221
    50785 
    50786 3 models selected 
    50787 
    50788 > select add #2.37
    50789 
    50790 4 models selected 
    50791 Grouped 4 regions 
    50792 
    50793 > select add #2.218
    50794 
    50795 2 models selected 
    50796 
    50797 > select add #2.231
    50798 
    50799 3 models selected 
    50800 
    50801 > select add #2.230
    50802 
    50803 4 models selected 
    50804 
    50805 > select add #2.228
    50806 
    50807 5 models selected 
    50808 
    50809 > select add #2.225
    50810 
    50811 6 models selected 
    50812 
    50813 > select add #2.223
    50814 
    50815 7 models selected 
    50816 
    50817 > select add #2.220
    50818 
    50819 8 models selected 
    50820 Grouped 8 regions 
    50821 
    50822 > select add #2.219
    50823 
    50824 2 models selected 
    50825 
    50826 > select add #2.232
    50827 
    50828 3 models selected 
    50829 
    50830 > select add #2.229
    50831 
    50832 4 models selected 
    50833 
    50834 > select add #2.222
    50835 
    50836 5 models selected 
    50837 
    50838 > select add #2.233
    50839 
    50840 6 models selected 
    50841 Grouped 6 regions 
    50842 
    50843 > select clear
    50844 
    50845 > select #2.28
    50846 
    50847 1 model selected 
    50848 
    50849 > select add #2.37
    50850 
    50851 2 models selected 
    50852 Grouped 2 regions 
    50853 Showing 216 region surfaces 
    50854 
    50855 > select clear
    50856 
    50857 > select #2.28
    50858 
    50859 1 model selected 
    50860 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked as #11, grid
    50861 size 200,200,200, pixel 2.14, shown at step 1, values float32 
    50862 
    50863 The cached device pixel ratio value was stale on window expose. Please file a
    50864 QTBUG which explains how to reproduce. 
    50865 
    50866 > save /Users/shoichi/Desktop/CJSef_no-mask/MotBpg.mrc models #11
    50867 
    50868 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked as #12, grid
    50869 size 200,200,200, pixel 2.14, shown at step 1, values float32 
    50870 Segmenting Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked, density
    50871 threshold 0.007113 
    50872 Showing 200 region surfaces 
    50873 12639 watershed regions, grouped to 200 regions 
    50874 Showing Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked.seg - 200
    50875 regions, 200 surfaces 
    50876 
    50877 > hide #!11 models
    50878 
    50879 > select #2.39
    50880 
    50881 1 model selected 
    50882 
    50883 > select add #2.53
    50884 
    50885 2 models selected 
    50886 
    50887 > select add #2.57
    50888 
    50889 3 models selected 
    50890 Drag select of 16691, 40 of 44176 triangles, 16475, 11 of 17632 triangles,
    50891 16441, 10 of 16132 triangles, 12 Rev-
    50892 CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked 
    50893 
    50894 > select add #2.66
    50895 
    50896 9 models selected 
    50897 
    50898 > select #2.48
    50899 
    50900 1 model selected 
    50901 
    50902 > select add #2.66
    50903 
    50904 2 models selected 
    50905 
    50906 > select add #2.105
    50907 
    50908 3 models selected 
    50909 
    50910 > select add #2.89
    50911 
    50912 4 models selected 
    50913 
    50914 > select add #2.39
    50915 
    50916 5 models selected 
    50917 
    50918 > select add #2.53
    50919 
    50920 6 models selected 
    50921 
    50922 > select add #2.57
    50923 
    50924 7 models selected 
    50925 
    50926 > select add #2.51
    50927 
    50928 8 models selected 
    50929 
    50930 > select add #2.69
    50931 
    50932 9 models selected 
    50933 
    50934 > select add #2.29
    50935 
    50936 10 models selected 
    50937 
    50938 > select add #2.32
    50939 
    50940 11 models selected 
    50941 
    50942 > select add #2.156
    50943 
    50944 12 models selected 
    50945 
    50946 > select subtract #2.156
    50947 
    50948 11 models selected 
    50949 
    50950 > select add #2.56
    50951 
    50952 12 models selected 
    50953 
    50954 > select add #2.80
    50955 
    50956 13 models selected 
    50957 
    50958 > select add #2.156
    50959 
    50960 14 models selected 
    50961 
    50962 > select add #2.45
    50963 
    50964 15 models selected 
    50965 
    50966 > select add #2.52
    50967 
    50968 16 models selected 
    50969 
    50970 > select add #2.41
    50971 
    50972 17 models selected 
    50973 
    50974 > hide #!12 models
    50975 
    50976 Grouped 17 regions 
    50977 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked as
    50978 #13, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    50979 
    50980 The cached device pixel ratio value was stale on window expose. Please file a
    50981 QTBUG which explains how to reproduce. 
    50982 
    50983 > save /Users/shoichi/Desktop/CJSef_no-mask/PflA-FlgY.mrc models #13
    50984 
    50985 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked as
    50986 #14, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    50987 Segmenting Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked,
    50988 density threshold 0.007113 
    50989 Showing 182 region surfaces 
    50990 11992 watershed regions, grouped to 182 regions 
    50991 Showing Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked.seg
    50992 - 182 regions, 182 surfaces 
    50993 
    50994 > hide #!14 models
    50995 
    50996 > hide #!13 models
    50997 
    50998 > select #2.142
    50999 
    51000 1 model selected 
    51001 
    51002 > select add #2.73
    51003 
    51004 2 models selected 
    51005 
    51006 > select add #2.113
    51007 
    51008 3 models selected 
    51009 
    51010 > select add #2.79
    51011 
    51012 4 models selected 
    51013 
    51014 > select add #2.22
    51015 
    51016 5 models selected 
    51017 
    51018 > select add #2.13
    51019 
    51020 6 models selected 
    51021 
    51022 > select clear
    51023 
    51024 > select #2.14
    51025 
    51026 1 model selected 
    51027 
    51028 > select add #2.65
    51029 
    51030 2 models selected 
    51031 Grouped 2 regions 
    51032 
    51033 > select clear
    51034 
    51035 > select #2.10
    51036 
    51037 1 model selected 
    51038 
    51039 > select add #2.37
    51040 
    51041 2 models selected 
    51042 
    51043 > select #2.10
    51044 
    51045 1 model selected 
    51046 Ungrouped to 2 regions 
    51047 
    51048 > select #2.65
    51049 
    51050 1 model selected 
    51051 Ungrouped to 18 regions 
    51052 
    51053 > select #2.37
    51054 
    51055 1 model selected 
    51056 
    51057 > select add #2.183
    51058 
    51059 2 models selected 
    51060 
    51061 > select add #2.191
    51062 
    51063 3 models selected 
    51064 
    51065 > select add #2.193
    51066 
    51067 4 models selected 
    51068 
    51069 > select add #2.184
    51070 
    51071 5 models selected 
    51072 
    51073 > select subtract #2.184
    51074 
    51075 4 models selected 
    51076 Grouped 4 regions 
    51077 
    51078 > select #2.184
    51079 
    51080 1 model selected 
    51081 Ungrouped to 10 regions 
    51082 
    51083 > select #2.14
    51084 
    51085 1 model selected 
    51086 
    51087 > select add #2.199
    51088 
    51089 2 models selected 
    51090 
    51091 > select add #2.201
    51092 
    51093 3 models selected 
    51094 
    51095 > select add #2.188
    51096 
    51097 4 models selected 
    51098 
    51099 > select add #2.186
    51100 
    51101 5 models selected 
    51102 
    51103 > select add #2.185
    51104 
    51105 6 models selected 
    51106 
    51107 > select add #2.200
    51108 
    51109 7 models selected 
    51110 
    51111 > select add #2.195
    51112 
    51113 8 models selected 
    51114 
    51115 > select add #2.194
    51116 
    51117 9 models selected 
    51118 Grouped 9 regions 
    51119 
    51120 > select add #2.197
    51121 
    51122 2 models selected 
    51123 Grouped 2 regions 
    51124 
    51125 > select clear
    51126 
    51127 > select #2.166
    51128 
    51129 1 model selected 
    51130 
    51131 > select add #2.189
    51132 
    51133 2 models selected 
    51134 
    51135 > select add #2.187
    51136 
    51137 3 models selected 
    51138 
    51139 > select add #2.205
    51140 
    51141 4 models selected 
    51142 
    51143 > select add #2.202
    51144 
    51145 5 models selected 
    51146 
    51147 > select add #2.206
    51148 
    51149 6 models selected 
    51150 
    51151 > select add #2.183
    51152 
    51153 7 models selected 
    51154 
    51155 > select add #2.203
    51156 
    51157 8 models selected 
    51158 
    51159 > select add #2.196
    51160 
    51161 9 models selected 
    51162 
    51163 > select #2.14
    51164 
    51165 1 model selected 
    51166 Ungrouped to 2 regions 
    51167 Ungrouped to 11 regions 
    51168 
    51169 > select subtract #2.200
    51170 
    51171 10 models selected 
    51172 
    51173 > select clear
    51174 
    51175 > select #2.200
    51176 
    51177 1 model selected 
    51178 
    51179 > select #2.197
    51180 
    51181 1 model selected 
    51182 
    51183 > select #2.197
    51184 
    51185 1 model selected 
    51186 Ungrouped to 6 regions 
    51187 Ungrouped to 0 regions 
    51188 
    51189 > select #2.14
    51190 
    51191 1 model selected 
    51192 
    51193 > select add #2.186
    51194 
    51195 2 models selected 
    51196 
    51197 > select add #2.191
    51198 
    51199 3 models selected 
    51200 
    51201 > select subtract #2.191
    51202 
    51203 2 models selected 
    51204 
    51205 > select add #2.193
    51206 
    51207 3 models selected 
    51208 
    51209 > select add #2.191
    51210 
    51211 4 models selected 
    51212 
    51213 > select add #2.65
    51214 
    51215 5 models selected 
    51216 
    51217 > select add #2.185
    51218 
    51219 6 models selected 
    51220 
    51221 > select add #2.198
    51222 
    51223 7 models selected 
    51224 
    51225 > select add #2.212
    51226 
    51227 8 models selected 
    51228 
    51229 > select add #2.184
    51230 
    51231 9 models selected 
    51232 
    51233 > select add #2.201
    51234 
    51235 10 models selected 
    51236 
    51237 > select add #2.211
    51238 
    51239 11 models selected 
    51240 
    51241 > select add #2.194
    51242 
    51243 12 models selected 
    51244 
    51245 > select add #2.195
    51246 
    51247 13 models selected 
    51248 
    51249 > select add #2.209
    51250 
    51251 14 models selected 
    51252 
    51253 > select add #2.15
    51254 
    51255 15 models selected 
    51256 Showing 211 region surfaces 
    51257 
    51258 > select clear
    51259 
    51260 > save /Users/shoichi/Desktop/CJSef_no-mask/Segment-nomask.cxs
    51261 
    51262 > save /Users/shoichi/Desktop/CJSef_no-mask/Segment-nomask.cxs includeMaps
    51263 > true
    51264 
    51265 ——— End of log from Tue Jul 22 14:40:48 2025 ———
    51266 
    51267 opened ChimeraX session 
    51268 Showing Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked.seg
    51269 - 211 regions, 211 surfaces 
    51270 
    51271 > select #2.142
    51272 
    51273 1 model selected 
    51274 
    51275 > select add #2.127
    51276 
    51277 2 models selected 
    51278 
    51279 > select add #2.44
    51280 
    51281 3 models selected 
    51282 
    51283 > select add #2.113
    51284 
    51285 4 models selected 
    51286 
    51287 > select add #2.52
    51288 
    51289 5 models selected 
    51290 
    51291 > select add #2.148
    51292 
    51293 6 models selected 
    51294 
    51295 > select add #2.37
    51296 
    51297 7 models selected 
    51298 
    51299 > select add #2.137
    51300 
    51301 8 models selected 
    51302 
    51303 > select add #2.70
    51304 
    51305 9 models selected 
    51306 
    51307 > select add #2.60
    51308 
    51309 10 models selected 
    51310 
    51311 > select add #2.188
    51312 
    51313 11 models selected 
    51314 
    51315 > select add #2.63
    51316 
    51317 12 models selected 
    51318 
    51319 > select add #2.66
    51320 
    51321 13 models selected 
    51322 
    51323 > select add #2.115
    51324 
    51325 14 models selected 
    51326 
    51327 > select add #2.39
    51328 
    51329 15 models selected 
    51330 
    51331 > select add #2.125
    51332 
    51333 16 models selected 
    51334 
    51335 > select add #2.105
    51336 
    51337 17 models selected 
    51338 
    51339 > select subtract #2.105
    51340 
    51341 16 models selected 
    51342 
    51343 > select add #2.105
    51344 
    51345 17 models selected 
    51346 
    51347 > select add #2.92
    51348 
    51349 18 models selected 
    51350 Grouped 18 regions 
    51351 
    51352 > select add #2.149
    51353 
    51354 2 models selected 
    51355 
    51356 > select add #2.46
    51357 
    51358 3 models selected 
    51359 
    51360 > select add #2.76
    51361 
    51362 4 models selected 
    51363 
    51364 > select add #2.123
    51365 
    51366 5 models selected 
    51367 
    51368 > select add #2.167
    51369 
    51370 6 models selected 
    51371 
    51372 > select add #2.210
    51373 
    51374 7 models selected 
    51375 
    51376 > select add #2.126
    51377 
    51378 8 models selected 
    51379 Grouped 8 regions 
    51380 
    51381 > select add #2.42
    51382 
    51383 2 models selected 
    51384 
    51385 > select add #2.120
    51386 
    51387 3 models selected 
    51388 
    51389 > select add #2.83
    51390 
    51391 4 models selected 
    51392 
    51393 > select add #2.80
    51394 
    51395 5 models selected 
    51396 Grouped 5 regions 
    51397 
    51398 > select add #2.51
    51399 
    51400 2 models selected 
    51401 
    51402 > select add #2.211
    51403 
    51404 3 models selected 
    51405 Grouped 3 regions 
    51406 
    51407 > select add #2.151
    51408 
    51409 2 models selected 
    51410 
    51411 > select add #2.33
    51412 
    51413 3 models selected 
    51414 
    51415 > select add #2.31
    51416 
    51417 4 models selected 
    51418 
    51419 > select subtract #2.31
    51420 
    51421 3 models selected 
    51422 
    51423 > select add #2.31
    51424 
    51425 4 models selected 
    51426 
    51427 > select add #2.25
    51428 
    51429 5 models selected 
    51430 
    51431 > select add #2.23
    51432 
    51433 6 models selected 
    51434 
    51435 > select add #2.27
    51436 
    51437 7 models selected 
    51438 
    51439 > select add #2.26
    51440 
    51441 8 models selected 
    51442 
    51443 > select subtract #2.23
    51444 
    51445 7 models selected 
    51446 
    51447 > select add #2.23
    51448 
    51449 8 models selected 
    51450 
    51451 > select add #2.21
    51452 
    51453 9 models selected 
    51454 
    51455 > select add #2.17
    51456 
    51457 10 models selected 
    51458 
    51459 > select add #2.19
    51460 
    51461 11 models selected 
    51462 
    51463 > select add #2.13
    51464 
    51465 12 models selected 
    51466 
    51467 > select add #2.8
    51468 
    51469 13 models selected 
    51470 
    51471 > select add #2.12
    51472 
    51473 14 models selected 
    51474 
    51475 > select add #2.6
    51476 
    51477 15 models selected 
    51478 
    51479 > select add #2.11
    51480 
    51481 16 models selected 
    51482 
    51483 > select add #2.124
    51484 
    51485 17 models selected 
    51486 
    51487 > select subtract #2.124
    51488 
    51489 16 models selected 
    51490 
    51491 > select subtract #2.11
    51492 
    51493 15 models selected 
    51494 
    51495 > select add #2.11
    51496 
    51497 16 models selected 
    51498 
    51499 > select add #2.7
    51500 
    51501 17 models selected 
    51502 
    51503 > select add #2.5
    51504 
    51505 18 models selected 
    51506 
    51507 > select add #2.32
    51508 
    51509 19 models selected 
    51510 Grouped 19 regions 
    51511 
    51512 > select add #2.22
    51513 
    51514 2 models selected 
    51515 
    51516 > select add #2.20
    51517 
    51518 3 models selected 
    51519 
    51520 > select add #2.15
    51521 
    51522 4 models selected 
    51523 
    51524 > select add #2.9
    51525 
    51526 5 models selected 
    51527 
    51528 > select add #2.14
    51529 
    51530 6 models selected 
    51531 
    51532 > select add #2.34
    51533 
    51534 7 models selected 
    51535 
    51536 > select add #2.4
    51537 
    51538 8 models selected 
    51539 
    51540 > select add #2.1
    51541 
    51542 9 models selected 
    51543 
    51544 > select add #2.2
    51545 
    51546 10 models selected 
    51547 
    51548 > select add #2.165
    51549 
    51550 11 models selected 
    51551 Grouped 11 regions 
    51552 
    51553 > select add #2.10
    51554 
    51555 2 models selected 
    51556 
    51557 > select add #2.35
    51558 
    51559 3 models selected 
    51560 
    51561 > select add #2.100
    51562 
    51563 4 models selected 
    51564 Grouped 4 regions 
    51565 
    51566 > select add #2.134
    51567 
    51568 2 models selected 
    51569 
    51570 > select add #2.53
    51571 
    51572 3 models selected 
    51573 
    51574 > select add #2.40
    51575 
    51576 4 models selected 
    51577 
    51578 > select add #2.119
    51579 
    51580 5 models selected 
    51581 Grouped 5 regions 
    51582 
    51583 > select add #2.195
    51584 
    51585 2 models selected 
    51586 
    51587 > select add #2.175
    51588 
    51589 3 models selected 
    51590 
    51591 > select add #2.85
    51592 
    51593 4 models selected 
    51594 
    51595 > select add #2.192
    51596 
    51597 5 models selected 
    51598 
    51599 > select add #2.170
    51600 
    51601 6 models selected 
    51602 Grouped 6 regions 
    51603 
    51604 > select clear
    51605 
    51606 > select #2.97
    51607 
    51608 1 model selected 
    51609 
    51610 > select clear
    51611 
    51612 > select #2.1
    51613 
    51614 1 model selected 
    51615 
    51616 > select add #2.204
    51617 
    51618 2 models selected 
    51619 Grouped 2 regions 
    51620 
    51621 > select add #2.196
    51622 
    51623 2 models selected 
    51624 
    51625 > select add #2.58
    51626 
    51627 3 models selected 
    51628 
    51629 > select add #2.75
    51630 
    51631 4 models selected 
    51632 
    51633 > select add #2.96
    51634 
    51635 5 models selected 
    51636 
    51637 > select add #2.103
    51638 
    51639 6 models selected 
    51640 
    51641 > select add #2.172
    51642 
    51643 7 models selected 
    51644 Grouped 7 regions 
    51645 
    51646 > select add #2.128
    51647 
    51648 2 models selected 
    51649 Grouped 2 regions 
    51650 
    51651 > select add #2.205
    51652 
    51653 2 models selected 
    51654 
    51655 > select add #2.150
    51656 
    51657 3 models selected 
    51658 Grouped 3 regions 
    51659 
    51660 > select clear
    51661 
    51662 > select #2.1
    51663 
    51664 1 model selected 
    51665 
    51666 The cached device pixel ratio value was stale on window expose. Please file a
    51667 QTBUG which explains how to reproduce. 
    51668 
    51669 Showing 131 region surfaces 
    51670 Opened Rev-
    51671 CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #15,
    51672 grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    51673 
    51674 The cached device pixel ratio value was stale on window expose. Please file a
    51675 QTBUG which explains how to reproduce. 
    51676 
    51677 Segmenting Rev-
    51678 CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked, density
    51679 threshold 0.007113 
    51680 Showing 55 region surfaces 
    51681 2769 watershed regions, grouped to 55 regions 
    51682 Showing Rev-
    51683 CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg - 55
    51684 regions, 55 surfaces 
    51685 
    51686 > select #2.15
    51687 
    51688 1 model selected 
    51689 Ungrouped to 3 regions 
    51690 
    51691 > select #2.56
    51692 
    51693 1 model selected 
    51694 
    51695 > select #2.1
    51696 
    51697 1 model selected 
    51698 Ungrouped to 5 regions 
    51699 
    51700 > select #2.56
    51701 
    51702 1 model selected 
    51703 
    51704 > select add #2.59
    51705 
    51706 2 models selected 
    51707 
    51708 > select add #2.60
    51709 
    51710 3 models selected 
    51711 
    51712 > select add #2.61
    51713 
    51714 4 models selected 
    51715 
    51716 > select add #2.62
    51717 
    51718 5 models selected 
    51719 Grouped 5 regions 
    51720 
    51721 > select clear
    51722 
    51723 > select #2.15
    51724 
    51725 1 model selected 
    51726 Ungrouped to 5 regions 
    51727 
    51728 > select #2.62
    51729 
    51730 1 model selected 
    51731 
    51732 > select add #2.61
    51733 
    51734 2 models selected 
    51735 
    51736 > select add #2.60
    51737 
    51738 3 models selected 
    51739 
    51740 > select add #2.1
    51741 
    51742 4 models selected 
    51743 Grouped 4 regions 
    51744 
    51745 > select add #2.56
    51746 
    51747 2 models selected 
    51748 Grouped 2 regions 
    51749 
    51750 > select clear
    51751 
    51752 > select #2.1
    51753 
    51754 1 model selected 
    51755 
    51756 > hide #!15 models
    51757 
    51758 > select clear
    51759 
    51760 > select #2.59
    51761 
    51762 1 model selected 
    51763 Ungrouped to 15 regions 
    51764 
    51765 > select #2.5
    51766 
    51767 1 model selected 
    51768 
    51769 > select add #2.61
    51770 
    51771 2 models selected 
    51772 
    51773 > select add #2.71
    51774 
    51775 3 models selected 
    51776 
    51777 > select add #2.56
    51778 
    51779 4 models selected 
    51780 Grouped 4 regions 
    51781 
    51782 > select #2.70
    51783 
    51784 1 model selected 
    51785 
    51786 > select add #2.66
    51787 
    51788 2 models selected 
    51789 
    51790 > select add #2.65
    51791 
    51792 3 models selected 
    51793 
    51794 > select add #2.62
    51795 
    51796 4 models selected 
    51797 
    51798 > select add #2.64
    51799 
    51800 5 models selected 
    51801 
    51802 > select add #2.67
    51803 
    51804 6 models selected 
    51805 
    51806 > select add #2.69
    51807 
    51808 7 models selected 
    51809 
    51810 > select add #2.60
    51811 
    51812 8 models selected 
    51813 Grouped 8 regions 
    51814 Showing 61 region surfaces 
    51815 
    51816 > select add #2.1
    51817 
    51818 2 models selected 
    51819 Grouped 2 regions 
    51820 
    51821 > select #2.72
    51822 
    51823 1 model selected 
    51824 
    51825 > select add #2.63
    51826 
    51827 2 models selected 
    51828 
    51829 > select add #2.5
    51830 
    51831 3 models selected 
    51832 Grouped 3 regions 
    51833 
    51834 > select #2.28
    51835 
    51836 1 model selected 
    51837 Ungrouped to 3 regions 
    51838 
    51839 > select clear
    51840 
    51841 > select #2.60
    51842 
    51843 1 model selected 
    51844 Showing 60 region surfaces 
    51845 
    51846 > select add #2.1
    51847 
    51848 2 models selected 
    51849 Grouped 2 regions 
    51850 
    51851 > select clear
    51852 
    51853 > select #2.38
    51854 
    51855 1 model selected 
    51856 Ungrouped to 3 regions 
    51857 
    51858 > select #2.61
    51859 
    51860 1 model selected 
    51861 
    51862 > select add #2.1
    51863 
    51864 2 models selected 
    51865 Grouped 2 regions 
    51866 
    51867 > select clear
    51868 
    51869 > select #2.51
    51870 
    51871 1 model selected 
    51872 Ungrouped to 2 regions 
    51873 
    51874 > select #2.61
    51875 
    51876 1 model selected 
    51877 
    51878 > select add #2.1
    51879 
    51880 2 models selected 
    51881 
    51882 > select subtract #2.1
    51883 
    51884 1 model selected 
    51885 
    51886 The cached device pixel ratio value was stale on window expose. Please file a
    51887 QTBUG which explains how to reproduce. 
    51888 
    51889 > select add #2.1
    51890 
    51891 2 models selected 
    51892 Grouped 2 regions 
    51893 
    51894 > select #2.22
    51895 
    51896 1 model selected 
    51897 Ungrouped to 4 regions 
    51898 
    51899 > select #2.61
    51900 
    51901 1 model selected 
    51902 
    51903 > select add #2.1
    51904 
    51905 2 models selected 
    51906 Grouped 2 regions 
    51907 
    51908 > select clear
    51909 
    51910 > select #2.63
    51911 
    51912 1 model selected 
    51913 Ungrouped to 15 regions 
    51914 Ungrouped to 7 regions 
    51915 
    51916 > select #2.1
    51917 
    51918 1 model selected 
    51919 
    51920 > select add #2.64
    51921 
    51922 2 models selected 
    51923 
    51924 > select add #2.74
    51925 
    51926 3 models selected 
    51927 
    51928 > select add #2.24
    51929 
    51930 4 models selected 
    51931 Grouped 4 regions 
    51932 
    51933 > select clear
    51934 
    51935 > select #2.1
    51936 
    51937 1 model selected 
    51938 
    51939 > select clear
    51940 
    51941 > select #2.21
    51942 
    51943 1 model selected 
    51944 Ungrouped to 5 regions 
    51945 
    51946 > select #2.77
    51947 
    51948 1 model selected 
    51949 Showing 82 region surfaces 
    51950 
    51951 > select add #2.1
    51952 
    51953 2 models selected 
    51954 Grouped 2 regions 
    51955 
    51956 > select add #2.76
    51957 
    51958 2 models selected 
    51959 
    51960 > select add #2.73
    51961 
    51962 3 models selected 
    51963 Grouped 3 regions 
    51964 
    51965 > select clear
    51966 
    51967 > select #2.1
    51968 
    51969 1 model selected 
    51970 Opened Rev-
    51971 CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    51972 as #16, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    51973 Segmenting Rev-
    51974 CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    51975 density threshold 0.007113 
    51976 Showing 52 region surfaces 
    51977 2394 watershed regions, grouped to 52 regions 
    51978 Showing Rev-
    51979 CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    51980 - 52 regions, 52 surfaces 
    51981 
    51982 > hide #!2 models
    51983 
    51984 > surface dust #16 size 21.4
    51985 
    51986 The cached device pixel ratio value was stale on window expose. Please file a
    51987 QTBUG which explains how to reproduce. 
    51988 
    51989 > save /Users/shoichitachiyama/Desktop/tmp/proximal-disk.mrc models #16
    51990 
    51991 Segmenting proximal-disk.mrc, density threshold 0.007113 
    51992 Showing 52 region surfaces 
    51993 2394 watershed regions, grouped to 52 regions 
    51994 Showing proximal-disk.seg - 52 regions, 52 surfaces 
    51995 
    51996 > select #2.25
    51997 
    51998 1 model selected 
    51999 Ungrouped to 3 regions 
    52000 Ungrouped to 19 regions 
    52001 Ungrouped to 7 regions 
    52002 
    52003 > select #2.65
    52004 
    52005 1 model selected 
    52006 
    52007 > select add #2.17
    52008 
    52009 2 models selected 
    52010 
    52011 > select add #2.29
    52012 
    52013 3 models selected 
    52014 
    52015 > show #!14 models
    52016 
    52017 > hide #!14 models
    52018 
    52019 > show #!15 models
    52020 
    52021 > hide #!15 models
    52022 
    52023 > show #!14 models
    52024 
    52025 > hide #!14 models
    52026 
    52027 > show #!15 models
    52028 
    52029 > hide #!15 models
    52030 
    52031 > show #!14 models
    52032 
    52033 > hide #!14 models
    52034 
    52035 > show #!9 models
    52036 
    52037 > hide #!9 models
    52038 
    52039 > show #!9 models
    52040 
    52041 > hide #!9 models
    52042 
    52043 > show #!8 models
    52044 
    52045 > hide #!8 models
    52046 
    52047 > show #!7 models
    52048 
    52049 > hide #!7 models
    52050 
    52051 > show #!6 models
    52052 
    52053 > hide #!6 models
    52054 
    52055 > show #!1 models
    52056 
    52057 > hide #!1 models
    52058 
    52059 > hide #!2 models
    52060 
    52061 > show #!2 models
    52062 
    52063 > hide #!2 models
    52064 
    52065 > show #!3 models
    52066 
    52067 > hide #!3 models
    52068 
    52069 > show #!1 models
    52070 
    52071 Segmenting Rev-CJFlgYPlfAB-2.1A.mrc, density threshold 0.007113 
    52072 Showing 628 region surfaces 
    52073 38016 watershed regions, grouped to 628 regions 
    52074 Showing Rev-CJFlgYPlfAB-2.1A.seg - 628 regions, 628 surfaces 
    52075 Segmenting Rev-CJFlgYPlfAB-2.1A.mrc, density threshold 0.007113 
    52076 Showing 628 region surfaces 
    52077 38016 watershed regions, grouped to 628 regions 
    52078 Showing Rev-CJFlgYPlfAB-2.1A.seg - 628 regions, 628 surfaces 
    52079 
    52080 > select #2.105
    52081 
    52082 1 model selected 
    52083 
    52084 > select add #2.425
    52085 
    52086 2 models selected 
    52087 
    52088 > select add #2.396
    52089 
    52090 3 models selected 
    52091 
    52092 > select add #2.121
    52093 
    52094 4 models selected 
    52095 
    52096 > select add #2.11
    52097 
    52098 5 models selected 
    52099 
    52100 > select add #2.22
    52101 
    52102 6 models selected 
    52103 
    52104 > select add #2.228
    52105 
    52106 7 models selected 
    52107 Grouped 7 regions 
    52108 
    52109 > hide #!1 models
    52110 
    52111 > hide #!16 models
    52112 
    52113 > select add #2.8
    52114 
    52115 2 models selected 
    52116 
    52117 > select add #2.376
    52118 
    52119 3 models selected 
    52120 
    52121 > select add #2.262
    52122 
    52123 4 models selected 
    52124 
    52125 > select add #2.344
    52126 
    52127 5 models selected 
    52128 Grouped 5 regions 
    52129 
    52130 > select add #2.111
    52131 
    52132 2 models selected 
    52133 
    52134 > select add #2.204
    52135 
    52136 3 models selected 
    52137 
    52138 > select add #2.255
    52139 
    52140 4 models selected 
    52141 
    52142 > select add #2.117
    52143 
    52144 5 models selected 
    52145 
    52146 > select add #2.175
    52147 
    52148 6 models selected 
    52149 
    52150 > select add #2.113
    52151 
    52152 7 models selected 
    52153 
    52154 > select add #2.21
    52155 
    52156 8 models selected 
    52157 Grouped 8 regions 
    52158 
    52159 > select add #2.16
    52160 
    52161 2 models selected 
    52162 
    52163 > select subtract #2.16
    52164 
    52165 1 model selected 
    52166 
    52167 > select add #2.16
    52168 
    52169 2 models selected 
    52170 
    52171 > select add #2.93
    52172 
    52173 3 models selected 
    52174 
    52175 > select add #2.96
    52176 
    52177 4 models selected 
    52178 
    52179 > select add #2.130
    52180 
    52181 5 models selected 
    52182 
    52183 > select add #2.90
    52184 
    52185 6 models selected 
    52186 
    52187 > select add #2.101
    52188 
    52189 7 models selected 
    52190 
    52191 > select add #2.51
    52192 
    52193 8 models selected 
    52194 
    52195 > select add #2.205
    52196 
    52197 9 models selected 
    52198 
    52199 > select add #2.169
    52200 
    52201 10 models selected 
    52202 
    52203 > select add #2.281
    52204 
    52205 11 models selected 
    52206 
    52207 > select add #2.308
    52208 
    52209 12 models selected 
    52210 
    52211 > select add #2.225
    52212 
    52213 13 models selected 
    52214 
    52215 > select add #2.123
    52216 
    52217 14 models selected 
    52218 
    52219 > select add #2.356
    52220 
    52221 15 models selected 
    52222 
    52223 > select add #2.164
    52224 
    52225 16 models selected 
    52226 
    52227 > select add #2.132
    52228 
    52229 17 models selected 
    52230 
    52231 > select add #2.232
    52232 
    52233 18 models selected 
    52234 
    52235 > select add #2.178
    52236 
    52237 19 models selected 
    52238 
    52239 > select add #2.196
    52240 
    52241 20 models selected 
    52242 
    52243 > select add #2.259
    52244 
    52245 21 models selected 
    52246 
    52247 > select add #2.202
    52248 
    52249 22 models selected 
    52250 
    52251 > select add #2.168
    52252 
    52253 23 models selected 
    52254 Grouped 23 regions 
    52255 
    52256 > select add #2.146
    52257 
    52258 2 models selected 
    52259 
    52260 > select add #2.64
    52261 
    52262 3 models selected 
    52263 
    52264 > select add #2.317
    52265 
    52266 4 models selected 
    52267 
    52268 > select add #2.234
    52269 
    52270 5 models selected 
    52271 
    52272 > select add #2.104
    52273 
    52274 6 models selected 
    52275 
    52276 > select add #2.108
    52277 
    52278 7 models selected 
    52279 
    52280 > select add #2.100
    52281 
    52282 8 models selected 
    52283 
    52284 > select add #2.77
    52285 
    52286 9 models selected 
    52287 
    52288 > select add #2.78
    52289 
    52290 10 models selected 
    52291 
    52292 > select add #2.124
    52293 
    52294 11 models selected 
    52295 
    52296 > select add #2.46
    52297 
    52298 12 models selected 
    52299 
    52300 > select add #2.62
    52301 
    52302 13 models selected 
    52303 
    52304 > select add #2.35
    52305 
    52306 14 models selected 
    52307 
    52308 > select add #2.53
    52309 
    52310 15 models selected 
    52311 
    52312 > select add #2.392
    52313 
    52314 16 models selected 
    52315 
    52316 > select add #2.334
    52317 
    52318 17 models selected 
    52319 
    52320 > select add #2.115
    52321 
    52322 18 models selected 
    52323 
    52324 > select add #2.206
    52325 
    52326 19 models selected 
    52327 
    52328 > select add #2.143
    52329 
    52330 20 models selected 
    52331 
    52332 > select add #2.214
    52333 
    52334 21 models selected 
    52335 
    52336 > select add #2.66
    52337 
    52338 22 models selected 
    52339 
    52340 > select subtract #2.66
    52341 
    52342 21 models selected 
    52343 
    52344 > select add #2.199
    52345 
    52346 22 models selected 
    52347 
    52348 > select add #2.66
    52349 
    52350 23 models selected 
    52351 
    52352 > select add #2.135
    52353 
    52354 24 models selected 
    52355 
    52356 > select add #2.254
    52357 
    52358 25 models selected 
    52359 
    52360 > select subtract #2.64
    52361 
    52362 24 models selected 
    52363 
    52364 > select subtract #2.254
    52365 
    52366 23 models selected 
    52367 
    52368 > select subtract #2.146
    52369 
    52370 22 models selected 
    52371 Grouped 22 regions 
    52372 
    52373 > select add #2.252
    52374 
    52375 2 models selected 
    52376 
    52377 > select add #2.217
    52378 
    52379 3 models selected 
    52380 
    52381 > select add #2.224
    52382 
    52383 4 models selected 
    52384 
    52385 > select add #2.291
    52386 
    52387 5 models selected 
    52388 
    52389 > select add #2.167
    52390 
    52391 6 models selected 
    52392 
    52393 > select add #2.319
    52394 
    52395 7 models selected 
    52396 
    52397 > select add #2.294
    52398 
    52399 8 models selected 
    52400 
    52401 > select add #2.64
    52402 
    52403 9 models selected 
    52404 
    52405 > select add #2.146
    52406 
    52407 10 models selected 
    52408 
    52409 > select add #2.254
    52410 
    52411 11 models selected 
    52412 
    52413 > select add #2.10
    52414 
    52415 12 models selected 
    52416 
    52417 > select subtract #2.10
    52418 
    52419 11 models selected 
    52420 
    52421 > select add #2.10
    52422 
    52423 12 models selected 
    52424 
    52425 > select add #2.126
    52426 
    52427 13 models selected 
    52428 
    52429 > select add #2.94
    52430 
    52431 14 models selected 
    52432 
    52433 > select add #2.194
    52434 
    52435 15 models selected 
    52436 
    52437 > select add #2.52
    52438 
    52439 16 models selected 
    52440 
    52441 > select add #2.184
    52442 
    52443 17 models selected 
    52444 
    52445 > select add #2.69
    52446 
    52447 18 models selected 
    52448 
    52449 > select add #2.195
    52450 
    52451 19 models selected 
    52452 
    52453 > select add #2.127
    52454 
    52455 20 models selected 
    52456 
    52457 > select add #2.398
    52458 
    52459 21 models selected 
    52460 
    52461 > select add #2.379
    52462 
    52463 22 models selected 
    52464 
    52465 > select add #2.437
    52466 
    52467 23 models selected 
    52468 
    52469 > select subtract #2.252
    52470 
    52471 22 models selected 
    52472 
    52473 > select subtract #2.217
    52474 
    52475 21 models selected 
    52476 
    52477 > select subtract #2.224
    52478 
    52479 20 models selected 
    52480 
    52481 > select subtract #2.167
    52482 
    52483 19 models selected 
    52484 
    52485 > select subtract #2.291
    52486 
    52487 18 models selected 
    52488 
    52489 > select add #2.291
    52490 
    52491 19 models selected 
    52492 Grouped 19 regions 
    52493 
    52494 > select add #2.252
    52495 
    52496 2 models selected 
    52497 
    52498 > select add #2.217
    52499 
    52500 3 models selected 
    52501 
    52502 > select add #2.224
    52503 
    52504 4 models selected 
    52505 
    52506 > select add #2.167
    52507 
    52508 5 models selected 
    52509 
    52510 > select add #2.192
    52511 
    52512 6 models selected 
    52513 
    52514 > select add #2.439
    52515 
    52516 7 models selected 
    52517 Showing 550 region surfaces 
    52518 Grouped 7 regions 
    52519 
    52520 > select add #2.125
    52521 
    52522 2 models selected 
    52523 
    52524 > select add #2.32
    52525 
    52526 3 models selected 
    52527 
    52528 > select add #2.58
    52529 
    52530 4 models selected 
    52531 
    52532 > select add #2.155
    52533 
    52534 5 models selected 
    52535 
    52536 > select add #2.176
    52537 
    52538 6 models selected 
    52539 
    52540 > select add #2.2
    52541 
    52542 7 models selected 
    52543 
    52544 > select add #2.171
    52545 
    52546 8 models selected 
    52547 
    52548 > select add #2.103
    52549 
    52550 9 models selected 
    52551 
    52552 > select add #2.102
    52553 
    52554 10 models selected 
    52555 
    52556 > select add #2.151
    52557 
    52558 11 models selected 
    52559 
    52560 > select add #2.80
    52561 
    52562 12 models selected 
    52563 
    52564 > select add #2.83
    52565 
    52566 13 models selected 
    52567 
    52568 > select add #2.39
    52569 
    52570 14 models selected 
    52571 
    52572 > select add #2.98
    52573 
    52574 15 models selected 
    52575 
    52576 > select add #2.75
    52577 
    52578 16 models selected 
    52579 
    52580 > select add #2.84
    52581 
    52582 17 models selected 
    52583 
    52584 > select add #2.4
    52585 
    52586 18 models selected 
    52587 Grouped 18 regions 
    52588 
    52589 > select add #2.17
    52590 
    52591 2 models selected 
    52592 
    52593 > select add #2.282
    52594 
    52595 3 models selected 
    52596 
    52597 > select add #2.1
    52598 
    52599 4 models selected 
    52600 
    52601 > select add #2.137
    52602 
    52603 5 models selected 
    52604 
    52605 > select add #2.290
    52606 
    52607 6 models selected 
    52608 
    52609 > select add #2.210
    52610 
    52611 7 models selected 
    52612 
    52613 > select add #2.158
    52614 
    52615 8 models selected 
    52616 
    52617 > select add #2.85
    52618 
    52619 9 models selected 
    52620 
    52621 > select add #2.7
    52622 
    52623 10 models selected 
    52624 
    52625 > select add #2.251
    52626 
    52627 11 models selected 
    52628 
    52629 > select add #2.410
    52630 
    52631 12 models selected 
    52632 
    52633 > select add #2.248
    52634 
    52635 13 models selected 
    52636 
    52637 > select add #2.198
    52638 
    52639 14 models selected 
    52640 
    52641 > select add #2.15
    52642 
    52643 15 models selected 
    52644 
    52645 > select add #2.141
    52646 
    52647 16 models selected 
    52648 
    52649 > select add #2.275
    52650 
    52651 17 models selected 
    52652 
    52653 > select add #2.14
    52654 
    52655 18 models selected 
    52656 
    52657 > select add #2.5
    52658 
    52659 19 models selected 
    52660 
    52661 > select add #2.25
    52662 
    52663 20 models selected 
    52664 
    52665 > select add #2.60
    52666 
    52667 21 models selected 
    52668 
    52669 > select add #2.250
    52670 
    52671 22 models selected 
    52672 
    52673 > select add #2.19
    52674 
    52675 23 models selected 
    52676 
    52677 > select add #2.116
    52678 
    52679 24 models selected 
    52680 
    52681 > select add #2.185
    52682 
    52683 25 models selected 
    52684 
    52685 > select add #2.154
    52686 
    52687 26 models selected 
    52688 
    52689 > select add #2.119
    52690 
    52691 27 models selected 
    52692 
    52693 > select add #2.24
    52694 
    52695 28 models selected 
    52696 
    52697 > select add #2.426
    52698 
    52699 29 models selected 
    52700 
    52701 > select add #2.257
    52702 
    52703 30 models selected 
    52704 
    52705 > select add #2.450
    52706 
    52707 31 models selected 
    52708 
    52709 > select add #2.389
    52710 
    52711 32 models selected 
    52712 
    52713 > select add #2.286
    52714 
    52715 33 models selected 
    52716 
    52717 > select add #2.338
    52718 
    52719 34 models selected 
    52720 Grouped 34 regions 
    52721 
    52722 > select add #2.331
    52723 
    52724 2 models selected 
    52725 
    52726 > select add #2.272
    52727 
    52728 3 models selected 
    52729 
    52730 > select add #2.276
    52731 
    52732 4 models selected 
    52733 
    52734 > select add #2.264
    52735 
    52736 5 models selected 
    52737 
    52738 > select add #2.218
    52739 
    52740 6 models selected 
    52741 
    52742 > select add #2.357
    52743 
    52744 7 models selected 
    52745 
    52746 > select add #2.435
    52747 
    52748 8 models selected 
    52749 
    52750 > select add #2.349
    52751 
    52752 9 models selected 
    52753 
    52754 > select add #2.271
    52755 
    52756 10 models selected 
    52757 
    52758 > select add #2.110
    52759 
    52760 11 models selected 
    52761 
    52762 > select add #2.147
    52763 
    52764 12 models selected 
    52765 
    52766 > select add #2.303
    52767 
    52768 13 models selected 
    52769 
    52770 > select subtract #2.147
    52771 
    52772 12 models selected 
    52773 
    52774 > select add #2.173
    52775 
    52776 13 models selected 
    52777 
    52778 > select add #2.243
    52779 
    52780 14 models selected 
    52781 
    52782 > select add #2.343
    52783 
    52784 15 models selected 
    52785 
    52786 > select add #2.147
    52787 
    52788 16 models selected 
    52789 
    52790 > select subtract #2.303
    52791 
    52792 15 models selected 
    52793 
    52794 > select subtract #2.147
    52795 
    52796 14 models selected 
    52797 
    52798 > select add #2.87
    52799 
    52800 15 models selected 
    52801 
    52802 > select add #2.172
    52803 
    52804 16 models selected 
    52805 
    52806 > select add #2.447
    52807 
    52808 17 models selected 
    52809 
    52810 > select add #2.120
    52811 
    52812 18 models selected 
    52813 
    52814 > select add #2.353
    52815 
    52816 19 models selected 
    52817 
    52818 > select add #2.370
    52819 
    52820 20 models selected 
    52821 
    52822 > select add #2.463
    52823 
    52824 21 models selected 
    52825 
    52826 > select add #2.147
    52827 
    52828 22 models selected 
    52829 
    52830 > select add #2.303
    52831 
    52832 23 models selected 
    52833 
    52834 > select add #2.365
    52835 
    52836 24 models selected 
    52837 
    52838 > select add #2.79
    52839 
    52840 25 models selected 
    52841 
    52842 > select add #2.65
    52843 
    52844 26 models selected 
    52845 
    52846 > select add #2.306
    52847 
    52848 27 models selected 
    52849 
    52850 > select add #2.363
    52851 
    52852 28 models selected 
    52853 
    52854 > select add #2.159
    52855 
    52856 29 models selected 
    52857 
    52858 > select add #2.358
    52859 
    52860 30 models selected 
    52861 
    52862 > select add #2.233
    52863 
    52864 31 models selected 
    52865 
    52866 > select add #2.386
    52867 
    52868 32 models selected 
    52869 
    52870 > select add #2.487
    52871 
    52872 33 models selected 
    52873 
    52874 > select subtract #2.487
    52875 
    52876 32 models selected 
    52877 Grouped 32 regions 
    52878 
    52879 > select add #2.238
    52880 
    52881 2 models selected 
    52882 
    52883 > select add #2.391
    52884 
    52885 3 models selected 
    52886 Grouped 3 regions 
    52887 
    52888 > select add #2.118
    52889 
    52890 2 models selected 
    52891 
    52892 > select add #2.157
    52893 
    52894 3 models selected 
    52895 
    52896 > select subtract #2.157
    52897 
    52898 2 models selected 
    52899 
    52900 > select add #2.157
    52901 
    52902 3 models selected 
    52903 
    52904 > select add #2.241
    52905 
    52906 4 models selected 
    52907 
    52908 > select add #2.47
    52909 
    52910 5 models selected 
    52911 
    52912 > select add #2.81
    52913 
    52914 6 models selected 
    52915 
    52916 > select add #2.165
    52917 
    52918 7 models selected 
    52919 
    52920 > select add #2.197
    52921 
    52922 8 models selected 
    52923 
    52924 > select add #2.149
    52925 
    52926 9 models selected 
    52927 
    52928 > select add #2.161
    52929 
    52930 10 models selected 
    52931 
    52932 > select add #2.307
    52933 
    52934 11 models selected 
    52935 
    52936 > select add #2.190
    52937 
    52938 12 models selected 
    52939 
    52940 > select add #2.131
    52941 
    52942 13 models selected 
    52943 
    52944 > select add #2.44
    52945 
    52946 14 models selected 
    52947 
    52948 > select add #2.236
    52949 
    52950 15 models selected 
    52951 
    52952 > select add #2.37
    52953 
    52954 16 models selected 
    52955 
    52956 > select add #2.6
    52957 
    52958 17 models selected 
    52959 
    52960 > select add #2.180
    52961 
    52962 18 models selected 
    52963 Grouped 18 regions 
    52964 
    52965 > select add #2.43
    52966 
    52967 2 models selected 
    52968 
    52969 > select add #2.82
    52970 
    52971 3 models selected 
    52972 
    52973 > select add #2.29
    52974 
    52975 4 models selected 
    52976 
    52977 > select add #2.68
    52978 
    52979 5 models selected 
    52980 
    52981 > select add #2.27
    52982 
    52983 6 models selected 
    52984 
    52985 > select add #2.88
    52986 
    52987 7 models selected 
    52988 
    52989 > select add #2.86
    52990 
    52991 8 models selected 
    52992 
    52993 > select add #2.61
    52994 
    52995 9 models selected 
    52996 
    52997 > select add #2.287
    52998 
    52999 10 models selected 
    53000 
    53001 > select add #2.48
    53002 
    53003 11 models selected 
    53004 
    53005 > select add #2.226
    53006 
    53007 12 models selected 
    53008 
    53009 > select add #2.72
    53010 
    53011 13 models selected 
    53012 
    53013 > select add #2.67
    53014 
    53015 14 models selected 
    53016 
    53017 > select add #2.399
    53018 
    53019 15 models selected 
    53020 
    53021 > select add #2.55
    53022 
    53023 16 models selected 
    53024 
    53025 > select add #2.267
    53026 
    53027 17 models selected 
    53028 
    53029 > select add #2.361
    53030 
    53031 18 models selected 
    53032 
    53033 > select add #2.59
    53034 
    53035 19 models selected 
    53036 
    53037 > select add #2.26
    53038 
    53039 20 models selected 
    53040 
    53041 > select add #2.54
    53042 
    53043 21 models selected 
    53044 
    53045 > select add #2.129
    53046 
    53047 22 models selected 
    53048 
    53049 > select add #2.56
    53050 
    53051 23 models selected 
    53052 
    53053 > select add #2.170
    53054 
    53055 24 models selected 
    53056 
    53057 > select add #2.208
    53058 
    53059 25 models selected 
    53060 
    53061 > select add #2.42
    53062 
    53063 26 models selected 
    53064 
    53065 > select add #2.107
    53066 
    53067 27 models selected 
    53068 
    53069 > select add #2.33
    53070 
    53071 28 models selected 
    53072 
    53073 > select add #2.136
    53074 
    53075 29 models selected 
    53076 
    53077 > select add #2.89
    53078 
    53079 30 models selected 
    53080 
    53081 > select add #2.30
    53082 
    53083 31 models selected 
    53084 
    53085 > select add #2.150
    53086 
    53087 32 models selected 
    53088 
    53089 > select add #2.114
    53090 
    53091 33 models selected 
    53092 
    53093 > select add #2.133
    53094 
    53095 34 models selected 
    53096 
    53097 > select add #2.237
    53098 
    53099 35 models selected 
    53100 
    53101 > select add #2.510
    53102 
    53103 36 models selected 
    53104 
    53105 > select add #2.112
    53106 
    53107 37 models selected 
    53108 
    53109 > select add #2.222
    53110 
    53111 38 models selected 
    53112 
    53113 > select add #2.40
    53114 
    53115 39 models selected 
    53116 
    53117 > select add #2.139
    53118 
    53119 40 models selected 
    53120 
    53121 > select add #2.163
    53122 
    53123 41 models selected 
    53124 
    53125 > select add #2.36
    53126 
    53127 42 models selected 
    53128 
    53129 > select add #2.216
    53130 
    53131 43 models selected 
    53132 
    53133 > select add #2.134
    53134 
    53135 44 models selected 
    53136 
    53137 > select add #2.142
    53138 
    53139 45 models selected 
    53140 
    53141 > select add #2.160
    53142 
    53143 46 models selected 
    53144 
    53145 > select add #2.106
    53146 
    53147 47 models selected 
    53148 
    53149 > select add #2.99
    53150 
    53151 48 models selected 
    53152 
    53153 > select add #2.300
    53154 
    53155 49 models selected 
    53156 
    53157 > select add #2.401
    53158 
    53159 50 models selected 
    53160 
    53161 > select add #2.322
    53162 
    53163 51 models selected 
    53164 
    53165 > select add #2.203
    53166 
    53167 52 models selected 
    53168 
    53169 > select add #2.235
    53170 
    53171 53 models selected 
    53172 
    53173 > select subtract #2.235
    53174 
    53175 52 models selected 
    53176 
    53177 > select add #2.449
    53178 
    53179 53 models selected 
    53180 
    53181 > select add #2.258
    53182 
    53183 54 models selected 
    53184 
    53185 > select add #2.193
    53186 
    53187 55 models selected 
    53188 
    53189 > select add #2.235
    53190 
    53191 56 models selected 
    53192 
    53193 > select add #2.321
    53194 
    53195 57 models selected 
    53196 
    53197 > select add #2.182
    53198 
    53199 58 models selected 
    53200 
    53201 > select add #2.207
    53202 
    53203 59 models selected 
    53204 
    53205 > select add #2.179
    53206 
    53207 60 models selected 
    53208 
    53209 > select add #2.23
    53210 
    53211 61 models selected 
    53212 
    53213 > select add #2.95
    53214 
    53215 62 models selected 
    53216 
    53217 > select add #2.144
    53218 
    53219 63 models selected 
    53220 
    53221 > select add #2.18
    53222 
    53223 64 models selected 
    53224 
    53225 > select add #2.419
    53226 
    53227 65 models selected 
    53228 
    53229 > select add #2.38
    53230 
    53231 66 models selected 
    53232 
    53233 > select add #2.31
    53234 
    53235 67 models selected 
    53236 
    53237 > select add #2.246
    53238 
    53239 68 models selected 
    53240 
    53241 > select add #2.13
    53242 
    53243 69 models selected 
    53244 
    53245 > select add #2.244
    53246 
    53247 70 models selected 
    53248 
    53249 > select add #2.292
    53250 
    53251 71 models selected 
    53252 
    53253 > select add #2.330
    53254 
    53255 72 models selected 
    53256 
    53257 > select add #2.240
    53258 
    53259 73 models selected 
    53260 
    53261 > select add #2.201
    53262 
    53263 74 models selected 
    53264 
    53265 > select add #2.3
    53266 
    53267 75 models selected 
    53268 
    53269 > select add #2.148
    53270 
    53271 76 models selected 
    53272 
    53273 > select add #2.45
    53274 
    53275 77 models selected 
    53276 
    53277 > select add #2.265
    53278 
    53279 78 models selected 
    53280 
    53281 > select add #2.390
    53282 
    53283 79 models selected 
    53284 Grouped 79 regions 
    53285 
    53286 > select add #2.138
    53287 
    53288 2 models selected 
    53289 
    53290 > select add #2.385
    53291 
    53292 3 models selected 
    53293 
    53294 > select add #2.49
    53295 
    53296 4 models selected 
    53297 
    53298 > select add #2.301
    53299 
    53300 5 models selected 
    53301 
    53302 > select add #2.12
    53303 
    53304 6 models selected 
    53305 
    53306 > select add #2.315
    53307 
    53308 7 models selected 
    53309 
    53310 > select add #2.313
    53311 
    53312 8 models selected 
    53313 
    53314 > select add #2.34
    53315 
    53316 9 models selected 
    53317 
    53318 > select subtract #2.385
    53319 
    53320 8 models selected 
    53321 
    53322 > select add #2.122
    53323 
    53324 9 models selected 
    53325 
    53326 > select add #2.305
    53327 
    53328 10 models selected 
    53329 
    53330 > select add #2.156
    53331 
    53332 11 models selected 
    53333 
    53334 > select subtract #2.156
    53335 
    53336 10 models selected 
    53337 
    53338 > select add #2.323
    53339 
    53340 11 models selected 
    53341 
    53342 > select add #2.156
    53343 
    53344 12 models selected 
    53345 
    53346 > select add #2.152
    53347 
    53348 13 models selected 
    53349 
    53350 > select add #2.293
    53351 
    53352 14 models selected 
    53353 Grouped 14 regions 
    53354 
    53355 > select clear
    53356 
    53357 > select #2.1
    53358 
    53359 1 model selected 
    53360 
    53361 > select add #2.487
    53362 
    53363 2 models selected 
    53364 Grouped 2 regions 
    53365 
    53366 > select add #2.283
    53367 
    53368 2 models selected 
    53369 
    53370 > select add #2.441
    53371 
    53372 3 models selected 
    53373 
    53374 > select add #2.457
    53375 
    53376 4 models selected 
    53377 
    53378 > select add #2.316
    53379 
    53380 5 models selected 
    53381 Grouped 5 regions 
    53382 
    53383 > select clear
    53384 
    53385 Drag select of 50595, 1440 of 86216 triangles, 50625, 2312 of 64668 triangles,
    53386 50703, 9854 of 48856 triangles, 50718, 6774 of 56308 triangles, 50642, 26564
    53387 of 45568 triangles, 50694, 13036 of 51768 triangles, 50639, 1050 of 53396
    53388 triangles, 50613, 11192 of 51080 triangles, 50608, 32799 of 51844 triangles,
    53389 50592, 39492 of 52252 triangles, 50601, 1174 of 53600 triangles, 50630, 4541
    53390 of 43048 triangles, 50518, 2727 of 35744 triangles, 50582, 23960 of 33860
    53391 triangles, 50649, 32025 of 44352 triangles, 50710, 1784 of 31260 triangles,
    53392 50622, 13627 of 48372 triangles, 50637, 2441 of 28260 triangles, 50756, 156 of
    53393 37176 triangles, 50742, 4464 of 25104 triangles, 49784, 328 of 21576
    53394 triangles, 50765, 2332 of 31760 triangles, 50597, 19795 of 24652 triangles,
    53395 50607, 20490 of 25184 triangles, 50536, 18475 of 28036 triangles, 50650, 322
    53396 of 25876 triangles, 50653, 346 of 26040 triangles, 50523, 10341 of 13084
    53397 triangles, 50725, 796 of 23616 triangles, 50617, 238 of 17452 triangles,
    53398 50749, 3547 of 22184 triangles, 50614, 1719 of 21132 triangles, 49644, 4980 of
    53399 13992 triangles, 49838, 1110 of 9144 triangles, 50779, 1004 of 16216
    53400 triangles, 49831, 12392 of 15304 triangles, 50712, 8531 of 14916 triangles,
    53401 50538, 2786 of 11440 triangles, 50588, 2373 of 11052 triangles, 50629, 1905 of
    53402 11804 triangles, 50556, 1156 of 9924 triangles, 50730, 6174 of 9832 triangles,
    53403 50527, 8606 of 9340 triangles, 50720, 7364 of 11340 triangles, 50750, 2319 of
    53404 9040 triangles, 49681, 50716, 265 of 7632 triangles, 50598, 8501 of 8712
    53405 triangles, 50455, 117 of 6572 triangles, 50600, 375 of 8704 triangles, 50604,
    53406 4479 of 7340 triangles, 50734, 5593 of 7192 triangles, 50398, 814 of 6028
    53407 triangles, 50238, 6252 of 6652 triangles, 49810, 2031 of 6908 triangles,
    53408 50774, 4201 of 6520 triangles, 50764, 50732, 533 of 6840 triangles, 47684,
    53409 5212 of 5532 triangles, 50655, 6490 of 6660 triangles, 50522, 2426 of 6408
    53410 triangles, 49705, 3118 of 5296 triangles, 50302, 4324 of 4892 triangles,
    53411 46163, 3083 of 3152 triangles, 50731, 4500 of 4820 triangles, 50221, 1131 of
    53412 3844 triangles, 50704, 328 of 3836 triangles, 50773, 49964, 3131 of 4336
    53413 triangles, 46533, 906 of 2912 triangles, 50575, 50129, 452 of 2640 triangles,
    53414 50501, 83 of 3140 triangles, 50176, 263 of 2816 triangles, 50672, 791 of 2280
    53415 triangles, 50326, 50463, 50482, 1227 of 1604 triangles, 50577, 69 of 1568
    53416 triangles, 50315, 49603 
    53417 
    53418 > select clear
    53419 
    53420 > select #2.231
    53421 
    53422 1 model selected 
    53423 
    53424 > select add #2.1
    53425 
    53426 2 models selected 
    53427 
    53428 > select add #2.212
    53429 
    53430 3 models selected 
    53431 
    53432 > select add #2.496
    53433 
    53434 4 models selected 
    53435 
    53436 > select add #2.213
    53437 
    53438 5 models selected 
    53439 
    53440 > select add #2.191
    53441 
    53442 6 models selected 
    53443 
    53444 > select add #2.340
    53445 
    53446 7 models selected 
    53447 
    53448 > select add #2.274
    53449 
    53450 8 models selected 
    53451 
    53452 > select add #2.229
    53453 
    53454 9 models selected 
    53455 
    53456 > select add #2.288
    53457 
    53458 10 models selected 
    53459 
    53460 > select add #2.189
    53461 
    53462 11 models selected 
    53463 Grouped 11 regions 
    53464 
    53465 > select #2.1
    53466 
    53467 1 model selected 
    53468 
    53469 > select add #2.373
    53470 
    53471 2 models selected 
    53472 
    53473 > select add #2.162
    53474 
    53475 3 models selected 
    53476 
    53477 > select add #2.285
    53478 
    53479 4 models selected 
    53480 
    53481 > select add #2.326
    53482 
    53483 5 models selected 
    53484 
    53485 > select add #2.310
    53486 
    53487 6 models selected 
    53488 Grouped 6 regions 
    53489 
    53490 > select add #2.608
    53491 
    53492 2 models selected 
    53493 
    53494 > select add #2.603
    53495 
    53496 3 models selected 
    53497 Grouped 3 regions 
    53498 
    53499 > select clear
    53500 
    53501 > select #2.1
    53502 
    53503 1 model selected 
    53504 Showing 331 region surfaces 
    53505 Opened Rev-CJFlgYPlfAB-2.1A_imasked as #17, grid size 200,200,200, pixel 2.14,
    53506 shown at step 1, values float32 
    53507 Segmenting Rev-CJFlgYPlfAB-2.1A_imasked, density threshold 0.007113 
    53508 Showing 296 region surfaces 
    53509 20795 watershed regions, grouped to 296 regions 
    53510 Showing Rev-CJFlgYPlfAB-2.seg - 296 regions, 296 surfaces 
    53511 
    53512 > select #2.90
    53513 
    53514 1 model selected 
    53515 
    53516 > select add #2.20
    53517 
    53518 2 models selected 
    53519 
    53520 > select add #2.281
    53521 
    53522 3 models selected 
    53523 
    53524 > select add #2.276
    53525 
    53526 4 models selected 
    53527 
    53528 > select add #2.192
    53529 
    53530 5 models selected 
    53531 
    53532 > select add #2.269
    53533 
    53534 6 models selected 
    53535 
    53536 > select add #2.258
    53537 
    53538 7 models selected 
    53539 
    53540 > select add #2.215
    53541 
    53542 8 models selected 
    53543 
    53544 > select add #2.105
    53545 
    53546 9 models selected 
    53547 Grouped 9 regions 
    53548 
    53549 > hide #!17 models
    53550 
    53551 > select add #2.10
    53552 
    53553 2 models selected 
    53554 
    53555 > select add #2.8
    53556 
    53557 3 models selected 
    53558 
    53559 > select add #2.177
    53560 
    53561 4 models selected 
    53562 
    53563 > select add #2.211
    53564 
    53565 5 models selected 
    53566 
    53567 > select add #2.101
    53568 
    53569 6 models selected 
    53570 
    53571 > select add #2.154
    53572 
    53573 7 models selected 
    53574 
    53575 > select add #2.97
    53576 
    53577 8 models selected 
    53578 
    53579 > select add #2.19
    53580 
    53581 9 models selected 
    53582 
    53583 > select add #2.46
    53584 
    53585 10 models selected 
    53586 
    53587 > select add #2.86
    53588 
    53589 11 models selected 
    53590 
    53591 > select add #2.78
    53592 
    53593 12 models selected 
    53594 
    53595 > select add #2.113
    53596 
    53597 13 models selected 
    53598 
    53599 > select add #2.82
    53600 
    53601 14 models selected 
    53602 
    53603 > select add #2.79
    53604 
    53605 15 models selected 
    53606 
    53607 > select add #2.15
    53608 
    53609 16 models selected 
    53610 
    53611 > select add #2.247
    53612 
    53613 17 models selected 
    53614 
    53615 > select add #2.148
    53616 
    53617 18 models selected 
    53618 
    53619 > select add #2.169
    53620 
    53621 19 models selected 
    53622 
    53623 > select add #2.115
    53624 
    53625 20 models selected 
    53626 
    53627 > select add #2.107
    53628 
    53629 21 models selected 
    53630 
    53631 > select add #2.149
    53632 
    53633 22 models selected 
    53634 
    53635 > select add #2.178
    53636 
    53637 23 models selected 
    53638 
    53639 > select add #2.241
    53640 
    53641 24 models selected 
    53642 
    53643 > select add #2.226
    53644 
    53645 25 models selected 
    53646 
    53647 > select add #2.190
    53648 
    53649 26 models selected 
    53650 
    53651 > select add #2.261
    53652 
    53653 27 models selected 
    53654 
    53655 > select add #2.145
    53656 
    53657 28 models selected 
    53658 
    53659 > select add #2.196
    53660 
    53661 29 models selected 
    53662 
    53663 > select add #2.156
    53664 
    53665 30 models selected 
    53666 
    53667 > select subtract #2.156
    53668 
    53669 29 models selected 
    53670 
    53671 > select add #2.156
    53672 
    53673 30 models selected 
    53674 
    53675 > select add #2.214
    53676 
    53677 31 models selected 
    53678 
    53679 > select add #2.175
    53680 
    53681 32 models selected 
    53682 
    53683 > select add #2.127
    53684 
    53685 33 models selected 
    53686 
    53687 > select add #2.210
    53688 
    53689 34 models selected 
    53690 
    53691 > select add #2.118
    53692 
    53693 35 models selected 
    53694 
    53695 > select add #2.172
    53696 
    53697 36 models selected 
    53698 
    53699 > select add #2.59
    53700 
    53701 37 models selected 
    53702 
    53703 > select add #2.184
    53704 
    53705 38 models selected 
    53706 
    53707 > select add #2.125
    53708 
    53709 39 models selected 
    53710 
    53711 > select add #2.235
    53712 
    53713 40 models selected 
    53714 
    53715 > select add #2.179
    53716 
    53717 41 models selected 
    53718 
    53719 > select add #2.99
    53720 
    53721 42 models selected 
    53722 
    53723 > select add #2.248
    53724 
    53725 43 models selected 
    53726 
    53727 > select add #2.147
    53728 
    53729 44 models selected 
    53730 
    53731 > select add #2.232
    53732 
    53733 45 models selected 
    53734 
    53735 > select add #2.189
    53736 
    53737 46 models selected 
    53738 
    53739 > select add #2.186
    53740 
    53741 47 models selected 
    53742 
    53743 > select add #2.209
    53744 
    53745 48 models selected 
    53746 
    53747 > select subtract #2.178
    53748 
    53749 47 models selected 
    53750 
    53751 > select add #2.178
    53752 
    53753 48 models selected 
    53754 
    53755 > select add #2.275
    53756 
    53757 49 models selected 
    53758 
    53759 > select add #2.252
    53760 
    53761 50 models selected 
    53762 
    53763 > select add #2.277
    53764 
    53765 51 models selected 
    53766 
    53767 > select add #2.270
    53768 
    53769 52 models selected 
    53770 
    53771 > select add #2.284
    53772 
    53773 53 models selected 
    53774 
    53775 > select add #2.285
    53776 
    53777 54 models selected 
    53778 Grouped 54 regions 
    53779 
    53780 > select add #2.57
    53781 
    53782 2 models selected 
    53783 
    53784 > select add #2.95
    53785 
    53786 3 models selected 
    53787 
    53788 > select add #2.36
    53789 
    53790 4 models selected 
    53791 
    53792 > select add #2.120
    53793 
    53794 5 models selected 
    53795 
    53796 > select add #2.1
    53797 
    53798 6 models selected 
    53799 
    53800 > select add #2.182
    53801 
    53802 7 models selected 
    53803 
    53804 > select add #2.140
    53805 
    53806 8 models selected 
    53807 
    53808 > select add #2.16
    53809 
    53810 9 models selected 
    53811 
    53812 > select add #2.231
    53813 
    53814 10 models selected 
    53815 
    53816 > select add #2.71
    53817 
    53818 11 models selected 
    53819 
    53820 > select add #2.54
    53821 
    53822 12 models selected 
    53823 
    53824 > select add #2.109
    53825 
    53826 13 models selected 
    53827 
    53828 > select add #2.30
    53829 
    53830 14 models selected 
    53831 
    53832 > select add #2.108
    53833 
    53834 15 models selected 
    53835 
    53836 > select add #2.41
    53837 
    53838 16 models selected 
    53839 
    53840 > select add #2.155
    53841 
    53842 17 models selected 
    53843 
    53844 > select add #2.2
    53845 
    53846 18 models selected 
    53847 
    53848 > select add #2.198
    53849 
    53850 19 models selected 
    53851 
    53852 > select add #2.18
    53853 
    53854 20 models selected 
    53855 
    53856 > select add #2.89
    53857 
    53858 21 models selected 
    53859 
    53860 > select add #2.150
    53861 
    53862 22 models selected 
    53863 
    53864 > select add #2.4
    53865 
    53866 23 models selected 
    53867 
    53868 > select add #2.207
    53869 
    53870 24 models selected 
    53871 
    53872 > select add #2.227
    53873 
    53874 25 models selected 
    53875 Grouped 25 regions 
    53876 
    53877 > select clear
    53878 
    53879 > select #2.1
    53880 
    53881 1 model selected 
    53882 
    53883 > select add #2.257
    53884 
    53885 2 models selected 
    53886 
    53887 > select add #2.266
    53888 
    53889 3 models selected 
    53890 
    53891 > select add #2.128
    53892 
    53893 4 models selected 
    53894 
    53895 > select add #2.238
    53896 
    53897 5 models selected 
    53898 
    53899 > select add #2.153
    53900 
    53901 6 models selected 
    53902 
    53903 > select add #2.203
    53904 
    53905 7 models selected 
    53906 
    53907 > select add #2.201
    53908 
    53909 8 models selected 
    53910 
    53911 > select add #2.274
    53912 
    53913 9 models selected 
    53914 
    53915 > select add #2.75
    53916 
    53917 10 models selected 
    53918 
    53919 > select add #2.152
    53920 
    53921 11 models selected 
    53922 
    53923 > select add #2.94
    53924 
    53925 12 models selected 
    53926 
    53927 > select add #2.58
    53928 
    53929 13 models selected 
    53930 
    53931 > select add #2.170
    53932 
    53933 14 models selected 
    53934 
    53935 > select add #2.146
    53936 
    53937 15 models selected 
    53938 
    53939 > select add #2.69
    53940 
    53941 16 models selected 
    53942 
    53943 > select add #2.43
    53944 
    53945 17 models selected 
    53946 
    53947 > select add #2.202
    53948 
    53949 18 models selected 
    53950 
    53951 > select add #2.102
    53952 
    53953 19 models selected 
    53954 
    53955 > select add #2.139
    53956 
    53957 20 models selected 
    53958 
    53959 > select add #2.158
    53960 
    53961 21 models selected 
    53962 
    53963 > select add #2.6
    53964 
    53965 22 models selected 
    53966 
    53967 > select add #2.35
    53968 
    53969 23 models selected 
    53970 
    53971 > select add #2.195
    53972 
    53973 24 models selected 
    53974 
    53975 > select add #2.42
    53976 
    53977 25 models selected 
    53978 
    53979 > select add #2.114
    53980 
    53981 26 models selected 
    53982 
    53983 > select add #2.164
    53984 
    53985 27 models selected 
    53986 
    53987 > select add #2.138
    53988 
    53989 28 models selected 
    53990 
    53991 > select add #2.243
    53992 
    53993 29 models selected 
    53994 
    53995 > select add #2.130
    53996 
    53997 30 models selected 
    53998 
    53999 > select add #2.67
    54000 
    54001 31 models selected 
    54002 
    54003 > select add #2.265
    54004 
    54005 32 models selected 
    54006 
    54007 > select add #2.141
    54008 
    54009 33 models selected 
    54010 
    54011 > select add #2.104
    54012 
    54013 34 models selected 
    54014 
    54015 > select add #2.23
    54016 
    54017 35 models selected 
    54018 
    54019 > select add #2.73
    54020 
    54021 36 models selected 
    54022 
    54023 > select add #2.240
    54024 
    54025 37 models selected 
    54026 
    54027 > select add #2.291
    54028 
    54029 38 models selected 
    54030 
    54031 > select add #2.260
    54032 
    54033 39 models selected 
    54034 Grouped 39 regions 
    54035 
    54036 > select add #2.7
    54037 
    54038 2 models selected 
    54039 
    54040 > select add #2.206
    54041 
    54042 3 models selected 
    54043 
    54044 > select add #2.123
    54045 
    54046 4 models selected 
    54047 
    54048 > select add #2.171
    54049 
    54050 5 models selected 
    54051 
    54052 > select add #2.5
    54053 
    54054 6 models selected 
    54055 
    54056 > select add #2.221
    54057 
    54058 7 models selected 
    54059 Showing 173 region surfaces 
    54060 
    54061 > select clear
    54062 
    54063 > select #2.1
    54064 
    54065 1 model selected 
    54066 
    54067 > select #2.3
    54068 
    54069 1 model selected 
    54070 
    54071 > select add #2.12
    54072 
    54073 2 models selected 
    54074 
    54075 > select add #2.17
    54076 
    54077 3 models selected 
    54078 
    54079 > select add #2.11
    54080 
    54081 4 models selected 
    54082 Grouped 4 regions 
    54083 
    54084 > select #2.26
    54085 
    54086 1 model selected 
    54087 
    54088 > select add #2.121
    54089 
    54090 2 models selected 
    54091 
    54092 > select add #2.129
    54093 
    54094 3 models selected 
    54095 
    54096 > select add #2.106
    54097 
    54098 4 models selected 
    54099 
    54100 > select add #2.133
    54101 
    54102 5 models selected 
    54103 
    54104 > select add #2.45
    54105 
    54106 6 models selected 
    54107 
    54108 > select add #2.2
    54109 
    54110 7 models selected 
    54111 Grouped 7 regions 
    54112 
    54113 > select add #2.187
    54114 
    54115 2 models selected 
    54116 
    54117 > select add #2.216
    54118 
    54119 3 models selected 
    54120 
    54121 > select add #2.205
    54122 
    54123 4 models selected 
    54124 
    54125 > select add #2.251
    54126 
    54127 5 models selected 
    54128 
    54129 > select add #2.289
    54130 
    54131 6 models selected 
    54132 
    54133 > select add #2.212
    54134 
    54135 7 models selected 
    54136 
    54137 > select add #2.229
    54138 
    54139 8 models selected 
    54140 
    54141 > select add #2.282
    54142 
    54143 9 models selected 
    54144 
    54145 > select add #2.220
    54146 
    54147 10 models selected 
    54148 
    54149 > select add #2.222
    54150 
    54151 11 models selected 
    54152 
    54153 > select add #2.283
    54154 
    54155 12 models selected 
    54156 
    54157 > select add #2.262
    54158 
    54159 13 models selected 
    54160 
    54161 > select add #2.219
    54162 
    54163 14 models selected 
    54164 
    54165 > select add #2.237
    54166 
    54167 15 models selected 
    54168 
    54169 > select add #2.246
    54170 
    54171 16 models selected 
    54172 
    54173 > select add #2.74
    54174 
    54175 17 models selected 
    54176 
    54177 > select add #2.1
    54178 
    54179 18 models selected 
    54180 
    54181 > select add #2.204
    54182 
    54183 19 models selected 
    54184 
    54185 > select add #2.174
    54186 
    54187 20 models selected 
    54188 Grouped 20 regions 
    54189 
    54190 > select clear
    54191 
    54192 > select #2.1
    54193 
    54194 1 model selected 
    54195 
    54196 > select add #2.272
    54197 
    54198 2 models selected 
    54199 
    54200 > select add #2.253
    54201 
    54202 3 models selected 
    54203 
    54204 > select add #2.197
    54205 
    54206 4 models selected 
    54207 
    54208 > select add #2.263
    54209 
    54210 5 models selected 
    54211 
    54212 > select add #2.234
    54213 
    54214 6 models selected 
    54215 
    54216 > select add #2.267
    54217 
    54218 7 models selected 
    54219 
    54220 > select add #2.208
    54221 
    54222 8 models selected 
    54223 
    54224 > select add #2.206
    54225 
    54226 9 models selected 
    54227 
    54228 > select add #2.171
    54229 
    54230 10 models selected 
    54231 
    54232 > select add #2.123
    54233 
    54234 11 models selected 
    54235 
    54236 > select add #2.221
    54237 
    54238 12 models selected 
    54239 
    54240 > select add #2.5
    54241 
    54242 13 models selected 
    54243 
    54244 > select add #2.259
    54245 
    54246 14 models selected 
    54247 
    54248 > select add #2.13
    54249 
    54250 15 models selected 
    54251 
    54252 > select add #2.14
    54253 
    54254 16 models selected 
    54255 
    54256 > select subtract #2.272
    54257 
    54258 15 models selected 
    54259 
    54260 > select add #2.33
    54261 
    54262 16 models selected 
    54263 
    54264 > select add #2.272
    54265 
    54266 17 models selected 
    54267 
    54268 > select subtract #2.253
    54269 
    54270 16 models selected 
    54271 
    54272 > select subtract #2.263
    54273 
    54274 15 models selected 
    54275 
    54276 > select subtract #2.197
    54277 
    54278 14 models selected 
    54279 
    54280 > select add #2.263
    54281 
    54282 15 models selected 
    54283 
    54284 > select add #2.253
    54285 
    54286 16 models selected 
    54287 
    54288 > select subtract #2.234
    54289 
    54290 15 models selected 
    54291 
    54292 > select add #2.234
    54293 
    54294 16 models selected 
    54295 
    54296 > select add #2.197
    54297 
    54298 17 models selected 
    54299 
    54300 > select add #2.7
    54301 
    54302 18 models selected 
    54303 
    54304 > select add #2.271
    54305 
    54306 19 models selected 
    54307 
    54308 > select add #2.280
    54309 
    54310 20 models selected 
    54311 
    54312 > select add #2.250
    54313 
    54314 21 models selected 
    54315 
    54316 > select add #2.292
    54317 
    54318 22 models selected 
    54319 
    54320 > select add #2.287
    54321 
    54322 23 models selected 
    54323 Grouped 23 regions 
    54324 
    54325 > select clear
    54326 
    54327 > select #2.1
    54328 
    54329 1 model selected 
    54330 Opened Rev-CJFlgYPlfAB-2_imasked as #18, grid size 200,200,200, pixel 2.14,
    54331 shown at step 1, values float32 
    54332 
    54333 The cached device pixel ratio value was stale on window expose. Please file a
    54334 QTBUG which explains how to reproduce. 
    54335 
    54336 > save /Users/shoichitachiyama/Desktop/tmp/REDO/Others.mrc models #18
    54337 
    54338 Opened Rev-CJFlgYPlfAB-2_imasked as #19, grid size 200,200,200, pixel 2.14,
    54339 shown at step 1, values float32 
    54340 Segmenting Rev-CJFlgYPlfAB-2_imasked, density threshold 0.007113 
    54341 Showing 122 region surfaces 
    54342 7061 watershed regions, grouped to 122 regions 
    54343 Showing Rev-CJFlgYPlfAB-2_imasked.seg - 122 regions, 122 surfaces 
    54344 
    54345 > hide #!18 models
    54346 
    54347 > select #2.13
    54348 
    54349 1 model selected 
    54350 
    54351 > select add #2.38
    54352 
    54353 2 models selected 
    54354 
    54355 > select add #2.79
    54356 
    54357 3 models selected 
    54358 
    54359 > select add #2.17
    54360 
    54361 4 models selected 
    54362 
    54363 > select add #2.42
    54364 
    54365 5 models selected 
    54366 
    54367 > select add #2.46
    54368 
    54369 6 models selected 
    54370 
    54371 > select add #2.73
    54372 
    54373 7 models selected 
    54374 
    54375 > select add #2.9
    54376 
    54377 8 models selected 
    54378 
    54379 > select add #2.28
    54380 
    54381 9 models selected 
    54382 
    54383 > select add #2.80
    54384 
    54385 10 models selected 
    54386 
    54387 > select add #2.18
    54388 
    54389 11 models selected 
    54390 
    54391 > select add #2.53
    54392 
    54393 12 models selected 
    54394 
    54395 > select add #2.37
    54396 
    54397 13 models selected 
    54398 
    54399 > select add #2.7
    54400 
    54401 14 models selected 
    54402 
    54403 > select add #2.44
    54404 
    54405 15 models selected 
    54406 
    54407 > select add #2.29
    54408 
    54409 16 models selected 
    54410 
    54411 > select add #2.77
    54412 
    54413 17 models selected 
    54414 
    54415 > select add #2.70
    54416 
    54417 18 models selected 
    54418 
    54419 > select add #2.49
    54420 
    54421 19 models selected 
    54422 
    54423 > select add #2.25
    54424 
    54425 20 models selected 
    54426 
    54427 > select add #2.32
    54428 
    54429 21 models selected 
    54430 
    54431 > select add #2.31
    54432 
    54433 22 models selected 
    54434 Grouped 22 regions 
    54435 
    54436 > select #2.52
    54437 
    54438 1 model selected 
    54439 
    54440 > select add #2.7
    54441 
    54442 2 models selected 
    54443 Grouped 2 regions 
    54444 
    54445 > select clear
    54446 
    54447 > select #2.7
    54448 
    54449 1 model selected 
    54450 
    54451 > hide #!19 models
    54452 
    54453 > select add #2.61
    54454 
    54455 2 models selected 
    54456 
    54457 > select add #2.57
    54458 
    54459 3 models selected 
    54460 
    54461 > select add #2.23
    54462 
    54463 4 models selected 
    54464 
    54465 > select add #2.54
    54466 
    54467 5 models selected 
    54468 
    54469 > select add #2.21
    54470 
    54471 6 models selected 
    54472 
    54473 > select add #2.39
    54474 
    54475 7 models selected 
    54476 
    54477 > select add #2.60
    54478 
    54479 8 models selected 
    54480 
    54481 > select add #2.19
    54482 
    54483 9 models selected 
    54484 
    54485 > select add #2.87
    54486 
    54487 10 models selected 
    54488 
    54489 > select add #2.48
    54490 
    54491 11 models selected 
    54492 
    54493 > select add #2.27
    54494 
    54495 12 models selected 
    54496 Grouped 12 regions 
    54497 
    54498 > select add #2.30
    54499 
    54500 2 models selected 
    54501 
    54502 > select add #2.74
    54503 
    54504 3 models selected 
    54505 
    54506 > select add #2.40
    54507 
    54508 4 models selected 
    54509 
    54510 > select add #2.65
    54511 
    54512 5 models selected 
    54513 
    54514 > select add #2.34
    54515 
    54516 6 models selected 
    54517 
    54518 > select add #2.5
    54519 
    54520 7 models selected 
    54521 
    54522 > select add #2.4
    54523 
    54524 8 models selected 
    54525 
    54526 > select add #2.6
    54527 
    54528 9 models selected 
    54529 
    54530 > select add #2.33
    54531 
    54532 10 models selected 
    54533 
    54534 > select add #2.62
    54535 
    54536 11 models selected 
    54537 
    54538 > select add #2.43
    54539 
    54540 12 models selected 
    54541 Grouped 12 regions 
    54542 
    54543 > select add #2.58
    54544 
    54545 2 models selected 
    54546 Grouped 2 regions 
    54547 
    54548 > select #2.12
    54549 
    54550 1 model selected 
    54551 
    54552 > select add #2.4
    54553 
    54554 2 models selected 
    54555 Grouped 2 regions 
    54556 
    54557 > select clear
    54558 
    54559 > select #2.104
    54560 
    54561 1 model selected 
    54562 
    54563 > select add #2.96
    54564 
    54565 2 models selected 
    54566 
    54567 > select add #2.110
    54568 
    54569 3 models selected 
    54570 
    54571 > select clear
    54572 
    54573 > select #2.4
    54574 
    54575 1 model selected 
    54576 
    54577 > select add #2.20
    54578 
    54579 2 models selected 
    54580 
    54581 > select add #2.11
    54582 
    54583 3 models selected 
    54584 
    54585 > select add #2.86
    54586 
    54587 4 models selected 
    54588 
    54589 > select add #2.56
    54590 
    54591 5 models selected 
    54592 
    54593 > select add #2.59
    54594 
    54595 6 models selected 
    54596 
    54597 > select add #2.16
    54598 
    54599 7 models selected 
    54600 
    54601 > select add #2.45
    54602 
    54603 8 models selected 
    54604 
    54605 > select add #2.92
    54606 
    54607 9 models selected 
    54608 Grouped 9 regions 
    54609 
    54610 > select #2.26
    54611 
    54612 1 model selected 
    54613 
    54614 > select add #2.67
    54615 
    54616 2 models selected 
    54617 
    54618 > select add #2.69
    54619 
    54620 3 models selected 
    54621 
    54622 > select add #2.71
    54623 
    54624 4 models selected 
    54625 Grouped 4 regions 
    54626 
    54627 > select add #2.4
    54628 
    54629 2 models selected 
    54630 Grouped 2 regions 
    54631 
    54632 > select #2.101
    54633 
    54634 1 model selected 
    54635 
    54636 > select add #2.64
    54637 
    54638 2 models selected 
    54639 
    54640 > select add #2.113
    54641 
    54642 3 models selected 
    54643 
    54644 > select add #2.102
    54645 
    54646 4 models selected 
    54647 
    54648 > select add #2.108
    54649 
    54650 5 models selected 
    54651 
    54652 > select add #2.8
    54653 
    54654 6 models selected 
    54655 
    54656 > select add #2.63
    54657 
    54658 7 models selected 
    54659 Grouped 7 regions 
    54660 
    54661 > select #2.85
    54662 
    54663 1 model selected 
    54664 
    54665 > select add #2.81
    54666 
    54667 2 models selected 
    54668 
    54669 > select add #2.90
    54670 
    54671 3 models selected 
    54672 
    54673 > select add #2.89
    54674 
    54675 4 models selected 
    54676 
    54677 > select add #2.97
    54678 
    54679 5 models selected 
    54680 
    54681 > select add #2.10
    54682 
    54683 6 models selected 
    54684 Grouped 6 regions 
    54685 
    54686 > select add #2.4
    54687 
    54688 2 models selected 
    54689 Grouped 2 regions 
    54690 
    54691 > select #2.109
    54692 
    54693 1 model selected 
    54694 
    54695 > select add #2.75
    54696 
    54697 2 models selected 
    54698 
    54699 > select add #2.5
    54700 
    54701 3 models selected 
    54702 
    54703 > select add #2.4
    54704 
    54705 4 models selected 
    54706 
    54707 > select add #2.15
    54708 
    54709 5 models selected 
    54710 Grouped 5 regions 
    54711 
    54712 > select #2.76
    54713 
    54714 1 model selected 
    54715 
    54716 > select add #2.98
    54717 
    54718 2 models selected 
    54719 
    54720 > select add #2.112
    54721 
    54722 3 models selected 
    54723 Grouped 3 regions 
    54724 
    54725 > select add #2.4
    54726 
    54727 2 models selected 
    54728 Grouped 2 regions 
    54729 
    54730 > select #2.114
    54731 
    54732 1 model selected 
    54733 
    54734 > select add #2.95
    54735 
    54736 2 models selected 
    54737 
    54738 > select add #2.14
    54739 
    54740 3 models selected 
    54741 
    54742 > select add #2.100
    54743 
    54744 4 models selected 
    54745 
    54746 > select add #2.4
    54747 
    54748 5 models selected 
    54749 
    54750 > select add #2.88
    54751 
    54752 6 models selected 
    54753 
    54754 > select add #2.3
    54755 
    54756 7 models selected 
    54757 
    54758 > select add #2.111
    54759 
    54760 8 models selected 
    54761 
    54762 > select add #2.2
    54763 
    54764 9 models selected 
    54765 
    54766 > select subtract #2.2
    54767 
    54768 8 models selected 
    54769 Grouped 8 regions 
    54770 
    54771 > select #2.115
    54772 
    54773 1 model selected 
    54774 
    54775 > select add #2.94
    54776 
    54777 2 models selected 
    54778 
    54779 > select add #2.3
    54780 
    54781 3 models selected 
    54782 Grouped 3 regions 
    54783 
    54784 > select clear
    54785 
    54786 > select #2.91
    54787 
    54788 1 model selected 
    54789 
    54790 > select add #2.78
    54791 
    54792 2 models selected 
    54793 
    54794 > select add #2.82
    54795 
    54796 3 models selected 
    54797 
    54798 > select add #2.93
    54799 
    54800 4 models selected 
    54801 
    54802 > select add #2.72
    54803 
    54804 5 models selected 
    54805 
    54806 > select add #2.107
    54807 
    54808 6 models selected 
    54809 
    54810 > select add #2.83
    54811 
    54812 7 models selected 
    54813 
    54814 > select add #2.105
    54815 
    54816 8 models selected 
    54817 
    54818 > select add #2.106
    54819 
    54820 9 models selected 
    54821 
    54822 > select clear
    54823 
    54824 > select #2.41
    54825 
    54826 1 model selected 
    54827 
    54828 > select add #2.3
    54829 
    54830 2 models selected 
    54831 
    54832 > select add #2.117
    54833 
    54834 3 models selected 
    54835 Grouped 3 regions 
    54836 
    54837 > select #2.2
    54838 
    54839 1 model selected 
    54840 Ungrouped to 2 regions 
    54841 
    54842 > select #2.4
    54843 
    54844 1 model selected 
    54845 Ungrouped to 18 regions 
    54846 
    54847 > select #2.19
    54848 
    54849 1 model selected 
    54850 
    54851 > select add #2.18
    54852 
    54853 2 models selected 
    54854 
    54855 > select #2.18
    54856 
    54857 1 model selected 
    54858 Ungrouped to 6 regions 
    54859 Ungrouped to 0 regions 
    54860 
    54861 > select #2.19
    54862 
    54863 1 model selected 
    54864 
    54865 > select add #2.8
    54866 
    54867 2 models selected 
    54868 
    54869 > select add #2.17
    54870 
    54871 3 models selected 
    54872 
    54873 > select add #2.10
    54874 
    54875 4 models selected 
    54876 
    54877 > select add #2.2
    54878 
    54879 5 models selected 
    54880 
    54881 > select add #2.26
    54882 
    54883 6 models selected 
    54884 Grouped 6 regions 
    54885 
    54886 > select add #2.3
    54887 
    54888 2 models selected 
    54889 Grouped 2 regions 
    54890 
    54891 > select #2.7
    54892 
    54893 1 model selected 
    54894 
    54895 > select add #2.2
    54896 
    54897 2 models selected 
    54898 
    54899 > select add #2.14
    54900 
    54901 3 models selected 
    54902 Grouped 3 regions 
    54903 
    54904 > select #2.2
    54905 
    54906 1 model selected 
    54907 Opened Rev-CJFlgYPlfAB-2_imasked_imasked as #20, grid size 200,200,200, pixel
    54908 2.14, shown at step 1, values float32 
    54909 Segmenting Rev-CJFlgYPlfAB-2_imasked_imasked, density threshold 0.007113 
    54910 Showing 89 region surfaces 
    54911 5462 watershed regions, grouped to 89 regions 
    54912 Showing Rev-CJFlgYPlfAB-2_imasked_imasked.seg - 89 regions, 89 surfaces 
    54913 
    54914 > hide #!2 models
    54915 
    54916 > volume gaussian #20 sDev 4
    54917 
    54918 Opened Rev-CJFlgYPlfAB-2_imasked_imasked gaussian as #21, grid size
    54919 200,200,200, pixel 2.14, shown at step 1, values float32 
    54920 
    54921 > volume #21 level 0.002865
    54922 
    54923 > close #21
    54924 
    54925 > volume gaussian #20 sDev 2
    54926 
    54927 Opened Rev-CJFlgYPlfAB-2_imasked_imasked gaussian as #21, grid size
    54928 200,200,200, pixel 2.14, shown at step 1, values float32 
    54929 
    54930 > volume #21 level 0.005583
    54931 
    54932 > volume #21 level 0.00407
    54933 
    54934 > close #21
    54935 
    54936 > volume gaussian #20 sDev 3
    54937 
    54938 Opened Rev-CJFlgYPlfAB-2_imasked_imasked gaussian as #21, grid size
    54939 200,200,200, pixel 2.14, shown at step 1, values float32 
    54940 
    54941 > volume #21 level 0.002332
    54942 
    54943 > hide #!21 models
    54944 
    54945 > show #!2 models
    54946 
    54947 > select #2.41
    54948 
    54949 1 model selected 
    54950 
    54951 > select add #2.5
    54952 
    54953 2 models selected 
    54954 
    54955 > select add #2.31
    54956 
    54957 3 models selected 
    54958 
    54959 > select add #2.7
    54960 
    54961 4 models selected 
    54962 
    54963 > select add #2.39
    54964 
    54965 5 models selected 
    54966 
    54967 > select add #2.11
    54968 
    54969 6 models selected 
    54970 Grouped 6 regions 
    54971 
    54972 The cached device pixel ratio value was stale on window expose. Please file a
    54973 QTBUG which explains how to reproduce. 
    54974 
    54975 > save /Users/shoichitachiyama/Desktop/tmp/REDO/PflABCD_Cage.mrc models #20
    54976 
    54977 Opened PflABCD_Cage_imasked as #22, grid size 200,200,200, pixel 2.14, shown
    54978 at step 1, values float32 
    54979 
    54980 The cached device pixel ratio value was stale on window expose. Please file a
    54981 QTBUG which explains how to reproduce. 
    54982 
    54983 > save /Users/shoichitachiyama/Desktop/tmp/REDO/PflC.mrc models #22
    54984 
    54985 Opened PflABCD_Cage_imasked as #23, grid size 200,200,200, pixel 2.14, shown
    54986 at step 1, values float32 
    54987 Segmenting PflABCD_Cage_imasked, density threshold 0.007113 
    54988 Showing 83 region surfaces 
    54989 4415 watershed regions, grouped to 83 regions 
    54990 Showing PflABCD_Cage_imasked.seg - 83 regions, 83 surfaces 
    54991 
    54992 > hide #!22 models
    54993 
    54994 > select #2.36
    54995 
    54996 1 model selected 
    54997 
    54998 > select add #2.28
    54999 
    55000 2 models selected 
    55001 
    55002 > select add #2.59
    55003 
    55004 3 models selected 
    55005 
    55006 > select add #2.54
    55007 
    55008 4 models selected 
    55009 
    55010 > select add #2.12
    55011 
    55012 5 models selected 
    55013 
    55014 > select add #2.22
    55015 
    55016 6 models selected 
    55017 
    55018 > select add #2.60
    55019 
    55020 7 models selected 
    55021 
    55022 > select add #2.37
    55023 
    55024 8 models selected 
    55025 
    55026 > select add #2.13
    55027 
    55028 9 models selected 
    55029 
    55030 > select add #2.33
    55031 
    55032 10 models selected 
    55033 
    55034 > select add #2.58
    55035 
    55036 11 models selected 
    55037 
    55038 > select add #2.53
    55039 
    55040 12 models selected 
    55041 
    55042 > select add #2.18
    55043 
    55044 13 models selected 
    55045 
    55046 > hide #!23 models
    55047 
    55048 > show #!22 models
    55049 
    55050 > select clear
    55051 
    55052 > hide #!22 models
    55053 
    55054 Segmenting PflABCD_Cage.mrc, density threshold 0.007113 
    55055 Showing 89 region surfaces 
    55056 5462 watershed regions, grouped to 89 regions 
    55057 Showing PflABCD_Cage.seg - 89 regions, 89 surfaces 
    55058 
    55059 > select #2.11
    55060 
    55061 1 model selected 
    55062 
    55063 > select add #2.39
    55064 
    55065 2 models selected 
    55066 
    55067 > select add #2.7
    55068 
    55069 3 models selected 
    55070 
    55071 > select add #2.31
    55072 
    55073 4 models selected 
    55074 
    55075 > select add #2.5
    55076 
    55077 5 models selected 
    55078 
    55079 > select add #2.41
    55080 
    55081 6 models selected 
    55082 
    55083 > select add #2.59
    55084 
    55085 7 models selected 
    55086 
    55087 > select add #2.37
    55088 
    55089 8 models selected 
    55090 
    55091 > select add #2.64
    55092 
    55093 9 models selected 
    55094 
    55095 > select subtract #2.37
    55096 
    55097 8 models selected 
    55098 
    55099 > select add #2.37
    55100 
    55101 9 models selected 
    55102 
    55103 > select add #2.43
    55104 
    55105 10 models selected 
    55106 
    55107 > select add #2.66
    55108 
    55109 11 models selected 
    55110 
    55111 > select add #2.16
    55112 
    55113 12 models selected 
    55114 
    55115 > select add #2.21
    55116 
    55117 13 models selected 
    55118 
    55119 > select add #2.15
    55120 
    55121 14 models selected 
    55122 
    55123 > select add #2.60
    55124 
    55125 15 models selected 
    55126 
    55127 > select add #2.25
    55128 
    55129 16 models selected 
    55130 
    55131 > select add #2.65
    55132 
    55133 17 models selected 
    55134 
    55135 > select add #2.32
    55136 
    55137 18 models selected 
    55138 
    55139 > select add #2.42
    55140 
    55141 19 models selected 
    55142 Grouped 19 regions 
    55143 
    55144 > select #2.52
    55145 
    55146 1 model selected 
    55147 
    55148 > select #2.45
    55149 
    55150 1 model selected 
    55151 
    55152 > select add #2.48
    55153 
    55154 2 models selected 
    55155 
    55156 > select add #2.52
    55157 
    55158 3 models selected 
    55159 Ungrouped to 19 regions 
    55160 Ungrouped to 45 regions 
    55161 Ungrouped to 26 regions 
    55162 Ungrouped to 0 regions 
    55163 
    55164 > select #2.129
    55165 
    55166 1 model selected 
    55167 
    55168 > select add #2.5
    55169 
    55170 2 models selected 
    55171 
    55172 > select add #2.138
    55173 
    55174 3 models selected 
    55175 
    55176 > select add #2.11
    55177 
    55178 4 models selected 
    55179 
    55180 > select subtract #2.11
    55181 
    55182 3 models selected 
    55183 
    55184 > select add #2.139
    55185 
    55186 4 models selected 
    55187 
    55188 > select add #2.128
    55189 
    55190 5 models selected 
    55191 
    55192 > select add #2.130
    55193 
    55194 6 models selected 
    55195 
    55196 > select add #2.93
    55197 
    55198 7 models selected 
    55199 Grouped 7 regions 
    55200 
    55201 > select #2.11
    55202 
    55203 1 model selected 
    55204 Ungrouped to 0 regions 
    55205 
    55206 > select clear
    55207 
    55208 > select #2.5
    55209 
    55210 1 model selected 
    55211 
    55212 > select clear
    55213 
    55214 > select #2.5
    55215 
    55216 1 model selected 
    55217 Opened PflABCD_Cage_imasked as #24, grid size 200,200,200, pixel 2.14, shown
    55218 at step 1, values float32 
    55219 
    55220 The cached device pixel ratio value was stale on window expose. Please file a
    55221 QTBUG which explains how to reproduce. 
    55222 
    55223 > save /Users/shoichitachiyama/Desktop/tmp/REDO/PflC.mrc models #24
    55224 
    55225 Opened PflABCD_Cage_imasked as #25, grid size 200,200,200, pixel 2.14, shown
    55226 at step 1, values float32 
    55227 Segmenting PflABCD_Cage_imasked, density threshold 0.007113 
    55228 Showing 70 region surfaces 
    55229 4050 watershed regions, grouped to 70 regions 
    55230 Showing PflABCD_Cage_imasked.seg - 70 regions, 70 surfaces 
    55231 
    55232 > hide #!24 models
    55233 
    55234 > hide #!25 models
    55235 
    55236 > select #2.33
    55237 
    55238 1 model selected 
    55239 Ungrouped to 8 regions 
    55240 Ungrouped to 24 regions 
    55241 Ungrouped to 0 regions 
    55242 
    55243 > close #24-25
    55244 
    55245 > close #22
    55246 
    55247 Segmenting PflABCD_Cage_imasked, density threshold 0.007113 
    55248 Showing 83 region surfaces 
    55249 4415 watershed regions, grouped to 83 regions 
    55250 Showing PflABCD_Cage_imasked.seg - 83 regions, 83 surfaces 
    55251 
    55252 > show #!23 models
    55253 
    55254 > hide #!23 models
    55255 
    55256 > show #!20 models
    55257 
    55258 > hide #!2 models
    55259 
    55260 > show #!2 models
    55261 
    55262 > close #21,23
    55263 
    55264 Segmenting PflABCD_Cage.mrc, density threshold 0.007113 
    55265 Showing 89 region surfaces 
    55266 5462 watershed regions, grouped to 89 regions 
    55267 Showing PflABCD_Cage.seg - 89 regions, 89 surfaces 
    55268 
    55269 > select #2.28
    55270 
    55271 1 model selected 
    55272 
    55273 > select clear
    55274 
    55275 > select #2.41
    55276 
    55277 1 model selected 
    55278 
    55279 > select add #2.5
    55280 
    55281 2 models selected 
    55282 
    55283 > select add #2.31
    55284 
    55285 3 models selected 
    55286 
    55287 > select add #2.7
    55288 
    55289 4 models selected 
    55290 
    55291 > select add #2.39
    55292 
    55293 5 models selected 
    55294 
    55295 > select add #2.11
    55296 
    55297 6 models selected 
    55298 Grouped 6 regions 
    55299 
    55300 > hide #!20 models
    55301 
    55302 > select #2.48
    55303 
    55304 1 model selected 
    55305 
    55306 > select clear
    55307 
    55308 > select #2.45
    55309 
    55310 1 model selected 
    55311 
    55312 > select add #2.48
    55313 
    55314 2 models selected 
    55315 
    55316 > select add #2.52
    55317 
    55318 3 models selected 
    55319 Ungrouped to 19 regions 
    55320 Ungrouped to 45 regions 
    55321 Ungrouped to 26 regions 
    55322 Ungrouped to 0 regions 
    55323 
    55324 > select #2.32
    55325 
    55326 1 model selected 
    55327 
    55328 > select add #2.52
    55329 
    55330 2 models selected 
    55331 
    55332 > select add #2.107
    55333 
    55334 3 models selected 
    55335 
    55336 > select add #2.108
    55337 
    55338 4 models selected 
    55339 
    55340 > select add #2.104
    55341 
    55342 5 models selected 
    55343 
    55344 > select add #2.137
    55345 
    55346 6 models selected 
    55347 
    55348 > select add #2.139
    55349 
    55350 7 models selected 
    55351 
    55352 > select add #2.138
    55353 
    55354 8 models selected 
    55355 Showing 153 region surfaces 
    55356 
    55357 > select #2.5
    55358 
    55359 1 model selected 
    55360 
    55361 > select #2.52
    55362 
    55363 1 model selected 
    55364 
    55365 > select add #2.139
    55366 
    55367 2 models selected 
    55368 
    55369 > select add #2.138
    55370 
    55371 3 models selected 
    55372 
    55373 > select add #2.137
    55374 
    55375 4 models selected 
    55376 
    55377 > select add #2.95
    55378 
    55379 5 models selected 
    55380 
    55381 > select subtract #2.95
    55382 
    55383 4 models selected 
    55384 
    55385 > select add #2.149
    55386 
    55387 5 models selected 
    55388 
    55389 > select add #2.148
    55390 
    55391 6 models selected 
    55392 
    55393 > select add #2.104
    55394 
    55395 7 models selected 
    55396 
    55397 > select add #2.106
    55398 
    55399 8 models selected 
    55400 
    55401 > select add #2.107
    55402 
    55403 9 models selected 
    55404 
    55405 > select add #2.105
    55406 
    55407 10 models selected 
    55408 
    55409 > select add #2.140
    55410 
    55411 11 models selected 
    55412 
    55413 > select add #2.118
    55414 
    55415 12 models selected 
    55416 
    55417 > select add #2.119
    55418 
    55419 13 models selected 
    55420 Showing 153 region surfaces 
    55421 Segmenting PflABCD_Cage.mrc, density threshold 0.007113 
    55422 Showing 89 region surfaces 
    55423 5462 watershed regions, grouped to 89 regions 
    55424 Showing PflABCD_Cage.seg - 89 regions, 89 surfaces 
    55425 
    55426 > select #2.7
    55427 
    55428 1 model selected 
    55429 
    55430 > select add #2.39
    55431 
    55432 2 models selected 
    55433 
    55434 > select add #2.11
    55435 
    55436 3 models selected 
    55437 
    55438 > select add #2.31
    55439 
    55440 4 models selected 
    55441 
    55442 > select add #2.5
    55443 
    55444 5 models selected 
    55445 
    55446 > select add #2.41
    55447 
    55448 6 models selected 
    55449 
    55450 > select add #2.32
    55451 
    55452 7 models selected 
    55453 
    55454 > select add #2.60
    55455 
    55456 8 models selected 
    55457 
    55458 > select add #2.25
    55459 
    55460 9 models selected 
    55461 
    55462 > select add #2.43
    55463 
    55464 10 models selected 
    55465 
    55466 > select add #2.37
    55467 
    55468 11 models selected 
    55469 
    55470 > select add #2.59
    55471 
    55472 12 models selected 
    55473 
    55474 > select add #2.64
    55475 
    55476 13 models selected 
    55477 
    55478 > select add #2.66
    55479 
    55480 14 models selected 
    55481 
    55482 > select add #2.65
    55483 
    55484 15 models selected 
    55485 
    55486 > select add #2.42
    55487 
    55488 16 models selected 
    55489 Grouped 16 regions 
    55490 
    55491 > select #2.45
    55492 
    55493 1 model selected 
    55494 Ungrouped to 8 regions 
    55495 Ungrouped to 25 regions 
    55496 Ungrouped to 0 regions 
    55497 Showing 100 region surfaces 
    55498 
    55499 > select #2.5
    55500 
    55501 1 model selected 
    55502 
    55503 > select add #2.43
    55504 
    55505 2 models selected 
    55506 Grouped 2 regions 
    55507 
    55508 > select #2.48
    55509 
    55510 1 model selected 
    55511 
    55512 > select add #2.52
    55513 
    55514 2 models selected 
    55515 Ungrouped to 11 regions 
    55516 Ungrouped to 20 regions 
    55517 Ungrouped to 26 regions 
    55518 Ungrouped to 0 regions 
    55519 
    55520 > select #2.111
    55521 
    55522 1 model selected 
    55523 
    55524 > select #2.48
    55525 
    55526 1 model selected 
    55527 
    55528 > select add #2.52
    55529 
    55530 2 models selected 
    55531 
    55532 > select add #2.5
    55533 
    55534 3 models selected 
    55535 
    55536 > select add #2.111
    55537 
    55538 4 models selected 
    55539 
    55540 > select subtract #2.111
    55541 
    55542 3 models selected 
    55543 Grouped 3 regions 
    55544 
    55545 > select #2.144
    55546 
    55547 1 model selected 
    55548 
    55549 > select add #2.5
    55550 
    55551 2 models selected 
    55552 Grouped 2 regions 
    55553 
    55554 > select subtract #2.146
    55555 
    55556 137 models selected 
    55557 
    55558 > select clear
    55559 
    55560 > select #2.68
    55561 
    55562 1 model selected 
    55563 
    55564 > select add #2.73
    55565 
    55566 2 models selected 
    55567 
    55568 > select clear
    55569 
    55570 > select #2.77
    55571 
    55572 1 model selected 
    55573 
    55574 > select #2.72
    55575 
    55576 1 model selected 
    55577 
    55578 > select clear
    55579 
    55580 > select #2.72
    55581 
    55582 1 model selected 
    55583 
    55584 > select add #2.73
    55585 
    55586 2 models selected 
    55587 
    55588 > select add #2.68
    55589 
    55590 3 models selected 
    55591 Ungrouped to 10 regions 
    55592 Ungrouped to 56 regions 
    55593 
    55594 > select #2.185
    55595 
    55596 1 model selected 
    55597 
    55598 > select add #2.188
    55599 
    55600 2 models selected 
    55601 
    55602 > select add #2.73
    55603 
    55604 3 models selected 
    55605 
    55606 > select add #2.181
    55607 
    55608 4 models selected 
    55609 
    55610 > select add #2.184
    55611 
    55612 5 models selected 
    55613 
    55614 > select add #2.67
    55615 
    55616 6 models selected 
    55617 
    55618 > select subtract #2.67
    55619 
    55620 5 models selected 
    55621 
    55622 > select add #2.150
    55623 
    55624 6 models selected 
    55625 
    55626 > select subtract #2.150
    55627 
    55628 5 models selected 
    55629 
    55630 > select add #2.179
    55631 
    55632 6 models selected 
    55633 
    55634 > select add #2.182
    55635 
    55636 7 models selected 
    55637 
    55638 > select add #2.174
    55639 
    55640 8 models selected 
    55641 
    55642 > select add #2.201
    55643 
    55644 9 models selected 
    55645 
    55646 > select add #2.202
    55647 
    55648 10 models selected 
    55649 
    55650 > select add #2.198
    55651 
    55652 11 models selected 
    55653 
    55654 > select add #2.200
    55655 
    55656 12 models selected 
    55657 
    55658 > select add #2.169
    55659 
    55660 13 models selected 
    55661 
    55662 > select add #2.173
    55663 
    55664 14 models selected 
    55665 
    55666 > select add #2.171
    55667 
    55668 15 models selected 
    55669 
    55670 > select add #2.176
    55671 
    55672 16 models selected 
    55673 
    55674 > select subtract #2.176
    55675 
    55676 15 models selected 
    55677 
    55678 > select add #2.199
    55679 
    55680 16 models selected 
    55681 
    55682 > select add #2.168
    55683 
    55684 17 models selected 
    55685 Grouped 17 regions 
    55686 
    55687 > select #2.176
    55688 
    55689 1 model selected 
    55690 Ungrouped to 15 regions 
    55691 Ungrouped to 6 regions 
    55692 Ungrouped to 0 regions 
    55693 
    55694 > select #2.48
    55695 
    55696 1 model selected 
    55697 
    55698 > select add #2.181
    55699 
    55700 2 models selected 
    55701 
    55702 > select add #2.112
    55703 
    55704 3 models selected 
    55705 
    55706 > select add #2.119
    55707 
    55708 4 models selected 
    55709 
    55710 > select add #2.174
    55711 
    55712 5 models selected 
    55713 Grouped 5 regions 
    55714 
    55715 > select #2.180
    55716 
    55717 1 model selected 
    55718 Ungrouped to 4 regions 
    55719 Ungrouped to 2 regions 
    55720 
    55721 > select #2.48
    55722 
    55723 1 model selected 
    55724 
    55725 > select add #2.112
    55726 
    55727 2 models selected 
    55728 Grouped 2 regions 
    55729 
    55730 > select add #2.187
    55731 
    55732 2 models selected 
    55733 
    55734 > select add #2.72
    55735 
    55736 3 models selected 
    55737 Grouped 3 regions 
    55738 
    55739 > select #2.67
    55740 
    55741 1 model selected 
    55742 
    55743 > select add #2.68
    55744 
    55745 2 models selected 
    55746 
    55747 > select add #2.150
    55748 
    55749 3 models selected 
    55750 Ungrouped to 10 regions 
    55751 Ungrouped to 37 regions 
    55752 Ungrouped to 79 regions 
    55753 Ungrouped to 49 regions 
    55754 Showing 320 region surfaces 
    55755 
    55756 > select clear
    55757 
    55758 > select #2.48
    55759 
    55760 1 model selected 
    55761 
    55762 > select add #2.208
    55763 
    55764 2 models selected 
    55765 
    55766 > select add #2.216
    55767 
    55768 3 models selected 
    55769 
    55770 > select add #2.213
    55771 
    55772 4 models selected 
    55773 
    55774 > select add #2.68
    55775 
    55776 5 models selected 
    55777 
    55778 > select add #2.227
    55779 
    55780 6 models selected 
    55781 
    55782 > select add #2.228
    55783 
    55784 7 models selected 
    55785 Grouped 7 regions 
    55786 
    55787 > select add #2.288
    55788 
    55789 2 models selected 
    55790 
    55791 > select add #2.289
    55792 
    55793 3 models selected 
    55794 
    55795 > select add #2.244
    55796 
    55797 4 models selected 
    55798 
    55799 > select add #2.298
    55800 
    55801 5 models selected 
    55802 
    55803 > select add #2.243
    55804 
    55805 6 models selected 
    55806 Grouped 6 regions 
    55807 Showing 309 region surfaces 
    55808 
    55809 > select clear
    55810 
    55811 > select #2.48
    55812 
    55813 1 model selected 
    55814 
    55815 > select add #2.177
    55816 
    55817 2 models selected 
    55818 
    55819 > select add #2.170
    55820 
    55821 3 models selected 
    55822 Grouped 3 regions 
    55823 
    55824 > select clear
    55825 
    55826 > select #2.48
    55827 
    55828 1 model selected 
    55829 Opened PflABCD_Cage_imasked as #21, grid size 200,200,200, pixel 2.14, shown
    55830 at step 1, values float32 
    55831 Segmenting PflABCD_Cage_imasked, density threshold 0.007113 
    55832 Showing 89 region surfaces 
    55833 5341 watershed regions, grouped to 89 regions 
    55834 Showing PflABCD_Cage_imasked.seg - 89 regions, 89 surfaces 
    55835 
    55836 > hide #!2 models
    55837 
    55838 > show #!2 models
    55839 
    55840 > hide #!2 models
    55841 
    55842 The cached device pixel ratio value was stale on window expose. Please file a
    55843 QTBUG which explains how to reproduce. 
    55844 
    55845 > save /Users/shoichitachiyama/Desktop/tmp/REDO/PflABCD_Cage.mrc models #21
    55846 
    55847 Segmenting PflABCD_Cage.mrc, density threshold 0.007113 
    55848 Showing 89 region surfaces 
    55849 5341 watershed regions, grouped to 89 regions 
    55850 Showing PflABCD_Cage.seg - 89 regions, 89 surfaces 
    55851 
    55852 > volume gaussian #21 sDev 2.5
    55853 
    55854 Opened PflABCD_Cage.mrc gaussian as #22, grid size 200,200,200, pixel 2.14,
    55855 shown at step 1, values float32 
    55856 
    55857 > hide #!2 models
    55858 
    55859 > volume #22 level 0.005564
    55860 
    55861 > volume #22 level 0.003558
    55862 
    55863 > close #22
    55864 
    55865 > show #!2 models
    55866 
    55867 > select #2.42
    55868 
    55869 1 model selected 
    55870 
    55871 > select #2.11
    55872 
    55873 1 model selected 
    55874 
    55875 > select add #2.39
    55876 
    55877 2 models selected 
    55878 
    55879 > select add #2.7
    55880 
    55881 3 models selected 
    55882 
    55883 > select add #2.31
    55884 
    55885 4 models selected 
    55886 
    55887 > select add #2.5
    55888 
    55889 5 models selected 
    55890 
    55891 > select add #2.41
    55892 
    55893 6 models selected 
    55894 
    55895 > select add #2.52
    55896 
    55897 7 models selected 
    55898 
    55899 > select add #2.48
    55900 
    55901 8 models selected 
    55902 
    55903 > select add #2.45
    55904 
    55905 9 models selected 
    55906 Grouped 9 regions 
    55907 Opened PflABCD_Cage_imasked as #22, grid size 200,200,200, pixel 2.14, shown
    55908 at step 1, values float32 
    55909 
    55910 The cached device pixel ratio value was stale on window expose. Please file a
    55911 QTBUG which explains how to reproduce. 
    55912 
    55913 > save /Users/shoichitachiyama/Desktop/tmp/REDO/PflCD.mrc models #22
    55914 
    55915 Opened PflABCD_Cage_imasked as #23, grid size 200,200,200, pixel 2.14, shown
    55916 at step 1, values float32 
    55917 Segmenting PflABCD_Cage_imasked, density threshold 0.007113 
    55918 Showing 80 region surfaces 
    55919 4222 watershed regions, grouped to 80 regions 
    55920 Showing PflABCD_Cage_imasked.seg - 80 regions, 80 surfaces 
    55921 
    55922 > hide #!22 models
    55923 
    55924 > hide #!23 models
    55925 
    55926 > select #2.36
    55927 
    55928 1 model selected 
    55929 
    55930 > select add #2.28
    55931 
    55932 2 models selected 
    55933 
    55934 > select add #2.56
    55935 
    55936 3 models selected 
    55937 
    55938 > select add #2.51
    55939 
    55940 4 models selected 
    55941 
    55942 > select add #2.22
    55943 
    55944 5 models selected 
    55945 
    55946 > select add #2.57
    55947 
    55948 6 models selected 
    55949 
    55950 > select add #2.37
    55951 
    55952 7 models selected 
    55953 
    55954 > select add #2.33
    55955 
    55956 8 models selected 
    55957 
    55958 > select add #2.50
    55959 
    55960 9 models selected 
    55961 
    55962 > select add #2.55
    55963 
    55964 10 models selected 
    55965 
    55966 > select add #2.18
    55967 
    55968 11 models selected 
    55969 
    55970 > select add #2.13
    55971 
    55972 12 models selected 
    55973 
    55974 > select add #2.12
    55975 
    55976 13 models selected 
    55977 
    55978 > select add #2.31
    55979 
    55980 14 models selected 
    55981 
    55982 > select add #2.24
    55983 
    55984 15 models selected 
    55985 
    55986 > select add #2.25
    55987 
    55988 16 models selected 
    55989 Grouped 16 regions 
    55990 Opened PflABCD_Cage_imasked_imasked as #24, grid size 200,200,200, pixel 2.14,
    55991 shown at step 1, values float32 
    55992 
    55993 The cached device pixel ratio value was stale on window expose. Please file a
    55994 QTBUG which explains how to reproduce. 
    55995 
    55996 > save /Users/shoichitachiyama/Desktop/tmp/REDO/PflC.mrc models #24
    55997 
    55998 Opened PflABCD_Cage_imasked_imasked as #25, grid size 200,200,200, pixel 2.14,
    55999 shown at step 1, values float32 
    56000 Segmenting PflABCD_Cage_imasked_imasked, density threshold 0.007113 
    56001 Showing 65 region surfaces 
    56002 3706 watershed regions, grouped to 65 regions 
    56003 Showing PflABCD_Cage_imasked_imasked.seg - 65 regions, 65 surfaces 
    56004 
    56005 > hide #!24 models
    56006 
    56007 > select #2.14
    56008 
    56009 1 model selected 
    56010 
    56011 > select add #2.15
    56012 
    56013 2 models selected 
    56014 
    56015 > select add #2.19
    56016 
    56017 3 models selected 
    56018 Ungrouped to 14 regions 
    56019 
    56020 > select subtract #2.67
    56021 
    56022 13 models selected 
    56023 
    56024 > select subtract #2.69
    56025 
    56026 12 models selected 
    56027 
    56028 > select subtract #2.74
    56029 
    56030 11 models selected 
    56031 
    56032 > select subtract #2.68
    56033 
    56034 10 models selected 
    56035 
    56036 > select subtract #2.78
    56037 
    56038 9 models selected 
    56039 
    56040 > select subtract #2.79
    56041 
    56042 8 models selected 
    56043 
    56044 > select subtract #2.77
    56045 
    56046 7 models selected 
    56047 
    56048 > select add #2.77
    56049 
    56050 8 models selected 
    56051 
    56052 > select subtract #2.75
    56053 
    56054 7 models selected 
    56055 
    56056 > select subtract #2.77
    56057 
    56058 6 models selected 
    56059 Grouped 6 regions 
    56060 
    56061 > select #2.77
    56062 
    56063 1 model selected 
    56064 Ungrouped to 6 regions 
    56065 
    56066 > select subtract #2.72
    56067 
    56068 5 models selected 
    56069 
    56070 > select subtract #2.71
    56071 
    56072 4 models selected 
    56073 Grouped 4 regions 
    56074 
    56075 > select #2.14
    56076 
    56077 1 model selected 
    56078 
    56079 > select add #2.15
    56080 
    56081 2 models selected 
    56082 
    56083 > select #2.14
    56084 
    56085 1 model selected 
    56086 Ungrouped to 6 regions 
    56087 
    56088 > select subtract #2.66
    56089 
    56090 5 models selected 
    56091 
    56092 > select subtract #2.70
    56093 
    56094 4 models selected 
    56095 
    56096 > select subtract #2.76
    56097 
    56098 3 models selected 
    56099 Ungrouped to 11 regions 
    56100 
    56101 > select subtract #2.82
    56102 
    56103 10 models selected 
    56104 Grouped 10 regions 
    56105 
    56106 > select add #2.82
    56107 
    56108 2 models selected 
    56109 
    56110 > select add #2.66
    56111 
    56112 3 models selected 
    56113 
    56114 > select add #2.70
    56115 
    56116 4 models selected 
    56117 
    56118 > select #2.66
    56119 
    56120 1 model selected 
    56121 
    56122 > select add #2.70
    56123 
    56124 2 models selected 
    56125 
    56126 > select clear
    56127 
    56128 > select #2.70
    56129 
    56130 1 model selected 
    56131 Ungrouped to 8 regions 
    56132 Ungrouped to 0 regions 
    56133 
    56134 > select #2.66
    56135 
    56136 1 model selected 
    56137 
    56138 > select add #2.84
    56139 
    56140 2 models selected 
    56141 
    56142 > select add #2.81
    56143 
    56144 3 models selected 
    56145 
    56146 > select add #2.76
    56147 
    56148 4 models selected 
    56149 Grouped 4 regions 
    56150 
    56151 > hide #!25 models
    56152 
    56153 > select add #2.86
    56154 
    56155 2 models selected 
    56156 
    56157 > select add #2.85
    56158 
    56159 3 models selected 
    56160 
    56161 > select add #2.77
    56162 
    56163 4 models selected 
    56164 
    56165 > select add #2.83
    56166 
    56167 5 models selected 
    56168 
    56169 > select add #2.15
    56170 
    56171 6 models selected 
    56172 
    56173 > select add #2.14
    56174 
    56175 7 models selected 
    56176 Grouped 7 regions 
    56177 Ungrouped to 7 regions 
    56178 
    56179 > select subtract #2.77
    56180 
    56181 6 models selected 
    56182 Grouped 6 regions 
    56183 
    56184 > select clear
    56185 
    56186 > select #2.77
    56187 
    56188 1 model selected 
    56189 
    56190 > select #2.14
    56191 
    56192 1 model selected 
    56193 
    56194 > select #2.77
    56195 
    56196 1 model selected 
    56197 Ungrouped to 10 regions 
    56198 
    56199 > select subtract #2.15
    56200 
    56201 9 models selected 
    56202 Grouped 9 regions 
    56203 
    56204 > select add #2.14
    56205 
    56206 2 models selected 
    56207 Grouped 2 regions 
    56208 
    56209 > select clear
    56210 
    56211 > select #2.14
    56212 
    56213 1 model selected 
    56214 Opened PflABCD_Cage_imasked_imasked_imasked as #26, grid size 200,200,200,
    56215 pixel 2.14, shown at step 1, values float32 
    56216 
    56217 The cached device pixel ratio value was stale on window expose. Please file a
    56218 QTBUG which explains how to reproduce. 
    56219 
    56220 > save /Users/shoichitachiyama/Desktop/tmp/REDO/MotBpg.mrc models #26
    56221 
    56222 Opened PflABCD_Cage_imasked_imasked_imasked as #27, grid size 200,200,200,
    56223 pixel 2.14, shown at step 1, values float32 
    56224 Segmenting PflABCD_Cage_imasked_imasked_imasked, density threshold 0.007113 
    56225 Showing 62 region surfaces 
    56226 3661 watershed regions, grouped to 62 regions 
    56227 Showing PflABCD_Cage_imasked_imasked_imasked.seg - 62 regions, 62 surfaces 
    56228 
    56229 > hide #!26 models
    56230 
    56231 > select #2.16
    56232 
    56233 1 model selected 
    56234 
    56235 > select add #2.35
    56236 
    56237 2 models selected 
    56238 
    56239 > select add #2.57
    56240 
    56241 3 models selected 
    56242 
    56243 > select add #2.19
    56244 
    56245 4 models selected 
    56246 
    56247 > select add #2.23
    56248 
    56249 5 models selected 
    56250 
    56251 > select add #2.25
    56252 
    56253 6 models selected 
    56254 
    56255 > select add #2.24
    56256 
    56257 7 models selected 
    56258 Grouped 7 regions 
    56259 
    56260 > select add #2.21
    56261 
    56262 2 models selected 
    56263 
    56264 > select add #2.30
    56265 
    56266 3 models selected 
    56267 
    56268 > select subtract #2.30
    56269 
    56270 2 models selected 
    56271 
    56272 > select add #2.30
    56273 
    56274 3 models selected 
    56275 
    56276 > select add #2.44
    56277 
    56278 4 models selected 
    56279 
    56280 > select add #2.39
    56281 
    56282 5 models selected 
    56283 Grouped 5 regions 
    56284 
    56285 > hide #!27 models
    56286 
    56287 Opened PflABCD_Cage_imasked_imasked_imasked_imasked as #28, grid size
    56288 200,200,200, pixel 2.14, shown at step 1, values float32 
    56289 
    56290 The cached device pixel ratio value was stale on window expose. Please file a
    56291 QTBUG which explains how to reproduce. 
    56292 
    56293 > save /Users/shoichitachiyama/Desktop/tmp/REDO/PflAFlgY.mrc models #28
    56294 
    56295 Opened PflABCD_Cage_imasked_imasked_imasked_imasked as #29, grid size
    56296 200,200,200, pixel 2.14, shown at step 1, values float32 
    56297 Segmenting PflABCD_Cage_imasked_imasked_imasked_imasked, density threshold
    56298 0.007113 
    56299 Showing 50 region surfaces 
    56300 3293 watershed regions, grouped to 50 regions 
    56301 Showing PflABCD_Cage_imasked_imasked_imasked_imasked.seg - 50 regions, 50
    56302 surfaces 
    56303 
    56304 > hide #!28 models
    56305 
    56306 > select #2.1
    56307 
    56308 1 model selected 
    56309 
    56310 > select add #2.36
    56311 
    56312 2 models selected 
    56313 Grouped 2 regions 
    56314 
    56315 > select #2.18
    56316 
    56317 1 model selected 
    56318 Ungrouped to 3 regions 
    56319 
    56320 > select #2.36
    56321 
    56322 1 model selected 
    56323 Ungrouped to 10 regions 
    56324 
    56325 > select #2.1
    56326 
    56327 1 model selected 
    56328 
    56329 > select add #2.54
    56330 
    56331 2 models selected 
    56332 
    56333 > select add #2.18
    56334 
    56335 3 models selected 
    56336 
    56337 > hide #!29 models
    56338 
    56339 Grouped 3 regions 
    56340 
    56341 > select #2.10
    56342 
    56343 1 model selected 
    56344 
    56345 > select add #2.13
    56346 
    56347 2 models selected 
    56348 
    56349 > select add #2.26
    56350 
    56351 3 models selected 
    56352 
    56353 > select subtract #2.13
    56354 
    56355 2 models selected 
    56356 Grouped 2 regions 
    56357 
    56358 > select #2.33
    56359 
    56360 1 model selected 
    56361 Ungrouped to 3 regions 
    56362 Ungrouped to 7 regions 
    56363 
    56364 > select #2.10
    56365 
    56366 1 model selected 
    56367 
    56368 > select add #2.63
    56369 
    56370 2 models selected 
    56371 
    56372 > select add #2.64
    56373 
    56374 3 models selected 
    56375 Grouped 3 regions 
    56376 
    56377 > select #2.10
    56378 
    56379 1 model selected 
    56380 
    56381 > select #2.65
    56382 
    56383 1 model selected 
    56384 Ungrouped to 0 regions 
    56385 
    56386 > select #2.13
    56387 
    56388 1 model selected 
    56389 Ungrouped to 3 regions 
    56390 Ungrouped to 15 regions 
    56391 Ungrouped to 28 regions 
    56392 
    56393 > select #2.10
    56394 
    56395 1 model selected 
    56396 
    56397 > select add #2.85
    56398 
    56399 2 models selected 
    56400 
    56401 > select add #2.88
    56402 
    56403 3 models selected 
    56404 
    56405 > select add #2.86
    56406 
    56407 4 models selected 
    56408 
    56409 > select add #2.89
    56410 
    56411 5 models selected 
    56412 
    56413 > select add #2.95
    56414 
    56415 6 models selected 
    56416 
    56417 > select add #2.69
    56418 
    56419 7 models selected 
    56420 
    56421 > select add #2.94
    56422 
    56423 8 models selected 
    56424 
    56425 > select add #2.76
    56426 
    56427 9 models selected 
    56428 
    56429 > select add #2.74
    56430 
    56431 10 models selected 
    56432 Grouped 10 regions 
    56433 
    56434 > select #2.66
    56435 
    56436 1 model selected 
    56437 
    56438 > select add #2.10
    56439 
    56440 2 models selected 
    56441 Grouped 2 regions 
    56442 
    56443 > select #2.54
    56444 
    56445 1 model selected 
    56446 Ungrouped to 2 regions 
    56447 Ungrouped to 0 regions 
    56448 
    56449 > select #2.13
    56450 
    56451 1 model selected 
    56452 
    56453 > select add #2.10
    56454 
    56455 2 models selected 
    56456 Grouped 2 regions 
    56457 
    56458 > select add #2.1
    56459 
    56460 2 models selected 
    56461 
    56462 > select clear
    56463 
    56464 > select #2.4
    56465 
    56466 1 model selected 
    56467 
    56468 > select #2.37
    56469 
    56470 1 model selected 
    56471 Ungrouped to 7 regions 
    56472 Ungrouped to 2 regions 
    56473 Ungrouped to 0 regions 
    56474 
    56475 > select #2.72
    56476 
    56477 1 model selected 
    56478 
    56479 > select add #2.4
    56480 
    56481 2 models selected 
    56482 
    56483 > select add #2.27
    56484 
    56485 3 models selected 
    56486 Grouped 3 regions 
    56487 
    56488 > select #2.47
    56489 
    56490 1 model selected 
    56491 
    56492 > select #2.47
    56493 
    56494 1 model selected 
    56495 Ungrouped to 2 regions 
    56496 Ungrouped to 5 regions 
    56497 Ungrouped to 2 regions 
    56498 Ungrouped to 0 regions 
    56499 
    56500 > select #2.73
    56501 
    56502 1 model selected 
    56503 
    56504 > select add #2.74
    56505 
    56506 2 models selected 
    56507 
    56508 > select add #2.4
    56509 
    56510 3 models selected 
    56511 Grouped 3 regions 
    56512 
    56513 > select #2.2
    56514 
    56515 1 model selected 
    56516 Ungrouped to 3 regions 
    56517 Ungrouped to 19 regions 
    56518 Ungrouped to 27 regions 
    56519 Ungrouped to 11 regions 
    56520 Ungrouped to 0 regions 
    56521 Ungrouped to 43 regions 
    56522 
    56523 > select #2.133
    56524 
    56525 1 model selected 
    56526 
    56527 > select add #2.114
    56528 
    56529 2 models selected 
    56530 
    56531 > select add #2.116
    56532 
    56533 3 models selected 
    56534 
    56535 > select add #2.129
    56536 
    56537 4 models selected 
    56538 
    56539 > select add #2.4
    56540 
    56541 5 models selected 
    56542 Grouped 5 regions 
    56543 
    56544 > select add #2.109
    56545 
    56546 2 models selected 
    56547 Grouped 2 regions 
    56548 
    56549 > select #2.160
    56550 
    56551 1 model selected 
    56552 
    56553 > select add #2.125
    56554 
    56555 2 models selected 
    56556 
    56557 > select add #2.3
    56558 
    56559 3 models selected 
    56560 
    56561 > select add #2.126
    56562 
    56563 4 models selected 
    56564 Grouped 4 regions 
    56565 
    56566 > select add #2.132
    56567 
    56568 2 models selected 
    56569 
    56570 > select add #2.159
    56571 
    56572 3 models selected 
    56573 Grouped 3 regions 
    56574 
    56575 > select clear
    56576 
    56577 > select #2.3
    56578 
    56579 1 model selected 
    56580 
    56581 > select add #2.4
    56582 
    56583 2 models selected 
    56584 
    56585 > select add #2.10
    56586 
    56587 3 models selected 
    56588 
    56589 > select add #2.1
    56590 
    56591 4 models selected 
    56592 
    56593 > select clear
    56594 
    56595 > select #2.4
    56596 
    56597 1 model selected 
    56598 Ungrouped to 2 regions 
    56599 Ungrouped to 5 regions 
    56600 
    56601 > select subtract #2.15
    56602 
    56603 4 models selected 
    56604 
    56605 > select #2.9
    56606 
    56607 1 model selected 
    56608 
    56609 > select add #2.14
    56610 
    56611 2 models selected 
    56612 
    56613 > select subtract #2.14
    56614 
    56615 1 model selected 
    56616 
    56617 > select add #2.14
    56618 
    56619 2 models selected 
    56620 Grouped 2 regions 
    56621 
    56622 > select clear
    56623 
    56624 > select #2.15
    56625 
    56626 1 model selected 
    56627 
    56628 > select #2.15
    56629 
    56630 1 model selected 
    56631 Ungrouped to 0 regions 
    56632 
    56633 > select #2.4
    56634 
    56635 1 model selected 
    56636 
    56637 > select add #2.17
    56638 
    56639 2 models selected 
    56640 
    56641 > select add #2.11
    56642 
    56643 3 models selected 
    56644 
    56645 > select add #2.5
    56646 
    56647 4 models selected 
    56648 Grouped 4 regions 
    56649 Showing 152 region surfaces 
    56650 
    56651 > select clear
    56652 
    56653 > select #2.4
    56654 
    56655 1 model selected 
    56656 Ungrouped to 4 regions 
    56657 Ungrouped to 2 regions 
    56658 Ungrouped to 3 regions 
    56659 [Repeated 1 time(s)]Ungrouped to 8 regions 
    56660 Ungrouped to 56 regions 
    56661 Ungrouped to 47 regions 
    56662 Ungrouped to 0 regions 
    56663 
    56664 > select #2.21
    56665 
    56666 1 model selected 
    56667 
    56668 > select add #2.170
    56669 
    56670 2 models selected 
    56671 
    56672 > select add #2.171
    56673 
    56674 3 models selected 
    56675 
    56676 > select add #2.32
    56677 
    56678 4 models selected 
    56679 
    56680 > select add #2.8
    56681 
    56682 5 models selected 
    56683 
    56684 > select add #2.141
    56685 
    56686 6 models selected 
    56687 Grouped 6 regions 
    56688 
    56689 > select add #2.192
    56690 
    56691 2 models selected 
    56692 
    56693 > select add #2.35
    56694 
    56695 3 models selected 
    56696 
    56697 > select add #2.194
    56698 
    56699 4 models selected 
    56700 
    56701 > select add #2.185
    56702 
    56703 5 models selected 
    56704 Grouped 5 regions 
    56705 
    56706 > select add #2.196
    56707 
    56708 2 models selected 
    56709 Grouped 2 regions 
    56710 
    56711 > select add #2.161
    56712 
    56713 2 models selected 
    56714 
    56715 > select add #2.163
    56716 
    56717 3 models selected 
    56718 
    56719 > select add #2.174
    56720 
    56721 4 models selected 
    56722 
    56723 > select add #2.6
    56724 
    56725 5 models selected 
    56726 Grouped 5 regions 
    56727 
    56728 > select add #2.46
    56729 
    56730 2 models selected 
    56731 
    56732 > select add #2.28
    56733 
    56734 3 models selected 
    56735 Grouped 3 regions 
    56736 
    56737 > select add #2.168
    56738 
    56739 2 models selected 
    56740 
    56741 > select add #2.156
    56742 
    56743 3 models selected 
    56744 
    56745 > select add #2.149
    56746 
    56747 4 models selected 
    56748 Grouped 4 regions 
    56749 
    56750 > select add #2.167
    56751 
    56752 2 models selected 
    56753 
    56754 > select add #2.7
    56755 
    56756 3 models selected 
    56757 Grouped 3 regions 
    56758 
    56759 > select #2.176
    56760 
    56761 1 model selected 
    56762 
    56763 > select add #2.119
    56764 
    56765 2 models selected 
    56766 
    56767 > select add #2.118
    56768 
    56769 3 models selected 
    56770 
    56771 > select add #2.143
    56772 
    56773 4 models selected 
    56774 
    56775 > select add #2.144
    56776 
    56777 5 models selected 
    56778 
    56779 > select add #2.22
    56780 
    56781 6 models selected 
    56782 Grouped 6 regions 
    56783 
    56784 > select add #2.175
    56785 
    56786 2 models selected 
    56787 Grouped 2 regions 
    56788 
    56789 > select #2.10
    56790 
    56791 1 model selected 
    56792 Ungrouped to 2 regions 
    56793 [Repeated 1 time(s)]Ungrouped to 10 regions 
    56794 Ungrouped to 3 regions 
    56795 Ungrouped to 6 regions 
    56796 Ungrouped to 13 regions 
    56797 Ungrouped to 43 regions 
    56798 Ungrouped to 63 regions 
    56799 Ungrouped to 0 regions 
    56800 
    56801 > select #2.7
    56802 
    56803 1 model selected 
    56804 
    56805 > select add #2.43
    56806 
    56807 2 models selected 
    56808 Grouped 2 regions 
    56809 
    56810 > select add #2.141
    56811 
    56812 2 models selected 
    56813 Grouped 2 regions 
    56814 
    56815 > select add #2.45
    56816 
    56817 2 models selected 
    56818 
    56819 > select add #2.157
    56820 
    56821 3 models selected 
    56822 Grouped 3 regions 
    56823 
    56824 > select add #2.6
    56825 
    56826 2 models selected 
    56827 Grouped 2 regions 
    56828 
    56829 > select #2.12
    56830 
    56831 1 model selected 
    56832 
    56833 > select add #2.19
    56834 
    56835 2 models selected 
    56836 
    56837 > select add #2.120
    56838 
    56839 3 models selected 
    56840 
    56841 > select add #2.123
    56842 
    56843 4 models selected 
    56844 
    56845 > select add #2.151
    56846 
    56847 5 models selected 
    56848 
    56849 > select add #2.153
    56850 
    56851 6 models selected 
    56852 
    56853 > select add #2.154
    56854 
    56855 7 models selected 
    56856 
    56857 > select subtract #2.154
    56858 
    56859 6 models selected 
    56860 Grouped 6 regions 
    56861 
    56862 > select add #2.152
    56863 
    56864 2 models selected 
    56865 Grouped 2 regions 
    56866 
    56867 > select add #2.49
    56868 
    56869 2 models selected 
    56870 Grouped 2 regions 
    56871 
    56872 > select add #2.6
    56873 
    56874 2 models selected 
    56875 Grouped 2 regions 
    56876 
    56877 > select add #2.102
    56878 
    56879 2 models selected 
    56880 
    56881 > select add #2.100
    56882 
    56883 3 models selected 
    56884 
    56885 > select add #2.101
    56886 
    56887 4 models selected 
    56888 
    56889 > select add #2.103
    56890 
    56891 5 models selected 
    56892 
    56893 > select add #2.63
    56894 
    56895 6 models selected 
    56896 
    56897 > select add #2.98
    56898 
    56899 7 models selected 
    56900 
    56901 > select subtract #2.98
    56902 
    56903 6 models selected 
    56904 
    56905 > select add #2.81
    56906 
    56907 7 models selected 
    56908 
    56909 > select add #2.80
    56910 
    56911 8 models selected 
    56912 
    56913 > select add #2.54
    56914 
    56915 9 models selected 
    56916 
    56917 > select add #2.71
    56918 
    56919 10 models selected 
    56920 
    56921 > select add #2.68
    56922 
    56923 11 models selected 
    56924 
    56925 > select add #2.93
    56926 
    56927 12 models selected 
    56928 
    56929 > select add #2.92
    56930 
    56931 13 models selected 
    56932 
    56933 > select add #2.82
    56934 
    56935 14 models selected 
    56936 
    56937 > select add #2.26
    56938 
    56939 15 models selected 
    56940 
    56941 > select add #2.18
    56942 
    56943 16 models selected 
    56944 
    56945 > select add #2.83
    56946 
    56947 17 models selected 
    56948 
    56949 > select add #2.99
    56950 
    56951 18 models selected 
    56952 
    56953 > select add #2.98
    56954 
    56955 19 models selected 
    56956 
    56957 > select add #2.97
    56958 
    56959 20 models selected 
    56960 
    56961 > select add #2.13
    56962 
    56963 21 models selected 
    56964 
    56965 > select add #2.36
    56966 
    56967 22 models selected 
    56968 
    56969 > select add #2.62
    56970 
    56971 23 models selected 
    56972 
    56973 > select add #2.66
    56974 
    56975 24 models selected 
    56976 
    56977 > select add #2.42
    56978 
    56979 25 models selected 
    56980 
    56981 > select add #2.33
    56982 
    56983 26 models selected 
    56984 Grouped 26 regions 
    56985 
    56986 > select add #2.169
    56987 
    56988 2 models selected 
    56989 
    56990 > select add #2.72
    56991 
    56992 3 models selected 
    56993 
    56994 > select add #2.2
    56995 
    56996 4 models selected 
    56997 
    56998 > select add #2.73
    56999 
    57000 5 models selected 
    57001 
    57002 > select add #2.104
    57003 
    57004 6 models selected 
    57005 
    57006 > select add #2.95
    57007 
    57008 7 models selected 
    57009 
    57010 > select add #2.88
    57011 
    57012 8 models selected 
    57013 
    57014 > select add #2.89
    57015 
    57016 9 models selected 
    57017 
    57018 > select add #2.85
    57019 
    57020 10 models selected 
    57021 
    57022 > select add #2.139
    57023 
    57024 11 models selected 
    57025 
    57026 > select add #2.122
    57027 
    57028 12 models selected 
    57029 
    57030 > select add #2.121
    57031 
    57032 13 models selected 
    57033 
    57034 > select add #2.137
    57035 
    57036 14 models selected 
    57037 
    57038 > select add #2.113
    57039 
    57040 15 models selected 
    57041 
    57042 > select add #2.111
    57043 
    57044 16 models selected 
    57045 
    57046 > select add #2.140
    57047 
    57048 17 models selected 
    57049 
    57050 > select add #2.138
    57051 
    57052 18 models selected 
    57053 
    57054 > select add #2.108
    57055 
    57056 19 models selected 
    57057 
    57058 > select add #2.112
    57059 
    57060 20 models selected 
    57061 
    57062 > select add #2.135
    57063 
    57064 21 models selected 
    57065 
    57066 > select subtract #2.135
    57067 
    57068 20 models selected 
    57069 
    57070 > select add #2.134
    57071 
    57072 21 models selected 
    57073 
    57074 > select add #2.135
    57075 
    57076 22 models selected 
    57077 
    57078 > select add #2.77
    57079 
    57080 23 models selected 
    57081 
    57082 > select add #2.15
    57083 
    57084 24 models selected 
    57085 
    57086 > select add #2.136
    57087 
    57088 25 models selected 
    57089 
    57090 > select add #2.105
    57091 
    57092 26 models selected 
    57093 
    57094 > select add #2.107
    57095 
    57096 27 models selected 
    57097 
    57098 > select add #2.86
    57099 
    57100 28 models selected 
    57101 
    57102 > select add #2.78
    57103 
    57104 29 models selected 
    57105 
    57106 > select add #2.94
    57107 
    57108 30 models selected 
    57109 
    57110 > select add #2.130
    57111 
    57112 31 models selected 
    57113 Grouped 31 regions 
    57114 
    57115 > select #2.142
    57116 
    57117 1 model selected 
    57118 
    57119 > select add #2.2
    57120 
    57121 2 models selected 
    57122 Grouped 2 regions 
    57123 
    57124 > select #2.2
    57125 
    57126 1 model selected 
    57127 
    57128 > select add #2.51
    57129 
    57130 2 models selected 
    57131 
    57132 > select add #2.58
    57133 
    57134 3 models selected 
    57135 
    57136 > select add #2.57
    57137 
    57138 4 models selected 
    57139 
    57140 > select add #2.59
    57141 
    57142 5 models selected 
    57143 
    57144 > select add #2.55
    57145 
    57146 6 models selected 
    57147 Grouped 6 regions 
    57148 
    57149 > select add #2.56
    57150 
    57151 2 models selected 
    57152 Grouped 2 regions 
    57153 
    57154 > select add #2.173
    57155 
    57156 2 models selected 
    57157 
    57158 > select add #2.40
    57159 
    57160 3 models selected 
    57161 
    57162 > select #2.2
    57163 
    57164 1 model selected 
    57165 
    57166 > select clear
    57167 
    57168 > select #2.2
    57169 
    57170 1 model selected 
    57171 
    57172 > select add #2.173
    57173 
    57174 2 models selected 
    57175 
    57176 > select add #2.165
    57177 
    57178 3 models selected 
    57179 Grouped 3 regions 
    57180 
    57181 > select clear
    57182 
    57183 > select #2.2
    57184 
    57185 1 model selected 
    57186 Opened PflABCD_Cage_imasked_imasked_imasked_imasked_imasked as #30, grid size
    57187 200,200,200, pixel 2.14, shown at step 1, values float32 
    57188 
    57189 The cached device pixel ratio value was stale on window expose. Please file a
    57190 QTBUG which explains how to reproduce. 
    57191 
    57192 > save /Users/shoichitachiyama/Desktop/tmp/REDO/Cage-PflAB.mrc models #30
    57193 
    57194 > hide #!2 models
    57195 
    57196 > hide #!30 models
    57197 
    57198 > show #!30 models
    57199 
    57200 > show #!26 models
    57201 
    57202 > show #!22 models
    57203 
    57204 > save /Users/shoichitachiyama/Desktop/tmp/REDO/Resegmentation_no-mask.cxs
    57205 > includeMaps true
    57206 
    57207 > close session
    57208 
    57209 > open /Users/shoichitachiyama/Desktop/tmp/REDO/PflCD.mrc
    57210 
    57211 Opened PflCD.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    57212 0.00703, step 1, values float32 
    57213 
    57214 > open /Users/shoichitachiyama/Desktop/tmp/REDO/Cage-PflAB.mrc
    57215 
    57216 Opened Cage-PflAB.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    57217 0.0202, step 1, values float32 
    57218 
    57219 > volume #2 level 0.00703
    57220 
    57221 > volume gaussian #1 sDev 2.5
    57222 
    57223 Opened PflCD.mrc gaussian as #3, grid size 200,200,200, pixel 2.14, shown at
    57224 step 1, values float32 
    57225 
    57226 > close #3
    57227 
    57228 > volume gaussian #1 sDev 3
    57229 
    57230 Opened PflCD.mrc gaussian as #3, grid size 200,200,200, pixel 2.14, shown at
    57231 step 1, values float32 
    57232 
    57233 > volume gaussian #2 sDev 3
    57234 
    57235 Opened Cage-PflAB.mrc gaussian as #4, grid size 200,200,200, pixel 2.14, shown
    57236 at step 1, values float32 
    57237 
    57238 > volume #3 level 0.00703
    57239 
    57240 > volume #3 level 0.0025
    57241 
    57242 > volume #3 level 0.00136
    57243 
    57244 > volume #4 level 0.00136
    57245 
    57246 > surface dust #3 size 21.4
    57247 
    57248 > surface dust #4 size 21.4
    57249 
    57250 > surface dust #3 size 21.4
    57251 
    57252 > surface dust #4 size 21.4
    57253 
    57254 > hide #!4 models
    57255 
    57256 > ui tool show "Map Eraser"
    57257 
    57258 > volume erase #3 center 20.174,224.54,492.02 radius 236.77
    57259 
    57260 > volume erase #3 center 65.467,171.46,92.433 radius 236.77
    57261 
    57262 > volume erase #3 center 77.209,339.85,3.3018 radius 236.77
    57263 
    57264 > volume erase #3 center 401.68,295.76,-1.6159 radius 236.77
    57265 
    57266 > volume erase #3 center 407.21,44.159,53.128 radius 236.77
    57267 
    57268 > volume erase #3 center 469.71,44.506,126.55 radius 236.77
    57269 
    57270 > volume erase #3 center 515.86,325.83,152.59 radius 236.77
    57271 
    57272 > volume erase #3 center 304.43,421.76,5.3757 radius 236.77
    57273 
    57274 > volume erase #3 center 23.092,-59.062,487.37 radius 236.77
    57275 
    57276 > volume erase #3 center 22.49,472.98,554.6 radius 236.77
    57277 
    57278 > volume erase #3 center 360.47,-87.815,101.02 radius 236.77
    57279 
    57280 > hide #!3 models
    57281 
    57282 > show #!4 models
    57283 
    57284 > volume erase #4 center 82.975,209.79,483.49 radius 214
    57285 
    57286 > volume erase #4 center 36.493,188.42,56.438 radius 214
    57287 
    57288 > volume erase #4 center 64.371,426.19,72.091 radius 214
    57289 
    57290 > volume erase #4 center 544.73,447.17,222.02 radius 214
    57291 
    57292 > volume erase #4 center 587.15,237.1,237.72 radius 214
    57293 
    57294 > volume erase #4 center 538.34,-6.7222,246.41 radius 214
    57295 
    57296 > volume erase #4 center 595.68,4.2899,35.265 radius 214
    57297 
    57298 > volume erase #4 center -32.899,40.612,279.33 radius 214
    57299 
    57300 [Repeated 1 time(s)]
    57301 
    57302 > volume erase #4 center 11.837,480.63,487.85 radius 214
    57303 
    57304 > volume erase #4 center 287.58,47.244,-158.46 radius 214
    57305 
    57306 > surface dust #1 size 50
    57307 
    57308 > surface dust #4 size 50
    57309 
    57310 > volume erase #4 center 517.5,482.91,67.451 radius 214
    57311 
    57312 > close #4
    57313 
    57314 > volume gaussian #2 sDev 3
    57315 
    57316 Opened Cage-PflAB.mrc gaussian as #4, grid size 200,200,200, pixel 2.14, shown
    57317 at step 1, values float32 
    57318 
    57319 > volume #4 level 0.001306
    57320 
    57321 > surface dust #4 size 50
    57322 
    57323 > surface dust #4 size 100
    57324 
    57325 > volume erase #4 center 558.64,398.88,78.048 radius 214
    57326 
    57327 > volume erase #4 center -21.244,220.82,150.15 radius 214
    57328 
    57329 > close #5
    57330 
    57331 > show #!3 models
    57332 
    57333 > surface dust #3 size 100
    57334 
    57335 > color #4 #a9a9a967 models
    57336 
    57337 > color #4 #7b80ffff models
    57338 
    57339 > save /Users/shoichitachiyama/Desktop/tmp/REDO/Docking_models.cxs includeMaps
    57340 > true
    57341 
    57342 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    57343 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    57344 > refinment/For-PflCD/Cage-PflCD.pdb"
    57345 
    57346 Chain information for Cage-PflCD.pdb 
    57347 --- 
    57348 Chain | Description 
    57349 5.1/A 5.4/D 5.7/G 5.10/J 5.13/M 5.16/P 5.19/S 5.22/V | No description available 
    57350 5.2/B 5.5/E 5.8/H 5.11/K 5.14/N 5.17/Q 5.20/T 5.23/W | No description available 
    57351 5.3/C 5.6/F 5.9/I 5.12/L 5.15/O 5.18/R 5.21/U 5.24/X | No description available 
    57352 5.25/Y 5.26/a 5.27/b 5.28/c | No description available 
    57353  
    57354 
    57355 > color #4 #a9a9a967 models
    57356 
    57357 > color #3 #a9a9a967 models
    57358 
    57359 > combine #5
    57360 
    57361 > ui tool show "Fit in Map"
    57362 
    57363 The cached device pixel ratio value was stale on window expose. Please file a
    57364 QTBUG which explains how to reproduce. 
    57365 
    57366 [Repeated 1 time(s)]
    57367 
    57368 > fitmap #6 inMap #4
    57369 
    57370 Fit molecule combination (#6) to map Cage-PflAB.mrc gaussian (#4) using 46256
    57371 atoms 
    57372 average map value = 0.01011, steps = 84 
    57373 shifted from previous position = 5.88 
    57374 rotated from previous position = 2.53 degrees 
    57375 atoms outside contour = 30040, contour level = 0.0013059 
    57376  
    57377 Position of combination (#6) relative to Cage-PflAB.mrc gaussian (#4)
    57378 coordinates: 
    57379 Matrix rotation and translation 
    57380 0.99921948 0.02312516 -0.03202601 0.55153051 
    57381 -0.02374963 0.99953244 -0.01925771 7.88332673 
    57382 0.03156570 0.02000328 0.99930149 -14.43575364 
    57383 Axis 0.44504051 -0.72083986 -0.53134625 
    57384 Axis point 419.20046007 0.00000000 -24.02856866 
    57385 Rotation angle (degrees) 2.52810607 
    57386 Shift along axis 2.23322092 
    57387  
    57388 
    57389 > hide #!5 models
    57390 
    57391 > fitmap #6 inMap #4
    57392 
    57393 Fit molecule combination (#6) to map Cage-PflAB.mrc gaussian (#4) using 46256
    57394 atoms 
    57395 average map value = 0.01012, steps = 40 
    57396 shifted from previous position = 0.0416 
    57397 rotated from previous position = 0.00353 degrees 
    57398 atoms outside contour = 30045, contour level = 0.0013059 
    57399  
    57400 Position of combination (#6) relative to Cage-PflAB.mrc gaussian (#4)
    57401 coordinates: 
    57402 Matrix rotation and translation 
    57403 0.99922138 0.02306617 -0.03200918 0.53302975 
    57404 -0.02369055 0.99953368 -0.01926582 7.83564101 
    57405 0.03154986 0.02000913 0.99930188 -14.42339574 
    57406 Axis 0.44560291 -0.72112366 -0.53048912 
    57407 Axis point 418.97638152 0.00000000 -24.70165846 
    57408 Rotation angle (degrees) 2.52581118 
    57409 Shift along axis 2.23850797 
    57410  
    57411 
    57412 > fitmap #6 inMap #4
    57413 
    57414 Fit molecule combination (#6) to map Cage-PflAB.mrc gaussian (#4) using 46256
    57415 atoms 
    57416 average map value = 0.01011, steps = 40 
    57417 shifted from previous position = 0.0322 
    57418 rotated from previous position = 0.00166 degrees 
    57419 atoms outside contour = 30040, contour level = 0.0013059 
    57420  
    57421 Position of combination (#6) relative to Cage-PflAB.mrc gaussian (#4)
    57422 coordinates: 
    57423 Matrix rotation and translation 
    57424 0.99922152 0.02306628 -0.03200470 0.56113759 
    57425 -0.02368967 0.99953425 -0.01923730 7.84052675 
    57426 0.03154606 0.01998050 0.99930257 -14.42259568 
    57427 Axis 0.44511533 -0.72129020 -0.53067202 
    57428 Axis point 418.84422299 0.00000000 -23.92172561 
    57429 Rotation angle (degrees) 2.52489847 
    57430 Shift along axis 2.24814390 
    57431  
    57432 
    57433 > fitmap #6 inMap #4
    57434 
    57435 Fit molecule combination (#6) to map Cage-PflAB.mrc gaussian (#4) using 46256
    57436 atoms 
    57437 average map value = 0.01012, steps = 44 
    57438 shifted from previous position = 0.0365 
    57439 rotated from previous position = 0.00837 degrees 
    57440 atoms outside contour = 30042, contour level = 0.0013059 
    57441  
    57442 Position of combination (#6) relative to Cage-PflAB.mrc gaussian (#4)
    57443 coordinates: 
    57444 Matrix rotation and translation 
    57445 0.99921675 0.02316253 -0.03208400 0.53098251 
    57446 -0.02378984 0.99953047 -0.01931011 7.87882954 
    57447 0.03162166 0.02005826 0.99929862 -14.45380155 
    57448 Axis 0.44539356 -0.72073324 -0.53119504 
    57449 Axis point 418.98009767 0.00000000 -24.71549644 
    57450 Rotation angle (degrees) 2.53301404 
    57451 Shift along axis 2.23574951 
    57452  
    57453 
    57454 > hide #6 models
    57455 
    57456 > show #6 models
    57457 
    57458 > hide #6 models
    57459 
    57460 > show #!5 models
    57461 
    57462 > hide #5.3 models
    57463 
    57464 > show #5.3 models
    57465 
    57466 > hide #5.28 models
    57467 
    57468 > show #5.28 models
    57469 
    57470 > hide #!5 models
    57471 
    57472 > show #6 models
    57473 
    57474 > open
    57475 > /Users/shoichitachiyama/Desktop/tmp/REDO/fold_2025_07_22_09_45cj_pilmno/fold_2025_07_22_09_45cj_pilmno_model_0.cif
    57476 
    57477 Chain information for fold_2025_07_22_09_45cj_pilmno_model_0.cif #7 
    57478 --- 
    57479 Chain | Description 
    57480 A | . 
    57481 B | . 
    57482 C | . 
    57483  
    57484 
    57485 > select add #7
    57486 
    57487 5637 atoms, 5737 bonds, 683 residues, 1 model selected 
    57488 
    57489 > ui mousemode right "translate selected models"
    57490 
    57491 > view matrix models #7,1,0,0,8.8892,0,1,0,-12.538,0,0,1,224.08
    57492 
    57493 > view matrix models #7,1,0,0,345.54,0,1,0,65.693,0,0,1,212.5
    57494 
    57495 > ui mousemode right "rotate selected models"
    57496 
    57497 > view matrix models
    57498 > #7,-0.84784,0.14233,0.51079,340.7,-0.46043,-0.6754,-0.57606,46.043,0.263,-0.72358,0.63817,205.61
    57499 
    57500 > ui mousemode right "translate selected models"
    57501 
    57502 > view matrix models
    57503 > #7,-0.84784,0.14233,0.51079,351.79,-0.46043,-0.6754,-0.57606,161.29,0.263,-0.72358,0.63817,160.26
    57504 
    57505 > view matrix models
    57506 > #7,-0.84784,0.14233,0.51079,347.8,-0.46043,-0.6754,-0.57606,163.57,0.263,-0.72358,0.63817,160.49
    57507 
    57508 > ui mousemode right "rotate selected models"
    57509 
    57510 > view matrix models
    57511 > #7,-0.77936,-0.051184,0.62449,346.55,-0.49138,-0.56848,-0.65983,164.23,0.38878,-0.8211,0.4179,159.45
    57512 
    57513 > ui mousemode right "translate selected models"
    57514 
    57515 > view matrix models
    57516 > #7,-0.77936,-0.051184,0.62449,327.63,-0.49138,-0.56848,-0.65983,175.12,0.38878,-0.8211,0.4179,155.63
    57517 
    57518 > view matrix models
    57519 > #7,-0.77936,-0.051184,0.62449,327.88,-0.49138,-0.56848,-0.65983,173.06,0.38878,-0.8211,0.4179,150.22
    57520 
    57521 > view matrix models
    57522 > #7,-0.77936,-0.051184,0.62449,334.14,-0.49138,-0.56848,-0.65983,174.64,0.38878,-0.8211,0.4179,151.85
    57523 
    57524 > view matrix models
    57525 > #7,-0.77936,-0.051184,0.62449,333.76,-0.49138,-0.56848,-0.65983,196.03,0.38878,-0.8211,0.4179,132.67
    57526 
    57527 > view matrix models
    57528 > #7,-0.77936,-0.051184,0.62449,326.38,-0.49138,-0.56848,-0.65983,101.33,0.38878,-0.8211,0.4179,154.88
    57529 
    57530 > ui mousemode right "rotate selected models"
    57531 
    57532 > view matrix models
    57533 > #7,-0.77421,-0.05604,0.63044,326.37,-0.45181,-0.64862,-0.6125,100.86,0.44324,-0.75904,0.47685,155.87
    57534 
    57535 > ui mousemode right "translate selected models"
    57536 
    57537 > view matrix models
    57538 > #7,-0.77421,-0.05604,0.63044,325.89,-0.45181,-0.64862,-0.6125,94.416,0.44324,-0.75904,0.47685,158.06
    57539 
    57540 > ui mousemode right "rotate selected models"
    57541 
    57542 > view matrix models
    57543 > #7,-0.84318,-0.13151,0.5213,324.57,-0.32745,-0.64341,-0.69195,94.756,0.4264,-0.75414,0.49945,158.1
    57544 
    57545 > hide #7 models
    57546 
    57547 > select subtract #7
    57548 
    57549 Nothing selected 
    57550 
    57551 > show #7 models
    57552 
    57553 > select add #7
    57554 
    57555 5637 atoms, 5737 bonds, 683 residues, 1 model selected 
    57556 
    57557 > view matrix models
    57558 > #7,-0.85479,-0.11718,0.50557,324.61,-0.41822,-0.42128,-0.80475,96.198,0.30729,-0.89933,0.3111,155.68
    57559 
    57560 > ui mousemode right "translate selected models"
    57561 
    57562 > view matrix models
    57563 > #7,-0.85479,-0.11718,0.50557,326.23,-0.41822,-0.42128,-0.80475,116.83,0.30729,-0.89933,0.3111,151.17
    57564 
    57565 > save /Users/shoichitachiyama/Desktop/tmp/REDO/Docking_models.cxs includeMaps
    57566 > true
    57567 
    57568 ——— End of log from Tue Jul 22 22:37:33 2025 ———
    57569 
    57570 opened ChimeraX session 
    57571 
    57572 > hide #!3 models
    57573 
    57574 > hide #!4 models
    57575 
    57576 > hide #5.2 models
    57577 
    57578 > show #5.2 models
    57579 
    57580 > hide #6 models
    57581 
    57582 > hide #5.1 models
    57583 
    57584 > show #5.1 models
    57585 
    57586 > hide #5.3 models
    57587 
    57588 > show #5.3 models
    57589 
    57590 > hide #5.4 models
    57591 
    57592 > show #5.4 models
    57593 
    57594 > hide #5.5 models
    57595 
    57596 > show #5.5 models
    57597 
    57598 > hide #5.28 models
    57599 
    57600 > show #5.28 models
    57601 
    57602 > hide #5.27 models
    57603 
    57604 > show #5.27 models
    57605 
    57606 > hide #5.25 models
    57607 
    57608 > show #5.25 models
    57609 
    57610 > hide #5.24 models
    57611 
    57612 > show #5.24 models
    57613 
    57614 > hide #5.23 models
    57615 
    57616 > show #5.23 models
    57617 
    57618 > hide #5.23 models
    57619 
    57620 > show #5.23 models
    57621 
    57622 > hide #5.24 models
    57623 
    57624 > show #5.24 models
    57625 
    57626 > hide #5.24 models
    57627 
    57628 > hide #5.25 models
    57629 
    57630 > hide #5.23 models
    57631 
    57632 > show #5.23 models
    57633 
    57634 > hide #5.23 models
    57635 
    57636 > show #5.23 models
    57637 
    57638 > select add #5.23
    57639 
    57640 7095 atoms, 7225 bonds, 858 residues, 2 models selected 
    57641 Alignment identifier is 1 
    57642 Alignment identifier is 7/A 
    57643 Alignment identifier is 7/C 
    57644 
    57645 > select subtract #7
    57646 
    57647 1458 atoms, 1488 bonds, 175 residues, 1 model selected 
    57648 
    57649 > select add #7
    57650 
    57651 7095 atoms, 7225 bonds, 858 residues, 2 models selected 
    57652 Alignment identifier is 2 
    57653 Alignment identifier is 7/A 
    57654 Alignment identifier is 7/C 
    57655 
    57656 > select #7/A:1-2
    57657 
    57658 16 atoms, 15 bonds, 2 residues, 1 model selected 
    57659 
    57660 > select #7/A
    57661 
    57662 2637 atoms, 2686 bonds, 319 residues, 1 model selected 
    57663 
    57664 > select #7/C:1-2
    57665 
    57666 12 atoms, 11 bonds, 2 residues, 1 model selected 
    57667 
    57668 > select #7/C
    57669 
    57670 1542 atoms, 1563 bonds, 189 residues, 1 model selected 
    57671 
    57672 > split #7
    57673 
    57674 Split fold_2025_07_22_09_45cj_pilmno_model_0.cif (#7) into 3 models 
    57675 Chain information for fold_2025_07_22_09_45cj_pilmno_model_0.cif A #7.1 
    57676 --- 
    57677 Chain | Description 
    57678 A | No description available 
    57679  
    57680 Chain information for fold_2025_07_22_09_45cj_pilmno_model_0.cif B #7.2 
    57681 --- 
    57682 Chain | Description 
    57683 B | No description available 
    57684  
    57685 Chain information for fold_2025_07_22_09_45cj_pilmno_model_0.cif C #7.3 
    57686 --- 
    57687 Chain | Description 
    57688 C | No description available 
    57689  
    57690 
    57691 > hide #7.1 models
    57692 
    57693 > combine #7.2,7.3
    57694 
    57695 No structures specified 
    57696 
    57697 > select add #7.2
    57698 
    57699 1458 atoms, 1488 bonds, 175 residues, 1 model selected 
    57700 
    57701 > select add #7.3
    57702 
    57703 3000 atoms, 3051 bonds, 364 residues, 2 models selected 
    57704 
    57705 > save /Users/shoichi/Desktop/PilNO_noPilM_predicted.pdb selectedOnly true
    57706 
    57707 > select clear
    57708 
    57709 > open /Users/shoichi/Desktop/PilNO_noPilM_predicted.pdb
    57710 
    57711 Summary of feedback from opening
    57712 /Users/shoichi/Desktop/PilNO_noPilM_predicted.pdb 
    57713 --- 
    57714 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    57715 Start residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1
    57716 42 
    57717 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    57718 8 
    57719 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    57720 1 7 
    57721 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    57722 1 3 
    57723 21 messages similar to the above omitted 
    57724  
    57725 Chain information for PilNO_noPilM_predicted.pdb 
    57726 --- 
    57727 Chain | Description 
    57728 8.1/B | No description available 
    57729 8.2/C | No description available 
    57730  
    57731 
    57732 > combine #8
    57733 
    57734 > hide #!8 models
    57735 
    57736 > show #6 models
    57737 
    57738 > hide #6 models
    57739 
    57740 > show #6 models
    57741 
    57742 > show #!4 models
    57743 
    57744 > hide #6 models
    57745 
    57746 > show #6 models
    57747 
    57748 > hide #6 models
    57749 
    57750 > show #6 models
    57751 
    57752 > hide #6 models
    57753 
    57754 > show #6 models
    57755 
    57756 > hide #!5 models
    57757 
    57758 > split #6
    57759 
    57760 Split combination (#6) into 28 models 
    57761 Chain information for combination A #6.1 
    57762 --- 
    57763 Chain | Description 
    57764 A | No description available 
    57765  
    57766 Chain information for combination B #6.2 
    57767 --- 
    57768 Chain | Description 
    57769 B | No description available 
    57770  
    57771 Chain information for combination C #6.3 
    57772 --- 
    57773 Chain | Description 
    57774 C | No description available 
    57775  
    57776 Chain information for combination D #6.4 
    57777 --- 
    57778 Chain | Description 
    57779 D | No description available 
    57780  
    57781 Chain information for combination E #6.5 
    57782 --- 
    57783 Chain | Description 
    57784 E | No description available 
    57785  
    57786 Chain information for combination F #6.6 
    57787 --- 
    57788 Chain | Description 
    57789 F | No description available 
    57790  
    57791 Chain information for combination G #6.7 
    57792 --- 
    57793 Chain | Description 
    57794 G | No description available 
    57795  
    57796 Chain information for combination H #6.8 
    57797 --- 
    57798 Chain | Description 
    57799 H | No description available 
    57800  
    57801 Chain information for combination I #6.9 
    57802 --- 
    57803 Chain | Description 
    57804 I | No description available 
    57805  
    57806 Chain information for combination J #6.10 
    57807 --- 
    57808 Chain | Description 
    57809 J | No description available 
    57810  
    57811 Chain information for combination K #6.11 
    57812 --- 
    57813 Chain | Description 
    57814 K | No description available 
    57815  
    57816 Chain information for combination L #6.12 
    57817 --- 
    57818 Chain | Description 
    57819 L | No description available 
    57820  
    57821 Chain information for combination M #6.13 
    57822 --- 
    57823 Chain | Description 
    57824 M | No description available 
    57825  
    57826 Chain information for combination N #6.14 
    57827 --- 
    57828 Chain | Description 
    57829 N | No description available 
    57830  
    57831 Chain information for combination O #6.15 
    57832 --- 
    57833 Chain | Description 
    57834 O | No description available 
    57835  
    57836 Chain information for combination P #6.16 
    57837 --- 
    57838 Chain | Description 
    57839 P | No description available 
    57840  
    57841 Chain information for combination Q #6.17 
    57842 --- 
    57843 Chain | Description 
    57844 Q | No description available 
    57845  
    57846 Chain information for combination R #6.18 
    57847 --- 
    57848 Chain | Description 
    57849 R | No description available 
    57850  
    57851 Chain information for combination S #6.19 
    57852 --- 
    57853 Chain | Description 
    57854 S | No description available 
    57855  
    57856 Chain information for combination T #6.20 
    57857 --- 
    57858 Chain | Description 
    57859 T | No description available 
    57860  
    57861 Chain information for combination U #6.21 
    57862 --- 
    57863 Chain | Description 
    57864 U | No description available 
    57865  
    57866 Chain information for combination V #6.22 
    57867 --- 
    57868 Chain | Description 
    57869 V | No description available 
    57870  
    57871 Chain information for combination W #6.23 
    57872 --- 
    57873 Chain | Description 
    57874 W | No description available 
    57875  
    57876 Chain information for combination X #6.24 
    57877 --- 
    57878 Chain | Description 
    57879 X | No description available 
    57880  
    57881 Chain information for combination Y #6.25 
    57882 --- 
    57883 Chain | Description 
    57884 Y | No description available 
    57885  
    57886 Chain information for combination a #6.26 
    57887 --- 
    57888 Chain | Description 
    57889 a | No description available 
    57890  
    57891 Chain information for combination b #6.27 
    57892 --- 
    57893 Chain | Description 
    57894 b | No description available 
    57895  
    57896 Chain information for combination c #6.28 
    57897 --- 
    57898 Chain | Description 
    57899 c | No description available 
    57900  
    57901 
    57902 > hide #!4 models
    57903 
    57904 > show #!4 models
    57905 
    57906 > hide #!6 models
    57907 
    57908 > hide #!7 models
    57909 
    57910 > show #!6 models
    57911 
    57912 > select add #6.8
    57913 
    57914 1458 atoms, 1488 bonds, 175 residues, 1 model selected 
    57915 
    57916 > select subtract #6.8
    57917 
    57918 Nothing selected 
    57919 
    57920 > hide #!4 models
    57921 
    57922 Drag select of 33 residues 
    57923 
    57924 > select add #6.10
    57925 
    57926 1713 atoms, 1564 bonds, 211 residues, 3 models selected 
    57927 
    57928 > select add #6.11
    57929 
    57930 3083 atoms, 3052 bonds, 375 residues, 3 models selected 
    57931 
    57932 > select add #6.12
    57933 
    57934 4355 atoms, 4440 bonds, 526 residues, 3 models selected 
    57935 
    57936 > save /Users/shoichi/Desktop/One_unit_JBM_PilNO_PflD.pdb selectedOnly true
    57937 
    57938 > hide #!6 models
    57939 
    57940 > select clear
    57941 
    57942 > open /Users/shoichi/Desktop/One_unit_JBM_PilNO_PflD.pdb
    57943 
    57944 Summary of feedback from opening
    57945 /Users/shoichi/Desktop/One_unit_JBM_PilNO_PflD.pdb 
    57946 --- 
    57947 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    57948 Start residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1
    57949 42 
    57950 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    57951 8 
    57952 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    57953 1 7 
    57954 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    57955 1 3 
    57956 34 messages similar to the above omitted 
    57957  
    57958 Chain information for One_unit_JBM_PilNO_PflD.pdb 
    57959 --- 
    57960 Chain | Description 
    57961 10.1/J | No description available 
    57962 10.2/K | No description available 
    57963 10.3/L | No description available 
    57964  
    57965 
    57966 > combine #10
    57967 
    57968 > matchmaker #9 to #11
    57969 
    57970 Parameters 
    57971 --- 
    57972 Chain pairing | bb 
    57973 Alignment algorithm | Needleman-Wunsch 
    57974 Similarity matrix | BLOSUM-62 
    57975 SS fraction | 0.3 
    57976 Gap open (HH/SS/other) | 18/18/6 
    57977 Gap extend | 1 
    57978 SS matrix |  |  | H | S | O 
    57979 ---|---|---|--- 
    57980 H | 6 | -9 | -6 
    57981 S |  | 6 | -6 
    57982 O |  |  | 4 
    57983 Iteration cutoff | 2 
    57984  
    57985 Matchmaker combination, chain J (#11) with combination, chain C (#9), sequence
    57986 alignment score = 960 
    57987 RMSD between 153 pruned atom pairs is 0.777 angstroms; (across all 189 pairs:
    57988 12.653) 
    57989  
    57990 
    57991 > show #!7 models
    57992 
    57993 > hide #!7 models
    57994 
    57995 > show #!7 models
    57996 
    57997 > show #7.1 models
    57998 
    57999 > combine #7
    58000 
    58001 > matchmaker #12 to #9
    58002 
    58003 Parameters 
    58004 --- 
    58005 Chain pairing | bb 
    58006 Alignment algorithm | Needleman-Wunsch 
    58007 Similarity matrix | BLOSUM-62 
    58008 SS fraction | 0.3 
    58009 Gap open (HH/SS/other) | 18/18/6 
    58010 Gap extend | 1 
    58011 SS matrix |  |  | H | S | O 
    58012 ---|---|---|--- 
    58013 H | 6 | -9 | -6 
    58014 S |  | 6 | -6 
    58015 O |  |  | 4 
    58016 Iteration cutoff | 2 
    58017  
    58018 Matchmaker combination, chain C (#9) with combination, chain C (#12), sequence
    58019 alignment score = 978 
    58020 RMSD between 189 pruned atom pairs is 0.000 angstroms; (across all 189 pairs:
    58021 0.000) 
    58022  
    58023 
    58024 > hide #11 models
    58025 
    58026 > show #11 models
    58027 
    58028 > hide #11 models
    58029 
    58030 > hide #!10 models
    58031 
    58032 > hide #9 models
    58033 
    58034 > hide #!7 models
    58035 
    58036 > show #!5 models
    58037 
    58038 > hide #!5 models
    58039 
    58040 > show #!4 models
    58041 
    58042 > combine #12
    58043 
    58044 > ui tool show "Fit in Map"
    58045 
    58046 The cached device pixel ratio value was stale on window expose. Please file a
    58047 QTBUG which explains how to reproduce. 
    58048 
    58049 [Repeated 1 time(s)]
    58050 
    58051 > fitmap #13 inMap #4
    58052 
    58053 Fit molecule copy of combination (#13) to map Cage-PflAB.mrc gaussian (#4)
    58054 using 5637 atoms 
    58055 average map value = 0.01109, steps = 636 
    58056 shifted from previous position = 24.6 
    58057 rotated from previous position = 33.3 degrees 
    58058 atoms outside contour = 1405, contour level = 0.0013059 
    58059  
    58060 Position of copy of combination (#13) relative to Cage-PflAB.mrc gaussian (#4)
    58061 coordinates: 
    58062 Matrix rotation and translation 
    58063 -0.88826804 -0.00944555 0.45922835 323.13195928 
    58064 -0.40374456 -0.46067511 -0.79042316 119.91203454 
    58065 0.21902105 -0.88751857 0.40538939 156.26725860 
    58066 Axis -0.20579620 0.50912545 -0.83572675 
    58067 Axis point 155.86657636 86.42998297 0.00000000 
    58068 Rotation angle (degrees) 166.35520893 
    58069 Shift along axis -136.04578879 
    58070  
    58071 
    58072 > hide #12 models
    58073 
    58074 > show #12 models
    58075 
    58076 > hide #12 models
    58077 
    58078 > select add #13
    58079 
    58080 5637 atoms, 5737 bonds, 683 residues, 1 model selected 
    58081 
    58082 > ui mousemode right "rotate selected models"
    58083 
    58084 > view matrix models
    58085 > #13,-0.50943,0.1189,0.85226,316.16,-0.78994,-0.45743,-0.40836,97.933,0.3413,-0.88126,0.32695,158.84
    58086 
    58087 > ui mousemode right "translate selected models"
    58088 
    58089 > view matrix models
    58090 > #13,-0.50943,0.1189,0.85226,317.58,-0.78994,-0.45743,-0.40836,114.97,0.3413,-0.88126,0.32695,156.12
    58091 
    58092 > ui mousemode right "rotate selected models"
    58093 
    58094 > view matrix models
    58095 > #13,-0.50657,0.12206,0.85352,317.62,-0.80047,-0.43441,-0.41296,115.14,0.32037,-0.89241,0.31776,155.9
    58096 
    58097 > ui mousemode right "translate selected models"
    58098 
    58099 > view matrix models
    58100 > #13,-0.50657,0.12206,0.85352,317.73,-0.80047,-0.43441,-0.41296,116.34,0.32037,-0.89241,0.31776,155.65
    58101 
    58102 > hide #!4 models
    58103 
    58104 > select clear
    58105 
    58106 > show #!10 models
    58107 
    58108 > close #11-13
    58109 
    58110 > hide #!10 models
    58111 
    58112 > show #!10 models
    58113 
    58114 > show #9 models
    58115 
    58116 > hide #9 models
    58117 
    58118 > show #9 models
    58119 
    58120 > show #!6 models
    58121 
    58122 > hide #!6 models
    58123 
    58124 > show #!7 models
    58125 
    58126 > hide #!7 models
    58127 
    58128 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    58129 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    58130 > refinment/PflCD_Docking_model_Fig3/REDO/Models/fold_2025_07_22_09_45cj_pilm_pilnnterm/fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif"
    58131 
    58132 Chain information for fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif #11 
    58133 --- 
    58134 Chain | Description 
    58135 A | . 
    58136 B | . 
    58137  
    58138 
    58139 > select add #11
    58140 
    58141 2872 atoms, 2930 bonds, 346 residues, 1 model selected 
    58142 
    58143 > view matrix models #11,1,0,0,76.462,0,1,0,-68.169,0,0,1,159.41
    58144 
    58145 > view matrix models #11,1,0,0,307.15,0,1,0,91.026,0,0,1,102.81
    58146 
    58147 > hide #!10 models
    58148 
    58149 > show #!10 models
    58150 
    58151 > hide #10.1 models
    58152 
    58153 > show #10.1 models
    58154 
    58155 > hide #10.1 models
    58156 
    58157 > hide #10.3 models
    58158 
    58159 > matchmaker #11 to #10.2
    58160 
    58161 Parameters 
    58162 --- 
    58163 Chain pairing | bb 
    58164 Alignment algorithm | Needleman-Wunsch 
    58165 Similarity matrix | BLOSUM-62 
    58166 SS fraction | 0.3 
    58167 Gap open (HH/SS/other) | 18/18/6 
    58168 Gap extend | 1 
    58169 SS matrix |  |  | H | S | O 
    58170 ---|---|---|--- 
    58171 H | 6 | -9 | -6 
    58172 S |  | 6 | -6 
    58173 O |  |  | 4 
    58174 Iteration cutoff | 2 
    58175  
    58176 Matchmaker One_unit_JBM_PilNO_PflD.pdb, chain K (#10.2) with
    58177 fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif, chain B (#11), sequence
    58178 alignment score = 124 
    58179 RMSD between 7 pruned atom pairs is 1.601 angstroms; (across all 27 pairs:
    58180 7.178) 
    58181  
    58182 
    58183 > hide #9 models
    58184 
    58185 > split #11
    58186 
    58187 Split fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif (#11) into 2 models 
    58188 Chain information for fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif A
    58189 #11.1 
    58190 --- 
    58191 Chain | Description 
    58192 A | No description available 
    58193  
    58194 Chain information for fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif B
    58195 #11.2 
    58196 --- 
    58197 Chain | Description 
    58198 B | No description available 
    58199  
    58200 
    58201 > hide #11.1 models
    58202 
    58203 > show #11.1 models
    58204 
    58205 > hide #11.1 models
    58206 
    58207 > matchmaker #11.2 to #10.2
    58208 
    58209 Parameters 
    58210 --- 
    58211 Chain pairing | bb 
    58212 Alignment algorithm | Needleman-Wunsch 
    58213 Similarity matrix | BLOSUM-62 
    58214 SS fraction | 0.3 
    58215 Gap open (HH/SS/other) | 18/18/6 
    58216 Gap extend | 1 
    58217 SS matrix |  |  | H | S | O 
    58218 ---|---|---|--- 
    58219 H | 6 | -9 | -6 
    58220 S |  | 6 | -6 
    58221 O |  |  | 4 
    58222 Iteration cutoff | 2 
    58223  
    58224 Matchmaker One_unit_JBM_PilNO_PflD.pdb, chain K (#10.2) with
    58225 fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif B, chain B (#11.2),
    58226 sequence alignment score = 124 
    58227 RMSD between 7 pruned atom pairs is 1.601 angstroms; (across all 27 pairs:
    58228 7.178) 
    58229  
    58230 
    58231 > matchmaker #11.2 to #10.2
    58232 
    58233 Parameters 
    58234 --- 
    58235 Chain pairing | bb 
    58236 Alignment algorithm | Needleman-Wunsch 
    58237 Similarity matrix | BLOSUM-62 
    58238 SS fraction | 0.3 
    58239 Gap open (HH/SS/other) | 18/18/6 
    58240 Gap extend | 1 
    58241 SS matrix |  |  | H | S | O 
    58242 ---|---|---|--- 
    58243 H | 6 | -9 | -6 
    58244 S |  | 6 | -6 
    58245 O |  |  | 4 
    58246 Iteration cutoff | 2 
    58247  
    58248 Matchmaker One_unit_JBM_PilNO_PflD.pdb, chain K (#10.2) with
    58249 fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif B, chain B (#11.2),
    58250 sequence alignment score = 124 
    58251 RMSD between 7 pruned atom pairs is 1.601 angstroms; (across all 27 pairs:
    58252 7.178) 
    58253  
    58254 
    58255 > show #11.1 models
    58256 
    58257 > hide #11.1 models
    58258 
    58259 > show #11.1 models
    58260 
    58261 > hide #11.1 models
    58262 
    58263 > show #11.1 models
    58264 
    58265 > hide #11.1 models
    58266 
    58267 > show #11.1 models
    58268 
    58269 > hide #11.2 models
    58270 
    58271 > show #10.3 models
    58272 
    58273 > show #10.1 models
    58274 
    58275 > select add #11.1
    58276 
    58277 2637 atoms, 2686 bonds, 319 residues, 1 model selected 
    58278 
    58279 > select add #10.3
    58280 
    58281 3992 atoms, 4074 bonds, 481 residues, 2 models selected 
    58282 
    58283 > select add #10.2
    58284 
    58285 5450 atoms, 5562 bonds, 656 residues, 3 models selected 
    58286 
    58287 > select add #10.1
    58288 
    58289 6992 atoms, 7126 bonds, 845 residues, 4 models selected 
    58290 
    58291 > save /Users/shoichi/Desktop/One_unit_JBM_PilNO_PflDwithPilM.pdb selectedOnly
    58292 > true
    58293 
    58294 > select clear
    58295 
    58296 > open /Users/shoichi/Desktop/One_unit_JBM_PilNO_PflDwithPilM.pdb
    58297 
    58298 Summary of feedback from opening
    58299 /Users/shoichi/Desktop/One_unit_JBM_PilNO_PflDwithPilM.pdb 
    58300 --- 
    58301 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    58302 Start residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1
    58303 42 
    58304 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    58305 8 
    58306 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    58307 1 7 
    58308 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    58309 1 3 
    58310 35 messages similar to the above omitted 
    58311 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    58312 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    58313 8 
    58314 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    58315 1 7 
    58316 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    58317 1 3 
    58318 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    58319 1 3 
    58320 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    58321 1 6 
    58322 6 messages similar to the above omitted 
    58323  
    58324 Chain information for One_unit_JBM_PilNO_PflDwithPilM.pdb 
    58325 --- 
    58326 Chain | Description 
    58327 12.4/A | No description available 
    58328 12.1/J | No description available 
    58329 12.2/K | No description available 
    58330 12.3/L | No description available 
    58331  
    58332 
    58333 > hide #!10 models
    58334 
    58335 > hide #!11 models
    58336 
    58337 > combine #12
    58338 
    58339 > hide #!12 models
    58340 
    58341 > show #!5 models
    58342 
    58343 > hide #!5 models
    58344 
    58345 > show #!5 models
    58346 
    58347 > hide #!5 models
    58348 
    58349 > show #!6 models
    58350 
    58351 > show #!4 models
    58352 
    58353 > select add #13
    58354 
    58355 6992 atoms, 7126 bonds, 845 residues, 1 model selected 
    58356 
    58357 > ui mousemode right "rotate selected models"
    58358 
    58359 > view matrix models
    58360 > #13,0.99951,-0.00089194,-0.031358,5.7809,-0.0035041,0.99017,-0.13986,26.842,0.031174,0.1399,0.98968,-23.458
    58361 
    58362 > ui mousemode right "translate selected models"
    58363 
    58364 > view matrix models
    58365 > #13,0.99951,-0.00089194,-0.031358,8.4964,-0.0035041,0.99017,-0.13986,39.04,0.031174,0.1399,0.98968,-24.631
    58366 
    58367 > ui mousemode right "rotate selected models"
    58368 
    58369 > view matrix models
    58370 > #13,0.99899,-0.0026302,-0.044765,11.214,-0.0063545,0.9799,-0.19939,51.565,0.044389,0.19947,0.9789,-33.477
    58371 
    58372 > ui mousemode right "translate selected models"
    58373 
    58374 > view matrix models
    58375 > #13,0.99899,-0.0026302,-0.044765,12.596,-0.0063545,0.9799,-0.19939,57.776,0.044389,0.19947,0.9789,-34.052
    58376 
    58377 > select clear
    58378 
    58379 > hide #!4 models
    58380 
    58381 > show #!10 models
    58382 
    58383 > hide #!10 models
    58384 
    58385 Drag select of 19 residues 
    58386 Drag select of 181 residues 
    58387 Drag select of 22 residues 
    58388 
    58389 > select add #6.22
    58390 
    58391 3293 atoms, 1564 bonds, 404 residues, 4 models selected 
    58392 
    58393 > select add #6.23
    58394 
    58395 4701 atoms, 3052 bonds, 573 residues, 4 models selected 
    58396 
    58397 > select add #6.24
    58398 
    58399 5387 atoms, 4440 bonds, 656 residues, 4 models selected 
    58400 
    58401 > select add #6.28
    58402 
    58403 7209 atoms, 7354 bonds, 882 residues, 4 models selected 
    58404 
    58405 > save /Users/shoichi/Desktop/2nd_unit_PilNO_PflDC_JMB.pdb selectedOnly true
    58406 
    58407 > select clear
    58408 
    58409 > open /Users/shoichi/Desktop/2nd_unit_PilNO_PflDC_JMB.pdb
    58410 
    58411 Summary of feedback from opening
    58412 /Users/shoichi/Desktop/2nd_unit_PilNO_PflDC_JMB.pdb 
    58413 --- 
    58414 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    58415 Start residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1
    58416 42 
    58417 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    58418 8 
    58419 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    58420 1 7 
    58421 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    58422 1 3 
    58423 47 messages similar to the above omitted 
    58424  
    58425 Chain information for 2nd_unit_PilNO_PflDC_JMB.pdb 
    58426 --- 
    58427 Chain | Description 
    58428 14.1/V | No description available 
    58429 14.2/W | No description available 
    58430 14.3/X | No description available 
    58431 14.4/c | No description available 
    58432  
    58433 
    58434 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    58435 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    58436 > refinment/PflCD_Docking_model_Fig3/REDO/Models/fold_2025_07_22_09_45cj_pilm_pilnnterm/fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif"
    58437 
    58438 Chain information for fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif #15 
    58439 --- 
    58440 Chain | Description 
    58441 A | . 
    58442 B | . 
    58443  
    58444 
    58445 > select add #15
    58446 
    58447 2872 atoms, 2930 bonds, 346 residues, 1 model selected 
    58448 
    58449 > view matrix models #15,1,0,0,29.872,0,1,0,201.61,0,0,1,38.462
    58450 
    58451 > view matrix models #15,1,0,0,167.09,0,1,0,209.12,0,0,1,202.88
    58452 
    58453 > view matrix models #15,1,0,0,343.71,0,1,0,275.21,0,0,1,157.7
    58454 
    58455 > view matrix models #15,1,0,0,364.43,0,1,0,188.41,0,0,1,97.033
    58456 
    58457 > hide #!6 models
    58458 
    58459 > hide #14.3 models
    58460 
    58461 > hide #14.4 models
    58462 
    58463 > hide #14.2 models
    58464 
    58465 > show #14.2 models
    58466 
    58467 > matchmaker #15 to #14.2
    58468 
    58469 Parameters 
    58470 --- 
    58471 Chain pairing | bb 
    58472 Alignment algorithm | Needleman-Wunsch 
    58473 Similarity matrix | BLOSUM-62 
    58474 SS fraction | 0.3 
    58475 Gap open (HH/SS/other) | 18/18/6 
    58476 Gap extend | 1 
    58477 SS matrix |  |  | H | S | O 
    58478 ---|---|---|--- 
    58479 H | 6 | -9 | -6 
    58480 S |  | 6 | -6 
    58481 O |  |  | 4 
    58482 Iteration cutoff | 2 
    58483  
    58484 Matchmaker 2nd_unit_PilNO_PflDC_JMB.pdb, chain W (#14.2) with
    58485 fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif, chain B (#15), sequence
    58486 alignment score = 124 
    58487 RMSD between 7 pruned atom pairs is 1.601 angstroms; (across all 27 pairs:
    58488 7.178) 
    58489  
    58490 
    58491 > show #!4 models
    58492 
    58493 > show #14.3 models
    58494 
    58495 > show #14.4 models
    58496 
    58497 > show #!3 models
    58498 
    58499 > select subtract #15
    58500 
    58501 Nothing selected 
    58502 
    58503 > hide #!4 models
    58504 
    58505 > hide #!3 models
    58506 
    58507 > split #15
    58508 
    58509 Split fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif (#15) into 2 models 
    58510 Chain information for fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif A
    58511 #15.1 
    58512 --- 
    58513 Chain | Description 
    58514 A | No description available 
    58515  
    58516 Chain information for fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif B
    58517 #15.2 
    58518 --- 
    58519 Chain | Description 
    58520 B | No description available 
    58521  
    58522 
    58523 > hide #15.1 models
    58524 
    58525 > show #15.1 models
    58526 
    58527 > hide #15.2 models
    58528 
    58529 > select add #15.1
    58530 
    58531 2637 atoms, 2686 bonds, 319 residues, 1 model selected 
    58532 
    58533 > select add #14.4
    58534 
    58535 5491 atoms, 5600 bonds, 675 residues, 2 models selected 
    58536 
    58537 > select add #14.3
    58538 
    58539 6846 atoms, 6988 bonds, 837 residues, 3 models selected 
    58540 
    58541 > select add #14.2
    58542 
    58543 8304 atoms, 8476 bonds, 1012 residues, 4 models selected 
    58544 
    58545 > select add #14.1
    58546 
    58547 9846 atoms, 10040 bonds, 1201 residues, 5 models selected 
    58548 
    58549 > show #!5 models
    58550 
    58551 > hide #!5 models
    58552 
    58553 > show #!4 models
    58554 
    58555 > select clear
    58556 
    58557 > select add #13
    58558 
    58559 6992 atoms, 7126 bonds, 845 residues, 1 model selected 
    58560 
    58561 > ui mousemode right "rotate selected models"
    58562 
    58563 > view matrix models
    58564 > #13,0.99917,0.0010713,-0.040602,11.396,-0.0082341,0.98424,-0.17667,53.883,0.039772,0.17685,0.98343,-30.897
    58565 
    58566 > ui mousemode right "translate selected models"
    58567 
    58568 > view matrix models
    58569 > #13,0.99917,0.0010713,-0.040602,10.523,-0.0082341,0.98424,-0.17667,49.692,0.039772,0.17685,0.98343,-30.883
    58570 
    58571 > view orient
    58572 
    58573 > split #15turn x 90
    58574 
    58575 Expected a structures specifier or a keyword 
    58576 
    58577 > turn x 90
    58578 
    58579 [Repeated 1 time(s)]
    58580 
    58581 > hide #!4 models
    58582 
    58583 > select clear
    58584 
    58585 > show #!3 models
    58586 
    58587 > show #!4 models
    58588 
    58589 > select add #13
    58590 
    58591 6992 atoms, 7126 bonds, 845 residues, 1 model selected 
    58592 
    58593 > select add #14
    58594 
    58595 14201 atoms, 14480 bonds, 1727 residues, 6 models selected 
    58596 
    58597 > select add #15.1
    58598 
    58599 16838 atoms, 17166 bonds, 2046 residues, 7 models selected 
    58600 
    58601 > save /Users/shoichi/Desktop/Cage_PflDC_JMB_Modified.pdb selectedOnly true
    58602 
    58603 > open /Users/shoichi/Desktop/Cage_PflDC_JMB_Modified.pdb
    58604 
    58605 Summary of feedback from opening
    58606 /Users/shoichi/Desktop/Cage_PflDC_JMB_Modified.pdb 
    58607 --- 
    58608 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    58609 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    58610 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    58611 8 
    58612 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    58613 1 7 
    58614 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    58615 1 3 
    58616 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    58617 1 3 
    58618 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    58619 1 6 
    58620 59 messages similar to the above omitted 
    58621 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    58622 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    58623 8 
    58624 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    58625 1 7 
    58626 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    58627 1 3 
    58628 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    58629 1 3 
    58630 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    58631 1 6 
    58632 6 messages similar to the above omitted 
    58633  
    58634 Chain information for Cage_PflDC_JMB_Modified.pdb 
    58635 --- 
    58636 Chain | Description 
    58637 16.1/A 16.6/A | No description available 
    58638 16.1/J 16.2/V | No description available 
    58639 16.1/K 16.3/W | No description available 
    58640 16.1/L 16.4/X | No description available 
    58641 16.5/c | No description available 
    58642  
    58643 
    58644 > select clear
    58645 
    58646 > select add #16
    58647 
    58648 16838 atoms, 17166 bonds, 2046 residues, 7 models selected 
    58649 
    58650 > combine #16
    58651 
    58652 Remapping chain ID 'A' in Cage_PflDC_JMB_Modified.pdb #16.6 to 'B' 
    58653 
    58654 > select subtract #16
    58655 
    58656 Nothing selected 
    58657 
    58658 > hide #!16 models
    58659 
    58660 > show #!6 models
    58661 
    58662 > hide #!4 models
    58663 
    58664 Drag select of 83 residues 
    58665 
    58666 > select add #6.1
    58667 
    58668 2066 atoms, 1564 bonds, 254 residues, 6 models selected 
    58669 
    58670 > select add #6.2
    58671 
    58672 3402 atoms, 3052 bonds, 414 residues, 6 models selected 
    58673 
    58674 > select add #6.3
    58675 
    58676 4689 atoms, 4440 bonds, 568 residues, 6 models selected 
    58677 
    58678 > select add #6.13
    58679 
    58680 6092 atoms, 6004 bonds, 739 residues, 6 models selected 
    58681 
    58682 > select add #6.14
    58683 
    58684 7424 atoms, 7492 bonds, 898 residues, 6 models selected 
    58685 
    58686 > select add #6.15
    58687 
    58688 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    58689 
    58690 > select add #6.16
    58691 
    58692 10252 atoms, 10444 bonds, 1241 residues, 7 models selected 
    58693 
    58694 > select subtract #6.16
    58695 
    58696 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    58697 
    58698 > select add #6.28
    58699 
    58700 11564 atoms, 11794 bonds, 1408 residues, 7 models selected 
    58701 
    58702 > select add #6.27
    58703 
    58704 14418 atoms, 14708 bonds, 1764 residues, 8 models selected 
    58705 
    58706 > select subtract #6.27
    58707 
    58708 11564 atoms, 11794 bonds, 1408 residues, 7 models selected 
    58709 
    58710 > select add #6.26
    58711 
    58712 14418 atoms, 14708 bonds, 1764 residues, 8 models selected 
    58713 
    58714 > select subtract #6.26
    58715 
    58716 11564 atoms, 11794 bonds, 1408 residues, 7 models selected 
    58717 
    58718 > select add #6.25
    58719 
    58720 14418 atoms, 14708 bonds, 1764 residues, 8 models selected 
    58721 
    58722 > select subtract #6.25
    58723 
    58724 11564 atoms, 11794 bonds, 1408 residues, 7 models selected 
    58725 
    58726 > select add #6.24
    58727 
    58728 12919 atoms, 13182 bonds, 1570 residues, 8 models selected 
    58729 
    58730 > select subtract #6.28
    58731 
    58732 10065 atoms, 10268 bonds, 1214 residues, 7 models selected 
    58733 
    58734 > select subtract #6.24
    58735 
    58736 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    58737 
    58738 > select add #6.23
    58739 
    58740 10168 atoms, 10368 bonds, 1227 residues, 7 models selected 
    58741 
    58742 > select subtract #6.23
    58743 
    58744 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    58745 
    58746 > select add #6.22
    58747 
    58748 10252 atoms, 10444 bonds, 1241 residues, 7 models selected 
    58749 
    58750 > select subtract #6.22
    58751 
    58752 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    58753 
    58754 > select add #6.21
    58755 
    58756 10065 atoms, 10268 bonds, 1214 residues, 7 models selected 
    58757 
    58758 > select subtract #6.21
    58759 
    58760 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    58761 
    58762 > select add #6.20
    58763 
    58764 10168 atoms, 10368 bonds, 1227 residues, 7 models selected 
    58765 
    58766 > select subtract #6.20
    58767 
    58768 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    58769 
    58770 > select add #6.27
    58771 
    58772 11564 atoms, 11794 bonds, 1408 residues, 7 models selected 
    58773 
    58774 > select subtract #6.27
    58775 
    58776 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    58777 
    58778 > select add #6.28
    58779 
    58780 11564 atoms, 11794 bonds, 1408 residues, 7 models selected 
    58781 
    58782 > select subtract #6.28
    58783 
    58784 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    58785 
    58786 > select add #6.26
    58787 
    58788 11564 atoms, 11794 bonds, 1408 residues, 7 models selected 
    58789 
    58790 > select subtract #6.26
    58791 
    58792 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    58793 
    58794 > select add #6.25
    58795 
    58796 11564 atoms, 11794 bonds, 1408 residues, 7 models selected 
    58797 
    58798 > save /Users/shoichi/Desktop/2nd-template_from_JMB.pdb selectedOnly true
    58799 
    58800 > hide #!6 models
    58801 
    58802 > select clear
    58803 
    58804 > open /Users/shoichi/Desktop/2nd-template_from_JMB.pdb
    58805 
    58806 Summary of feedback from opening /Users/shoichi/Desktop/2nd-
    58807 template_from_JMB.pdb 
    58808 --- 
    58809 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    58810 Start residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1
    58811 42 
    58812 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    58813 8 
    58814 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    58815 1 7 
    58816 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    58817 1 3 
    58818 73 messages similar to the above omitted 
    58819  
    58820 Chain information for 2nd-template_from_JMB.pdb 
    58821 --- 
    58822 Chain | Description 
    58823 18.1/A 18.4/M | No description available 
    58824 18.2/B 18.5/N | No description available 
    58825 18.3/C 18.6/O | No description available 
    58826 18.7/Y | No description available 
    58827  
    58828 
    58829 > combine #18
    58830 
    58831 > matchmaker #17 to #19
    58832 
    58833 Parameters 
    58834 --- 
    58835 Chain pairing | bb 
    58836 Alignment algorithm | Needleman-Wunsch 
    58837 Similarity matrix | BLOSUM-62 
    58838 SS fraction | 0.3 
    58839 Gap open (HH/SS/other) | 18/18/6 
    58840 Gap extend | 1 
    58841 SS matrix |  |  | H | S | O 
    58842 ---|---|---|--- 
    58843 H | 6 | -9 | -6 
    58844 S |  | 6 | -6 
    58845 O |  |  | 4 
    58846 Iteration cutoff | 2 
    58847  
    58848 Matchmaker combination, chain Y (#19) with combination, chain c (#17),
    58849 sequence alignment score = 1828.6 
    58850 RMSD between 356 pruned atom pairs is 0.001 angstroms; (across all 356 pairs:
    58851 0.001) 
    58852  
    58853 
    58854 > hide #!18 models
    58855 
    58856 > hide #19 models
    58857 
    58858 > show #!18 models
    58859 
    58860 > hide #!18 models
    58861 
    58862 > show #19 models
    58863 
    58864 > hide #19 models
    58865 
    58866 > hide #17 models
    58867 
    58868 > show #17 models
    58869 
    58870 > close #17
    58871 
    58872 > show #!18 models
    58873 
    58874 > hide #!18 models
    58875 
    58876 > hide #!14 models
    58877 
    58878 > show #!14 models
    58879 
    58880 > hide #!15 models
    58881 
    58882 > show #!15 models
    58883 
    58884 > close #16
    58885 
    58886 > select add #14
    58887 
    58888 7209 atoms, 7354 bonds, 882 residues, 5 models selected 
    58889 
    58890 > select add #15
    58891 
    58892 10081 atoms, 10284 bonds, 1228 residues, 8 models selected 
    58893 
    58894 > show #!5 models
    58895 
    58896 > hide #!5 models
    58897 
    58898 > show #!4 models
    58899 
    58900 > view matrix models
    58901 > #14,1,0,0,3.3676,0,1,0,-0.44796,0,0,1,-0.20608,#15,1,0,0,3.3676,0,1,0,-0.44796,0,0,1,-0.20608
    58902 
    58903 > view matrix models
    58904 > #14,1,0,0,6.2868,0,1,0,0.2217,0,0,1,-0.99469,#15,1,0,0,6.2868,0,1,0,0.2217,0,0,1,-0.99469
    58905 
    58906 > view matrix models
    58907 > #14,1,0,0,2.3606,0,1,0,0.057463,0,0,1,-1.1217,#15,1,0,0,2.3606,0,1,0,0.057463,0,0,1,-1.1217
    58908 
    58909 > ui mousemode right "rotate selected models"
    58910 
    58911 > view matrix models
    58912 > #14,0.99999,0.00061754,0.0051091,1.1528,-0.00062903,1,0.0022477,-0.23281,-0.0051077,-0.0022509,0.99998,0.85808,#15,0.99999,0.00061754,0.0051091,1.1528,-0.00062903,1,0.0022477,-0.23281,-0.0051077,-0.0022509,0.99998,0.85808
    58913 
    58914 > undo
    58915 
    58916 > ui mousemode right "translate selected models"
    58917 
    58918 > view matrix models
    58919 > #14,1,0,0,2.633,0,1,0,0.17005,0,0,1,-1.182,#15,1,0,0,2.633,0,1,0,0.17005,0,0,1,-1.182
    58920 
    58921 > view matrix models
    58922 > #14,1,0,0,3.0941,0,1,0,0.17912,0,0,1,-1.2208,#15,1,0,0,3.0941,0,1,0,0.17912,0,0,1,-1.2208
    58923 
    58924 > view matrix models
    58925 > #14,1,0,0,3.0428,0,1,0,-0.8073,0,0,1,-1.045,#15,1,0,0,3.0428,0,1,0,-0.8073,0,0,1,-1.045
    58926 
    58927 > undo
    58928 
    58929 [Repeated 6 time(s)]
    58930 
    58931 > show #!4 models
    58932 
    58933 > view matrix models
    58934 > #14,1,0,0,-0.29071,0,1,0,-2.0166,0,0,1,0.11827,#15,1,0,0,-0.29071,0,1,0,-2.0166,0,0,1,0.11827
    58935 
    58936 > ui mousemode right "rotate selected models"
    58937 
    58938 > view matrix models
    58939 > #14,0.99998,0.0030942,0.0046981,-1.8586,-0.0032499,0.99943,0.033503,-8.1288,-0.0045918,-0.033518,0.99943,7.731,#15,0.99998,0.0030942,0.0046981,-1.8586,-0.0032499,0.99943,0.033503,-8.1288,-0.0045918,-0.033518,0.99943,7.731
    58940 
    58941 > undo
    58942 
    58943 [Repeated 1 time(s)]
    58944 
    58945 > select clear
    58946 
    58947 > show #!12 models
    58948 
    58949 > hide #!12 models
    58950 
    58951 > show #!18 models
    58952 
    58953 > hide #!18 models
    58954 
    58955 > show #!18 models
    58956 
    58957 > show #!6 models
    58958 
    58959 > hide #!6 models
    58960 
    58961 > show #!6 models
    58962 
    58963 > hide #!6 models
    58964 
    58965 > show #!6 models
    58966 
    58967 > hide #!6 models
    58968 
    58969 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    58970 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    58971 > refinment/PflCD_Docking_model_Fig3/REDO/Models/Jack_models/Modify/Cage_PflDC_JMB_Modified.pdb"
    58972 
    58973 Summary of feedback from opening /Volumes/Lab Backup/Jun Liu Lab 2025/Project
    58974 files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    58975 refinment/PflCD_Docking_model_Fig3/REDO/Models/Jack_models/Modify/Cage_PflDC_JMB_Modified.pdb 
    58976 --- 
    58977 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    58978 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    58979 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    58980 8 
    58981 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    58982 1 7 
    58983 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    58984 1 3 
    58985 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    58986 1 3 
    58987 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    58988 1 6 
    58989 59 messages similar to the above omitted 
    58990 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    58991 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    58992 8 
    58993 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    58994 1 7 
    58995 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    58996 1 3 
    58997 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    58998 1 3 
    58999 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    59000 1 6 
    59001 6 messages similar to the above omitted 
    59002  
    59003 Chain information for Cage_PflDC_JMB_Modified.pdb 
    59004 --- 
    59005 Chain | Description 
    59006 16.1/A 16.6/A | No description available 
    59007 16.1/J 16.2/V | No description available 
    59008 16.1/K 16.3/W | No description available 
    59009 16.1/L 16.4/X | No description available 
    59010 16.5/c | No description available 
    59011  
    59012 
    59013 > combine #16
    59014 
    59015 Remapping chain ID 'A' in Cage_PflDC_JMB_Modified.pdb #16.6 to 'B' 
    59016 
    59017 > matchmaker #17 to #19
    59018 
    59019 Parameters 
    59020 --- 
    59021 Chain pairing | bb 
    59022 Alignment algorithm | Needleman-Wunsch 
    59023 Similarity matrix | BLOSUM-62 
    59024 SS fraction | 0.3 
    59025 Gap open (HH/SS/other) | 18/18/6 
    59026 Gap extend | 1 
    59027 SS matrix |  |  | H | S | O 
    59028 ---|---|---|--- 
    59029 H | 6 | -9 | -6 
    59030 S |  | 6 | -6 
    59031 O |  |  | 4 
    59032 Iteration cutoff | 2 
    59033  
    59034 Matchmaker combination, chain Y (#19) with combination, chain c (#17),
    59035 sequence alignment score = 1828.6 
    59036 RMSD between 356 pruned atom pairs is 0.001 angstroms; (across all 356 pairs:
    59037 0.001) 
    59038  
    59039 
    59040 > hide #17 models
    59041 
    59042 > show #17 models
    59043 
    59044 > hide #!18 models
    59045 
    59046 > show #!6 models
    59047 
    59048 > hide #6.28 models
    59049 
    59050 > show #6.28 models
    59051 
    59052 > hide #!4 models
    59053 
    59054 > hide #!3 models
    59055 
    59056 > show #!3 models
    59057 
    59058 Drag select of 144 residues 
    59059 
    59060 > select add #6.7
    59061 
    59062 2479 atoms, 1564 bonds, 303 residues, 6 models selected 
    59063 
    59064 > select add #6.8
    59065 
    59066 3723 atoms, 3052 bonds, 452 residues, 6 models selected 
    59067 
    59068 > select add #6.9
    59069 
    59070 4933 atoms, 4440 bonds, 597 residues, 6 models selected 
    59071 
    59072 > hide #!3 models
    59073 
    59074 > select add #6.19
    59075 
    59076 6230 atoms, 6004 bonds, 756 residues, 6 models selected 
    59077 
    59078 > select add #6.20
    59079 
    59080 7480 atoms, 7492 bonds, 905 residues, 6 models selected 
    59081 
    59082 > select add #6.21
    59083 
    59084 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    59085 Drag select of 108 residues 
    59086 
    59087 > select add #6.27
    59088 
    59089 11564 atoms, 11794 bonds, 1408 residues, 7 models selected 
    59090 
    59091 > save /Users/shoichi/Desktop/3rd_template_JMB.pdb selectedOnly true
    59092 
    59093 > open /Users/shoichi/Desktop/3rd_template_JMB.pdb
    59094 
    59095 Summary of feedback from opening /Users/shoichi/Desktop/3rd_template_JMB.pdb 
    59096 --- 
    59097 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    59098 Start residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1
    59099 42 
    59100 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    59101 8 
    59102 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    59103 1 7 
    59104 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    59105 1 3 
    59106 86 messages similar to the above omitted 
    59107  
    59108 Chain information for 3rd_template_JMB.pdb 
    59109 --- 
    59110 Chain | Description 
    59111 20.1/G 20.4/S | No description available 
    59112 20.2/H 20.5/T | No description available 
    59113 20.3/I 20.6/U | No description available 
    59114 20.7/b | No description available 
    59115  
    59116 
    59117 > combine #20
    59118 
    59119 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    59120 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    59121 > refinment/PflCD_Docking_model_Fig3/REDO/Models/Jack_models/Modify/Cage_PflDC_JMB_Modified.pdb"
    59122 
    59123 Summary of feedback from opening /Volumes/Lab Backup/Jun Liu Lab 2025/Project
    59124 files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    59125 refinment/PflCD_Docking_model_Fig3/REDO/Models/Jack_models/Modify/Cage_PflDC_JMB_Modified.pdb 
    59126 --- 
    59127 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    59128 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    59129 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    59130 8 
    59131 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    59132 1 7 
    59133 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    59134 1 3 
    59135 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    59136 1 3 
    59137 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    59138 1 6 
    59139 59 messages similar to the above omitted 
    59140 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    59141 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    59142 8 
    59143 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    59144 1 7 
    59145 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    59146 1 3 
    59147 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    59148 1 3 
    59149 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    59150 1 6 
    59151 6 messages similar to the above omitted 
    59152  
    59153 Chain information for Cage_PflDC_JMB_Modified.pdb 
    59154 --- 
    59155 Chain | Description 
    59156 22.1/A 22.6/A | No description available 
    59157 22.1/J 22.2/V | No description available 
    59158 22.1/K 22.3/W | No description available 
    59159 22.1/L 22.4/X | No description available 
    59160 22.5/c | No description available 
    59161  
    59162 
    59163 > close #22
    59164 
    59165 > combine #16
    59166 
    59167 Remapping chain ID 'A' in Cage_PflDC_JMB_Modified.pdb #16.6 to 'B' 
    59168 
    59169 > matchmaker #22 to #21
    59170 
    59171 Parameters 
    59172 --- 
    59173 Chain pairing | bb 
    59174 Alignment algorithm | Needleman-Wunsch 
    59175 Similarity matrix | BLOSUM-62 
    59176 SS fraction | 0.3 
    59177 Gap open (HH/SS/other) | 18/18/6 
    59178 Gap extend | 1 
    59179 SS matrix |  |  | H | S | O 
    59180 ---|---|---|--- 
    59181 H | 6 | -9 | -6 
    59182 S |  | 6 | -6 
    59183 O |  |  | 4 
    59184 Iteration cutoff | 2 
    59185  
    59186 Matchmaker combination, chain b (#21) with combination, chain c (#22),
    59187 sequence alignment score = 1828.6 
    59188 RMSD between 356 pruned atom pairs is 0.001 angstroms; (across all 356 pairs:
    59189 0.001) 
    59190  
    59191 
    59192 > select clear
    59193 
    59194 > hide #!6 models
    59195 
    59196 > hide #21 models
    59197 
    59198 > hide #!20 models
    59199 
    59200 > hide #13 models
    59201 
    59202 > hide #!14 models
    59203 
    59204 > show #!14 models
    59205 
    59206 > hide #!15 models
    59207 
    59208 > hide #!16 models
    59209 
    59210 > show #!16 models
    59211 
    59212 > hide #!16 models
    59213 
    59214 > hide #17 models
    59215 
    59216 > show #17 models
    59217 
    59218 > hide #!14 models
    59219 
    59220 > show #!16 models
    59221 
    59222 > show #!5 models
    59223 
    59224 > hide #!5 models
    59225 
    59226 > show #!4 models
    59227 
    59228 > hide #!4 models
    59229 
    59230 > show #!4 models
    59231 
    59232 > show #!3 models
    59233 
    59234 > hide #!4 models
    59235 
    59236 > hide #!3 models
    59237 
    59238 > split #22
    59239 
    59240 Split combination (#22) into 9 models 
    59241 Chain information for combination A #22.1 
    59242 --- 
    59243 Chain | Description 
    59244 A | No description available 
    59245  
    59246 Chain information for combination B #22.2 
    59247 --- 
    59248 Chain | Description 
    59249 B | No description available 
    59250  
    59251 Chain information for combination J #22.3 
    59252 --- 
    59253 Chain | Description 
    59254 J | No description available 
    59255  
    59256 Chain information for combination K #22.4 
    59257 --- 
    59258 Chain | Description 
    59259 K | No description available 
    59260  
    59261 Chain information for combination L #22.5 
    59262 --- 
    59263 Chain | Description 
    59264 L | No description available 
    59265  
    59266 Chain information for combination V #22.6 
    59267 --- 
    59268 Chain | Description 
    59269 V | No description available 
    59270  
    59271 Chain information for combination W #22.7 
    59272 --- 
    59273 Chain | Description 
    59274 W | No description available 
    59275  
    59276 Chain information for combination X #22.8 
    59277 --- 
    59278 Chain | Description 
    59279 X | No description available 
    59280  
    59281 Chain information for combination c #22.9 
    59282 --- 
    59283 Chain | Description 
    59284 c | No description available 
    59285  
    59286 
    59287 > hide #22.9 models
    59288 
    59289 > show #22.9 models
    59290 
    59291 > hide #22.1 models
    59292 
    59293 > hide #22.3 models
    59294 
    59295 > hide #22.4 models
    59296 
    59297 > hide #22.5 models
    59298 
    59299 > close #22.3-5
    59300 
    59301 > close #22.1
    59302 
    59303 > save /Users/shoichi/Desktop/Docking_models_07232025.cxs includeMaps true
    59304 
    59305 ——— End of log from Wed Jul 23 10:13:39 2025 ———
    59306 
    59307 opened ChimeraX session 
    59308 
    59309 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    59310 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    59311 > refinment/PflCD_Docking_model_Fig3/REDO/Models/Jack_models/One_Cage-
    59312 > PflAB_JMB.pdb"
    59313 
    59314 Chain information for One_Cage-PflAB_JMB.pdb 
    59315 --- 
    59316 Chain | Description 
    59317 23.1/A 23.2/A 23.3/A 23.4/A | No description available 
    59318 23.5/A 23.6/A 23.7/A 23.8/A | No description available 
    59319 23.9/A 23.10/A 23.11/A 23.12/A 23.13/A | No description available 
    59320 23.1/B 23.2/B 23.3/B 23.4/B | No description available 
    59321 23.9/B 23.10/B 23.11/B 23.12/B 23.13/B | No description available 
    59322 23.1/C 23.2/C 23.3/C 23.4/C | No description available 
    59323  
    59324 
    59325 > combine #23
    59326 
    59327 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.2 to 'D' 
    59328 Remapping chain ID 'B' in One_Cage-PflAB_JMB.pdb #23.2 to 'E' 
    59329 Remapping chain ID 'C' in One_Cage-PflAB_JMB.pdb #23.2 to 'F' 
    59330 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.3 to 'G' 
    59331 Remapping chain ID 'B' in One_Cage-PflAB_JMB.pdb #23.3 to 'H' 
    59332 Remapping chain ID 'C' in One_Cage-PflAB_JMB.pdb #23.3 to 'I' 
    59333 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.4 to 'J' 
    59334 Remapping chain ID 'B' in One_Cage-PflAB_JMB.pdb #23.4 to 'K' 
    59335 Remapping chain ID 'C' in One_Cage-PflAB_JMB.pdb #23.4 to 'L' 
    59336 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.5 to 'M' 
    59337 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.6 to 'N' 
    59338 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.7 to 'O' 
    59339 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.8 to 'P' 
    59340 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.9 to 'Q' 
    59341 Remapping chain ID 'B' in One_Cage-PflAB_JMB.pdb #23.9 to 'R' 
    59342 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.10 to 'S' 
    59343 Remapping chain ID 'B' in One_Cage-PflAB_JMB.pdb #23.10 to 'T' 
    59344 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.11 to 'U' 
    59345 Remapping chain ID 'B' in One_Cage-PflAB_JMB.pdb #23.11 to 'V' 
    59346 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.12 to 'W' 
    59347 Remapping chain ID 'B' in One_Cage-PflAB_JMB.pdb #23.12 to 'X' 
    59348 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.13 to 'Y' 
    59349 Remapping chain ID 'B' in One_Cage-PflAB_JMB.pdb #23.13 to 'Z' 
    59350 
    59351 > hide #!23 models
    59352 
    59353 > hide #!24 models
    59354 
    59355 > select add #22
    59356 
    59357 9846 atoms, 10040 bonds, 1201 residues, 6 models selected 
    59358 
    59359 > select add #17
    59360 
    59361 26684 atoms, 27206 bonds, 3247 residues, 7 models selected 
    59362 
    59363 > select add #16
    59364 
    59365 43522 atoms, 44372 bonds, 5293 residues, 14 models selected 
    59366 
    59367 > save /Users/shoichi/Desktop/CagePflCD_modified_JMB.pdb selectedOnly true
    59368 
    59369 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    59370 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    59371 > refinment/PflCD_Docking_model_Fig3/REDO/Models/Jack_models/Final-
    59372 > Cage_PflDC_JMB_Modified.pdb"
    59373 
    59374 Chain information for Final-Cage_PflDC_JMB_Modified.pdb 
    59375 --- 
    59376 Chain | Description 
    59377 25.1/A 25.6/A | No description available 
    59378 25.1/J 25.2/V | No description available 
    59379 25.1/K 25.3/W | No description available 
    59380 25.1/L 25.4/X | No description available 
    59381 25.5/c | No description available 
    59382  
    59383 
    59384 > hide #!16 models
    59385 
    59386 > hide #17 models
    59387 
    59388 > hide #!22 models
    59389 
    59390 > select clear
    59391 
    59392 > close #25
    59393 
    59394 > show #!22 models
    59395 
    59396 > show #21 models
    59397 
    59398 > hide #21 models
    59399 
    59400 > show #19 models
    59401 
    59402 > show #17 models
    59403 
    59404 > hide #17 models
    59405 
    59406 > show #!15 models
    59407 
    59408 > hide #!15 models
    59409 
    59410 > show #!14 models
    59411 
    59412 > hide #!14 models
    59413 
    59414 > show #13 models
    59415 
    59416 > hide #13 models
    59417 
    59418 > show #17 models
    59419 
    59420 > hide #17 models
    59421 
    59422 > show #!16 models
    59423 
    59424 > select add #16
    59425 
    59426 16838 atoms, 17166 bonds, 2046 residues, 7 models selected 
    59427 
    59428 > select add #19
    59429 
    59430 28402 atoms, 28960 bonds, 3454 residues, 8 models selected 
    59431 
    59432 > select add #22
    59433 
    59434 38248 atoms, 39000 bonds, 4655 residues, 14 models selected 
    59435 
    59436 > hide #19 models
    59437 
    59438 > select subtract #19
    59439 
    59440 26684 atoms, 27206 bonds, 3247 residues, 13 models selected 
    59441 
    59442 > select add #21
    59443 
    59444 38248 atoms, 39000 bonds, 4655 residues, 14 models selected 
    59445 
    59446 > show #21 models
    59447 
    59448 > hide #21 models
    59449 
    59450 > show #21 models
    59451 
    59452 > select subtract #21
    59453 
    59454 26684 atoms, 27206 bonds, 3247 residues, 13 models selected 
    59455 
    59456 > hide #21 models
    59457 
    59458 > show #17 models
    59459 
    59460 > select add #17
    59461 
    59462 43522 atoms, 44372 bonds, 5293 residues, 14 models selected 
    59463 
    59464 > save /Users/shoichi/Desktop/Final-Cage-PflCD_JMB_Modified.pdb selectedOnly
    59465 > true
    59466 
    59467 > open /Users/shoichi/Desktop/Final-Cage-PflCD_JMB_Modified.pdb
    59468 
    59469 Summary of feedback from opening /Users/shoichi/Desktop/Final-Cage-
    59470 PflCD_JMB_Modified.pdb 
    59471 --- 
    59472 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    59473 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    59474 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    59475 8 
    59476 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    59477 1 7 
    59478 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    59479 1 3 
    59480 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    59481 1 3 
    59482 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    59483 1 6 
    59484 59 messages similar to the above omitted 
    59485 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    59486 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    59487 8 
    59488 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    59489 1 7 
    59490 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    59491 1 3 
    59492 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    59493 1 3 
    59494 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    59495 1 6 
    59496 7 messages similar to the above omitted 
    59497 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    59498 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    59499 8 
    59500 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    59501 1 7 
    59502 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    59503 1 3 
    59504 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    59505 1 3 
    59506 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    59507 1 6 
    59508 71 messages similar to the above omitted 
    59509  
    59510 Chain information for Final-Cage-PflCD_JMB_Modified.pdb 
    59511 --- 
    59512 Chain | Description 
    59513 25.1/A 25.6/A 25.7/A 25.7/B 25.8/B | No description available 
    59514 25.1/J 25.7/J 25.2/V 25.7/V 25.9/V | No description available 
    59515 25.1/K 25.7/K 25.3/W 25.7/W 25.10/W | No description available 
    59516 25.1/L 25.7/L 25.4/X 25.7/X 25.11/X | No description available 
    59517 25.5/c 25.7/c 25.12/c | No description available 
    59518  
    59519 
    59520 The cached device pixel ratio value was stale on window expose. Please file a
    59521 QTBUG which explains how to reproduce. 
    59522 
    59523 > close #25
    59524 
    59525 > hide #!16 models
    59526 
    59527 > show #!16 models
    59528 
    59529 > hide #!22 models
    59530 
    59531 > show #!22 models
    59532 
    59533 > hide #17 models
    59534 
    59535 > show #17 models
    59536 
    59537 > show #!5 models
    59538 
    59539 > hide #!5 models
    59540 
    59541 > show #!3 models
    59542 
    59543 > hide #!3 models
    59544 
    59545 > show #!3 models
    59546 
    59547 > show #!4 models
    59548 
    59549 > hide #!4 models
    59550 
    59551 > show #!4 models
    59552 
    59553 > hide #!4 models
    59554 
    59555 > hide #!22 models
    59556 
    59557 > show #!22 models
    59558 
    59559 > hide #17 models
    59560 
    59561 > show #17 models
    59562 
    59563 > hide #17 models
    59564 
    59565 > show #17 models
    59566 
    59567 > hide #17 models
    59568 
    59569 > show #17 models
    59570 
    59571 > combine #16
    59572 
    59573 Remapping chain ID 'A' in Cage_PflDC_JMB_Modified.pdb #16.6 to 'B' 
    59574 
    59575 > combine #17
    59576 
    59577 > combine #22
    59578 
    59579 > hide #!16 models
    59580 
    59581 > hide #17 models
    59582 
    59583 > hide #!22 models
    59584 
    59585 > select clear
    59586 
    59587 > select add #25
    59588 
    59589 16838 atoms, 17166 bonds, 2046 residues, 1 model selected 
    59590 
    59591 > select add #26
    59592 
    59593 33676 atoms, 34332 bonds, 4092 residues, 2 models selected 
    59594 
    59595 > select add #27
    59596 
    59597 43522 atoms, 44372 bonds, 5293 residues, 3 models selected 
    59598 
    59599 > save /Users/shoichi/Desktop/Final-Cage-PflCD_JMB_Modified.pdb selectedOnly
    59600 > true
    59601 
    59602 > select clear
    59603 
    59604 > hide #25 models
    59605 
    59606 > hide #26 models
    59607 
    59608 > hide #27 models
    59609 
    59610 > open /Users/shoichi/Desktop/Final-Cage-PflCD_JMB_Modified.pdb
    59611 
    59612 Summary of feedback from opening /Users/shoichi/Desktop/Final-Cage-
    59613 PflCD_JMB_Modified.pdb 
    59614 --- 
    59615 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    59616 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    59617 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    59618 8 
    59619 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    59620 1 7 
    59621 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    59622 1 3 
    59623 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    59624 1 3 
    59625 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    59626 1 6 
    59627 7 messages similar to the above omitted 
    59628 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    59629 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    59630 8 
    59631 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    59632 1 7 
    59633 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    59634 1 3 
    59635 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    59636 1 3 
    59637 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    59638 1 6 
    59639 19 messages similar to the above omitted 
    59640  
    59641 Chain information for Final-Cage-PflCD_JMB_Modified.pdb 
    59642 --- 
    59643 Chain | Description 
    59644 28.1/A 28.2/A 28.1/B 28.2/B 28.3/B | No description available 
    59645 28.1/J 28.2/J 28.1/V 28.2/V 28.3/V | No description available 
    59646 28.1/K 28.2/K 28.1/W 28.2/W 28.3/W | No description available 
    59647 28.1/L 28.2/L 28.1/X 28.2/X 28.3/X | No description available 
    59648 28.1/c 28.2/c 28.3/c | No description available 
    59649  
    59650 
    59651 > close #25-27
    59652 
    59653 > select add #28
    59654 
    59655 43522 atoms, 44372 bonds, 5293 residues, 4 models selected 
    59656 
    59657 > hide sel atoms
    59658 
    59659 > show sel cartoons
    59660 
    59661 > select clear
    59662 
    59663 > combine #28
    59664 
    59665 Remapping chain ID 'A' in Final-Cage-PflCD_JMB_Modified.pdb #28.2 to 'C' 
    59666 Remapping chain ID 'B' in Final-Cage-PflCD_JMB_Modified.pdb #28.2 to 'D' 
    59667 Remapping chain ID 'J' in Final-Cage-PflCD_JMB_Modified.pdb #28.2 to 'M' 
    59668 Remapping chain ID 'K' in Final-Cage-PflCD_JMB_Modified.pdb #28.2 to 'N' 
    59669 Remapping chain ID 'L' in Final-Cage-PflCD_JMB_Modified.pdb #28.2 to 'O' 
    59670 Remapping chain ID 'V' in Final-Cage-PflCD_JMB_Modified.pdb #28.2 to 'Y' 
    59671 Remapping chain ID 'W' in Final-Cage-PflCD_JMB_Modified.pdb #28.2 to 'Z' 
    59672 Remapping chain ID 'X' in Final-Cage-PflCD_JMB_Modified.pdb #28.2 to 'a' 
    59673 Remapping chain ID 'c' in Final-Cage-PflCD_JMB_Modified.pdb #28.2 to 'd' 
    59674 Remapping chain ID 'B' in Final-Cage-PflCD_JMB_Modified.pdb #28.3 to 'E' 
    59675 Remapping chain ID 'V' in Final-Cage-PflCD_JMB_Modified.pdb #28.3 to 'b' 
    59676 Remapping chain ID 'W' in Final-Cage-PflCD_JMB_Modified.pdb #28.3 to 'e' 
    59677 Remapping chain ID 'X' in Final-Cage-PflCD_JMB_Modified.pdb #28.3 to 'f' 
    59678 Remapping chain ID 'c' in Final-Cage-PflCD_JMB_Modified.pdb #28.3 to 'g' 
    59679 
    59680 > show #!24 models
    59681 
    59682 > matchmaker #24 to #25
    59683 
    59684 Parameters 
    59685 --- 
    59686 Chain pairing | bb 
    59687 Alignment algorithm | Needleman-Wunsch 
    59688 Similarity matrix | BLOSUM-62 
    59689 SS fraction | 0.3 
    59690 Gap open (HH/SS/other) | 18/18/6 
    59691 Gap extend | 1 
    59692 SS matrix |  |  | H | S | O 
    59693 ---|---|---|--- 
    59694 H | 6 | -9 | -6 
    59695 S |  | 6 | -6 
    59696 O |  |  | 4 
    59697 Iteration cutoff | 2 
    59698  
    59699 Matchmaker combination, chain c (#25) with combination, chain M (#24),
    59700 sequence alignment score = 1828.6 
    59701 RMSD between 356 pruned atom pairs is 0.001 angstroms; (across all 356 pairs:
    59702 0.001) 
    59703  
    59704 
    59705 > hide #!3 models
    59706 
    59707 > show #!4 models
    59708 
    59709 > hide #25 models
    59710 
    59711 > show #25 models
    59712 
    59713 > hide #25 models
    59714 
    59715 > hide #!24 models
    59716 
    59717 > show #!24 models
    59718 
    59719 > select add #24
    59720 
    59721 60311 atoms, 61486 bonds, 5 pseudobonds, 7438 residues, 2 models selected 
    59722 
    59723 > ui mousemode right "translate selected models"
    59724 
    59725 > view matrix models
    59726 > #24,0.87058,0.49184,0.013279,-141.73,-0.49173,0.87068,-0.010718,163.17,-0.016833,0.0028008,0.99985,-72.067
    59727 
    59728 > ui mousemode right "rotate selected models"
    59729 
    59730 > view matrix models
    59731 > #24,0.99976,0.01729,0.013741,-87.931,-0.016229,0.99713,-0.073914,14.176,-0.01498,0.073673,0.99717,-85.685
    59732 
    59733 > ui mousemode right "translate selected models"
    59734 
    59735 > view matrix models
    59736 > #24,0.99976,0.01729,0.013741,-78.781,-0.016229,0.99713,-0.073914,96.218,-0.01498,0.073673,0.99717,-90.282
    59737 
    59738 > matchmaker #24 to #25
    59739 
    59740 Parameters 
    59741 --- 
    59742 Chain pairing | bb 
    59743 Alignment algorithm | Needleman-Wunsch 
    59744 Similarity matrix | BLOSUM-62 
    59745 SS fraction | 0.3 
    59746 Gap open (HH/SS/other) | 18/18/6 
    59747 Gap extend | 1 
    59748 SS matrix |  |  | H | S | O 
    59749 ---|---|---|--- 
    59750 H | 6 | -9 | -6 
    59751 S |  | 6 | -6 
    59752 O |  |  | 4 
    59753 Iteration cutoff | 2 
    59754  
    59755 Matchmaker combination, chain c (#25) with combination, chain M (#24),
    59756 sequence alignment score = 1828.6 
    59757 RMSD between 356 pruned atom pairs is 0.001 angstroms; (across all 356 pairs:
    59758 0.001) 
    59759  
    59760 
    59761 > view matrix models
    59762 > #24,0.87058,0.49184,0.013279,-179.73,-0.49173,0.87068,-0.010718,164.3,-0.016833,0.0028008,0.99985,-75.657
    59763 
    59764 > ui mousemode right "rotate selected models"
    59765 
    59766 > view matrix models
    59767 > #24,0.99946,-0.030105,0.01296,-116.29,0.030253,0.99948,-0.011403,-19.029,-0.01261,0.011789,0.99985,-78.7
    59768 
    59769 > ui mousemode right "translate selected models"
    59770 
    59771 > view matrix models
    59772 > #24,0.99946,-0.030105,0.01296,-79.579,0.030253,0.99948,-0.011403,0.83744,-0.01261,0.011789,0.99985,-78.996
    59773 
    59774 > view matrix models
    59775 > #24,0.99946,-0.030105,0.01296,-54.482,0.030253,0.99948,-0.011403,-5.1535,-0.01261,0.011789,0.99985,-87.925
    59776 
    59777 > ui tool show "Fit in Map"
    59778 
    59779 The cached device pixel ratio value was stale on window expose. Please file a
    59780 QTBUG which explains how to reproduce. 
    59781 
    59782 [Repeated 1 time(s)]
    59783 
    59784 > fitmap #24 inMap #4
    59785 
    59786 Fit molecule combination (#24) to map Cage-PflAB.mrc gaussian (#4) using 60311
    59787 atoms 
    59788 average map value = 0.006174, steps = 160 
    59789 shifted from previous position = 14.8 
    59790 rotated from previous position = 9.71 degrees 
    59791 atoms outside contour = 39815, contour level = 0.0013059 
    59792  
    59793 Position of combination (#24) relative to Cage-PflAB.mrc gaussian (#4)
    59794 coordinates: 
    59795 Matrix rotation and translation 
    59796 0.98824437 -0.01429463 -0.15221278 -8.80734476 
    59797 0.00813284 0.99912492 -0.04102737 15.79098852 
    59798 0.15266605 0.03930714 0.98749584 -133.39658319 
    59799 Axis 0.25415733 -0.96455663 0.07095463 
    59800 Axis point 854.79901291 0.00000000 -78.90503148 
    59801 Rotation angle (degrees) 9.09320222 
    59802 Shift along axis -26.93485970 
    59803  
    59804 
    59805 > fitmap #24 inMap #4
    59806 
    59807 Fit molecule combination (#24) to map Cage-PflAB.mrc gaussian (#4) using 60311
    59808 atoms 
    59809 average map value = 0.006174, steps = 36 
    59810 shifted from previous position = 0.00634 
    59811 rotated from previous position = 0.00281 degrees 
    59812 atoms outside contour = 39814, contour level = 0.0013059 
    59813  
    59814 Position of combination (#24) relative to Cage-PflAB.mrc gaussian (#4)
    59815 coordinates: 
    59816 Matrix rotation and translation 
    59817 0.98823741 -0.01429693 -0.15225776 -8.79356980 
    59818 0.00813057 0.99912420 -0.04104537 15.80213354 
    59819 0.15271123 0.03932463 0.98748815 -133.41457102 
    59820 Axis 0.25419238 -0.96454897 0.07093318 
    59821 Axis point 854.66924028 0.00000000 -78.80434462 
    59822 Rotation angle (degrees) 9.09598705 
    59823 Shift along axis -26.94070962 
    59824  
    59825 
    59826 > fitmap #24 inMap #4
    59827 
    59828 Fit molecule combination (#24) to map Cage-PflAB.mrc gaussian (#4) using 60311
    59829 atoms 
    59830 average map value = 0.006174, steps = 40 
    59831 shifted from previous position = 0.00288 
    59832 rotated from previous position = 0.00501 degrees 
    59833 atoms outside contour = 39813, contour level = 0.0013059 
    59834  
    59835 Position of combination (#24) relative to Cage-PflAB.mrc gaussian (#4)
    59836 coordinates: 
    59837 Matrix rotation and translation 
    59838 0.98822490 -0.01433503 -0.15233535 -8.75430498 
    59839 0.00816568 0.99912384 -0.04104722 15.79083374 
    59840 0.15279029 0.03931996 0.98747611 -133.43773924 
    59841 Axis 0.25405846 -0.96456978 0.07112973 
    59842 Axis point 854.35445149 0.00000000 -78.56573805 
    59843 Rotation angle (degrees) 9.10050113 
    59844 Shift along axis -26.94685726 
    59845  
    59846 
    59847 > view matrix models
    59848 > #24,0.98822,-0.014335,-0.15234,-13.617,0.0081657,0.99912,-0.041047,74.125,0.15279,0.03932,0.98748,-139.29
    59849 
    59850 > fitmap #24 inMap #4
    59851 
    59852 Fit molecule combination (#24) to map Cage-PflAB.mrc gaussian (#4) using 60311
    59853 atoms 
    59854 average map value = 0.0166, steps = 240 
    59855 shifted from previous position = 13.5 
    59856 rotated from previous position = 15.8 degrees 
    59857 atoms outside contour = 34391, contour level = 0.0013059 
    59858  
    59859 Position of combination (#24) relative to Cage-PflAB.mrc gaussian (#4)
    59860 coordinates: 
    59861 Matrix rotation and translation 
    59862 0.97475676 -0.22232403 0.02052542 -23.12518483 
    59863 0.22250786 0.97490485 -0.00712606 -5.27372184 
    59864 -0.01842604 0.01151324 0.99976394 -69.38349145 
    59865 Axis 0.04170584 0.08715477 0.99532139 
    59866 Axis point -13.96754221 -89.20784370 0.00000000 
    59867 Rotation angle (degrees) 12.91242166 
    59868 Shift along axis -70.48295846 
    59869  
    59870 
    59871 > fitmap #24 inMap #4
    59872 
    59873 Fit molecule combination (#24) to map Cage-PflAB.mrc gaussian (#4) using 60311
    59874 atoms 
    59875 average map value = 0.0166, steps = 44 
    59876 shifted from previous position = 0.0384 
    59877 rotated from previous position = 0.0493 degrees 
    59878 atoms outside contour = 34392, contour level = 0.0013059 
    59879  
    59880 Position of combination (#24) relative to Cage-PflAB.mrc gaussian (#4)
    59881 coordinates: 
    59882 Matrix rotation and translation 
    59883 0.97472885 -0.22236547 0.02138398 -23.39716090 
    59884 0.22255966 0.97489289 -0.00714538 -5.30319048 
    59885 -0.01925820 0.01172402 0.99974580 -69.11523189 
    59886 Axis 0.04219684 0.09088635 0.99496688 
    59887 Axis point -15.02788372 -90.18317417 0.00000000 
    59888 Rotation angle (degrees) 12.91985606 
    59889 Shift along axis -70.23664080 
    59890  
    59891 
    59892 > fitmap #24 inMap #4
    59893 
    59894 Fit molecule combination (#24) to map Cage-PflAB.mrc gaussian (#4) using 60311
    59895 atoms 
    59896 average map value = 0.0166, steps = 44 
    59897 shifted from previous position = 0.0261 
    59898 rotated from previous position = 0.00945 degrees 
    59899 atoms outside contour = 34382, contour level = 0.0013059 
    59900  
    59901 Position of combination (#24) relative to Cage-PflAB.mrc gaussian (#4)
    59902 coordinates: 
    59903 Matrix rotation and translation 
    59904 0.97469836 -0.22249848 0.02139025 -23.34719639 
    59905 0.22269448 0.97486144 -0.00723487 -5.33061284 
    59906 -0.01924278 0.01181531 0.99974502 -69.14377033 
    59907 Axis 0.04257507 0.09081038 0.99495771 
    59908 Axis point -14.85561016 -89.79583919 0.00000000 
    59909 Rotation angle (degrees) 12.92788946 
    59910 Shift along axis -70.27321074 
    59911  
    59912 
    59913 > hide #!28 models
    59914 
    59915 > select subtract #24
    59916 
    59917 Nothing selected 
    59918 
    59919 > split #24
    59920 
    59921 Split combination (#24) into 26 models 
    59922 Chain information for combination A #24.1 
    59923 --- 
    59924 Chain | Description 
    59925 A | No description available 
    59926  
    59927 Chain information for combination B #24.2 
    59928 --- 
    59929 Chain | Description 
    59930 B | No description available 
    59931  
    59932 Chain information for combination C #24.3 
    59933 --- 
    59934 Chain | Description 
    59935 C | No description available 
    59936  
    59937 Chain information for combination D #24.4 
    59938 --- 
    59939 Chain | Description 
    59940 D | No description available 
    59941  
    59942 Chain information for combination E #24.5 
    59943 --- 
    59944 Chain | Description 
    59945 E | No description available 
    59946  
    59947 Chain information for combination F #24.6 
    59948 --- 
    59949 Chain | Description 
    59950 F | No description available 
    59951  
    59952 Chain information for combination G #24.7 
    59953 --- 
    59954 Chain | Description 
    59955 G | No description available 
    59956  
    59957 Chain information for combination H #24.8 
    59958 --- 
    59959 Chain | Description 
    59960 H | No description available 
    59961  
    59962 Chain information for combination I #24.9 
    59963 --- 
    59964 Chain | Description 
    59965 I | No description available 
    59966  
    59967 Chain information for combination J #24.10 
    59968 --- 
    59969 Chain | Description 
    59970 J | No description available 
    59971  
    59972 Chain information for combination K #24.11 
    59973 --- 
    59974 Chain | Description 
    59975 K | No description available 
    59976  
    59977 Chain information for combination L #24.12 
    59978 --- 
    59979 Chain | Description 
    59980 L | No description available 
    59981  
    59982 Chain information for combination M #24.13 
    59983 --- 
    59984 Chain | Description 
    59985 M | No description available 
    59986  
    59987 Chain information for combination N #24.14 
    59988 --- 
    59989 Chain | Description 
    59990 N | No description available 
    59991  
    59992 Chain information for combination O #24.15 
    59993 --- 
    59994 Chain | Description 
    59995 O | No description available 
    59996  
    59997 Chain information for combination P #24.16 
    59998 --- 
    59999 Chain | Description 
    60000 P | No description available 
    60001  
    60002 Chain information for combination Q #24.17 
    60003 --- 
    60004 Chain | Description 
    60005 Q | No description available 
    60006  
    60007 Chain information for combination R #24.18 
    60008 --- 
    60009 Chain | Description 
    60010 R | No description available 
    60011  
    60012 Chain information for combination S #24.19 
    60013 --- 
    60014 Chain | Description 
    60015 S | No description available 
    60016  
    60017 Chain information for combination T #24.20 
    60018 --- 
    60019 Chain | Description 
    60020 T | No description available 
    60021  
    60022 Chain information for combination U #24.21 
    60023 --- 
    60024 Chain | Description 
    60025 U | No description available 
    60026  
    60027 Chain information for combination V #24.22 
    60028 --- 
    60029 Chain | Description 
    60030 V | No description available 
    60031  
    60032 Chain information for combination W #24.23 
    60033 --- 
    60034 Chain | Description 
    60035 W | No description available 
    60036  
    60037 Chain information for combination X #24.24 
    60038 --- 
    60039 Chain | Description 
    60040 X | No description available 
    60041  
    60042 Chain information for combination Y #24.25 
    60043 --- 
    60044 Chain | Description 
    60045 Y | No description available 
    60046  
    60047 Chain information for combination Z #24.26 
    60048 --- 
    60049 Chain | Description 
    60050 Z | No description available 
    60051  
    60052 
    60053 > hide #!24.26 models
    60054 
    60055 > show #!24.26 models
    60056 
    60057 > hide #24.25 models
    60058 
    60059 > show #24.25 models
    60060 
    60061 > hide #24.23 models
    60062 
    60063 > show #24.23 models
    60064 
    60065 > hide #!24.20 models
    60066 
    60067 > show #!24.20 models
    60068 
    60069 > hide #24.19 models
    60070 
    60071 > hide #!24.18 models
    60072 
    60073 > hide #24.17 models
    60074 
    60075 > hide #24.16 models
    60076 
    60077 > show #24.16 models
    60078 
    60079 > hide #24.16 models
    60080 
    60081 > hide #24.15 models
    60082 
    60083 > hide #24.14 models
    60084 
    60085 > hide #24.13 models
    60086 
    60087 > show #24.13 models
    60088 
    60089 > hide #24.13 models
    60090 
    60091 > hide #24.12 models
    60092 
    60093 > show #24.12 models
    60094 
    60095 > hide #24.12 models
    60096 
    60097 > hide #24.11 models
    60098 
    60099 > hide #24.10 models
    60100 
    60101 > hide #24.9 models
    60102 
    60103 > hide #24.8 models
    60104 
    60105 > hide #24.7 models
    60106 
    60107 > hide #24.6 models
    60108 
    60109 > hide #24.5 models
    60110 
    60111 > hide #24.4 models
    60112 
    60113 > hide #24.3 models
    60114 
    60115 > hide #24.2 models
    60116 
    60117 > hide #24.1 models
    60118 
    60119 > select add #24.20
    60120 
    60121 5103 atoms, 5196 bonds, 1 pseudobond, 633 residues, 2 models selected 
    60122 
    60123 > select add #24.21
    60124 
    60125 6295 atoms, 6414 bonds, 1 pseudobond, 782 residues, 3 models selected 
    60126 
    60127 > select add #24.22
    60128 
    60129 11398 atoms, 11610 bonds, 2 pseudobonds, 1415 residues, 5 models selected 
    60130 
    60131 > select add #24.23
    60132 
    60133 12590 atoms, 12828 bonds, 2 pseudobonds, 1564 residues, 6 models selected 
    60134 
    60135 > select add #24.24
    60136 
    60137 17693 atoms, 18024 bonds, 3 pseudobonds, 2197 residues, 8 models selected 
    60138 
    60139 > select add #24.25
    60140 
    60141 18885 atoms, 19242 bonds, 3 pseudobonds, 2346 residues, 9 models selected 
    60142 
    60143 > select add #24.26
    60144 
    60145 23988 atoms, 24438 bonds, 4 pseudobonds, 2979 residues, 11 models selected 
    60146 
    60147 > save /Users/shoichi/Desktop/PflB_PflAn_JMB.pdb selectedOnly true
    60148 
    60149 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    60150 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    60151 > refinment/PflCD_Docking_model_Fig3/REDO/Models/Jack_models/PflB_PflAn_JMB.pdb"
    60152 
    60153 Summary of feedback from opening /Volumes/Lab Backup/Jun Liu Lab 2025/Project
    60154 files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    60155 refinment/PflCD_Docking_model_Fig3/REDO/Models/Jack_models/PflB_PflAn_JMB.pdb 
    60156 --- 
    60157 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    60158 Start residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1
    60159 42 
    60160 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    60161 8 
    60162 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    60163 1 7 
    60164 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    60165 1 3 
    60166 86 messages similar to the above omitted 
    60167  
    60168 Chain information for PflB_PflAn_JMB.pdb 
    60169 --- 
    60170 Chain | Description 
    60171 26.1/T 26.3/V 26.5/X 26.7/Z | No description available 
    60172 26.2/U 26.4/W 26.6/Y | No description available 
    60173  
    60174 
    60175 > select clear
    60176 
    60177 > hide #!24 models
    60178 
    60179 > show #!28 models
    60180 
    60181 > hide #28.2 models
    60182 
    60183 > show #28.2 models
    60184 
    60185 > split #28
    60186 
    60187 Split Final-Cage-PflCD_JMB_Modified.pdb (#28.1) into 9 models 
    60188 Split Final-Cage-PflCD_JMB_Modified.pdb (#28.2) into 9 models 
    60189 Split Final-Cage-PflCD_JMB_Modified.pdb (#28.3) into 5 models 
    60190 Chain information for Final-Cage-PflCD_JMB_Modified.pdb A #28.1.1 
    60191 --- 
    60192 Chain | Description 
    60193 A | No description available 
    60194  
    60195 Chain information for Final-Cage-PflCD_JMB_Modified.pdb B #28.1.2 
    60196 --- 
    60197 Chain | Description 
    60198 B | No description available 
    60199  
    60200 Chain information for Final-Cage-PflCD_JMB_Modified.pdb J #28.1.3 
    60201 --- 
    60202 Chain | Description 
    60203 J | No description available 
    60204  
    60205 Chain information for Final-Cage-PflCD_JMB_Modified.pdb K #28.1.4 
    60206 --- 
    60207 Chain | Description 
    60208 K | No description available 
    60209  
    60210 Chain information for Final-Cage-PflCD_JMB_Modified.pdb L #28.1.5 
    60211 --- 
    60212 Chain | Description 
    60213 L | No description available 
    60214  
    60215 Chain information for Final-Cage-PflCD_JMB_Modified.pdb V #28.1.6 
    60216 --- 
    60217 Chain | Description 
    60218 V | No description available 
    60219  
    60220 Chain information for Final-Cage-PflCD_JMB_Modified.pdb W #28.1.7 
    60221 --- 
    60222 Chain | Description 
    60223 W | No description available 
    60224  
    60225 Chain information for Final-Cage-PflCD_JMB_Modified.pdb X #28.1.8 
    60226 --- 
    60227 Chain | Description 
    60228 X | No description available 
    60229  
    60230 Chain information for Final-Cage-PflCD_JMB_Modified.pdb c #28.1.9 
    60231 --- 
    60232 Chain | Description 
    60233 c | No description available 
    60234  
    60235 Chain information for Final-Cage-PflCD_JMB_Modified.pdb A #28.2.1 
    60236 --- 
    60237 Chain | Description 
    60238 A | No description available 
    60239  
    60240 Chain information for Final-Cage-PflCD_JMB_Modified.pdb B #28.2.2 
    60241 --- 
    60242 Chain | Description 
    60243 B | No description available 
    60244  
    60245 Chain information for Final-Cage-PflCD_JMB_Modified.pdb J #28.2.3 
    60246 --- 
    60247 Chain | Description 
    60248 J | No description available 
    60249  
    60250 Chain information for Final-Cage-PflCD_JMB_Modified.pdb K #28.2.4 
    60251 --- 
    60252 Chain | Description 
    60253 K | No description available 
    60254  
    60255 Chain information for Final-Cage-PflCD_JMB_Modified.pdb L #28.2.5 
    60256 --- 
    60257 Chain | Description 
    60258 L | No description available 
    60259  
    60260 Chain information for Final-Cage-PflCD_JMB_Modified.pdb V #28.2.6 
    60261 --- 
    60262 Chain | Description 
    60263 V | No description available 
    60264  
    60265 Chain information for Final-Cage-PflCD_JMB_Modified.pdb W #28.2.7 
    60266 --- 
    60267 Chain | Description 
    60268 W | No description available 
    60269  
    60270 Chain information for Final-Cage-PflCD_JMB_Modified.pdb X #28.2.8 
    60271 --- 
    60272 Chain | Description 
    60273 X | No description available 
    60274  
    60275 Chain information for Final-Cage-PflCD_JMB_Modified.pdb c #28.2.9 
    60276 --- 
    60277 Chain | Description 
    60278 c | No description available 
    60279  
    60280 Chain information for Final-Cage-PflCD_JMB_Modified.pdb B #28.3.1 
    60281 --- 
    60282 Chain | Description 
    60283 B | No description available 
    60284  
    60285 Chain information for Final-Cage-PflCD_JMB_Modified.pdb V #28.3.2 
    60286 --- 
    60287 Chain | Description 
    60288 V | No description available 
    60289  
    60290 Chain information for Final-Cage-PflCD_JMB_Modified.pdb W #28.3.3 
    60291 --- 
    60292 Chain | Description 
    60293 W | No description available 
    60294  
    60295 Chain information for Final-Cage-PflCD_JMB_Modified.pdb X #28.3.4 
    60296 --- 
    60297 Chain | Description 
    60298 X | No description available 
    60299  
    60300 Chain information for Final-Cage-PflCD_JMB_Modified.pdb c #28.3.5 
    60301 --- 
    60302 Chain | Description 
    60303 c | No description available 
    60304  
    60305 
    60306 > hide #28.1.2 models
    60307 
    60308 > show #28.1.2 models
    60309 
    60310 > hide #28.1.9 models
    60311 
    60312 > show #28.1.9 models
    60313 
    60314 > color #28.1.9 #7b80ffff
    60315 
    60316 > color #28.2.9 #7b80ffff
    60317 
    60318 > color #28.3.9 #7b80ffff
    60319 
    60320 > hide #28.3.5 models
    60321 
    60322 > show #28.3.5 models
    60323 
    60324 > color #28.3.5 #7b80ffff
    60325 
    60326 > hide #28.1.3 models
    60327 
    60328 > show #28.1.3 models
    60329 
    60330 > hide #!26.1 models
    60331 
    60332 > show #!26.1 models
    60333 
    60334 > hide #26.1.1 models
    60335 
    60336 > show #26.1.1 models
    60337 
    60338 > hide #26.1.1 models
    60339 
    60340 > show #26.1.1 models
    60341 
    60342 > hide #!26.7 models
    60343 
    60344 > show #!26.7 models
    60345 
    60346 > hide #26.6 models
    60347 
    60348 > show #26.6 models
    60349 
    60350 > color #26.6 #ca4949ff models
    60351 
    60352 > color #26.4 #ca4949ff models
    60353 
    60354 > color #26.2 #ca4949ff models
    60355 
    60356 > color #26.3 magenta models
    60357 
    60358 > color #26.7 magenta models
    60359 
    60360 > color #26.5 magenta models
    60361 
    60362 > color #26.1 magenta models
    60363 
    60364 > color #28.1.1 #a7c5d2ff models
    60365 
    60366 > select ~sel & ##selected
    60367 
    60368 Nothing selected 
    60369 
    60370 > select ~sel & ##selected
    60371 
    60372 Nothing selected 
    60373 
    60374 > select ~sel & ##selected
    60375 
    60376 Nothing selected 
    60377 
    60378 > select ~sel & ##selected
    60379 
    60380 Nothing selected 
    60381 
    60382 > color #28.2.1 #a7c5d2ff models
    60383 
    60384 > color #28.3.1 #a7c5d2ff models
    60385 
    60386 > color #28.2.2 #a7c5d2ff models
    60387 
    60388 > color #28.1.2 #a7c5d2ff models
    60389 
    60390 > hide #!4 models
    60391 
    60392 > color #28.1.3 #0b6dffff
    60393 
    60394 > hide #28.1.2 models
    60395 
    60396 > show #28.1.2 models
    60397 
    60398 > color #28.1.4 #0b6dffff
    60399 
    60400 > color #28.2.4 #0b6dffff
    60401 
    60402 > color #28.3.4 #0b6dffff
    60403 
    60404 > color #28.3.3 #0b6dffff
    60405 
    60406 > hide #28.3.3 models
    60407 
    60408 > hide #28.1.3 models
    60409 
    60410 > color #28.2.6 #0b6dffff
    60411 
    60412 > color #28.2.7 #0b6dffff
    60413 
    60414 > hide #28.2.6 models
    60415 
    60416 > hide #28.1.4 models
    60417 
    60418 > show #28.1.4 models
    60419 
    60420 > hide #28.3.4 models
    60421 
    60422 > show #28.3.3 models
    60423 
    60424 > show #28.3.4 models
    60425 
    60426 > hide #28.3.4 models
    60427 
    60428 > color #28.3.4 #7b80ffff
    60429 
    60430 > show #28.3.4 models
    60431 
    60432 > color #28.3.4 #adffc1ff
    60433 
    60434 > show #28.1.3 models
    60435 
    60436 > hide #28.1.3 models
    60437 
    60438 > show #28.1.3 models
    60439 
    60440 > color #28.1.3 #20e0ffff
    60441 
    60442 > hide #28.1.7 models
    60443 
    60444 > show #28.1.7 models
    60445 
    60446 > hide #28.1.7 models
    60447 
    60448 > show #28.1.7 models
    60449 
    60450 > color #28.1.7 #20e0ffff
    60451 
    60452 > color #28.1.6 #20e0ffff
    60453 
    60454 > color #28.1.7 #0b6dffff
    60455 
    60456 > hide #!28.3 models
    60457 
    60458 > show #!28.3 models
    60459 
    60460 > hide #28.2.3 models
    60461 
    60462 > show #28.2.3 models
    60463 
    60464 > color #28.2.3 #20e0ffff
    60465 
    60466 > show #28.2.6 models
    60467 
    60468 > hide #28.2.6 models
    60469 
    60470 > show #28.2.6 models
    60471 
    60472 > color #28.2.6 #20e0ffff
    60473 
    60474 > hide #28.3.2 models
    60475 
    60476 > show #28.3.2 models
    60477 
    60478 > color #28.3.2 #20e0ffff
    60479 
    60480 > hide #28.1.1 models
    60481 
    60482 > show #28.1.1 models
    60483 
    60484 > hide #28.1.1 models
    60485 
    60486 > show #28.1.1 models
    60487 
    60488 > split #28.1.1
    60489 
    60490 Did not split Final-Cage-PflCD_JMB_Modified.pdb A, has only one piece 
    60491 
    60492 > show #!3 models
    60493 
    60494 > show #!4 models
    60495 
    60496 > color #3-4 #c0c0c080 models
    60497 
    60498 > hide #!3 models
    60499 
    60500 > select add #4
    60501 
    60502 2 models selected 
    60503 
    60504 > hide #!26 models
    60505 
    60506 > hide #!28 models
    60507 
    60508 > hide #!4 models
    60509 
    60510 > select subtract #4
    60511 
    60512 Nothing selected 
    60513 
    60514 > show #!1 models
    60515 
    60516 > show #!2 models
    60517 
    60518 > save /Users/shoichi/Desktop/Docking_models_07232025.cxs includeMaps true
    60519 
    60520 > ui tool show "Segment Map"
    60521 
    60522 The cached device pixel ratio value was stale on window expose. Please file a
    60523 QTBUG which explains how to reproduce. 
    60524 
    60525 Segmenting PflCD.mrc, density threshold 0.007034 
    60526 Only showing 60 of 726 regions. 
    60527 Showing 60 of 726 region surfaces 
    60528 15043 watershed regions, grouped to 726 regions 
    60529 Showing PflCD.seg - 726 regions, 60 surfaces 
    60530 
    60531 > hide #!27 models
    60532 
    60533 > show #!28 models
    60534 
    60535 > show #!26 models
    60536 
    60537 > hide #!2 models
    60538 
    60539 > hide #!1 models
    60540 
    60541 > show #!1 models
    60542 
    60543 > show #!27 models
    60544 
    60545 > select #27.5
    60546 
    60547 1 model selected 
    60548 
    60549 > select add #27.4
    60550 
    60551 2 models selected 
    60552 
    60553 > select add #27.6
    60554 
    60555 3 models selected 
    60556 
    60557 > hide #!1 models
    60558 
    60559 Grouped 3 regions 
    60560 
    60561 The cached device pixel ratio value was stale on window expose. Please file a
    60562 QTBUG which explains how to reproduce. 
    60563 
    60564 Opened PflCD_imasked as #29, grid size 200,200,200, pixel 2.14, shown at step
    60565 1, values float32 
    60566 
    60567 The cached device pixel ratio value was stale on window expose. Please file a
    60568 QTBUG which explains how to reproduce. 
    60569 
    60570 > save /Users/shoichi/Desktop/PflC-polished.mrc models #29
    60571 
    60572 Segmenting Cage-PflAB.mrc, density threshold 0.007030 
    60573 Only showing 60 of 697 regions. 
    60574 Showing 60 of 697 region surfaces 
    60575 16352 watershed regions, grouped to 697 regions 
    60576 Showing Cage-PflAB.seg - 697 regions, 60 surfaces 
    60577 
    60578 > select #27.20
    60579 
    60580 1 model selected 
    60581 Ungrouped to 2 regions 
    60582 Ungrouped to 12 regions, but did not show all surfaces, see Options 
    60583 Segmenting Cage-PflAB.mrc, density threshold 0.007030 
    60584 Only showing 60 of 697 regions. 
    60585 Showing 60 of 697 region surfaces 
    60586 16352 watershed regions, grouped to 697 regions 
    60587 Showing Cage-PflAB.seg - 697 regions, 60 surfaces 
    60588 Segmenting Cage-PflAB.mrc, density threshold 0.007030 
    60589 Showing 697 region surfaces 
    60590 16352 watershed regions, grouped to 697 regions 
    60591 Showing Cage-PflAB.seg - 697 regions, 697 surfaces 
    60592 
    60593 > select #27.20
    60594 
    60595 1 model selected 
    60596 Ungrouped to 2 regions 
    60597 
    60598 > select #27.698
    60599 
    60600 1 model selected 
    60601 Ungrouped to 9 regions 
    60602 
    60603 > select #27.706
    60604 
    60605 1 model selected 
    60606 
    60607 > select clear
    60608 
    60609 > select #27.7
    60610 
    60611 1 model selected 
    60612 Ungrouped to 2 regions 
    60613 
    60614 > select #27.708
    60615 
    60616 1 model selected 
    60617 
    60618 > select add #27.706
    60619 
    60620 2 models selected 
    60621 
    60622 > select clear
    60623 
    60624 > select #27.708
    60625 
    60626 1 model selected 
    60627 Ungrouped to 5 regions 
    60628 Ungrouped to 7 regions 
    60629 Ungrouped to 0 regions 
    60630 
    60631 > select #27.713
    60632 
    60633 1 model selected 
    60634 
    60635 > select clear
    60636 
    60637 > select #27.706
    60638 
    60639 1 model selected 
    60640 Opened Cage-PflAB_imasked as #30, grid size 200,200,200, pixel 2.14, shown at
    60641 step 1, values float32 
    60642 
    60643 The cached device pixel ratio value was stale on window expose. Please file a
    60644 QTBUG which explains how to reproduce. 
    60645 
    60646 > save /Users/shoichi/Desktop/Cage-polished.mrc models #30
    60647 
    60648 > hide #!27 models
    60649 
    60650 > select add #27
    60651 
    60652 717 models selected 
    60653 
    60654 > select subtract #27
    60655 
    60656 Nothing selected 
    60657 
    60658 > hide #!26 models
    60659 
    60660 > hide #!28 models
    60661 
    60662 > volume gaussian #29 sDev 3
    60663 
    60664 Opened PflC-polished.mrc gaussian as #31, grid size 200,200,200, pixel 2.14,
    60665 shown at step 1, values float32 
    60666 
    60667 > volume gaussian #30 sDev 3
    60668 
    60669 Opened Cage-polished.mrc gaussian as #32, grid size 200,200,200, pixel 2.14,
    60670 shown at step 1, values float32 
    60671 
    60672 > volume #31 level 0.001811
    60673 
    60674 > volume #31 level 0.001355
    60675 
    60676 > volume #32 level 0.00135
    60677 
    60678 > hide #!32 models
    60679 
    60680 > ui tool show "Map Eraser"
    60681 
    60682 > volume erase #31 center 310.54,252.16,359.07 radius 202.11 outside true
    60683 
    60684 > volume erase #31 center 86.433,242,485.85 radius 202.11
    60685 
    60686 > volume erase #31 center 495.25,235.77,181.43 radius 202.11
    60687 
    60688 > volume erase #31 center 451.37,446.66,217.02 radius 202.11
    60689 
    60690 > volume erase #31 center 466.42,111.27,194.5 radius 202.11
    60691 
    60692 > volume erase #31 center 210.09,295.03,81.331 radius 202.11
    60693 
    60694 > volume erase #31 center 481.97,351.66,535.14 radius 202.11
    60695 
    60696 > volume erase #31 center 488.2,156.87,534.3 radius 202.11
    60697 
    60698 > hide #!31 models
    60699 
    60700 > show #!32 models
    60701 
    60702 > volume erase #32 center 23.429,216.1,398.49 radius 214
    60703 
    60704 > volume erase #32 center 27.142,270.43,151.6 radius 214
    60705 
    60706 > volume erase #32 center 4.6577,123.48,180.34 radius 214
    60707 
    60708 > volume erase #32 center 19.934,117.11,34.421 radius 214
    60709 
    60710 > volume erase #32 center 60.331,307.21,2.3713 radius 214
    60711 
    60712 > volume erase #32 center 303.24,77.202,533.39 radius 214
    60713 
    60714 > volume erase #32 center 260.38,349.57,533.45 radius 214
    60715 
    60716 > volume erase #32 center 572.58,249.27,290.61 radius 214
    60717 
    60718 > volume erase #32 center 524.32,27.885,356.21 radius 214
    60719 
    60720 > volume erase #32 center 542.87,452.78,219.12 radius 214
    60721 
    60722 > volume erase #32 center 482.13,518.12,8.8554 radius 214
    60723 
    60724 > close #33
    60725 
    60726 > volume erase #32 center 174.93,578.32,93.856 radius 214
    60727 
    60728 > volume erase #32 center 417.68,515.64,393.86 radius 214
    60729 
    60730 > volume erase #32 center 177.66,186.34,-111.3 radius 214
    60731 
    60732 > hide #33 models
    60733 
    60734 > show #!31 models
    60735 
    60736 > surface dust #31-32 size 58.49
    60737 
    60738 > hide #!32 models
    60739 
    60740 > show #33 models
    60741 
    60742 > hide #33 models
    60743 
    60744 > show #33 models
    60745 
    60746 > volume erase #31 center 292.19,164.98,348.83 radius 13.054
    60747 
    60748 > close #33
    60749 
    60750 > show #!32 models
    60751 
    60752 > hide #!32 models
    60753 
    60754 > volume erase #31 center 273.22,397.73,322.99 radius 13.696
    60755 
    60756 > color #31-32 #c0c0c080 models
    60757 
    60758 > hide #!31 models
    60759 
    60760 > show #!31 models
    60761 
    60762 > show #!32 models
    60763 
    60764 > show #!29 models
    60765 
    60766 > hide #!29 models
    60767 
    60768 > show #!29 models
    60769 
    60770 > hide #!29 models
    60771 
    60772 > show #!28 models
    60773 
    60774 > show #!27 models
    60775 
    60776 > hide #!27 models
    60777 
    60778 > show #!29 models
    60779 
    60780 > hide #!29 models
    60781 
    60782 > show #!26 models
    60783 
    60784 > save /Users/shoichi/Desktop/Docking_models_07232025.cxs includeMaps true
    60785 
    60786 Drag select of 179 residues 
    60787 
    60788 > hide #!26 models
    60789 
    60790 > show #!26 models
    60791 
    60792 > select add #26
    60793 
    60794 23988 atoms, 24438 bonds, 4 pseudobonds, 2979 residues, 12 models selected 
    60795 
    60796 > select add #28
    60797 
    60798 67510 atoms, 68810 bonds, 4 pseudobonds, 8272 residues, 39 models selected 
    60799 
    60800 > select add #31
    60801 
    60802 67510 atoms, 68810 bonds, 4 pseudobonds, 8272 residues, 41 models selected 
    60803 
    60804 > select subtract #31
    60805 
    60806 67510 atoms, 68810 bonds, 4 pseudobonds, 8272 residues, 39 models selected 
    60807 
    60808 > select add #31
    60809 
    60810 67510 atoms, 68810 bonds, 4 pseudobonds, 8272 residues, 41 models selected 
    60811 
    60812 > select subtract #31
    60813 
    60814 67510 atoms, 68810 bonds, 4 pseudobonds, 8272 residues, 39 models selected 
    60815 
    60816 > show sel surfaces
    60817 
    60818 > select clear
    60819 
    60820 Drag select of PflB_PflAn_JMB.pdb_T SES surface, 217184 of 558182 triangles,
    60821 226 residues 
    60822 
    60823 > hide sel surfaces
    60824 
    60825 > hide sel cartoons
    60826 
    60827 > show sel cartoons
    60828 
    60829 > hide sel cartoons
    60830 
    60831 Drag select of PflB_PflAn_JMB.pdb_T SES surface, 11215 of 558182 triangles, 13
    60832 residues 
    60833 
    60834 > hide sel surfaces
    60835 
    60836 > hide sel cartoons
    60837 
    60838 Drag select of PflB_PflAn_JMB.pdb_Z SES surface, 239671 of 558246 triangles,
    60839 304 residues, 1 pseudobonds, 32 Cage-polished.mrc gaussian 
    60840 
    60841 > hide sel cartoons
    60842 
    60843 > hide sel surfaces
    60844 
    60845 > hide sel cartoons
    60846 
    60847 > select add #26
    60848 
    60849 23988 atoms, 24438 bonds, 4 pseudobonds, 2979 residues, 14 models selected 
    60850 
    60851 > select add #28
    60852 
    60853 67510 atoms, 68810 bonds, 4 pseudobonds, 8272 residues, 46 models selected 
    60854 
    60855 > hide sel cartoons
    60856 
    60857 [Repeated 1 time(s)]
    60858 
    60859 > select clear
    60860 
    60861 > save /Users/shoichi/Desktop/Docking_models_07232025.cxs includeMaps true
    60862 
    60863 Drag select of PflB_PflAn_JMB.pdb_Z SES surface, 35717 of 558246 triangles, 32
    60864 Cage-polished.mrc gaussian 
    60865 
    60866 > select subtract #32
    60867 
    60868 1 model selected 
    60869 
    60870 > hide #!26.1-7#!28.1.1-9#!28.2.1-9#!28.3.1-5 surfaces
    60871 
    60872 > show #!26.1-7#!28.1.1-9#!28.2.1-9#!28.3.1-5 surfaces
    60873 
    60874 > select clear
    60875 
    60876 Drag select of PflB_PflAn_JMB.pdb_Z SES surface, 281564 of 558246 triangles,
    60877 32 Cage-polished.mrc gaussian 
    60878 
    60879 > select clear
    60880 
    60881 Drag select of PflB_PflAn_JMB.pdb_Y SES surface, 1429 of 176284 triangles,
    60882 PflB_PflAn_JMB.pdb_Z SES surface, 312627 of 558246 triangles, 31 PflC-
    60883 polished.mrc gaussian , 32 Cage-polished.mrc gaussian 
    60884 
    60885 > select #31
    60886 
    60887 2 models selected 
    60888 Drag select of PflB_PflAn_JMB.pdb_Z SES surface, 164687 of 558246 triangles 
    60889 
    60890 > select add #26
    60891 
    60892 23988 atoms, 24438 bonds, 4 pseudobonds, 2979 residues, 15 models selected 
    60893 
    60894 > select add #28
    60895 
    60896 67510 atoms, 68810 bonds, 4 pseudobonds, 8272 residues, 48 models selected 
    60897 
    60898 > hide sel surfaces
    60899 
    60900 > show sel cartoons
    60901 
    60902 > select clear
    60903 
    60904 Drag select of 382 residues, 1 pseudobonds, 32 Cage-polished.mrc gaussian 
    60905 
    60906 > select add #26.6
    60907 
    60908 4262 atoms, 1218 bonds, 1 pseudobond, 529 residues, 5 models selected 
    60909 
    60910 > select subtract #26.6
    60911 
    60912 3070 atoms, 1 pseudobond, 380 residues, 4 models selected 
    60913 
    60914 > hide sel cartoons
    60915 
    60916 Drag select of 334 residues, 32 Cage-polished.mrc gaussian 
    60917 
    60918 > hide sel cartoons
    60919 
    60920 > hide #!28 models
    60921 
    60922 > hide #!31 models
    60923 
    60924 > hide #!32 models
    60925 
    60926 > select add #26
    60927 
    60928 23988 atoms, 24438 bonds, 4 pseudobonds, 2979 residues, 14 models selected 
    60929 
    60930 > select subtract #26
    60931 
    60932 7 models selected 
    60933 Drag select of 2265 residues, 3 pseudobonds 
    60934 
    60935 > save /Users/shoichi/Desktop/Cropped_PflAB_Fig3.pdb selectedOnly true
    60936 
    60937 > open /Users/shoichi/Desktop/Cropped_PflAB_Fig3.pdb
    60938 
    60939 Summary of feedback from opening /Users/shoichi/Desktop/Cropped_PflAB_Fig3.pdb 
    60940 --- 
    60941 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    60942 Start residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1
    60943 42 
    60944 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    60945 8 
    60946 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    60947 1 7 
    60948 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    60949 1 3 
    60950 86 messages similar to the above omitted 
    60951  
    60952 Chain information for Cropped_PflAB_Fig3.pdb 
    60953 --- 
    60954 Chain | Description 
    60955 34.1/T | No description available 
    60956 34.2/U 34.4/W 34.6/Y | No description available 
    60957 34.3/V 34.5/X | No description available 
    60958 34.7/Z | No description available 
    60959  
    60960 
    60961 The cached device pixel ratio value was stale on window expose. Please file a
    60962 QTBUG which explains how to reproduce. 
    60963 
    60964 > select clear
    60965 
    60966 > hide #!26 models
    60967 
    60968 > hide #!34.1 models
    60969 
    60970 > show #!34.1 models
    60971 
    60972 > hide #34.2 models
    60973 
    60974 > hide #!34.3 models
    60975 
    60976 > show #!34.3 models
    60977 
    60978 > hide #34.4 models
    60979 
    60980 > hide #!34.5 models
    60981 
    60982 > show #!34.5 models
    60983 
    60984 > hide #34.6 models
    60985 
    60986 > color #34.1 magenta models
    60987 
    60988 > color #34.3 magenta models
    60989 
    60990 > color #34.5 magenta models
    60991 
    60992 > color #34.7 magenta models
    60993 
    60994 > color #34.2 #ca4949ff models
    60995 
    60996 > show #34.2 models
    60997 
    60998 > show #34.4 models
    60999 
    61000 > show #34.6 models
    61001 
    61002 > color #34.4 #ca4949ff models
    61003 
    61004 > color #34.6 #ca4949ff models
    61005 
    61006 > select add #34
    61007 
    61008 18239 atoms, 18574 bonds, 12 pseudobonds, 2265 residues, 12 models selected 
    61009 
    61010 > show sel surfaces
    61011 
    61012 > show #!31 models
    61013 
    61014 > show #!32 models
    61015 
    61016 > show #25 models
    61017 
    61018 > select add #25
    61019 
    61020 61761 atoms, 62946 bonds, 12 pseudobonds, 7558 residues, 20 models selected 
    61021 
    61022 > show sel surfaces
    61023 
    61024 > select clear
    61025 
    61026 > hide #!25 models
    61027 
    61028 > show #!28 models
    61029 
    61030 > select add #28
    61031 
    61032 43522 atoms, 44372 bonds, 5293 residues, 27 models selected 
    61033 
    61034 > show sel surfaces
    61035 
    61036 > select clear
    61037 
    61038 > view orient
    61039 
    61040 > turn x 90
    61041 
    61042 [Repeated 2 time(s)]
    61043 
    61044 > turn y 90
    61045 
    61046 [Repeated 2 time(s)]
    61047 
    61048 > select add #28
    61049 
    61050 43522 atoms, 44372 bonds, 5293 residues, 27 models selected 
    61051 
    61052 > hide sel cartoons
    61053 
    61054 > select clear
    61055 
    61056 > save /Users/shoichi/Desktop/Docking_models_07232025.cxs includeMaps true
    61057 
    61058 [Repeated 1 time(s)]
    61059 
    61060 ——— End of log from Wed Jul 23 17:25:02 2025 ———
    61061 
    61062 opened ChimeraX session 
    61063 Showing Cage-PflAB.seg - 716 regions, 716 surfaces 
    61064 
    61065 > close session
    61066 
    61067 > open /Users/shoichi/Desktop/Original-map-deposit/L0.12-Wild-
    61068 > type_EMD_45507.mrc
    61069 
    61070 Opened L0.12-Wild-type_EMD_45507.mrc as #1, grid size 250,250,250, pixel 4.3,
    61071 shown at level 0.262, step 1, values float32 
    61072 
    61073 > volume #1 level 0.01067
    61074 
    61075 > ui tool show "Segment Map"
    61076 
    61077 Segmenting L0.12-Wild-type_EMD_45507.mrc, density threshold 0.010668 
    61078 Showing 1281 region surfaces 
    61079 12116 watershed regions, grouped to 1281 regions 
    61080 Showing L0.12-Wild-type_EMD_45507.seg - 1281 regions, 1281 surfaces 
    61081 
    61082 > select #2.18
    61083 
    61084 1 model selected 
    61085 
    61086 > select add #2.73
    61087 
    61088 2 models selected 
    61089 
    61090 > select add #2.37
    61091 
    61092 3 models selected 
    61093 
    61094 > select add #2.20
    61095 
    61096 4 models selected 
    61097 
    61098 > select add #2.16
    61099 
    61100 5 models selected 
    61101 
    61102 > select add #2.42
    61103 
    61104 6 models selected 
    61105 
    61106 > select add #2.88
    61107 
    61108 7 models selected 
    61109 
    61110 > select add #2.19
    61111 
    61112 8 models selected 
    61113 
    61114 > select add #2.38
    61115 
    61116 9 models selected 
    61117 
    61118 > select add #2.232
    61119 
    61120 10 models selected 
    61121 
    61122 > select add #2.209
    61123 
    61124 11 models selected 
    61125 
    61126 > select add #2.17
    61127 
    61128 12 models selected 
    61129 
    61130 > select add #2.65
    61131 
    61132 13 models selected 
    61133 
    61134 > select add #2.58
    61135 
    61136 14 models selected 
    61137 
    61138 > select add #2.21
    61139 
    61140 15 models selected 
    61141 
    61142 > select add #2.32
    61143 
    61144 16 models selected 
    61145 
    61146 > select add #2.95
    61147 
    61148 17 models selected 
    61149 
    61150 > select add #2.336
    61151 
    61152 18 models selected 
    61153 
    61154 > select add #2.29
    61155 
    61156 19 models selected 
    61157 
    61158 > select add #2.60
    61159 
    61160 20 models selected 
    61161 
    61162 > select add #2.51
    61163 
    61164 21 models selected 
    61165 
    61166 > select add #2.34
    61167 
    61168 22 models selected 
    61169 
    61170 > select add #2.127
    61171 
    61172 23 models selected 
    61173 
    61174 > select add #2.472
    61175 
    61176 24 models selected 
    61177 
    61178 > select add #2.4
    61179 
    61180 25 models selected 
    61181 
    61182 > select add #2.79
    61183 
    61184 26 models selected 
    61185 
    61186 > select add #2.461
    61187 
    61188 27 models selected 
    61189 
    61190 > select add #2.235
    61191 
    61192 28 models selected 
    61193 
    61194 > select add #2.216
    61195 
    61196 29 models selected 
    61197 
    61198 > select add #2.693
    61199 
    61200 30 models selected 
    61201 
    61202 > select add #2.52
    61203 
    61204 31 models selected 
    61205 
    61206 > select add #2.25
    61207 
    61208 32 models selected 
    61209 Grouped 32 regions 
    61210 
    61211 > select add #2.121
    61212 
    61213 2 models selected 
    61214 
    61215 > select add #2.663
    61216 
    61217 3 models selected 
    61218 
    61219 > select add #2.244
    61220 
    61221 4 models selected 
    61222 
    61223 > select add #2.185
    61224 
    61225 5 models selected 
    61226 
    61227 > select subtract #2.185
    61228 
    61229 4 models selected 
    61230 
    61231 > select add #2.68
    61232 
    61233 5 models selected 
    61234 Grouped 5 regions 
    61235 
    61236 > select add #2.185
    61237 
    61238 2 models selected 
    61239 
    61240 > select add #2.379
    61241 
    61242 3 models selected 
    61243 
    61244 > select add #2.157
    61245 
    61246 4 models selected 
    61247 
    61248 > select add #2.128
    61249 
    61250 5 models selected 
    61251 
    61252 > select add #2.901
    61253 
    61254 6 models selected 
    61255 
    61256 > select add #2.439
    61257 
    61258 7 models selected 
    61259 
    61260 > select add #2.1219
    61261 
    61262 8 models selected 
    61263 
    61264 > select subtract #2.1219
    61265 
    61266 7 models selected 
    61267 
    61268 > select add #2.137
    61269 
    61270 8 models selected 
    61271 
    61272 > select add #2.226
    61273 
    61274 9 models selected 
    61275 Segmenting L0.12-Wild-type_EMD_45507.mrc, density threshold 0.010668 
    61276 Showing 1281 region surfaces 
    61277 12116 watershed regions, grouped to 1281 regions 
    61278 Showing L0.12-Wild-type_EMD_45507.seg - 1281 regions, 1281 surfaces 
    61279 
    61280 > select #2.29
    61281 
    61282 1 model selected 
    61283 
    61284 > select add #2.336
    61285 
    61286 2 models selected 
    61287 
    61288 > select add #2.95
    61289 
    61290 3 models selected 
    61291 
    61292 > select add #2.32
    61293 
    61294 4 models selected 
    61295 
    61296 > select add #2.21
    61297 
    61298 5 models selected 
    61299 
    61300 > select add #2.58
    61301 
    61302 6 models selected 
    61303 
    61304 > select add #2.65
    61305 
    61306 7 models selected 
    61307 
    61308 > select add #2.17
    61309 
    61310 8 models selected 
    61311 
    61312 > select add #2.209
    61313 
    61314 9 models selected 
    61315 
    61316 > select add #2.232
    61317 
    61318 10 models selected 
    61319 
    61320 > select add #2.38
    61321 
    61322 11 models selected 
    61323 
    61324 > select add #2.19
    61325 
    61326 12 models selected 
    61327 
    61328 > select add #2.88
    61329 
    61330 13 models selected 
    61331 
    61332 > select add #2.744
    61333 
    61334 14 models selected 
    61335 
    61336 > select add #2.42
    61337 
    61338 15 models selected 
    61339 
    61340 > select add #2.61
    61341 
    61342 16 models selected 
    61343 
    61344 > select add #2.16
    61345 
    61346 17 models selected 
    61347 
    61348 > select add #2.90
    61349 
    61350 18 models selected 
    61351 
    61352 > select add #2.80
    61353 
    61354 19 models selected 
    61355 
    61356 The cached device pixel ratio value was stale on window expose. Please file a
    61357 QTBUG which explains how to reproduce. 
    61358 
    61359 > select add #2.240
    61360 
    61361 20 models selected 
    61362 
    61363 > select add #2.168
    61364 
    61365 21 models selected 
    61366 
    61367 > select add #2.377
    61368 
    61369 22 models selected 
    61370 
    61371 > select add #2.137
    61372 
    61373 23 models selected 
    61374 
    61375 > select add #2.226
    61376 
    61377 24 models selected 
    61378 
    61379 > select add #2.128
    61380 
    61381 25 models selected 
    61382 
    61383 > select add #2.439
    61384 
    61385 26 models selected 
    61386 
    61387 > select add #2.157
    61388 
    61389 27 models selected 
    61390 
    61391 > select add #2.68
    61392 
    61393 28 models selected 
    61394 
    61395 > select add #2.185
    61396 
    61397 29 models selected 
    61398 
    61399 > select subtract #2.185
    61400 
    61401 28 models selected 
    61402 
    61403 > select add #2.60
    61404 
    61405 29 models selected 
    61406 
    61407 > select add #2.185
    61408 
    61409 30 models selected 
    61410 
    61411 > select add #2.379
    61412 
    61413 31 models selected 
    61414 
    61415 > select add #2.51
    61416 
    61417 32 models selected 
    61418 
    61419 > select add #2.127
    61420 
    61421 33 models selected 
    61422 
    61423 > select add #2.472
    61424 
    61425 34 models selected 
    61426 
    61427 > select add #2.34
    61428 
    61429 35 models selected 
    61430 
    61431 > select add #2.121
    61432 
    61433 36 models selected 
    61434 
    61435 > select add #2.4
    61436 
    61437 37 models selected 
    61438 
    61439 > select add #2.79
    61440 
    61441 38 models selected 
    61442 
    61443 > select add #2.216
    61444 
    61445 39 models selected 
    61446 
    61447 > select add #2.235
    61448 
    61449 40 models selected 
    61450 
    61451 > select subtract #2.216
    61452 
    61453 39 models selected 
    61454 
    61455 > select add #2.216
    61456 
    61457 40 models selected 
    61458 
    61459 > select add #2.52
    61460 
    61461 41 models selected 
    61462 
    61463 > select add #2.25
    61464 
    61465 42 models selected 
    61466 
    61467 > select add #2.148
    61468 
    61469 43 models selected 
    61470 
    61471 > select add #2.18
    61472 
    61473 44 models selected 
    61474 
    61475 > select add #2.227
    61476 
    61477 45 models selected 
    61478 
    61479 > select add #2.73
    61480 
    61481 46 models selected 
    61482 
    61483 > select add #2.37
    61484 
    61485 47 models selected 
    61486 
    61487 > select add #2.20
    61488 
    61489 48 models selected 
    61490 Grouped 48 regions 
    61491 
    61492 > hide #!1 models
    61493 
    61494 > select add #2.143
    61495 
    61496 2 models selected 
    61497 
    61498 > select add #2.257
    61499 
    61500 3 models selected 
    61501 
    61502 > select add #2.693
    61503 
    61504 4 models selected 
    61505 
    61506 > select add #2.141
    61507 
    61508 5 models selected 
    61509 
    61510 > select add #2.49
    61511 
    61512 6 models selected 
    61513 
    61514 > select add #2.75
    61515 
    61516 7 models selected 
    61517 
    61518 > select add #2.123
    61519 
    61520 8 models selected 
    61521 
    61522 > select add #2.205
    61523 
    61524 9 models selected 
    61525 
    61526 > select add #2.173
    61527 
    61528 10 models selected 
    61529 
    61530 > select add #2.317
    61531 
    61532 11 models selected 
    61533 
    61534 > select add #2.134
    61535 
    61536 12 models selected 
    61537 
    61538 > select add #2.208
    61539 
    61540 13 models selected 
    61541 
    61542 > select add #2.461
    61543 
    61544 14 models selected 
    61545 
    61546 > select add #2.178
    61547 
    61548 15 models selected 
    61549 
    61550 > select add #2.119
    61551 
    61552 16 models selected 
    61553 
    61554 > select add #2.663
    61555 
    61556 17 models selected 
    61557 
    61558 > select add #2.244
    61559 
    61560 18 models selected 
    61561 
    61562 > select add #2.188
    61563 
    61564 19 models selected 
    61565 
    61566 > select add #2.159
    61567 
    61568 20 models selected 
    61569 
    61570 > select add #2.115
    61571 
    61572 21 models selected 
    61573 
    61574 > select add #2.901
    61575 
    61576 22 models selected 
    61577 
    61578 > select add #2.196
    61579 
    61580 23 models selected 
    61581 
    61582 > select add #2.217
    61583 
    61584 24 models selected 
    61585 
    61586 > select add #2.432
    61587 
    61588 25 models selected 
    61589 
    61590 > select add #2.243
    61591 
    61592 26 models selected 
    61593 
    61594 > select add #2.189
    61595 
    61596 27 models selected 
    61597 
    61598 > select add #2.236
    61599 
    61600 28 models selected 
    61601 
    61602 > select add #2.234
    61603 
    61604 29 models selected 
    61605 
    61606 > select add #2.200
    61607 
    61608 30 models selected 
    61609 
    61610 > select add #2.433
    61611 
    61612 31 models selected 
    61613 
    61614 > select add #2.266
    61615 
    61616 32 models selected 
    61617 
    61618 > select add #2.851
    61619 
    61620 33 models selected 
    61621 
    61622 > select add #2.655
    61623 
    61624 34 models selected 
    61625 
    61626 > select add #2.455
    61627 
    61628 35 models selected 
    61629 
    61630 > select add #2.353
    61631 
    61632 36 models selected 
    61633 
    61634 > select add #2.402
    61635 
    61636 37 models selected 
    61637 
    61638 > select add #2.506
    61639 
    61640 38 models selected 
    61641 
    61642 > select add #2.281
    61643 
    61644 39 models selected 
    61645 
    61646 > select add #2.401
    61647 
    61648 40 models selected 
    61649 
    61650 > select add #2.467
    61651 
    61652 41 models selected 
    61653 
    61654 > select add #2.565
    61655 
    61656 42 models selected 
    61657 
    61658 > select add #2.300
    61659 
    61660 43 models selected 
    61661 
    61662 > select add #2.420
    61663 
    61664 44 models selected 
    61665 
    61666 > select add #2.423
    61667 
    61668 45 models selected 
    61669 Grouped 45 regions 
    61670 
    61671 The cached device pixel ratio value was stale on window expose. Please file a
    61672 QTBUG which explains how to reproduce. 
    61673 
    61674 > select #2.81
    61675 
    61676 1 model selected 
    61677 
    61678 > select add #2.35
    61679 
    61680 2 models selected 
    61681 Ungrouped to 12 regions 
    61682 Ungrouped to 27 regions 
    61683 Ungrouped to 21 regions 
    61684 
    61685 > select #2.19
    61686 
    61687 1 model selected 
    61688 Ungrouped to 3 regions 
    61689 Ungrouped to 0 regions 
    61690 
    61691 > select #2.65
    61692 
    61693 1 model selected 
    61694 
    61695 > select add #2.42
    61696 
    61697 2 models selected 
    61698 
    61699 > select add #2.51
    61700 
    61701 3 models selected 
    61702 Grouped 3 regions 
    61703 
    61704 > select add #2.4
    61705 
    61706 2 models selected 
    61707 Grouped 2 regions 
    61708 
    61709 > select #2.39
    61710 
    61711 1 model selected 
    61712 
    61713 > select add #2.197
    61714 
    61715 2 models selected 
    61716 Ungrouped to 6 regions 
    61717 Ungrouped to 15 regions 
    61718 Ungrouped to 24 regions 
    61719 Ungrouped to 8 regions 
    61720 Ungrouped to 0 regions 
    61721 
    61722 > select #2.4
    61723 
    61724 1 model selected 
    61725 
    61726 > select #2.234
    61727 
    61728 1 model selected 
    61729 
    61730 > select add #2.4
    61731 
    61732 2 models selected 
    61733 Grouped 2 regions 
    61734 
    61735 > select #2.125
    61736 
    61737 1 model selected 
    61738 
    61739 > select add #2.99
    61740 
    61741 2 models selected 
    61742 Ungrouped to 5 regions 
    61743 Ungrouped to 13 regions 
    61744 Ungrouped to 21 regions 
    61745 Ungrouped to 7 regions 
    61746 Ungrouped to 0 regions 
    61747 
    61748 > select #2.506
    61749 
    61750 1 model selected 
    61751 
    61752 > select add #2.467
    61753 
    61754 2 models selected 
    61755 Grouped 2 regions 
    61756 
    61757 > select add #2.4
    61758 
    61759 2 models selected 
    61760 Grouped 2 regions 
    61761 
    61762 > select #2.67
    61763 
    61764 1 model selected 
    61765 Ungrouped to 5 regions 
    61766 Ungrouped to 13 regions 
    61767 Ungrouped to 11 regions 
    61768 Ungrouped to 8 regions 
    61769 Ungrouped to 0 regions 
    61770 Ungrouped to 1615 regions 
    61771 Ungrouped to 3322 regions 
    61772 Ungrouped to 6024 regions 
    61773 
    61774 > select #2.655
    61775 
    61776 1 model selected 
    61777 
    61778 > select #2.1312
    61779 
    61780 1 model selected 
    61781 
    61782 > select add #2.1311
    61783 
    61784 2 models selected 
    61785 Grouped 2 regions 
    61786 
    61787 > select add #2.4
    61788 
    61789 2 models selected 
    61790 
    61791 > select add #2.9151
    61792 
    61793 3 models selected 
    61794 
    61795 > select add #2.9152
    61796 
    61797 4 models selected 
    61798 Grouped 4 regions 
    61799 
    61800 > select #2.3638
    61801 
    61802 1 model selected 
    61803 
    61804 > select add #2.5286
    61805 
    61806 2 models selected 
    61807 
    61808 > select add #2.3
    61809 
    61810 3 models selected 
    61811 
    61812 > select add #2.5194
    61813 
    61814 4 models selected 
    61815 
    61816 > select add #2.5977
    61817 
    61818 5 models selected 
    61819 
    61820 > select add #2.5399
    61821 
    61822 6 models selected 
    61823 
    61824 > select subtract #2.5399
    61825 
    61826 5 models selected 
    61827 
    61828 > select add #2.714
    61829 
    61830 6 models selected 
    61831 
    61832 > select add #2.5189
    61833 
    61834 7 models selected 
    61835 
    61836 > select add #2.5121
    61837 
    61838 8 models selected 
    61839 
    61840 > select add #2.4974
    61841 
    61842 9 models selected 
    61843 
    61844 > select add #2.3725
    61845 
    61846 10 models selected 
    61847 
    61848 > select add #2.8295
    61849 
    61850 11 models selected 
    61851 
    61852 > select subtract #2.3638
    61853 
    61854 10 models selected 
    61855 
    61856 > select subtract #2.5286
    61857 
    61858 9 models selected 
    61859 
    61860 > select add #2.5150
    61861 
    61862 10 models selected 
    61863 
    61864 > select add #2.5498
    61865 
    61866 11 models selected 
    61867 
    61868 > select add #2.5399
    61869 
    61870 12 models selected 
    61871 
    61872 > select add #2.709
    61873 
    61874 13 models selected 
    61875 
    61876 > select add #2.8881
    61877 
    61878 14 models selected 
    61879 
    61880 > select subtract #2.8881
    61881 
    61882 13 models selected 
    61883 
    61884 > select add #2.3638
    61885 
    61886 14 models selected 
    61887 
    61888 > select add #2.3910
    61889 
    61890 15 models selected 
    61891 
    61892 > select add #2.8223
    61893 
    61894 16 models selected 
    61895 
    61896 > select add #2.402
    61897 
    61898 17 models selected 
    61899 
    61900 > select add #2.5100
    61901 
    61902 18 models selected 
    61903 Grouped 18 regions 
    61904 Opened L0.12-Wild-type_EMD_45507_imasked as #3, grid size 250,250,250, pixel
    61905 4.3, shown at step 1, values float32 
    61906 
    61907 The cached device pixel ratio value was stale on window expose. Please file a
    61908 QTBUG which explains how to reproduce. 
    61909 
    61910 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/OM.mrc models #3
    61911 
    61912 Opened L0.12-Wild-type_EMD_45507_imasked as #4, grid size 250,250,250, pixel
    61913 4.3, shown at step 1, values float32 
    61914 
    61915 The cached device pixel ratio value was stale on window expose. Please file a
    61916 QTBUG which explains how to reproduce. 
    61917 
    61918 Segmenting L0.12-Wild-type_EMD_45507_imasked, density threshold 0.010668 
    61919 Showing 1191 region surfaces 
    61920 11278 watershed regions, grouped to 1191 regions 
    61921 Showing L0.seg - 1191 regions, 1191 surfaces 
    61922 
    61923 > hide #!3 models
    61924 
    61925 > hide #!4 models
    61926 
    61927 > select #2.25
    61928 
    61929 1 model selected 
    61930 
    61931 > select add #2.40
    61932 
    61933 2 models selected 
    61934 
    61935 > select add #2.66
    61936 
    61937 3 models selected 
    61938 
    61939 > select add #2.251
    61940 
    61941 4 models selected 
    61942 
    61943 > select add #2.880
    61944 
    61945 5 models selected 
    61946 
    61947 > select add #2.921
    61948 
    61949 6 models selected 
    61950 
    61951 > select add #2.565
    61952 
    61953 7 models selected 
    61954 
    61955 > select add #2.364
    61956 
    61957 8 models selected 
    61958 
    61959 > select add #2.583
    61960 
    61961 9 models selected 
    61962 
    61963 > select add #2.941
    61964 
    61965 10 models selected 
    61966 
    61967 > select add #2.27
    61968 
    61969 11 models selected 
    61970 
    61971 > select add #2.105
    61972 
    61973 12 models selected 
    61974 
    61975 > select add #2.107
    61976 
    61977 13 models selected 
    61978 Grouped 13 regions 
    61979 
    61980 > select add #2.47
    61981 
    61982 2 models selected 
    61983 
    61984 > select add #2.43
    61985 
    61986 3 models selected 
    61987 
    61988 > select add #2.52
    61989 
    61990 4 models selected 
    61991 
    61992 > select add #2.71
    61993 
    61994 5 models selected 
    61995 
    61996 > select subtract #2.52
    61997 
    61998 4 models selected 
    61999 
    62000 > select add #2.52
    62001 
    62002 5 models selected 
    62003 
    62004 > select add #2.41
    62005 
    62006 6 models selected 
    62007 
    62008 > select add #2.134
    62009 
    62010 7 models selected 
    62011 
    62012 > select add #2.17
    62013 
    62014 8 models selected 
    62015 Grouped 8 regions 
    62016 
    62017 > select add #2.166
    62018 
    62019 2 models selected 
    62020 
    62021 > select add #2.898
    62022 
    62023 3 models selected 
    62024 
    62025 > select add #2.330
    62026 
    62027 4 models selected 
    62028 
    62029 > select add #2.530
    62030 
    62031 5 models selected 
    62032 
    62033 > select add #2.506
    62034 
    62035 6 models selected 
    62036 
    62037 > select add #2.553
    62038 
    62039 7 models selected 
    62040 
    62041 > select add #2.905
    62042 
    62043 8 models selected 
    62044 
    62045 > select add #2.519
    62046 
    62047 9 models selected 
    62048 
    62049 > select add #2.526
    62050 
    62051 10 models selected 
    62052 
    62053 > select add #2.537
    62054 
    62055 11 models selected 
    62056 
    62057 > select add #2.328
    62058 
    62059 12 models selected 
    62060 
    62061 > select add #2.888
    62062 
    62063 13 models selected 
    62064 
    62065 > select add #2.271
    62066 
    62067 14 models selected 
    62068 
    62069 > select add #2.541
    62070 
    62071 15 models selected 
    62072 
    62073 > select add #2.883
    62074 
    62075 16 models selected 
    62076 
    62077 > select add #2.49
    62078 
    62079 17 models selected 
    62080 
    62081 > select add #2.42
    62082 
    62083 18 models selected 
    62084 
    62085 > select subtract #2.42
    62086 
    62087 17 models selected 
    62088 
    62089 > select add #2.42
    62090 
    62091 18 models selected 
    62092 
    62093 > select add #2.54
    62094 
    62095 19 models selected 
    62096 
    62097 > select add #2.34
    62098 
    62099 20 models selected 
    62100 
    62101 > select add #2.20
    62102 
    62103 21 models selected 
    62104 
    62105 > select add #2.24
    62106 
    62107 22 models selected 
    62108 
    62109 > select add #2.119
    62110 
    62111 23 models selected 
    62112 
    62113 > select add #2.21
    62114 
    62115 24 models selected 
    62116 
    62117 > select add #2.116
    62118 
    62119 25 models selected 
    62120 
    62121 > select add #2.50
    62122 
    62123 26 models selected 
    62124 
    62125 > select add #2.45
    62126 
    62127 27 models selected 
    62128 
    62129 > select add #2.138
    62130 
    62131 28 models selected 
    62132 
    62133 > select add #2.305
    62134 
    62135 29 models selected 
    62136 
    62137 > select add #2.193
    62138 
    62139 30 models selected 
    62140 
    62141 > select add #2.33
    62142 
    62143 31 models selected 
    62144 
    62145 > select add #2.16
    62146 
    62147 32 models selected 
    62148 
    62149 > select add #2.151
    62150 
    62151 33 models selected 
    62152 
    62153 > select add #2.135
    62154 
    62155 34 models selected 
    62156 
    62157 > select add #2.23
    62158 
    62159 35 models selected 
    62160 
    62161 > select add #2.46
    62162 
    62163 36 models selected 
    62164 
    62165 > select add #2.39
    62166 
    62167 37 models selected 
    62168 
    62169 > select add #2.53
    62170 
    62171 38 models selected 
    62172 
    62173 > select add #2.148
    62174 
    62175 39 models selected 
    62176 
    62177 > select add #2.560
    62178 
    62179 40 models selected 
    62180 
    62181 > select add #2.789
    62182 
    62183 41 models selected 
    62184 
    62185 > select add #2.600
    62186 
    62187 42 models selected 
    62188 
    62189 > select add #2.809
    62190 
    62191 43 models selected 
    62192 
    62193 > select add #2.836
    62194 
    62195 44 models selected 
    62196 
    62197 > select add #2.415
    62198 
    62199 45 models selected 
    62200 
    62201 > select add #2.597
    62202 
    62203 46 models selected 
    62204 
    62205 > select add #2.807
    62206 
    62207 47 models selected 
    62208 
    62209 > select add #2.544
    62210 
    62211 48 models selected 
    62212 
    62213 > select add #2.656
    62214 
    62215 49 models selected 
    62216 
    62217 > select add #2.804
    62218 
    62219 50 models selected 
    62220 
    62221 > select add #2.606
    62222 
    62223 51 models selected 
    62224 
    62225 > select add #2.796
    62226 
    62227 52 models selected 
    62228 
    62229 > select add #2.912
    62230 
    62231 53 models selected 
    62232 
    62233 > select add #2.551
    62234 
    62235 54 models selected 
    62236 
    62237 > select add #2.621
    62238 
    62239 55 models selected 
    62240 
    62241 > select add #2.756
    62242 
    62243 56 models selected 
    62244 
    62245 > select add #2.339
    62246 
    62247 57 models selected 
    62248 
    62249 > select add #2.548
    62250 
    62251 58 models selected 
    62252 
    62253 > select add #2.517
    62254 
    62255 59 models selected 
    62256 
    62257 > select add #2.778
    62258 
    62259 60 models selected 
    62260 
    62261 > select add #2.542
    62262 
    62263 61 models selected 
    62264 
    62265 > select add #2.287
    62266 
    62267 62 models selected 
    62268 
    62269 > select add #2.211
    62270 
    62271 63 models selected 
    62272 
    62273 > select add #2.244
    62274 
    62275 64 models selected 
    62276 
    62277 > select add #2.379
    62278 
    62279 65 models selected 
    62280 
    62281 > select add #2.308
    62282 
    62283 66 models selected 
    62284 
    62285 > select add #2.291
    62286 
    62287 67 models selected 
    62288 
    62289 > select add #2.697
    62290 
    62291 68 models selected 
    62292 
    62293 > select add #2.277
    62294 
    62295 69 models selected 
    62296 
    62297 > select add #2.738
    62298 
    62299 70 models selected 
    62300 
    62301 > select add #2.378
    62302 
    62303 71 models selected 
    62304 
    62305 > select add #2.397
    62306 
    62307 72 models selected 
    62308 
    62309 > select add #2.712
    62310 
    62311 73 models selected 
    62312 
    62313 > select add #2.505
    62314 
    62315 74 models selected 
    62316 
    62317 > select add #2.665
    62318 
    62319 75 models selected 
    62320 
    62321 > select add #2.767
    62322 
    62323 76 models selected 
    62324 
    62325 > select add #2.424
    62326 
    62327 77 models selected 
    62328 
    62329 > select add #2.803
    62330 
    62331 78 models selected 
    62332 
    62333 > select add #2.609
    62334 
    62335 79 models selected 
    62336 
    62337 > select add #2.247
    62338 
    62339 80 models selected 
    62340 
    62341 > select add #2.728
    62342 
    62343 81 models selected 
    62344 
    62345 > select add #2.441
    62346 
    62347 82 models selected 
    62348 
    62349 > select add #2.270
    62350 
    62351 83 models selected 
    62352 
    62353 > select add #2.275
    62354 
    62355 84 models selected 
    62356 
    62357 > select add #2.215
    62358 
    62359 85 models selected 
    62360 
    62361 > select add #2.693
    62362 
    62363 86 models selected 
    62364 
    62365 > select add #2.392
    62366 
    62367 87 models selected 
    62368 
    62369 > select add #2.635
    62370 
    62371 88 models selected 
    62372 
    62373 > select add #2.800
    62374 
    62375 89 models selected 
    62376 
    62377 > select add #2.401
    62378 
    62379 90 models selected 
    62380 
    62381 > select add #2.706
    62382 
    62383 91 models selected 
    62384 
    62385 > select add #2.303
    62386 
    62387 92 models selected 
    62388 
    62389 > select add #2.189
    62390 
    62391 93 models selected 
    62392 
    62393 > select add #2.430
    62394 
    62395 94 models selected 
    62396 
    62397 > select add #2.731
    62398 
    62399 95 models selected 
    62400 
    62401 > select add #2.374
    62402 
    62403 96 models selected 
    62404 
    62405 > select add #2.726
    62406 
    62407 97 models selected 
    62408 
    62409 > select add #2.715
    62410 
    62411 98 models selected 
    62412 
    62413 > select add #2.306
    62414 
    62415 99 models selected 
    62416 
    62417 > select add #2.224
    62418 
    62419 100 models selected 
    62420 
    62421 > select subtract #2.224
    62422 
    62423 99 models selected 
    62424 
    62425 > select add #2.224
    62426 
    62427 100 models selected 
    62428 
    62429 > select add #2.213
    62430 
    62431 101 models selected 
    62432 
    62433 > select add #2.680
    62434 
    62435 102 models selected 
    62436 
    62437 > select add #2.533
    62438 
    62439 103 models selected 
    62440 
    62441 > select add #2.249
    62442 
    62443 104 models selected 
    62444 
    62445 > select add #2.310
    62446 
    62447 105 models selected 
    62448 
    62449 > select add #2.443
    62450 
    62451 106 models selected 
    62452 
    62453 > select add #2.552
    62454 
    62455 107 models selected 
    62456 
    62457 > select add #2.237
    62458 
    62459 108 models selected 
    62460 
    62461 > select add #2.214
    62462 
    62463 109 models selected 
    62464 
    62465 > select add #2.429
    62466 
    62467 110 models selected 
    62468 
    62469 > select add #2.676
    62470 
    62471 111 models selected 
    62472 
    62473 > select add #2.388
    62474 
    62475 112 models selected 
    62476 
    62477 > select add #2.901
    62478 
    62479 113 models selected 
    62480 
    62481 > select add #2.690
    62482 
    62483 114 models selected 
    62484 
    62485 > select add #2.256
    62486 
    62487 115 models selected 
    62488 
    62489 > select subtract #2.256
    62490 
    62491 114 models selected 
    62492 
    62493 > select add #2.256
    62494 
    62495 115 models selected 
    62496 
    62497 > select add #2.798
    62498 
    62499 116 models selected 
    62500 
    62501 > select add #2.521
    62502 
    62503 117 models selected 
    62504 
    62505 > select add #2.748
    62506 
    62507 118 models selected 
    62508 
    62509 > select add #2.217
    62510 
    62511 119 models selected 
    62512 
    62513 > select add #2.234
    62514 
    62515 120 models selected 
    62516 
    62517 > select add #2.437
    62518 
    62519 121 models selected 
    62520 
    62521 > select add #2.716
    62522 
    62523 122 models selected 
    62524 
    62525 > select add #2.525
    62526 
    62527 123 models selected 
    62528 
    62529 > select add #2.338
    62530 
    62531 124 models selected 
    62532 
    62533 > select add #2.599
    62534 
    62535 125 models selected 
    62536 
    62537 > select add #2.673
    62538 
    62539 126 models selected 
    62540 
    62541 > select add #2.141
    62542 
    62543 127 models selected 
    62544 
    62545 > select add #2.220
    62546 
    62547 128 models selected 
    62548 
    62549 > select add #2.875
    62550 
    62551 129 models selected 
    62552 
    62553 > select add #2.642
    62554 
    62555 130 models selected 
    62556 
    62557 > select add #2.702
    62558 
    62559 131 models selected 
    62560 
    62561 > select add #2.444
    62562 
    62563 132 models selected 
    62564 
    62565 > select add #2.805
    62566 
    62567 133 models selected 
    62568 
    62569 > select add #2.337
    62570 
    62571 134 models selected 
    62572 
    62573 > select add #2.529
    62574 
    62575 135 models selected 
    62576 
    62577 > select add #2.351
    62578 
    62579 136 models selected 
    62580 
    62581 > select subtract #2.351
    62582 
    62583 135 models selected 
    62584 
    62585 > select add #2.351
    62586 
    62587 136 models selected 
    62588 
    62589 > select add #2.520
    62590 
    62591 137 models selected 
    62592 
    62593 > select add #2.555
    62594 
    62595 138 models selected 
    62596 
    62597 > select add #2.260
    62598 
    62599 139 models selected 
    62600 
    62601 > select add #2.273
    62602 
    62603 140 models selected 
    62604 
    62605 > select add #2.297
    62606 
    62607 141 models selected 
    62608 
    62609 > select add #2.762
    62610 
    62611 142 models selected 
    62612 
    62613 > select add #2.813
    62614 
    62615 143 models selected 
    62616 
    62617 > select add #2.408
    62618 
    62619 144 models selected 
    62620 
    62621 > select add #2.669
    62622 
    62623 145 models selected 
    62624 
    62625 > select add #2.696
    62626 
    62627 146 models selected 
    62628 
    62629 > select add #2.452
    62630 
    62631 147 models selected 
    62632 
    62633 > select subtract #2.452
    62634 
    62635 146 models selected 
    62636 
    62637 > select add #2.299
    62638 
    62639 147 models selected 
    62640 
    62641 > select add #2.452
    62642 
    62643 148 models selected 
    62644 
    62645 > select add #2.546
    62646 
    62647 149 models selected 
    62648 
    62649 > select add #2.188
    62650 
    62651 150 models selected 
    62652 
    62653 > select add #2.231
    62654 
    62655 151 models selected 
    62656 
    62657 > select add #2.730
    62658 
    62659 152 models selected 
    62660 
    62661 > select add #2.607
    62662 
    62663 153 models selected 
    62664 
    62665 > select add #2.373
    62666 
    62667 154 models selected 
    62668 
    62669 > select add #2.512
    62670 
    62671 155 models selected 
    62672 
    62673 > select add #2.516
    62674 
    62675 156 models selected 
    62676 
    62677 > select add #2.879
    62678 
    62679 157 models selected 
    62680 
    62681 > select add #2.679
    62682 
    62683 158 models selected 
    62684 
    62685 > select add #2.341
    62686 
    62687 159 models selected 
    62688 
    62689 > select add #2.399
    62690 
    62691 160 models selected 
    62692 
    62693 > select add #2.278
    62694 
    62695 161 models selected 
    62696 
    62697 > select add #2.112
    62698 
    62699 162 models selected 
    62700 
    62701 > select add #2.703
    62702 
    62703 163 models selected 
    62704 
    62705 > select add #2.395
    62706 
    62707 164 models selected 
    62708 
    62709 > select add #2.645
    62710 
    62711 165 models selected 
    62712 
    62713 > select add #2.409
    62714 
    62715 166 models selected 
    62716 
    62717 > select add #2.396
    62718 
    62719 167 models selected 
    62720 
    62721 > select add #2.681
    62722 
    62723 168 models selected 
    62724 
    62725 > select add #2.754
    62726 
    62727 169 models selected 
    62728 
    62729 > select add #2.788
    62730 
    62731 170 models selected 
    62732 
    62733 > select add #2.601
    62734 
    62735 171 models selected 
    62736 
    62737 > select add #2.769
    62738 
    62739 172 models selected 
    62740 
    62741 > select subtract #2.112
    62742 
    62743 171 models selected 
    62744 Grouped 171 regions 
    62745 
    62746 > select clear
    62747 
    62748 > select #2.1060
    62749 
    62750 1 model selected 
    62751 
    62752 > select #2.1060
    62753 
    62754 1 model selected 
    62755 
    62756 > select #2.16
    62757 
    62758 1 model selected 
    62759 
    62760 > ui tool show "Side View"
    62761 
    62762 Opened L0_imasked as #5, grid size 250,250,250, pixel 4.3, shown at step 1,
    62763 values float32 
    62764 
    62765 The cached device pixel ratio value was stale on window expose. Please file a
    62766 QTBUG which explains how to reproduce. 
    62767 
    62768 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/Basal_disk.mrc models
    62769 > #5
    62770 
    62771 Opened L0_imasked as #6, grid size 250,250,250, pixel 4.3, shown at step 1,
    62772 values float32 
    62773 Segmenting L0_imasked, density threshold 0.010668 
    62774 Showing 1000 region surfaces 
    62775 9960 watershed regions, grouped to 1000 regions 
    62776 Showing L0_imasked.seg - 1000 regions, 1000 surfaces 
    62777 
    62778 > hide #!5 models
    62779 
    62780 > hide #!6 models
    62781 
    62782 > select #2.537
    62783 
    62784 1 model selected 
    62785 
    62786 > select add #2.563
    62787 
    62788 2 models selected 
    62789 
    62790 > select add #2.577
    62791 
    62792 3 models selected 
    62793 
    62794 > select add #2.588
    62795 
    62796 4 models selected 
    62797 
    62798 > select add #2.484
    62799 
    62800 5 models selected 
    62801 
    62802 > select add #2.468
    62803 
    62804 6 models selected 
    62805 
    62806 > select add #2.476
    62807 
    62808 7 models selected 
    62809 
    62810 > select add #2.467
    62811 
    62812 8 models selected 
    62813 
    62814 > select add #2.490
    62815 
    62816 9 models selected 
    62817 
    62818 > select add #2.559
    62819 
    62820 10 models selected 
    62821 
    62822 > select add #2.592
    62823 
    62824 11 models selected 
    62825 
    62826 > select add #2.471
    62827 
    62828 12 models selected 
    62829 
    62830 > select add #2.568
    62831 
    62832 13 models selected 
    62833 
    62834 > select add #2.500
    62835 
    62836 14 models selected 
    62837 
    62838 > select add #2.469
    62839 
    62840 15 models selected 
    62841 
    62842 > select add #2.239
    62843 
    62844 16 models selected 
    62845 
    62846 > select add #2.451
    62847 
    62848 17 models selected 
    62849 
    62850 > select add #2.480
    62851 
    62852 18 models selected 
    62853 
    62854 > select add #2.582
    62855 
    62856 19 models selected 
    62857 
    62858 > select add #2.692
    62859 
    62860 20 models selected 
    62861 
    62862 > select add #2.591
    62863 
    62864 21 models selected 
    62865 
    62866 > select add #2.474
    62867 
    62868 22 models selected 
    62869 
    62870 > select add #2.585
    62871 
    62872 23 models selected 
    62873 
    62874 > select add #2.556
    62875 
    62876 24 models selected 
    62877 
    62878 > select add #2.355
    62879 
    62880 25 models selected 
    62881 
    62882 > select add #2.574
    62883 
    62884 26 models selected 
    62885 
    62886 > select add #2.499
    62887 
    62888 27 models selected 
    62889 
    62890 > select add #2.461
    62891 
    62892 28 models selected 
    62893 
    62894 > select add #2.584
    62895 
    62896 29 models selected 
    62897 
    62898 > select add #2.570
    62899 
    62900 30 models selected 
    62901 
    62902 > select add #2.496
    62903 
    62904 31 models selected 
    62905 
    62906 > select add #2.320
    62907 
    62908 32 models selected 
    62909 Grouped 32 regions 
    62910 
    62911 > select clear
    62912 
    62913 > select #2.865
    62914 
    62915 1 model selected 
    62916 
    62917 > select add #2.820
    62918 
    62919 2 models selected 
    62920 Showing 969 region surfaces 
    62921 Grouped 2 regions 
    62922 
    62923 > select clear
    62924 
    62925 > select #2.239
    62926 
    62927 1 model selected 
    62928 Showing 968 region surfaces 
    62929 
    62930 > select clear
    62931 
    62932 > select #2.239
    62933 
    62934 1 model selected 
    62935 Opened L0_imasked_imasked as #7, grid size 250,250,250, pixel 4.3, shown at
    62936 step 1, values float32 
    62937 
    62938 The cached device pixel ratio value was stale on window expose. Please file a
    62939 QTBUG which explains how to reproduce. 
    62940 
    62941 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/LP-ring.mrc models #7
    62942 
    62943 Opened L0_imasked_imasked as #8, grid size 250,250,250, pixel 4.3, shown at
    62944 step 1, values float32 
    62945 Segmenting L0_imasked_imasked, density threshold 0.010668 
    62946 Showing 965 region surfaces 
    62947 9863 watershed regions, grouped to 965 regions 
    62948 Showing L0_imasked_imasked.seg - 965 regions, 965 surfaces 
    62949 
    62950 > hide #!7 models
    62951 
    62952 > hide #!8 models
    62953 
    62954 > close #7-8
    62955 
    62956 Segmenting L0_imasked, density threshold 0.010668 
    62957 Showing 1000 region surfaces 
    62958 9960 watershed regions, grouped to 1000 regions 
    62959 Showing L0_imasked.seg - 1000 regions, 1000 surfaces 
    62960 
    62961 > select #2.481
    62962 
    62963 1 model selected 
    62964 
    62965 > select add #2.239
    62966 
    62967 2 models selected 
    62968 
    62969 > select add #2.451
    62970 
    62971 3 models selected 
    62972 
    62973 > select add #2.691
    62974 
    62975 4 models selected 
    62976 
    62977 > select add #2.582
    62978 
    62979 5 models selected 
    62980 
    62981 > select add #2.585
    62982 
    62983 6 models selected 
    62984 
    62985 > select add #2.474
    62986 
    62987 7 models selected 
    62988 
    62989 > select add #2.591
    62990 
    62991 8 models selected 
    62992 
    62993 > select add #2.355
    62994 
    62995 9 models selected 
    62996 
    62997 > select add #2.499
    62998 
    62999 10 models selected 
    63000 
    63001 > select add #2.574
    63002 
    63003 11 models selected 
    63004 
    63005 > select subtract #2.574
    63006 
    63007 10 models selected 
    63008 
    63009 > select add #2.556
    63010 
    63011 11 models selected 
    63012 
    63013 > select add #2.574
    63014 
    63015 12 models selected 
    63016 
    63017 > select add #2.584
    63018 
    63019 13 models selected 
    63020 
    63021 > select add #2.461
    63022 
    63023 14 models selected 
    63024 
    63025 > select add #2.570
    63026 
    63027 15 models selected 
    63028 
    63029 > select add #2.496
    63030 
    63031 16 models selected 
    63032 
    63033 > select add #2.320
    63034 
    63035 17 models selected 
    63036 
    63037 > select add #2.469
    63038 
    63039 18 models selected 
    63040 
    63041 > select add #2.500
    63042 
    63043 19 models selected 
    63044 
    63045 > select add #2.568
    63046 
    63047 20 models selected 
    63048 
    63049 > select add #2.471
    63050 
    63051 21 models selected 
    63052 
    63053 > select add #2.592
    63054 
    63055 22 models selected 
    63056 
    63057 > select add #2.490
    63058 
    63059 23 models selected 
    63060 
    63061 > select add #2.559
    63062 
    63063 24 models selected 
    63064 
    63065 > select add #2.468
    63066 
    63067 25 models selected 
    63068 
    63069 > select add #2.537
    63070 
    63071 26 models selected 
    63072 
    63073 > select add #2.476
    63074 
    63075 27 models selected 
    63076 
    63077 > select add #2.467
    63078 
    63079 28 models selected 
    63080 
    63081 > select add #2.563
    63082 
    63083 29 models selected 
    63084 
    63085 > select add #2.577
    63086 
    63087 30 models selected 
    63088 
    63089 > select add #2.484
    63090 
    63091 31 models selected 
    63092 
    63093 > select add #2.588
    63094 
    63095 32 models selected 
    63096 Grouped 32 regions 
    63097 
    63098 > select add #2.869
    63099 
    63100 2 models selected 
    63101 
    63102 > select add #2.820
    63103 
    63104 3 models selected 
    63105 Grouped 3 regions 
    63106 
    63107 > select clear
    63108 
    63109 > select #2.239
    63110 
    63111 1 model selected 
    63112 Opened L0_imasked_imasked as #7, grid size 250,250,250, pixel 4.3, shown at
    63113 step 1, values float32 
    63114 
    63115 The cached device pixel ratio value was stale on window expose. Please file a
    63116 QTBUG which explains how to reproduce. 
    63117 
    63118 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/LP-ring.mrc models #7
    63119 
    63120 Opened L0_imasked_imasked as #8, grid size 250,250,250, pixel 4.3, shown at
    63121 step 1, values float32 
    63122 Segmenting L0_imasked_imasked, density threshold 0.010668 
    63123 Showing 965 region surfaces 
    63124 9861 watershed regions, grouped to 965 regions 
    63125 Showing L0_imasked_imasked.seg - 965 regions, 965 surfaces 
    63126 
    63127 > hide #!7 models
    63128 
    63129 > select #2.98
    63130 
    63131 1 model selected 
    63132 
    63133 > select add #2.209
    63134 
    63135 2 models selected 
    63136 
    63137 > select add #2.228
    63138 
    63139 3 models selected 
    63140 
    63141 > select add #2.110
    63142 
    63143 4 models selected 
    63144 
    63145 > select add #2.347
    63146 
    63147 5 models selected 
    63148 
    63149 > select add #2.241
    63150 
    63151 6 models selected 
    63152 
    63153 > select add #2.87
    63154 
    63155 7 models selected 
    63156 
    63157 > select add #2.351
    63158 
    63159 8 models selected 
    63160 
    63161 > select add #2.237
    63162 
    63163 9 models selected 
    63164 
    63165 > select add #2.166
    63166 
    63167 10 models selected 
    63168 
    63169 > select add #2.146
    63170 
    63171 11 models selected 
    63172 
    63173 > select add #2.231
    63174 
    63175 12 models selected 
    63176 
    63177 > select add #2.121
    63178 
    63179 13 models selected 
    63180 
    63181 > select add #2.447
    63182 
    63183 14 models selected 
    63184 
    63185 > select add #2.723
    63186 
    63187 15 models selected 
    63188 
    63189 > select add #2.226
    63190 
    63191 16 models selected 
    63192 
    63193 > select add #2.114
    63194 
    63195 17 models selected 
    63196 
    63197 > select add #2.360
    63198 
    63199 18 models selected 
    63200 
    63201 > select add #2.214
    63202 
    63203 19 models selected 
    63204 
    63205 > select add #2.99
    63206 
    63207 20 models selected 
    63208 
    63209 > select add #2.238
    63210 
    63211 21 models selected 
    63212 
    63213 > select add #2.442
    63214 
    63215 22 models selected 
    63216 
    63217 > select add #2.93
    63218 
    63219 23 models selected 
    63220 
    63221 > select add #2.344
    63222 
    63223 24 models selected 
    63224 
    63225 > select add #2.239
    63226 
    63227 25 models selected 
    63228 
    63229 > select add #2.96
    63230 
    63231 26 models selected 
    63232 
    63233 > select add #2.453
    63234 
    63235 27 models selected 
    63236 
    63237 > select add #2.717
    63238 
    63239 28 models selected 
    63240 
    63241 > select add #2.208
    63242 
    63243 29 models selected 
    63244 
    63245 > select add #2.112
    63246 
    63247 30 models selected 
    63248 
    63249 > select add #2.444
    63250 
    63251 31 models selected 
    63252 
    63253 > select add #2.113
    63254 
    63255 32 models selected 
    63256 
    63257 > select add #2.233
    63258 
    63259 33 models selected 
    63260 
    63261 > select add #2.357
    63262 
    63263 34 models selected 
    63264 
    63265 > select add #2.207
    63266 
    63267 35 models selected 
    63268 
    63269 > select add #2.167
    63270 
    63271 36 models selected 
    63272 
    63273 > select add #2.153
    63274 
    63275 37 models selected 
    63276 
    63277 > select add #2.119
    63278 
    63279 38 models selected 
    63280 
    63281 > select add #2.242
    63282 
    63283 39 models selected 
    63284 
    63285 > select add #2.369
    63286 
    63287 40 models selected 
    63288 
    63289 > select add #2.85
    63290 
    63291 41 models selected 
    63292 
    63293 > select add #2.212
    63294 
    63295 42 models selected 
    63296 
    63297 > select add #2.446
    63298 
    63299 43 models selected 
    63300 
    63301 > select add #2.227
    63302 
    63303 44 models selected 
    63304 
    63305 > select add #2.108
    63306 
    63307 45 models selected 
    63308 
    63309 > select add #2.346
    63310 
    63311 46 models selected 
    63312 
    63313 > select add #2.240
    63314 
    63315 47 models selected 
    63316 
    63317 > select add #2.210
    63318 
    63319 48 models selected 
    63320 
    63321 > select add #2.268
    63322 
    63323 49 models selected 
    63324 
    63325 > select add #2.353
    63326 
    63327 50 models selected 
    63328 
    63329 > select add #2.235
    63330 
    63331 51 models selected 
    63332 
    63333 > select add #2.714
    63334 
    63335 52 models selected 
    63336 
    63337 > select add #2.456
    63338 
    63339 53 models selected 
    63340 
    63341 > select add #2.117
    63342 
    63343 54 models selected 
    63344 
    63345 > select add #2.667
    63346 
    63347 55 models selected 
    63348 
    63349 > hide #!8 models
    63350 
    63351 > show #!8 models
    63352 
    63353 > select add #2.588
    63354 
    63355 56 models selected 
    63356 
    63357 > select add #2.637
    63358 
    63359 57 models selected 
    63360 
    63361 > select add #2.449
    63362 
    63363 58 models selected 
    63364 
    63365 > select add #2.639
    63366 
    63367 59 models selected 
    63368 
    63369 > select add #2.591
    63370 
    63371 60 models selected 
    63372 
    63373 > hide #!8 models
    63374 
    63375 > select #2.453
    63376 
    63377 1 model selected 
    63378 
    63379 > select add #2.344
    63380 
    63381 2 models selected 
    63382 
    63383 > select add #2.442
    63384 
    63385 3 models selected 
    63386 
    63387 > select add #2.360
    63388 
    63389 4 models selected 
    63390 
    63391 > select add #2.447
    63392 
    63393 5 models selected 
    63394 
    63395 > select add #2.146
    63396 
    63397 6 models selected 
    63398 
    63399 > select add #2.351
    63400 
    63401 7 models selected 
    63402 
    63403 > select add #2.347
    63404 
    63405 8 models selected 
    63406 
    63407 > select add #2.449
    63408 
    63409 9 models selected 
    63410 
    63411 > select add #2.456
    63412 
    63413 10 models selected 
    63414 
    63415 > select add #2.353
    63416 
    63417 11 models selected 
    63418 
    63419 > select add #2.446
    63420 
    63421 12 models selected 
    63422 
    63423 > select add #2.346
    63424 
    63425 13 models selected 
    63426 
    63427 > select add #2.369
    63428 
    63429 14 models selected 
    63430 
    63431 > select add #2.153
    63432 
    63433 15 models selected 
    63434 
    63435 > select add #2.357
    63436 
    63437 16 models selected 
    63438 
    63439 > select add #2.444
    63440 
    63441 17 models selected 
    63442 Ungrouped to 40 regions 
    63443 
    63444 > select #2.972
    63445 
    63446 1 model selected 
    63447 
    63448 > select add #2.988
    63449 
    63450 2 models selected 
    63451 
    63452 > select add #2.998
    63453 
    63454 3 models selected 
    63455 
    63456 > select add #2.1003
    63457 
    63458 4 models selected 
    63459 
    63460 > select #2.1003
    63461 
    63462 1 model selected 
    63463 Ungrouped to 2 regions 
    63464 
    63465 > select clear
    63466 
    63467 > select #2.146
    63468 
    63469 1 model selected 
    63470 
    63471 > select add #2.998
    63472 
    63473 2 models selected 
    63474 
    63475 > select add #2.988
    63476 
    63477 3 models selected 
    63478 
    63479 > select add #2.972
    63480 
    63481 4 models selected 
    63482 
    63483 > select add #2.966
    63484 
    63485 5 models selected 
    63486 
    63487 > select add #2.973
    63488 
    63489 6 models selected 
    63490 
    63491 > select add #2.991
    63492 
    63493 7 models selected 
    63494 
    63495 > select add #2.976
    63496 
    63497 8 models selected 
    63498 
    63499 > select add #2.999
    63500 
    63501 9 models selected 
    63502 
    63503 > select add #2.978
    63504 
    63505 10 models selected 
    63506 
    63507 > select add #2.969
    63508 
    63509 11 models selected 
    63510 
    63511 > select add #2.981
    63512 
    63513 12 models selected 
    63514 
    63515 > select add #2.985
    63516 
    63517 13 models selected 
    63518 
    63519 > select add #2.993
    63520 
    63521 14 models selected 
    63522 Grouped 14 regions 
    63523 
    63524 > select clear
    63525 
    63526 > select #2.989
    63527 
    63528 1 model selected 
    63529 
    63530 > select add #2.1005
    63531 
    63532 2 models selected 
    63533 
    63534 > select add #2.996
    63535 
    63536 3 models selected 
    63537 Ungrouped to 7 regions 
    63538 
    63539 > select clear
    63540 
    63541 > select #2.353
    63542 
    63543 1 model selected 
    63544 
    63545 > select add #2.344
    63546 
    63547 2 models selected 
    63548 
    63549 > select add #2.347
    63550 
    63551 3 models selected 
    63552 
    63553 > select add #2.146
    63554 
    63555 4 models selected 
    63556 Grouped 4 regions 
    63557 
    63558 > select clear
    63559 
    63560 [Repeated 1 time(s)]Drag select of 14375, 19792 of 22604 triangles, 14273,
    63561 14276, 14450, 14288, 14470, 14280, 14286, 14397, 14377, 14272, 14281, 14560,
    63562 17270 of 18064 triangles, 14380, 14330, 14306, 14098, 13665, 13679, 14559,
    63563 13654, 13839, 14147, 14123, 14145, 13657, 13660, 13667, 13685, 14152, 13686,
    63564 13688, 13670, 13652, 10880, 13610, 13621, 12155, 12207, 12170, 8109, 8080,
    63565 8089, 8096, 8097, 8104, 8087, 8102, 8103, 8131, 8108, 8128, 8090, 8118, 8085,
    63566 8084, 8082, 13512, 8110, 8115, 10873, 8078, 8132, 8111, 8079, 8098, 8112,
    63567 8123, 8125, 8121, 8093 
    63568 Grouped 71 regions 
    63569 Showing 907 region surfaces 
    63570 
    63571 > select #2.600
    63572 
    63573 1 model selected 
    63574 
    63575 > select add #2.650
    63576 
    63577 2 models selected 
    63578 
    63579 > select add #2.603
    63580 
    63581 3 models selected 
    63582 
    63583 > select add #2.718
    63584 
    63585 4 models selected 
    63586 
    63587 > select add #2.675
    63588 
    63589 5 models selected 
    63590 
    63591 > select add #2.85
    63592 
    63593 6 models selected 
    63594 Grouped 6 regions 
    63595 
    63596 > select #2.190
    63597 
    63598 1 model selected 
    63599 
    63600 > select add #2.178
    63601 
    63602 2 models selected 
    63603 
    63604 > select add #2.189
    63605 
    63606 3 models selected 
    63607 Ungrouped to 9 regions 
    63608 
    63609 > select #2.110
    63610 
    63611 1 model selected 
    63612 
    63613 > select add #2.113
    63614 
    63615 2 models selected 
    63616 
    63617 > select add #2.98
    63618 
    63619 3 models selected 
    63620 
    63621 > select add #2.99
    63622 
    63623 4 models selected 
    63624 
    63625 > select add #2.93
    63626 
    63627 5 models selected 
    63628 
    63629 > select add #2.87
    63630 
    63631 6 models selected 
    63632 Ungrouped to 13 regions 
    63633 
    63634 > select #2.119
    63635 
    63636 1 model selected 
    63637 
    63638 > select add #2.121
    63639 
    63640 2 models selected 
    63641 
    63642 > select add #2.208
    63643 
    63644 3 models selected 
    63645 
    63646 > select add #2.209
    63647 
    63648 4 models selected 
    63649 
    63650 > select add #2.190
    63651 
    63652 5 models selected 
    63653 Grouped 5 regions 
    63654 
    63655 > select add #2.207
    63656 
    63657 2 models selected 
    63658 Grouped 2 regions 
    63659 
    63660 > select #2.191
    63661 
    63662 1 model selected 
    63663 
    63664 > select add #2.177
    63665 
    63666 2 models selected 
    63667 
    63668 > select add #2.182
    63669 
    63670 3 models selected 
    63671 
    63672 > select add #2.174
    63673 
    63674 4 models selected 
    63675 
    63676 > select add #2.180
    63677 
    63678 5 models selected 
    63679 Ungrouped to 13 regions 
    63680 Ungrouped to 20 regions 
    63681 
    63682 > select clear
    63683 
    63684 > select #2.233
    63685 
    63686 1 model selected 
    63687 
    63688 > select add #2.226
    63689 
    63690 2 models selected 
    63691 
    63692 > select add #2.227
    63693 
    63694 3 models selected 
    63695 
    63696 > select add #2.180
    63697 
    63698 4 models selected 
    63699 
    63700 > select add #2.182
    63701 
    63702 5 models selected 
    63703 
    63704 > select add #2.228
    63705 
    63706 6 models selected 
    63707 
    63708 > select add #2.231
    63709 
    63710 7 models selected 
    63711 
    63712 > select add #2.268
    63713 
    63714 8 models selected 
    63715 
    63716 > select add #2.344
    63717 
    63718 9 models selected 
    63719 
    63720 > select add #2.242
    63721 
    63722 10 models selected 
    63723 
    63724 > select subtract #2.242
    63725 
    63726 9 models selected 
    63727 Grouped 9 regions 
    63728 
    63729 > select add #2.87
    63730 
    63731 2 models selected 
    63732 Showing 921 region surfaces 
    63733 
    63734 > select add #2.85
    63735 
    63736 3 models selected 
    63737 Grouped 3 regions 
    63738 
    63739 > select clear
    63740 
    63741 > select #2.85
    63742 
    63743 1 model selected 
    63744 
    63745 > select #2.186
    63746 
    63747 1 model selected 
    63748 
    63749 > select add #2.181
    63750 
    63751 2 models selected 
    63752 
    63753 > select add #2.184
    63754 
    63755 3 models selected 
    63756 
    63757 > select add #2.175
    63758 
    63759 4 models selected 
    63760 
    63761 > select add #2.187
    63762 
    63763 5 models selected 
    63764 
    63765 > select add #2.188
    63766 
    63767 6 models selected 
    63768 
    63769 > select add #2.176
    63770 
    63771 7 models selected 
    63772 
    63773 > select add #2.183
    63774 
    63775 8 models selected 
    63776 
    63777 > select add #2.193
    63778 
    63779 9 models selected 
    63780 Ungrouped to 26 regions 
    63781 Ungrouped to 35 regions 
    63782 Ungrouped to 15 regions 
    63783 
    63784 > select #2.970
    63785 
    63786 1 model selected 
    63787 
    63788 > select add #2.971
    63789 
    63790 2 models selected 
    63791 
    63792 > select add #2.210
    63793 
    63794 3 models selected 
    63795 
    63796 > select add #2.226
    63797 
    63798 4 models selected 
    63799 
    63800 > select add #2.442
    63801 
    63802 5 models selected 
    63803 
    63804 > select add #2.444
    63805 
    63806 6 models selected 
    63807 
    63808 > select add #2.446
    63809 
    63810 7 models selected 
    63811 
    63812 > select add #2.447
    63813 
    63814 8 models selected 
    63815 
    63816 > select add #2.717
    63817 
    63818 9 models selected 
    63819 
    63820 > select add #2.718
    63821 
    63822 10 models selected 
    63823 
    63824 > select add #2.188
    63825 
    63826 11 models selected 
    63827 
    63828 > select add #2.193
    63829 
    63830 12 models selected 
    63831 
    63832 > select add #2.456
    63833 
    63834 13 models selected 
    63835 
    63836 > select add #2.588
    63837 
    63838 14 models selected 
    63839 
    63840 > select add #2.591
    63841 
    63842 15 models selected 
    63843 
    63844 > select add #2.600
    63845 
    63846 16 models selected 
    63847 
    63848 > select add #2.98
    63849 
    63850 17 models selected 
    63851 
    63852 > select add #2.99
    63853 
    63854 18 models selected 
    63855 Grouped 18 regions 
    63856 Showing 946 region surfaces 
    63857 
    63858 > select add #2.85
    63859 
    63860 2 models selected 
    63861 Grouped 2 regions 
    63862 Opened L0_imasked_imasked_imasked as #9, grid size 250,250,250, pixel 4.3,
    63863 shown at step 1, values float32 
    63864 
    63865 The cached device pixel ratio value was stale on window expose. Please file a
    63866 QTBUG which explains how to reproduce. 
    63867 
    63868 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/PflC.mrc models #9
    63869 
    63870 Opened L0_imasked_imasked_imasked as #10, grid size 250,250,250, pixel 4.3,
    63871 shown at step 1, values float32 
    63872 Segmenting L0_imasked_imasked_imasked, density threshold 0.010668 
    63873 Showing 917 region surfaces 
    63874 9268 watershed regions, grouped to 917 regions 
    63875 Showing L0_imasked_imasked_imasked.seg - 917 regions, 917 surfaces 
    63876 
    63877 > hide #!9 models
    63878 
    63879 > show #!9 models
    63880 
    63881 > select #2.564
    63882 
    63883 1 model selected 
    63884 
    63885 > select add #2.563
    63886 
    63887 2 models selected 
    63888 
    63889 > select add #2.579
    63890 
    63891 3 models selected 
    63892 
    63893 > select add #2.572
    63894 
    63895 4 models selected 
    63896 
    63897 > select add #2.569
    63898 
    63899 5 models selected 
    63900 
    63901 > select add #2.576
    63902 
    63903 6 models selected 
    63904 
    63905 > select add #2.565
    63906 
    63907 7 models selected 
    63908 
    63909 > select add #2.574
    63910 
    63911 8 models selected 
    63912 
    63913 > select add #2.571
    63914 
    63915 9 models selected 
    63916 
    63917 > select add #2.585
    63918 
    63919 10 models selected 
    63920 
    63921 > select add #2.559
    63922 
    63923 11 models selected 
    63924 
    63925 > select add #2.587
    63926 
    63927 12 models selected 
    63928 
    63929 > select add #2.581
    63930 
    63931 13 models selected 
    63932 
    63933 > select add #2.592
    63934 
    63935 14 models selected 
    63936 
    63937 > select add #2.562
    63938 
    63939 15 models selected 
    63940 
    63941 > select add #2.549
    63942 
    63943 16 models selected 
    63944 
    63945 > select add #2.561
    63946 
    63947 17 models selected 
    63948 Grouped 17 regions 
    63949 
    63950 > hide #!9 models
    63951 
    63952 Opened L0_imasked_imasked_imasked_imasked as #11, grid size 250,250,250, pixel
    63953 4.3, shown at step 1, values float32 
    63954 
    63955 The cached device pixel ratio value was stale on window expose. Please file a
    63956 QTBUG which explains how to reproduce. 
    63957 
    63958 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/PflD.mrc models #11
    63959 
    63960 Opened L0_imasked_imasked_imasked_imasked as #12, grid size 250,250,250, pixel
    63961 4.3, shown at step 1, values float32 
    63962 Segmenting L0_imasked_imasked_imasked_imasked, density threshold 0.010668 
    63963 Showing 900 region surfaces 
    63964 9251 watershed regions, grouped to 900 regions 
    63965 Showing L0_imasked_imasked_imasked_imasked.seg - 900 regions, 900 surfaces 
    63966 
    63967 > select #2.112
    63968 
    63969 1 model selected 
    63970 
    63971 > select add #2.110
    63972 
    63973 2 models selected 
    63974 
    63975 > select add #2.155
    63976 
    63977 3 models selected 
    63978 
    63979 > select add #2.142
    63980 
    63981 4 models selected 
    63982 
    63983 > select add #2.138
    63984 
    63985 5 models selected 
    63986 
    63987 > select add #2.253
    63988 
    63989 6 models selected 
    63990 
    63991 > select add #2.103
    63992 
    63993 7 models selected 
    63994 
    63995 > select add #2.165
    63996 
    63997 8 models selected 
    63998 
    63999 > select add #2.145
    64000 
    64001 9 models selected 
    64002 
    64003 > select add #2.136
    64004 
    64005 10 models selected 
    64006 Grouped 10 regions 
    64007 
    64008 > hide #!10 models
    64009 
    64010 > hide #!11 models
    64011 
    64012 > hide #!12 models
    64013 
    64014 > select add #2.428
    64015 
    64016 2 models selected 
    64017 
    64018 > select add #2.382
    64019 
    64020 3 models selected 
    64021 
    64022 > select add #2.101
    64023 
    64024 4 models selected 
    64025 
    64026 > select add #2.166
    64027 
    64028 5 models selected 
    64029 
    64030 > select add #2.121
    64031 
    64032 6 models selected 
    64033 
    64034 > select add #2.510
    64035 
    64036 7 models selected 
    64037 
    64038 > select add #2.424
    64039 
    64040 8 models selected 
    64041 
    64042 > select add #2.488
    64043 
    64044 9 models selected 
    64045 
    64046 > select add #2.519
    64047 
    64048 10 models selected 
    64049 
    64050 > select add #2.394
    64051 
    64052 11 models selected 
    64053 
    64054 > select add #2.77
    64055 
    64056 12 models selected 
    64057 
    64058 > select add #2.105
    64059 
    64060 13 models selected 
    64061 
    64062 > select add #2.160
    64063 
    64064 14 models selected 
    64065 
    64066 > select add #2.109
    64067 
    64068 15 models selected 
    64069 
    64070 > select add #2.182
    64071 
    64072 16 models selected 
    64073 
    64074 > select add #2.422
    64075 
    64076 17 models selected 
    64077 
    64078 > select add #2.460
    64079 
    64080 18 models selected 
    64081 
    64082 > select add #2.477
    64083 
    64084 19 models selected 
    64085 
    64086 > select add #2.176
    64087 
    64088 20 models selected 
    64089 
    64090 > select add #2.576
    64091 
    64092 21 models selected 
    64093 
    64094 > select add #2.94
    64095 
    64096 22 models selected 
    64097 
    64098 > select add #2.386
    64099 
    64100 23 models selected 
    64101 
    64102 > select add #2.106
    64103 
    64104 24 models selected 
    64105 
    64106 > select add #2.122
    64107 
    64108 25 models selected 
    64109 
    64110 > select add #2.139
    64111 
    64112 26 models selected 
    64113 
    64114 > select add #2.113
    64115 
    64116 27 models selected 
    64117 
    64118 > select add #2.87
    64119 
    64120 28 models selected 
    64121 
    64122 > select add #2.192
    64123 
    64124 29 models selected 
    64125 
    64126 > select add #2.111
    64127 
    64128 30 models selected 
    64129 
    64130 > select add #2.126
    64131 
    64132 31 models selected 
    64133 
    64134 > select add #2.71
    64135 
    64136 32 models selected 
    64137 
    64138 > select add #2.67
    64139 
    64140 33 models selected 
    64141 
    64142 > select add #2.41
    64143 
    64144 34 models selected 
    64145 
    64146 > select add #2.123
    64147 
    64148 35 models selected 
    64149 
    64150 > select add #2.148
    64151 
    64152 36 models selected 
    64153 
    64154 > select add #2.193
    64155 
    64156 37 models selected 
    64157 
    64158 > select add #2.404
    64159 
    64160 38 models selected 
    64161 
    64162 > select add #2.197
    64163 
    64164 39 models selected 
    64165 
    64166 > select add #2.196
    64167 
    64168 40 models selected 
    64169 
    64170 > select add #2.190
    64171 
    64172 41 models selected 
    64173 
    64174 > select add #2.169
    64175 
    64176 42 models selected 
    64177 
    64178 > select add #2.278
    64179 
    64180 43 models selected 
    64181 
    64182 > select add #2.634
    64183 
    64184 44 models selected 
    64185 
    64186 > select add #2.189
    64187 
    64188 45 models selected 
    64189 
    64190 > select add #2.537
    64191 
    64192 46 models selected 
    64193 
    64194 > select add #2.239
    64195 
    64196 47 models selected 
    64197 
    64198 > select add #2.313
    64199 
    64200 48 models selected 
    64201 
    64202 > select add #2.689
    64203 
    64204 49 models selected 
    64205 
    64206 > select add #2.173
    64207 
    64208 50 models selected 
    64209 
    64210 > select add #2.164
    64211 
    64212 51 models selected 
    64213 
    64214 > select add #2.302
    64215 
    64216 52 models selected 
    64217 
    64218 > select add #2.181
    64219 
    64220 53 models selected 
    64221 
    64222 > select add #2.177
    64223 
    64224 54 models selected 
    64225 
    64226 > select add #2.174
    64227 
    64228 55 models selected 
    64229 
    64230 > select add #2.156
    64231 
    64232 56 models selected 
    64233 
    64234 > select add #2.408
    64235 
    64236 57 models selected 
    64237 
    64238 > select add #2.346
    64239 
    64240 58 models selected 
    64241 
    64242 > select add #2.180
    64243 
    64244 59 models selected 
    64245 
    64246 > select add #2.124
    64247 
    64248 60 models selected 
    64249 
    64250 > select add #2.207
    64251 
    64252 61 models selected 
    64253 
    64254 > select add #2.503
    64255 
    64256 62 models selected 
    64257 
    64258 > select add #2.443
    64259 
    64260 63 models selected 
    64261 
    64262 > select add #2.282
    64263 
    64264 64 models selected 
    64265 
    64266 > select add #2.602
    64267 
    64268 65 models selected 
    64269 
    64270 > select add #2.401
    64271 
    64272 66 models selected 
    64273 
    64274 > select add #2.331
    64275 
    64276 67 models selected 
    64277 
    64278 > select add #2.269
    64279 
    64280 68 models selected 
    64281 
    64282 > select add #2.195
    64283 
    64284 69 models selected 
    64285 
    64286 > select add #2.586
    64287 
    64288 70 models selected 
    64289 
    64290 > select add #2.558
    64291 
    64292 71 models selected 
    64293 
    64294 > select add #2.298
    64295 
    64296 72 models selected 
    64297 
    64298 > select add #2.221
    64299 
    64300 73 models selected 
    64301 
    64302 > select add #2.479
    64303 
    64304 74 models selected 
    64305 
    64306 > select add #2.625
    64307 
    64308 75 models selected 
    64309 
    64310 > select add #2.262
    64311 
    64312 76 models selected 
    64313 
    64314 > select add #2.535
    64315 
    64316 77 models selected 
    64317 
    64318 > select add #2.660
    64319 
    64320 78 models selected 
    64321 
    64322 > select add #2.450
    64323 
    64324 79 models selected 
    64325 
    64326 > select add #2.161
    64327 
    64328 80 models selected 
    64329 
    64330 > select add #2.661
    64331 
    64332 81 models selected 
    64333 
    64334 > select add #2.399
    64335 
    64336 82 models selected 
    64337 
    64338 > select add #2.521
    64339 
    64340 83 models selected 
    64341 
    64342 > select add #2.255
    64343 
    64344 84 models selected 
    64345 
    64346 > select add #2.297
    64347 
    64348 85 models selected 
    64349 
    64350 > select add #2.179
    64351 
    64352 86 models selected 
    64353 
    64354 > select add #2.406
    64355 
    64356 87 models selected 
    64357 
    64358 > select add #2.413
    64359 
    64360 88 models selected 
    64361 
    64362 > select add #2.261
    64363 
    64364 89 models selected 
    64365 
    64366 > select add #2.526
    64367 
    64368 90 models selected 
    64369 
    64370 > select add #2.590
    64371 
    64372 91 models selected 
    64373 
    64374 > select add #2.525
    64375 
    64376 92 models selected 
    64377 
    64378 > select add #2.250
    64379 
    64380 93 models selected 
    64381 
    64382 > select add #2.529
    64383 
    64384 94 models selected 
    64385 
    64386 > select add #2.266
    64387 
    64388 95 models selected 
    64389 
    64390 > select add #2.599
    64391 
    64392 96 models selected 
    64393 
    64394 > select add #2.459
    64395 
    64396 97 models selected 
    64397 
    64398 > select add #2.186
    64399 
    64400 98 models selected 
    64401 
    64402 > select add #2.426
    64403 
    64404 99 models selected 
    64405 
    64406 > select add #2.191
    64407 
    64408 100 models selected 
    64409 
    64410 > select add #2.421
    64411 
    64412 101 models selected 
    64413 
    64414 > select add #2.326
    64415 
    64416 102 models selected 
    64417 
    64418 > select add #2.385
    64419 
    64420 103 models selected 
    64421 
    64422 > select add #2.163
    64423 
    64424 104 models selected 
    64425 
    64426 > select add #2.396
    64427 
    64428 105 models selected 
    64429 
    64430 > select add #2.354
    64431 
    64432 106 models selected 
    64433 
    64434 > select add #2.457
    64435 
    64436 107 models selected 
    64437 
    64438 > select add #2.621
    64439 
    64440 108 models selected 
    64441 
    64442 > select add #2.380
    64443 
    64444 109 models selected 
    64445 
    64446 > select add #2.225
    64447 
    64448 110 models selected 
    64449 
    64450 > select add #2.317
    64451 
    64452 111 models selected 
    64453 
    64454 > select add #2.184
    64455 
    64456 112 models selected 
    64457 
    64458 > select add #2.361
    64459 
    64460 113 models selected 
    64461 
    64462 > select add #2.387
    64463 
    64464 114 models selected 
    64465 
    64466 > select add #2.199
    64467 
    64468 115 models selected 
    64469 
    64470 > select add #2.336
    64471 
    64472 116 models selected 
    64473 
    64474 > select add #2.447
    64475 
    64476 117 models selected 
    64477 
    64478 > select add #2.158
    64479 
    64480 118 models selected 
    64481 
    64482 > select add #2.411
    64483 
    64484 119 models selected 
    64485 
    64486 > select add #2.570
    64487 
    64488 120 models selected 
    64489 
    64490 > select add #2.468
    64491 
    64492 121 models selected 
    64493 Drag select of 13339, 21 of 52168 triangles, 13401, 16 of 51284 triangles,
    64494 12911, 43 of 17832 triangles, 13455, 31 of 15944 triangles, 5274, 6 of 5364
    64495 triangles, 13542, 59 of 9548 triangles, 12832, 15 of 5244 triangles, 13388, 19
    64496 of 5120 triangles 
    64497 
    64498 > select add #2.275
    64499 
    64500 130 models selected 
    64501 
    64502 > select add #2.449
    64503 
    64504 131 models selected 
    64505 
    64506 > select subtract #2.453
    64507 
    64508 130 models selected 
    64509 
    64510 > select add #2.453
    64511 
    64512 131 models selected 
    64513 
    64514 > select subtract #2.431
    64515 
    64516 130 models selected 
    64517 
    64518 > select subtract #2.6
    64519 
    64520 129 models selected 
    64521 
    64522 > select add #2.431
    64523 
    64524 130 models selected 
    64525 
    64526 > select subtract #2.11
    64527 
    64528 129 models selected 
    64529 
    64530 > select subtract #2.431
    64531 
    64532 128 models selected 
    64533 Showing 891 region surfaces 
    64534 
    64535 > select clear
    64536 
    64537 Drag select of 13304, 37356 of 37380 triangles, 13358, 29953 of 30572
    64538 triangles, 13364, 27403 of 30864 triangles, 13477, 15431 of 26464 triangles,
    64539 13500, 12563, 18598 of 24212 triangles, 13337, 12534, 9841 of 19672 triangles,
    64540 13320, 13483, 19006 of 24376 triangles, 12583, 11018 of 21688 triangles,
    64541 13577, 12820, 12578, 13281, 13282, 13256 of 22308 triangles, 12696, 11405 of
    64542 18696 triangles, 13342, 13467, 13523, 5294 of 18688 triangles, 13619, 172 of
    64543 15900 triangles, 13300, 10414 of 17236 triangles, 13481, 13306, 13406, 13474,
    64544 12556, 12871 of 13420 triangles, 13493, 13353, 15759 of 16180 triangles,
    64545 12785, 11504 of 12336 triangles, 13287, 13646, 13101 of 17524 triangles,
    64546 13568, 8865 of 14668 triangles, 13645, 12531, 3782 of 11396 triangles, 12560,
    64547 13354, 13494, 13366, 12693, 6454 of 11680 triangles, 13565, 13575, 13330,
    64548 13312, 13322, 6210 of 14824 triangles, 13571, 13471, 6337 of 12228 triangles,
    64549 13545, 13405, 6593 of 13360 triangles, 13487, 13925 of 14032 triangles, 13439,
    64550 1596 of 12416 triangles, 13605, 12636, 10955 of 13388 triangles, 13498, 13254,
    64551 13661, 13413, 13352, 8927 of 11472 triangles, 13280, 12846, 13475, 13269, 1910
    64552 of 8804 triangles, 13562, 12491, 13509, 1026 of 8528 triangles, 12524, 11745,
    64553 12688, 13628, 12694, 12810, 13594, 12903, 12508, 12529, 13634, 3876 of 9280
    64554 triangles, 12562, 2194 of 6232 triangles, 12836, 2290 of 7052 triangles,
    64555 13567, 3927 of 8540 triangles, 13464, 12796, 12805, 13485, 11053, 12860,
    64556 12108, 12516, 12832, 13164, 13640, 11070, 11906, 5095 of 5332 triangles,
    64557 11122, 13470, 12808, 13045, 5151 of 5256 triangles, 11511, 11040, 10941,
    64558 13606, 2040 of 5700 triangles, 12690, 1649 of 4968 triangles, 12672, 5485 of
    64559 5508 triangles, 13309, 12766, 12855, 11877, 1846 of 3788 triangles, 11045,
    64560 13187, 13220, 3226 of 4596 triangles, 10924, 4057 of 4156 triangles, 12638,
    64561 12448, 10940, 13031, 12080, 10953, 492, 13681 
    64562 Grouped 118 regions 
    64563 Drag select of 13302, 13283, 12854, 13116, 12819, 11481 
    64564 Grouped 7 regions 
    64565 Showing 768 region surfaces 
    64566 
    64567 > select clear
    64568 
    64569 > select #2.41
    64570 
    64571 1 model selected 
    64572 Opened L0_imasked_imasked_imasked_imasked_imasked as #13, grid size
    64573 250,250,250, pixel 4.3, shown at step 1, values float32 
    64574 Segmenting L0_imasked_imasked_imasked_imasked_imasked, density threshold
    64575 0.010668 
    64576 Showing 768 region surfaces 
    64577 6984 watershed regions, grouped to 768 regions 
    64578 Showing L0_imasked_imasked_imasked_imasked_imasked.seg - 768 regions, 768
    64579 surfaces 
    64580 Drag select of 10178, 10095, 10170, 79 of 56104 triangles, 10052, 71186 of
    64581 71560 triangles, 10000, 10099, 10137, 10139, 10284, 10181, 8323, 4325 of 11168
    64582 triangles, 10093, 3805 of 9260 triangles, 9498, 3311 of 8832 triangles, 10097,
    64583 8337, 1360 of 6568 triangles, 9921, 9250, 998 of 5700 triangles, 10167, 24 of
    64584 5116 triangles, 9387, 62 of 3216 triangles, 9391, 38 of 3016 triangles, 10159,
    64585 10122, 10160, 9997, 10224, 10019, 9400, 10229, 10126, 10132, 10244, 9557,
    64586 10215, 10243, 10311, 10276, 10172, 10087, 10266, 10189, 10207, 9759, 10183,
    64587 9527, 10029, 9406, 9410, 10200, 10098, 10184, 10163, 10202, 9737, 6448, 10114,
    64588 10038, 630 of 1492 triangles, 10130, 536 of 1276 triangles, 10186, 10145,
    64589 9285, 10146, 10064, 10102, 10004, 9005, 10119, 9300, 7598, 8759, 9776, 9293,
    64590 10287, 10055, 10173, 10205, 10109, 9568, 138 of 744 triangles, 10147, 10191,
    64591 392 of 980 triangles, 6916, 10115, 166 of 752 triangles, 6419, 9598, 10124,
    64592 375 of 692 triangles, 5878, 10142, 10112, 248 of 552 triangles, 6557, 10121,
    64593 10106, 127 of 540 triangles, 5883, 10156, 10231, 6650, 5886, 8618, 10316,
    64594 5880, 6606, 10157, 10107, 351 of 452 triangles, 9558, 10162, 10100, 9530,
    64595 6608, 6891, 9653, 10171, 160 of 340 triangles, 6610, 10111, 6607, 10150, 6949,
    64596 96 of 188 triangles, 6787, 9669, 10161, 6752, 9672, 9476, 5898, 6902, 36 of
    64597 180 triangles, 9553, 9123, 10131, 6915, 6743, 6750, 6563, 6623, 6832, 6847,
    64598 10168, 6644, 6913, 6672, 6852, 6849, 6807, 74 of 112 triangles, 6809, 10129,
    64599 6520, 5895, 6638, 6624, 6570, 6579, 6643, 6435, 6605, 6755, 6666, 6747, 6636,
    64600 6838, 52 of 56 triangles, 13 L0_imasked_imasked_imasked_imasked_imasked 
    64601 
    64602 > hide #!13 models
    64603 
    64604 > select subtract #13
    64605 
    64606 155 models selected 
    64607 
    64608 > select add #2.394
    64609 
    64610 156 models selected 
    64611 
    64612 > select add #2.362
    64613 
    64614 157 models selected 
    64615 
    64616 > select add #2.414
    64617 
    64618 158 models selected 
    64619 
    64620 > select add #2.425
    64621 
    64622 159 models selected 
    64623 
    64624 > select add #2.376
    64625 
    64626 160 models selected 
    64627 
    64628 > select add #2.409
    64629 
    64630 161 models selected 
    64631 
    64632 > select add #2.206
    64633 
    64634 162 models selected 
    64635 
    64636 > select add #2.386
    64637 
    64638 163 models selected 
    64639 
    64640 > select add #2.374
    64641 
    64642 164 models selected 
    64643 
    64644 > select add #2.230
    64645 
    64646 165 models selected 
    64647 
    64648 > select add #2.492
    64649 
    64650 166 models selected 
    64651 
    64652 > select add #2.393
    64653 
    64654 167 models selected 
    64655 
    64656 > select add #2.363
    64657 
    64658 168 models selected 
    64659 
    64660 > select add #2.222
    64661 
    64662 169 models selected 
    64663 
    64664 > select add #2.398
    64665 
    64666 170 models selected 
    64667 
    64668 > select add #2.387
    64669 
    64670 171 models selected 
    64671 
    64672 > select add #2.144
    64673 
    64674 172 models selected 
    64675 
    64676 > select add #2.523
    64677 
    64678 173 models selected 
    64679 
    64680 > select add #2.396
    64681 
    64682 174 models selected 
    64683 
    64684 > select add #2.460
    64685 
    64686 175 models selected 
    64687 
    64688 > select add #2.339
    64689 
    64690 176 models selected 
    64691 
    64692 > select add #2.350
    64693 
    64694 177 models selected 
    64695 
    64696 > select add #2.427
    64697 
    64698 178 models selected 
    64699 
    64700 > select add #2.385
    64701 
    64702 179 models selected 
    64703 
    64704 > select add #2.364
    64705 
    64706 180 models selected 
    64707 
    64708 > select add #2.499
    64709 
    64710 181 models selected 
    64711 
    64712 > select add #2.451
    64713 
    64714 182 models selected 
    64715 
    64716 > select add #2.449
    64717 
    64718 183 models selected 
    64719 
    64720 > select add #2.218
    64721 
    64722 184 models selected 
    64723 
    64724 > select add #2.384
    64725 
    64726 185 models selected 
    64727 
    64728 > select add #2.391
    64729 
    64730 186 models selected 
    64731 
    64732 > select subtract #2.391
    64733 
    64734 185 models selected 
    64735 
    64736 > select add #2.314
    64737 
    64738 186 models selected 
    64739 
    64740 > select add #2.391
    64741 
    64742 187 models selected 
    64743 
    64744 > select add #2.435
    64745 
    64746 188 models selected 
    64747 
    64748 > select add #2.380
    64749 
    64750 189 models selected 
    64751 
    64752 > select add #2.397
    64753 
    64754 190 models selected 
    64755 
    64756 > select add #2.16
    64757 
    64758 191 models selected 
    64759 Grouped 191 regions 
    64760 
    64761 > select add #2.156
    64762 
    64763 2 models selected 
    64764 
    64765 > select add #2.160
    64766 
    64767 3 models selected 
    64768 
    64769 > select add #2.148
    64770 
    64771 4 models selected 
    64772 
    64773 > select add #2.161
    64774 
    64775 5 models selected 
    64776 
    64777 > select add #2.162
    64778 
    64779 6 models selected 
    64780 
    64781 > select add #2.152
    64782 
    64783 7 models selected 
    64784 
    64785 > select add #2.154
    64786 
    64787 8 models selected 
    64788 
    64789 > select add #2.165
    64790 
    64791 9 models selected 
    64792 
    64793 > select add #2.170
    64794 
    64795 10 models selected 
    64796 
    64797 > select add #2.155
    64798 
    64799 11 models selected 
    64800 
    64801 > select add #2.159
    64802 
    64803 12 models selected 
    64804 
    64805 > select add #2.164
    64806 
    64807 13 models selected 
    64808 
    64809 > select add #2.158
    64810 
    64811 14 models selected 
    64812 
    64813 > select add #2.157
    64814 
    64815 15 models selected 
    64816 
    64817 > select add #2.153
    64818 
    64819 16 models selected 
    64820 
    64821 > select add #2.151
    64822 
    64823 17 models selected 
    64824 
    64825 > select add #2.163
    64826 
    64827 18 models selected 
    64828 Grouped 18 regions 
    64829 
    64830 > select add #2.90
    64831 
    64832 2 models selected 
    64833 
    64834 > select add #2.72
    64835 
    64836 3 models selected 
    64837 
    64838 > select add #2.80
    64839 
    64840 4 models selected 
    64841 
    64842 > select add #2.73
    64843 
    64844 5 models selected 
    64845 
    64846 > select add #2.93
    64847 
    64848 6 models selected 
    64849 
    64850 > select add #2.97
    64851 
    64852 7 models selected 
    64853 
    64854 > select add #2.92
    64855 
    64856 8 models selected 
    64857 
    64858 > select add #2.96
    64859 
    64860 9 models selected 
    64861 
    64862 > select add #2.74
    64863 
    64864 10 models selected 
    64865 
    64866 > select add #2.78
    64867 
    64868 11 models selected 
    64869 
    64870 > select add #2.81
    64871 
    64872 12 models selected 
    64873 
    64874 > select add #2.77
    64875 
    64876 13 models selected 
    64877 
    64878 > select add #2.79
    64879 
    64880 14 models selected 
    64881 
    64882 > select add #2.88
    64883 
    64884 15 models selected 
    64885 
    64886 > select add #2.86
    64887 
    64888 16 models selected 
    64889 
    64890 > select add #2.85
    64891 
    64892 17 models selected 
    64893 
    64894 > select add #2.89
    64895 
    64896 18 models selected 
    64897 
    64898 > select add #2.122
    64899 
    64900 19 models selected 
    64901 
    64902 > select add #2.121
    64903 
    64904 20 models selected 
    64905 
    64906 > select add #2.124
    64907 
    64908 21 models selected 
    64909 
    64910 > select add #2.109
    64911 
    64912 22 models selected 
    64913 
    64914 > select add #2.102
    64915 
    64916 23 models selected 
    64917 
    64918 > select add #2.111
    64919 
    64920 24 models selected 
    64921 
    64922 > select add #2.103
    64923 
    64924 25 models selected 
    64925 
    64926 > select add #2.120
    64927 
    64928 26 models selected 
    64929 
    64930 > select add #2.127
    64931 
    64932 27 models selected 
    64933 
    64934 > select add #2.118
    64935 
    64936 28 models selected 
    64937 
    64938 > select add #2.117
    64939 
    64940 29 models selected 
    64941 
    64942 > select add #2.123
    64943 
    64944 30 models selected 
    64945 
    64946 > select add #2.113
    64947 
    64948 31 models selected 
    64949 
    64950 > select add #2.112
    64951 
    64952 32 models selected 
    64953 
    64954 > select add #2.116
    64955 
    64956 33 models selected 
    64957 
    64958 > select add #2.110
    64959 
    64960 34 models selected 
    64961 
    64962 > select add #2.115
    64963 
    64964 35 models selected 
    64965 Grouped 35 regions 
    64966 
    64967 > select add #2.3
    64968 
    64969 2 models selected 
    64970 
    64971 > select add #2.43
    64972 
    64973 3 models selected 
    64974 
    64975 > select add #2.40
    64976 
    64977 4 models selected 
    64978 
    64979 > select add #2.46
    64980 
    64981 5 models selected 
    64982 
    64983 > select add #2.49
    64984 
    64985 6 models selected 
    64986 
    64987 > select add #2.45
    64988 
    64989 7 models selected 
    64990 
    64991 > select add #2.55
    64992 
    64993 8 models selected 
    64994 
    64995 > select add #2.36
    64996 
    64997 9 models selected 
    64998 
    64999 > select add #2.59
    65000 
    65001 10 models selected 
    65002 
    65003 > select add #2.35
    65004 
    65005 11 models selected 
    65006 
    65007 > select add #2.38
    65008 
    65009 12 models selected 
    65010 
    65011 > select add #2.34
    65012 
    65013 13 models selected 
    65014 
    65015 > select add #2.50
    65016 
    65017 14 models selected 
    65018 
    65019 > select add #2.32
    65020 
    65021 15 models selected 
    65022 
    65023 > select add #2.47
    65024 
    65025 16 models selected 
    65026 
    65027 > select add #2.53
    65028 
    65029 17 models selected 
    65030 
    65031 > select add #2.41
    65032 
    65033 18 models selected 
    65034 
    65035 > select add #2.44
    65036 
    65037 19 models selected 
    65038 
    65039 > select add #2.294
    65040 
    65041 20 models selected 
    65042 
    65043 > select add #2.183
    65044 
    65045 21 models selected 
    65046 
    65047 > select add #2.296
    65048 
    65049 22 models selected 
    65050 
    65051 > select add #2.191
    65052 
    65053 23 models selected 
    65054 
    65055 > select add #2.310
    65056 
    65057 24 models selected 
    65058 
    65059 > select add #2.221
    65060 
    65061 25 models selected 
    65062 
    65063 > select subtract #2.221
    65064 
    65065 24 models selected 
    65066 
    65067 > select add #2.184
    65068 
    65069 25 models selected 
    65070 
    65071 > select add #2.221
    65072 
    65073 26 models selected 
    65074 
    65075 > select add #2.214
    65076 
    65077 27 models selected 
    65078 
    65079 > select add #2.301
    65080 
    65081 28 models selected 
    65082 
    65083 > select add #2.194
    65084 
    65085 29 models selected 
    65086 
    65087 > select add #2.288
    65088 
    65089 30 models selected 
    65090 
    65091 > select add #2.220
    65092 
    65093 31 models selected 
    65094 
    65095 > select add #2.229
    65096 
    65097 32 models selected 
    65098 
    65099 > select add #2.210
    65100 
    65101 33 models selected 
    65102 
    65103 > select add #2.198
    65104 
    65105 34 models selected 
    65106 
    65107 > select add #2.285
    65108 
    65109 35 models selected 
    65110 
    65111 > select add #2.196
    65112 
    65113 36 models selected 
    65114 
    65115 > select add #2.37
    65116 
    65117 37 models selected 
    65118 
    65119 > select add #2.75
    65120 
    65121 38 models selected 
    65122 
    65123 > select add #2.61
    65124 
    65125 39 models selected 
    65126 
    65127 > select add #2.64
    65128 
    65129 40 models selected 
    65130 
    65131 > select add #2.56
    65132 
    65133 41 models selected 
    65134 
    65135 > select add #2.66
    65136 
    65137 42 models selected 
    65138 
    65139 > select add #2.54
    65140 
    65141 43 models selected 
    65142 
    65143 > select add #2.63
    65144 
    65145 44 models selected 
    65146 
    65147 > select add #2.71
    65148 
    65149 45 models selected 
    65150 
    65151 > select add #2.67
    65152 
    65153 46 models selected 
    65154 
    65155 > select add #2.62
    65156 
    65157 47 models selected 
    65158 
    65159 > select add #2.68
    65160 
    65161 48 models selected 
    65162 
    65163 > select add #2.51
    65164 
    65165 49 models selected 
    65166 
    65167 > select add #2.39
    65168 
    65169 50 models selected 
    65170 
    65171 > select add #2.52
    65172 
    65173 51 models selected 
    65174 
    65175 > select add #2.76
    65176 
    65177 52 models selected 
    65178 
    65179 > select add #2.58
    65180 
    65181 53 models selected 
    65182 
    65183 > select add #2.185
    65184 
    65185 54 models selected 
    65186 
    65187 > select add #2.186
    65188 
    65189 55 models selected 
    65190 
    65191 > select add #2.188
    65192 
    65193 56 models selected 
    65194 
    65195 > select add #2.173
    65196 
    65197 57 models selected 
    65198 
    65199 > select add #2.179
    65200 
    65201 58 models selected 
    65202 
    65203 > select add #2.177
    65204 
    65205 59 models selected 
    65206 
    65207 > select add #2.180
    65208 
    65209 60 models selected 
    65210 
    65211 > select add #2.190
    65212 
    65213 61 models selected 
    65214 
    65215 > select add #2.182
    65216 
    65217 62 models selected 
    65218 
    65219 > select add #2.150
    65220 
    65221 63 models selected 
    65222 
    65223 > select add #2.181
    65224 
    65225 64 models selected 
    65226 
    65227 > select add #2.172
    65228 
    65229 65 models selected 
    65230 
    65231 > select add #2.171
    65232 
    65233 66 models selected 
    65234 
    65235 > select add #2.146
    65236 
    65237 67 models selected 
    65238 
    65239 > select add #2.200
    65240 
    65241 68 models selected 
    65242 
    65243 > select add #2.189
    65244 
    65245 69 models selected 
    65246 
    65247 > select add #2.192
    65248 
    65249 70 models selected 
    65250 
    65251 > select add #2.249
    65252 
    65253 71 models selected 
    65254 
    65255 > select add #2.265
    65256 
    65257 72 models selected 
    65258 
    65259 > select add #2.266
    65260 
    65261 73 models selected 
    65262 
    65263 > select add #2.234
    65264 
    65265 74 models selected 
    65266 
    65267 > select add #2.228
    65268 
    65269 75 models selected 
    65270 
    65271 > select add #2.291
    65272 
    65273 76 models selected 
    65274 
    65275 > select add #2.255
    65276 
    65277 77 models selected 
    65278 
    65279 > select add #2.224
    65280 
    65281 78 models selected 
    65282 
    65283 > select add #2.258
    65284 
    65285 79 models selected 
    65286 
    65287 > select add #2.280
    65288 
    65289 80 models selected 
    65290 
    65291 > select add #2.243
    65292 
    65293 81 models selected 
    65294 
    65295 > select add #2.283
    65296 
    65297 82 models selected 
    65298 
    65299 > select add #2.290
    65300 
    65301 83 models selected 
    65302 
    65303 > select add #2.223
    65304 
    65305 84 models selected 
    65306 
    65307 > select add #2.275
    65308 
    65309 85 models selected 
    65310 
    65311 > select add #2.226
    65312 
    65313 86 models selected 
    65314 
    65315 > select add #2.254
    65316 
    65317 87 models selected 
    65318 
    65319 > select add #2.279
    65320 
    65321 88 models selected 
    65322 
    65323 > select add #2.231
    65324 
    65325 89 models selected 
    65326 
    65327 > select add #2.241
    65328 
    65329 90 models selected 
    65330 
    65331 > select add #2.244
    65332 
    65333 91 models selected 
    65334 
    65335 > select add #2.289
    65336 
    65337 92 models selected 
    65338 
    65339 > select add #2.211
    65340 
    65341 93 models selected 
    65342 
    65343 > select add #2.287
    65344 
    65345 94 models selected 
    65346 
    65347 > select add #2.263
    65348 
    65349 95 models selected 
    65350 
    65351 > select add #2.260
    65352 
    65353 96 models selected 
    65354 
    65355 > select add #2.236
    65356 
    65357 97 models selected 
    65358 
    65359 > select add #2.257
    65360 
    65361 98 models selected 
    65362 
    65363 > select add #2.292
    65364 
    65365 99 models selected 
    65366 
    65367 > select add #2.235
    65368 
    65369 100 models selected 
    65370 
    65371 > select add #2.237
    65372 
    65373 101 models selected 
    65374 
    65375 > select add #2.269
    65376 
    65377 102 models selected 
    65378 
    65379 > select add #2.262
    65380 
    65381 103 models selected 
    65382 
    65383 > select add #2.232
    65384 
    65385 104 models selected 
    65386 
    65387 > select add #2.84
    65388 
    65389 105 models selected 
    65390 
    65391 > select add #2.100
    65392 
    65393 106 models selected 
    65394 
    65395 > select add #2.94
    65396 
    65397 107 models selected 
    65398 
    65399 > select add #2.57
    65400 
    65401 108 models selected 
    65402 
    65403 > select add #2.315
    65404 
    65405 109 models selected 
    65406 
    65407 > select add #2.335
    65408 
    65409 110 models selected 
    65410 
    65411 > select add #2.166
    65412 
    65413 111 models selected 
    65414 
    65415 > select add #2.82
    65416 
    65417 112 models selected 
    65418 
    65419 > select add #2.91
    65420 
    65421 113 models selected 
    65422 
    65423 > select add #2.65
    65424 
    65425 114 models selected 
    65426 
    65427 > select add #2.322
    65428 
    65429 115 models selected 
    65430 
    65431 > select add #2.99
    65432 
    65433 116 models selected 
    65434 
    65435 > select add #2.125
    65436 
    65437 117 models selected 
    65438 
    65439 > select add #2.31
    65440 
    65441 118 models selected 
    65442 
    65443 > select add #2.129
    65444 
    65445 119 models selected 
    65446 
    65447 > select add #2.205
    65448 
    65449 120 models selected 
    65450 
    65451 > select add #2.69
    65452 
    65453 121 models selected 
    65454 
    65455 > select add #2.114
    65456 
    65457 122 models selected 
    65458 
    65459 > select add #2.135
    65460 
    65461 123 models selected 
    65462 
    65463 > select add #2.119
    65464 
    65465 124 models selected 
    65466 
    65467 > select add #2.495
    65468 
    65469 125 models selected 
    65470 
    65471 > select add #2.98
    65472 
    65473 126 models selected 
    65474 
    65475 > select add #2.197
    65476 
    65477 127 models selected 
    65478 
    65479 > select add #2.105
    65480 
    65481 128 models selected 
    65482 
    65483 > select add #2.134
    65484 
    65485 129 models selected 
    65486 
    65487 > select add #2.104
    65488 
    65489 130 models selected 
    65490 
    65491 > select add #2.187
    65492 
    65493 131 models selected 
    65494 
    65495 > select subtract #2.187
    65496 
    65497 130 models selected 
    65498 
    65499 > select add #2.187
    65500 
    65501 131 models selected 
    65502 
    65503 > select add #2.278
    65504 
    65505 132 models selected 
    65506 
    65507 > select add #2.87
    65508 
    65509 133 models selected 
    65510 
    65511 > select add #2.328
    65512 
    65513 134 models selected 
    65514 
    65515 > select add #2.256
    65516 
    65517 135 models selected 
    65518 Grouped 135 regions 
    65519 
    65520 > select add #2.277
    65521 
    65522 2 models selected 
    65523 
    65524 > select add #2.297
    65525 
    65526 3 models selected 
    65527 
    65528 > select add #2.307
    65529 
    65530 4 models selected 
    65531 
    65532 > select add #2.251
    65533 
    65534 5 models selected 
    65535 
    65536 > select add #2.274
    65537 
    65538 6 models selected 
    65539 
    65540 > select add #2.252
    65541 
    65542 7 models selected 
    65543 
    65544 > select add #2.282
    65545 
    65546 8 models selected 
    65547 
    65548 > select add #2.286
    65549 
    65550 9 models selected 
    65551 
    65552 > select add #2.239
    65553 
    65554 10 models selected 
    65555 
    65556 > select add #2.253
    65557 
    65558 11 models selected 
    65559 
    65560 > select add #2.273
    65561 
    65562 12 models selected 
    65563 
    65564 > select add #2.281
    65565 
    65566 13 models selected 
    65567 
    65568 > select add #2.272
    65569 
    65570 14 models selected 
    65571 
    65572 > select add #2.259
    65573 
    65574 15 models selected 
    65575 
    65576 > select add #2.299
    65577 
    65578 16 models selected 
    65579 
    65580 > select add #2.267
    65581 
    65582 17 models selected 
    65583 
    65584 > select add #2.240
    65585 
    65586 18 models selected 
    65587 Grouped 18 regions 
    65588 
    65589 > select clear
    65590 
    65591 > select #2.83
    65592 
    65593 1 model selected 
    65594 
    65595 > select add #2.137
    65596 
    65597 2 models selected 
    65598 
    65599 > select add #2.95
    65600 
    65601 3 models selected 
    65602 
    65603 > select add #2.101
    65604 
    65605 4 models selected 
    65606 
    65607 > select add #2.268
    65608 
    65609 5 models selected 
    65610 
    65611 > select add #2.130
    65612 
    65613 6 models selected 
    65614 
    65615 > select add #2.107
    65616 
    65617 7 models selected 
    65618 
    65619 > select add #2.511
    65620 
    65621 8 models selected 
    65622 Grouped 8 regions 
    65623 Showing 369 region surfaces 
    65624 
    65625 > select add #2.1
    65626 
    65627 2 models selected 
    65628 Grouped 2 regions 
    65629 
    65630 > select clear
    65631 
    65632 > select #2.20
    65633 
    65634 1 model selected 
    65635 
    65636 > select add #2.208
    65637 
    65638 2 models selected 
    65639 
    65640 > select add #2.306
    65641 
    65642 3 models selected 
    65643 Drag select of 9578, 14 of 10576 triangles, 9416, 14 of 6092 triangles, 9426,
    65644 6 of 4972 triangles, 10324, 13 of 1743064 triangles 
    65645 
    65646 > select add #2.276
    65647 
    65648 6 models selected 
    65649 
    65650 > select clear
    65651 
    65652 > select #2.264
    65653 
    65654 1 model selected 
    65655 
    65656 > select add #2.139
    65657 
    65658 2 models selected 
    65659 
    65660 > select add #2.106
    65661 
    65662 3 models selected 
    65663 
    65664 > select subtract #2.106
    65665 
    65666 2 models selected 
    65667 
    65668 > select add #2.106
    65669 
    65670 3 models selected 
    65671 
    65672 > select add #2.227
    65673 
    65674 4 models selected 
    65675 
    65676 > select add #2.126
    65677 
    65678 5 models selected 
    65679 
    65680 > select add #2.217
    65681 
    65682 6 models selected 
    65683 
    65684 > select add #2.250
    65685 
    65686 7 models selected 
    65687 
    65688 > select add #2.176
    65689 
    65690 8 models selected 
    65691 
    65692 > select add #2.333
    65693 
    65694 9 models selected 
    65695 
    65696 > select add #2.128
    65697 
    65698 10 models selected 
    65699 
    65700 > select add #2.138
    65701 
    65702 11 models selected 
    65703 
    65704 > select add #2.141
    65705 
    65706 12 models selected 
    65707 Grouped 12 regions 
    65708 
    65709 > select #2.1
    65710 
    65711 1 model selected 
    65712 
    65713 > select add #2.12
    65714 
    65715 2 models selected 
    65716 
    65717 > select add #2.30
    65718 
    65719 3 models selected 
    65720 
    65721 > select add #2.17
    65722 
    65723 4 models selected 
    65724 
    65725 > select add #2.24
    65726 
    65727 5 models selected 
    65728 
    65729 > select add #2.25
    65730 
    65731 6 models selected 
    65732 
    65733 > select add #2.4
    65734 
    65735 7 models selected 
    65736 
    65737 > select add #2.29
    65738 
    65739 8 models selected 
    65740 
    65741 > select add #2.19
    65742 
    65743 9 models selected 
    65744 
    65745 > select add #2.26
    65746 
    65747 10 models selected 
    65748 
    65749 > select add #2.28
    65750 
    65751 11 models selected 
    65752 
    65753 > select add #2.14
    65754 
    65755 12 models selected 
    65756 
    65757 > select add #2.7
    65758 
    65759 13 models selected 
    65760 
    65761 > select add #2.21
    65762 
    65763 14 models selected 
    65764 
    65765 > select add #2.27
    65766 
    65767 15 models selected 
    65768 
    65769 > select add #2.22
    65770 
    65771 16 models selected 
    65772 
    65773 > select add #2.9
    65774 
    65775 17 models selected 
    65776 
    65777 > select add #2.13
    65778 
    65779 18 models selected 
    65780 
    65781 > select add #2.11
    65782 
    65783 19 models selected 
    65784 
    65785 > select add #2.6
    65786 
    65787 20 models selected 
    65788 
    65789 > select add #2.10
    65790 
    65791 21 models selected 
    65792 
    65793 > select add #2.8
    65794 
    65795 22 models selected 
    65796 
    65797 > select add #2.23
    65798 
    65799 23 models selected 
    65800 
    65801 > select add #2.20
    65802 
    65803 24 models selected 
    65804 Grouped 24 regions 
    65805 
    65806 > select clear
    65807 
    65808 > select #2.1
    65809 
    65810 1 model selected 
    65811 Showing 334 region surfaces 
    65812 Opened L0_imasked_imasked_imasked_imasked_imasked_imasked as #14, grid size
    65813 250,250,250, pixel 4.3, shown at step 1, values float32 
    65814 Segmenting L0_imasked_imasked_imasked_imasked_imasked_imasked, density
    65815 threshold 0.010668 
    65816 Showing 425 region surfaces 
    65817 3855 watershed regions, grouped to 425 regions 
    65818 Showing L0_imasked_imasked_imasked_imasked_imasked_imasked.seg - 425 regions,
    65819 425 surfaces 
    65820 
    65821 > select #2.14
    65822 
    65823 1 model selected 
    65824 
    65825 > select add #2.7
    65826 
    65827 2 models selected 
    65828 
    65829 > select add #2.21
    65830 
    65831 3 models selected 
    65832 
    65833 > select add #2.22
    65834 
    65835 4 models selected 
    65836 
    65837 > select add #2.9
    65838 
    65839 5 models selected 
    65840 
    65841 > select add #2.13
    65842 
    65843 6 models selected 
    65844 
    65845 > select add #2.11
    65846 
    65847 7 models selected 
    65848 
    65849 > select add #2.6
    65850 
    65851 8 models selected 
    65852 
    65853 > select add #2.10
    65854 
    65855 9 models selected 
    65856 
    65857 > select add #2.8
    65858 
    65859 10 models selected 
    65860 
    65861 > select add #2.5
    65862 
    65863 11 models selected 
    65864 
    65865 > select add #2.12
    65866 
    65867 12 models selected 
    65868 
    65869 > select add #2.17
    65870 
    65871 13 models selected 
    65872 
    65873 > select add #2.25
    65874 
    65875 14 models selected 
    65876 
    65877 > select add #2.4
    65878 
    65879 15 models selected 
    65880 
    65881 > select add #2.19
    65882 
    65883 16 models selected 
    65884 
    65885 > select add #2.28
    65886 
    65887 17 models selected 
    65888 Ungrouped to 63 regions 
    65889 
    65890 > select clear
    65891 
    65892 > select #2.478
    65893 
    65894 1 model selected 
    65895 
    65896 > select add #2.477
    65897 
    65898 2 models selected 
    65899 
    65900 > select #2.477
    65901 
    65902 1 model selected 
    65903 Ungrouped to 5 regions 
    65904 
    65905 > select clear
    65906 
    65907 > select #2.7
    65908 
    65909 1 model selected 
    65910 
    65911 > select add #2.478
    65912 
    65913 2 models selected 
    65914 
    65915 > hide #!14 models
    65916 
    65917 Grouped 2 regions 
    65918 
    65919 > select #2.443
    65920 
    65921 1 model selected 
    65922 
    65923 > select add #2.444
    65924 
    65925 2 models selected 
    65926 Ungrouped to 7 regions 
    65927 
    65928 > select clear
    65929 
    65930 > select #2.11
    65931 
    65932 1 model selected 
    65933 
    65934 > select add #2.9
    65935 
    65936 2 models selected 
    65937 
    65938 > select add #2.12
    65939 
    65940 3 models selected 
    65941 
    65942 > select add #2.7
    65943 
    65944 4 models selected 
    65945 Grouped 4 regions 
    65946 
    65947 > select #2.436
    65948 
    65949 1 model selected 
    65950 
    65951 > select #2.435
    65952 
    65953 1 model selected 
    65954 Ungrouped to 7 regions 
    65955 
    65956 > select clear
    65957 
    65958 > select #2.19
    65959 
    65960 1 model selected 
    65961 
    65962 > select add #2.436
    65963 
    65964 2 models selected 
    65965 
    65966 > select add #2.7
    65967 
    65968 3 models selected 
    65969 Grouped 3 regions 
    65970 
    65971 > select #2.486
    65972 
    65973 1 model selected 
    65974 Ungrouped to 4 regions 
    65975 
    65976 > select #2.435
    65977 
    65978 1 model selected 
    65979 
    65980 > select add #2.488
    65981 
    65982 2 models selected 
    65983 
    65984 > select add #2.7
    65985 
    65986 3 models selected 
    65987 Grouped 3 regions 
    65988 
    65989 > select #2.453
    65990 
    65991 1 model selected 
    65992 Ungrouped to 6 regions 
    65993 
    65994 > select clear
    65995 
    65996 > select #2.486
    65997 
    65998 1 model selected 
    65999 
    66000 > select add #2.452
    66001 
    66002 2 models selected 
    66003 
    66004 > select add #2.7
    66005 
    66006 3 models selected 
    66007 Grouped 3 regions 
    66008 
    66009 > select #2.467
    66010 
    66011 1 model selected 
    66012 
    66013 > select add #2.466
    66014 
    66015 2 models selected 
    66016 
    66017 > select add #2.7
    66018 
    66019 3 models selected 
    66020 Grouped 3 regions 
    66021 
    66022 > select #2.469
    66023 
    66024 1 model selected 
    66025 
    66026 > select add #2.470
    66027 
    66028 2 models selected 
    66029 
    66030 > select #2.470
    66031 
    66032 1 model selected 
    66033 Ungrouped to 6 regions 
    66034 
    66035 > select #2.488
    66036 
    66037 1 model selected 
    66038 
    66039 > select add #2.469
    66040 
    66041 2 models selected 
    66042 
    66043 > select add #2.7
    66044 
    66045 3 models selected 
    66046 
    66047 > select clear
    66048 
    66049 > select #2.469
    66050 
    66051 1 model selected 
    66052 
    66053 > select add #2.488
    66054 
    66055 2 models selected 
    66056 Grouped 2 regions 
    66057 
    66058 > select #2.428
    66059 
    66060 1 model selected 
    66061 
    66062 > select add #2.429
    66063 
    66064 2 models selected 
    66065 
    66066 > select #2.429
    66067 
    66068 1 model selected 
    66069 Ungrouped to 4 regions 
    66070 
    66071 > select clear
    66072 
    66073 > select #2.470
    66074 
    66075 1 model selected 
    66076 
    66077 > select add #2.428
    66078 
    66079 2 models selected 
    66080 Grouped 2 regions 
    66081 
    66082 > select #2.475
    66083 
    66084 1 model selected 
    66085 
    66086 > select #2.474
    66087 
    66088 1 model selected 
    66089 Ungrouped to 5 regions 
    66090 
    66091 > select clear
    66092 
    66093 > select #2.493
    66094 
    66095 1 model selected 
    66096 
    66097 > select add #2.475
    66098 
    66099 2 models selected 
    66100 Grouped 2 regions 
    66101 
    66102 > select #2.483
    66103 
    66104 1 model selected 
    66105 Ungrouped to 5 regions 
    66106 
    66107 > select clear
    66108 
    66109 > select #2.494
    66110 
    66111 1 model selected 
    66112 
    66113 > select add #2.482
    66114 
    66115 2 models selected 
    66116 Grouped 2 regions 
    66117 
    66118 > select #2.460
    66119 
    66120 1 model selected 
    66121 
    66122 > select add #2.456
    66123 
    66124 2 models selected 
    66125 
    66126 > select clear
    66127 
    66128 > select #2.456
    66129 
    66130 1 model selected 
    66131 Ungrouped to 6 regions 
    66132 
    66133 > select clear
    66134 
    66135 > select #2.499
    66136 
    66137 1 model selected 
    66138 
    66139 > select add #2.460
    66140 
    66141 2 models selected 
    66142 Grouped 2 regions 
    66143 
    66144 > select clear
    66145 
    66146 > select #2.446
    66147 
    66148 1 model selected 
    66149 
    66150 > select #2.445
    66151 
    66152 1 model selected 
    66153 Ungrouped to 6 regions 
    66154 
    66155 > select clear
    66156 
    66157 > select #2.501
    66158 
    66159 1 model selected 
    66160 
    66161 > select add #2.446
    66162 
    66163 2 models selected 
    66164 Grouped 2 regions 
    66165 
    66166 > select #2.438
    66167 
    66168 1 model selected 
    66169 
    66170 > select add #2.434
    66171 
    66172 2 models selected 
    66173 
    66174 > select add #2.442
    66175 
    66176 3 models selected 
    66177 
    66178 > select add #2.447
    66179 
    66180 4 models selected 
    66181 
    66182 > select add #2.454
    66183 
    66184 5 models selected 
    66185 Ungrouped to 22 regions 
    66186 
    66187 > select clear
    66188 
    66189 > select #2.516
    66190 
    66191 1 model selected 
    66192 
    66193 > select add #2.520
    66194 
    66195 2 models selected 
    66196 
    66197 > select add #2.437
    66198 
    66199 3 models selected 
    66200 Grouped 3 regions 
    66201 
    66202 > select clear
    66203 
    66204 > select add #2.430
    66205 
    66206 1 model selected 
    66207 
    66208 > select add #2.434
    66209 
    66210 2 models selected 
    66211 
    66212 > select add #2.441
    66213 
    66214 3 models selected 
    66215 
    66216 > select add #2.501
    66217 
    66218 4 models selected 
    66219 
    66220 > select add #2.448
    66221 
    66222 5 models selected 
    66223 
    66224 > select add #2.509
    66225 
    66226 6 models selected 
    66227 
    66228 > select add #2.455
    66229 
    66230 7 models selected 
    66231 
    66232 > select add #2.524
    66233 
    66234 8 models selected 
    66235 Grouped 8 regions 
    66236 
    66237 > select clear
    66238 
    66239 > select #2.430
    66240 
    66241 1 model selected 
    66242 
    66243 > select add #2.7
    66244 
    66245 2 models selected 
    66246 
    66247 > select add #2.469
    66248 
    66249 3 models selected 
    66250 
    66251 > select add #2.428
    66252 
    66253 4 models selected 
    66254 
    66255 > select add #2.474
    66256 
    66257 5 models selected 
    66258 
    66259 > select add #2.482
    66260 
    66261 6 models selected 
    66262 
    66263 > select add #2.456
    66264 
    66265 7 models selected 
    66266 
    66267 > select add #2.445
    66268 
    66269 8 models selected 
    66270 
    66271 > select #2.430
    66272 
    66273 1 model selected 
    66274 
    66275 > select #2.428
    66276 
    66277 1 model selected 
    66278 
    66279 > select clear
    66280 
    66281 > select #2.428
    66282 
    66283 1 model selected 
    66284 
    66285 > select add #2.7
    66286 
    66287 2 models selected 
    66288 
    66289 > select add #2.482
    66290 
    66291 3 models selected 
    66292 
    66293 > select add #2.456
    66294 
    66295 4 models selected 
    66296 
    66297 > select add #2.445
    66298 
    66299 5 models selected 
    66300 
    66301 > select add #2.430
    66302 
    66303 6 models selected 
    66304 Ungrouped to 19 regions 
    66305 
    66306 > select #2.527
    66307 
    66308 1 model selected 
    66309 
    66310 > select add #2.501
    66311 
    66312 2 models selected 
    66313 
    66314 > select add #2.524
    66315 
    66316 3 models selected 
    66317 
    66318 > select add #2.528
    66319 
    66320 4 models selected 
    66321 
    66322 > select add #2.516
    66323 
    66324 5 models selected 
    66325 
    66326 > select add #2.434
    66327 
    66328 6 models selected 
    66329 Ungrouped to 22 regions 
    66330 Ungrouped to 18 regions 
    66331 
    66332 > select clear
    66333 
    66334 > select #2.546
    66335 
    66336 1 model selected 
    66337 
    66338 > select add #2.553
    66339 
    66340 2 models selected 
    66341 
    66342 > select add #2.456
    66343 
    66344 3 models selected 
    66345 
    66346 > select add #2.541
    66347 
    66348 4 models selected 
    66349 
    66350 > select add #2.533
    66351 
    66352 5 models selected 
    66353 
    66354 > select add #2.536
    66355 
    66356 6 models selected 
    66357 
    66358 > select add #2.534
    66359 
    66360 7 models selected 
    66361 
    66362 > select add #2.537
    66363 
    66364 8 models selected 
    66365 
    66366 > select add #2.524
    66367 
    66368 9 models selected 
    66369 
    66370 > select add #2.528
    66371 
    66372 10 models selected 
    66373 
    66374 > select add #2.535
    66375 
    66376 11 models selected 
    66377 
    66378 > select add #2.545
    66379 
    66380 12 models selected 
    66381 
    66382 > select add #2.549
    66383 
    66384 13 models selected 
    66385 
    66386 > select add #2.554
    66387 
    66388 14 models selected 
    66389 
    66390 > select add #2.555
    66391 
    66392 15 models selected 
    66393 
    66394 > select add #2.556
    66395 
    66396 16 models selected 
    66397 
    66398 > select add #2.548
    66399 
    66400 17 models selected 
    66401 
    66402 > select add #2.445
    66403 
    66404 18 models selected 
    66405 Grouped 18 regions 
    66406 Ungrouped to 18 regions 
    66407 
    66408 > select clear
    66409 
    66410 > select #2.430
    66411 
    66412 1 model selected 
    66413 Ungrouped to 0 regions 
    66414 
    66415 > select #2.539
    66416 
    66417 1 model selected 
    66418 Ungrouped to 0 regions 
    66419 
    66420 > select #2.524
    66421 
    66422 1 model selected 
    66423 
    66424 > select add #2.538
    66425 
    66426 2 models selected 
    66427 
    66428 > select add #2.535
    66429 
    66430 3 models selected 
    66431 
    66432 > select add #2.536
    66433 
    66434 4 models selected 
    66435 
    66436 > select add #2.543
    66437 
    66438 5 models selected 
    66439 
    66440 > select add #2.534
    66441 
    66442 6 models selected 
    66443 
    66444 > select add #2.545
    66445 
    66446 7 models selected 
    66447 
    66448 > select add #2.546
    66449 
    66450 8 models selected 
    66451 
    66452 > select add #2.541
    66453 
    66454 9 models selected 
    66455 Drag select of 3903, 24 of 4808 triangles, 1426, 22 of 2176 triangles 
    66456 
    66457 > select clear
    66458 
    66459 > select #2.544
    66460 
    66461 1 model selected 
    66462 
    66463 > select add #2.456
    66464 
    66465 2 models selected 
    66466 
    66467 > select add #2.482
    66468 
    66469 3 models selected 
    66470 
    66471 > select #2.445
    66472 
    66473 1 model selected 
    66474 
    66475 > select add #2.532
    66476 
    66477 2 models selected 
    66478 
    66479 > select add #2.537
    66480 
    66481 3 models selected 
    66482 
    66483 > select add #2.533
    66484 
    66485 4 models selected 
    66486 
    66487 > select add #2.430
    66488 
    66489 5 models selected 
    66490 
    66491 > select clear
    66492 
    66493 > select #2.428
    66494 
    66495 1 model selected 
    66496 
    66497 > select add #2.528
    66498 
    66499 2 models selected 
    66500 
    66501 > select add #2.542
    66502 
    66503 3 models selected 
    66504 
    66505 > select clear
    66506 
    66507 > select #2.539
    66508 
    66509 1 model selected 
    66510 Ungrouped to 0 regions 
    66511 
    66512 > select clear
    66513 
    66514 Drag select of 5545, 5547, 4834, 427, 4420, 4550, 4829, 4840, 3903, 5543,
    66515 45241 of 45264 triangles, 4842, 3920, 4547, 4259, 3891, 269, 603, 443, 5912 of
    66516 6428 triangles, 592, 472, 3955, 418, 559, 346, 520, 379, 431, 365 
    66517 Grouped 28 regions 
    66518 
    66519 > select clear
    66520 
    66521 Showing 523 region surfaces 
    66522 
    66523 > select #2.7
    66524 
    66525 1 model selected 
    66526 Opened L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #15, grid
    66527 size 250,250,250, pixel 4.3, shown at step 1, values float32 
    66528 
    66529 The cached device pixel ratio value was stale on window expose. Please file a
    66530 QTBUG which explains how to reproduce. 
    66531 
    66532 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/PilM.mrc models #15
    66533 
    66534 Opened L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #16, grid
    66535 size 250,250,250, pixel 4.3, shown at step 1, values float32 
    66536 Segmenting L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked, density
    66537 threshold 0.010668 
    66538 Showing 427 region surfaces 
    66539 3773 watershed regions, grouped to 427 regions 
    66540 Showing L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg - 427
    66541 regions, 427 surfaces 
    66542 
    66543 > hide #!15 models
    66544 
    66545 > hide #!16 models
    66546 
    66547 Segmenting L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked, density
    66548 threshold 0.010668 
    66549 Showing 427 region surfaces 
    66550 3773 watershed regions, grouped to 427 regions 
    66551 Showing L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg - 427
    66552 regions, 427 surfaces 
    66553 
    66554 > select #2.16
    66555 
    66556 1 model selected 
    66557 Ungrouped to 6 regions 
    66558 Ungrouped to 13 regions 
    66559 
    66560 > select #2.438
    66561 
    66562 1 model selected 
    66563 
    66564 > select #2.436
    66565 
    66566 1 model selected 
    66567 
    66568 > select add #2.437
    66569 
    66570 2 models selected 
    66571 
    66572 > select add #2.439
    66573 
    66574 3 models selected 
    66575 
    66576 > select add #2.442
    66577 
    66578 4 models selected 
    66579 
    66580 > select add #2.440
    66581 
    66582 5 models selected 
    66583 
    66584 > select add #2.441
    66585 
    66586 6 models selected 
    66587 
    66588 > select add #2.443
    66589 
    66590 7 models selected 
    66591 
    66592 > select add #2.435
    66593 
    66594 8 models selected 
    66595 
    66596 > select add #2.444
    66597 
    66598 9 models selected 
    66599 Grouped 9 regions 
    66600 
    66601 > select clear
    66602 
    66603 > select #2.438
    66604 
    66605 1 model selected 
    66606 
    66607 > select add #2.430
    66608 
    66609 2 models selected 
    66610 
    66611 > select clear
    66612 
    66613 > select #2.108
    66614 
    66615 1 model selected 
    66616 
    66617 > select add #2.85
    66618 
    66619 2 models selected 
    66620 
    66621 > select add #2.133
    66622 
    66623 3 models selected 
    66624 
    66625 > select add #2.97
    66626 
    66627 4 models selected 
    66628 
    66629 > select add #2.292
    66630 
    66631 5 models selected 
    66632 
    66633 > select add #2.103
    66634 
    66635 6 models selected 
    66636 
    66637 > select add #2.223
    66638 
    66639 7 models selected 
    66640 
    66641 > select add #2.129
    66642 
    66643 8 models selected 
    66644 
    66645 > select add #2.428
    66646 
    66647 9 models selected 
    66648 
    66649 > select add #2.16
    66650 
    66651 10 models selected 
    66652 
    66653 > select add #2.434
    66654 
    66655 11 models selected 
    66656 
    66657 > select add #2.445
    66658 
    66659 12 models selected 
    66660 Grouped 12 regions 
    66661 Opened L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
    66662 #17, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    66663 
    66664 The cached device pixel ratio value was stale on window expose. Please file a
    66665 QTBUG which explains how to reproduce. 
    66666 
    66667 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/Exp_ATP.mrc models #17
    66668 
    66669 Opened L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
    66670 #18, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    66671 Segmenting L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    66672 density threshold 0.010668 
    66673 Showing 420 region surfaces 
    66674 3728 watershed regions, grouped to 420 regions 
    66675 Showing L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    66676 - 420 regions, 420 surfaces 
    66677 
    66678 > hide #!17 models
    66679 
    66680 > hide #!18 models
    66681 
    66682 > select #2.98
    66683 
    66684 1 model selected 
    66685 
    66686 > select add #2.66
    66687 
    66688 2 models selected 
    66689 
    66690 > select add #2.91
    66691 
    66692 3 models selected 
    66693 
    66694 > select add #2.83
    66695 
    66696 4 models selected 
    66697 
    66698 > select add #2.58
    66699 
    66700 5 models selected 
    66701 
    66702 > select add #2.148
    66703 
    66704 6 models selected 
    66705 
    66706 > select add #2.94
    66707 
    66708 7 models selected 
    66709 
    66710 > select add #2.245
    66711 
    66712 8 models selected 
    66713 
    66714 > select add #2.248
    66715 
    66716 9 models selected 
    66717 
    66718 > select add #2.99
    66719 
    66720 10 models selected 
    66721 
    66722 > select add #2.84
    66723 
    66724 11 models selected 
    66725 Drag select of 5205, 27 of 18376 triangles, 5023, 42 of 14808 triangles, 5165,
    66726 31 of 13920 triangles, 4664, 32 of 4880 triangles, 5221, 45 of 6280 triangles 
    66727 
    66728 > select add #2.206
    66729 
    66730 15 models selected 
    66731 
    66732 > select add #2.102
    66733 
    66734 16 models selected 
    66735 
    66736 > select add #2.162
    66737 
    66738 17 models selected 
    66739 
    66740 > select add #2.103
    66741 
    66742 18 models selected 
    66743 
    66744 > select add #2.125
    66745 
    66746 19 models selected 
    66747 
    66748 > select add #2.170
    66749 
    66750 20 models selected 
    66751 
    66752 > select add #2.97
    66753 
    66754 21 models selected 
    66755 
    66756 > select add #2.115
    66757 
    66758 22 models selected 
    66759 
    66760 > select add #2.126
    66761 
    66762 23 models selected 
    66763 
    66764 > select add #2.110
    66765 
    66766 24 models selected 
    66767 
    66768 > select add #2.70
    66769 
    66770 25 models selected 
    66771 
    66772 > select add #2.123
    66773 
    66774 26 models selected 
    66775 
    66776 > select add #2.173
    66777 
    66778 27 models selected 
    66779 
    66780 > select add #2.29
    66781 
    66782 28 models selected 
    66783 
    66784 > select add #2.121
    66785 
    66786 29 models selected 
    66787 Grouped 29 regions 
    66788 
    66789 > select add #2.84
    66790 
    66791 2 models selected 
    66792 
    66793 > select add #2.222
    66794 
    66795 3 models selected 
    66796 
    66797 > select add #2.280
    66798 
    66799 4 models selected 
    66800 Grouped 4 regions 
    66801 
    66802 > select #2.161
    66803 
    66804 1 model selected 
    66805 
    66806 > select add #2.163
    66807 
    66808 2 models selected 
    66809 
    66810 > select add #2.152
    66811 
    66812 3 models selected 
    66813 
    66814 > select add #2.154
    66815 
    66816 4 models selected 
    66817 
    66818 > select add #2.153
    66819 
    66820 5 models selected 
    66821 
    66822 > select add #2.155
    66823 
    66824 6 models selected 
    66825 Ungrouped to 13 regions 
    66826 Ungrouped to 2 regions 
    66827 
    66828 > select #2.29
    66829 
    66830 1 model selected 
    66831 Showing 397 region surfaces 
    66832 
    66833 > select clear
    66834 
    66835 > select #2.29
    66836 
    66837 1 model selected 
    66838 
    66839 > select add #2.246
    66840 
    66841 2 models selected 
    66842 Grouped 2 regions 
    66843 
    66844 > select add #2.196
    66845 
    66846 2 models selected 
    66847 
    66848 > select add #2.98
    66849 
    66850 3 models selected 
    66851 
    66852 > select add #2.97
    66853 
    66854 4 models selected 
    66855 
    66856 > select add #2.221
    66857 
    66858 5 models selected 
    66859 
    66860 > select add #2.94
    66861 
    66862 6 models selected 
    66863 
    66864 > select add #2.91
    66865 
    66866 7 models selected 
    66867 
    66868 > select add #2.70
    66869 
    66870 8 models selected 
    66871 
    66872 > select add #2.66
    66873 
    66874 9 models selected 
    66875 
    66876 > select add #2.102
    66877 
    66878 10 models selected 
    66879 
    66880 > select add #2.99
    66881 
    66882 11 models selected 
    66883 
    66884 > select add #2.165
    66885 
    66886 12 models selected 
    66887 
    66888 > select add #2.157
    66889 
    66890 13 models selected 
    66891 
    66892 > select add #2.132
    66893 
    66894 14 models selected 
    66895 
    66896 > select add #2.156
    66897 
    66898 15 models selected 
    66899 
    66900 > select add #2.151
    66901 
    66902 16 models selected 
    66903 
    66904 > select add #2.150
    66905 
    66906 17 models selected 
    66907 
    66908 > select add #2.129
    66909 
    66910 18 models selected 
    66911 
    66912 > select add #2.172
    66913 
    66914 19 models selected 
    66915 
    66916 > select add #2.164
    66917 
    66918 20 models selected 
    66919 
    66920 > select add #2.167
    66921 
    66922 21 models selected 
    66923 
    66924 > select add #2.160
    66925 
    66926 22 models selected 
    66927 
    66928 > select add #2.46
    66929 
    66930 23 models selected 
    66931 
    66932 > select add #2.103
    66933 
    66934 24 models selected 
    66935 
    66936 > select add #2.110
    66937 
    66938 25 models selected 
    66939 
    66940 > select add #2.87
    66941 
    66942 26 models selected 
    66943 
    66944 > select add #2.84
    66945 
    66946 27 models selected 
    66947 
    66948 > select add #2.215
    66949 
    66950 28 models selected 
    66951 
    66952 > select add #2.238
    66953 
    66954 29 models selected 
    66955 
    66956 > select add #2.242
    66957 
    66958 30 models selected 
    66959 
    66960 > select add #2.201
    66961 
    66962 31 models selected 
    66963 
    66964 > select add #2.219
    66965 
    66966 32 models selected 
    66967 
    66968 > select add #2.202
    66969 
    66970 33 models selected 
    66971 
    66972 > select add #2.226
    66973 
    66974 34 models selected 
    66975 
    66976 > select add #2.229
    66977 
    66978 35 models selected 
    66979 
    66980 > select add #2.195
    66981 
    66982 36 models selected 
    66983 
    66984 > select add #2.203
    66985 
    66986 37 models selected 
    66987 
    66988 > select add #2.218
    66989 
    66990 38 models selected 
    66991 
    66992 > select add #2.225
    66993 
    66994 39 models selected 
    66995 
    66996 > select add #2.217
    66997 
    66998 40 models selected 
    66999 
    67000 > select add #2.209
    67001 
    67002 41 models selected 
    67003 
    67004 > select add #2.239
    67005 
    67006 42 models selected 
    67007 Grouped 42 regions 
    67008 
    67009 > select clear
    67010 
    67011 > select #2.68
    67012 
    67013 1 model selected 
    67014 Ungrouped to 2 regions 
    67015 Ungrouped to 6 regions 
    67016 
    67017 > select #2.70
    67018 
    67019 1 model selected 
    67020 
    67021 > select add #2.87
    67022 
    67023 2 models selected 
    67024 Grouped 2 regions 
    67025 
    67026 > select #2.63
    67027 
    67028 1 model selected 
    67029 
    67030 > select add #2.69
    67031 
    67032 2 models selected 
    67033 
    67034 > select add #2.52
    67035 
    67036 3 models selected 
    67037 
    67038 > select add #2.39
    67039 
    67040 4 models selected 
    67041 
    67042 > select add #2.54
    67043 
    67044 5 models selected 
    67045 
    67046 > select add #2.77
    67047 
    67048 6 models selected 
    67049 
    67050 > select add #2.83
    67051 
    67052 7 models selected 
    67053 
    67054 The cached device pixel ratio value was stale on window expose. Please file a
    67055 QTBUG which explains how to reproduce. 
    67056 
    67057 > select add #2.59
    67058 
    67059 8 models selected 
    67060 
    67061 > select subtract #2.83
    67062 
    67063 7 models selected 
    67064 
    67065 > select add #2.37
    67066 
    67067 8 models selected 
    67068 
    67069 > select add #2.76
    67070 
    67071 9 models selected 
    67072 
    67073 > select add #2.62
    67074 
    67075 10 models selected 
    67076 
    67077 > select add #2.65
    67078 
    67079 11 models selected 
    67080 
    67081 > select add #2.53
    67082 
    67083 12 models selected 
    67084 
    67085 > select add #2.67
    67086 
    67087 13 models selected 
    67088 
    67089 > select add #2.56
    67090 
    67091 14 models selected 
    67092 
    67093 > select add #2.64
    67094 
    67095 15 models selected 
    67096 
    67097 > select add #2.72
    67098 
    67099 16 models selected 
    67100 
    67101 > select add #2.46
    67102 
    67103 17 models selected 
    67104 Ungrouped to 46 regions 
    67105 
    67106 > select subtract #2.157
    67107 
    67108 45 models selected 
    67109 
    67110 > select subtract #2.160
    67111 
    67112 44 models selected 
    67113 Ungrouped to 99 regions 
    67114 Ungrouped to 116 regions 
    67115 Ungrouped to 29 regions 
    67116 Ungrouped to 0 regions 
    67117 
    67118 > select #2.148
    67119 
    67120 1 model selected 
    67121 
    67122 > select add #2.565
    67123 
    67124 2 models selected 
    67125 
    67126 > select add #2.566
    67127 
    67128 3 models selected 
    67129 
    67130 > select add #2.440
    67131 
    67132 4 models selected 
    67133 
    67134 > select add #2.439
    67135 
    67136 5 models selected 
    67137 
    67138 > select add #2.157
    67139 
    67140 6 models selected 
    67141 
    67142 > select add #2.160
    67143 
    67144 7 models selected 
    67145 
    67146 > select add #2.115
    67147 
    67148 8 models selected 
    67149 
    67150 > select add #2.123
    67151 
    67152 9 models selected 
    67153 
    67154 > select add #2.126
    67155 
    67156 10 models selected 
    67157 
    67158 > select add #2.53
    67159 
    67160 11 models selected 
    67161 
    67162 > select add #2.52
    67163 
    67164 12 models selected 
    67165 
    67166 > select add #2.422
    67167 
    67168 13 models selected 
    67169 
    67170 > select add #2.568
    67171 
    67172 14 models selected 
    67173 
    67174 > select add #2.567
    67175 
    67176 15 models selected 
    67177 
    67178 > select add #2.91
    67179 
    67180 16 models selected 
    67181 
    67182 > select add #2.84
    67183 
    67184 17 models selected 
    67185 
    67186 > select add #2.221
    67187 
    67188 18 models selected 
    67189 
    67190 > select add #2.226
    67191 
    67192 19 models selected 
    67193 
    67194 > select add #2.129
    67195 
    67196 20 models selected 
    67197 
    67198 > select add #2.56
    67199 
    67200 21 models selected 
    67201 
    67202 > select add #2.54
    67203 
    67204 22 models selected 
    67205 
    67206 > select add #2.72
    67207 
    67208 23 models selected 
    67209 
    67210 > select add #2.480
    67211 
    67212 24 models selected 
    67213 
    67214 > select add #2.425
    67215 
    67216 25 models selected 
    67217 
    67218 > select add #2.427
    67219 
    67220 26 models selected 
    67221 
    67222 > select add #2.520
    67223 
    67224 27 models selected 
    67225 
    67226 > select add #2.522
    67227 
    67228 28 models selected 
    67229 
    67230 > select add #2.426
    67231 
    67232 29 models selected 
    67233 
    67234 > select add #2.69
    67235 
    67236 30 models selected 
    67237 
    67238 > select add #2.576
    67239 
    67240 31 models selected 
    67241 
    67242 > select add #2.452
    67243 
    67244 32 models selected 
    67245 
    67246 > select add #2.451
    67247 
    67248 33 models selected 
    67249 
    67250 > select add #2.573
    67251 
    67252 34 models selected 
    67253 
    67254 > select add #2.87
    67255 
    67256 35 models selected 
    67257 
    67258 > select add #2.99
    67259 
    67260 36 models selected 
    67261 
    67262 > select add #2.575
    67263 
    67264 37 models selected 
    67265 
    67266 > select add #2.97
    67267 
    67268 38 models selected 
    67269 
    67270 > select add #2.436
    67271 
    67272 39 models selected 
    67273 
    67274 > select add #2.434
    67275 
    67276 40 models selected 
    67277 
    67278 > select add #2.433
    67279 
    67280 41 models selected 
    67281 
    67282 > select add #2.457
    67283 
    67284 42 models selected 
    67285 
    67286 > select add #2.458
    67287 
    67288 43 models selected 
    67289 
    67290 > select add #2.435
    67291 
    67292 44 models selected 
    67293 
    67294 > select add #2.500
    67295 
    67296 45 models selected 
    67297 
    67298 > select add #2.498
    67299 
    67300 46 models selected 
    67301 
    67302 > select add #2.531
    67303 
    67304 47 models selected 
    67305 
    67306 > select add #2.532
    67307 
    67308 48 models selected 
    67309 
    67310 > select add #2.540
    67311 
    67312 49 models selected 
    67313 
    67314 > select add #2.499
    67315 
    67316 50 models selected 
    67317 
    67318 > select add #2.239
    67319 
    67320 51 models selected 
    67321 
    67322 > select add #2.242
    67323 
    67324 52 models selected 
    67325 
    67326 > select add #2.556
    67327 
    67328 53 models selected 
    67329 
    67330 > select add #2.557
    67331 
    67332 54 models selected 
    67333 
    67334 > select add #2.558
    67335 
    67336 55 models selected 
    67337 
    67338 > select add #2.245
    67339 
    67340 56 models selected 
    67341 
    67342 > select add #2.247
    67343 
    67344 57 models selected 
    67345 
    67346 > select add #2.544
    67347 
    67348 58 models selected 
    67349 
    67350 > select add #2.543
    67351 
    67352 59 models selected 
    67353 
    67354 > select add #2.225
    67355 
    67356 60 models selected 
    67357 
    67358 > select add #2.454
    67359 
    67360 61 models selected 
    67361 
    67362 > select add #2.456
    67363 
    67364 62 models selected 
    67365 
    67366 > select add #2.550
    67367 
    67368 63 models selected 
    67369 
    67370 > select add #2.536
    67371 
    67372 64 models selected 
    67373 
    67374 > select add #2.508
    67375 
    67376 65 models selected 
    67377 
    67378 > select add #2.83
    67379 
    67380 66 models selected 
    67381 
    67382 > select add #2.535
    67383 
    67384 67 models selected 
    67385 
    67386 > select add #2.475
    67387 
    67388 68 models selected 
    67389 
    67390 > select add #2.529
    67391 
    67392 69 models selected 
    67393 
    67394 > select add #2.509
    67395 
    67396 70 models selected 
    67397 
    67398 > select add #2.470
    67399 
    67400 71 models selected 
    67401 
    67402 > select add #2.548
    67403 
    67404 72 models selected 
    67405 
    67406 > select add #2.443
    67407 
    67408 73 models selected 
    67409 
    67410 > select add #2.467
    67411 
    67412 74 models selected 
    67413 
    67414 > select add #2.547
    67415 
    67416 75 models selected 
    67417 
    67418 > select add #2.441
    67419 
    67420 76 models selected 
    67421 
    67422 > select add #2.569
    67423 
    67424 77 models selected 
    67425 
    67426 > select add #2.570
    67427 
    67428 78 models selected 
    67429 
    67430 > select add #2.514
    67431 
    67432 79 models selected 
    67433 
    67434 > select add #2.515
    67435 
    67436 80 models selected 
    67437 
    67438 > select add #2.564
    67439 
    67440 81 models selected 
    67441 
    67442 > select add #2.563
    67443 
    67444 82 models selected 
    67445 
    67446 > select add #2.485
    67447 
    67448 83 models selected 
    67449 
    67450 > select add #2.463
    67451 
    67452 84 models selected 
    67453 
    67454 > select subtract #2.463
    67455 
    67456 83 models selected 
    67457 
    67458 > select add #2.463
    67459 
    67460 84 models selected 
    67461 
    67462 > select add #2.201
    67463 
    67464 85 models selected 
    67465 
    67466 > select add #2.76
    67467 
    67468 86 models selected 
    67469 
    67470 > select add #2.219
    67471 
    67472 87 models selected 
    67473 
    67474 > select add #2.196
    67475 
    67476 88 models selected 
    67477 
    67478 > select add #2.203
    67479 
    67480 89 models selected 
    67481 
    67482 > select add #2.154
    67483 
    67484 90 models selected 
    67485 
    67486 > select add #2.153
    67487 
    67488 91 models selected 
    67489 
    67490 > select add #2.161
    67491 
    67492 92 models selected 
    67493 
    67494 > select add #2.165
    67495 
    67496 93 models selected 
    67497 
    67498 > select add #2.561
    67499 
    67500 94 models selected 
    67501 
    67502 > select add #2.164
    67503 
    67504 95 models selected 
    67505 
    67506 > select add #2.562
    67507 
    67508 96 models selected 
    67509 
    67510 > select add #2.445
    67511 
    67512 97 models selected 
    67513 
    67514 > select add #2.503
    67515 
    67516 98 models selected 
    67517 
    67518 > select add #2.502
    67519 
    67520 99 models selected 
    67521 
    67522 > select add #2.504
    67523 
    67524 100 models selected 
    67525 
    67526 > select add #2.492
    67527 
    67528 101 models selected 
    67529 
    67530 > select add #2.491
    67531 
    67532 102 models selected 
    67533 
    67534 > select add #2.430
    67535 
    67536 103 models selected 
    67537 
    67538 > select add #2.494
    67539 
    67540 104 models selected 
    67541 
    67542 > select add #2.493
    67543 
    67544 105 models selected 
    67545 Grouped 105 regions 
    67546 
    67547 > select add #2.206
    67548 
    67549 2 models selected 
    67550 Grouped 2 regions 
    67551 Showing 446 region surfaces 
    67552 
    67553 > select add #2.29
    67554 
    67555 2 models selected 
    67556 
    67557 > select #2.29
    67558 
    67559 1 model selected 
    67560 
    67561 > select clear
    67562 
    67563 > select #2.29
    67564 
    67565 1 model selected 
    67566 Ungrouped to 42 regions 
    67567 Ungrouped to 32 regions 
    67568 Ungrouped to 8 regions 
    67569 
    67570 > select #2.91
    67571 
    67572 1 model selected 
    67573 Ungrouped to 29 regions 
    67574 
    67575 > select clear
    67576 
    67577 > select #2.242
    67578 
    67579 1 model selected 
    67580 Ungrouped to 5 regions 
    67581 
    67582 > select #2.520
    67583 
    67584 1 model selected 
    67585 
    67586 > select add #2.512
    67587 
    67588 2 models selected 
    67589 
    67590 > select add #2.514
    67591 
    67592 3 models selected 
    67593 
    67594 > select add #2.91
    67595 
    67596 4 models selected 
    67597 
    67598 > select add #2.515
    67599 
    67600 5 models selected 
    67601 
    67602 > select clear
    67603 
    67604 Drag select of 5353, 142720 of 176292 triangles, 432, 181, 426, 442, 439, 175,
    67605 160, 493, 185, 438, 190, 191, 188, 166, 174, 490, 434, 492, 437, 186, 146,
    67606 424, 169, 441, 155, 407, 421, 5819 of 6528 triangles, 440, 192, 498, 478, 419,
    67607 427, 425, 483, 4567 of 4816 triangles, 182, 481, 416, 418, 463, 406, 165, 467,
    67608 388, 839, 433, 431, 414, 413, 472, 2753 of 3224 triangles, 417, 4606 of 4792
    67609 triangles, 164, 458, 462, 408, 409, 405, 5023, 284, 5035, 516, 411, 6018 of
    67610 6216 triangles, 210, 95, 5047, 5162, 5013, 4664, 5157, 12982 of 13792
    67611 triangles, 4174, 5044, 5076, 5126, 4945, 5276, 10913 of 11100 triangles, 5150,
    67612 5165, 5148, 5031, 9816 of 10084 triangles, 17, 5129, 5160, 5086, 4681, 5757 of
    67613 5896 triangles, 5022, 8840 of 8924 triangles, 4742, 5151, 5281, 5164, 4134,
    67614 5029 
    67615 Grouped 92 regions 
    67616 
    67617 > select clear
    67618 
    67619 > select #2.29
    67620 
    67621 1 model selected 
    67622 Showing 451 region surfaces 
    67623 
    67624 > select clear
    67625 
    67626 > select #2.29
    67627 
    67628 1 model selected 
    67629 Showing 451 region surfaces 
    67630 Opened
    67631 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
    67632 #19, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    67633 
    67634 The cached device pixel ratio value was stale on window expose. Please file a
    67635 QTBUG which explains how to reproduce. 
    67636 
    67637 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/C-ring-stators.mrc
    67638 > models #19
    67639 
    67640 Opened
    67641 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
    67642 #20, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    67643 Segmenting
    67644 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    67645 density threshold 0.010668 
    67646 Showing 355 region surfaces 
    67647 3376 watershed regions, grouped to 355 regions 
    67648 Showing
    67649 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    67650 - 355 regions, 355 surfaces 
    67651 
    67652 > hide #!19 models
    67653 
    67654 > hide #!20 models
    67655 
    67656 > select #2.156
    67657 
    67658 1 model selected 
    67659 
    67660 > select add #2.196
    67661 
    67662 2 models selected 
    67663 
    67664 > select add #2.203
    67665 
    67666 3 models selected 
    67667 
    67668 > select add #2.142
    67669 
    67670 4 models selected 
    67671 
    67672 > select add #2.153
    67673 
    67674 5 models selected 
    67675 
    67676 > select add #2.158
    67677 
    67678 6 models selected 
    67679 Drag select of 4775, 7 of 20572 triangles, 4628, 7 of 7720 triangles, 4726, 12
    67680 of 5384 triangles, 4305, 16 of 5224 triangles 
    67681 Drag select of 4695, 30 of 71560 triangles, 4762, 10 of 20120 triangles, 4713,
    67682 4 of 19980 triangles, 4560, 7 of 7840 triangles 
    67683 
    67684 > select #2.158
    67685 
    67686 1 model selected 
    67687 
    67688 > select add #2.141
    67689 
    67690 2 models selected 
    67691 
    67692 > select add #2.143
    67693 
    67694 3 models selected 
    67695 
    67696 > select add #2.148
    67697 
    67698 4 models selected 
    67699 
    67700 > select add #2.164
    67701 
    67702 5 models selected 
    67703 
    67704 > select add #2.175
    67705 
    67706 6 models selected 
    67707 
    67708 > select add #2.157
    67709 
    67710 7 models selected 
    67711 
    67712 > select add #2.169
    67713 
    67714 8 models selected 
    67715 
    67716 > select add #2.167
    67717 
    67718 9 models selected 
    67719 
    67720 > select add #2.153
    67721 
    67722 10 models selected 
    67723 
    67724 > select add #2.174
    67725 
    67726 11 models selected 
    67727 
    67728 > select add #2.142
    67729 
    67730 12 models selected 
    67731 
    67732 > select add #2.166
    67733 
    67734 13 models selected 
    67735 
    67736 > select add #2.203
    67737 
    67738 14 models selected 
    67739 
    67740 > select add #2.196
    67741 
    67742 15 models selected 
    67743 
    67744 > select add #2.168
    67745 
    67746 16 models selected 
    67747 
    67748 > select add #2.156
    67749 
    67750 17 models selected 
    67751 
    67752 > select add #2.152
    67753 
    67754 18 models selected 
    67755 
    67756 > select add #2.146
    67757 
    67758 19 models selected 
    67759 
    67760 > select add #2.173
    67761 
    67762 20 models selected 
    67763 Drag select of 4733, 17 of 21208 triangles, 4603, 18 of 7732 triangles, 4104,
    67764 19 of 5384 triangles 
    67765 
    67766 > select add #2.171
    67767 
    67768 24 models selected 
    67769 
    67770 > select add #2.135
    67771 
    67772 25 models selected 
    67773 
    67774 > select subtract #2.30
    67775 
    67776 24 models selected 
    67777 
    67778 > select add #2.162
    67779 
    67780 25 models selected 
    67781 
    67782 > select add #2.160
    67783 
    67784 26 models selected 
    67785 
    67786 > select add #2.159
    67787 
    67788 27 models selected 
    67789 
    67790 > select add #2.150
    67791 
    67792 28 models selected 
    67793 
    67794 > select add #2.149
    67795 
    67796 29 models selected 
    67797 
    67798 > select add #2.176
    67799 
    67800 30 models selected 
    67801 
    67802 > select add #2.165
    67803 
    67804 31 models selected 
    67805 
    67806 > select add #2.151
    67807 
    67808 32 models selected 
    67809 
    67810 > select add #2.147
    67811 
    67812 33 models selected 
    67813 
    67814 > select add #2.161
    67815 
    67816 34 models selected 
    67817 
    67818 > select add #2.163
    67819 
    67820 35 models selected 
    67821 
    67822 > select add #2.155
    67823 
    67824 36 models selected 
    67825 Grouped 36 regions 
    67826 
    67827 > select clear
    67828 
    67829 > select #2.118
    67830 
    67831 1 model selected 
    67832 
    67833 > select #2.118
    67834 
    67835 1 model selected 
    67836 Ungrouped to 36 regions 
    67837 
    67838 > select subtract #2.196
    67839 
    67840 35 models selected 
    67841 Grouped 35 regions 
    67842 Showing 321 region surfaces 
    67843 Opened
    67844 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    67845 as #21, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    67846 
    67847 The cached device pixel ratio value was stale on window expose. Please file a
    67848 QTBUG which explains how to reproduce. 
    67849 
    67850 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/C-Vring.mrc models #21
    67851 
    67852 Opened
    67853 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    67854 as #22, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    67855 Segmenting
    67856 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    67857 density threshold 0.010668 
    67858 Showing 320 region surfaces 
    67859 3316 watershed regions, grouped to 320 regions 
    67860 Showing
    67861 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    67862 - 320 regions, 320 surfaces 
    67863 
    67864 > hide #!21 models
    67865 
    67866 > hide #!22 models
    67867 
    67868 > select #2.18
    67869 
    67870 1 model selected 
    67871 
    67872 > select add #2.9
    67873 
    67874 2 models selected 
    67875 
    67876 > select #2.58
    67877 
    67878 1 model selected 
    67879 
    67880 > select add #2.63
    67881 
    67882 2 models selected 
    67883 
    67884 > select add #2.62
    67885 
    67886 3 models selected 
    67887 
    67888 > select add #2.61
    67889 
    67890 4 models selected 
    67891 
    67892 > select clear
    67893 
    67894 Drag select of 2, 1 
    67895 Drag select of 4496, 32 of 4668 triangles, 4666, 3350 of 3396 triangles, 4667,
    67896 4619, 4472, 153 of 1580 triangles, 4515, 1050 of 1208 triangles, 4676, 496 of
    67897 704 triangles, 4278, 467 of 684 triangles, 2219, 3675, 176 of 440 triangles,
    67898 2231 
    67899 
    67900 > select subtract #2.174
    67901 
    67902 12 models selected 
    67903 
    67904 > select add #2.174
    67905 
    67906 13 models selected 
    67907 
    67908 > select add #2.178
    67909 
    67910 14 models selected 
    67911 
    67912 > select add #2.179
    67913 
    67914 15 models selected 
    67915 Drag select of 4698, 3411 of 3552 triangles, 4385, 4697, 2164 of 3016
    67916 triangles, 4726, 1744 of 2292 triangles, 2211, 2213 
    67917 Drag select of 4668, 2949 of 3596 triangles, 4666, 88 of 3396 triangles 
    67918 
    67919 > select add #2.189
    67920 
    67921 22 models selected 
    67922 
    67923 > select add #2.234
    67924 
    67925 23 models selected 
    67926 
    67927 > select add #2.199
    67928 
    67929 24 models selected 
    67930 
    67931 > select add #2.207
    67932 
    67933 25 models selected 
    67934 
    67935 > select add #2.224
    67936 
    67937 26 models selected 
    67938 
    67939 > select add #2.253
    67940 
    67941 27 models selected 
    67942 Drag select of 4598, 296 of 94920 triangles, 4597, 315 of 71560 triangles,
    67943 4737, 104 of 992 triangles, 4611, 665 of 1052 triangles, 4623, 355 of 1092
    67944 triangles, 4639, 2983, 81 of 384 triangles, 4671, 565 of 616 triangles, 4599,
    67945 210 of 452 triangles, 4390, 3224, 258 of 260 triangles, 3120, 4411, 4589, 152
    67946 of 208 triangles, 3165, 3180, 3005, 2976 
    67947 
    67948 > select subtract #2.2
    67949 
    67950 44 models selected 
    67951 
    67952 > select subtract #2.14
    67953 
    67954 43 models selected 
    67955 Drag select of 4604, 286 of 94960 triangles, 4597, 38 of 71560 triangles,
    67956 4714, 88 of 884 triangles, 4743, 132 of 792 triangles, 4624, 259 of 1132
    67957 triangles, 4603, 104 of 1260 triangles, 4647, 380 of 892 triangles, 4631, 590
    67958 of 980 triangles, 4655, 226 of 692 triangles, 4715, 397 of 728 triangles,
    67959 3987, 315 of 368 triangles, 2939, 4648, 172 of 500 triangles, 4359, 227 of 340
    67960 triangles, 2941, 4735, 248 of 356 triangles, 4608, 148 of 460 triangles, 2943,
    67961 2940, 4620, 4622, 2956, 3185, 3246, 4 of 120 triangles, 3142, 2903, 3080, 3171 
    67962 
    67963 > select subtract #2.1
    67964 
    67965 70 models selected 
    67966 
    67967 > select add #2.2
    67968 
    67969 71 models selected 
    67970 
    67971 > select subtract #2.2
    67972 
    67973 70 models selected 
    67974 
    67975 > select subtract #2.14
    67976 
    67977 69 models selected 
    67978 Drag select of 4598, 68 of 94920 triangles, 4607, 211 of 1492 triangles, 4615,
    67979 947 of 1276 triangles, 4420, 4746, 13 of 528 triangles, 4614, 4617, 4636,
    67980 4642, 180 of 340 triangles, 3085, 71 of 196 triangles, 3235, 3076, 99 of 156
    67981 triangles, 3140, 3182, 2999, 38 of 56 triangles 
    67982 
    67983 > select subtract #2.2
    67984 
    67985 83 models selected 
    67986 Drag select of 4597, 215 of 71560 triangles, 4646, 3249, 114 of 476 triangles,
    67987 4381, 193 of 736 triangles, 4605, 4335, 155 of 328 triangles, 4338, 3083,
    67988 4742, 80 of 128 triangles, 2971, 41 of 80 triangles, 2957, 73 of 80 triangles,
    67989 4644, 28 of 84 triangles 
    67990 
    67991 > select subtract #2.14
    67992 
    67993 94 models selected 
    67994 Drag select of 4596, 189 of 220 triangles, 4740, 48 of 248 triangles, 2977 
    67995 Grouped 97 regions 
    67996 Opened
    67997 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    67998 as #23, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    67999 Segmenting
    68000 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    68001 density threshold 0.010668 
    68002 Showing 223 region surfaces 
    68003 3017 watershed regions, grouped to 223 regions 
    68004 Showing
    68005 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    68006 - 223 regions, 223 surfaces 
    68007 
    68008 > select #2.68
    68009 
    68010 1 model selected 
    68011 
    68012 > select add #2.66
    68013 
    68014 2 models selected 
    68015 
    68016 > select add #2.69
    68017 
    68018 3 models selected 
    68019 
    68020 > select add #2.67
    68021 
    68022 4 models selected 
    68023 
    68024 > select add #2.54
    68025 
    68026 5 models selected 
    68027 
    68028 > select add #2.59
    68029 
    68030 6 models selected 
    68031 
    68032 > select add #2.53
    68033 
    68034 7 models selected 
    68035 
    68036 > select add #2.65
    68037 
    68038 8 models selected 
    68039 
    68040 > select add #2.64
    68041 
    68042 9 models selected 
    68043 
    68044 > select add #2.61
    68045 
    68046 10 models selected 
    68047 
    68048 > select add #2.62
    68049 
    68050 11 models selected 
    68051 
    68052 > select add #2.63
    68053 
    68054 12 models selected 
    68055 
    68056 > select add #2.58
    68057 
    68058 13 models selected 
    68059 
    68060 > select add #2.56
    68061 
    68062 14 models selected 
    68063 
    68064 > select add #2.60
    68065 
    68066 15 models selected 
    68067 
    68068 > select add #2.57
    68069 
    68070 16 models selected 
    68071 
    68072 > select add #2.55
    68073 
    68074 17 models selected 
    68075 Ungrouped to 47 regions 
    68076 Ungrouped to 70 regions 
    68077 Ungrouped to 64 regions 
    68078 Ungrouped to 17 regions 
    68079 Ungrouped to 0 regions 
    68080 
    68081 > select #2.86
    68082 
    68083 1 model selected 
    68084 
    68085 > select add #2.83
    68086 
    68087 2 models selected 
    68088 
    68089 > select #2.301
    68090 
    68091 1 model selected 
    68092 
    68093 > select add #2.300
    68094 
    68095 2 models selected 
    68096 
    68097 > select add #2.299
    68098 
    68099 3 models selected 
    68100 
    68101 > hide #!23 models
    68102 
    68103 Grouped 3 regions 
    68104 Ungrouped to 3 regions 
    68105 Ungrouped to 0 regions 
    68106 
    68107 > select #2.240
    68108 
    68109 1 model selected 
    68110 
    68111 > select #2.247
    68112 
    68113 1 model selected 
    68114 
    68115 > select add #2.240
    68116 
    68117 2 models selected 
    68118 
    68119 > select add #2.236
    68120 
    68121 3 models selected 
    68122 
    68123 > select add #2.83
    68124 
    68125 4 models selected 
    68126 
    68127 > select #2.83
    68128 
    68129 1 model selected 
    68130 Ungrouped to 3 regions 
    68131 
    68132 > select #2.84
    68133 
    68134 1 model selected 
    68135 
    68136 > select add #2.78
    68137 
    68138 2 models selected 
    68139 
    68140 > select add #2.74
    68141 
    68142 3 models selected 
    68143 Ungrouped to 11 regions 
    68144 Ungrouped to 4 regions 
    68145 Ungrouped to 0 regions 
    68146 
    68147 > select #2.79
    68148 
    68149 1 model selected 
    68150 
    68151 > select add #2.76
    68152 
    68153 2 models selected 
    68154 
    68155 > select add #2.77
    68156 
    68157 3 models selected 
    68158 
    68159 > select add #2.85
    68160 
    68161 4 models selected 
    68162 
    68163 > select add #2.80
    68164 
    68165 5 models selected 
    68166 
    68167 > select add #2.81
    68168 
    68169 6 models selected 
    68170 
    68171 > select add #2.87
    68172 
    68173 7 models selected 
    68174 
    68175 > select add #2.82
    68176 
    68177 8 models selected 
    68178 
    68179 > select add #2.71
    68180 
    68181 9 models selected 
    68182 
    68183 > select add #2.75
    68184 
    68185 10 models selected 
    68186 
    68187 > select add #2.70
    68188 
    68189 11 models selected 
    68190 
    68191 > select add #2.73
    68192 
    68193 12 models selected 
    68194 
    68195 > select add #2.86
    68196 
    68197 13 models selected 
    68198 
    68199 > select add #2.265
    68200 
    68201 14 models selected 
    68202 
    68203 > select subtract #2.265
    68204 
    68205 13 models selected 
    68206 Ungrouped to 43 regions 
    68207 Ungrouped to 13 regions 
    68208 Ungrouped to 0 regions 
    68209 
    68210 > select #2.374
    68211 
    68212 1 model selected 
    68213 
    68214 > select add #2.238
    68215 
    68216 2 models selected 
    68217 
    68218 > select add #2.288
    68219 
    68220 3 models selected 
    68221 
    68222 > select add #2.292
    68223 
    68224 4 models selected 
    68225 
    68226 > select add #2.306
    68227 
    68228 5 models selected 
    68229 Grouped 5 regions 
    68230 
    68231 > select #2.371
    68232 
    68233 1 model selected 
    68234 
    68235 > select add #2.370
    68236 
    68237 2 models selected 
    68238 
    68239 > select add #2.346
    68240 
    68241 3 models selected 
    68242 
    68243 > select add #2.347
    68244 
    68245 4 models selected 
    68246 
    68247 > select add #2.315
    68248 
    68249 5 models selected 
    68250 Grouped 5 regions 
    68251 
    68252 > select #2.379
    68253 
    68254 1 model selected 
    68255 
    68256 > select add #2.376
    68257 
    68258 2 models selected 
    68259 
    68260 > select add #2.356
    68261 
    68262 3 models selected 
    68263 
    68264 > select add #2.283
    68265 
    68266 4 models selected 
    68267 
    68268 > select add #2.389
    68269 
    68270 5 models selected 
    68271 
    68272 > select add #2.266
    68273 
    68274 6 models selected 
    68275 
    68276 > select add #2.269
    68277 
    68278 7 models selected 
    68279 
    68280 > select add #2.312
    68281 
    68282 8 models selected 
    68283 Grouped 8 regions 
    68284 
    68285 > select add #2.288
    68286 
    68287 2 models selected 
    68288 Grouped 2 regions 
    68289 
    68290 > select #2.77
    68291 
    68292 1 model selected 
    68293 
    68294 > select add #2.79
    68295 
    68296 2 models selected 
    68297 
    68298 > select add #2.75
    68299 
    68300 3 models selected 
    68301 
    68302 > select add #2.339
    68303 
    68304 4 models selected 
    68305 
    68306 > select add #2.277
    68307 
    68308 5 models selected 
    68309 
    68310 > select add #2.80
    68311 
    68312 6 models selected 
    68313 
    68314 > select add #2.81
    68315 
    68316 7 models selected 
    68317 
    68318 > select add #2.333
    68319 
    68320 8 models selected 
    68321 
    68322 > select add #2.272
    68323 
    68324 9 models selected 
    68325 
    68326 > select add #2.273
    68327 
    68328 10 models selected 
    68329 
    68330 > select add #2.318
    68331 
    68332 11 models selected 
    68333 
    68334 > select add #2.301
    68335 
    68336 12 models selected 
    68337 
    68338 > select add #2.341
    68339 
    68340 13 models selected 
    68341 
    68342 > select add #2.278
    68343 
    68344 14 models selected 
    68345 
    68346 > select add #2.275
    68347 
    68348 15 models selected 
    68349 
    68350 > select add #2.287
    68351 
    68352 16 models selected 
    68353 
    68354 > select add #2.335
    68355 
    68356 17 models selected 
    68357 
    68358 > select add #2.231
    68359 
    68360 18 models selected 
    68361 
    68362 > select add #2.230
    68363 
    68364 19 models selected 
    68365 
    68366 > select add #2.59
    68367 
    68368 20 models selected 
    68369 
    68370 > select add #2.70
    68371 
    68372 21 models selected 
    68373 
    68374 > select add #2.71
    68375 
    68376 22 models selected 
    68377 
    68378 > select add #2.349
    68379 
    68380 23 models selected 
    68381 
    68382 > select add #2.351
    68383 
    68384 24 models selected 
    68385 
    68386 > select add #2.348
    68387 
    68388 25 models selected 
    68389 
    68390 > select add #2.293
    68391 
    68392 26 models selected 
    68393 
    68394 > select add #2.82
    68395 
    68396 27 models selected 
    68397 
    68398 > select subtract #2.82
    68399 
    68400 26 models selected 
    68401 
    68402 > select add #2.82
    68403 
    68404 27 models selected 
    68405 
    68406 > select add #2.85
    68407 
    68408 28 models selected 
    68409 
    68410 > select add #2.337
    68411 
    68412 29 models selected 
    68413 
    68414 > select add #2.338
    68415 
    68416 30 models selected 
    68417 
    68418 > select add #2.68
    68419 
    68420 31 models selected 
    68421 
    68422 > select add #2.368
    68423 
    68424 32 models selected 
    68425 
    68426 > select add #2.366
    68427 
    68428 33 models selected 
    68429 
    68430 > select add #2.282
    68431 
    68432 34 models selected 
    68433 
    68434 > select add #2.281
    68435 
    68436 35 models selected 
    68437 
    68438 > select add #2.279
    68439 
    68440 36 models selected 
    68441 
    68442 > select add #2.363
    68443 
    68444 37 models selected 
    68445 
    68446 > select add #2.362
    68447 
    68448 38 models selected 
    68449 
    68450 > select add #2.261
    68451 
    68452 39 models selected 
    68453 
    68454 > select add #2.263
    68455 
    68456 40 models selected 
    68457 
    68458 > select add #2.271
    68459 
    68460 41 models selected 
    68461 Drag select of 4256, 16 of 42652 triangles, 4243, 16 of 19312 triangles, 4269,
    68462 27 of 19980 triangles, 4072, 12 of 7776 triangles, 1667, 17 of 4228 triangles 
    68463 
    68464 > select add #2.86
    68465 
    68466 47 models selected 
    68467 
    68468 > select add #2.286
    68469 
    68470 48 models selected 
    68471 
    68472 > select subtract #2.101
    68473 
    68474 47 models selected 
    68475 
    68476 > select subtract #2.49
    68477 
    68478 46 models selected 
    68479 
    68480 > select add #2.284
    68481 
    68482 47 models selected 
    68483 
    68484 > select add #2.290
    68485 
    68486 48 models selected 
    68487 
    68488 > select add #2.316
    68489 
    68490 49 models selected 
    68491 Drag select of 4256, 12 of 42652 triangles, 4233, 34 of 20120 triangles, 3442,
    68492 4 of 5396 triangles, 1578, 18 of 4388 triangles, 1747, 22 of 2792 triangles,
    68493 1815, 7 of 4608 triangles, 1992, 7 of 2268 triangles, 1602, 16 of 4224
    68494 triangles 
    68495 
    68496 > select add #2.326
    68497 
    68498 54 models selected 
    68499 
    68500 > select subtract #2.46
    68501 
    68502 53 models selected 
    68503 
    68504 > select subtract #2.36
    68505 
    68506 52 models selected 
    68507 
    68508 > select subtract #2.61
    68509 
    68510 51 models selected 
    68511 
    68512 > select subtract #2.344
    68513 
    68514 50 models selected 
    68515 
    68516 > select subtract #2.303
    68517 
    68518 49 models selected 
    68519 
    68520 > select add #2.316
    68521 
    68522 50 models selected 
    68523 
    68524 > select add #2.327
    68525 
    68526 51 models selected 
    68527 
    68528 > select add #2.62
    68529 
    68530 52 models selected 
    68531 
    68532 > select add #2.78
    68533 
    68534 53 models selected 
    68535 
    68536 > select add #2.74
    68537 
    68538 54 models selected 
    68539 
    68540 > select add #2.83
    68541 
    68542 55 models selected 
    68543 
    68544 > select add #2.328
    68545 
    68546 56 models selected 
    68547 
    68548 > select add #2.330
    68549 
    68550 57 models selected 
    68551 
    68552 > select add #2.54
    68553 
    68554 58 models selected 
    68555 
    68556 > select add #2.317
    68557 
    68558 59 models selected 
    68559 
    68560 > select add #2.84
    68561 
    68562 60 models selected 
    68563 
    68564 > select add #2.245
    68565 
    68566 61 models selected 
    68567 
    68568 > select add #2.67
    68569 
    68570 62 models selected 
    68571 
    68572 > select add #2.63
    68573 
    68574 63 models selected 
    68575 
    68576 > select add #2.320
    68577 
    68578 64 models selected 
    68579 
    68580 > select add #2.265
    68581 
    68582 65 models selected 
    68583 
    68584 > select add #2.236
    68585 
    68586 66 models selected 
    68587 
    68588 > select add #2.240
    68589 
    68590 67 models selected 
    68591 
    68592 > select add #2.247
    68593 
    68594 68 models selected 
    68595 Grouped 68 regions 
    68596 
    68597 > select #2.238
    68598 
    68599 1 model selected 
    68600 
    68601 > select add #2.266
    68602 
    68603 2 models selected 
    68604 
    68605 > select add #2.54
    68606 
    68607 3 models selected 
    68608 
    68609 > select #2.54
    68610 
    68611 1 model selected 
    68612 Ungrouped to 68 regions 
    68613 
    68614 > select subtract #2.71
    68615 
    68616 67 models selected 
    68617 Grouped 67 regions 
    68618 
    68619 > select add #2.238
    68620 
    68621 2 models selected 
    68622 
    68623 > select add #2.266
    68624 
    68625 3 models selected 
    68626 
    68627 > select subtract #2.238
    68628 
    68629 2 models selected 
    68630 Grouped 2 regions 
    68631 
    68632 > select clear
    68633 
    68634 Showing 306 region surfaces 
    68635 
    68636 > select #2.238
    68637 
    68638 1 model selected 
    68639 
    68640 > select #2.58
    68641 
    68642 1 model selected 
    68643 Ungrouped to 0 regions 
    68644 
    68645 > select #2.20
    68646 
    68647 1 model selected 
    68648 Ungrouped to 5 regions 
    68649 Ungrouped to 22 regions 
    68650 Ungrouped to 20 regions 
    68651 Ungrouped to 0 regions 
    68652 
    68653 > select #2.13
    68654 
    68655 1 model selected 
    68656 
    68657 > select #2.275
    68658 
    68659 1 model selected 
    68660 
    68661 > select add #2.238
    68662 
    68663 2 models selected 
    68664 Grouped 2 regions 
    68665 
    68666 > select clear
    68667 
    68668 > select #2.20
    68669 
    68670 1 model selected 
    68671 
    68672 > select add #2.54
    68673 
    68674 2 models selected 
    68675 Opened
    68676 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    68677 as #24, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    68678 
    68679 The cached device pixel ratio value was stale on window expose. Please file a
    68680 QTBUG which explains how to reproduce. 
    68681 
    68682 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/Cage-C17.mrc models #24
    68683 
    68684 > select clear
    68685 
    68686 > select #2.20
    68687 
    68688 1 model selected 
    68689 Opened
    68690 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    68691 as #25, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    68692 
    68693 The cached device pixel ratio value was stale on window expose. Please file a
    68694 QTBUG which explains how to reproduce. 
    68695 
    68696 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/Cage-Mono-Good.mrc
    68697 > models #25
    68698 
    68699 > select clear
    68700 
    68701 > select #2.54
    68702 
    68703 1 model selected 
    68704 
    68705 > select add #2.20
    68706 
    68707 2 models selected 
    68708 
    68709 > hide #!2 models
    68710 
    68711 > hide #!24 models
    68712 
    68713 > show #!24 models
    68714 
    68715 > hide #!24 models
    68716 
    68717 > hide #!25 models
    68718 
    68719 > show #!2 models
    68720 
    68721 > select clear
    68722 
    68723 > select #2.54
    68724 
    68725 1 model selected 
    68726 
    68727 > select add #2.20
    68728 
    68729 2 models selected 
    68730 Opened
    68731 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    68732 as #26, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    68733 Segmenting
    68734 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    68735 density threshold 0.010668 
    68736 Showing 240 region surfaces 
    68737 2931 watershed regions, grouped to 240 regions 
    68738 Showing
    68739 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    68740 - 240 regions, 240 surfaces 
    68741 
    68742 > select #2.155
    68743 
    68744 1 model selected 
    68745 
    68746 > select add #2.165
    68747 
    68748 2 models selected 
    68749 
    68750 > select add #2.154
    68751 
    68752 3 models selected 
    68753 
    68754 > select add #2.150
    68755 
    68756 4 models selected 
    68757 
    68758 > show #!25 models
    68759 
    68760 > select add #2.157
    68761 
    68762 5 models selected 
    68763 
    68764 > select add #2.162
    68765 
    68766 6 models selected 
    68767 
    68768 > select add #2.153
    68769 
    68770 7 models selected 
    68771 
    68772 > select add #2.149
    68773 
    68774 8 models selected 
    68775 
    68776 > select add #2.158
    68777 
    68778 9 models selected 
    68779 
    68780 > select add #2.164
    68781 
    68782 10 models selected 
    68783 
    68784 > select add #2.161
    68785 
    68786 11 models selected 
    68787 
    68788 > select add #2.152
    68789 
    68790 12 models selected 
    68791 
    68792 > select add #2.160
    68793 
    68794 13 models selected 
    68795 
    68796 > select add #2.159
    68797 
    68798 14 models selected 
    68799 
    68800 > select add #2.166
    68801 
    68802 15 models selected 
    68803 
    68804 > select add #2.163
    68805 
    68806 16 models selected 
    68807 
    68808 > select add #2.156
    68809 
    68810 17 models selected 
    68811 Ungrouped to 0 regions 
    68812 
    68813 > select #2.155
    68814 
    68815 1 model selected 
    68816 
    68817 > select add #2.150
    68818 
    68819 2 models selected 
    68820 
    68821 > select add #2.157
    68822 
    68823 3 models selected 
    68824 
    68825 > select add #2.162
    68826 
    68827 4 models selected 
    68828 
    68829 > select add #2.165
    68830 
    68831 5 models selected 
    68832 
    68833 > select add #2.154
    68834 
    68835 6 models selected 
    68836 
    68837 > select add #2.156
    68838 
    68839 7 models selected 
    68840 
    68841 > select add #2.163
    68842 
    68843 8 models selected 
    68844 
    68845 > select add #2.153
    68846 
    68847 9 models selected 
    68848 
    68849 > select add #2.149
    68850 
    68851 10 models selected 
    68852 
    68853 > select add #2.158
    68854 
    68855 11 models selected 
    68856 
    68857 > select add #2.164
    68858 
    68859 12 models selected 
    68860 
    68861 > select add #2.161
    68862 
    68863 13 models selected 
    68864 
    68865 > select add #2.152
    68866 
    68867 14 models selected 
    68868 
    68869 > select add #2.160
    68870 
    68871 15 models selected 
    68872 
    68873 > select add #2.159
    68874 
    68875 16 models selected 
    68876 
    68877 > select add #2.166
    68878 
    68879 17 models selected 
    68880 
    68881 > hide #!26 models
    68882 
    68883 Grouped 17 regions 
    68884 Opened
    68885 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    68886 as #27, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    68887 
    68888 The cached device pixel ratio value was stale on window expose. Please file a
    68889 QTBUG which explains how to reproduce. 
    68890 
    68891 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/MotB.mrc models #27
    68892 
    68893 Opened
    68894 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    68895 as #28, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    68896 Segmenting
    68897 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    68898 density threshold 0.010668 
    68899 Showing 220 region surfaces 
    68900 2914 watershed regions, grouped to 220 regions 
    68901 Showing
    68902 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    68903 - 220 regions, 220 surfaces 
    68904 
    68905 > hide #!27 models
    68906 
    68907 > hide #!28 models
    68908 
    68909 > select #2.83
    68910 
    68911 1 model selected 
    68912 Ungrouped to 2 regions 
    68913 [Repeated 2 time(s)]Ungrouped to 0 regions 
    68914 
    68915 > select #2.222
    68916 
    68917 1 model selected 
    68918 
    68919 > select add #2.224
    68920 
    68921 2 models selected 
    68922 
    68923 > select add #2.221
    68924 
    68925 3 models selected 
    68926 
    68927 > select #2.53
    68928 
    68929 1 model selected 
    68930 Ungrouped to 2 regions 
    68931 Ungrouped to 5 regions 
    68932 Ungrouped to 4 regions 
    68933 Ungrouped to 0 regions 
    68934 
    68935 > select #2.230
    68936 
    68937 1 model selected 
    68938 
    68939 > select add #2.227
    68940 
    68941 2 models selected 
    68942 
    68943 > select add #2.221
    68944 
    68945 3 models selected 
    68946 
    68947 > select add #2.224
    68948 
    68949 4 models selected 
    68950 
    68951 > select add #2.222
    68952 
    68953 5 models selected 
    68954 Grouped 5 regions 
    68955 
    68956 > select #2.223
    68957 
    68958 1 model selected 
    68959 Ungrouped to 0 regions 
    68960 
    68961 > select #2.53
    68962 
    68963 1 model selected 
    68964 
    68965 > hide #!25 models
    68966 
    68967 > select #2.229
    68968 
    68969 1 model selected 
    68970 
    68971 > select add #2.83
    68972 
    68973 2 models selected 
    68974 
    68975 > select add #2.78
    68976 
    68977 3 models selected 
    68978 
    68979 > select subtract #2.78
    68980 
    68981 2 models selected 
    68982 
    68983 > select #2.231
    68984 
    68985 1 model selected 
    68986 
    68987 > select add #2.53
    68988 
    68989 2 models selected 
    68990 Grouped 2 regions 
    68991 Ungrouped to 2 regions 
    68992 
    68993 > select #2.221
    68994 
    68995 1 model selected 
    68996 Ungrouped to 0 regions 
    68997 
    68998 > select #2.222
    68999 
    69000 1 model selected 
    69001 
    69002 > select add #2.221
    69003 
    69004 2 models selected 
    69005 Showing 225 region surfaces 
    69006 
    69007 > select #2.222
    69008 
    69009 1 model selected 
    69010 Ungrouped to 5 regions 
    69011 
    69012 > select #2.227
    69013 
    69014 1 model selected 
    69015 Ungrouped to 0 regions 
    69016 
    69017 > show #!24 models
    69018 
    69019 > show #!27 models
    69020 
    69021 > hide #!27 models
    69022 
    69023 > hide #!24 models
    69024 
    69025 Showing 229 region surfaces 
    69026 
    69027 > select #2.224
    69028 
    69029 1 model selected 
    69030 
    69031 > select add #2.226
    69032 
    69033 2 models selected 
    69034 
    69035 > select add #2.230
    69036 
    69037 3 models selected 
    69038 
    69039 > select add #2.53
    69040 
    69041 4 models selected 
    69042 
    69043 > select add #2.227
    69044 
    69045 5 models selected 
    69046 
    69047 > select subtract #2.226
    69048 
    69049 4 models selected 
    69050 Grouped 4 regions 
    69051 
    69052 > select add #2.226
    69053 
    69054 2 models selected 
    69055 
    69056 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/Segmentation.cxs
    69057 > includeMaps true
    69058 
    69059 > select #2.78
    69060 
    69061 1 model selected 
    69062 
    69063 > select add #2.229
    69064 
    69065 2 models selected 
    69066 
    69067 > select add #2.83
    69068 
    69069 3 models selected 
    69070 
    69071 > select add #2.225
    69072 
    69073 4 models selected 
    69074 
    69075 > select #2.78
    69076 
    69077 1 model selected 
    69078 Ungrouped to 2 regions 
    69079 
    69080 > select #2.224
    69081 
    69082 1 model selected 
    69083 
    69084 > select add #2.221
    69085 
    69086 2 models selected 
    69087 
    69088 > select add #2.229
    69089 
    69090 3 models selected 
    69091 
    69092 > select add #2.83
    69093 
    69094 4 models selected 
    69095 
    69096 > select #2.89
    69097 
    69098 1 model selected 
    69099 
    69100 > select #2.228
    69101 
    69102 1 model selected 
    69103 
    69104 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/Segmentation.cxs
    69105 > includeMaps true
    69106 
    69107 ——— End of log from Fri Jul 25 14:31:14 2025 ———
    69108 
    69109 opened ChimeraX session 
    69110 Showing
    69111 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    69112 - 227 regions, 227 surfaces 
    69113 
    69114 > select #2.206
    69115 
    69116 1 model selected 
    69117 
    69118 > select subtract #2.206
    69119 
    69120 Nothing selected 
    69121 
    69122 > select add #2.166
    69123 
    69124 1 model selected 
    69125 
    69126 > select add #2.206
    69127 
    69128 2 models selected 
    69129 
    69130 > select add #2.115
    69131 
    69132 3 models selected 
    69133 
    69134 > select add #2.203
    69135 
    69136 4 models selected 
    69137 
    69138 > select add #2.122
    69139 
    69140 5 models selected 
    69141 
    69142 > select add #2.100
    69143 
    69144 6 models selected 
    69145 
    69146 > select add #2.170
    69147 
    69148 7 models selected 
    69149 
    69150 > select add #2.200
    69151 
    69152 8 models selected 
    69153 
    69154 > select add #2.14
    69155 
    69156 9 models selected 
    69157 
    69158 > select add #2.60
    69159 
    69160 10 models selected 
    69161 
    69162 > select add #2.205
    69163 
    69164 11 models selected 
    69165 Grouped 11 regions 
    69166 
    69167 > select add #2.32
    69168 
    69169 2 models selected 
    69170 
    69171 > select add #2.64
    69172 
    69173 3 models selected 
    69174 
    69175 > select add #2.66
    69176 
    69177 4 models selected 
    69178 Grouped 4 regions 
    69179 
    69180 > select add #2.173
    69181 
    69182 2 models selected 
    69183 
    69184 > select clear
    69185 
    69186 > select #2.173
    69187 
    69188 1 model selected 
    69189 Ungrouped to 14 regions 
    69190 
    69191 > select #2.166
    69192 
    69193 1 model selected 
    69194 
    69195 > select add #2.191
    69196 
    69197 2 models selected 
    69198 Grouped 2 regions 
    69199 
    69200 > select add #2.170
    69201 
    69202 2 models selected 
    69203 
    69204 > select add #2.122
    69205 
    69206 3 models selected 
    69207 
    69208 > select add #2.153
    69209 
    69210 4 models selected 
    69211 
    69212 > select clear
    69213 
    69214 > select #2.153
    69215 
    69216 1 model selected 
    69217 Ungrouped to 18 regions 
    69218 
    69219 > select #2.143
    69220 
    69221 1 model selected 
    69222 
    69223 > select add #2.86
    69224 
    69225 2 models selected 
    69226 
    69227 > select add #2.16
    69228 
    69229 3 models selected 
    69230 
    69231 > select add #2.124
    69232 
    69233 4 models selected 
    69234 
    69235 > select #2.238
    69236 
    69237 1 model selected 
    69238 
    69239 > select add #2.194
    69240 
    69241 2 models selected 
    69242 Ungrouped to 13 regions 
    69243 Ungrouped to 37 regions 
    69244 
    69245 > select #2.278
    69246 
    69247 1 model selected 
    69248 
    69249 > select add #2.260
    69250 
    69251 2 models selected 
    69252 
    69253 > select add #2.290
    69254 
    69255 3 models selected 
    69256 
    69257 > select add #2.258
    69258 
    69259 4 models selected 
    69260 
    69261 > select add #2.272
    69262 
    69263 5 models selected 
    69264 
    69265 > select add #2.237
    69266 
    69267 6 models selected 
    69268 
    69269 > select add #2.274
    69270 
    69271 7 models selected 
    69272 
    69273 > select add #2.273
    69274 
    69275 8 models selected 
    69276 
    69277 > select add #2.267
    69278 
    69279 9 models selected 
    69280 Grouped 9 regions 
    69281 
    69282 > select #2.235
    69283 
    69284 1 model selected 
    69285 Ungrouped to 5 regions 
    69286 
    69287 > select #2.248
    69288 
    69289 1 model selected 
    69290 
    69291 > select add #2.291
    69292 
    69293 2 models selected 
    69294 
    69295 > select add #2.194
    69296 
    69297 3 models selected 
    69298 
    69299 > select add #2.173
    69300 
    69301 4 models selected 
    69302 
    69303 > select add #2.236
    69304 
    69305 5 models selected 
    69306 
    69307 > select subtract #2.173
    69308 
    69309 4 models selected 
    69310 Grouped 4 regions 
    69311 
    69312 > select add #2.14
    69313 
    69314 2 models selected 
    69315 Grouped 2 regions 
    69316 
    69317 > select clear
    69318 
    69319 > select #2.173
    69320 
    69321 1 model selected 
    69322 Ungrouped to 7 regions 
    69323 Ungrouped to 13 regions 
    69324 
    69325 > select #2.267
    69326 
    69327 1 model selected 
    69328 
    69329 > select add #2.256
    69330 
    69331 2 models selected 
    69332 
    69333 > select add #2.255
    69334 
    69335 3 models selected 
    69336 
    69337 > select add #2.173
    69338 
    69339 4 models selected 
    69340 
    69341 > select add #2.278
    69342 
    69343 5 models selected 
    69344 
    69345 > select add #2.260
    69346 
    69347 6 models selected 
    69348 
    69349 > select add #2.14
    69350 
    69351 7 models selected 
    69352 
    69353 > select add #2.274
    69354 
    69355 8 models selected 
    69356 
    69357 > select add #2.238
    69358 
    69359 9 models selected 
    69360 
    69361 > select add #2.239
    69362 
    69363 10 models selected 
    69364 Grouped 10 regions 
    69365 
    69366 > select add #2.153
    69367 
    69368 2 models selected 
    69369 Grouped 2 regions 
    69370 
    69371 > select add #2.257
    69372 
    69373 2 models selected 
    69374 Grouped 2 regions 
    69375 
    69376 > select #2.205
    69377 
    69378 1 model selected 
    69379 
    69380 > select add #2.166
    69381 
    69382 2 models selected 
    69383 
    69384 > select #2.166
    69385 
    69386 1 model selected 
    69387 Ungrouped to 2 regions 
    69388 Ungrouped to 22 regions 
    69389 Ungrouped to 47 regions 
    69390 
    69391 > select #2.300
    69392 
    69393 1 model selected 
    69394 
    69395 > select add #2.313
    69396 
    69397 2 models selected 
    69398 
    69399 > select add #2.331
    69400 
    69401 3 models selected 
    69402 
    69403 > select add #2.173
    69404 
    69405 4 models selected 
    69406 
    69407 > select add #2.153
    69408 
    69409 5 models selected 
    69410 
    69411 > select add #2.310
    69412 
    69413 6 models selected 
    69414 
    69415 > select subtract #2.310
    69416 
    69417 5 models selected 
    69418 
    69419 > select add #2.200
    69420 
    69421 6 models selected 
    69422 
    69423 > select add #2.310
    69424 
    69425 7 models selected 
    69426 
    69427 > select add #2.311
    69428 
    69429 8 models selected 
    69430 
    69431 > select add #2.337
    69432 
    69433 9 models selected 
    69434 
    69435 > select add #2.335
    69436 
    69437 10 models selected 
    69438 
    69439 > select add #2.334
    69440 
    69441 11 models selected 
    69442 
    69443 > select add #2.330
    69444 
    69445 12 models selected 
    69446 
    69447 > select add #2.332
    69448 
    69449 13 models selected 
    69450 
    69451 > select add #2.321
    69452 
    69453 14 models selected 
    69454 
    69455 > select add #2.115
    69456 
    69457 15 models selected 
    69458 
    69459 > select add #2.315
    69460 
    69461 16 models selected 
    69462 Grouped 16 regions 
    69463 
    69464 > select add #2.336
    69465 
    69466 2 models selected 
    69467 
    69468 > select add #2.338
    69469 
    69470 3 models selected 
    69471 
    69472 > select add #2.14
    69473 
    69474 4 models selected 
    69475 Grouped 4 regions 
    69476 
    69477 > select #2.170
    69478 
    69479 1 model selected 
    69480 
    69481 > select add #2.307
    69482 
    69483 2 models selected 
    69484 
    69485 > select add #2.268
    69486 
    69487 3 models selected 
    69488 Grouped 3 regions 
    69489 
    69490 > select add #2.14
    69491 
    69492 2 models selected 
    69493 Grouped 2 regions 
    69494 
    69495 > select add #2.122
    69496 
    69497 2 models selected 
    69498 
    69499 > select add #2.151
    69500 
    69501 3 models selected 
    69502 
    69503 > select add #2.314
    69504 
    69505 4 models selected 
    69506 
    69507 > select add #2.205
    69508 
    69509 5 models selected 
    69510 
    69511 > select add #2.312
    69512 
    69513 6 models selected 
    69514 
    69515 > select add #2.301
    69516 
    69517 7 models selected 
    69518 
    69519 > select add #2.303
    69520 
    69521 8 models selected 
    69522 
    69523 > select add #2.302
    69524 
    69525 9 models selected 
    69526 
    69527 > select add #2.333
    69528 
    69529 10 models selected 
    69530 
    69531 > select add #2.304
    69532 
    69533 11 models selected 
    69534 
    69535 > select add #2.270
    69536 
    69537 12 models selected 
    69538 
    69539 > select add #2.277
    69540 
    69541 13 models selected 
    69542 
    69543 > select add #2.259
    69544 
    69545 14 models selected 
    69546 
    69547 > select add #2.258
    69548 
    69549 15 models selected 
    69550 
    69551 > select add #2.276
    69552 
    69553 16 models selected 
    69554 Grouped 16 regions 
    69555 
    69556 > select clear
    69557 
    69558 > select #2.14
    69559 
    69560 1 model selected 
    69561 
    69562 The cached device pixel ratio value was stale on window expose. Please file a
    69563 QTBUG which explains how to reproduce. 
    69564 
    69565 > select clear
    69566 
    69567 > select #2.14
    69568 
    69569 1 model selected 
    69570 Ungrouped to 16 regions 
    69571 Ungrouped to 53 regions 
    69572 Ungrouped to 122 regions 
    69573 
    69574 > select #2.363
    69575 
    69576 1 model selected 
    69577 Ungrouped to 2 regions 
    69578 [Repeated 1 time(s)]Ungrouped to 19 regions 
    69579 
    69580 > select #2.331
    69581 
    69582 1 model selected 
    69583 Ungrouped to 2 regions 
    69584 Ungrouped to 8 regions 
    69585 Ungrouped to 29 regions 
    69586 Ungrouped to 51 regions 
    69587 Ungrouped to 82 regions 
    69588 Ungrouped to 94 regions 
    69589 Ungrouped to 49 regions 
    69590 Ungrouped to 0 regions 
    69591 
    69592 > select #2.330
    69593 
    69594 1 model selected 
    69595 Ungrouped to 25 regions 
    69596 Ungrouped to 57 regions 
    69597 Ungrouped to 33 regions 
    69598 Ungrouped to 0 regions 
    69599 
    69600 > select clear
    69601 
    69602 Drag select of 2134, 646 of 1164 triangles, 2157, 184 of 480 triangles, 2136,
    69603 18 of 208 triangles, 2206, 2270, 2192, 2306, 2255, 2287, 2217, 125 of 212
    69604 triangles, 2230, 285 of 288 triangles 
    69605 Drag select of 3887, 50 of 32680 triangles, 2253, 2168, 416 of 504 triangles,
    69606 2149, 118 of 664 triangles 
    69607 
    69608 > select subtract #2.451
    69609 
    69610 14 models selected 
    69611 
    69612 > select add #2.451
    69613 
    69614 15 models selected 
    69615 
    69616 > select subtract #2.451
    69617 
    69618 14 models selected 
    69619 Drag select of 2846, 2861, 96 of 100 triangles, 2906, 2895, 2907, 66 of 80
    69620 triangles, 3769, 77 of 1564 triangles, 2866, 25 of 80 triangles 
    69621 
    69622 > select subtract #2.411
    69623 
    69624 20 models selected 
    69625 Drag select of 2903, 2902, 2844, 119 of 264 triangles, 2893, 114 of 224
    69626 triangles, 2914, 2894, 2824, 2904, 2823, 2790, 2789, 2875, 32 of 196 triangles 
    69627 Grouped 32 regions 
    69628 Drag select of 2842, 4163, 240 of 38128 triangles, 2803, 3717, 38 of 1544
    69629 triangles, 2788, 2899, 2898, 2686, 100 of 236 triangles 
    69630 
    69631 > select subtract #2.416
    69632 
    69633 8 models selected 
    69634 
    69635 > select clear
    69636 
    69637 [Repeated 1 time(s)]Drag select of 3759, 13 of 3948 triangles, 1932, 1929,
    69638 1941, 1958, 1943, 1961, 1950, 1931, 1917, 1937, 1979, 1926, 1927, 1930, 1915,
    69639 1963, 1944, 1965, 1949, 1948, 1964, 1987, 1980, 1995, 1994, 1953, 1955, 1945,
    69640 1989, 1986, 1924, 1916, 1914, 1936, 1962, 1946, 1952, 1954, 1947, 1970, 1951,
    69641 1971, 1960, 1966, 1968, 1918, 1942, 1978, 1985, 1993, 1959, 1957, 2009, 319 of
    69642 1352 triangles, 1983, 1967, 1969, 1934, 1919, 2008, 503 of 2396 triangles,
    69643 2005, 1128 of 1468 triangles, 2011, 826 of 1532 triangles, 2042, 685 of 1608
    69644 triangles, 2041, 530 of 1332 triangles, 2001, 3009 of 4812 triangles, 1999,
    69645 3884 of 5484 triangles, 2019, 15 of 1068 triangles, 1984, 1991, 1992, 2018,
    69646 376 of 1536 triangles, 2015, 629 of 2064 triangles, 2034, 546 of 1292
    69647 triangles, 2045, 87 of 1696 triangles, 2054, 359 of 2100 triangles, 1976,
    69648 1975, 2016, 323 of 2124 triangles, 1973, 1972, 1977, 1974, 1982, 1990, 1998,
    69649 5283 of 6072 triangles, 1988, 1981, 1920, 1933, 2020, 251 of 4748 triangles,
    69650 2022, 209 of 1996 triangles, 2003, 3804 of 4272 triangles, 2014, 505 of 1296
    69651 triangles, 1996, 5206 of 6132 triangles, 2044, 111 of 1444 triangles, 2004,
    69652 2260 of 3664 triangles, 2000, 4488 of 6468 triangles, 2043, 456 of 1960
    69653 triangles, 2017, 765 of 4084 triangles, 2006, 679 of 1672 triangles, 2007, 509
    69654 of 1244 triangles, 2040, 707 of 1872 triangles, 2013, 708 of 1036 triangles,
    69655 1997, 4320 of 4764 triangles, 2021, 289 of 4780 triangles, 2012, 664 of 1836
    69656 triangles, 2033, 382 of 868 triangles, 2010, 836 of 2120 triangles, 2032, 559
    69657 of 1060 triangles 
    69658 Grouped 109 regions 
    69659 
    69660 > select #2.451
    69661 
    69662 1 model selected 
    69663 Ungrouped to 20 regions 
    69664 Ungrouped to 34 regions 
    69665 
    69666 > select #2.517
    69667 
    69668 1 model selected 
    69669 
    69670 > select add #2.520
    69671 
    69672 2 models selected 
    69673 
    69674 > select add #2.482
    69675 
    69676 3 models selected 
    69677 
    69678 > select add #2.507
    69679 
    69680 4 models selected 
    69681 
    69682 > select add #2.506
    69683 
    69684 5 models selected 
    69685 
    69686 > select add #2.362
    69687 
    69688 6 models selected 
    69689 
    69690 > select subtract #2.362
    69691 
    69692 5 models selected 
    69693 
    69694 > select add #2.519
    69695 
    69696 6 models selected 
    69697 
    69698 > select add #2.598
    69699 
    69700 7 models selected 
    69701 
    69702 > select add #2.702
    69703 
    69704 8 models selected 
    69705 
    69706 > select add #2.577
    69707 
    69708 9 models selected 
    69709 
    69710 > select add #2.663
    69711 
    69712 10 models selected 
    69713 
    69714 > select add #2.362
    69715 
    69716 11 models selected 
    69717 
    69718 > select subtract #2.362
    69719 
    69720 10 models selected 
    69721 
    69722 > select clear
    69723 
    69724 > select #2.362
    69725 
    69726 1 model selected 
    69727 Ungrouped to 16 regions 
    69728 Ungrouped to 21 regions 
    69729 
    69730 > select clear
    69731 
    69732 [Repeated 1 time(s)]
    69733 
    69734 > select #2.551
    69735 
    69736 1 model selected 
    69737 
    69738 > select clear
    69739 
    69740 > select #2.338
    69741 
    69742 1 model selected 
    69743 Drag select of 2207, 915 of 2828 triangles, 2267, 82 of 2000 triangles, 2205,
    69744 637 of 1484 triangles, 2127, 1696 of 2468 triangles, 2246, 215 of 1748
    69745 triangles, 2204, 1029 of 2616 triangles, 2244, 235 of 1900 triangles, 2101,
    69746 1796 of 2524 triangles, 2111, 1626 of 2368 triangles, 2077, 2114, 1819 of 2544
    69747 triangles, 2095, 2272, 25 of 1112 triangles, 2265, 210 of 2556 triangles,
    69748 2094, 2073, 3412, 2268 of 2968 triangles, 2161, 1383 of 2096 triangles, 2103,
    69749 2098, 2268 of 3096 triangles, 2100, 3218, 159 of 3636 triangles, 3725, 904 of
    69750 4604 triangles, 2139, 2138, 2203, 764 of 1816 triangles, 2221, 288 of 924
    69751 triangles, 3877, 262 of 21936 triangles, 3495, 2947 of 3972 triangles, 3537,
    69752 1208 of 4924 triangles, 2099, 2102, 2174, 1030 of 1876 triangles, 3057, 555 of
    69753 3912 triangles, 2084, 2239, 260 of 2052 triangles, 2163, 814 of 1040
    69754 triangles, 2105, 2162, 1157 of 1916 triangles, 2082, 2504 of 3552 triangles,
    69755 2197, 742 of 1664 triangles, 2116, 1835 of 2604 triangles, 2104, 2237, 381 of
    69756 1888 triangles, 2235, 314 of 1472 triangles, 2236, 325 of 1940 triangles,
    69757 2277, 65 of 2228 triangles, 2280, 159 of 2984 triangles, 2196, 867 of 1544
    69758 triangles, 2248, 222 of 1352 triangles, 2209, 649 of 1712 triangles, 2133,
    69759 1739 of 2396 triangles, 2155, 1959 of 2504 triangles, 2152, 2120 of 2980
    69760 triangles, 2171, 628 of 1540 triangles, 2247, 297 of 2168 triangles, 2273, 53
    69761 of 1676 triangles, 2274, 169 of 1632 triangles, 2068, 2067, 2065, 2093, 2023,
    69762 2049, 2039, 2066, 2063, 2026, 2036, 2154, 838 of 1456 triangles, 2112, 1559 of
    69763 2244 triangles, 2079, 2122, 1485 of 2332 triangles, 2088, 2097, 2048, 2035,
    69764 2037, 2052, 2050, 2051, 2028, 2030, 2046, 2092, 2029, 2091, 2047, 2038, 2072,
    69765 2125, 1513 of 1760 triangles, 2024, 2172, 870 of 1232 triangles, 2194, 964 of
    69766 1384 triangles, 2064, 2061, 2153, 1934 of 2784 triangles, 2170, 661 of 916
    69767 triangles, 2059, 2074, 2053, 2083, 2055, 2076, 1835 of 2684 triangles, 2078,
    69768 2031, 2027, 2090, 2201, 451 of 616 triangles, 2108, 2022 of 2236 triangles,
    69769 2056, 2025, 2062, 2489 of 2680 triangles, 2086, 2202, 655 of 1032 triangles,
    69770 2057, 2058, 2109, 2110, 2060, 2137, 2069, 2342 of 2348 triangles, 2262, 172 of
    69771 1840 triangles, 2185, 559 of 1536 triangles, 2187, 768 of 2344 triangles,
    69772 2219, 506 of 1216 triangles, 3385, 2893 of 4476 triangles, 2087, 2233, 226 of
    69773 1332 triangles, 2222, 406 of 1868 triangles, 2148, 1229 of 2536 triangles,
    69774 2085, 2075, 1876 of 2688 triangles, 2243, 20 of 2236 triangles, 2145, 1017 of
    69775 2040 triangles, 2160, 1201 of 2248 triangles, 2158, 1220 of 2148 triangles,
    69776 2113, 2200 of 3032 triangles, 2191, 704 of 1352 triangles, 2263, 43 of 1144
    69777 triangles, 2131, 1003 of 1464 triangles, 2200, 581 of 1276 triangles, 2269,
    69778 158 of 2376 triangles, 3205, 40 of 3552 triangles, 3834, 2375 of 3076
    69779 triangles 
    69780 Grouped 146 regions 
    69781 Drag select of 2275, 2292, 2266, 2406, 677 of 704 triangles, 2418, 997 of 2592
    69782 triangles, 2445, 223 of 1580 triangles, 2392, 878 of 2072 triangles, 2394, 763
    69783 of 1852 triangles, 2991, 28 of 2332 triangles, 2260, 2382, 1216 of 1572
    69784 triangles, 3141, 16 of 2840 triangles, 2492, 275 of 2348 triangles, 2409, 792
    69785 of 900 triangles, 2408, 730 of 816 triangles, 3208, 1453 of 2324 triangles,
    69786 2295, 2380, 1069 of 1760 triangles, 2381, 738 of 872 triangles, 2407, 785 of
    69787 828 triangles, 2495, 651 of 2424 triangles, 2427, 925 of 1788 triangles, 2429,
    69788 965 of 2440 triangles, 2434, 1058 of 1880 triangles, 2498, 448 of 2132
    69789 triangles, 2405, 1143 of 1820 triangles, 2428, 851 of 1496 triangles, 2430,
    69790 1318 of 3396 triangles, 2425, 1030 of 1688 triangles, 2379, 1437 of 2060
    69791 triangles, 2493, 391 of 2872 triangles, 2404, 1118 of 1928 triangles, 2494,
    69792 542 of 3696 triangles, 2467, 464 of 812 triangles, 2426, 979 of 4276
    69793 triangles, 2484, 125 of 2144 triangles, 2261, 2486, 9 of 2760 triangles, 2369,
    69794 936 of 1940 triangles, 2396, 856 of 1952 triangles, 3140, 2122 of 3520
    69795 triangles, 2290, 2344, 634 of 1080 triangles, 3240, 1956 of 2976 triangles,
    69796 2291, 2391, 410 of 708 triangles, 3241, 1917 of 3736 triangles, 2485, 69 of
    69797 2684 triangles, 2361, 755 of 1560 triangles, 2416, 287 of 648 triangles, 2527,
    69798 579 of 2632 triangles, 2431, 629 of 724 triangles, 2420, 544 of 876 triangles,
    69799 2371, 1109 of 1396 triangles, 2293, 1765 of 1808 triangles, 2375, 1032 of 1908
    69800 triangles, 2374, 810 of 884 triangles, 3678, 3924 of 12112 triangles, 2378,
    69801 1381 of 1464 triangles, 2294 
    69802 Grouped 61 regions 
    69803 
    69804 > select add #2.537
    69805 
    69806 2 models selected 
    69807 
    69808 > select add #2.536
    69809 
    69810 3 models selected 
    69811 
    69812 > select add #2.516
    69813 
    69814 4 models selected 
    69815 
    69816 > select add #2.451
    69817 
    69818 5 models selected 
    69819 
    69820 > select add #2.390
    69821 
    69822 6 models selected 
    69823 
    69824 > select add #2.393
    69825 
    69826 7 models selected 
    69827 
    69828 > select add #2.389
    69829 
    69830 8 models selected 
    69831 
    69832 > select add #2.388
    69833 
    69834 9 models selected 
    69835 
    69836 > select add #2.380
    69837 
    69838 10 models selected 
    69839 
    69840 > select add #2.378
    69841 
    69842 11 models selected 
    69843 
    69844 > select add #2.377
    69845 
    69846 12 models selected 
    69847 
    69848 > select add #2.383
    69849 
    69850 13 models selected 
    69851 
    69852 > select add #2.384
    69853 
    69854 14 models selected 
    69855 
    69856 > select add #2.464
    69857 
    69858 15 models selected 
    69859 
    69860 > select add #2.381
    69861 
    69862 16 models selected 
    69863 
    69864 > select add #2.303
    69865 
    69866 17 models selected 
    69867 
    69868 > select add #2.382
    69869 
    69870 18 models selected 
    69871 
    69872 > select add #2.379
    69873 
    69874 19 models selected 
    69875 
    69876 > select add #2.751
    69877 
    69878 20 models selected 
    69879 
    69880 > select add #2.762
    69881 
    69882 21 models selected 
    69883 
    69884 > select add #2.563
    69885 
    69886 22 models selected 
    69887 
    69888 > select add #2.356
    69889 
    69890 23 models selected 
    69891 
    69892 > select add #2.359
    69893 
    69894 24 models selected 
    69895 
    69896 > select add #2.363
    69897 
    69898 25 models selected 
    69899 
    69900 > select add #2.613
    69901 
    69902 26 models selected 
    69903 
    69904 > select add #2.542
    69905 
    69906 27 models selected 
    69907 
    69908 > select add #2.760
    69909 
    69910 28 models selected 
    69911 Grouped 28 regions 
    69912 
    69913 > select add #2.392
    69914 
    69915 2 models selected 
    69916 
    69917 > select add #2.466
    69918 
    69919 3 models selected 
    69920 
    69921 > select add #2.422
    69922 
    69923 4 models selected 
    69924 
    69925 > select add #2.771
    69926 
    69927 5 models selected 
    69928 
    69929 > select add #2.756
    69930 
    69931 6 models selected 
    69932 
    69933 > select add #2.759
    69934 
    69935 7 models selected 
    69936 
    69937 > select add #2.439
    69938 
    69939 8 models selected 
    69940 Grouped 8 regions 
    69941 
    69942 > select add #2.763
    69943 
    69944 2 models selected 
    69945 
    69946 > select add #2.450
    69947 
    69948 3 models selected 
    69949 
    69950 > select add #2.410
    69951 
    69952 4 models selected 
    69953 
    69954 > select add #2.415
    69955 
    69956 5 models selected 
    69957 
    69958 > select add #2.769
    69959 
    69960 6 models selected 
    69961 
    69962 > select add #2.711
    69963 
    69964 7 models selected 
    69965 
    69966 > select add #2.710
    69967 
    69968 8 models selected 
    69969 
    69970 > select add #2.770
    69971 
    69972 9 models selected 
    69973 
    69974 > select add #2.740
    69975 
    69976 10 models selected 
    69977 
    69978 > select add #2.350
    69979 
    69980 11 models selected 
    69981 
    69982 > select add #2.765
    69983 
    69984 12 models selected 
    69985 
    69986 > select add #2.764
    69987 
    69988 13 models selected 
    69989 
    69990 > select add #2.731
    69991 
    69992 14 models selected 
    69993 
    69994 > select add #2.727
    69995 
    69996 15 models selected 
    69997 
    69998 > select add #2.732
    69999 
    70000 16 models selected 
    70001 
    70002 > select add #2.534
    70003 
    70004 17 models selected 
    70005 
    70006 > select add #2.568
    70007 
    70008 18 models selected 
    70009 
    70010 > select add #2.761
    70011 
    70012 19 models selected 
    70013 
    70014 > select add #2.704
    70015 
    70016 20 models selected 
    70017 
    70018 > select add #2.412
    70019 
    70020 21 models selected 
    70021 Grouped 21 regions 
    70022 
    70023 > select add #2.700
    70024 
    70025 2 models selected 
    70026 
    70027 > select add #2.707
    70028 
    70029 3 models selected 
    70030 
    70031 > select add #2.730
    70032 
    70033 4 models selected 
    70034 
    70035 > select add #2.714
    70036 
    70037 5 models selected 
    70038 
    70039 > select add #2.713
    70040 
    70041 6 models selected 
    70042 
    70043 > select add #2.778
    70044 
    70045 7 models selected 
    70046 
    70047 > select add #2.703
    70048 
    70049 8 models selected 
    70050 
    70051 > select add #2.741
    70052 
    70053 9 models selected 
    70054 
    70055 > select add #2.742
    70056 
    70057 10 models selected 
    70058 
    70059 > select add #2.775
    70060 
    70061 11 models selected 
    70062 
    70063 > select add #2.773
    70064 
    70065 12 models selected 
    70066 
    70067 > select add #2.733
    70068 
    70069 13 models selected 
    70070 
    70071 > select add #2.774
    70072 
    70073 14 models selected 
    70074 
    70075 > select add #2.425
    70076 
    70077 15 models selected 
    70078 
    70079 > select add #2.766
    70080 
    70081 16 models selected 
    70082 
    70083 > select add #2.767
    70084 
    70085 17 models selected 
    70086 
    70087 > select add #2.768
    70088 
    70089 18 models selected 
    70090 
    70091 > select add #2.715
    70092 
    70093 19 models selected 
    70094 
    70095 > select add #2.706
    70096 
    70097 20 models selected 
    70098 
    70099 > select add #2.777
    70100 
    70101 21 models selected 
    70102 
    70103 > select add #2.712
    70104 
    70105 22 models selected 
    70106 Grouped 22 regions 
    70107 
    70108 > select add #2.418
    70109 
    70110 2 models selected 
    70111 
    70112 > select add #2.442
    70113 
    70114 3 models selected 
    70115 
    70116 > select add #2.735
    70117 
    70118 4 models selected 
    70119 
    70120 > select add #2.752
    70121 
    70122 5 models selected 
    70123 
    70124 > select add #2.737
    70125 
    70126 6 models selected 
    70127 
    70128 > select add #2.734
    70129 
    70130 7 models selected 
    70131 
    70132 > select add #2.736
    70133 
    70134 8 models selected 
    70135 
    70136 > select add #2.726
    70137 
    70138 9 models selected 
    70139 
    70140 > select add #2.436
    70141 
    70142 10 models selected 
    70143 
    70144 > select add #2.717
    70145 
    70146 11 models selected 
    70147 
    70148 > select add #2.411
    70149 
    70150 12 models selected 
    70151 
    70152 > select add #2.424
    70153 
    70154 13 models selected 
    70155 
    70156 > select add #2.456
    70157 
    70158 14 models selected 
    70159 Grouped 14 regions 
    70160 
    70161 > select add #2.728
    70162 
    70163 2 models selected 
    70164 
    70165 > select add #2.330
    70166 
    70167 3 models selected 
    70168 
    70169 > select add #2.471
    70170 
    70171 4 models selected 
    70172 
    70173 > select add #2.441
    70174 
    70175 5 models selected 
    70176 
    70177 > select add #2.429
    70178 
    70179 6 models selected 
    70180 
    70181 > select add #2.423
    70182 
    70183 7 models selected 
    70184 
    70185 > select add #2.401
    70186 
    70187 8 models selected 
    70188 
    70189 > select add #2.427
    70190 
    70191 9 models selected 
    70192 
    70193 > select add #2.151
    70194 
    70195 10 models selected 
    70196 
    70197 > select add #2.421
    70198 
    70199 11 models selected 
    70200 Grouped 11 regions 
    70201 
    70202 > select add #2.470
    70203 
    70204 2 models selected 
    70205 
    70206 > select add #2.431
    70207 
    70208 3 models selected 
    70209 
    70210 > select add #2.370
    70211 
    70212 4 models selected 
    70213 
    70214 > select add #2.417
    70215 
    70216 5 models selected 
    70217 
    70218 > select add #2.433
    70219 
    70220 6 models selected 
    70221 
    70222 > select add #2.122
    70223 
    70224 7 models selected 
    70225 
    70226 > select add #2.449
    70227 
    70228 8 models selected 
    70229 
    70230 > select subtract #2.449
    70231 
    70232 7 models selected 
    70233 
    70234 > select add #2.426
    70235 
    70236 8 models selected 
    70237 
    70238 > select add #2.413
    70239 
    70240 9 models selected 
    70241 
    70242 > select add #2.420
    70243 
    70244 10 models selected 
    70245 
    70246 > select add #2.447
    70247 
    70248 11 models selected 
    70249 
    70250 > select add #2.371
    70251 
    70252 12 models selected 
    70253 
    70254 > select add #2.153
    70255 
    70256 13 models selected 
    70257 
    70258 > select add #2.406
    70259 
    70260 14 models selected 
    70261 
    70262 > select add #2.405
    70263 
    70264 15 models selected 
    70265 
    70266 > select add #2.404
    70267 
    70268 16 models selected 
    70269 
    70270 > select add #2.361
    70271 
    70272 17 models selected 
    70273 
    70274 > select add #2.360
    70275 
    70276 18 models selected 
    70277 
    70278 > select add #2.387
    70279 
    70280 19 models selected 
    70281 
    70282 > select add #2.386
    70283 
    70284 20 models selected 
    70285 Grouped 20 regions 
    70286 
    70287 > select add #2.449
    70288 
    70289 2 models selected 
    70290 
    70291 > select add #2.419
    70292 
    70293 3 models selected 
    70294 
    70295 > select add #2.444
    70296 
    70297 4 models selected 
    70298 
    70299 > select add #2.428
    70300 
    70301 5 models selected 
    70302 
    70303 > select add #2.448
    70304 
    70305 6 models selected 
    70306 
    70307 > select subtract #2.448
    70308 
    70309 5 models selected 
    70310 
    70311 > select add #2.448
    70312 
    70313 6 models selected 
    70314 
    70315 > select add #2.409
    70316 
    70317 7 models selected 
    70318 
    70319 > select add #2.440
    70320 
    70321 8 models selected 
    70322 
    70323 > select add #2.432
    70324 
    70325 9 models selected 
    70326 
    70327 > select add #2.445
    70328 
    70329 10 models selected 
    70330 
    70331 > select add #2.414
    70332 
    70333 11 models selected 
    70334 
    70335 > select add #2.446
    70336 
    70337 12 models selected 
    70338 
    70339 > select add #2.434
    70340 
    70341 13 models selected 
    70342 
    70343 > select add #2.435
    70344 
    70345 14 models selected 
    70346 
    70347 > select add #2.385
    70348 
    70349 15 models selected 
    70350 Grouped 15 regions 
    70351 
    70352 > select add #2.560
    70353 
    70354 2 models selected 
    70355 
    70356 > select add #2.554
    70357 
    70358 3 models selected 
    70359 
    70360 > select add #2.430
    70361 
    70362 4 models selected 
    70363 
    70364 > select add #2.437
    70365 
    70366 5 models selected 
    70367 
    70368 > select add #2.558
    70369 
    70370 6 models selected 
    70371 
    70372 > select add #2.416
    70373 
    70374 7 models selected 
    70375 
    70376 > select add #2.673
    70377 
    70378 8 models selected 
    70379 
    70380 > select add #2.776
    70381 
    70382 9 models selected 
    70383 Grouped 9 regions 
    70384 
    70385 > select clear
    70386 
    70387 Showing 351 region surfaces 
    70388 
    70389 > select #2.61
    70390 
    70391 1 model selected 
    70392 
    70393 > select add #2.78
    70394 
    70395 2 models selected 
    70396 
    70397 > select add #2.59
    70398 
    70399 3 models selected 
    70400 
    70401 > select add #2.42
    70402 
    70403 4 models selected 
    70404 
    70405 > select add #2.45
    70406 
    70407 5 models selected 
    70408 
    70409 > select add #2.197
    70410 
    70411 6 models selected 
    70412 
    70413 > select add #2.36
    70414 
    70415 7 models selected 
    70416 Ungrouped to 14 regions 
    70417 Ungrouped to 10 regions 
    70418 
    70419 > select #2.38
    70420 
    70421 1 model selected 
    70422 
    70423 > select add #2.37
    70424 
    70425 2 models selected 
    70426 
    70427 > select add #2.43
    70428 
    70429 3 models selected 
    70430 
    70431 > select add #2.41
    70432 
    70433 4 models selected 
    70434 Ungrouped to 8 regions 
    70435 
    70436 > select #2.53
    70437 
    70438 1 model selected 
    70439 
    70440 > select add #2.44
    70441 
    70442 2 models selected 
    70443 
    70444 > select add #2.49
    70445 
    70446 3 models selected 
    70447 Ungrouped to 7 regions 
    70448 Ungrouped to 2 regions 
    70449 Ungrouped to 0 regions 
    70450 
    70451 > select #2.14
    70452 
    70453 1 model selected 
    70454 
    70455 > select add #2.161
    70456 
    70457 2 models selected 
    70458 Grouped 2 regions 
    70459 
    70460 > select clear
    70461 
    70462 > select #2.270
    70463 
    70464 1 model selected 
    70465 
    70466 > select add #2.151
    70467 
    70468 2 models selected 
    70469 
    70470 > select add #2.200
    70471 
    70472 3 models selected 
    70473 
    70474 > select add #2.42
    70475 
    70476 4 models selected 
    70477 
    70478 > select add #2.78
    70479 
    70480 5 models selected 
    70481 
    70482 > select add #2.255
    70483 
    70484 6 models selected 
    70485 
    70486 > select add #2.238
    70487 
    70488 7 models selected 
    70489 
    70490 > select add #2.267
    70491 
    70492 8 models selected 
    70493 
    70494 > select add #2.166
    70495 
    70496 9 models selected 
    70497 
    70498 > select add #2.49
    70499 
    70500 10 models selected 
    70501 
    70502 > select add #2.278
    70503 
    70504 11 models selected 
    70505 
    70506 > select add #2.43
    70507 
    70508 12 models selected 
    70509 
    70510 > select add #2.38
    70511 
    70512 13 models selected 
    70513 
    70514 > select add #2.258
    70515 
    70516 14 models selected 
    70517 
    70518 > select add #2.256
    70519 
    70520 15 models selected 
    70521 
    70522 > select add #2.59
    70523 
    70524 16 models selected 
    70525 
    70526 > select add #2.235
    70527 
    70528 17 models selected 
    70529 Ungrouped to 0 regions 
    70530 
    70531 > select #2.14
    70532 
    70533 1 model selected 
    70534 Showing 371 region surfaces 
    70535 
    70536 > select clear
    70537 
    70538 > select #2.192
    70539 
    70540 1 model selected 
    70541 
    70542 > select clear
    70543 
    70544 > select #2.192
    70545 
    70546 1 model selected 
    70547 Ungrouped to 12 regions 
    70548 Ungrouped to 39 regions 
    70549 Ungrouped to 41 regions 
    70550 Ungrouped to 8 regions 
    70551 
    70552 > select #2.14
    70553 
    70554 1 model selected 
    70555 
    70556 > select add #2.154
    70557 
    70558 2 models selected 
    70559 
    70560 > ui tool show "Side View"
    70561 
    70562 > select #2.154
    70563 
    70564 1 model selected 
    70565 Ungrouped to 15 regions 
    70566 
    70567 > select clear
    70568 
    70569 > select #2.356
    70570 
    70571 1 model selected 
    70572 
    70573 > select add #2.397
    70574 
    70575 2 models selected 
    70576 
    70577 > select add #2.418
    70578 
    70579 3 models selected 
    70580 
    70581 > select add #2.414
    70582 
    70583 4 models selected 
    70584 
    70585 > select add #2.14
    70586 
    70587 5 models selected 
    70588 
    70589 > select add #2.351
    70590 
    70591 6 models selected 
    70592 Grouped 6 regions 
    70593 
    70594 > select clear
    70595 
    70596 > select #2.14
    70597 
    70598 1 model selected 
    70599 Showing 446 region surfaces 
    70600 
    70601 > select clear
    70602 
    70603 > select #2.14
    70604 
    70605 1 model selected 
    70606 Opened
    70607 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    70608 as #29, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    70609 
    70610 The cached device pixel ratio value was stale on window expose. Please file a
    70611 QTBUG which explains how to reproduce. 
    70612 
    70613 > save /Users/shoichitachiyama/Desktop/tmp/Rod.mrc models #29
    70614 
    70615 Opened
    70616 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    70617 as #30, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    70618 
    70619 The cached device pixel ratio value was stale on window expose. Please file a
    70620 QTBUG which explains how to reproduce. 
    70621 
    70622 Segmenting
    70623 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    70624 density threshold 0.010668 
    70625 Showing 224 region surfaces 
    70626 2302 watershed regions, grouped to 224 regions 
    70627 Showing
    70628 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    70629 - 224 regions, 224 surfaces 
    70630 
    70631 > hide #!29 models
    70632 
    70633 > hide #!30 models
    70634 
    70635 Drag select of 3226, 3212, 3256, 3027, 3227, 3233, 3261, 3250, 3090, 3224,
    70636 3201, 3202, 3272, 3066, 3239, 3232, 3032, 3217, 3216, 3207, 3203, 3039, 3263,
    70637 3236, 3243, 3244, 3253, 2719, 3285, 3237, 3282, 3140, 2156, 3254, 3260, 3123,
    70638 3241, 2929, 2844, 2646, 3163, 3258, 2136, 2193, 3221, 3252, 3257, 2957, 2279,
    70639 2195, 2200, 2190, 2146, 2208, 2248, 2215 
    70640 Opened
    70641 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    70642 as #31, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    70643 Segmenting
    70644 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    70645 density threshold 0.010668 
    70646 Showing 168 region surfaces 
    70647 1897 watershed regions, grouped to 168 regions 
    70648 Showing
    70649 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    70650 - 168 regions, 168 surfaces 
    70651 
    70652 > select #2.84
    70653 
    70654 1 model selected 
    70655 
    70656 > select add #2.91
    70657 
    70658 2 models selected 
    70659 
    70660 > select add #2.66
    70661 
    70662 3 models selected 
    70663 
    70664 > select add #2.83
    70665 
    70666 4 models selected 
    70667 
    70668 > select add #2.50
    70669 
    70670 5 models selected 
    70671 
    70672 > select add #2.73
    70673 
    70674 6 models selected 
    70675 
    70676 > select add #2.93
    70677 
    70678 7 models selected 
    70679 
    70680 > select add #2.52
    70681 
    70682 8 models selected 
    70683 
    70684 > select add #2.48
    70685 
    70686 9 models selected 
    70687 
    70688 > select add #2.75
    70689 
    70690 10 models selected 
    70691 
    70692 > select add #2.43
    70693 
    70694 11 models selected 
    70695 
    70696 > select #2.70
    70697 
    70698 1 model selected 
    70699 
    70700 > select add #2.87
    70701 
    70702 2 models selected 
    70703 
    70704 > select add #2.88
    70705 
    70706 3 models selected 
    70707 
    70708 > select add #2.72
    70709 
    70710 4 models selected 
    70711 
    70712 > select add #2.76
    70713 
    70714 5 models selected 
    70715 
    70716 > select add #2.94
    70717 
    70718 6 models selected 
    70719 
    70720 > select add #2.97
    70721 
    70722 7 models selected 
    70723 
    70724 > select add #2.77
    70725 
    70726 8 models selected 
    70727 
    70728 > select add #2.86
    70729 
    70730 9 models selected 
    70731 
    70732 > select add #2.90
    70733 
    70734 10 models selected 
    70735 
    70736 > select add #2.82
    70737 
    70738 11 models selected 
    70739 
    70740 > select add #2.81
    70741 
    70742 12 models selected 
    70743 
    70744 > select add #2.74
    70745 
    70746 13 models selected 
    70747 
    70748 > select add #2.71
    70749 
    70750 14 models selected 
    70751 
    70752 > select add #2.89
    70753 
    70754 15 models selected 
    70755 
    70756 > select add #2.80
    70757 
    70758 16 models selected 
    70759 
    70760 > select add #2.85
    70761 
    70762 17 models selected 
    70763 Grouped 17 regions 
    70764 
    70765 > hide #!31 models
    70766 
    70767 > select #2.45
    70768 
    70769 1 model selected 
    70770 
    70771 > select add #2.58
    70772 
    70773 2 models selected 
    70774 
    70775 > select add #2.57
    70776 
    70777 3 models selected 
    70778 
    70779 > select add #2.60
    70780 
    70781 4 models selected 
    70782 
    70783 > select add #2.121
    70784 
    70785 5 models selected 
    70786 
    70787 > select add #2.134
    70788 
    70789 6 models selected 
    70790 
    70791 > select add #2.53
    70792 
    70793 7 models selected 
    70794 
    70795 > select add #2.64
    70796 
    70797 8 models selected 
    70798 
    70799 > select add #2.110
    70800 
    70801 9 models selected 
    70802 
    70803 > select add #2.112
    70804 
    70805 10 models selected 
    70806 
    70807 > select add #2.67
    70808 
    70809 11 models selected 
    70810 
    70811 > select add #2.43
    70812 
    70813 12 models selected 
    70814 
    70815 > select add #2.122
    70816 
    70817 13 models selected 
    70818 
    70819 > select add #2.44
    70820 
    70821 14 models selected 
    70822 
    70823 > select add #2.56
    70824 
    70825 15 models selected 
    70826 
    70827 > select add #2.47
    70828 
    70829 16 models selected 
    70830 
    70831 > select add #2.49
    70832 
    70833 17 models selected 
    70834 Ungrouped to 40 regions 
    70835 
    70836 > select #2.74
    70837 
    70838 1 model selected 
    70839 
    70840 > select add #2.70
    70841 
    70842 2 models selected 
    70843 
    70844 > select add #2.188
    70845 
    70846 3 models selected 
    70847 
    70848 > select add #2.88
    70849 
    70850 4 models selected 
    70851 
    70852 > select add #2.90
    70853 
    70854 5 models selected 
    70855 
    70856 > select add #2.85
    70857 
    70858 6 models selected 
    70859 
    70860 > select add #2.170
    70861 
    70862 7 models selected 
    70863 
    70864 > select add #2.184
    70865 
    70866 8 models selected 
    70867 
    70868 > select add #2.80
    70869 
    70870 9 models selected 
    70871 
    70872 > select add #2.190
    70873 
    70874 10 models selected 
    70875 
    70876 > select add #2.177
    70877 
    70878 11 models selected 
    70879 
    70880 > select add #2.174
    70881 
    70882 12 models selected 
    70883 
    70884 > select add #2.183
    70885 
    70886 13 models selected 
    70887 
    70888 > select add #2.76
    70889 
    70890 14 models selected 
    70891 Grouped 14 regions 
    70892 
    70893 > select #2.97
    70894 
    70895 1 model selected 
    70896 
    70897 > select add #2.180
    70898 
    70899 2 models selected 
    70900 
    70901 > select add #2.192
    70902 
    70903 3 models selected 
    70904 
    70905 > select add #2.179
    70906 
    70907 4 models selected 
    70908 Ungrouped to 10 regions 
    70909 
    70910 > select clear
    70911 
    70912 > select #2.60
    70913 
    70914 1 model selected 
    70915 
    70916 > select add #2.57
    70917 
    70918 2 models selected 
    70919 
    70920 > select add #2.47
    70921 
    70922 3 models selected 
    70923 
    70924 > select add #2.45
    70925 
    70926 4 models selected 
    70927 
    70928 > select add #2.43
    70929 
    70930 5 models selected 
    70931 Grouped 5 regions 
    70932 
    70933 > select clear
    70934 
    70935 > select #2.43
    70936 
    70937 1 model selected 
    70938 
    70939 > select #2.84
    70940 
    70941 1 model selected 
    70942 
    70943 > select add #2.178
    70944 
    70945 2 models selected 
    70946 
    70947 > select add #2.99
    70948 
    70949 3 models selected 
    70950 
    70951 > select add #2.96
    70952 
    70953 4 models selected 
    70954 
    70955 > select add #2.98
    70956 
    70957 5 models selected 
    70958 
    70959 > select add #2.191
    70960 
    70961 6 models selected 
    70962 
    70963 > select add #2.78
    70964 
    70965 7 models selected 
    70966 
    70967 > select add #2.181
    70968 
    70969 8 models selected 
    70970 
    70971 > select add #2.75
    70972 
    70973 9 models selected 
    70974 
    70975 > select add #2.48
    70976 
    70977 10 models selected 
    70978 
    70979 > select add #2.52
    70980 
    70981 11 models selected 
    70982 
    70983 > select add #2.93
    70984 
    70985 12 models selected 
    70986 
    70987 > select add #2.73
    70988 
    70989 13 models selected 
    70990 
    70991 > select add #2.50
    70992 
    70993 14 models selected 
    70994 
    70995 > select add #2.83
    70996 
    70997 15 models selected 
    70998 
    70999 > select add #2.66
    71000 
    71001 16 models selected 
    71002 
    71003 > select add #2.91
    71004 
    71005 17 models selected 
    71006 Ungrouped to 35 regions 
    71007 
    71008 > select #2.76
    71009 
    71010 1 model selected 
    71011 
    71012 > select add #2.121
    71013 
    71014 2 models selected 
    71015 
    71016 > select add #2.174
    71017 
    71018 3 models selected 
    71019 
    71020 > select add #2.110
    71021 
    71022 4 models selected 
    71023 
    71024 > select add #2.88
    71025 
    71026 5 models selected 
    71027 
    71028 > select add #2.195
    71029 
    71030 6 models selected 
    71031 
    71032 > select add #2.45
    71033 
    71034 7 models selected 
    71035 
    71036 > select add #2.60
    71037 
    71038 8 models selected 
    71039 
    71040 > select add #2.97
    71041 
    71042 9 models selected 
    71043 
    71044 > select add #2.196
    71045 
    71046 10 models selected 
    71047 
    71048 > select add #2.193
    71049 
    71050 11 models selected 
    71051 
    71052 > select add #2.170
    71053 
    71054 12 models selected 
    71055 
    71056 > select add #2.74
    71057 
    71058 13 models selected 
    71059 
    71060 > select add #2.198
    71061 
    71062 14 models selected 
    71063 
    71064 > select add #2.183
    71065 
    71066 15 models selected 
    71067 
    71068 > select add #2.188
    71069 
    71070 16 models selected 
    71071 
    71072 > select add #2.180
    71073 
    71074 17 models selected 
    71075 Grouped 17 regions 
    71076 
    71077 > select clear
    71078 
    71079 > select #2.45
    71080 
    71081 1 model selected 
    71082 Opened
    71083 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    71084 as #32, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    71085 
    71086 The cached device pixel ratio value was stale on window expose. Please file a
    71087 QTBUG which explains how to reproduce. 
    71088 
    71089 > save /Users/shoichitachiyama/Desktop/tmp/FliL.mrc models #32
    71090 
    71091 Opened
    71092 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    71093 as #33, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    71094 
    71095 > hide #!32 models
    71096 
    71097 > hide #!33 models
    71098 
    71099 Segmenting
    71100 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    71101 density threshold 0.010668 
    71102 Showing 171 region surfaces 
    71103 1880 watershed regions, grouped to 171 regions 
    71104 Showing
    71105 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    71106 - 171 regions, 171 surfaces 
    71107 
    71108 > show #!32 models
    71109 
    71110 > show #!29 models
    71111 
    71112 > show #!27 models
    71113 
    71114 > show #!25 models
    71115 
    71116 > hide #!25 models
    71117 
    71118 > show #!24 models
    71119 
    71120 > hide #!24 models
    71121 
    71122 > show #!24 models
    71123 
    71124 > hide #!24 models
    71125 
    71126 > show #!25 models
    71127 
    71128 > hide #!25 models
    71129 
    71130 > hide #!27 models
    71131 
    71132 > hide #!29 models
    71133 
    71134 > hide #!32 models
    71135 
    71136 > select #2.152
    71137 
    71138 1 model selected 
    71139 
    71140 > select add #2.138
    71141 
    71142 2 models selected 
    71143 
    71144 > select add #2.154
    71145 
    71146 3 models selected 
    71147 
    71148 > select add #2.139
    71149 
    71150 4 models selected 
    71151 
    71152 > select add #2.149
    71153 
    71154 5 models selected 
    71155 
    71156 > select add #2.147
    71157 
    71158 6 models selected 
    71159 
    71160 > select add #2.50
    71161 
    71162 7 models selected 
    71163 
    71164 > select add #2.97
    71165 
    71166 8 models selected 
    71167 
    71168 > select add #2.105
    71169 
    71170 9 models selected 
    71171 
    71172 > select add #2.141
    71173 
    71174 10 models selected 
    71175 
    71176 > select add #2.146
    71177 
    71178 11 models selected 
    71179 
    71180 > select add #2.153
    71181 
    71182 12 models selected 
    71183 
    71184 > select add #2.142
    71185 
    71186 13 models selected 
    71187 Ungrouped to 26 regions 
    71188 Ungrouped to 15 regions 
    71189 Ungrouped to 2 regions 
    71190 Ungrouped to 0 regions 
    71191 
    71192 > select #2.194
    71193 
    71194 1 model selected 
    71195 
    71196 > select add #2.141
    71197 
    71198 2 models selected 
    71199 
    71200 > select add #2.180
    71201 
    71202 3 models selected 
    71203 
    71204 > select add #2.152
    71205 
    71206 4 models selected 
    71207 
    71208 > select add #2.97
    71209 
    71210 5 models selected 
    71211 
    71212 > select add #2.154
    71213 
    71214 6 models selected 
    71215 
    71216 > select add #2.198
    71217 
    71218 7 models selected 
    71219 
    71220 > select add #2.146
    71221 
    71222 8 models selected 
    71223 
    71224 > select add #2.138
    71225 
    71226 9 models selected 
    71227 
    71228 > select add #2.174
    71229 
    71230 10 models selected 
    71231 
    71232 > select add #2.182
    71233 
    71234 11 models selected 
    71235 
    71236 > select add #2.192
    71237 
    71238 12 models selected 
    71239 
    71240 > select add #2.197
    71241 
    71242 13 models selected 
    71243 
    71244 > select add #2.177
    71245 
    71246 14 models selected 
    71247 
    71248 > select add #2.191
    71249 
    71250 15 models selected 
    71251 
    71252 > select add #2.178
    71253 
    71254 16 models selected 
    71255 
    71256 > select add #2.185
    71257 
    71258 17 models selected 
    71259 
    71260 > select add #2.85
    71261 
    71262 18 models selected 
    71263 
    71264 > select add #2.71
    71265 
    71266 19 models selected 
    71267 
    71268 > select add #2.77
    71269 
    71270 20 models selected 
    71271 
    71272 > select add #2.81
    71273 
    71274 21 models selected 
    71275 
    71276 > select add #2.75
    71277 
    71278 22 models selected 
    71279 
    71280 > select add #2.74
    71281 
    71282 23 models selected 
    71283 
    71284 > select add #2.69
    71285 
    71286 24 models selected 
    71287 
    71288 > select add #2.67
    71289 
    71290 25 models selected 
    71291 
    71292 > select add #2.80
    71293 
    71294 26 models selected 
    71295 
    71296 > select add #2.73
    71297 
    71298 27 models selected 
    71299 
    71300 > select add #2.76
    71301 
    71302 28 models selected 
    71303 
    71304 > select add #2.66
    71305 
    71306 29 models selected 
    71307 
    71308 > select add #2.78
    71309 
    71310 30 models selected 
    71311 
    71312 > select add #2.79
    71313 
    71314 31 models selected 
    71315 
    71316 > select add #2.68
    71317 
    71318 32 models selected 
    71319 
    71320 > select add #2.70
    71321 
    71322 33 models selected 
    71323 
    71324 > select add #2.83
    71325 
    71326 34 models selected 
    71327 Grouped 34 regions 
    71328 
    71329 > select add #2.143
    71330 
    71331 2 models selected 
    71332 
    71333 > select add #2.158
    71334 
    71335 3 models selected 
    71336 
    71337 > select add #2.119
    71338 
    71339 4 models selected 
    71340 
    71341 > select add #2.148
    71342 
    71343 5 models selected 
    71344 
    71345 > select add #2.144
    71346 
    71347 6 models selected 
    71348 
    71349 > select add #2.101
    71350 
    71351 7 models selected 
    71352 
    71353 > select add #2.160
    71354 
    71355 8 models selected 
    71356 
    71357 > select add #2.161
    71358 
    71359 9 models selected 
    71360 
    71361 > select add #2.168
    71362 
    71363 10 models selected 
    71364 
    71365 > select add #2.140
    71366 
    71367 11 models selected 
    71368 
    71369 > select add #2.145
    71370 
    71371 12 models selected 
    71372 
    71373 > select add #2.157
    71374 
    71375 13 models selected 
    71376 
    71377 > select add #2.136
    71378 
    71379 14 models selected 
    71380 
    71381 > select add #2.135
    71382 
    71383 15 models selected 
    71384 
    71385 > select add #2.162
    71386 
    71387 16 models selected 
    71388 
    71389 > select add #2.150
    71390 
    71391 17 models selected 
    71392 
    71393 > select add #2.151
    71394 
    71395 18 models selected 
    71396 
    71397 > select add #2.176
    71398 
    71399 19 models selected 
    71400 
    71401 > select add #2.190
    71402 
    71403 20 models selected 
    71404 
    71405 > select add #2.179
    71406 
    71407 21 models selected 
    71408 
    71409 > select add #2.184
    71410 
    71411 22 models selected 
    71412 
    71413 > select add #2.195
    71414 
    71415 23 models selected 
    71416 
    71417 > select add #2.139
    71418 
    71419 24 models selected 
    71420 
    71421 > select add #2.172
    71422 
    71423 25 models selected 
    71424 
    71425 > select add #2.149
    71426 
    71427 26 models selected 
    71428 
    71429 > select add #2.50
    71430 
    71431 27 models selected 
    71432 
    71433 > select add #2.153
    71434 
    71435 28 models selected 
    71436 
    71437 > select add #2.199
    71438 
    71439 29 models selected 
    71440 
    71441 > select add #2.142
    71442 
    71443 30 models selected 
    71444 
    71445 > select add #2.173
    71446 
    71447 31 models selected 
    71448 
    71449 > select add #2.175
    71450 
    71451 32 models selected 
    71452 
    71453 > select add #2.183
    71454 
    71455 33 models selected 
    71456 
    71457 > select add #2.193
    71458 
    71459 34 models selected 
    71460 
    71461 > select add #2.196
    71462 
    71463 35 models selected 
    71464 
    71465 > select subtract #2.176
    71466 
    71467 34 models selected 
    71468 
    71469 > select subtract #2.190
    71470 
    71471 33 models selected 
    71472 
    71473 > select add #2.190
    71474 
    71475 34 models selected 
    71476 
    71477 > select subtract #2.190
    71478 
    71479 33 models selected 
    71480 
    71481 > select add #2.176
    71482 
    71483 34 models selected 
    71484 
    71485 > select add #2.190
    71486 
    71487 35 models selected 
    71488 
    71489 > select add #2.167
    71490 
    71491 36 models selected 
    71492 
    71493 > select add #2.156
    71494 
    71495 37 models selected 
    71496 
    71497 > select add #2.165
    71498 
    71499 38 models selected 
    71500 
    71501 > select add #2.163
    71502 
    71503 39 models selected 
    71504 
    71505 > select add #2.170
    71506 
    71507 40 models selected 
    71508 
    71509 > select add #2.155
    71510 
    71511 41 models selected 
    71512 
    71513 > select add #2.108
    71514 
    71515 42 models selected 
    71516 
    71517 > select add #2.1
    71518 
    71519 43 models selected 
    71520 
    71521 > select add #2.117
    71522 
    71523 44 models selected 
    71524 
    71525 > select add #2.164
    71526 
    71527 45 models selected 
    71528 
    71529 > select add #2.169
    71530 
    71531 46 models selected 
    71532 
    71533 > select add #2.159
    71534 
    71535 47 models selected 
    71536 
    71537 > select add #2.129
    71538 
    71539 48 models selected 
    71540 
    71541 > select add #2.166
    71542 
    71543 49 models selected 
    71544 
    71545 > select clear
    71546 
    71547 > select #2.1
    71548 
    71549 1 model selected 
    71550 Ungrouped to 12 regions 
    71551 Ungrouped to 39 regions 
    71552 Ungrouped to 41 regions 
    71553 
    71554 > select #2.232
    71555 
    71556 1 model selected 
    71557 
    71558 > select add #2.215
    71559 
    71560 2 models selected 
    71561 
    71562 > select add #2.233
    71563 
    71564 3 models selected 
    71565 
    71566 > select add #2.185
    71567 
    71568 4 models selected 
    71569 
    71570 > select add #2.70
    71571 
    71572 5 models selected 
    71573 
    71574 > select add #2.219
    71575 
    71576 6 models selected 
    71577 
    71578 > select add #2.78
    71579 
    71580 7 models selected 
    71581 
    71582 > select add #2.211
    71583 
    71584 8 models selected 
    71585 
    71586 > select #2.228
    71587 
    71588 1 model selected 
    71589 
    71590 > select add #2.231
    71591 
    71592 2 models selected 
    71593 
    71594 > select add #2.230
    71595 
    71596 3 models selected 
    71597 
    71598 > select add #2.229
    71599 
    71600 4 models selected 
    71601 
    71602 > select add #2.73
    71603 
    71604 5 models selected 
    71605 
    71606 > select add #2.75
    71607 
    71608 6 models selected 
    71609 
    71610 > select add #2.237
    71611 
    71612 7 models selected 
    71613 
    71614 > select add #2.235
    71615 
    71616 8 models selected 
    71617 
    71618 > select add #2.223
    71619 
    71620 9 models selected 
    71621 
    71622 > select add #2.224
    71623 
    71624 10 models selected 
    71625 
    71626 > select add #2.138
    71627 
    71628 11 models selected 
    71629 
    71630 > select add #2.226
    71631 
    71632 12 models selected 
    71633 
    71634 > select add #2.239
    71635 
    71636 13 models selected 
    71637 
    71638 > select add #2.240
    71639 
    71640 14 models selected 
    71641 
    71642 > select add #2.212
    71643 
    71644 15 models selected 
    71645 
    71646 > select add #2.79
    71647 
    71648 16 models selected 
    71649 
    71650 > select add #2.220
    71651 
    71652 17 models selected 
    71653 
    71654 > select add #2.71
    71655 
    71656 18 models selected 
    71657 
    71658 > select add #2.178
    71659 
    71660 19 models selected 
    71661 
    71662 > select add #2.182
    71663 
    71664 20 models selected 
    71665 
    71666 > select add #2.213
    71667 
    71668 21 models selected 
    71669 
    71670 > select add #2.214
    71671 
    71672 22 models selected 
    71673 
    71674 > select add #2.154
    71675 
    71676 23 models selected 
    71677 
    71678 > select add #2.174
    71679 
    71680 24 models selected 
    71681 
    71682 > select add #2.177
    71683 
    71684 25 models selected 
    71685 
    71686 > select add #2.77
    71687 
    71688 26 models selected 
    71689 
    71690 > select add #2.76
    71691 
    71692 27 models selected 
    71693 
    71694 > select add #2.238
    71695 
    71696 28 models selected 
    71697 
    71698 > select add #2.236
    71699 
    71700 29 models selected 
    71701 
    71702 > select add #2.225
    71703 
    71704 30 models selected 
    71705 
    71706 > select add #2.227
    71707 
    71708 31 models selected 
    71709 
    71710 > select add #2.69
    71711 
    71712 32 models selected 
    71713 
    71714 > select add #2.216
    71715 
    71716 33 models selected 
    71717 
    71718 > select add #2.234
    71719 
    71720 34 models selected 
    71721 
    71722 > select clear
    71723 
    71724 > select add #2.74
    71725 
    71726 1 model selected 
    71727 
    71728 > select add #2.147
    71729 
    71730 2 models selected 
    71731 
    71732 > select add #2.68
    71733 
    71734 3 models selected 
    71735 
    71736 > select add #2.204
    71737 
    71738 4 models selected 
    71739 
    71740 > select add #2.194
    71741 
    71742 5 models selected 
    71743 
    71744 > select add #2.218
    71745 
    71746 6 models selected 
    71747 
    71748 > select add #2.80
    71749 
    71750 7 models selected 
    71751 
    71752 > select add #2.202
    71753 
    71754 8 models selected 
    71755 
    71756 > select add #2.198
    71757 
    71758 9 models selected 
    71759 
    71760 > select add #2.187
    71761 
    71762 10 models selected 
    71763 
    71764 > select add #2.189
    71765 
    71766 11 models selected 
    71767 
    71768 > select add #2.188
    71769 
    71770 12 models selected 
    71771 
    71772 > select add #2.85
    71773 
    71774 13 models selected 
    71775 
    71776 > select add #2.97
    71777 
    71778 14 models selected 
    71779 
    71780 > select add #2.222
    71781 
    71782 15 models selected 
    71783 
    71784 > select add #2.209
    71785 
    71786 16 models selected 
    71787 
    71788 > select add #2.210
    71789 
    71790 17 models selected 
    71791 
    71792 > select #2.161
    71793 
    71794 1 model selected 
    71795 
    71796 > select add #2.168
    71797 
    71798 2 models selected 
    71799 
    71800 > select add #2.140
    71801 
    71802 3 models selected 
    71803 
    71804 > select add #2.117
    71805 
    71806 4 models selected 
    71807 
    71808 > select add #2.164
    71809 
    71810 5 models selected 
    71811 
    71812 > select add #2.221
    71813 
    71814 6 models selected 
    71815 
    71816 > select add #2.160
    71817 
    71818 7 models selected 
    71819 
    71820 > select add #2.101
    71821 
    71822 8 models selected 
    71823 
    71824 > select add #2.159
    71825 
    71826 9 models selected 
    71827 
    71828 > select add #2.129
    71829 
    71830 10 models selected 
    71831 
    71832 > select add #2.144
    71833 
    71834 11 models selected 
    71835 
    71836 > select add #2.166
    71837 
    71838 12 models selected 
    71839 
    71840 > select add #2.119
    71841 
    71842 13 models selected 
    71843 
    71844 > select add #2.148
    71845 
    71846 14 models selected 
    71847 
    71848 > select add #2.167
    71849 
    71850 15 models selected 
    71851 
    71852 > select add #2.156
    71853 
    71854 16 models selected 
    71855 
    71856 > select add #2.158
    71857 
    71858 17 models selected 
    71859 
    71860 > select add #2.143
    71861 
    71862 18 models selected 
    71863 
    71864 > select add #2.165
    71865 
    71866 19 models selected 
    71867 
    71868 > select add #2.151
    71869 
    71870 20 models selected 
    71871 
    71872 > select add #2.1
    71873 
    71874 21 models selected 
    71875 
    71876 > select add #2.163
    71877 
    71878 22 models selected 
    71879 
    71880 > select add #2.155
    71881 
    71882 23 models selected 
    71883 
    71884 > select add #2.217
    71885 
    71886 24 models selected 
    71887 
    71888 > select subtract #2.151
    71889 
    71890 23 models selected 
    71891 
    71892 > select add #2.150
    71893 
    71894 24 models selected 
    71895 
    71896 > select add #2.151
    71897 
    71898 25 models selected 
    71899 
    71900 > select add #2.162
    71901 
    71902 26 models selected 
    71903 
    71904 > select add #2.135
    71905 
    71906 27 models selected 
    71907 
    71908 > select add #2.108
    71909 
    71910 28 models selected 
    71911 
    71912 > select add #2.67
    71913 
    71914 29 models selected 
    71915 
    71916 > select add #2.136
    71917 
    71918 30 models selected 
    71919 
    71920 > select add #2.157
    71921 
    71922 31 models selected 
    71923 
    71924 > select add #2.145
    71925 
    71926 32 models selected 
    71927 
    71928 > select add #2.199
    71929 
    71930 33 models selected 
    71931 
    71932 > select add #2.153
    71933 
    71934 34 models selected 
    71935 
    71936 > select add #2.50
    71937 
    71938 35 models selected 
    71939 
    71940 > select add #2.149
    71941 
    71942 36 models selected 
    71943 
    71944 > select add #2.172
    71945 
    71946 37 models selected 
    71947 
    71948 > select add #2.139
    71949 
    71950 38 models selected 
    71951 
    71952 > select add #2.195
    71953 
    71954 39 models selected 
    71955 
    71956 > select add #2.184
    71957 
    71958 40 models selected 
    71959 
    71960 > select add #2.179
    71961 
    71962 41 models selected 
    71963 
    71964 > select add #2.190
    71965 
    71966 42 models selected 
    71967 
    71968 > select add #2.176
    71969 
    71970 43 models selected 
    71971 
    71972 > select add #2.196
    71973 
    71974 44 models selected 
    71975 
    71976 > select add #2.193
    71977 
    71978 45 models selected 
    71979 
    71980 > select add #2.183
    71981 
    71982 46 models selected 
    71983 
    71984 > select add #2.175
    71985 
    71986 47 models selected 
    71987 Grouped 47 regions 
    71988 
    71989 > select add #2.173
    71990 
    71991 2 models selected 
    71992 
    71993 > select add #2.142
    71994 
    71995 3 models selected 
    71996 Grouped 3 regions 
    71997 
    71998 > select clear
    71999 
    72000 > select #2.169
    72001 
    72002 1 model selected 
    72003 
    72004 > select add #2.170
    72005 
    72006 2 models selected 
    72007 
    72008 > select add #2.1
    72009 
    72010 3 models selected 
    72011 Grouped 3 regions 
    72012 Showing 172 region surfaces 
    72013 
    72014 > select clear
    72015 
    72016 > select #2.1
    72017 
    72018 1 model selected 
    72019 Opened
    72020 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    72021 as #34, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    72022 
    72023 The cached device pixel ratio value was stale on window expose. Please file a
    72024 QTBUG which explains how to reproduce. 
    72025 
    72026 > save /Users/shoichitachiyama/Desktop/tmp/MS-ring.mrc models #34
    72027 
    72028 Opened
    72029 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    72030 as #35, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    72031 Segmenting
    72032 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    72033 density threshold 0.010668 
    72034 Showing 141 region surfaces 
    72035 1780 watershed regions, grouped to 141 regions 
    72036 Showing
    72037 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    72038 - 141 regions, 141 surfaces 
    72039 
    72040 > hide #!34 models
    72041 
    72042 > hide #!35 models
    72043 
    72044 > show #!34 models
    72045 
    72046 The cached device pixel ratio value was stale on window expose. Please file a
    72047 QTBUG which explains how to reproduce. 
    72048 
    72049 > close #34-35
    72050 
    72051 The cached device pixel ratio value was stale on window expose. Please file a
    72052 QTBUG which explains how to reproduce. 
    72053 
    72054 Segmenting
    72055 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    72056 density threshold 0.010668 
    72057 Showing 171 region surfaces 
    72058 1880 watershed regions, grouped to 171 regions 
    72059 Showing
    72060 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    72061 - 171 regions, 171 surfaces 
    72062 
    72063 > select #2.139
    72064 
    72065 1 model selected 
    72066 
    72067 > select add #2.154
    72068 
    72069 2 models selected 
    72070 
    72071 > select add #2.138
    72072 
    72073 3 models selected 
    72074 
    72075 > select add #2.152
    72076 
    72077 4 models selected 
    72078 
    72079 > select add #2.142
    72080 
    72081 5 models selected 
    72082 
    72083 > select add #2.153
    72084 
    72085 6 models selected 
    72086 
    72087 > select add #2.146
    72088 
    72089 7 models selected 
    72090 
    72091 > select add #2.141
    72092 
    72093 8 models selected 
    72094 
    72095 > select add #2.105
    72096 
    72097 9 models selected 
    72098 
    72099 > select add #2.97
    72100 
    72101 10 models selected 
    72102 
    72103 > select add #2.50
    72104 
    72105 11 models selected 
    72106 
    72107 > select add #2.147
    72108 
    72109 12 models selected 
    72110 
    72111 > select add #2.149
    72112 
    72113 13 models selected 
    72114 Ungrouped to 26 regions 
    72115 Ungrouped to 15 regions 
    72116 Ungrouped to 2 regions 
    72117 Ungrouped to 0 regions 
    72118 Ungrouped to 160 regions 
    72119 
    72120 > select #2.180
    72121 
    72122 1 model selected 
    72123 
    72124 > select add #2.194
    72125 
    72126 2 models selected 
    72127 
    72128 > select add #2.176
    72129 
    72130 3 models selected 
    72131 
    72132 > select add #2.192
    72133 
    72134 4 models selected 
    72135 
    72136 > select add #2.174
    72137 
    72138 5 models selected 
    72139 
    72140 > select add #2.182
    72141 
    72142 6 models selected 
    72143 
    72144 > select add #2.190
    72145 
    72146 7 models selected 
    72147 
    72148 > select add #2.184
    72149 
    72150 8 models selected 
    72151 
    72152 > select add #2.188
    72153 
    72154 9 models selected 
    72155 
    72156 > select add #2.178
    72157 
    72158 10 models selected 
    72159 
    72160 > select add #2.50
    72161 
    72162 11 models selected 
    72163 
    72164 > select add #2.139
    72165 
    72166 12 models selected 
    72167 
    72168 > select add #2.105
    72169 
    72170 13 models selected 
    72171 
    72172 > select add #2.153
    72173 
    72174 14 models selected 
    72175 
    72176 > select add #2.142
    72177 
    72178 15 models selected 
    72179 
    72180 > select add #2.172
    72181 
    72182 16 models selected 
    72183 
    72184 > select add #2.198
    72185 
    72186 17 models selected 
    72187 Grouped 17 regions 
    72188 
    72189 > select add #2.149
    72190 
    72191 2 models selected 
    72192 Grouped 2 regions 
    72193 
    72194 > select add #2.181
    72195 
    72196 2 models selected 
    72197 
    72198 > select add #2.199
    72199 
    72200 3 models selected 
    72201 
    72202 > select add #2.173
    72203 
    72204 4 models selected 
    72205 
    72206 > select add #2.147
    72207 
    72208 5 models selected 
    72209 
    72210 > select add #2.154
    72211 
    72212 6 models selected 
    72213 
    72214 > select add #2.138
    72215 
    72216 7 models selected 
    72217 
    72218 > select add #2.141
    72219 
    72220 8 models selected 
    72221 
    72222 > select add #2.97
    72223 
    72224 9 models selected 
    72225 
    72226 > select add #2.152
    72227 
    72228 10 models selected 
    72229 
    72230 > select subtract #2.152
    72231 
    72232 9 models selected 
    72233 
    72234 > select add #2.185
    72235 
    72236 10 models selected 
    72237 
    72238 > select add #2.189
    72239 
    72240 11 models selected 
    72241 
    72242 > select add #2.191
    72243 
    72244 12 models selected 
    72245 
    72246 > select add #2.183
    72247 
    72248 13 models selected 
    72249 
    72250 > select add #2.175
    72251 
    72252 14 models selected 
    72253 
    72254 > select add #2.193
    72255 
    72256 15 models selected 
    72257 
    72258 > select add #2.177
    72259 
    72260 16 models selected 
    72261 
    72262 > select add #2.195
    72263 
    72264 17 models selected 
    72265 
    72266 > select add #2.85
    72267 
    72268 18 models selected 
    72269 
    72270 > select add #2.71
    72271 
    72272 19 models selected 
    72273 
    72274 > select add #2.297
    72275 
    72276 20 models selected 
    72277 
    72278 > select add #2.353
    72279 
    72280 21 models selected 
    72281 
    72282 > select add #2.75
    72283 
    72284 22 models selected 
    72285 
    72286 > select add #2.74
    72287 
    72288 23 models selected 
    72289 
    72290 > select add #2.69
    72291 
    72292 24 models selected 
    72293 
    72294 > select add #2.67
    72295 
    72296 25 models selected 
    72297 
    72298 > select add #2.80
    72299 
    72300 26 models selected 
    72301 
    72302 > select add #2.280
    72303 
    72304 27 models selected 
    72305 
    72306 > select add #2.76
    72307 
    72308 28 models selected 
    72309 
    72310 > select add #2.287
    72311 
    72312 29 models selected 
    72313 
    72314 > select add #2.341
    72315 
    72316 30 models selected 
    72317 
    72318 > select add #2.79
    72319 
    72320 31 models selected 
    72321 
    72322 > select add #2.68
    72323 
    72324 32 models selected 
    72325 
    72326 > select add #2.70
    72327 
    72328 33 models selected 
    72329 
    72330 > select add #2.299
    72331 
    72332 34 models selected 
    72333 
    72334 > select add #2.152
    72335 
    72336 35 models selected 
    72337 
    72338 > select add #2.136
    72339 
    72340 36 models selected 
    72341 
    72342 > select add #2.135
    72343 
    72344 37 models selected 
    72345 
    72346 > select add #2.162
    72347 
    72348 38 models selected 
    72349 
    72350 > select add #2.150
    72351 
    72352 39 models selected 
    72353 
    72354 > select add #2.151
    72355 
    72356 40 models selected 
    72357 
    72358 > select add #2.143
    72359 
    72360 41 models selected 
    72361 
    72362 > select add #2.158
    72363 
    72364 42 models selected 
    72365 
    72366 > select add #2.119
    72367 
    72368 43 models selected 
    72369 
    72370 > select add #2.148
    72371 
    72372 44 models selected 
    72373 
    72374 > select add #2.144
    72375 
    72376 45 models selected 
    72377 
    72378 > select add #2.207
    72379 
    72380 46 models selected 
    72381 
    72382 > select add #2.208
    72383 
    72384 47 models selected 
    72385 
    72386 > select add #2.160
    72387 
    72388 48 models selected 
    72389 
    72390 > select add #2.161
    72391 
    72392 49 models selected 
    72393 
    72394 > select add #2.168
    72395 
    72396 50 models selected 
    72397 
    72398 > select add #2.140
    72399 
    72400 51 models selected 
    72401 
    72402 > select add #2.157
    72403 
    72404 52 models selected 
    72405 
    72406 > select add #2.145
    72407 
    72408 53 models selected 
    72409 
    72410 > select add #2.167
    72411 
    72412 54 models selected 
    72413 
    72414 > select add #2.166
    72415 
    72416 55 models selected 
    72417 
    72418 > select add #2.230
    72419 
    72420 56 models selected 
    72421 
    72422 > select add #2.229
    72423 
    72424 57 models selected 
    72425 
    72426 > select add #2.159
    72427 
    72428 58 models selected 
    72429 
    72430 > select add #2.169
    72431 
    72432 59 models selected 
    72433 
    72434 > select add #2.164
    72435 
    72436 60 models selected 
    72437 
    72438 > select add #2.228
    72439 
    72440 61 models selected 
    72441 
    72442 > select add #2.227
    72443 
    72444 62 models selected 
    72445 
    72446 > select add #2.108
    72447 
    72448 63 models selected 
    72449 
    72450 > select add #2.155
    72451 
    72452 64 models selected 
    72453 
    72454 > select add #2.170
    72455 
    72456 65 models selected 
    72457 
    72458 > select add #2.163
    72459 
    72460 66 models selected 
    72461 
    72462 > select add #2.165
    72463 
    72464 67 models selected 
    72465 
    72466 > select add #2.156
    72467 
    72468 68 models selected 
    72469 
    72470 > select add #2.301
    72471 
    72472 69 models selected 
    72473 
    72474 > select add #2.311
    72475 
    72476 70 models selected 
    72477 
    72478 > select add #2.308
    72479 
    72480 71 models selected 
    72481 
    72482 > select add #2.303
    72483 
    72484 72 models selected 
    72485 
    72486 > select #2.308
    72487 
    72488 1 model selected 
    72489 Ungrouped to 4 regions 
    72490 Ungrouped to 5 regions 
    72491 
    72492 > select clear
    72493 
    72494 > select #2.3
    72495 
    72496 1 model selected 
    72497 
    72498 > select add #2.9
    72499 
    72500 2 models selected 
    72501 
    72502 > select add #2.10
    72503 
    72504 3 models selected 
    72505 
    72506 > select add #2.6
    72507 
    72508 4 models selected 
    72509 
    72510 > select add #2.8
    72511 
    72512 5 models selected 
    72513 
    72514 > select add #2.2
    72515 
    72516 6 models selected 
    72517 
    72518 > select #2.311
    72519 
    72520 1 model selected 
    72521 
    72522 > select add #2.301
    72523 
    72524 2 models selected 
    72525 Ungrouped to 5 regions 
    72526 Ungrouped to 4 regions 
    72527 Ungrouped to 0 regions 
    72528 
    72529 > select #2.4
    72530 
    72531 1 model selected 
    72532 
    72533 > select add #2.14
    72534 
    72535 2 models selected 
    72536 
    72537 > select add #2.12
    72538 
    72539 3 models selected 
    72540 
    72541 > select add #2.17
    72542 
    72543 4 models selected 
    72544 
    72545 > select add #2.18
    72546 
    72547 5 models selected 
    72548 
    72549 > select clear
    72550 
    72551 > select #2.303
    72552 
    72553 1 model selected 
    72554 Ungrouped to 3 regions 
    72555 
    72556 > select clear
    72557 
    72558 > select #2.20
    72559 
    72560 1 model selected 
    72561 Ungrouped to 2 regions 
    72562 
    72563 > select clear
    72564 
    72565 > select #2.22
    72566 
    72567 1 model selected 
    72568 
    72569 > select add #2.11
    72570 
    72571 2 models selected 
    72572 
    72573 > select add #2.13
    72574 
    72575 3 models selected 
    72576 
    72577 > select clear
    72578 
    72579 > select #2.163
    72580 
    72581 1 model selected 
    72582 
    72583 > select subtract #2.163
    72584 
    72585 Nothing selected 
    72586 
    72587 > select #2.156
    72588 
    72589 1 model selected 
    72590 
    72591 > select add #2.165
    72592 
    72593 2 models selected 
    72594 
    72595 > select add #2.163
    72596 
    72597 3 models selected 
    72598 
    72599 > select add #2.170
    72600 
    72601 4 models selected 
    72602 
    72603 > select add #2.155
    72604 
    72605 5 models selected 
    72606 
    72607 > select add #2.108
    72608 
    72609 6 models selected 
    72610 
    72611 > select add #2.227
    72612 
    72613 7 models selected 
    72614 
    72615 > select add #2.228
    72616 
    72617 8 models selected 
    72618 
    72619 > select add #2.164
    72620 
    72621 9 models selected 
    72622 
    72623 > select add #2.169
    72624 
    72625 10 models selected 
    72626 
    72627 > select add #2.159
    72628 
    72629 11 models selected 
    72630 
    72631 > select add #2.229
    72632 
    72633 12 models selected 
    72634 
    72635 > select add #2.230
    72636 
    72637 13 models selected 
    72638 
    72639 > select add #2.166
    72640 
    72641 14 models selected 
    72642 
    72643 > select add #2.167
    72644 
    72645 15 models selected 
    72646 Grouped 15 regions 
    72647 
    72648 > select add #2.16
    72649 
    72650 2 models selected 
    72651 
    72652 > select add #2.5
    72653 
    72654 3 models selected 
    72655 
    72656 > select add #2.158
    72657 
    72658 4 models selected 
    72659 
    72660 > select add #2.119
    72661 
    72662 5 models selected 
    72663 
    72664 > select add #2.23
    72665 
    72666 6 models selected 
    72667 
    72668 > select add #2.7
    72669 
    72670 7 models selected 
    72671 
    72672 > select add #2.143
    72673 
    72674 8 models selected 
    72675 
    72676 > select add #2.151
    72677 
    72678 9 models selected 
    72679 
    72680 > select add #2.150
    72681 
    72682 10 models selected 
    72683 
    72684 > select add #2.162
    72685 
    72686 11 models selected 
    72687 
    72688 > select add #2.135
    72689 
    72690 12 models selected 
    72691 
    72692 > select subtract #2.135
    72693 
    72694 11 models selected 
    72695 
    72696 > select add #2.135
    72697 
    72698 12 models selected 
    72699 
    72700 > select add #2.136
    72701 
    72702 13 models selected 
    72703 
    72704 > select add #2.157
    72705 
    72706 14 models selected 
    72707 
    72708 > select add #2.145
    72709 
    72710 15 models selected 
    72711 
    72712 > select subtract #2.145
    72713 
    72714 14 models selected 
    72715 
    72716 > select add #2.145
    72717 
    72718 15 models selected 
    72719 
    72720 > select add #2.140
    72721 
    72722 16 models selected 
    72723 
    72724 > select add #2.168
    72725 
    72726 17 models selected 
    72727 
    72728 > select add #2.161
    72729 
    72730 18 models selected 
    72731 
    72732 > select add #2.160
    72733 
    72734 19 models selected 
    72735 
    72736 > select add #2.208
    72737 
    72738 20 models selected 
    72739 
    72740 > select add #2.207
    72741 
    72742 21 models selected 
    72743 
    72744 > select add #2.144
    72745 
    72746 22 models selected 
    72747 
    72748 > select add #2.148
    72749 
    72750 23 models selected 
    72751 
    72752 > select add #2.1
    72753 
    72754 24 models selected 
    72755 Grouped 24 regions 
    72756 
    72757 > select clear
    72758 
    72759 > select #2.1
    72760 
    72761 1 model selected 
    72762 
    72763 > select clear
    72764 
    72765 [Repeated 1 time(s)]
    72766 
    72767 > select #2.1
    72768 
    72769 1 model selected 
    72770 Showing 264 region surfaces 
    72771 Opened
    72772 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    72773 as #34, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    72774 
    72775 The cached device pixel ratio value was stale on window expose. Please file a
    72776 QTBUG which explains how to reproduce. 
    72777 
    72778 > save /Users/shoichitachiyama/Desktop/tmp/MS-ring.mrc models #34
    72779 
    72780 Opened
    72781 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    72782 as #35, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    72783 Segmenting
    72784 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    72785 density threshold 0.010668 
    72786 Showing 140 region surfaces 
    72787 1779 watershed regions, grouped to 140 regions 
    72788 Showing
    72789 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    72790 - 140 regions, 140 surfaces 
    72791 
    72792 > hide #!34 models
    72793 
    72794 > hide #!35 models
    72795 
    72796 > select #2.72
    72797 
    72798 1 model selected 
    72799 
    72800 > select add #2.76
    72801 
    72802 2 models selected 
    72803 
    72804 > select add #2.65
    72805 
    72806 3 models selected 
    72807 
    72808 > select add #2.77
    72809 
    72810 4 models selected 
    72811 
    72812 > select add #2.78
    72813 
    72814 5 models selected 
    72815 
    72816 > select add #2.67
    72817 
    72818 6 models selected 
    72819 
    72820 > select add #2.69
    72821 
    72822 7 models selected 
    72823 
    72824 > select add #2.82
    72825 
    72826 8 models selected 
    72827 
    72828 > select add #2.84
    72829 
    72830 9 models selected 
    72831 
    72832 > select add #2.70
    72833 
    72834 10 models selected 
    72835 
    72836 > select add #2.75
    72837 
    72838 11 models selected 
    72839 
    72840 > select add #2.80
    72841 
    72842 12 models selected 
    72843 
    72844 > select add #2.74
    72845 
    72846 13 models selected 
    72847 
    72848 > select add #2.73
    72849 
    72850 14 models selected 
    72851 
    72852 > select add #2.68
    72853 
    72854 15 models selected 
    72855 
    72856 > select add #2.66
    72857 
    72858 16 models selected 
    72859 
    72860 > select add #2.79
    72861 
    72862 17 models selected 
    72863 Ungrouped to 43 regions 
    72864 Ungrouped to 36 regions 
    72865 Ungrouped to 14 regions 
    72866 Ungrouped to 0 regions 
    72867 
    72868 > select #2.79
    72869 
    72870 1 model selected 
    72871 
    72872 > select add #2.152
    72873 
    72874 2 models selected 
    72875 
    72876 > select #2.183
    72877 
    72878 1 model selected 
    72879 
    72880 > select #2.70
    72881 
    72882 1 model selected 
    72883 
    72884 > select add #2.183
    72885 
    72886 2 models selected 
    72887 Grouped 2 regions 
    72888 Ungrouped to 2 regions 
    72889 Ungrouped to 0 regions 
    72890 
    72891 > select #2.146
    72892 
    72893 1 model selected 
    72894 
    72895 > select add #2.158
    72896 
    72897 2 models selected 
    72898 
    72899 > select add #2.143
    72900 
    72901 3 models selected 
    72902 
    72903 > select add #2.84
    72904 
    72905 4 models selected 
    72906 Ungrouped to 0 regions 
    72907 
    72908 > select #2.79
    72909 
    72910 1 model selected 
    72911 
    72912 > select add #2.178
    72913 
    72914 2 models selected 
    72915 
    72916 > select add #2.68
    72917 
    72918 3 models selected 
    72919 
    72920 > select add #2.190
    72921 
    72922 4 models selected 
    72923 
    72924 > select add #2.146
    72925 
    72926 5 models selected 
    72927 
    72928 > select add #2.158
    72929 
    72930 6 models selected 
    72931 
    72932 > select add #2.143
    72933 
    72934 7 models selected 
    72935 
    72936 > select add #2.84
    72937 
    72938 8 models selected 
    72939 
    72940 > select add #2.77
    72941 
    72942 9 models selected 
    72943 
    72944 > select add #2.78
    72945 
    72946 10 models selected 
    72947 
    72948 > select add #2.200
    72949 
    72950 11 models selected 
    72951 
    72952 > select add #2.198
    72953 
    72954 12 models selected 
    72955 
    72956 > select add #2.165
    72957 
    72958 13 models selected 
    72959 
    72960 > select add #2.160
    72961 
    72962 14 models selected 
    72963 
    72964 > select add #2.151
    72965 
    72966 15 models selected 
    72967 
    72968 > select add #2.174
    72969 
    72970 16 models selected 
    72971 
    72972 > select add #2.187
    72973 
    72974 17 models selected 
    72975 
    72976 > select subtract #2.79
    72977 
    72978 16 models selected 
    72979 
    72980 > select add #2.79
    72981 
    72982 17 models selected 
    72983 Ungrouped to 0 regions 
    72984 
    72985 > select #2.79
    72986 
    72987 1 model selected 
    72988 
    72989 > select add #2.187
    72990 
    72991 2 models selected 
    72992 
    72993 > select add #2.174
    72994 
    72995 3 models selected 
    72996 
    72997 > select add #2.151
    72998 
    72999 4 models selected 
    73000 
    73001 > select add #2.160
    73002 
    73003 5 models selected 
    73004 
    73005 > select add #2.165
    73006 
    73007 6 models selected 
    73008 
    73009 > select add #2.198
    73010 
    73011 7 models selected 
    73012 
    73013 > select add #2.200
    73014 
    73015 8 models selected 
    73016 
    73017 > select add #2.78
    73018 
    73019 9 models selected 
    73020 
    73021 > select add #2.77
    73022 
    73023 10 models selected 
    73024 
    73025 > select add #2.84
    73026 
    73027 11 models selected 
    73028 
    73029 > select add #2.143
    73030 
    73031 12 models selected 
    73032 
    73033 > select add #2.158
    73034 
    73035 13 models selected 
    73036 
    73037 > select add #2.146
    73038 
    73039 14 models selected 
    73040 
    73041 > select add #2.190
    73042 
    73043 15 models selected 
    73044 
    73045 > select add #2.68
    73046 
    73047 16 models selected 
    73048 
    73049 > select add #2.178
    73050 
    73051 17 models selected 
    73052 Grouped 17 regions 
    73053 
    73054 > select add #2.113
    73055 
    73056 2 models selected 
    73057 
    73058 > select add #2.116
    73059 
    73060 3 models selected 
    73061 
    73062 > select add #2.105
    73063 
    73064 4 models selected 
    73065 
    73066 > select add #2.115
    73067 
    73068 5 models selected 
    73069 
    73070 > select add #2.138
    73071 
    73072 6 models selected 
    73073 
    73074 > select add #2.135
    73075 
    73076 7 models selected 
    73077 
    73078 > select add #2.136
    73079 
    73080 8 models selected 
    73081 
    73082 > select add #2.134
    73083 
    73084 9 models selected 
    73085 
    73086 > select add #2.139
    73087 
    73088 10 models selected 
    73089 
    73090 > select add #2.133
    73091 
    73092 11 models selected 
    73093 
    73094 > select add #2.137
    73095 
    73096 12 models selected 
    73097 
    73098 > select add #2.117
    73099 
    73100 13 models selected 
    73101 Grouped 13 regions 
    73102 Opened
    73103 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    73104 as #36, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    73105 
    73106 The cached device pixel ratio value was stale on window expose. Please file a
    73107 QTBUG which explains how to reproduce. 
    73108 
    73109 > save /Users/shoichitachiyama/Desktop/tmp/E-ring.mrc models #36
    73110 
    73111 Opened
    73112 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    73113 as #37, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    73114 Segmenting
    73115 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    73116 density threshold 0.010668 
    73117 Showing 128 region surfaces 
    73118 1745 watershed regions, grouped to 128 regions 
    73119 Showing
    73120 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    73121 - 128 regions, 128 surfaces 
    73122 
    73123 > hide #!36 models
    73124 
    73125 > hide #!37 models
    73126 
    73127 > show #!32 models
    73128 
    73129 > show #!25 models
    73130 
    73131 > hide #!25 models
    73132 
    73133 > select #2.73
    73134 
    73135 1 model selected 
    73136 
    73137 > select add #2.47
    73138 
    73139 2 models selected 
    73140 Ungrouped to 5 regions 
    73141 Ungrouped to 6 regions 
    73142 Ungrouped to 0 regions 
    73143 
    73144 > select #2.133
    73145 
    73146 1 model selected 
    73147 
    73148 > select add #2.73
    73149 
    73150 2 models selected 
    73151 Grouped 2 regions 
    73152 
    73153 > show #!24 models
    73154 
    73155 > hide #!24 models
    73156 
    73157 > show #!25 models
    73158 
    73159 > select #2.61
    73160 
    73161 1 model selected 
    73162 
    73163 > select #2.124
    73164 
    73165 1 model selected 
    73166 
    73167 > select #2.47
    73168 
    73169 1 model selected 
    73170 Ungrouped to 0 regions 
    73171 
    73172 > select #2.73
    73173 
    73174 1 model selected 
    73175 
    73176 > select add #2.47
    73177 
    73178 2 models selected 
    73179 
    73180 > select add #2.124
    73181 
    73182 3 models selected 
    73183 
    73184 > select add #2.135
    73185 
    73186 4 models selected 
    73187 
    73188 > select add #2.129
    73189 
    73190 5 models selected 
    73191 
    73192 > select add #2.96
    73193 
    73194 6 models selected 
    73195 
    73196 > select add #2.134
    73197 
    73198 7 models selected 
    73199 
    73200 > select #2.39
    73201 
    73202 1 model selected 
    73203 Ungrouped to 3 regions 
    73204 Ungrouped to 5 regions 
    73205 Ungrouped to 8 regions 
    73206 Ungrouped to 5 regions 
    73207 
    73208 > select #2.140
    73209 
    73210 1 model selected 
    73211 Showing 147 region surfaces 
    73212 
    73213 > select add #2.47
    73214 
    73215 2 models selected 
    73216 
    73217 > select add #2.73
    73218 
    73219 3 models selected 
    73220 
    73221 > select add #2.124
    73222 
    73223 4 models selected 
    73224 
    73225 > select add #2.135
    73226 
    73227 5 models selected 
    73228 
    73229 > select add #2.129
    73230 
    73231 6 models selected 
    73232 
    73233 > select add #2.134
    73234 
    73235 7 models selected 
    73236 
    73237 > select add #2.96
    73238 
    73239 8 models selected 
    73240 
    73241 > hide #!25 models
    73242 
    73243 Opened
    73244 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    73245 as #38, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    73246 
    73247 The cached device pixel ratio value was stale on window expose. Please file a
    73248 QTBUG which explains how to reproduce. 
    73249 
    73250 > save /Users/shoichitachiyama/Desktop/tmp/1unit_PflAB_FliL.mrc models #38
    73251 
    73252 > select clear
    73253 
    73254 > select #2.73
    73255 
    73256 1 model selected 
    73257 
    73258 > select add #2.140
    73259 
    73260 2 models selected 
    73261 
    73262 > select add #2.47
    73263 
    73264 3 models selected 
    73265 Opened
    73266 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    73267 as #39, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    73268 
    73269 The cached device pixel ratio value was stale on window expose. Please file a
    73270 QTBUG which explains how to reproduce. 
    73271 
    73272 > save /Users/shoichitachiyama/Desktop/tmp/FliL_out.mrc models #39
    73273 
    73274 > select #2.47
    73275 
    73276 1 model selected 
    73277 
    73278 > select add #2.124
    73279 
    73280 2 models selected 
    73281 
    73282 > select add #2.135
    73283 
    73284 3 models selected 
    73285 
    73286 > select add #2.134
    73287 
    73288 4 models selected 
    73289 
    73290 > select add #2.61
    73291 
    73292 5 models selected 
    73293 
    73294 > select subtract #2.61
    73295 
    73296 4 models selected 
    73297 
    73298 > select add #2.61
    73299 
    73300 5 models selected 
    73301 
    73302 > select subtract #2.61
    73303 
    73304 4 models selected 
    73305 
    73306 > select clear
    73307 
    73308 > select #2.61
    73309 
    73310 1 model selected 
    73311 
    73312 > select clear
    73313 
    73314 > select #2.124
    73315 
    73316 1 model selected 
    73317 
    73318 > select add #2.47
    73319 
    73320 2 models selected 
    73321 
    73322 > select add #2.135
    73323 
    73324 3 models selected 
    73325 
    73326 > select add #2.129
    73327 
    73328 4 models selected 
    73329 
    73330 > select add #2.73
    73331 
    73332 5 models selected 
    73333 
    73334 > select add #2.96
    73335 
    73336 6 models selected 
    73337 
    73338 > select add #2.134
    73339 
    73340 7 models selected 
    73341 
    73342 > select add #2.61
    73343 
    73344 8 models selected 
    73345 
    73346 > select clear
    73347 
    73348 > select #2.61
    73349 
    73350 1 model selected 
    73351 Ungrouped to 2 regions 
    73352 
    73353 > select #2.134
    73354 
    73355 1 model selected 
    73356 
    73357 > select add #2.124
    73358 
    73359 2 models selected 
    73360 
    73361 > select add #2.135
    73362 
    73363 3 models selected 
    73364 
    73365 > select add #2.47
    73366 
    73367 4 models selected 
    73368 Opened
    73369 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    73370 as #40, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    73371 
    73372 The cached device pixel ratio value was stale on window expose. Please file a
    73373 QTBUG which explains how to reproduce. 
    73374 
    73375 > save /Users/shoichitachiyama/Desktop/tmp/1unit_rim.mrc models #40
    73376 
    73377 > select #2.129
    73378 
    73379 1 model selected 
    73380 
    73381 > select add #2.96
    73382 
    73383 2 models selected 
    73384 Opened
    73385 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    73386 as #41, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    73387 
    73388 The cached device pixel ratio value was stale on window expose. Please file a
    73389 QTBUG which explains how to reproduce. 
    73390 
    73391 > save /Users/shoichitachiyama/Desktop/tmp/1unit_PflA.mrc models #41
    73392 
    73393 > select clear
    73394 
    73395 > select #2.73
    73396 
    73397 1 model selected 
    73398 
    73399 > select add #2.120
    73400 
    73401 2 models selected 
    73402 
    73403 > select add #2.47
    73404 
    73405 3 models selected 
    73406 
    73407 > select add #2.129
    73408 
    73409 4 models selected 
    73410 
    73411 > select add #2.135
    73412 
    73413 5 models selected 
    73414 
    73415 > select add #2.96
    73416 
    73417 6 models selected 
    73418 
    73419 > select add #2.134
    73420 
    73421 7 models selected 
    73422 
    73423 > select add #2.124
    73424 
    73425 8 models selected 
    73426 
    73427 > select add #2.92
    73428 
    73429 9 models selected 
    73430 
    73431 > select add #2.105
    73432 
    73433 10 models selected 
    73434 
    73435 > select add #2.115
    73436 
    73437 11 models selected 
    73438 
    73439 > select add #2.62
    73440 
    73441 12 models selected 
    73442 
    73443 > select add #2.99
    73444 
    73445 13 models selected 
    73446 
    73447 > select add #2.86
    73448 
    73449 14 models selected 
    73450 
    73451 > select add #2.79
    73452 
    73453 15 models selected 
    73454 
    73455 > select add #2.88
    73456 
    73457 16 models selected 
    73458 
    73459 > select add #2.87
    73460 
    73461 17 models selected 
    73462 
    73463 > select add #2.78
    73464 
    73465 18 models selected 
    73466 
    73467 > select add #2.103
    73468 
    73469 19 models selected 
    73470 
    73471 > select add #2.126
    73472 
    73473 20 models selected 
    73474 
    73475 > select add #2.60
    73476 
    73477 21 models selected 
    73478 
    73479 > select add #2.114
    73480 
    73481 22 models selected 
    73482 
    73483 > select add #2.49
    73484 
    73485 23 models selected 
    73486 
    73487 > select add #2.89
    73488 
    73489 24 models selected 
    73490 
    73491 > select add #2.85
    73492 
    73493 25 models selected 
    73494 
    73495 > select add #2.127
    73496 
    73497 26 models selected 
    73498 
    73499 > select add #2.95
    73500 
    73501 27 models selected 
    73502 
    73503 > select add #2.116
    73504 
    73505 28 models selected 
    73506 
    73507 > select add #2.91
    73508 
    73509 29 models selected 
    73510 
    73511 > select add #2.94
    73512 
    73513 30 models selected 
    73514 
    73515 > select add #2.56
    73516 
    73517 31 models selected 
    73518 
    73519 > select add #2.104
    73520 
    73521 32 models selected 
    73522 
    73523 > select add #2.121
    73524 
    73525 33 models selected 
    73526 
    73527 > select add #2.122
    73528 
    73529 34 models selected 
    73530 
    73531 > select add #2.52
    73532 
    73533 35 models selected 
    73534 
    73535 > select add #2.101
    73536 
    73537 36 models selected 
    73538 
    73539 > select add #2.113
    73540 
    73541 37 models selected 
    73542 
    73543 > select add #2.54
    73544 
    73545 38 models selected 
    73546 
    73547 > select add #2.97
    73548 
    73549 39 models selected 
    73550 
    73551 > select add #2.117
    73552 
    73553 40 models selected 
    73554 
    73555 > select add #2.53
    73556 
    73557 41 models selected 
    73558 
    73559 > select add #2.108
    73560 
    73561 42 models selected 
    73562 
    73563 > select add #2.118
    73564 
    73565 43 models selected 
    73566 
    73567 > select add #2.45
    73568 
    73569 44 models selected 
    73570 
    73571 > select add #2.106
    73572 
    73573 45 models selected 
    73574 
    73575 > select add #2.123
    73576 
    73577 46 models selected 
    73578 
    73579 > select add #2.44
    73580 
    73581 47 models selected 
    73582 
    73583 > select add #2.98
    73584 
    73585 48 models selected 
    73586 
    73587 > select add #2.119
    73588 
    73589 49 models selected 
    73590 
    73591 > select add #2.51
    73592 
    73593 50 models selected 
    73594 
    73595 > select add #2.90
    73596 
    73597 51 models selected 
    73598 
    73599 > select add #2.125
    73600 
    73601 52 models selected 
    73602 
    73603 > select add #2.48
    73604 
    73605 53 models selected 
    73606 
    73607 > select add #2.102
    73608 
    73609 54 models selected 
    73610 
    73611 > hide #!32 models
    73612 
    73613 > hide #!38 models
    73614 
    73615 > hide #!39 models
    73616 
    73617 > hide #!40 models
    73618 
    73619 > select add #2.93
    73620 
    73621 55 models selected 
    73622 Grouped 55 regions 
    73623 
    73624 > select #2.141
    73625 
    73626 1 model selected 
    73627 Grouped 1 regions 
    73628 Showing 94 region surfaces 
    73629 
    73630 > select subtract #2.45
    73631 
    73632 Nothing selected 
    73633 
    73634 The cached device pixel ratio value was stale on window expose. Please file a
    73635 QTBUG which explains how to reproduce. 
    73636 
    73637 > select #2.45
    73638 
    73639 1 model selected 
    73640 
    73641 > select add #2.44
    73642 
    73643 2 models selected 
    73644 Grouped 2 regions 
    73645 
    73646 > select #2.44
    73647 
    73648 1 model selected 
    73649 
    73650 > select #2.58
    73651 
    73652 1 model selected 
    73653 Ungrouped to 3 regions 
    73654 
    73655 > select #2.47
    73656 
    73657 1 model selected 
    73658 
    73659 > select add #2.45
    73660 
    73661 2 models selected 
    73662 
    73663 > select add #2.44
    73664 
    73665 3 models selected 
    73666 Grouped 3 regions 
    73667 
    73668 > select #2.43
    73669 
    73670 1 model selected 
    73671 Ungrouped to 3 regions 
    73672 
    73673 > select #2.47
    73674 
    73675 1 model selected 
    73676 
    73677 > select add #2.44
    73678 
    73679 2 models selected 
    73680 Grouped 2 regions 
    73681 
    73682 > select #2.66
    73683 
    73684 1 model selected 
    73685 Ungrouped to 3 regions 
    73686 
    73687 > select #2.44
    73688 
    73689 1 model selected 
    73690 
    73691 > select add #2.47
    73692 
    73693 2 models selected 
    73694 
    73695 > select add #2.43
    73696 
    73697 3 models selected 
    73698 Grouped 3 regions 
    73699 
    73700 > select #2.67
    73701 
    73702 1 model selected 
    73703 Ungrouped to 3 regions 
    73704 
    73705 > select #2.44
    73706 
    73707 1 model selected 
    73708 
    73709 > select add #2.43
    73710 
    73711 2 models selected 
    73712 Grouped 2 regions 
    73713 
    73714 > select add #2.59
    73715 
    73716 2 models selected 
    73717 
    73718 > select #2.59
    73719 
    73720 1 model selected 
    73721 Ungrouped to 3 regions 
    73722 
    73723 > select #2.53
    73724 
    73725 1 model selected 
    73726 
    73727 > select add #2.44
    73728 
    73729 2 models selected 
    73730 
    73731 > select add #2.43
    73732 
    73733 3 models selected 
    73734 Grouped 3 regions 
    73735 
    73736 > select #2.64
    73737 
    73738 1 model selected 
    73739 
    73740 > select add #2.46
    73741 
    73742 2 models selected 
    73743 Ungrouped to 7 regions 
    73744 
    73745 > select #2.61
    73746 
    73747 1 model selected 
    73748 
    73749 > select add #2.53
    73750 
    73751 2 models selected 
    73752 
    73753 > select add #2.58
    73754 
    73755 3 models selected 
    73756 
    73757 > select add #2.43
    73758 
    73759 4 models selected 
    73760 Grouped 4 regions 
    73761 
    73762 > select #2.55
    73763 
    73764 1 model selected 
    73765 Ungrouped to 3 regions 
    73766 
    73767 > select #2.53
    73768 
    73769 1 model selected 
    73770 
    73771 > select add #2.46
    73772 
    73773 2 models selected 
    73774 
    73775 > select add #2.43
    73776 
    73777 3 models selected 
    73778 Grouped 3 regions 
    73779 
    73780 > select #2.57
    73781 
    73782 1 model selected 
    73783 Ungrouped to 3 regions 
    73784 Ungrouped to 2 regions 
    73785 
    73786 > select #2.53
    73787 
    73788 1 model selected 
    73789 
    73790 > select add #2.46
    73791 
    73792 2 models selected 
    73793 
    73794 > select add #2.43
    73795 
    73796 3 models selected 
    73797 Grouped 3 regions 
    73798 
    73799 > select #2.63
    73800 
    73801 1 model selected 
    73802 Ungrouped to 3 regions 
    73803 Ungrouped to 0 regions 
    73804 
    73805 > select #2.55
    73806 
    73807 1 model selected 
    73808 
    73809 > select add #2.43
    73810 
    73811 2 models selected 
    73812 Grouped 2 regions 
    73813 
    73814 > select #2.69
    73815 
    73816 1 model selected 
    73817 Ungrouped to 2 regions 
    73818 
    73819 > select #2.62
    73820 
    73821 1 model selected 
    73822 
    73823 > select add #2.43
    73824 
    73825 2 models selected 
    73826 Grouped 2 regions 
    73827 
    73828 > select #2.68
    73829 
    73830 1 model selected 
    73831 Ungrouped to 2 regions 
    73832 
    73833 > select #2.63
    73834 
    73835 1 model selected 
    73836 
    73837 > select add #2.43
    73838 
    73839 2 models selected 
    73840 Grouped 2 regions 
    73841 
    73842 > select #2.50
    73843 
    73844 1 model selected 
    73845 Ungrouped to 3 regions 
    73846 Ungrouped to 2 regions 
    73847 
    73848 > select #2.66
    73849 
    73850 1 model selected 
    73851 
    73852 > select add #2.63
    73853 
    73854 2 models selected 
    73855 
    73856 > select add #2.43
    73857 
    73858 3 models selected 
    73859 Grouped 3 regions 
    73860 
    73861 > select #2.72
    73862 
    73863 1 model selected 
    73864 Ungrouped to 2 regions 
    73865 [Repeated 1 time(s)]
    73866 
    73867 > select #2.64
    73868 
    73869 1 model selected 
    73870 
    73871 > select add #2.43
    73872 
    73873 2 models selected 
    73874 Grouped 2 regions 
    73875 
    73876 > select add #2.30
    73877 
    73878 2 models selected 
    73879 
    73880 > select #2.43
    73881 
    73882 1 model selected 
    73883 
    73884 > select #2.65
    73885 
    73886 1 model selected 
    73887 Ungrouped to 3 regions 
    73888 Ungrouped to 2 regions 
    73889 
    73890 > select #2.69
    73891 
    73892 1 model selected 
    73893 
    73894 > select add #2.63
    73895 
    73896 2 models selected 
    73897 
    73898 > select add #2.43
    73899 
    73900 3 models selected 
    73901 Grouped 3 regions 
    73902 Opened
    73903 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    73904 as #42, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    73905 
    73906 The cached device pixel ratio value was stale on window expose. Please file a
    73907 QTBUG which explains how to reproduce. 
    73908 
    73909 > save /Users/shoichitachiyama/Desktop/tmp/C17_proximal-disk.mrc models #42
    73910 
    73911 Opened
    73912 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    73913 as #43, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    73914 Segmenting
    73915 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    73916 density threshold 0.010668 
    73917 Showing 76 region surfaces 
    73918 1581 watershed regions, grouped to 76 regions 
    73919 Showing
    73920 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    73921 - 76 regions, 76 surfaces 
    73922 
    73923 > hide #!41 models
    73924 
    73925 > hide #!42 models
    73926 
    73927 > hide #!43 models
    73928 
    73929 > select #2.28
    73930 
    73931 1 model selected 
    73932 
    73933 > select add #2.26
    73934 
    73935 2 models selected 
    73936 
    73937 > select add #2.35
    73938 
    73939 3 models selected 
    73940 
    73941 > select add #2.32
    73942 
    73943 4 models selected 
    73944 
    73945 > select add #2.36
    73946 
    73947 5 models selected 
    73948 
    73949 > select add #2.37
    73950 
    73951 6 models selected 
    73952 
    73953 > select add #2.19
    73954 
    73955 7 models selected 
    73956 
    73957 > select add #2.38
    73958 
    73959 8 models selected 
    73960 
    73961 > select subtract #2.19
    73962 
    73963 7 models selected 
    73964 
    73965 > select subtract #2.38
    73966 
    73967 6 models selected 
    73968 
    73969 > select add #2.19
    73970 
    73971 7 models selected 
    73972 
    73973 > select add #2.29
    73974 
    73975 8 models selected 
    73976 
    73977 > select add #2.40
    73978 
    73979 9 models selected 
    73980 Grouped 9 regions 
    73981 
    73982 > select add #2.38
    73983 
    73984 2 models selected 
    73985 
    73986 > select add #2.42
    73987 
    73988 3 models selected 
    73989 
    73990 > select add #2.31
    73991 
    73992 4 models selected 
    73993 
    73994 > select add #2.27
    73995 
    73996 5 models selected 
    73997 
    73998 > select add #2.41
    73999 
    74000 6 models selected 
    74001 
    74002 > select add #2.30
    74003 
    74004 7 models selected 
    74005 
    74006 > select add #2.39
    74007 
    74008 8 models selected 
    74009 
    74010 > select add #2.34
    74011 
    74012 9 models selected 
    74013 Grouped 9 regions 
    74014 Drag select of 2173, 1966, 6813 of 7104 triangles, 1965, 1976, 1947, 6356 of
    74015 6868 triangles, 1924, 1938, 3854 of 6956 triangles, 2065, 3596 of 6388
    74016 triangles, 1837, 5873 of 6204 triangles, 1672, 2076, 6011 of 6220 triangles,
    74017 2098, 4727 of 5832 triangles, 1610, 3955 of 5396 triangles, 1831, 5195 of 5548
    74018 triangles, 2052, 5648 of 5704 triangles, 1933, 5575 of 5660 triangles, 1985,
    74019 1687, 5481 of 5484 triangles 
    74020 Grouped 19 regions 
    74021 
    74022 > select add #2.61
    74023 
    74024 2 models selected 
    74025 
    74026 > select add #2.65
    74027 
    74028 3 models selected 
    74029 
    74030 > select add #2.46
    74031 
    74032 4 models selected 
    74033 
    74034 > select add #2.70
    74035 
    74036 5 models selected 
    74037 
    74038 > select add #2.68
    74039 
    74040 6 models selected 
    74041 
    74042 > select add #2.51
    74043 
    74044 7 models selected 
    74045 
    74046 > select add #2.64
    74047 
    74048 8 models selected 
    74049 
    74050 > select add #2.43
    74051 
    74052 9 models selected 
    74053 
    74054 > select add #2.67
    74055 
    74056 10 models selected 
    74057 
    74058 > select add #2.60
    74059 
    74060 11 models selected 
    74061 
    74062 > select add #2.66
    74063 
    74064 12 models selected 
    74065 
    74066 > select add #2.56
    74067 
    74068 13 models selected 
    74069 
    74070 > select add #2.59
    74071 
    74072 14 models selected 
    74073 
    74074 > select add #2.58
    74075 
    74076 15 models selected 
    74077 
    74078 > select add #2.62
    74079 
    74080 16 models selected 
    74081 
    74082 > select add #2.63
    74083 
    74084 17 models selected 
    74085 Grouped 17 regions 
    74086 
    74087 > select #2.17
    74088 
    74089 1 model selected 
    74090 
    74091 > select add #2.20
    74092 
    74093 2 models selected 
    74094 
    74095 > select add #2.14
    74096 
    74097 3 models selected 
    74098 
    74099 > select add #2.33
    74100 
    74101 4 models selected 
    74102 
    74103 > select add #2.15
    74104 
    74105 5 models selected 
    74106 
    74107 > select add #2.24
    74108 
    74109 6 models selected 
    74110 
    74111 > select add #2.5
    74112 
    74113 7 models selected 
    74114 
    74115 > select add #2.12
    74116 
    74117 8 models selected 
    74118 
    74119 > select add #2.22
    74120 
    74121 9 models selected 
    74122 
    74123 > select add #2.6
    74124 
    74125 10 models selected 
    74126 
    74127 > select add #2.16
    74128 
    74129 11 models selected 
    74130 
    74131 > select add #2.21
    74132 
    74133 12 models selected 
    74134 
    74135 > select add #2.10
    74136 
    74137 13 models selected 
    74138 
    74139 > select add #2.8
    74140 
    74141 14 models selected 
    74142 
    74143 > select add #2.4
    74144 
    74145 15 models selected 
    74146 
    74147 > select add #2.9
    74148 
    74149 16 models selected 
    74150 
    74151 > select add #2.3
    74152 
    74153 17 models selected 
    74154 
    74155 > select add #2.2
    74156 
    74157 18 models selected 
    74158 
    74159 > select add #2.18
    74160 
    74161 19 models selected 
    74162 
    74163 > select add #2.11
    74164 
    74165 20 models selected 
    74166 
    74167 > select add #2.25
    74168 
    74169 21 models selected 
    74170 
    74171 > select add #2.13
    74172 
    74173 22 models selected 
    74174 
    74175 > select add #2.23
    74176 
    74177 23 models selected 
    74178 
    74179 > select add #2.7
    74180 
    74181 24 models selected 
    74182 
    74183 > select subtract #2.7
    74184 
    74185 23 models selected 
    74186 
    74187 > select add #2.7
    74188 
    74189 24 models selected 
    74190 Ungrouped to 79 regions 
    74191 
    74192 > select subtract #2.19
    74193 
    74194 78 models selected 
    74195 
    74196 > select subtract #2.87
    74197 
    74198 77 models selected 
    74199 
    74200 > select subtract #2.54
    74201 
    74202 76 models selected 
    74203 
    74204 > select subtract #2.45
    74205 
    74206 75 models selected 
    74207 
    74208 > select subtract #2.28
    74209 
    74210 74 models selected 
    74211 
    74212 > select add #2.28
    74213 
    74214 75 models selected 
    74215 
    74216 > select subtract #2.104
    74217 
    74218 74 models selected 
    74219 
    74220 > select subtract #2.81
    74221 
    74222 73 models selected 
    74223 
    74224 > select subtract #2.95
    74225 
    74226 72 models selected 
    74227 
    74228 > select subtract #2.47
    74229 
    74230 71 models selected 
    74231 Ungrouped to 268 regions 
    74232 Ungrouped to 643 regions 
    74233 Ungrouped to 499 regions 
    74234 Ungrouped to 0 regions 
    74235 Ungrouped to 4 regions 
    74236 Ungrouped to 36 regions 
    74237 Drag select of 10, 40, 134, 112 of 236 triangles, 19, 13, 119, 94 of 168
    74238 triangles, 97, 205 of 716 triangles, 1, 27, 88, 390 of 696 triangles, 107, 116
    74239 of 392 triangles, 20, 1064 of 1684 triangles, 145, 38 of 604 triangles, 141,
    74240 119 of 1296 triangles, 38, 192 of 468 triangles, 25, 156 of 160 triangles, 80,
    74241 354 of 440 triangles, 17, 50, 116 of 600 triangles, 51, 15 of 1608 triangles,
    74242 64, 478 of 664 triangles, 142, 125 of 228 triangles, 46, 379 of 452 triangles,
    74243 21, 47, 583 of 1332 triangles, 81, 374 of 420 triangles, 122, 226 of 668
    74244 triangles, 26, 1010 of 1480 triangles, 140, 75 of 364 triangles, 174, 13 of
    74245 316 triangles, 68, 178 of 180 triangles, 7, 8, 36, 615 of 1248 triangles, 37,
    74246 494 of 592 triangles, 120, 205 of 4436 triangles, 84, 14, 60, 42 of 428
    74247 triangles, 91, 89 of 276 triangles, 3, 5, 41, 679 of 864 triangles, 15, 9, 31,
    74248 65 of 516 triangles, 100, 537 of 1176 triangles, 63, 841 of 868 triangles, 24,
    74249 65, 898 of 1640 triangles, 61, 123, 199 of 244 triangles, 110, 8 of 80
    74250 triangles, 39, 448 of 1524 triangles, 170, 78 of 724 triangles, 86, 429 of 500
    74251 triangles, 101, 321 of 664 triangles, 143, 87 of 96 triangles, 106, 200 of 636
    74252 triangles, 2, 151 of 552 triangles, 49, 128 of 836 triangles, 109, 37 of 596
    74253 triangles, 96, 89 of 420 triangles, 79, 199 of 376 triangles, 18, 127, 28 of
    74254 756 triangles, 172, 45 of 400 triangles, 103, 405 of 844 triangles, 137, 25 of
    74255 588 triangles, 85, 461 of 492 triangles, 126, 308 of 600 triangles, 166, 15 of
    74256 268 triangles 
    74257 Drag select of 35, 299 of 504 triangles, 12, 77, 132 of 192 triangles, 16,
    74258 124, 72 of 696 triangles, 44, 375 of 564 triangles, 125, 10 of 1424 triangles,
    74259 271, 46 of 1112 triangles, 214, 210 of 1024 triangles, 153, 315 of 1276
    74260 triangles, 30, 18 of 136 triangles, 11, 257 of 588 triangles, 274, 173 of 2996
    74261 triangles, 83, 246 of 364 triangles, 98, 137 of 160 triangles, 193, 624 of 904
    74262 triangles, 360, 25 of 1840 triangles, 147, 23, 305 of 332 triangles, 32, 79 of
    74263 532 triangles, 4, 433 of 596 triangles, 173, 662 of 1272 triangles, 28, 791 of
    74264 2164 triangles, 182, 26 of 1932 triangles, 43, 400 of 468 triangles, 131, 140
    74265 of 420 triangles, 22, 282 of 976 triangles, 55, 102 of 1208 triangles, 162,
    74266 486 of 1088 triangles, 237, 351 of 2300 triangles, 176, 367 of 480 triangles,
    74267 201, 402 of 648 triangles, 138, 22 of 56 triangles, 111, 578 of 680 triangles,
    74268 191, 631 of 1104 triangles, 240, 363 of 5172 triangles, 161, 141 of 948
    74269 triangles, 92, 409 of 448 triangles, 154, 132 of 200 triangles, 62, 691 of
    74270 1468 triangles, 42, 429 of 488 triangles, 54, 21 of 344 triangles, 158, 279,
    74271 136 of 1276 triangles, 95, 73 of 80 triangles, 74, 575 of 1396 triangles, 242,
    74272 471 of 1304 triangles, 33, 56, 287 of 436 triangles, 179, 358 of 660
    74273 triangles, 209, 208, 259 of 724 triangles, 149, 297 of 2028 triangles, 116, 45
    74274 of 464 triangles, 82, 379 of 380 triangles, 163, 93 of 392 triangles, 121, 259
    74275 of 524 triangles, 66, 44 of 1092 triangles, 29, 296 of 724 triangles, 202, 434
    74276 of 1632 triangles, 205, 398 of 1648 triangles, 177, 321, 161 of 460 triangles,
    74277 318, 276 of 2068 triangles, 278, 214 of 2840 triangles, 244, 441 of 824
    74278 triangles, 160, 210 of 680 triangles, 159, 230 of 644 triangles, 34, 208 of
    74279 584 triangles, 57, 150 of 1144 triangles, 78, 5 of 216 triangles, 52, 708 of
    74280 1080 triangles, 235, 145 of 3672 triangles, 270, 12 of 300 triangles, 99, 304
    74281 of 692 triangles, 45, 183 of 404 triangles, 364, 9 of 1588 triangles, 59, 288
    74282 of 972 triangles, 58, 466 of 1252 triangles, 212, 254 of 2236 triangles, 150,
    74283 221 of 364 triangles, 250, 142 of 624 triangles, 290, 138 of 3772 triangles,
    74284 291, 10 of 976 triangles, 322, 62 of 856 triangles, 280, 213 of 3872
    74285 triangles, 136, 441 of 2104 triangles, 239, 262 of 1672 triangles, 282, 359 of
    74286 1168 triangles, 283, 136 of 3160 triangles, 135, 421 of 1468 triangles, 313,
    74287 220 of 840 triangles, 6, 392 of 480 triangles, 315, 15 of 1128 triangles, 241,
    74288 135 of 188 triangles, 249, 190 of 416 triangles, 253, 5 of 532 triangles, 216,
    74289 13 of 4072 triangles, 139, 242 of 572 triangles, 200, 435 of 708 triangles,
    74290 284, 212 of 1680 triangles, 164, 102 of 576 triangles, 189, 360 of 820
    74291 triangles, 180, 134 of 1468 triangles, 256, 6 of 1368 triangles, 326, 29 of
    74292 1048 triangles, 325, 78 of 4324 triangles, 195, 446 of 728 triangles, 243, 371
    74293 of 1716 triangles, 192, 428 of 2648 triangles, 197, 488 of 1564 triangles,
    74294 281, 227 of 696 triangles 
    74295 Drag select of 2195, 694 of 309624 triangles, 76, 52 of 56 triangles, 48, 180
    74296 of 496 triangles, 351, 145 of 4372 triangles, 411, 221 of 504 triangles, 190,
    74297 197 of 1036 triangles, 72, 25 of 236 triangles, 269, 86 of 952 triangles, 102,
    74298 28 of 80 triangles, 219, 493 of 920 triangles, 71, 104 of 1228 triangles, 73,
    74299 129 of 732 triangles, 353, 93, 25 of 56 triangles, 502, 91 of 864 triangles,
    74300 358, 612 of 3084 triangles, 378, 405 of 2868 triangles, 70, 133 of 1388
    74301 triangles, 327, 642 of 7304 triangles, 53, 122 of 184 triangles, 94, 246 of
    74302 1024 triangles, 117, 51 of 56 triangles, 157, 10 of 988 triangles, 511, 149 of
    74303 3000 triangles, 468, 305 of 496 triangles, 186, 71 of 748 triangles, 133, 180
    74304 of 508 triangles, 508, 111 of 2712 triangles, 155, 323 of 380 triangles, 420,
    74305 1006 of 3276 triangles, 390, 371 of 2724 triangles, 331, 480, 127 of 644
    74306 triangles, 183, 403 of 596 triangles, 221, 258 of 772 triangles, 156, 102 of
    74307 612 triangles, 227, 113 of 768 triangles, 224, 78 of 880 triangles, 231, 6 of
    74308 148 triangles, 69, 191 of 1220 triangles, 366, 356 of 1076 triangles, 436, 692
    74309 of 4728 triangles, 467, 533 of 1448 triangles, 104, 55 of 580 triangles, 296,
    74310 493 of 2656 triangles, 447, 41 of 1084 triangles, 341, 23 of 3192 triangles,
    74311 165, 232 of 704 triangles, 234, 157 of 596 triangles, 232, 282 of 1584
    74312 triangles, 473, 386 of 1084 triangles, 342, 75 of 512 triangles, 333, 512, 93
    74313 of 2128 triangles, 328, 408 of 1296 triangles, 506, 38 of 5116 triangles, 226,
    74314 66 of 468 triangles, 354, 25 of 6592 triangles, 308, 159 of 3916 triangles,
    74315 223, 222 of 1136 triangles, 419, 611 of 4292 triangles, 339, 119 of 304
    74316 triangles, 336, 143 of 1552 triangles, 418, 295 of 484 triangles, 75, 66 of 80
    74317 triangles, 509, 165 of 2632 triangles, 340, 41 of 1900 triangles, 259, 275 of
    74318 664 triangles, 255, 337, 176 of 464 triangles, 87, 4 of 188 triangles, 67, 132
    74319 of 1124 triangles, 518, 18 of 228 triangles, 225, 85 of 564 triangles, 267,
    74320 406 of 1236 triangles, 236, 265 of 2832 triangles, 384, 210 of 244 triangles,
    74321 437, 479 of 1644 triangles, 393, 398 of 3164 triangles, 510, 174 of 2680
    74322 triangles, 355, 74 of 420 triangles, 356, 61 of 2328 triangles, 412, 9 of 1496
    74323 triangles, 268, 355 of 1268 triangles, 300, 119 of 1184 triangles, 471, 227 of
    74324 2528 triangles, 181, 254 of 292 triangles, 218, 418 of 876 triangles, 167, 59
    74325 of 1088 triangles, 472, 475 of 1152 triangles, 423, 622 of 2468 triangles,
    74326 263, 76 of 2164 triangles, 272, 363 of 1320 triangles, 332, 227 of 4892
    74327 triangles 
    74328 
    74329 > select subtract #2.1
    74330 
    74331 277 models selected 
    74332 
    74333 > select add #2.924
    74334 
    74335 278 models selected 
    74336 
    74337 > select add #2.744
    74338 
    74339 279 models selected 
    74340 
    74341 > select add #2.490
    74342 
    74343 280 models selected 
    74344 
    74345 > select add #2.729
    74346 
    74347 281 models selected 
    74348 
    74349 > select add #2.149
    74350 
    74351 282 models selected 
    74352 
    74353 > select add #2.732
    74354 
    74355 283 models selected 
    74356 
    74357 > select add #2.462
    74358 
    74359 284 models selected 
    74360 
    74361 > select add #2.1152
    74362 
    74363 285 models selected 
    74364 
    74365 > select add #2.1301
    74366 
    74367 286 models selected 
    74368 
    74369 > select add #2.371
    74370 
    74371 287 models selected 
    74372 
    74373 > select add #2.370
    74374 
    74375 288 models selected 
    74376 
    74377 > select add #2.931
    74378 
    74379 289 models selected 
    74380 
    74381 > select add #2.880
    74382 
    74383 290 models selected 
    74384 
    74385 > select add #2.663
    74386 
    74387 291 models selected 
    74388 Grouped 291 regions 
    74389 Drag select of 1581, 1558, 150 of 380 triangles, 1559, 230 of 308 triangles,
    74390 1578, 1575, 1572, 1580, 1570, 1577, 1569, 1571, 1579, 1574, 1568, 1556, 41 of
    74391 348 triangles, 1560, 197 of 228 triangles, 1563, 85 of 144 triangles, 1576,
    74392 1567, 1562, 155 of 168 triangles, 1573, 1561, 244 of 308 triangles, 1565,
    74393 1564, 1566 
    74394 Grouped 26 regions 
    74395 
    74396 > select add #2.83
    74397 
    74398 2 models selected 
    74399 
    74400 > select add #2.561
    74401 
    74402 3 models selected 
    74403 
    74404 > select add #2.1033
    74405 
    74406 4 models selected 
    74407 
    74408 > select add #2.132
    74409 
    74410 5 models selected 
    74411 
    74412 > select add #2.259
    74413 
    74414 6 models selected 
    74415 
    74416 > select add #2.680
    74417 
    74418 7 models selected 
    74419 
    74420 > select add #2.195
    74421 
    74422 8 models selected 
    74423 
    74424 > select add #2.305
    74425 
    74426 9 models selected 
    74427 
    74428 > select add #2.775
    74429 
    74430 10 models selected 
    74431 
    74432 > select add #2.297
    74433 
    74434 11 models selected 
    74435 Grouped 11 regions 
    74436 Opened
    74437 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    74438 as #44, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    74439 
    74440 > hide #!2 models
    74441 
    74442 The cached device pixel ratio value was stale on window expose. Please file a
    74443 QTBUG which explains how to reproduce. 
    74444 
    74445 > save /Users/shoichitachiyama/Desktop/tmp/IM.mrc models #44
    74446 
    74447 > save /Users/shoichitachiyama/Desktop/tmp/Segmentation.cxs includeMaps true
    74448 
    74449 > close session
    74450 
    74451 > open /Users/shoichitachiyama/Desktop/tmp/C17_proximal-disk.mrc
    74452 
    74453 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    74454 level 0.0101, step 1, values float32 
    74455 
    74456 > open /Users/shoichitachiyama/Desktop/tmp/1unit_rim.mrc
    74457 
    74458 Opened 1unit_rim.mrc as #2, grid size 250,250,250, pixel 4.3, shown at level
    74459 0.00909, step 1, values float32 
    74460 
    74461 > open /Users/shoichitachiyama/Desktop/tmp/Rod.mrc
    74462 
    74463 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0124,
    74464 step 1, values float32 
    74465 
    74466 > volume #2 level 0.01227
    74467 
    74468 > volume #1 level 0.01376
    74469 
    74470 > volume #3 level 0.01368
    74471 
    74472 > view orient
    74473 
    74474 > turn z 21.17647 models #2 center #3
    74475 
    74476 > volume copy #2
    74477 
    74478 Opened 1unit_rim.mrc copy as #4, grid size 250,250,250, pixel 4.3, shown at
    74479 step 1, values float32 
    74480 
    74481 > volume #2 show
    74482 
    74483 > turn z 21.17647 models #2 center #3
    74484 
    74485 > volume copy #2
    74486 
    74487 Opened 1unit_rim.mrc copy as #5, grid size 250,250,250, pixel 4.3, shown at
    74488 step 1, values float32 
    74489 
    74490 > volume #2 show
    74491 
    74492 > turn z 21.17647 models #2 center #3
    74493 
    74494 > volume copy #2
    74495 
    74496 Opened 1unit_rim.mrc copy as #6, grid size 250,250,250, pixel 4.3, shown at
    74497 step 1, values float32 
    74498 
    74499 > volume #2 show
    74500 
    74501 > turn z 21.17647 models #2 center #3
    74502 
    74503 > volume copy #2
    74504 
    74505 Opened 1unit_rim.mrc copy as #7, grid size 250,250,250, pixel 4.3, shown at
    74506 step 1, values float32 
    74507 
    74508 > volume #2 show
    74509 
    74510 > turn z 21.17647 models #2 center #3
    74511 
    74512 > volume copy #2
    74513 
    74514 Opened 1unit_rim.mrc copy as #8, grid size 250,250,250, pixel 4.3, shown at
    74515 step 1, values float32 
    74516 
    74517 > volume #2 show
    74518 
    74519 > turn z 21.17647 models #2 center #3
    74520 
    74521 > volume copy #2
    74522 
    74523 Opened 1unit_rim.mrc copy as #9, grid size 250,250,250, pixel 4.3, shown at
    74524 step 1, values float32 
    74525 
    74526 > volume #2 show
    74527 
    74528 > turn z 21.17647 models #2 center #3
    74529 
    74530 > volume copy #2
    74531 
    74532 Opened 1unit_rim.mrc copy as #10, grid size 250,250,250, pixel 4.3, shown at
    74533 step 1, values float32 
    74534 
    74535 > volume #2 show
    74536 
    74537 > turn z 21.17647 models #2 center #3
    74538 
    74539 > volume copy #2
    74540 
    74541 Opened 1unit_rim.mrc copy as #11, grid size 250,250,250, pixel 4.3, shown at
    74542 step 1, values float32 
    74543 
    74544 > volume #2 show
    74545 
    74546 > turn z 21.17647 models #2 center #3
    74547 
    74548 > volume copy #2
    74549 
    74550 Opened 1unit_rim.mrc copy as #12, grid size 250,250,250, pixel 4.3, shown at
    74551 step 1, values float32 
    74552 
    74553 > volume #2 show
    74554 
    74555 > turn z 21.17647 models #2 center #3
    74556 
    74557 > volume copy #2
    74558 
    74559 Opened 1unit_rim.mrc copy as #13, grid size 250,250,250, pixel 4.3, shown at
    74560 step 1, values float32 
    74561 
    74562 > volume #2 show
    74563 
    74564 > turn z 21.17647 models #2 center #3
    74565 
    74566 > volume copy #2
    74567 
    74568 Opened 1unit_rim.mrc copy as #14, grid size 250,250,250, pixel 4.3, shown at
    74569 step 1, values float32 
    74570 
    74571 > volume #2 show
    74572 
    74573 > turn z 21.17647 models #2 center #3
    74574 
    74575 > volume copy #2
    74576 
    74577 Opened 1unit_rim.mrc copy as #15, grid size 250,250,250, pixel 4.3, shown at
    74578 step 1, values float32 
    74579 
    74580 > volume #2 show
    74581 
    74582 > turn z 21.17647 models #2 center #3
    74583 
    74584 > volume copy #2
    74585 
    74586 Opened 1unit_rim.mrc copy as #16, grid size 250,250,250, pixel 4.3, shown at
    74587 step 1, values float32 
    74588 
    74589 > volume #2 show
    74590 
    74591 > turn z 21.17647 models #2 center #3
    74592 
    74593 > volume copy #2
    74594 
    74595 Opened 1unit_rim.mrc copy as #17, grid size 250,250,250, pixel 4.3, shown at
    74596 step 1, values float32 
    74597 
    74598 > volume #2 show
    74599 
    74600 > turn z 21.17647 models #2 center #3
    74601 
    74602 > volume copy #2
    74603 
    74604 Opened 1unit_rim.mrc copy as #18, grid size 250,250,250, pixel 4.3, shown at
    74605 step 1, values float32 
    74606 
    74607 > volume #2 show
    74608 
    74609 > turn z 21.17647 models #2 center #3
    74610 
    74611 > volume copy #2
    74612 
    74613 Opened 1unit_rim.mrc copy as #19, grid size 250,250,250, pixel 4.3, shown at
    74614 step 1, values float32 
    74615 
    74616 > volume #2 show
    74617 
    74618 > turn z 21.17647 models #2 center #3
    74619 
    74620 > volume copy #2
    74621 
    74622 Opened 1unit_rim.mrc copy as #20, grid size 250,250,250, pixel 4.3, shown at
    74623 step 1, values float32 
    74624 
    74625 > volume #2 show
    74626 
    74627 > hide #!2 models
    74628 
    74629 > hide #!20 models
    74630 
    74631 > close #4-20
    74632 
    74633 > show #!2 models
    74634 
    74635 > volume gaussian #2 sDev 3
    74636 
    74637 Opened 1unit_rim.mrc gaussian as #4, grid size 250,250,250, pixel 4.3, shown
    74638 at step 1, values float32 
    74639 
    74640 > volume #4 level 0.008185
    74641 
    74642 > turn z 21.17647 models #4 center #3
    74643 
    74644 > volume copy #4
    74645 
    74646 Opened 1unit_rim.mrc gaussian copy as #5, grid size 250,250,250, pixel 4.3,
    74647 shown at step 1, values float32 
    74648 
    74649 > volume #4 show
    74650 
    74651 > turn z 21.17647 models #4 center #3
    74652 
    74653 > volume copy #4
    74654 
    74655 Opened 1unit_rim.mrc gaussian copy as #6, grid size 250,250,250, pixel 4.3,
    74656 shown at step 1, values float32 
    74657 
    74658 > volume #4 show
    74659 
    74660 > turn z 21.17647 models #4 center #3
    74661 
    74662 > volume copy #4
    74663 
    74664 Opened 1unit_rim.mrc gaussian copy as #7, grid size 250,250,250, pixel 4.3,
    74665 shown at step 1, values float32 
    74666 
    74667 > volume #4 show
    74668 
    74669 > turn z 21.17647 models #4 center #3
    74670 
    74671 > volume copy #4
    74672 
    74673 Opened 1unit_rim.mrc gaussian copy as #8, grid size 250,250,250, pixel 4.3,
    74674 shown at step 1, values float32 
    74675 
    74676 > volume #4 show
    74677 
    74678 > turn z 21.17647 models #4 center #3
    74679 
    74680 > volume copy #4
    74681 
    74682 Opened 1unit_rim.mrc gaussian copy as #9, grid size 250,250,250, pixel 4.3,
    74683 shown at step 1, values float32 
    74684 
    74685 > volume #4 show
    74686 
    74687 > turn z 21.17647 models #4 center #3
    74688 
    74689 > volume copy #4
    74690 
    74691 Opened 1unit_rim.mrc gaussian copy as #10, grid size 250,250,250, pixel 4.3,
    74692 shown at step 1, values float32 
    74693 
    74694 > volume #4 show
    74695 
    74696 > turn z 21.17647 models #4 center #3
    74697 
    74698 > volume copy #4
    74699 
    74700 Opened 1unit_rim.mrc gaussian copy as #11, grid size 250,250,250, pixel 4.3,
    74701 shown at step 1, values float32 
    74702 
    74703 > volume #4 show
    74704 
    74705 > turn z 21.17647 models #4 center #3
    74706 
    74707 > volume copy #4
    74708 
    74709 Opened 1unit_rim.mrc gaussian copy as #12, grid size 250,250,250, pixel 4.3,
    74710 shown at step 1, values float32 
    74711 
    74712 > volume #4 show
    74713 
    74714 > turn z 21.17647 models #4 center #3
    74715 
    74716 > volume copy #4
    74717 
    74718 Opened 1unit_rim.mrc gaussian copy as #13, grid size 250,250,250, pixel 4.3,
    74719 shown at step 1, values float32 
    74720 
    74721 > volume #4 show
    74722 
    74723 > turn z 21.17647 models #4 center #3
    74724 
    74725 > volume copy #4
    74726 
    74727 Opened 1unit_rim.mrc gaussian copy as #14, grid size 250,250,250, pixel 4.3,
    74728 shown at step 1, values float32 
    74729 
    74730 > volume #4 show
    74731 
    74732 > turn z 21.17647 models #4 center #3
    74733 
    74734 > volume copy #4
    74735 
    74736 Opened 1unit_rim.mrc gaussian copy as #15, grid size 250,250,250, pixel 4.3,
    74737 shown at step 1, values float32 
    74738 
    74739 > volume #4 show
    74740 
    74741 > turn z 21.17647 models #4 center #3
    74742 
    74743 > volume copy #4
    74744 
    74745 Opened 1unit_rim.mrc gaussian copy as #16, grid size 250,250,250, pixel 4.3,
    74746 shown at step 1, values float32 
    74747 
    74748 > volume #4 show
    74749 
    74750 > turn z 21.17647 models #4 center #3
    74751 
    74752 > volume copy #4
    74753 
    74754 Opened 1unit_rim.mrc gaussian copy as #17, grid size 250,250,250, pixel 4.3,
    74755 shown at step 1, values float32 
    74756 
    74757 > volume #4 show
    74758 
    74759 > turn z 21.17647 models #4 center #3
    74760 
    74761 > volume copy #4
    74762 
    74763 Opened 1unit_rim.mrc gaussian copy as #18, grid size 250,250,250, pixel 4.3,
    74764 shown at step 1, values float32 
    74765 
    74766 > volume #4 show
    74767 
    74768 > turn z 21.17647 models #4 center #3
    74769 
    74770 > volume copy #4
    74771 
    74772 Opened 1unit_rim.mrc gaussian copy as #19, grid size 250,250,250, pixel 4.3,
    74773 shown at step 1, values float32 
    74774 
    74775 > volume #4 show
    74776 
    74777 > turn z 21.17647 models #4 center #3
    74778 
    74779 > volume copy #4
    74780 
    74781 Opened 1unit_rim.mrc gaussian copy as #20, grid size 250,250,250, pixel 4.3,
    74782 shown at step 1, values float32 
    74783 
    74784 > volume #4 show
    74785 
    74786 > hide #!4 models
    74787 
    74788 > open /Users/shoichitachiyama/Desktop/tmp/1unit_PflA.mrc
    74789 
    74790 Opened 1unit_PflA.mrc as #21, grid size 250,250,250, pixel 4.3, shown at level
    74791 0.00904, step 1, values float32 
    74792 
    74793 > turn z 21.17647 models #21 center #3
    74794 
    74795 > volume copy #21
    74796 
    74797 Opened 1unit_PflA.mrc copy as #22, grid size 250,250,250, pixel 4.3, shown at
    74798 step 1, values float32 
    74799 
    74800 > volume #21 show
    74801 
    74802 > turn z 21.17647 models #21 center #3
    74803 
    74804 > volume copy #21
    74805 
    74806 Opened 1unit_PflA.mrc copy as #23, grid size 250,250,250, pixel 4.3, shown at
    74807 step 1, values float32 
    74808 
    74809 > volume #21 show
    74810 
    74811 > turn z 21.17647 models #21 center #3
    74812 
    74813 > volume copy #21
    74814 
    74815 Opened 1unit_PflA.mrc copy as #24, grid size 250,250,250, pixel 4.3, shown at
    74816 step 1, values float32 
    74817 
    74818 > volume #21 show
    74819 
    74820 > turn z 21.17647 models #21 center #3
    74821 
    74822 > volume copy #21
    74823 
    74824 Opened 1unit_PflA.mrc copy as #25, grid size 250,250,250, pixel 4.3, shown at
    74825 step 1, values float32 
    74826 
    74827 > volume #21 show
    74828 
    74829 > turn z 21.17647 models #21 center #3
    74830 
    74831 > volume copy #21
    74832 
    74833 Opened 1unit_PflA.mrc copy as #26, grid size 250,250,250, pixel 4.3, shown at
    74834 step 1, values float32 
    74835 
    74836 > volume #21 show
    74837 
    74838 > turn z 21.17647 models #21 center #3
    74839 
    74840 > volume copy #21
    74841 
    74842 Opened 1unit_PflA.mrc copy as #27, grid size 250,250,250, pixel 4.3, shown at
    74843 step 1, values float32 
    74844 
    74845 > volume #21 show
    74846 
    74847 > turn z 21.17647 models #21 center #3
    74848 
    74849 > volume copy #21
    74850 
    74851 Opened 1unit_PflA.mrc copy as #28, grid size 250,250,250, pixel 4.3, shown at
    74852 step 1, values float32 
    74853 
    74854 > volume #21 show
    74855 
    74856 > turn z 21.17647 models #21 center #3
    74857 
    74858 > volume copy #21
    74859 
    74860 Opened 1unit_PflA.mrc copy as #29, grid size 250,250,250, pixel 4.3, shown at
    74861 step 1, values float32 
    74862 
    74863 > volume #21 show
    74864 
    74865 > turn z 21.17647 models #21 center #3
    74866 
    74867 > volume copy #21
    74868 
    74869 Opened 1unit_PflA.mrc copy as #30, grid size 250,250,250, pixel 4.3, shown at
    74870 step 1, values float32 
    74871 
    74872 > volume #21 show
    74873 
    74874 > turn z 21.17647 models #21 center #3
    74875 
    74876 > volume copy #21
    74877 
    74878 Opened 1unit_PflA.mrc copy as #31, grid size 250,250,250, pixel 4.3, shown at
    74879 step 1, values float32 
    74880 
    74881 > volume #21 show
    74882 
    74883 > turn z 21.17647 models #21 center #3
    74884 
    74885 > volume copy #21
    74886 
    74887 Opened 1unit_PflA.mrc copy as #32, grid size 250,250,250, pixel 4.3, shown at
    74888 step 1, values float32 
    74889 
    74890 > volume #21 show
    74891 
    74892 > turn z 21.17647 models #21 center #3
    74893 
    74894 > volume copy #21
    74895 
    74896 Opened 1unit_PflA.mrc copy as #33, grid size 250,250,250, pixel 4.3, shown at
    74897 step 1, values float32 
    74898 
    74899 > volume #21 show
    74900 
    74901 > turn z 21.17647 models #21 center #3
    74902 
    74903 > volume copy #21
    74904 
    74905 Opened 1unit_PflA.mrc copy as #34, grid size 250,250,250, pixel 4.3, shown at
    74906 step 1, values float32 
    74907 
    74908 > volume #21 show
    74909 
    74910 > turn z 21.17647 models #21 center #3
    74911 
    74912 > volume copy #21
    74913 
    74914 Opened 1unit_PflA.mrc copy as #35, grid size 250,250,250, pixel 4.3, shown at
    74915 step 1, values float32 
    74916 
    74917 > volume #21 show
    74918 
    74919 > turn z 21.17647 models #21 center #3
    74920 
    74921 > volume copy #21
    74922 
    74923 Opened 1unit_PflA.mrc copy as #36, grid size 250,250,250, pixel 4.3, shown at
    74924 step 1, values float32 
    74925 
    74926 > volume #21 show
    74927 
    74928 > turn z 21.17647 models #21 center #3
    74929 
    74930 > volume copy #21
    74931 
    74932 Opened 1unit_PflA.mrc copy as #37, grid size 250,250,250, pixel 4.3, shown at
    74933 step 1, values float32 
    74934 
    74935 > volume #21 show
    74936 
    74937 > turn z 21.17647 models #21 center #3
    74938 
    74939 > volume copy #21
    74940 
    74941 Opened 1unit_PflA.mrc copy as #38, grid size 250,250,250, pixel 4.3, shown at
    74942 step 1, values float32 
    74943 
    74944 > volume #21 show
    74945 
    74946 > hide #!21 models
    74947 
    74948 > open /Users/shoichitachiyama/Desktop/tmp/FliL_out.mrc
    74949 
    74950 Opened FliL_out.mrc as #39, grid size 250,250,250, pixel 4.3, shown at level
    74951 0.00908, step 1, values float32 
    74952 
    74953 > hide #!38 models
    74954 
    74955 > hide #!37 models
    74956 
    74957 > hide #!36 models
    74958 
    74959 > hide #!35 models
    74960 
    74961 > hide #!34 models
    74962 
    74963 > hide #!33 models
    74964 
    74965 > hide #!31 models
    74966 
    74967 > hide #!32 models
    74968 
    74969 > hide #!30 models
    74970 
    74971 > hide #!29 models
    74972 
    74973 > hide #!27 models
    74974 
    74975 > hide #!28 models
    74976 
    74977 > hide #!26 models
    74978 
    74979 > hide #!25 models
    74980 
    74981 > hide #!24 models
    74982 
    74983 > hide #!23 models
    74984 
    74985 > hide #!22 models
    74986 
    74987 > hide #!20 models
    74988 
    74989 > hide #!18 models
    74990 
    74991 > hide #!19 models
    74992 
    74993 > hide #!17 models
    74994 
    74995 > hide #!16 models
    74996 
    74997 > hide #!15 models
    74998 
    74999 > hide #!14 models
    75000 
    75001 > hide #!13 models
    75002 
    75003 > hide #!12 models
    75004 
    75005 > hide #!11 models
    75006 
    75007 > hide #!10 models
    75008 
    75009 > hide #!9 models
    75010 
    75011 > hide #!8 models
    75012 
    75013 > hide #!7 models
    75014 
    75015 > hide #!6 models
    75016 
    75017 > hide #!5 models
    75018 
    75019 > hide #!1 models
    75020 
    75021 > show #!1 models
    75022 
    75023 > hide #!1 models
    75024 
    75025 > show #!1 models
    75026 
    75027 > volume gaussian #39 sDev 2
    75028 
    75029 Opened FliL_out.mrc gaussian as #40, grid size 250,250,250, pixel 4.3, shown
    75030 at step 1, values float32 
    75031 
    75032 > turn z 21.17647 models #40 center #3
    75033 
    75034 > volume copy #40
    75035 
    75036 Opened FliL_out.mrc gaussian copy as #41, grid size 250,250,250, pixel 4.3,
    75037 shown at step 1, values float32 
    75038 
    75039 > volume #40 show
    75040 
    75041 > turn z 21.17647 models #40 center #3
    75042 
    75043 > volume copy #40
    75044 
    75045 Opened FliL_out.mrc gaussian copy as #42, grid size 250,250,250, pixel 4.3,
    75046 shown at step 1, values float32 
    75047 
    75048 > volume #40 show
    75049 
    75050 > turn z 21.17647 models #40 center #3
    75051 
    75052 > volume copy #40
    75053 
    75054 Opened FliL_out.mrc gaussian copy as #43, grid size 250,250,250, pixel 4.3,
    75055 shown at step 1, values float32 
    75056 
    75057 > volume #40 show
    75058 
    75059 > turn z 21.17647 models #40 center #3
    75060 
    75061 > volume copy #40
    75062 
    75063 Opened FliL_out.mrc gaussian copy as #44, grid size 250,250,250, pixel 4.3,
    75064 shown at step 1, values float32 
    75065 
    75066 > volume #40 show
    75067 
    75068 > turn z 21.17647 models #40 center #3
    75069 
    75070 > volume copy #40
    75071 
    75072 Opened FliL_out.mrc gaussian copy as #45, grid size 250,250,250, pixel 4.3,
    75073 shown at step 1, values float32 
    75074 
    75075 > volume #40 show
    75076 
    75077 > turn z 21.17647 models #40 center #3
    75078 
    75079 > volume copy #40
    75080 
    75081 Opened FliL_out.mrc gaussian copy as #46, grid size 250,250,250, pixel 4.3,
    75082 shown at step 1, values float32 
    75083 
    75084 > volume #40 show
    75085 
    75086 > turn z 21.17647 models #40 center #3
    75087 
    75088 > volume copy #40
    75089 
    75090 Opened FliL_out.mrc gaussian copy as #47, grid size 250,250,250, pixel 4.3,
    75091 shown at step 1, values float32 
    75092 
    75093 > volume #40 show
    75094 
    75095 > turn z 21.17647 models #40 center #3
    75096 
    75097 > volume copy #40
    75098 
    75099 Opened FliL_out.mrc gaussian copy as #48, grid size 250,250,250, pixel 4.3,
    75100 shown at step 1, values float32 
    75101 
    75102 > volume #40 show
    75103 
    75104 > turn z 21.17647 models #40 center #3
    75105 
    75106 > volume copy #40
    75107 
    75108 Opened FliL_out.mrc gaussian copy as #49, grid size 250,250,250, pixel 4.3,
    75109 shown at step 1, values float32 
    75110 
    75111 > volume #40 show
    75112 
    75113 > turn z 21.17647 models #40 center #3
    75114 
    75115 > volume copy #40
    75116 
    75117 Opened FliL_out.mrc gaussian copy as #50, grid size 250,250,250, pixel 4.3,
    75118 shown at step 1, values float32 
    75119 
    75120 > volume #40 show
    75121 
    75122 > turn z 21.17647 models #40 center #3
    75123 
    75124 > volume copy #40
    75125 
    75126 Opened FliL_out.mrc gaussian copy as #51, grid size 250,250,250, pixel 4.3,
    75127 shown at step 1, values float32 
    75128 
    75129 > volume #40 show
    75130 
    75131 > turn z 21.17647 models #40 center #3
    75132 
    75133 > volume copy #40
    75134 
    75135 Opened FliL_out.mrc gaussian copy as #52, grid size 250,250,250, pixel 4.3,
    75136 shown at step 1, values float32 
    75137 
    75138 > volume #40 show
    75139 
    75140 > turn z 21.17647 models #40 center #3
    75141 
    75142 > volume copy #40
    75143 
    75144 Opened FliL_out.mrc gaussian copy as #53, grid size 250,250,250, pixel 4.3,
    75145 shown at step 1, values float32 
    75146 
    75147 > volume #40 show
    75148 
    75149 > turn z 21.17647 models #40 center #3
    75150 
    75151 > volume copy #40
    75152 
    75153 Opened FliL_out.mrc gaussian copy as #54, grid size 250,250,250, pixel 4.3,
    75154 shown at step 1, values float32 
    75155 
    75156 > volume #40 show
    75157 
    75158 > turn z 21.17647 models #40 center #3
    75159 
    75160 > volume copy #40
    75161 
    75162 Opened FliL_out.mrc gaussian copy as #55, grid size 250,250,250, pixel 4.3,
    75163 shown at step 1, values float32 
    75164 
    75165 > volume #40 show
    75166 
    75167 > turn z 21.17647 models #40 center #3
    75168 
    75169 > volume copy #40
    75170 
    75171 Opened FliL_out.mrc gaussian copy as #56, grid size 250,250,250, pixel 4.3,
    75172 shown at step 1, values float32 
    75173 
    75174 > volume #40 show
    75175 
    75176 > turn z 21.17647 models #40 center #3
    75177 
    75178 > volume copy #40
    75179 
    75180 Opened FliL_out.mrc gaussian copy as #57, grid size 250,250,250, pixel 4.3,
    75181 shown at step 1, values float32 
    75182 
    75183 > volume #40 show
    75184 
    75185 > open /Users/shoichitachiyama/Desktop/tmp/FliL.mrc
    75186 
    75187 Opened FliL.mrc as #58, grid size 250,250,250, pixel 4.3, shown at level
    75188 0.00921, step 1, values float32 
    75189 
    75190 > close #40-58
    75191 
    75192 > hide #!1 models
    75193 
    75194 > show #!39 models
    75195 
    75196 > ui tool show "Map Eraser"
    75197 
    75198 Can only have one displayed volume when erasing 
    75199 
    75200 [Repeated 1 time(s)]
    75201 
    75202 > hide #!3 models
    75203 
    75204 > volume erase #39 center 850.21,719.14,614.23 radius 179.9
    75205 
    75206 Opened FliL_out.mrc copy as #41, grid size 250,250,250, pixel 4.3, shown at
    75207 step 1, values float32 
    75208 
    75209 > close #40
    75210 
    75211 > show #!3 models
    75212 
    75213 > close #39
    75214 
    75215 > view orient
    75216 
    75217 > turn z 21.17647 models #41 center #3
    75218 
    75219 > volume copy #41
    75220 
    75221 Opened FliL_out.mrc copy as #39, grid size 250,250,250, pixel 4.3, shown at
    75222 step 1, values float32 
    75223 
    75224 > volume #41 show
    75225 
    75226 > turn z 21.17647 models #41 center #3
    75227 
    75228 > volume copy #41
    75229 
    75230 Opened FliL_out.mrc copy as #40, grid size 250,250,250, pixel 4.3, shown at
    75231 step 1, values float32 
    75232 
    75233 > volume #41 show
    75234 
    75235 > turn z 21.17647 models #41 center #3
    75236 
    75237 > volume copy #41
    75238 
    75239 Opened FliL_out.mrc copy as #42, grid size 250,250,250, pixel 4.3, shown at
    75240 step 1, values float32 
    75241 
    75242 > volume #41 show
    75243 
    75244 > turn z 21.17647 models #41 center #3
    75245 
    75246 > volume copy #41
    75247 
    75248 Opened FliL_out.mrc copy as #43, grid size 250,250,250, pixel 4.3, shown at
    75249 step 1, values float32 
    75250 
    75251 > volume #41 show
    75252 
    75253 > turn z 21.17647 models #41 center #3
    75254 
    75255 > volume copy #41
    75256 
    75257 Opened FliL_out.mrc copy as #44, grid size 250,250,250, pixel 4.3, shown at
    75258 step 1, values float32 
    75259 
    75260 > volume #41 show
    75261 
    75262 > turn z 21.17647 models #41 center #3
    75263 
    75264 > volume copy #41
    75265 
    75266 Opened FliL_out.mrc copy as #45, grid size 250,250,250, pixel 4.3, shown at
    75267 step 1, values float32 
    75268 
    75269 > volume #41 show
    75270 
    75271 > turn z 21.17647 models #41 center #3
    75272 
    75273 > volume copy #41
    75274 
    75275 Opened FliL_out.mrc copy as #46, grid size 250,250,250, pixel 4.3, shown at
    75276 step 1, values float32 
    75277 
    75278 > volume #41 show
    75279 
    75280 > turn z 21.17647 models #41 center #3
    75281 
    75282 > volume copy #41
    75283 
    75284 Opened FliL_out.mrc copy as #47, grid size 250,250,250, pixel 4.3, shown at
    75285 step 1, values float32 
    75286 
    75287 > volume #41 show
    75288 
    75289 > turn z 21.17647 models #41 center #3
    75290 
    75291 > volume copy #41
    75292 
    75293 Opened FliL_out.mrc copy as #48, grid size 250,250,250, pixel 4.3, shown at
    75294 step 1, values float32 
    75295 
    75296 > volume #41 show
    75297 
    75298 > turn z 21.17647 models #41 center #3
    75299 
    75300 > volume copy #41
    75301 
    75302 Opened FliL_out.mrc copy as #49, grid size 250,250,250, pixel 4.3, shown at
    75303 step 1, values float32 
    75304 
    75305 > volume #41 show
    75306 
    75307 > turn z 21.17647 models #41 center #3
    75308 
    75309 > volume copy #41
    75310 
    75311 Opened FliL_out.mrc copy as #50, grid size 250,250,250, pixel 4.3, shown at
    75312 step 1, values float32 
    75313 
    75314 > volume #41 show
    75315 
    75316 > turn z 21.17647 models #41 center #3
    75317 
    75318 > volume copy #41
    75319 
    75320 Opened FliL_out.mrc copy as #51, grid size 250,250,250, pixel 4.3, shown at
    75321 step 1, values float32 
    75322 
    75323 > volume #41 show
    75324 
    75325 > turn z 21.17647 models #41 center #3
    75326 
    75327 > volume copy #41
    75328 
    75329 Opened FliL_out.mrc copy as #52, grid size 250,250,250, pixel 4.3, shown at
    75330 step 1, values float32 
    75331 
    75332 > volume #41 show
    75333 
    75334 > turn z 21.17647 models #41 center #3
    75335 
    75336 > volume copy #41
    75337 
    75338 Opened FliL_out.mrc copy as #53, grid size 250,250,250, pixel 4.3, shown at
    75339 step 1, values float32 
    75340 
    75341 > volume #41 show
    75342 
    75343 > turn z 21.17647 models #41 center #3
    75344 
    75345 > volume copy #41
    75346 
    75347 Opened FliL_out.mrc copy as #54, grid size 250,250,250, pixel 4.3, shown at
    75348 step 1, values float32 
    75349 
    75350 > volume #41 show
    75351 
    75352 > turn z 21.17647 models #41 center #3
    75353 
    75354 > volume copy #41
    75355 
    75356 Opened FliL_out.mrc copy as #55, grid size 250,250,250, pixel 4.3, shown at
    75357 step 1, values float32 
    75358 
    75359 > volume #41 show
    75360 
    75361 > turn z 21.17647 models #41 center #3
    75362 
    75363 > volume copy #41
    75364 
    75365 Opened FliL_out.mrc copy as #56, grid size 250,250,250, pixel 4.3, shown at
    75366 step 1, values float32 
    75367 
    75368 > volume #41 show
    75369 
    75370 > open /Users/shoichitachiyama/Desktop/tmp/FliL.mrc
    75371 
    75372 Opened FliL.mrc as #57, grid size 250,250,250, pixel 4.3, shown at level
    75373 0.00921, step 1, values float32 
    75374 
    75375 > view orient
    75376 
    75377 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    75378 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    75379 > review/Updated_Figures/07252025/Original-map-deposit/Seg/Cage-Mono-Good.mrc"
    75380 
    75381 Opened Cage-Mono-Good.mrc as #58, grid size 250,250,250, pixel 4.3, shown at
    75382 level 0.00905, step 1, values float32 
    75383 
    75384 > view orient
    75385 
    75386 > turn z 21.17647 models #58 center #3
    75387 
    75388 > volume copy #58
    75389 
    75390 Opened Cage-Mono-Good.mrc copy as #59, grid size 250,250,250, pixel 4.3, shown
    75391 at step 1, values float32 
    75392 
    75393 > volume #58 show
    75394 
    75395 > turn z 21.17647 models #58 center #3
    75396 
    75397 > volume copy #58
    75398 
    75399 Opened Cage-Mono-Good.mrc copy as #60, grid size 250,250,250, pixel 4.3, shown
    75400 at step 1, values float32 
    75401 
    75402 > volume #58 show
    75403 
    75404 > turn z 21.17647 models #58 center #3
    75405 
    75406 > volume copy #58
    75407 
    75408 Opened Cage-Mono-Good.mrc copy as #61, grid size 250,250,250, pixel 4.3, shown
    75409 at step 1, values float32 
    75410 
    75411 > volume #58 show
    75412 
    75413 > turn z 21.17647 models #58 center #3
    75414 
    75415 > volume copy #58
    75416 
    75417 Opened Cage-Mono-Good.mrc copy as #62, grid size 250,250,250, pixel 4.3, shown
    75418 at step 1, values float32 
    75419 
    75420 > volume #58 show
    75421 
    75422 > turn z 21.17647 models #58 center #3
    75423 
    75424 > volume copy #58
    75425 
    75426 Opened Cage-Mono-Good.mrc copy as #63, grid size 250,250,250, pixel 4.3, shown
    75427 at step 1, values float32 
    75428 
    75429 > volume #58 show
    75430 
    75431 > turn z 21.17647 models #58 center #3
    75432 
    75433 > volume copy #58
    75434 
    75435 Opened Cage-Mono-Good.mrc copy as #64, grid size 250,250,250, pixel 4.3, shown
    75436 at step 1, values float32 
    75437 
    75438 > volume #58 show
    75439 
    75440 > turn z 21.17647 models #58 center #3
    75441 
    75442 > volume copy #58
    75443 
    75444 Opened Cage-Mono-Good.mrc copy as #65, grid size 250,250,250, pixel 4.3, shown
    75445 at step 1, values float32 
    75446 
    75447 > volume #58 show
    75448 
    75449 > turn z 21.17647 models #58 center #3
    75450 
    75451 > volume copy #58
    75452 
    75453 Opened Cage-Mono-Good.mrc copy as #66, grid size 250,250,250, pixel 4.3, shown
    75454 at step 1, values float32 
    75455 
    75456 > volume #58 show
    75457 
    75458 > turn z 21.17647 models #58 center #3
    75459 
    75460 > volume copy #58
    75461 
    75462 Opened Cage-Mono-Good.mrc copy as #67, grid size 250,250,250, pixel 4.3, shown
    75463 at step 1, values float32 
    75464 
    75465 > volume #58 show
    75466 
    75467 > turn z 21.17647 models #58 center #3
    75468 
    75469 > volume copy #58
    75470 
    75471 Opened Cage-Mono-Good.mrc copy as #68, grid size 250,250,250, pixel 4.3, shown
    75472 at step 1, values float32 
    75473 
    75474 > volume #58 show
    75475 
    75476 > turn z 21.17647 models #58 center #3
    75477 
    75478 > volume copy #58
    75479 
    75480 Opened Cage-Mono-Good.mrc copy as #69, grid size 250,250,250, pixel 4.3, shown
    75481 at step 1, values float32 
    75482 
    75483 > volume #58 show
    75484 
    75485 > turn z 21.17647 models #58 center #3
    75486 
    75487 > volume copy #58
    75488 
    75489 Opened Cage-Mono-Good.mrc copy as #70, grid size 250,250,250, pixel 4.3, shown
    75490 at step 1, values float32 
    75491 
    75492 > volume #58 show
    75493 
    75494 > turn z 21.17647 models #58 center #3
    75495 
    75496 > volume copy #58
    75497 
    75498 Opened Cage-Mono-Good.mrc copy as #71, grid size 250,250,250, pixel 4.3, shown
    75499 at step 1, values float32 
    75500 
    75501 > volume #58 show
    75502 
    75503 > turn z 21.17647 models #58 center #3
    75504 
    75505 > volume copy #58
    75506 
    75507 Opened Cage-Mono-Good.mrc copy as #72, grid size 250,250,250, pixel 4.3, shown
    75508 at step 1, values float32 
    75509 
    75510 > volume #58 show
    75511 
    75512 > turn z 21.17647 models #58 center #3
    75513 
    75514 > volume copy #58
    75515 
    75516 Opened Cage-Mono-Good.mrc copy as #73, grid size 250,250,250, pixel 4.3, shown
    75517 at step 1, values float32 
    75518 
    75519 > volume #58 show
    75520 
    75521 > turn z 21.17647 models #58 center #3
    75522 
    75523 > volume copy #58
    75524 
    75525 Opened Cage-Mono-Good.mrc copy as #74, grid size 250,250,250, pixel 4.3, shown
    75526 at step 1, values float32 
    75527 
    75528 > volume #58 show
    75529 
    75530 > turn z 21.17647 models #58 center #3
    75531 
    75532 > volume copy #58
    75533 
    75534 Opened Cage-Mono-Good.mrc copy as #75, grid size 250,250,250, pixel 4.3, shown
    75535 at step 1, values float32 
    75536 
    75537 > volume #58 show
    75538 
    75539 > surface dust #1-58 size 30
    75540 
    75541 > volume #75 level 0.01374
    75542 
    75543 > volume #1-75 level 0.01374
    75544 
    75545 > view orient
    75546 
    75547 > open /Users/shoichitachiyama/Desktop/tmp/MS-ring.mrc
    75548 
    75549 Opened MS-ring.mrc as #76, grid size 250,250,250, pixel 4.3, shown at level
    75550 0.00931, step 1, values float32 
    75551 
    75552 > open /Users/shoichitachiyama/Desktop/tmp/E-ring.mrc
    75553 
    75554 Opened E-ring.mrc as #77, grid size 250,250,250, pixel 4.3, shown at level
    75555 0.00927, step 1, values float32 
    75556 
    75557 > volume gaussian #77 sDev 2
    75558 
    75559 Opened E-ring.mrc gaussian as #78, grid size 250,250,250, pixel 4.3, shown at
    75560 step 1, values float32 
    75561 
    75562 > close #77
    75563 
    75564 > volume #1-77 level 0.01374
    75565 
    75566 > volume #1-78 level 0.01374
    75567 
    75568 > show #!4 models
    75569 
    75570 > show #!5 models
    75571 
    75572 > show #!6 models
    75573 
    75574 > show #!7 models
    75575 
    75576 > show #!8 models
    75577 
    75578 > show #!9 models
    75579 
    75580 > show #!10 models
    75581 
    75582 > show #!11 models
    75583 
    75584 > show #!12 models
    75585 
    75586 > show #!13 models
    75587 
    75588 > show #!14 models
    75589 
    75590 > show #!15 models
    75591 
    75592 > show #!16 models
    75593 
    75594 > show #!17 models
    75595 
    75596 > show #!18 models
    75597 
    75598 > show #!19 models
    75599 
    75600 > show #!20 models
    75601 
    75602 > show #!2 models
    75603 
    75604 > hide #!2 models
    75605 
    75606 > hide #!20 models
    75607 
    75608 > show #!20 models
    75609 
    75610 > hide #!20 models
    75611 
    75612 > show #!20 models
    75613 
    75614 > show #!20
    75615 
    75616 > hide #!20 models
    75617 
    75618 > show #!20 models
    75619 
    75620 > hide #20.1 models
    75621 
    75622 > show #20.1 models
    75623 
    75624 > hide #!4 models
    75625 
    75626 > show #!4 models
    75627 
    75628 > hide #4.1 models
    75629 
    75630 > show #4.1 models
    75631 
    75632 > hide #!4 models
    75633 
    75634 > show #!1 models
    75635 
    75636 > hide #!1 models
    75637 
    75638 > show #!4 models
    75639 
    75640 > show #!2 models
    75641 
    75642 > hide #!2 models
    75643 
    75644 > close #4
    75645 
    75646 > volume gaussian #2 sDev 3
    75647 
    75648 Opened 1unit_rim.mrc gaussian as #4, grid size 250,250,250, pixel 4.3, shown
    75649 at step 1, values float32 
    75650 
    75651 > volume #1-78 level 0.01374
    75652 
    75653 > show #!21 models
    75654 
    75655 > show #!22 models
    75656 
    75657 > show #!23 models
    75658 
    75659 > show #!24 models
    75660 
    75661 > show #!25 models
    75662 
    75663 > show #!26 models
    75664 
    75665 > show #!27 models
    75666 
    75667 > show #!28 models
    75668 
    75669 > show #!38 models
    75670 
    75671 > show #!37 models
    75672 
    75673 > show #!36 models
    75674 
    75675 > show #!35 models
    75676 
    75677 > show #!34 models
    75678 
    75679 > show #!33 models
    75680 
    75681 > show #!32 models
    75682 
    75683 > show #!31 models
    75684 
    75685 > show #!30 models
    75686 
    75687 > show #!29 models
    75688 
    75689 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    75690 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    75691 > review/Updated_Figures/07252025/Original-map-deposit/Seg/Basal_disk.mrc"
    75692 
    75693 Opened Basal_disk.mrc as #77, grid size 250,250,250, pixel 4.3, shown at level
    75694 0.128, step 1, values float32 
    75695 
    75696 > volume #77 level 0.0137
    75697 
    75698 > volume gaussian #77 sDev 3
    75699 
    75700 Opened Basal_disk.mrc gaussian as #79, grid size 250,250,250, pixel 4.3, shown
    75701 at step 1, values float32 
    75702 
    75703 > close #77
    75704 
    75705 > volume #79 level 0.0137
    75706 
    75707 > volume #79 level 0.02553
    75708 
    75709 > volume #79 level 0.05953
    75710 
    75711 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    75712 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    75713 > review/Updated_Figures/07252025/Original-map-deposit/Seg/C-ring-stators.mrc"
    75714 
    75715 Opened C-ring-stators.mrc as #77, grid size 250,250,250, pixel 4.3, shown at
    75716 level 0.0725, step 1, values float32 
    75717 
    75718 > volume #77 level 0.0595
    75719 
    75720 > volume #77 level 0.0137
    75721 
    75722 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    75723 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    75724 > review/Updated_Figures/07252025/Original-map-deposit/Seg/C-Vring.mrc"
    75725 
    75726 Opened C-Vring.mrc as #80, grid size 250,250,250, pixel 4.3, shown at level
    75727 0.00961, step 1, values float32 
    75728 
    75729 > volume #80 level 0.0137
    75730 
    75731 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    75732 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    75733 > review/Updated_Figures/07252025/Original-map-deposit/Seg/Exp_ATP.mrc"
    75734 
    75735 Opened Exp_ATP.mrc as #81, grid size 250,250,250, pixel 4.3, shown at level
    75736 0.00943, step 1, values float32 
    75737 
    75738 > volume #81 level 0.0137
    75739 
    75740 > volume gaussian #81 sDev 4
    75741 
    75742 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    75743 step 1, values float32 
    75744 
    75745 > close #81
    75746 
    75747 > volume #82 level 0.0137
    75748 
    75749 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    75750 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    75751 > review/Updated_Figures/07252025/Original-map-deposit/Seg/LP-ring.mrc"
    75752 
    75753 Opened LP-ring.mrc as #81, grid size 250,250,250, pixel 4.3, shown at level
    75754 0.00947, step 1, values float32 
    75755 
    75756 > volume gaussian #81 sDev 3
    75757 
    75758 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    75759 step 1, values float32 
    75760 
    75761 > volume #83 level 0.0137
    75762 
    75763 > close #81
    75764 
    75765 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    75766 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    75767 > review/Updated_Figures/07252025/Original-map-deposit/Seg/MotB.mrc"
    75768 
    75769 Opened MotB.mrc as #81, grid size 250,250,250, pixel 4.3, shown at level
    75770 0.00929, step 1, values float32 
    75771 
    75772 > volume #81 level 0.0137
    75773 
    75774 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    75775 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    75776 > review/Updated_Figures/07252025/Original-map-deposit/Seg/PflC.mrc"
    75777 
    75778 Opened PflC.mrc as #84, grid size 250,250,250, pixel 4.3, shown at level
    75779 0.0179, step 1, values float32 
    75780 
    75781 > volume gaussian #84 sDev 3
    75782 
    75783 Opened PflC.mrc gaussian as #85, grid size 250,250,250, pixel 4.3, shown at
    75784 step 1, values float32 
    75785 
    75786 > volume #85 level 0.0137
    75787 
    75788 > volume #85 level 0.03146
    75789 
    75790 > volume #85 level 0.06343
    75791 
    75792 > volume #85 level 0.04389
    75793 
    75794 > surface dust #85\ size 50
    75795 
    75796 Missing or invalid "surfaces" argument: only initial part "#85" of atom
    75797 specifier valid 
    75798 
    75799 > surface dust #85 size 50
    75800 
    75801 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    75802 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    75803 > review/Updated_Figures/07252025/Original-map-deposit/Seg/PflD.mrc"
    75804 
    75805 Opened PflD.mrc as #86, grid size 250,250,250, pixel 4.3, shown at level
    75806 0.00914, step 1, values float32 
    75807 
    75808 > volume #86 level 0.0137
    75809 
    75810 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    75811 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    75812 > review/Updated_Figures/07252025/Original-map-deposit/Seg/PilM.mrc"
    75813 
    75814 Opened PilM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level
    75815 0.00952, step 1, values float32 
    75816 
    75817 > close #84
    75818 
    75819 > volume gaussian #85 sDev 3
    75820 
    75821 Opened PflC.mrc gaussian as #84, grid size 250,250,250, pixel 4.3, shown at
    75822 step 1, values float32 
    75823 
    75824 > show #!85 models
    75825 
    75826 > hide #!84 models
    75827 
    75828 > close #84
    75829 
    75830 > volume gaussian #87 sDev 3
    75831 
    75832 Opened PilM.mrc gaussian as #84, grid size 250,250,250, pixel 4.3, shown at
    75833 step 1, values float32 
    75834 
    75835 > close #87
    75836 
    75837 > volume #84 level 0.0137
    75838 
    75839 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    75840 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    75841 > review/Updated_Figures/07252025/Original-map-deposit/Seg/OM.mrc"
    75842 
    75843 Opened OM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.132,
    75844 step 1, values float32 
    75845 
    75846 > volume #87 level 0.02428
    75847 
    75848 > volume gaussian #87 sDev 7
    75849 
    75850 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at step
    75851 1, values float32 
    75852 
    75853 > volume #88 level 0.02703
    75854 
    75855 > close #87
    75856 
    75857 > open /Users/shoichitachiyama/Desktop/tmp/IM.mrc
    75858 
    75859 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    75860 step 1, values float32 
    75861 
    75862 > volume gaussian #87 sDev 9
    75863 
    75864 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at step
    75865 1, values float32 
    75866 
    75867 > volume #89 level 0.01114
    75868 
    75869 > ui tool show "Side View"
    75870 
    75871 > view orient
    75872 
    75873 > hide #!85 models
    75874 
    75875 > lighting soft
    75876 
    75877 [Repeated 1 time(s)]
    75878 
    75879 > lighting flat
    75880 
    75881 [Repeated 1 time(s)]
    75882 
    75883 > lighting soft
    75884 
    75885 > graphics silhouettes false
    75886 
    75887 > color #21 #eba384ff models
    75888 
    75889 > color #21 #eb9275ff models
    75890 
    75891 > hide #!21 models
    75892 
    75893 > show #!21 models
    75894 
    75895 > hide #!22 models
    75896 
    75897 > show #!22 models
    75898 
    75899 > color #22 #eb3718ff models
    75900 
    75901 > color #22 #eb3d1cff models
    75902 
    75903 > color #22 #eb1334ff models
    75904 
    75905 > color #22-38 #eb1334ff models
    75906 
    75907 > hide #!23 models
    75908 
    75909 > show #!23 models
    75910 
    75911 > hide #!23 models
    75912 
    75913 > show #!23 models
    75914 
    75915 > color #78 #ffc6ffff models
    75916 
    75917 > color #78 #ffe0fdff models
    75918 
    75919 > color #78 #ffd2fbff models
    75920 
    75921 > color #78 #fdd8ffff models
    75922 
    75923 > color #76 #3eff23ff models
    75924 
    75925 > color #76 #1d7710ff models
    75926 
    75927 > color #3 #929292ff models
    75928 
    75929 > color #3 #919191ff models
    75930 
    75931 > color #3 #797979ff models
    75932 
    75933 > color #81 #ff8e21ff models
    75934 
    75935 > color #81 #ff871cff models
    75936 
    75937 > color #81 #ba6315ff models
    75938 
    75939 > volume #89 level 0.006427
    75940 
    75941 > color #86 #2cc9ebff models
    75942 
    75943 > color #58 #24aaffff models
    75944 
    75945 > color #58 #35bdffff models
    75946 
    75947 > color #59 #4496ffff models
    75948 
    75949 > color #59 #488fffff models
    75950 
    75951 > color #59 #2da3ffff models
    75952 
    75953 > color #59 #2698ffff models
    75954 
    75955 > color #59 #2c93ffff models
    75956 
    75957 > color #59-75 #2c93ffff models
    75958 
    75959 > color #4 #ff41fcff models
    75960 
    75961 > color #4 #f046ffff models
    75962 
    75963 > color #4 #fe3dffff models
    75964 
    75965 > color #4-20 #fe3dffff models
    75966 
    75967 > hide #!81 models
    75968 
    75969 > view orient
    75970 
    75971 > color #89 #ffeffbff models
    75972 
    75973 > color #89 #a5ffadff models
    75974 
    75975 > color #89 #466c49ff models
    75976 
    75977 > color #89 #3a5a3dff models
    75978 
    75979 > color #89 #365338ff models
    75980 
    75981 > view orient
    75982 
    75983 > turn x 90
    75984 
    75985 [Repeated 2 time(s)]
    75986 
    75987 > color #75 #2c93fffc models
    75988 
    75989 > color #75 #2c93ffff models
    75990 
    75991 > color #84 #2c93ffff models
    75992 
    75993 > show #!85 models
    75994 
    75995 > color #85 #abe2aeff models
    75996 
    75997 > volume #71 level 0.01374
    75998 
    75999 > volume #74 level 0.007489
    76000 
    76001 > volume #74 level 0.002801
    76002 
    76003 > volume #74 level 0.0137
    76004 
    76005 > volume #89 level 0.01665
    76006 
    76007 > color #44 #fff7b8ff models
    76008 
    76009 > color #44 #ffe68bff models
    76010 
    76011 > color #44 #ffe776ff models
    76012 
    76013 > color #44 #ffe877ff models
    76014 
    76015 > color #44 #e9d46dff models
    76016 
    76017 > color #39-56 #e9d46dff models
    76018 
    76019 > color #77 #919191ff models
    76020 
    76021 > color #77 #797979ff models
    76022 
    76023 > color #82 #797979ff models
    76024 
    76025 > color #80 #797979ff models
    76026 
    76027 > color #88 #4f8f00ff models
    76028 
    76029 > color #88 #008f00ff models
    76030 
    76031 > color #88 #009051ff models
    76032 
    76033 > color #88 #559050ff models
    76034 
    76035 > color #88 #477743ff models
    76036 
    76037 > color #88 #2e4e2cff models
    76038 
    76039 > color #89 #2e4e2cff models
    76040 
    76041 > view orient
    76042 
    76043 > turn x 90
    76044 
    76045 [Repeated 2 time(s)]
    76046 
    76047 > turn y 90
    76048 
    76049 [Repeated 5 time(s)]
    76050 
    76051 > turn y -10
    76052 
    76053 [Repeated 1 time(s)]
    76054 
    76055 > turn x 90
    76056 
    76057 > hide #!85 models
    76058 
    76059 > hide #!86 models
    76060 
    76061 > show #!86 models
    76062 
    76063 > show #!85 models
    76064 
    76065 > hide #!85 models
    76066 
    76067 > show #!81 models
    76068 
    76069 > color #79 #797979ff models
    76070 
    76071 > hide #!79 models
    76072 
    76073 > color #83 #d4fb79ff models
    76074 
    76075 > color #83 #b5fb6cff models
    76076 
    76077 > color #83 #d2fbbfff models
    76078 
    76079 > color #83 #d2fbbbff models
    76080 
    76081 > color #83 #b4fba8ff models
    76082 
    76083 > color #83 #c2fbafff models
    76084 
    76085 > color #83 #c1fbafff models
    76086 
    76087 > hide #!83 models
    76088 
    76089 > volume #78 level 0.0273
    76090 
    76091 > volume #78 level 0.0137
    76092 
    76093 > volume #76 level 0.01374
    76094 
    76095 > volume #76 level 0.006688
    76096 
    76097 > volume #76 level 0.0137
    76098 
    76099 > volume #78 level 0.2392
    76100 
    76101 > volume #78 level 0.1137
    76102 
    76103 > save /Users/shoichitachiyama/Desktop/tmp/Figure-1.cxs includeMaps true
    76104 
    76105 ——— End of log from Fri Jul 25 22:07:01 2025 ———
    76106 
    76107 opened ChimeraX session 
    76108 
    76109 > ui tool show "Side View"
    76110 
    76111 > save /Users/shoichi/Desktop/For_Composition-maps/Global_Segment_Fig1.cxs
    76112 > includeMaps true
    76113 
    76114 ——— End of log from Tue Sep 9 09:30:49 2025 ———
    76115 
    76116 opened ChimeraX session 
    76117 
    76118 > hide #!3 models
    76119 
    76120 > show #!3 models
    76121 
    76122 > hide #!3 models
    76123 
    76124 > hide #!4 models
    76125 
    76126 > hide #!5 models
    76127 
    76128 > hide #!6 models
    76129 
    76130 > hide #!7 models
    76131 
    76132 > hide #!8 models
    76133 
    76134 > hide #!9 models
    76135 
    76136 > hide #!10 models
    76137 
    76138 > hide #!11 models
    76139 
    76140 > hide #!12 models
    76141 
    76142 > hide #!13 models
    76143 
    76144 > hide #!14 models
    76145 
    76146 > hide #!15 models
    76147 
    76148 > hide #!17 models
    76149 
    76150 > hide #!18 models
    76151 
    76152 > hide #!19 models
    76153 
    76154 > hide #!20 models
    76155 
    76156 > hide #!21 models
    76157 
    76158 > hide #!16 models
    76159 
    76160 > hide #!22 models
    76161 
    76162 > hide #!22-57 models
    76163 
    76164 > hide #!88 models
    76165 
    76166 > hide #!89 models
    76167 
    76168 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    76169 > Compositions/Resegment_for-C17_FlgY/C17-FlgY_New.mrc"
    76170 
    76171 Opened C17-FlgY_New.mrc as #90, grid size 256,256,256, pixel 2.14, shown at
    76172 level 0.0212, step 1, values float32 
    76173 
    76174 > select add #90
    76175 
    76176 2 models selected 
    76177 
    76178 > ui mousemode right "translate selected models"
    76179 
    76180 > view matrix models #90,1,0,0,245.65,0,1,0,1.0032,0,0,1,74.641
    76181 
    76182 > view matrix models #90,1,0,0,184.1,0,1,0,167.05,0,0,1,228.41
    76183 
    76184 > view matrix models #90,1,0,0,271.38,0,1,0,269.89,0,0,1,245.5
    76185 
    76186 > view matrix models #90,1,0,0,244.99,0,1,0,277.14,0,0,1,184.64
    76187 
    76188 > ui tool show "Fit in Map"
    76189 
    76190 > fitmap #90 inMap #78
    76191 
    76192 Fit map C17-FlgY_New.mrc in map E-ring.mrc gaussian using 167766 points 
    76193 correlation = 0.1097, correlation about mean = 0.1148, overlap = 135.6 
    76194 steps = 320, shift = 15.1, angle = 1.23 degrees 
    76195  
    76196 Position of C17-FlgY_New.mrc (#90) relative to E-ring.mrc gaussian (#78)
    76197 coordinates: 
    76198 Matrix rotation and translation 
    76199 0.99982891 -0.00230575 0.01835296 226.46472726 
    76200 0.00250823 0.99993617 -0.01101686 275.00777671 
    76201 -0.01832639 0.01106101 0.99977087 181.62569917 
    76202 Axis 0.51247229 0.85140226 0.11174234 
    76203 Axis point 7675.61342484 0.00000000 -1922.49036663 
    76204 Rotation angle (degrees) 1.23427829 
    76205 Shift along axis 370.49441986 
    76206  
    76207 
    76208 > view matrix models
    76209 > #90,0.99983,-0.0023058,0.018353,248.02,0.0025082,0.99994,-0.011017,262.05,-0.018326,0.011061,0.99977,185.52
    76210 
    76211 > view matrix models
    76212 > #90,0.99983,-0.0023058,0.018353,253.83,0.0025082,0.99994,-0.011017,271.25,-0.018326,0.011061,0.99977,188.02
    76213 
    76214 > ui mousemode right "rotate selected models"
    76215 
    76216 > view matrix models
    76217 > #90,0.99448,0.10449,0.0096588,228.95,-0.10438,0.99447,-0.011667,302.12,-0.010824,0.010595,0.99989,186.06
    76218 
    76219 > ui mousemode right "translate selected models"
    76220 
    76221 > view matrix models
    76222 > #90,0.99448,0.10449,0.0096588,229.04,-0.10438,0.99447,-0.011667,285.58,-0.010824,0.010595,0.99989,187.22
    76223 
    76224 > fitmap #90 inMap #78
    76225 
    76226 Fit map C17-FlgY_New.mrc in map E-ring.mrc gaussian using 167766 points 
    76227 correlation = 0.6839, correlation about mean = 0.321, overlap = 935.3 
    76228 steps = 64, shift = 13.7, angle = 4.51 degrees 
    76229  
    76230 Position of C17-FlgY_New.mrc (#90) relative to E-ring.mrc gaussian (#78)
    76231 coordinates: 
    76232 Matrix rotation and translation 
    76233 0.98351554 0.18082356 0.00011815 217.33566048 
    76234 -0.18082356 0.98351555 0.00001166 316.52533809 
    76235 -0.00011410 -0.00003283 0.99999999 179.33555985 
    76236 Axis -0.00012301 0.00064219 -0.99999979 
    76237 Axis point 1845.32525184 -1033.57351932 0.00000000 
    76238 Rotation angle (degrees) 10.41773572 
    76239 Shift along axis -179.15898502 
    76240  
    76241 
    76242 > fitmap #90 inMap #78
    76243 
    76244 Fit map C17-FlgY_New.mrc in map E-ring.mrc gaussian using 167766 points 
    76245 correlation = 0.6836, correlation about mean = 0.3202, overlap = 934.5 
    76246 steps = 28, shift = 0.134, angle = 0.000421 degrees 
    76247  
    76248 Position of C17-FlgY_New.mrc (#90) relative to E-ring.mrc gaussian (#78)
    76249 coordinates: 
    76250 Matrix rotation and translation 
    76251 0.98351572 0.18082259 0.00011753 217.33678736 
    76252 -0.18082259 0.98351573 0.00000441 316.52723110 
    76253 -0.00011479 -0.00002559 0.99999999 179.19963162 
    76254 Axis -0.00008294 0.00064239 -0.99999979 
    76255 Axis point 1845.34897778 -1033.62473418 0.00000000 
    76256 Rotation angle (degrees) 10.41767902 
    76257 Shift along axis -179.01428601 
    76258  
    76259 
    76260 > fitmap #90 inMap #78
    76261 
    76262 Fit map C17-FlgY_New.mrc in map E-ring.mrc gaussian using 167766 points 
    76263 correlation = 0.6839, correlation about mean = 0.3209, overlap = 935.1 
    76264 steps = 28, shift = 0.105, angle = 0.00708 degrees 
    76265  
    76266 Position of C17-FlgY_New.mrc (#90) relative to E-ring.mrc gaussian (#78)
    76267 coordinates: 
    76268 Matrix rotation and translation 
    76269 0.98349340 0.18094397 0.00011842 217.30906338 
    76270 -0.18094397 0.98349341 0.00001137 316.56441860 
    76271 -0.00011441 -0.00003261 0.99999999 179.30672010 
    76272 Axis -0.00012152 0.00064339 -0.99999979 
    76273 Axis point 1844.35230864 -1032.60313161 0.00000000 
    76274 Rotation angle (degrees) 10.42475041 
    76275 Shift along axis -179.12941598 
    76276  
    76277 
    76278 > fitmap #90 inMap #78
    76279 
    76280 Fit map C17-FlgY_New.mrc in map E-ring.mrc gaussian using 167766 points 
    76281 correlation = 0.6839, correlation about mean = 0.3209, overlap = 935.2 
    76282 steps = 24, shift = 0.00918, angle = 0.00599 degrees 
    76283  
    76284 Position of C17-FlgY_New.mrc (#90) relative to E-ring.mrc gaussian (#78)
    76285 coordinates: 
    76286 Matrix rotation and translation 
    76287 0.98351231 0.18084116 0.00011826 217.33198706 
    76288 -0.18084116 0.98351232 0.00001196 316.53064101 
    76289 -0.00011415 -0.00003315 0.99999999 179.31597535 
    76290 Axis -0.00012470 0.00064260 -0.99999979 
    76291 Axis point 1845.18083989 -1033.43111010 0.00000000 
    76292 Rotation angle (degrees) 10.41876093 
    76293 Shift along axis -179.13963772 
    76294  
    76295 
    76296 > fitmap #90 inMap #78
    76297 
    76298 Fit map C17-FlgY_New.mrc in map E-ring.mrc gaussian using 167766 points 
    76299 correlation = 0.6839, correlation about mean = 0.3209, overlap = 935.2 
    76300 steps = 24, shift = 0.000454, angle = 0.000298 degrees 
    76301  
    76302 Position of C17-FlgY_New.mrc (#90) relative to E-ring.mrc gaussian (#78)
    76303 coordinates: 
    76304 Matrix rotation and translation 
    76305 0.98351325 0.18083604 0.00011821 217.33313816 
    76306 -0.18083604 0.98351326 0.00001201 316.52893273 
    76307 -0.00011409 -0.00003319 0.99999999 179.31642449 
    76308 Axis -0.00012498 0.00064231 -0.99999979 
    76309 Axis point 1845.22172311 -1033.47232911 0.00000000 
    76310 Rotation angle (degrees) 10.41846272 
    76311 Shift along axis -179.14023835 
    76312  
    76313 
    76314 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    76315 > Compositions/Resegment_for-C17_FlgY/MS-ring_New.mrc"
    76316 
    76317 Opened MS-ring_New.mrc as #91, grid size 256,256,256, pixel 2.14, shown at
    76318 level 0.0165, step 1, values float32 
    76319 
    76320 > select subtract #90
    76321 
    76322 Nothing selected 
    76323 
    76324 > select add #91
    76325 
    76326 2 models selected 
    76327 
    76328 > view matrix models #91,1,0,0,291.47,0,1,0,121.38,0,0,1,153.39
    76329 
    76330 > view matrix models #91,1,0,0,259.76,0,1,0,253.65,0,0,1,124.48
    76331 
    76332 > view matrix models #91,1,0,0,266.47,0,1,0,253.28,0,0,1,170.43
    76333 
    76334 > view matrix models #91,1,0,0,260.49,0,1,0,263.72,0,0,1,170.63
    76335 
    76336 > fitmap #91 inMap #76
    76337 
    76338 Fit map MS-ring_New.mrc in map MS-ring.mrc using 167703 points 
    76339 correlation = 0.7299, correlation about mean = 0.3966, overlap = 644.1 
    76340 steps = 56, shift = 6.57, angle = 0.63 degrees 
    76341  
    76342 Position of MS-ring_New.mrc (#91) relative to MS-ring.mrc (#76) coordinates: 
    76343 Matrix rotation and translation 
    76344 0.99993954 -0.01099523 -0.00014578 265.54423379 
    76345 0.01099524 0.99993955 0.00001435 259.52130179 
    76346 0.00014562 -0.00001595 0.99999999 176.74014177 
    76347 Axis -0.00137748 -0.01324995 0.99991127 
    76348 Axis point -23677.83582371 24302.71072857 0.00000000 
    76349 Rotation angle (degrees) 0.63004917 
    76350 Shift along axis 172.92003226 
    76351  
    76352 
    76353 > fitmap #91 inMap #76
    76354 
    76355 Fit map MS-ring_New.mrc in map MS-ring.mrc using 167703 points 
    76356 correlation = 0.7298, correlation about mean = 0.3962, overlap = 644.3 
    76357 steps = 40, shift = 0.0436, angle = 0.404 degrees 
    76358  
    76359 Position of MS-ring_New.mrc (#91) relative to MS-ring.mrc (#76) coordinates: 
    76360 Matrix rotation and translation 
    76361 0.99983748 -0.01802647 0.00025465 267.36720617 
    76362 0.01802647 0.99983751 0.00001754 257.63185173 
    76363 -0.00025492 -0.00001295 0.99999997 176.88955347 
    76364 Axis -0.00084577 0.01413266 0.99989977 
    76365 Axis point -14015.61177085 14966.74136379 0.00000000 
    76366 Rotation angle (degrees) 1.03300013 
    76367 Shift along axis 180.28671713 
    76368  
    76369 
    76370 > fitmap #91 inMap #76
    76371 
    76372 Fit map MS-ring_New.mrc in map MS-ring.mrc using 167703 points 
    76373 correlation = 0.7297, correlation about mean = 0.3958, overlap = 644.7 
    76374 steps = 48, shift = 0.064, angle = 0.0699 degrees 
    76375  
    76376 Position of MS-ring_New.mrc (#91) relative to MS-ring.mrc (#76) coordinates: 
    76377 Matrix rotation and translation 
    76378 0.99981486 -0.01924111 0.00016948 267.72835743 
    76379 0.01924110 0.99981487 0.00010263 257.27485766 
    76380 -0.00017142 -0.00009935 0.99999998 176.95402408 
    76381 Axis -0.00524842 0.00885831 0.99994699 
    76382 Axis point -13153.68310891 14089.46165095 0.00000000 
    76383 Rotation angle (degrees) 1.10256055 
    76384 Shift along axis 177.81851213 
    76385  
    76386 
    76387 > fitmap #91 inMap #76
    76388 
    76389 Fit map MS-ring_New.mrc in map MS-ring.mrc using 167703 points 
    76390 correlation = 0.7298, correlation about mean = 0.3963, overlap = 644.2 
    76391 steps = 48, shift = 0.0759, angle = 0.0477 degrees 
    76392  
    76393 Position of MS-ring_New.mrc (#91) relative to MS-ring.mrc (#76) coordinates: 
    76394 Matrix rotation and translation 
    76395 0.99979850 -0.02007278 0.00019300 267.95352720 
    76396 0.02007277 0.99979852 0.00008478 257.05746254 
    76397 -0.00019466 -0.00008089 0.99999998 176.87940534 
    76398 Axis -0.00412629 0.00965567 0.99994487 
    76399 Axis point -12584.90928667 13512.07043080 0.00000000 
    76400 Rotation angle (degrees) 1.15022591 
    76401 Shift along axis 178.24606312 
    76402  
    76403 
    76404 > fitmap #91 inMap #76
    76405 
    76406 Fit map MS-ring_New.mrc in map MS-ring.mrc using 167703 points 
    76407 correlation = 0.7297, correlation about mean = 0.3959, overlap = 644.6 
    76408 steps = 40, shift = 0.0654, angle = 0.0573 degrees 
    76409  
    76410 Position of MS-ring_New.mrc (#91) relative to MS-ring.mrc (#76) coordinates: 
    76411 Matrix rotation and translation 
    76412 0.99981759 -0.01909930 -0.00003711 267.75321626 
    76413 0.01909930 0.99981759 0.00007701 257.32313906 
    76414 0.00003563 -0.00007771 1.00000000 176.88069568 
    76415 Axis -0.00405033 -0.00190407 0.99998998 
    76416 Axis point -13354.92044279 14183.73056555 0.00000000 
    76417 Rotation angle (degrees) 1.09438682 
    76418 Shift along axis 175.30447343 
    76419  
    76420 
    76421 > hide #!76 models
    76422 
    76423 > show #!76 models
    76424 
    76425 > select subtract #91
    76426 
    76427 Nothing selected 
    76428 
    76429 > hide #!91 models
    76430 
    76431 > show #!91 models
    76432 
    76433 > hide #!76 models
    76434 
    76435 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    76436 > Compositions/Single_Cage_unit.mrc"
    76437 
    76438 Opened Single_Cage_unit.mrc as #92, grid size 200,200,200, pixel 2.14, shown
    76439 at level 0.00107, step 1, values float32 
    76440 
    76441 > hide #!78 models
    76442 
    76443 > select add #92
    76444 
    76445 2 models selected 
    76446 
    76447 > view matrix models #92,1,0,0,704.7,0,1,0,201.74,0,0,1,279.53
    76448 
    76449 > volume #92 level 0.001585
    76450 
    76451 > surface dust #92 size 21.4
    76452 
    76453 > view matrix models #92,1,0,0,603.05,0,1,0,250.24,0,0,1,261.5
    76454 
    76455 > view matrix models #92,1,0,0,598.33,0,1,0,250.84,0,0,1,244.9
    76456 
    76457 > view matrix models #92,1,0,0,575.39,0,1,0,253.1,0,0,1,244.59
    76458 
    76459 > fitmap #92 inMap #73
    76460 
    76461 Fit map Single_Cage_unit.mrc in map Cage-Mono-Good.mrc copy using 34592 points 
    76462 correlation = 0.894, correlation about mean = 0.8133, overlap = 137.7 
    76463 steps = 204, shift = 16.6, angle = 11.3 degrees 
    76464  
    76465 Position of Single_Cage_unit.mrc (#92) relative to Cage-Mono-Good.mrc copy
    76466 (#73) coordinates: 
    76467 Matrix rotation and translation 
    76468 0.85084055 -0.52520357 -0.01521737 688.24289033 
    76469 0.52349429 0.84984002 -0.06103828 395.07505258 
    76470 0.04498985 0.04396764 0.99801942 212.17994558 
    76471 Axis 0.09946944 -0.05703277 0.99340480 
    76472 Axis point -389.02391770 1372.29633513 0.00000000 
    76473 Rotation angle (degrees) 31.85895864 
    76474 Shift along axis 256.70748721 
    76475  
    76476 
    76477 > fitmap #92 inMap #73
    76478 
    76479 Fit map Single_Cage_unit.mrc in map Cage-Mono-Good.mrc copy using 34592 points 
    76480 correlation = 0.8937, correlation about mean = 0.8129, overlap = 137.7 
    76481 steps = 44, shift = 0.14, angle = 0.132 degrees 
    76482  
    76483 Position of Single_Cage_unit.mrc (#92) relative to Cage-Mono-Good.mrc copy
    76484 (#73) coordinates: 
    76485 Matrix rotation and translation 
    76486 0.85111163 -0.52478264 -0.01456634 687.93682375 
    76487 0.52300606 0.84998400 -0.06318116 395.78421808 
    76488 0.04553753 0.04615593 0.99789577 211.64041367 
    76489 Axis 0.10361828 -0.05696018 0.99298479 
    76490 Axis point -391.71924113 1370.91624424 0.00000000 
    76491 Rotation angle (degrees) 31.84313889 
    76492 Shift along axis 258.89460578 
    76493  
    76494 
    76495 > hide #!73 models
    76496 
    76497 > hide #!84 models
    76498 
    76499 > select clear
    76500 
    76501 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    76502 > Compositions/Single_MotBpg_unit.mrc"
    76503 
    76504 Opened Single_MotBpg_unit.mrc as #93, grid size 200,200,200, pixel 2.14, shown
    76505 at level 0.000906, step 1, values float32 
    76506 
    76507 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    76508 > Compositions/Single_Cage_unit.mrc"
    76509 
    76510 Opened Single_Cage_unit.mrc as #94, grid size 200,200,200, pixel 2.14, shown
    76511 at level 0.00107, step 1, values float32 
    76512 
    76513 > select add #93
    76514 
    76515 2 models selected 
    76516 
    76517 > select add #94
    76518 
    76519 4 models selected 
    76520 
    76521 > view matrix models
    76522 > #93,1,0,0,423.77,0,1,0,326.57,0,0,1,-198.88,#94,1,0,0,423.77,0,1,0,326.57,0,0,1,-198.88
    76523 
    76524 > view matrix models
    76525 > #93,1,0,0,553.22,0,1,0,257.53,0,0,1,-173.52,#94,1,0,0,553.22,0,1,0,257.53,0,0,1,-173.52
    76526 
    76527 > view matrix models
    76528 > #93,1,0,0,633.8,0,1,0,242.26,0,0,1,163.41,#94,1,0,0,633.8,0,1,0,242.26,0,0,1,163.41
    76529 
    76530 > view matrix models
    76531 > #93,1,0,0,584.51,0,1,0,253.75,0,0,1,164.38,#94,1,0,0,584.51,0,1,0,253.75,0,0,1,164.38
    76532 
    76533 > view matrix models
    76534 > #93,1,0,0,584.09,0,1,0,250.32,0,0,1,244.11,#94,1,0,0,584.09,0,1,0,250.32,0,0,1,244.11
    76535 
    76536 > view matrix models
    76537 > #93,1,0,0,568.99,0,1,0,264.34,0,0,1,246.68,#94,1,0,0,568.99,0,1,0,264.34,0,0,1,246.68
    76538 
    76539 > close #94
    76540 
    76541 > surface dust #93 size 21.4
    76542 
    76543 > fitmap #93 inMap #81
    76544 
    76545 Fit map Single_MotBpg_unit.mrc in map MotB.mrc using 79697 points 
    76546 correlation = 0.6163, correlation about mean = 0.7395, overlap = 76.2 
    76547 steps = 1036, shift = 18.9, angle = 15.8 degrees 
    76548  
    76549 Position of Single_MotBpg_unit.mrc (#93) relative to MotB.mrc (#81)
    76550 coordinates: 
    76551 Matrix rotation and translation 
    76552 0.96291147 0.21432700 0.16390679 496.18471925 
    76553 -0.21988562 0.97538880 0.01633999 323.01791718 
    76554 -0.15637075 -0.05177472 0.98634049 282.69998534 
    76555 Axis -0.12524856 0.58892269 -0.79842524 
    76556 Axis point 1945.55949190 -1921.35819287 0.00000000 
    76557 Rotation angle (degrees) 15.77843975 
    76558 Shift along axis -97.62864004 
    76559  
    76560 
    76561 > fitmap #93 inMap #81
    76562 
    76563 Fit map Single_MotBpg_unit.mrc in map MotB.mrc using 79697 points 
    76564 correlation = 0.6164, correlation about mean = 0.7397, overlap = 76.2 
    76565 steps = 64, shift = 0.179, angle = 0.0698 degrees 
    76566  
    76567 Position of Single_MotBpg_unit.mrc (#93) relative to MotB.mrc (#81)
    76568 coordinates: 
    76569 Matrix rotation and translation 
    76570 0.96261273 0.21530646 0.16437718 496.05703745 
    76571 -0.22080365 0.97519165 0.01571595 323.41930659 
    76572 -0.15691551 -0.05142346 0.98627235 282.85027814 
    76573 Axis -0.12300460 0.58863307 -0.79898747 
    76574 Axis point 1937.21793975 -1912.35827810 0.00000000 
    76575 Rotation angle (degrees) 15.83775503 
    76576 Shift along axis -96.63582434 
    76577  
    76578 
    76579 > hide #!81 models
    76580 
    76581 > select clear
    76582 
    76583 > show #!85 models
    76584 
    76585 > save "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    76586 > Compositions/Building_Composition.cxs" includeMaps true
    76587 
    76588 ——— End of log from Tue Sep 9 10:34:35 2025 ———
    76589 
    76590 opened ChimeraX session 
    76591 
    76592 > hide #!58-82 models
    76593 
    76594 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    76595 > Compositions/Resegment-PflABCD/1unit_PflABCD.mrc"
    76596 
    76597 Opened 1unit_PflABCD.mrc as #94, grid size 200,200,200, pixel 2.14, shown at
    76598 level 0.0254, step 1, values float32 
    76599 
    76600 > volume #94 level 0.006399
    76601 
    76602 > show #!73 models
    76603 
    76604 > select add #94
    76605 
    76606 2 models selected 
    76607 
    76608 > view matrix models #94,1,0,0,134.96,0,1,0,267.28,0,0,1,-152.38
    76609 
    76610 > view matrix models #94,1,0,0,616.66,0,1,0,273.81,0,0,1,250.99
    76611 
    76612 > view matrix models #94,1,0,0,614.55,0,1,0,260.12,0,0,1,251.89
    76613 
    76614 > view matrix models #94,1,0,0,563.09,0,1,0,258.63,0,0,1,232.09
    76615 
    76616 > ui mousemode right "rotate selected models"
    76617 
    76618 > view matrix models
    76619 > #94,0.98847,0.15032,0.017943,537.22,-0.15005,0.98855,-0.015814,295.14,-0.020114,0.012939,0.99971,234.24
    76620 
    76621 > ui mousemode right "translate selected models"
    76622 
    76623 > view matrix models
    76624 > #94,0.98847,0.15032,0.017943,545.83,-0.15005,0.98855,-0.015814,312.83,-0.020114,0.012939,0.99971,240.63
    76625 
    76626 > ui tool show "Fit in Map"
    76627 
    76628 > fitmap #94 inMap #73
    76629 
    76630 Fit map 1unit_PflABCD.mrc in map Cage-Mono-Good.mrc copy using 172147 points 
    76631 correlation = 0.3775, correlation about mean = 0.2345, overlap = 170.4 
    76632 steps = 64, shift = 7.13, angle = 1.7 degrees 
    76633  
    76634 Position of 1unit_PflABCD.mrc (#94) relative to Cage-Mono-Good.mrc copy (#73)
    76635 coordinates: 
    76636 Matrix rotation and translation 
    76637 0.84722403 -0.53100503 0.01565581 683.75620450 
    76638 0.53108654 0.84731663 -0.00127003 378.56488217 
    76639 -0.01259103 0.00939059 0.99987663 237.53110681 
    76640 Axis 0.01003334 0.02658474 0.99959621 
    76641 Axis point -305.96006063 1370.88620298 0.00000000 
    76642 Rotation angle (degrees) 32.09064827 
    76643 Shift along axis 254.35960048 
    76644  
    76645 
    76646 > fitmap #94 inMap #73
    76647 
    76648 Fit map 1unit_PflABCD.mrc in map Cage-Mono-Good.mrc copy using 172147 points 
    76649 correlation = 0.3775, correlation about mean = 0.2345, overlap = 170.4 
    76650 steps = 40, shift = 0.0474, angle = 0.0132 degrees 
    76651  
    76652 Position of 1unit_PflABCD.mrc (#94) relative to Cage-Mono-Good.mrc copy (#73)
    76653 coordinates: 
    76654 Matrix rotation and translation 
    76655 0.84715231 -0.53111398 0.01584006 683.73927411 
    76656 0.53119663 0.84724769 -0.00122224 378.49374197 
    76657 -0.01277131 0.00944961 0.99987379 237.58259702 
    76658 Axis 0.01004173 0.02692202 0.99958710 
    76659 Axis point -305.53002615 1370.48324286 0.00000000 
    76660 Rotation angle (degrees) 32.09838562 
    76661 Shift along axis 254.54024033 
    76662  
    76663 
    76664 > fitmap #94 inMap #73
    76665 
    76666 Fit map 1unit_PflABCD.mrc in map Cage-Mono-Good.mrc copy using 172147 points 
    76667 correlation = 0.3775, correlation about mean = 0.2345, overlap = 170.4 
    76668 steps = 44, shift = 0.0335, angle = 0.016 degrees 
    76669  
    76670 Position of 1unit_PflABCD.mrc (#94) relative to Cage-Mono-Good.mrc copy (#73)
    76671 coordinates: 
    76672 Matrix rotation and translation 
    76673 0.84703176 -0.53130938 0.01573358 683.84612052 
    76674 0.53138952 0.84712689 -0.00110162 378.40957007 
    76675 -0.01274304 0.00929377 0.99987561 237.60613942 
    76676 Axis 0.00977809 0.02678562 0.99959338 
    76677 Axis point -305.09112739 1370.25341209 0.00000000 
    76678 Rotation angle (degrees) 32.11129691 
    76679 Shift along axis 254.33216755 
    76680  
    76681 
    76682 > close #93
    76683 
    76684 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    76685 > Compositions/Resegment-PflABCD/1xMotBpg-09092025.mrc"
    76686 
    76687 Opened 1xMotBpg-09092025.mrc as #93, grid size 200,200,200, pixel 2.14, shown
    76688 at level 0.00231, step 1, values float32 
    76689 
    76690 > select subtract #94
    76691 
    76692 Nothing selected 
    76693 
    76694 > select add #93
    76695 
    76696 2 models selected 
    76697 
    76698 > view matrix models #93,1,0,0,321.52,0,1,0,-29.634,0,0,1,-6.3464
    76699 
    76700 > view matrix models #93,1,0,0,590.01,0,1,0,120.49,0,0,1,62.951
    76701 
    76702 > hide #!85 models
    76703 
    76704 > view matrix models #93,1,0,0,612.95,0,1,0,203.95,0,0,1,215.29
    76705 
    76706 > view matrix models #93,1,0,0,562.32,0,1,0,257.83,0,0,1,248.36
    76707 
    76708 > view matrix models #93,1,0,0,563.74,0,1,0,271.47,0,0,1,236.73
    76709 
    76710 > fitmap #93 inMap #94
    76711 
    76712 Fit map 1xMotBpg-09092025.mrc in map 1unit_PflABCD.mrc using 77865 points 
    76713 correlation = 0.9993, correlation about mean = 0.9993, overlap = 14.25 
    76714 steps = 188, shift = 17, angle = 10.3 degrees 
    76715  
    76716 Position of 1xMotBpg-09092025.mrc (#93) relative to 1unit_PflABCD.mrc (#94)
    76717 coordinates: 
    76718 Matrix rotation and translation 
    76719 0.99999961 -0.00039220 0.00078983 0.04468720 
    76720 0.00039242 0.99999989 -0.00027317 0.02089191 
    76721 -0.00078972 0.00027348 0.99999965 0.02286352 
    76722 Axis 0.29605513 0.85544384 0.42493199 
    76723 Axis point 7.00681634 0.00000000 -41.27533441 
    76724 Rotation angle (degrees) 0.05289726 
    76725 Shift along axis 0.04081717 
    76726  
    76727 
    76728 > surface dust #93 size 21.4
    76729 
    76730 > save /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    76731 > includeMaps true
    76732 
    76733 > select subtract #93
    76734 
    76735 Nothing selected 
    76736 
    76737 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    76738 > Compositions/Resegment-PflABCD/1xPflD.mrc"
    76739 
    76740 Opened 1xPflD.mrc as #95, grid size 200,200,200, pixel 2.14, shown at level
    76741 0.00228, step 1, values float32 
    76742 
    76743 > select add #94
    76744 
    76745 2 models selected 
    76746 
    76747 > select subtract #94
    76748 
    76749 Nothing selected 
    76750 
    76751 > hide #!86 models
    76752 
    76753 > hide #!73 models
    76754 
    76755 > select add #95
    76756 
    76757 2 models selected 
    76758 
    76759 > view matrix models #95,1,0,0,360.08,0,1,0,557.3,0,0,1,108.22
    76760 
    76761 > view matrix models #95,1,0,0,511.15,0,1,0,235.1,0,0,1,234
    76762 
    76763 > view matrix models #95,1,0,0,548.26,0,1,0,280.14,0,0,1,227.15
    76764 
    76765 > view matrix models #95,1,0,0,568.63,0,1,0,254.58,0,0,1,233.42
    76766 
    76767 > view matrix models #95,1,0,0,573.08,0,1,0,261.87,0,0,1,235.11
    76768 
    76769 > fitmap #95 inMap #94
    76770 
    76771 Fit map 1xPflD.mrc in map 1unit_PflABCD.mrc using 78846 points 
    76772 correlation = 0.8209, correlation about mean = 0.8407, overlap = 5.624 
    76773 steps = 2000, shift = 238, angle = 106 degrees 
    76774  
    76775 Position of 1xPflD.mrc (#95) relative to 1unit_PflABCD.mrc (#94) coordinates: 
    76776 Matrix rotation and translation 
    76777 0.44871392 -0.03658823 -0.89292616 442.77007253 
    76778 -0.88403945 0.12815784 -0.44949952 586.83714695 
    76779 0.13088188 0.99107864 0.02516077 54.01643407 
    76780 Axis 0.73498676 -0.52234955 -0.43237184 
    76781 Axis point 0.00000000 421.79210823 482.25137983 
    76782 Rotation angle (degrees) 101.47753696 
    76783 Shift along axis -4.45916358 
    76784  
    76785 
    76786 > fitmap #95 inMap #94
    76787 
    76788 Fit map 1xPflD.mrc in map 1unit_PflABCD.mrc using 78846 points 
    76789 correlation = 0.8598, correlation about mean = 0.8825, overlap = 5.862 
    76790 steps = 2000, shift = 181, angle = 78.1 degrees 
    76791  
    76792 Position of 1xPflD.mrc (#95) relative to 1unit_PflABCD.mrc (#94) coordinates: 
    76793 Matrix rotation and translation 
    76794 -0.02391511 -0.78326783 -0.62122426 657.29982054 
    76795 -0.79318482 -0.36337187 0.48869083 375.16815684 
    76796 -0.60851123 0.50443275 -0.61258607 573.31264207 
    76797 Axis 0.69858872 -0.56417411 -0.44009246 
    76798 Axis point 0.00000000 450.69566568 495.19894104 
    76799 Rotation angle (degrees) 179.35443813 
    76800 Shift along axis -4.78849562 
    76801  
    76802 
    76803 > volume #95 level 0.002032
    76804 
    76805 > ui mousemode right "rotate selected models"
    76806 
    76807 > view matrix models
    76808 > #95,0.98255,0.0020586,0.186,681.77,0.042772,-0.97564,-0.21515,727.54,0.18102,0.21935,-0.95871,774.82
    76809 
    76810 > view matrix models
    76811 > #95,0.93452,-0.2697,0.23225,740.01,-0.25906,-0.96288,-0.075776,759.41,0.24407,0.010648,-0.9697,808.17
    76812 
    76813 > view matrix models
    76814 > #95,0.95575,-0.2707,0.11518,760.63,-0.2702,-0.96259,-0.020269,749.9,0.11635,-0.011749,-0.99314,845.12
    76815 
    76816 > ui mousemode right "translate selected models"
    76817 
    76818 > view matrix models
    76819 > #95,0.95575,-0.2707,0.11518,635.07,-0.2702,-0.96259,-0.020269,809.33,0.11635,-0.011749,-0.99314,807.67
    76820 
    76821 > view matrix models
    76822 > #95,0.95575,-0.2707,0.11518,636.37,-0.2702,-0.96259,-0.020269,771.31,0.11635,-0.011749,-0.99314,834.5
    76823 
    76824 > view matrix models
    76825 > #95,0.95575,-0.2707,0.11518,627.99,-0.2702,-0.96259,-0.020269,758.59,0.11635,-0.011749,-0.99314,823.54
    76826 
    76827 > view matrix models
    76828 > #95,0.95575,-0.2707,0.11518,609.79,-0.2702,-0.96259,-0.020269,772.68,0.11635,-0.011749,-0.99314,826.49
    76829 
    76830 > fitmap #95 inMap #94
    76831 
    76832 Fit map 1xPflD.mrc in map 1unit_PflABCD.mrc using 114776 points 
    76833 correlation = 0.6933, correlation about mean = 0.7102, overlap = 5.309 
    76834 steps = 2000, shift = 130, angle = 50.4 degrees 
    76835  
    76836 Position of 1xPflD.mrc (#95) relative to 1unit_PflABCD.mrc (#94) coordinates: 
    76837 Matrix rotation and translation 
    76838 0.52455209 -0.11161180 0.84403075 -102.83118592 
    76839 -0.15504536 -0.98731516 -0.03420095 486.03876715 
    76840 0.83714159 -0.11292287 -0.53520312 260.07931488 
    76841 Axis -0.87301496 0.07639984 -0.48167204 
    76842 Axis point 0.00000000 241.88964464 152.13052619 
    76843 Rotation angle (degrees) 177.41587276 
    76844 Shift along axis 1.63351334 
    76845  
    76846 
    76847 > close #95
    76848 
    76849 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    76850 > Compositions/Resegment-PflABCD/1xPflD.mrc"
    76851 
    76852 Opened 1xPflD.mrc as #95, grid size 200,200,200, pixel 2.14, shown at level
    76853 0.00228, step 1, values float32 
    76854 
    76855 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    76856 > Compositions/Resegment-PflABCD/1unit_PflABCD.mrc"
    76857 
    76858 Opened 1unit_PflABCD.mrc as #96, grid size 200,200,200, pixel 2.14, shown at
    76859 level 0.0254, step 1, values float32 
    76860 
    76861 > select add #95
    76862 
    76863 2 models selected 
    76864 
    76865 > view matrix models #95,1,0,0,658.55,0,1,0,85.496,0,0,1,168.29
    76866 
    76867 > undo
    76868 
    76869 > select add #96
    76870 
    76871 4 models selected 
    76872 
    76873 > view matrix models
    76874 > #95,1,0,0,626.4,0,1,0,50.751,0,0,1,154.84,#96,1,0,0,626.4,0,1,0,50.751,0,0,1,154.84
    76875 
    76876 > view matrix models
    76877 > #95,1,0,0,592.4,0,1,0,246.58,0,0,1,207.61,#96,1,0,0,592.4,0,1,0,246.58,0,0,1,207.61
    76878 
    76879 > view matrix models
    76880 > #95,1,0,0,591.84,0,1,0,256.22,0,0,1,244.02,#96,1,0,0,591.84,0,1,0,256.22,0,0,1,244.02
    76881 
    76882 > view matrix models
    76883 > #95,1,0,0,575.69,0,1,0,261.67,0,0,1,234.11,#96,1,0,0,575.69,0,1,0,261.67,0,0,1,234.11
    76884 
    76885 > view matrix models
    76886 > #95,1,0,0,575.88,0,1,0,260.53,0,0,1,234.52,#96,1,0,0,575.88,0,1,0,260.53,0,0,1,234.52
    76887 
    76888 > view matrix models
    76889 > #95,1,0,0,575.38,0,1,0,263.66,0,0,1,233.96,#96,1,0,0,575.38,0,1,0,263.66,0,0,1,233.96
    76890 
    76891 > view matrix models
    76892 > #95,1,0,0,575.14,0,1,0,258.24,0,0,1,239.73,#96,1,0,0,575.14,0,1,0,258.24,0,0,1,239.73
    76893 
    76894 > ui mousemode right "rotate selected models"
    76895 
    76896 > view matrix models
    76897 > #95,0.99997,2.0466e-05,0.0077597,573.49,-3.7193e-05,1,0.0021554,257.79,-0.0077596,-0.0021556,0.99997,241.85,#96,0.99997,2.0466e-05,0.0077597,573.49,-3.7193e-05,1,0.0021554,257.79,-0.0077596,-0.0021556,0.99997,241.85
    76898 
    76899 > undo
    76900 
    76901 > view matrix models
    76902 > #95,0.97176,0.23585,-0.0074376,532.52,-0.23555,0.97144,0.028666,308.37,0.013986,-0.026104,0.99956,242.4,#96,0.97176,0.23585,-0.0074376,532.52,-0.23555,0.97144,0.028666,308.37,0.013986,-0.026104,0.99956,242.4
    76903 
    76904 > ui mousemode right "translate selected models"
    76905 
    76906 > view matrix models
    76907 > #95,0.97176,0.23585,-0.0074376,541.01,-0.23555,0.97144,0.028666,323.91,0.013986,-0.026104,0.99956,240.71,#96,0.97176,0.23585,-0.0074376,541.01,-0.23555,0.97144,0.028666,323.91,0.013986,-0.026104,0.99956,240.71
    76908 
    76909 > view matrix models
    76910 > #95,0.97176,0.23585,-0.0074376,541.48,-0.23555,0.97144,0.028666,322.49,0.013986,-0.026104,0.99956,240.86,#96,0.97176,0.23585,-0.0074376,541.48,-0.23555,0.97144,0.028666,322.49,0.013986,-0.026104,0.99956,240.86
    76911 
    76912 > view matrix models
    76913 > #95,0.97176,0.23585,-0.0074376,543.62,-0.23555,0.97144,0.028666,335.39,0.013986,-0.026104,0.99956,239.37,#96,0.97176,0.23585,-0.0074376,543.62,-0.23555,0.97144,0.028666,335.39,0.013986,-0.026104,0.99956,239.37
    76914 
    76915 > view orient
    76916 
    76917 > ui mousemode right "rotate selected models"
    76918 
    76919 > view matrix models
    76920 > #95,0.99866,0.050244,-0.012661,578.52,-0.049891,0.9984,0.026772,290.52,0.013986,-0.026104,0.99956,239.37,#96,0.99866,0.050244,-0.012661,578.52,-0.049891,0.9984,0.026772,290.52,0.013986,-0.026104,0.99956,239.37
    76921 
    76922 > ui mousemode right "translate selected models"
    76923 
    76924 > view matrix models
    76925 > #95,0.99866,0.050244,-0.012661,561.81,-0.049891,0.9984,0.026772,290.83,0.013986,-0.026104,0.99956,239.37,#96,0.99866,0.050244,-0.012661,561.81,-0.049891,0.9984,0.026772,290.83,0.013986,-0.026104,0.99956,239.37
    76926 
    76927 > ui mousemode right "rotate selected models"
    76928 
    76929 > view matrix models
    76930 > #95,0.98842,0.15143,-0.0098752,541.85,-0.15111,0.98812,0.02792,314.32,0.013986,-0.026104,0.99956,239.37,#96,0.98842,0.15143,-0.0098752,541.85,-0.15111,0.98812,0.02792,314.32,0.013986,-0.026104,0.99956,239.37
    76931 
    76932 > ui mousemode right "translate selected models"
    76933 
    76934 > view matrix models
    76935 > #95,0.98842,0.15143,-0.0098752,547.66,-0.15111,0.98812,0.02792,301.69,0.013986,-0.026104,0.99956,239.37,#96,0.98842,0.15143,-0.0098752,547.66,-0.15111,0.98812,0.02792,301.69,0.013986,-0.026104,0.99956,239.37
    76936 
    76937 > fitmap #96 inMap #94
    76938 
    76939 Fit map 1unit_PflABCD.mrc in map 1unit_PflABCD.mrc using 79988 points 
    76940 correlation = 1, correlation about mean = 1, overlap = 160.9 
    76941 steps = 84, shift = 3.24, angle = 2.99 degrees 
    76942  
    76943 Position of 1unit_PflABCD.mrc (#96) relative to 1unit_PflABCD.mrc (#94)
    76944 coordinates: 
    76945 Matrix rotation and translation 
    76946 0.99999999 0.00012179 -0.00002993 -0.00800089 
    76947 -0.00012179 0.99999999 -0.00008588 0.02768822 
    76948 0.00002992 0.00008588 1.00000000 -0.01306696 
    76949 Axis 0.56501331 -0.19686455 -0.80125171 
    76950 Axis point 228.14078409 68.02211020 0.00000000 
    76951 Rotation angle (degrees) 0.00870895 
    76952 Shift along axis 0.00049848 
    76953  
    76954 
    76955 > fitmap #95 inMap #94
    76956 
    76957 Fit map 1xPflD.mrc in map 1unit_PflABCD.mrc using 78846 points 
    76958 correlation = 0.8501, correlation about mean = 0.8718, overlap = 5.79 
    76959 steps = 2000, shift = 294, angle = 167 degrees 
    76960  
    76961 Position of 1xPflD.mrc (#95) relative to 1unit_PflABCD.mrc (#94) coordinates: 
    76962 Matrix rotation and translation 
    76963 -0.04205809 -0.56541269 -0.82373515 678.34340473 
    76964 -0.82611959 -0.44401593 0.34695285 446.71743157 
    76965 -0.56192307 0.69509592 -0.44842404 467.46909136 
    76966 Axis 0.68578189 -0.51572470 -0.51354768 
    76967 Axis point 0.00000000 434.70163018 529.49245281 
    76968 Rotation angle (degrees) 165.29577328 
    76969 Shift along axis -5.25525907 
    76970  
    76971 
    76972 > select subtract #96
    76973 
    76974 2 models selected 
    76975 
    76976 > surface dust #95 size 21.4
    76977 
    76978 > view matrix models
    76979 > #95,0.98842,0.15143,-0.0098752,547.97,-0.15111,0.98812,0.02792,301.11,0.013986,-0.026104,0.99956,236.65
    76980 
    76981 > hide #!95 models
    76982 
    76983 > show #!95 models
    76984 
    76985 > view matrix models
    76986 > #95,0.98842,0.15143,-0.0098752,547.84,-0.15111,0.98812,0.02792,301.06,0.013986,-0.026104,0.99956,237.57
    76987 
    76988 > hide #!95 models
    76989 
    76990 > show #!95 models
    76991 
    76992 > hide #!95 models
    76993 
    76994 > show #!95 models
    76995 
    76996 > ui mousemode right "rotate selected models"
    76997 
    76998 > view matrix models
    76999 > #95,0.98973,0.14292,0.00076463,545.98,-0.14287,0.98949,-0.022312,313.97,-0.0039455,0.021974,0.99975,232.44
    77000 
    77001 > hide #!95 models
    77002 
    77003 > show #!95 models
    77004 
    77005 > hide #!95 models
    77006 
    77007 > show #!95 models
    77008 
    77009 > select subtract #95
    77010 
    77011 Nothing selected 
    77012 
    77013 > close #96
    77014 
    77015 > save /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    77016 > includeMaps true
    77017 
    77018 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    77019 > Compositions/Resegment-PflABCD/1xPflC.mrc"
    77020 
    77021 Opened 1xPflC.mrc as #96, grid size 200,200,200, pixel 2.14, shown at level
    77022 0.00265, step 1, values float32 
    77023 
    77024 > select add #96
    77025 
    77026 2 models selected 
    77027 
    77028 > ui mousemode right "translate selected models"
    77029 
    77030 > view matrix models #96,1,0,0,47.658,0,1,0,167.48,0,0,1,-32.861
    77031 
    77032 > view matrix models #96,1,0,0,398.68,0,1,0,90.654,0,0,1,177.19
    77033 
    77034 > view matrix models #96,1,0,0,401.83,0,1,0,160.82,0,0,1,160.74
    77035 
    77036 > hide #!90 models
    77037 
    77038 > view matrix models #96,1,0,0,592.48,0,1,0,257.09,0,0,1,202.08
    77039 
    77040 > view matrix models #96,1,0,0,565.28,0,1,0,293.67,0,0,1,244.67
    77041 
    77042 > ui mousemode right "rotate selected models"
    77043 
    77044 > view matrix models
    77045 > #96,0.93537,0.34387,-0.082687,523.43,-0.34961,0.93434,-0.069212,396.82,0.053457,0.093647,0.99417,214.59
    77046 
    77047 > view matrix models
    77048 > #96,0.97814,0.19907,0.060063,514.76,-0.19581,0.97904,-0.056063,351.76,-0.069964,0.043077,0.99662,251.11
    77049 
    77050 > undo
    77051 
    77052 > ui mousemode right "translate selected models"
    77053 
    77054 > view matrix models
    77055 > #96,0.93537,0.34387,-0.082687,556.57,-0.34961,0.93434,-0.069212,391.56,0.053457,0.093647,0.99417,208.33
    77056 
    77057 > fitmap #96 inMap #94
    77058 
    77059 Fit map 1xPflC.mrc in map 1unit_PflABCD.mrc using 78535 points 
    77060 correlation = 0.9996, correlation about mean = 0.9994, overlap = 49.99 
    77061 steps = 220, shift = 16.6, angle = 11.8 degrees 
    77062  
    77063 Position of 1xPflC.mrc (#96) relative to 1unit_PflABCD.mrc (#94) coordinates: 
    77064 Matrix rotation and translation 
    77065 0.99999792 0.00180027 0.00095518 -0.61225302 
    77066 -0.00180227 0.99999618 0.00209512 -0.27012088 
    77067 -0.00095141 -0.00209684 0.99999735 0.43871009 
    77068 Axis -0.71695761 0.32608723 -0.61614845 
    77069 Axis point 0.00000000 232.71942073 141.89223067 
    77070 Rotation angle (degrees) 0.16750063 
    77071 Shift along axis 0.08056595 
    77072  
    77073 
    77074 > fitmap #96 inMap #94
    77075 
    77076 Fit map 1xPflC.mrc in map 1unit_PflABCD.mrc using 78535 points 
    77077 correlation = 0.9996, correlation about mean = 0.9994, overlap = 50 
    77078 steps = 44, shift = 0.0391, angle = 0.00304 degrees 
    77079  
    77080 Position of 1xPflC.mrc (#96) relative to 1unit_PflABCD.mrc (#94) coordinates: 
    77081 Matrix rotation and translation 
    77082 0.99999790 0.00179596 0.00098457 -0.61146150 
    77083 -0.00179798 0.99999628 0.00205106 -0.29518315 
    77084 -0.00098088 -0.00205282 0.99999741 0.44410267 
    77085 Axis -0.70776292 0.33896566 -0.61981766 
    77086 Axis point 0.00000000 233.48955235 153.83532488 
    77087 Rotation angle (degrees) 0.16611180 
    77088 Shift along axis 0.05745015 
    77089  
    77090 
    77091 > select subtract #96
    77092 
    77093 Nothing selected 
    77094 
    77095 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    77096 > Compositions/Resegment-PflABCD/Single-MotA-ring.mrc"
    77097 
    77098 Opened Single-MotA-ring.mrc as #97, grid size 200,200,200, pixel 2.14, shown
    77099 at level 0.00252, step 1, values float32 
    77100 
    77101 > select add #97
    77102 
    77103 2 models selected 
    77104 
    77105 > view matrix models #97,1,0,0,559.27,0,1,0,54.882,0,0,1,225.63
    77106 
    77107 > view matrix models #97,1,0,0,550.32,0,1,0,274.63,0,0,1,233.61
    77108 
    77109 > fitmap #97 inMap #94
    77110 
    77111 Fit map Single-MotA-ring.mrc in map 1unit_PflABCD.mrc using 78731 points 
    77112 correlation = 0.9998, correlation about mean = 0.9997, overlap = 12.79 
    77113 steps = 228, shift = 17.3, angle = 10.3 degrees 
    77114  
    77115 Position of Single-MotA-ring.mrc (#97) relative to 1unit_PflABCD.mrc (#94)
    77116 coordinates: 
    77117 Matrix rotation and translation 
    77118 1.00000000 0.00004806 0.00006055 -0.00771370 
    77119 -0.00004807 1.00000000 0.00005679 0.02316086 
    77120 -0.00006055 -0.00005679 1.00000000 0.04060887 
    77121 Axis -0.59202396 0.63123982 -0.50104283 
    77122 Axis point 661.04108577 0.00000000 138.75851289 
    77123 Rotation angle (degrees) 0.00549622 
    77124 Shift along axis -0.00116003 
    77125  
    77126 
    77127 > surface dust #97 size 21.4
    77128 
    77129 > select add #96
    77130 
    77131 4 models selected 
    77132 
    77133 > surface dust #96 size 21.4
    77134 
    77135 > surface dust #97 size 21.4
    77136 
    77137 > select clear
    77138 
    77139 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    77140 > Compositions/1xPflAB_region.mrc"
    77141 
    77142 Opened 1xPflAB_region.mrc as #98, grid size 200,200,200, pixel 2.14, shown at
    77143 level 0.00102, step 1, values float32 
    77144 
    77145 > select add #98
    77146 
    77147 2 models selected 
    77148 
    77149 > view matrix models #98,1,0,0,436.2,0,1,0,351.41,0,0,1,126.63
    77150 
    77151 > view matrix models #98,1,0,0,523.29,0,1,0,319.09,0,0,1,220.28
    77152 
    77153 > ui mousemode right "rotate selected models"
    77154 
    77155 > view matrix models
    77156 > #98,0.87364,0.48391,-0.050772,457.98,-0.48465,0.87471,-0.0024665,449.48,0.043217,0.026762,0.99871,205.66
    77157 
    77158 > view matrix models
    77159 > #98,0.95152,0.29602,-0.08357,488.38,-0.29459,0.95518,0.029281,385.12,0.088492,-0.0032432,0.99607,202.97
    77160 
    77161 > ui mousemode right "translate selected models"
    77162 
    77163 > view matrix models
    77164 > #98,0.95152,0.29602,-0.08357,505.6,-0.29459,0.95518,0.029281,327,0.088492,-0.0032432,0.99607,203.92
    77165 
    77166 > view matrix models
    77167 > #98,0.95152,0.29602,-0.08357,517.91,-0.29459,0.95518,0.029281,320,0.088492,-0.0032432,0.99607,212.98
    77168 
    77169 > view matrix models
    77170 > #98,0.95152,0.29602,-0.08357,534.13,-0.29459,0.95518,0.029281,316.29,0.088492,-0.0032432,0.99607,225.17
    77171 
    77172 > view matrix models
    77173 > #98,0.95152,0.29602,-0.08357,530.43,-0.29459,0.95518,0.029281,315.24,0.088492,-0.0032432,0.99607,227.07
    77174 
    77175 > fitmap #98 inMap #94
    77176 
    77177 Fit map 1xPflAB_region.mrc in map 1unit_PflABCD.mrc using 76608 points 
    77178 correlation = 0.5966, correlation about mean = 0.4565, overlap = 29.71 
    77179 steps = 664, shift = 32.6, angle = 44.6 degrees 
    77180  
    77181 Position of 1xPflAB_region.mrc (#98) relative to 1unit_PflABCD.mrc (#94)
    77182 coordinates: 
    77183 Matrix rotation and translation 
    77184 0.95592663 0.29045115 0.04292326 -42.30141462 
    77185 -0.23646452 0.67495658 0.69894073 -91.79425743 
    77186 0.17403680 -0.67828589 0.71389036 192.50582055 
    77187 Axis -0.93030712 -0.08856630 -0.35592791 
    77188 Axis point 0.00000000 180.78761442 218.07439158 
    77189 Rotation angle (degrees) 47.74845368 
    77190 Shift along axis -21.03501029 
    77191  
    77192 
    77193 > fitmap #98 inMap #94
    77194 
    77195 Fit map 1xPflAB_region.mrc in map 1unit_PflABCD.mrc using 76608 points 
    77196 correlation = 0.5966, correlation about mean = 0.4565, overlap = 29.71 
    77197 steps = 64, shift = 0.00184, angle = 0.00355 degrees 
    77198  
    77199 Position of 1xPflAB_region.mrc (#98) relative to 1unit_PflABCD.mrc (#94)
    77200 coordinates: 
    77201 Matrix rotation and translation 
    77202 0.95592836 0.29044793 0.04290646 -42.29555535 
    77203 -0.23644047 0.67492038 0.69898382 -91.80116532 
    77204 0.17405995 -0.67832328 0.71384918 192.51794182 
    77205 Axis -0.93031831 -0.08858917 -0.35589297 
    77206 Axis point 0.00000000 180.78184164 218.07817843 
    77207 Rotation angle (degrees) 47.75138103 
    77208 Shift along axis -21.03486420 
    77209  
    77210 
    77211 > surface dust #98 size 21.4
    77212 
    77213 > hide #!91 models
    77214 
    77215 > hide #!92 models
    77216 
    77217 > hide #!93 models
    77218 
    77219 > hide #!94 models
    77220 
    77221 > show #!94 models
    77222 
    77223 > hide #!95 models
    77224 
    77225 > hide #!96 models
    77226 
    77227 > hide #!97 models
    77228 
    77229 > ui mousemode right "rotate selected models"
    77230 
    77231 > view matrix models
    77232 > #98,0.80298,0.1547,0.57559,457.97,-0.051244,0.98007,-0.19192,297.88,-0.59381,0.12461,0.7949,371.39
    77233 
    77234 > view matrix models
    77235 > #98,0.77375,0.41156,0.48159,426.82,-0.30633,0.9085,-0.28423,388,-0.55451,0.072402,0.82902,367.4
    77236 
    77237 > view matrix models
    77238 > #98,0.72563,0.66601,0.17291,453.53,-0.61766,0.74121,-0.26288,483.34,-0.30324,0.083957,0.94921,285.18
    77239 
    77240 > ui mousemode right "translate selected models"
    77241 
    77242 > view matrix models
    77243 > #98,0.72563,0.66601,0.17291,436.66,-0.61766,0.74121,-0.26288,498.09,-0.30324,0.083957,0.94921,281.71
    77244 
    77245 > ui mousemode right "rotate selected models"
    77246 
    77247 > view matrix models
    77248 > #98,0.93121,0.34943,-0.10363,539.57,-0.36429,0.90125,-0.2346,403.49,0.011419,0.25621,0.96655,174.89
    77249 
    77250 > ui mousemode right "translate selected models"
    77251 
    77252 > view matrix models
    77253 > #98,0.93121,0.34943,-0.10363,549.55,-0.36429,0.90125,-0.2346,419.89,0.011419,0.25621,0.96655,195.07
    77254 
    77255 > view matrix models
    77256 > #98,0.93121,0.34943,-0.10363,540.04,-0.36429,0.90125,-0.2346,424.51,0.011419,0.25621,0.96655,196.08
    77257 
    77258 > fitmap #98 inMap #94
    77259 
    77260 Fit map 1xPflAB_region.mrc in map 1unit_PflABCD.mrc using 76608 points 
    77261 correlation = 0.8837, correlation about mean = 0.8256, overlap = 43.6 
    77262 steps = 436, shift = 9.7, angle = 18.1 degrees 
    77263  
    77264 Position of 1xPflAB_region.mrc (#98) relative to 1unit_PflABCD.mrc (#94)
    77265 coordinates: 
    77266 Matrix rotation and translation 
    77267 0.99999726 0.00117357 0.00202402 -0.58103994 
    77268 -0.00117078 0.99999836 -0.00138321 0.48246498 
    77269 -0.00202564 0.00138083 0.99999699 0.27982521 
    77270 Axis 0.50859335 0.74515350 -0.43136882 
    77271 Axis point 125.65966211 0.00000000 272.99145858 
    77272 Rotation angle (degrees) 0.15569221 
    77273 Shift along axis -0.05671046 
    77274  
    77275 
    77276 > fitmap #98 inMap #94
    77277 
    77278 Fit map 1xPflAB_region.mrc in map 1unit_PflABCD.mrc using 76608 points 
    77279 correlation = 0.8837, correlation about mean = 0.8255, overlap = 43.59 
    77280 steps = 48, shift = 0.0196, angle = 0.00692 degrees 
    77281  
    77282 Position of 1xPflAB_region.mrc (#98) relative to 1unit_PflABCD.mrc (#94)
    77283 coordinates: 
    77284 Matrix rotation and translation 
    77285 0.99999727 0.00115967 0.00202834 -0.57775370 
    77286 -0.00115711 0.99999853 -0.00126335 0.43180142 
    77287 -0.00202980 0.00126100 0.99999714 0.30530944 
    77288 Axis 0.47529436 0.76407878 -0.43620969 
    77289 Axis point 133.30782771 0.00000000 266.77772187 
    77290 Rotation angle (degrees) 0.15215337 
    77291 Shift along axis -0.07785171 
    77292  
    77293 
    77294 > save /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    77295 > includeMaps true
    77296 
    77297 ——— End of log from Tue Sep 9 11:45:50 2025 ———
    77298 
    77299 opened ChimeraX session 
    77300 
    77301 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    77302 > Compositions/Resegment-PflABCD/1xFliL.mrc"
    77303 
    77304 Opened 1xFliL.mrc as #99, grid size 200,200,200, pixel 2.14, shown at level
    77305 0.00238, step 1, values float32 
    77306 
    77307 > select add #99
    77308 
    77309 2 models selected 
    77310 
    77311 > view matrix models #99,1,0,0,412.15,0,1,0,194.7,0,0,1,-151.37
    77312 
    77313 > view matrix models #99,1,0,0,540.78,0,1,0,141.7,0,0,1,232.01
    77314 
    77315 > view matrix models #99,1,0,0,549.52,0,1,0,285.14,0,0,1,213.45
    77316 
    77317 > view matrix models #99,1,0,0,567.09,0,1,0,290.51,0,0,1,228.84
    77318 
    77319 > view matrix models #99,1,0,0,572.06,0,1,0,276.29,0,0,1,237.15
    77320 
    77321 > ui tool show "Fit in Map"
    77322 
    77323 > fitmap #99 inMap #94
    77324 
    77325 Fit map 1xFliL.mrc in map 1unit_PflABCD.mrc using 79950 points 
    77326 correlation = 0.8654, correlation about mean = 0.8142, overlap = 14.02 
    77327 steps = 228, shift = 6.94, angle = 10.3 degrees 
    77328  
    77329 Position of 1xFliL.mrc (#99) relative to 1unit_PflABCD.mrc (#94) coordinates: 
    77330 Matrix rotation and translation 
    77331 0.99999941 0.00067094 -0.00085062 -0.10891124 
    77332 -0.00067114 0.99999975 -0.00022852 0.34103581 
    77333 0.00085047 0.00022909 0.99999961 -0.19995192 
    77334 Axis 0.20663599 -0.76813768 -0.60602481 
    77335 Axis point 351.42628630 0.00000000 -88.61247436 
    77336 Rotation angle (degrees) 0.06344247 
    77337 Shift along axis -0.16329161 
    77338  
    77339 
    77340 > fitmap #99 inMap #94
    77341 
    77342 Fit map 1xFliL.mrc in map 1unit_PflABCD.mrc using 79950 points 
    77343 correlation = 0.8654, correlation about mean = 0.8146, overlap = 14 
    77344 steps = 84, shift = 0.04, angle = 0.0091 degrees 
    77345  
    77346 Position of 1xFliL.mrc (#99) relative to 1unit_PflABCD.mrc (#94) coordinates: 
    77347 Matrix rotation and translation 
    77348 0.99999946 0.00066514 -0.00080258 -0.14033314 
    77349 -0.00066545 0.99999971 -0.00037983 0.40263590 
    77350 0.00080232 0.00038036 0.99999961 -0.20619691 
    77351 Axis 0.34257713 -0.72324753 -0.59962815 
    77352 Axis point 418.11929545 0.00000000 -83.09150205 
    77353 Rotation angle (degrees) 0.06357029 
    77354 Shift along axis -0.21563887 
    77355  
    77356 
    77357 > surface dust #99 size 21.4
    77358 
    77359 > show #!95 models
    77360 
    77361 > hide #!94 models
    77362 
    77363 > show #!93 models
    77364 
    77365 > show #!96 models
    77366 
    77367 > show #!97 models
    77368 
    77369 > show #!92 models
    77370 
    77371 > show #!3 models
    77372 
    77373 > hide #!3 models
    77374 
    77375 > volume gaussian #92 sDev 2
    77376 
    77377 Opened Single_Cage_unit.mrc gaussian as #100, grid size 200,200,200, pixel
    77378 2.14, shown at step 1, values float32 
    77379 
    77380 > close #100
    77381 
    77382 > volume gaussian #92 sDev 2.5
    77383 
    77384 Opened Single_Cage_unit.mrc gaussian as #100, grid size 200,200,200, pixel
    77385 2.14, shown at step 1, values float32 
    77386 
    77387 > surface dust #100 size 58.49
    77388 
    77389 > volume #100 level 0.0004746
    77390 
    77391 > select subtract #99
    77392 
    77393 Nothing selected 
    77394 
    77395 > volume gaussian #93 sDev 2.5
    77396 
    77397 Opened 1xMotBpg-09092025.mrc gaussian as #101, grid size 200,200,200, pixel
    77398 2.14, shown at step 1, values float32 
    77399 
    77400 > surface dust #101 size 58.49
    77401 
    77402 > volume #101 level 0.000475
    77403 
    77404 > surface dust #101 size 70
    77405 
    77406 > surface dust #101 size 60
    77407 
    77408 > hide #!95 models
    77409 
    77410 > hide #!96 models
    77411 
    77412 > hide #!97 models
    77413 
    77414 > hide #!98 models
    77415 
    77416 > hide #!99 models
    77417 
    77418 > hide #!100 models
    77419 
    77420 > ui tool show "Map Eraser"
    77421 
    77422 > close #101
    77423 
    77424 > volume gaussian #93 sDev 2
    77425 
    77426 Opened 1xMotBpg-09092025.mrc gaussian as #101, grid size 200,200,200, pixel
    77427 2.14, shown at step 1, values float32 
    77428 
    77429 > volume erase #101 center 829.76,424.5,513.44 radius 61.846 outside true
    77430 
    77431 > volume erase #101 center 808.45,419.45,496.48 radius 61.846 outside true
    77432 
    77433 > volume erase #101 center 728.23,397.72,499.08 radius 61.846
    77434 
    77435 > volume erase #101 center 764.6,385.97,450.86 radius 61.846
    77436 
    77437 > volume erase #101 center 841.25,386.46,417.05 radius 61.846
    77438 
    77439 > volume erase #101 center 873.63,489.27,496.79 radius 61.846
    77440 
    77441 > close #100
    77442 
    77443 > hide #!101 models
    77444 
    77445 > volume gaussian #92 sDev 2
    77446 
    77447 Opened Single_Cage_unit.mrc gaussian as #100, grid size 200,200,200, pixel
    77448 2.14, shown at step 1, values float32 
    77449 
    77450 > volume erase #100 center 895.5,406.58,415.67 radius 139.1 outside true
    77451 
    77452 > volume erase #100 center 968.62,589.51,395.09 radius 139.1
    77453 
    77454 > volume erase #100 center 772.1,254.71,380.84 radius 139.1
    77455 
    77456 > volume erase #100 center 1062.1,403.04,504.48 radius 139.1
    77457 
    77458 > volume erase #100 center 1010.4,257.36,382.45 radius 139.1
    77459 
    77460 > volume erase #100 center 1041.3,320.67,445.97 radius 139.1
    77461 
    77462 > volume erase #100 center 710.6,460.67,350.75 radius 139.1
    77463 
    77464 > volume erase #100 center 866.66,228.8,548.32 radius 139.1
    77465 
    77466 > volume #100 level 0.0005759
    77467 
    77468 > surface dust #100 size 70
    77469 
    77470 > show #!101 models
    77471 
    77472 > volume gaussian #95 sDev 2
    77473 
    77474 Opened 1xPflD.mrc gaussian as #103, grid size 200,200,200, pixel 2.14, shown
    77475 at step 1, values float32 
    77476 
    77477 > hide #!100 models
    77478 
    77479 > hide #!101 models
    77480 
    77481 > volume erase #103 center 871.21,481.94,542.43 radius 46.652 outside true
    77482 
    77483 > volume erase #103 center 908.86,413.45,538.4 radius 46.652
    77484 
    77485 > volume gaussian #96 sDev 2
    77486 
    77487 Opened 1xPflC.mrc gaussian as #104, grid size 200,200,200, pixel 2.14, shown
    77488 at step 1, values float32 
    77489 
    77490 > hide #!103 models
    77491 
    77492 > show #!103 models
    77493 
    77494 > hide #!103 models
    77495 
    77496 > volume erase #104 center 785.1,444.43,565.63 radius 173.13 outside true
    77497 
    77498 > volume erase #104 center 723.77,506.03,771.26 radius 173.13
    77499 
    77500 > volume erase #104 center 679.19,265.08,669.9 radius 173.13
    77501 
    77502 > volume erase #104 center 712.3,653.46,453.51 radius 173.13
    77503 
    77504 > volume erase #104 center 933.46,435.63,382.11 radius 173.13
    77505 
    77506 > volume erase #104 center 686.53,436.27,325.5 radius 173.13
    77507 
    77508 > volume erase #104 center 919.63,250.56,604.23 radius 173.13
    77509 
    77510 > volume erase #104 center 898.54,244.83,603.89 radius 173.13
    77511 
    77512 [Repeated 1 time(s)]
    77513 
    77514 > volume erase #104 center 680.09,206.07,598.64 radius 173.13
    77515 
    77516 > volume erase #104 center 895.71,248.28,603.49 radius 173.13
    77517 
    77518 > volume erase #104 center 681.24,655.87,555.01 radius 173.13
    77519 
    77520 > volume erase #104 center 820.74,703.21,533.09 radius 173.13
    77521 
    77522 > volume erase #104 center 870.76,722.05,585.21 radius 173.13
    77523 
    77524 > volume erase #104 center 959.91,689.99,485.26 radius 173.13
    77525 
    77526 > volume erase #104 center 535.57,456.82,733.8 radius 173.13
    77527 
    77528 > volume erase #104 center 742.24,477.25,675.98 radius 91.378
    77529 
    77530 > volume erase #104 center 707.14,403.77,596.19 radius 33.17
    77531 
    77532 > volume erase #104 center 614.96,420.41,513.49 radius 33.17
    77533 
    77534 > volume erase #104 center 736.63,433.42,613.02 radius 33.17
    77535 
    77536 > volume erase #104 center 834.45,555.87,590.53 radius 33.17
    77537 
    77538 > show #!103 models
    77539 
    77540 > show #!98 models
    77541 
    77542 > hide #!98 models
    77543 
    77544 > volume gaussian #98 sDev 2
    77545 
    77546 Opened 1xPflAB_region.mrc gaussian as #105, grid size 200,200,200, pixel 2.14,
    77547 shown at step 1, values float32 
    77548 
    77549 > hide #!103 models
    77550 
    77551 > hide #!104 models
    77552 
    77553 > close #105
    77554 
    77555 > volume gaussian #98 sDev 1.5
    77556 
    77557 Opened 1xPflAB_region.mrc gaussian as #105, grid size 200,200,200, pixel 2.14,
    77558 shown at step 1, values float32 
    77559 
    77560 > volume erase #105 center 781.9,485.71,512.43 radius 147.45 outside true
    77561 
    77562 > volume erase #105 center 758.02,633.26,590.41 radius 147.45
    77563 
    77564 > volume erase #105 center 695.55,312.58,428.26 radius 147.45
    77565 
    77566 > volume erase #105 center 950.23,321.56,442.66 radius 147.45
    77567 
    77568 > volume erase #105 center 793.41,400.92,664.64 radius 147.45
    77569 
    77570 > volume erase #105 center 735.08,553.48,317.21 radius 147.45
    77571 
    77572 > volume erase #105 center 807.62,404.1,298.54 radius 147.45
    77573 
    77574 > volume #105 level 0.0006923
    77575 
    77576 > volume erase #105 center 817.59,488.09,548.79 radius 45.796
    77577 
    77578 > close #105
    77579 
    77580 > volume gaussian #98 sDev 1.5
    77581 
    77582 Opened 1xPflAB_region.mrc gaussian as #105, grid size 200,200,200, pixel 2.14,
    77583 shown at step 1, values float32 
    77584 
    77585 > volume erase #105 center 781.31,461.6,497.58 radius 148.73 outside true
    77586 
    77587 > volume erase #105 center 791.02,318.44,601.06 radius 148.73
    77588 
    77589 > volume erase #105 center 745.49,326.98,361.1 radius 148.73
    77590 
    77591 > volume erase #105 center 759.36,497.86,295.72 radius 148.73
    77592 
    77593 > volume erase #105 center 789.13,543.88,682.73 radius 148.73
    77594 
    77595 > volume erase #105 center 733.56,666.85,457.34 radius 148.73
    77596 
    77597 > volume erase #105 center 961.03,325.33,517.64 radius 148.73
    77598 
    77599 > volume #105 level 0.0009229
    77600 
    77601 > hide #102 models
    77602 
    77603 > show #!99 models
    77604 
    77605 > volume gaussian #99 sDev 2
    77606 
    77607 Opened 1xFliL.mrc gaussian as #106, grid size 200,200,200, pixel 2.14, shown
    77608 at step 1, values float32 
    77609 
    77610 > hide #!105 models
    77611 
    77612 > show #102 models
    77613 
    77614 > volume erase #106 center 813.72,389.77,462.24 radius 81.32 outside true
    77615 
    77616 > volume erase #106 center 822.6,364.5,336.25 radius 81.32
    77617 
    77618 > volume erase #106 center 758.13,418.61,344.41 radius 81.32
    77619 
    77620 > volume erase #106 center 697.35,350.59,412.64 radius 81.32
    77621 
    77622 > volume erase #106 center 764.38,274.6,414.23 radius 81.32
    77623 
    77624 > volume erase #106 center 919.39,299.8,428.71 radius 81.32
    77625 
    77626 > volume erase #106 center 690.31,438.35,408.57 radius 81.32
    77627 
    77628 > volume erase #106 center 802.55,400.1,569.96 radius 81.32
    77629 
    77630 > volume erase #106 center 840,286.64,550.41 radius 81.32
    77631 
    77632 > volume erase #106 center 864.62,409.05,368.26 radius 50.076
    77633 
    77634 > volume erase #106 center 870.87,331.2,485.64 radius 50.076
    77635 
    77636 > hide #102 models
    77637 
    77638 > show #!101 models
    77639 
    77640 > show #!103 models
    77641 
    77642 > show #!104 models
    77643 
    77644 > show #!105 models
    77645 
    77646 > show #!100 models
    77647 
    77648 > show #!3 models
    77649 
    77650 > view orient
    77651 
    77652 > save /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    77653 > includeMaps true
    77654 
    77655 > turn z 21.176471 models #100 center #3
    77656 
    77657 > volume copy #100
    77658 
    77659 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    77660 pixel 2.14, shown at step 1, values float32 
    77661 
    77662 > volume #100 show
    77663 
    77664 > turn z 21.176471 models #100 center #3
    77665 
    77666 > volume copy #100
    77667 
    77668 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    77669 pixel 2.14, shown at step 1, values float32 
    77670 
    77671 > volume #100 show
    77672 
    77673 > turn z 21.176471 models #100 center #3
    77674 
    77675 > volume copy #100
    77676 
    77677 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    77678 pixel 2.14, shown at step 1, values float32 
    77679 
    77680 > volume #100 show
    77681 
    77682 > turn z 21.176471 models #100 center #3
    77683 
    77684 > volume copy #100
    77685 
    77686 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    77687 pixel 2.14, shown at step 1, values float32 
    77688 
    77689 > volume #100 show
    77690 
    77691 > turn z 21.176471 models #100 center #3
    77692 
    77693 > volume copy #100
    77694 
    77695 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    77696 pixel 2.14, shown at step 1, values float32 
    77697 
    77698 > volume #100 show
    77699 
    77700 > turn z 21.176471 models #100 center #3
    77701 
    77702 > volume copy #100
    77703 
    77704 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    77705 pixel 2.14, shown at step 1, values float32 
    77706 
    77707 > volume #100 show
    77708 
    77709 > turn z 21.176471 models #100 center #3
    77710 
    77711 > volume copy #100
    77712 
    77713 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    77714 pixel 2.14, shown at step 1, values float32 
    77715 
    77716 > volume #100 show
    77717 
    77718 > turn z 21.176471 models #100 center #3
    77719 
    77720 > volume copy #100
    77721 
    77722 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    77723 pixel 2.14, shown at step 1, values float32 
    77724 
    77725 > volume #100 show
    77726 
    77727 > turn z 21.176471 models #100 center #3
    77728 
    77729 > volume copy #100
    77730 
    77731 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    77732 pixel 2.14, shown at step 1, values float32 
    77733 
    77734 > volume #100 show
    77735 
    77736 > turn z 21.176471 models #100 center #3
    77737 
    77738 > volume copy #100
    77739 
    77740 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    77741 pixel 2.14, shown at step 1, values float32 
    77742 
    77743 > volume #100 show
    77744 
    77745 > turn z 21.176471 models #100 center #3
    77746 
    77747 > volume copy #100
    77748 
    77749 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    77750 pixel 2.14, shown at step 1, values float32 
    77751 
    77752 > volume #100 show
    77753 
    77754 > turn z 21.176471 models #100 center #3
    77755 
    77756 > volume copy #100
    77757 
    77758 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    77759 pixel 2.14, shown at step 1, values float32 
    77760 
    77761 > volume #100 show
    77762 
    77763 > turn z 21.176471 models #100 center #3
    77764 
    77765 > volume copy #100
    77766 
    77767 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    77768 pixel 2.14, shown at step 1, values float32 
    77769 
    77770 > volume #100 show
    77771 
    77772 > turn z 21.176471 models #100 center #3
    77773 
    77774 > volume copy #100
    77775 
    77776 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    77777 pixel 2.14, shown at step 1, values float32 
    77778 
    77779 > volume #100 show
    77780 
    77781 > turn z 21.176471 models #100 center #3
    77782 
    77783 > volume copy #100
    77784 
    77785 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    77786 pixel 2.14, shown at step 1, values float32 
    77787 
    77788 > volume #100 show
    77789 
    77790 > turn z 21.176471 models #100 center #3
    77791 
    77792 > volume copy #100
    77793 
    77794 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    77795 pixel 2.14, shown at step 1, values float32 
    77796 
    77797 > volume #100 show
    77798 
    77799 > turn z 21.176471 models #100 center #3
    77800 
    77801 > volume copy #100
    77802 
    77803 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    77804 pixel 2.14, shown at step 1, values float32 
    77805 
    77806 > volume #100 show
    77807 
    77808 > turn z 21.176471 models #101 center #3
    77809 
    77810 > volume copy #101
    77811 
    77812 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    77813 pixel 2.14, shown at step 1, values float32 
    77814 
    77815 > volume #101 show
    77816 
    77817 > turn z 21.176471 models #101 center #3
    77818 
    77819 > volume copy #101
    77820 
    77821 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    77822 pixel 2.14, shown at step 1, values float32 
    77823 
    77824 > volume #101 show
    77825 
    77826 > turn z 21.176471 models #101 center #3
    77827 
    77828 > volume copy #101
    77829 
    77830 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    77831 pixel 2.14, shown at step 1, values float32 
    77832 
    77833 > volume #101 show
    77834 
    77835 > turn z 21.176471 models #101 center #3
    77836 
    77837 > volume copy #101
    77838 
    77839 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    77840 pixel 2.14, shown at step 1, values float32 
    77841 
    77842 > volume #101 show
    77843 
    77844 > turn z 21.176471 models #101 center #3
    77845 
    77846 > volume copy #101
    77847 
    77848 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    77849 pixel 2.14, shown at step 1, values float32 
    77850 
    77851 > volume #101 show
    77852 
    77853 > turn z 21.176471 models #101 center #3
    77854 
    77855 > volume copy #101
    77856 
    77857 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    77858 pixel 2.14, shown at step 1, values float32 
    77859 
    77860 > volume #101 show
    77861 
    77862 > turn z 21.176471 models #101 center #3
    77863 
    77864 > volume copy #101
    77865 
    77866 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    77867 pixel 2.14, shown at step 1, values float32 
    77868 
    77869 > volume #101 show
    77870 
    77871 > turn z 21.176471 models #101 center #3
    77872 
    77873 > volume copy #101
    77874 
    77875 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    77876 pixel 2.14, shown at step 1, values float32 
    77877 
    77878 > volume #101 show
    77879 
    77880 > turn z 21.176471 models #101 center #3
    77881 
    77882 > volume copy #101
    77883 
    77884 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    77885 pixel 2.14, shown at step 1, values float32 
    77886 
    77887 > volume #101 show
    77888 
    77889 > turn z 21.176471 models #101 center #3
    77890 
    77891 > volume copy #101
    77892 
    77893 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    77894 pixel 2.14, shown at step 1, values float32 
    77895 
    77896 > volume #101 show
    77897 
    77898 > turn z 21.176471 models #101 center #3
    77899 
    77900 > volume copy #101
    77901 
    77902 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    77903 pixel 2.14, shown at step 1, values float32 
    77904 
    77905 > volume #101 show
    77906 
    77907 > turn z 21.176471 models #101 center #3
    77908 
    77909 > volume copy #101
    77910 
    77911 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    77912 pixel 2.14, shown at step 1, values float32 
    77913 
    77914 > volume #101 show
    77915 
    77916 > turn z 21.176471 models #101 center #3
    77917 
    77918 > volume copy #101
    77919 
    77920 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    77921 pixel 2.14, shown at step 1, values float32 
    77922 
    77923 > volume #101 show
    77924 
    77925 > turn z 21.176471 models #101 center #3
    77926 
    77927 > volume copy #101
    77928 
    77929 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    77930 pixel 2.14, shown at step 1, values float32 
    77931 
    77932 > volume #101 show
    77933 
    77934 > turn z 21.176471 models #101 center #3
    77935 
    77936 > volume copy #101
    77937 
    77938 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    77939 pixel 2.14, shown at step 1, values float32 
    77940 
    77941 > volume #101 show
    77942 
    77943 > turn z 21.176471 models #101 center #3
    77944 
    77945 > volume copy #101
    77946 
    77947 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    77948 pixel 2.14, shown at step 1, values float32 
    77949 
    77950 > volume #101 show
    77951 
    77952 > turn z 21.176471 models #101 center #3
    77953 
    77954 > volume copy #101
    77955 
    77956 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    77957 pixel 2.14, shown at step 1, values float32 
    77958 
    77959 > volume #101 show
    77960 
    77961 > turn z 21.176471 models #103 center #3
    77962 
    77963 > volume copy #103
    77964 
    77965 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    77966 shown at step 1, values float32 
    77967 
    77968 > volume #103 show
    77969 
    77970 > turn z 21.176471 models #103 center #3
    77971 
    77972 > volume copy #103
    77973 
    77974 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    77975 shown at step 1, values float32 
    77976 
    77977 > volume #103 show
    77978 
    77979 > turn z 21.176471 models #103 center #3
    77980 
    77981 > volume copy #103
    77982 
    77983 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    77984 shown at step 1, values float32 
    77985 
    77986 > volume #103 show
    77987 
    77988 > turn z 21.176471 models #103 center #3
    77989 
    77990 > volume copy #103
    77991 
    77992 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    77993 shown at step 1, values float32 
    77994 
    77995 > volume #103 show
    77996 
    77997 > turn z 21.176471 models #103 center #3
    77998 
    77999 > volume copy #103
    78000 
    78001 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    78002 shown at step 1, values float32 
    78003 
    78004 > volume #103 show
    78005 
    78006 > turn z 21.176471 models #103 center #3
    78007 
    78008 > volume copy #103
    78009 
    78010 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    78011 shown at step 1, values float32 
    78012 
    78013 > volume #103 show
    78014 
    78015 > turn z 21.176471 models #103 center #3
    78016 
    78017 > volume copy #103
    78018 
    78019 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    78020 shown at step 1, values float32 
    78021 
    78022 > volume #103 show
    78023 
    78024 > turn z 21.176471 models #103 center #3
    78025 
    78026 > volume copy #103
    78027 
    78028 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    78029 shown at step 1, values float32 
    78030 
    78031 > volume #103 show
    78032 
    78033 > turn z 21.176471 models #103 center #3
    78034 
    78035 > volume copy #103
    78036 
    78037 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    78038 shown at step 1, values float32 
    78039 
    78040 > volume #103 show
    78041 
    78042 > turn z 21.176471 models #103 center #3
    78043 
    78044 > volume copy #103
    78045 
    78046 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    78047 shown at step 1, values float32 
    78048 
    78049 > volume #103 show
    78050 
    78051 > turn z 21.176471 models #103 center #3
    78052 
    78053 > volume copy #103
    78054 
    78055 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    78056 shown at step 1, values float32 
    78057 
    78058 > volume #103 show
    78059 
    78060 > turn z 21.176471 models #103 center #3
    78061 
    78062 > volume copy #103
    78063 
    78064 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    78065 shown at step 1, values float32 
    78066 
    78067 > volume #103 show
    78068 
    78069 > turn z 21.176471 models #103 center #3
    78070 
    78071 > volume copy #103
    78072 
    78073 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    78074 shown at step 1, values float32 
    78075 
    78076 > volume #103 show
    78077 
    78078 > turn z 21.176471 models #103 center #3
    78079 
    78080 > volume copy #103
    78081 
    78082 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    78083 shown at step 1, values float32 
    78084 
    78085 > volume #103 show
    78086 
    78087 > turn z 21.176471 models #103 center #3
    78088 
    78089 > volume copy #103
    78090 
    78091 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    78092 shown at step 1, values float32 
    78093 
    78094 > volume #103 show
    78095 
    78096 > turn z 21.176471 models #103 center #3
    78097 
    78098 > volume copy #103
    78099 
    78100 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    78101 shown at step 1, values float32 
    78102 
    78103 > volume #103 show
    78104 
    78105 > turn z 21.176471 models #103 center #3
    78106 
    78107 > volume copy #103
    78108 
    78109 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    78110 shown at step 1, values float32 
    78111 
    78112 > volume #103 show
    78113 
    78114 > turn z 21.176471 models #104 center #3
    78115 
    78116 > volume copy #104
    78117 
    78118 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    78119 shown at step 1, values float32 
    78120 
    78121 > volume #104 show
    78122 
    78123 > turn z 21.176471 models #104 center #3
    78124 
    78125 > volume copy #104
    78126 
    78127 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    78128 shown at step 1, values float32 
    78129 
    78130 > volume #104 show
    78131 
    78132 > turn z 21.176471 models #104 center #3
    78133 
    78134 > volume copy #104
    78135 
    78136 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    78137 shown at step 1, values float32 
    78138 
    78139 > volume #104 show
    78140 
    78141 > turn z 21.176471 models #104 center #3
    78142 
    78143 > volume copy #104
    78144 
    78145 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    78146 shown at step 1, values float32 
    78147 
    78148 > volume #104 show
    78149 
    78150 > turn z 21.176471 models #104 center #3
    78151 
    78152 > volume copy #104
    78153 
    78154 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    78155 shown at step 1, values float32 
    78156 
    78157 > volume #104 show
    78158 
    78159 > turn z 21.176471 models #104 center #3
    78160 
    78161 > volume copy #104
    78162 
    78163 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    78164 shown at step 1, values float32 
    78165 
    78166 > volume #104 show
    78167 
    78168 > turn z 21.176471 models #104 center #3
    78169 
    78170 > volume copy #104
    78171 
    78172 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    78173 shown at step 1, values float32 
    78174 
    78175 > volume #104 show
    78176 
    78177 > turn z 21.176471 models #104 center #3
    78178 
    78179 > volume copy #104
    78180 
    78181 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    78182 shown at step 1, values float32 
    78183 
    78184 > volume #104 show
    78185 
    78186 > turn z 21.176471 models #104 center #3
    78187 
    78188 > volume copy #104
    78189 
    78190 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    78191 shown at step 1, values float32 
    78192 
    78193 > volume #104 show
    78194 
    78195 > turn z 21.176471 models #104 center #3
    78196 
    78197 > volume copy #104
    78198 
    78199 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    78200 shown at step 1, values float32 
    78201 
    78202 > volume #104 show
    78203 
    78204 > turn z 21.176471 models #104 center #3
    78205 
    78206 > volume copy #104
    78207 
    78208 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    78209 shown at step 1, values float32 
    78210 
    78211 > volume #104 show
    78212 
    78213 > turn z 21.176471 models #104 center #3
    78214 
    78215 > volume copy #104
    78216 
    78217 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    78218 shown at step 1, values float32 
    78219 
    78220 > volume #104 show
    78221 
    78222 > turn z 21.176471 models #104 center #3
    78223 
    78224 > volume copy #104
    78225 
    78226 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    78227 shown at step 1, values float32 
    78228 
    78229 > volume #104 show
    78230 
    78231 > turn z 21.176471 models #104 center #3
    78232 
    78233 > volume copy #104
    78234 
    78235 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    78236 shown at step 1, values float32 
    78237 
    78238 > volume #104 show
    78239 
    78240 > turn z 21.176471 models #104 center #3
    78241 
    78242 > volume copy #104
    78243 
    78244 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    78245 shown at step 1, values float32 
    78246 
    78247 > volume #104 show
    78248 
    78249 > turn z 21.176471 models #104 center #3
    78250 
    78251 > volume copy #104
    78252 
    78253 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    78254 shown at step 1, values float32 
    78255 
    78256 > volume #104 show
    78257 
    78258 > turn z 21.176471 models #104 center #3
    78259 
    78260 > volume copy #104
    78261 
    78262 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    78263 shown at step 1, values float32 
    78264 
    78265 > volume #104 show
    78266 
    78267 > turn z 21.176471 models #106 center #3
    78268 
    78269 > volume copy #106
    78270 
    78271 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    78272 shown at step 1, values float32 
    78273 
    78274 > volume #106 show
    78275 
    78276 > turn z 21.176471 models #106 center #3
    78277 
    78278 > volume copy #106
    78279 
    78280 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    78281 shown at step 1, values float32 
    78282 
    78283 > volume #106 show
    78284 
    78285 > turn z 21.176471 models #106 center #3
    78286 
    78287 > volume copy #106
    78288 
    78289 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    78290 shown at step 1, values float32 
    78291 
    78292 > volume #106 show
    78293 
    78294 > turn z 21.176471 models #106 center #3
    78295 
    78296 > volume copy #106
    78297 
    78298 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    78299 shown at step 1, values float32 
    78300 
    78301 > volume #106 show
    78302 
    78303 > turn z 21.176471 models #106 center #3
    78304 
    78305 > volume copy #106
    78306 
    78307 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    78308 shown at step 1, values float32 
    78309 
    78310 > volume #106 show
    78311 
    78312 > turn z 21.176471 models #106 center #3
    78313 
    78314 > volume copy #106
    78315 
    78316 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    78317 shown at step 1, values float32 
    78318 
    78319 > volume #106 show
    78320 
    78321 > turn z 21.176471 models #106 center #3
    78322 
    78323 > volume copy #106
    78324 
    78325 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    78326 shown at step 1, values float32 
    78327 
    78328 > volume #106 show
    78329 
    78330 > turn z 21.176471 models #106 center #3
    78331 
    78332 > volume copy #106
    78333 
    78334 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    78335 shown at step 1, values float32 
    78336 
    78337 > volume #106 show
    78338 
    78339 > turn z 21.176471 models #106 center #3
    78340 
    78341 > volume copy #106
    78342 
    78343 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    78344 shown at step 1, values float32 
    78345 
    78346 > volume #106 show
    78347 
    78348 > turn z 21.176471 models #106 center #3
    78349 
    78350 > volume copy #106
    78351 
    78352 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    78353 shown at step 1, values float32 
    78354 
    78355 > volume #106 show
    78356 
    78357 > turn z 21.176471 models #106 center #3
    78358 
    78359 > volume copy #106
    78360 
    78361 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    78362 shown at step 1, values float32 
    78363 
    78364 > volume #106 show
    78365 
    78366 > turn z 21.176471 models #106 center #3
    78367 
    78368 > volume copy #106
    78369 
    78370 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    78371 shown at step 1, values float32 
    78372 
    78373 > volume #106 show
    78374 
    78375 > turn z 21.176471 models #106 center #3
    78376 
    78377 > volume copy #106
    78378 
    78379 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    78380 shown at step 1, values float32 
    78381 
    78382 > volume #106 show
    78383 
    78384 > turn z 21.176471 models #106 center #3
    78385 
    78386 > volume copy #106
    78387 
    78388 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    78389 shown at step 1, values float32 
    78390 
    78391 > volume #106 show
    78392 
    78393 > turn z 21.176471 models #106 center #3
    78394 
    78395 > volume copy #106
    78396 
    78397 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    78398 shown at step 1, values float32 
    78399 
    78400 > volume #106 show
    78401 
    78402 > turn z 21.176471 models #106 center #3
    78403 
    78404 > volume copy #106
    78405 
    78406 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    78407 shown at step 1, values float32 
    78408 
    78409 > volume #106 show
    78410 
    78411 > turn z 21.176471 models #106 center #3
    78412 
    78413 > volume copy #106
    78414 
    78415 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    78416 shown at step 1, values float32 
    78417 
    78418 > volume #106 show
    78419 
    78420 > show #!79 models
    78421 
    78422 > hide #!79 models
    78423 
    78424 > show #!79 models
    78425 
    78426 > volume #79 level 0.1628
    78427 
    78428 > volume #79 level 0.1593
    78429 
    78430 > surface dust #3 size 43
    78431 
    78432 > surface dust #79 size 43
    78433 
    78434 > surface dust #101 size 21.4
    78435 
    78436 > surface dust #100 size 21.4
    78437 
    78438 > surface dust #103 size 21.4
    78439 
    78440 > surface dust #104 size 21.4
    78441 
    78442 > surface dust #105 size 21.4
    78443 
    78444 > surface dust #106 size 21.4
    78445 
    78446 > surface dust #107 size 21.4
    78447 
    78448 > surface dust #108 size 21.4
    78449 
    78450 > surface dust #109 size 21.4
    78451 
    78452 > surface dust #110 size 21.4
    78453 
    78454 > surface dust #111 size 21.4
    78455 
    78456 > surface dust #112 size 21.4
    78457 
    78458 > surface dust #113 size 21.4
    78459 
    78460 > surface dust #114 size 21.4
    78461 
    78462 > surface dust #115 size 21.4
    78463 
    78464 > surface dust #116 size 21.4
    78465 
    78466 > surface dust #117 size 21.4
    78467 
    78468 > surface dust #118 size 21.4
    78469 
    78470 > surface dust #119 size 21.4
    78471 
    78472 > surface dust #120 size 21.4
    78473 
    78474 > surface dust #121 size 21.4
    78475 
    78476 > surface dust #122 size 21.4
    78477 
    78478 > surface dust #123 size 21.4
    78479 
    78480 > surface dust #124 size 21.4
    78481 
    78482 > surface dust #125 size 21.4
    78483 
    78484 > surface dust #126 size 21.4
    78485 
    78486 > surface dust #127 size 21.4
    78487 
    78488 > surface dust #128 size 21.4
    78489 
    78490 > surface dust #129 size 21.4
    78491 
    78492 > surface dust #130 size 21.4
    78493 
    78494 > surface dust #131 size 21.4
    78495 
    78496 > surface dust #132 size 21.4
    78497 
    78498 > surface dust #133 size 21.4
    78499 
    78500 > surface dust #134 size 21.4
    78501 
    78502 > surface dust #135 size 21.4
    78503 
    78504 > surface dust #136 size 21.4
    78505 
    78506 > surface dust #137 size 21.4
    78507 
    78508 > surface dust #138 size 21.4
    78509 
    78510 > surface dust #139 size 21.4
    78511 
    78512 > surface dust #140 size 21.4
    78513 
    78514 > surface dust #141 size 21.4
    78515 
    78516 > surface dust #142 size 21.4
    78517 
    78518 > surface dust #143 size 21.4
    78519 
    78520 > surface dust #144 size 21.4
    78521 
    78522 > surface dust #145 size 21.4
    78523 
    78524 > surface dust #146 size 21.4
    78525 
    78526 > surface dust #147 size 21.4
    78527 
    78528 > surface dust #148 size 21.4
    78529 
    78530 > surface dust #149 size 21.4
    78531 
    78532 > surface dust #150 size 21.4
    78533 
    78534 > surface dust #151 size 21.4
    78535 
    78536 > surface dust #152 size 21.4
    78537 
    78538 > surface dust #153 size 21.4
    78539 
    78540 > surface dust #154 size 21.4
    78541 
    78542 > surface dust #155 size 21.4
    78543 
    78544 > surface dust #156 size 21.4
    78545 
    78546 > surface dust #157 size 21.4
    78547 
    78548 > surface dust #158 size 21.4
    78549 
    78550 > surface dust #159 size 21.4
    78551 
    78552 > surface dust #160 size 21.4
    78553 
    78554 > surface dust #161 size 21.4
    78555 
    78556 > surface dust #162 size 21.4
    78557 
    78558 > surface dust #163 size 21.4
    78559 
    78560 > surface dust #164 size 21.4
    78561 
    78562 > surface dust #165 size 21.4
    78563 
    78564 > surface dust #166 size 21.4
    78565 
    78566 > surface dust #167 size 21.4
    78567 
    78568 > surface dust #168 size 21.4
    78569 
    78570 > surface dust #169 size 21.4
    78571 
    78572 > surface dust #170 size 21.4
    78573 
    78574 > surface dust #171 size 21.4
    78575 
    78576 > surface dust #172 size 21.4
    78577 
    78578 > surface dust #173 size 21.4
    78579 
    78580 > surface dust #174 size 21.4
    78581 
    78582 > surface dust #175 size 21.4
    78583 
    78584 > surface dust #176 size 21.4
    78585 
    78586 > surface dust #177 size 21.4
    78587 
    78588 > surface dust #178 size 21.4
    78589 
    78590 > surface dust #179 size 21.4
    78591 
    78592 > surface dust #180 size 21.4
    78593 
    78594 > surface dust #181 size 21.4
    78595 
    78596 > surface dust #182 size 21.4
    78597 
    78598 > surface dust #183 size 21.4
    78599 
    78600 > surface dust #184 size 21.4
    78601 
    78602 > surface dust #185 size 21.4
    78603 
    78604 > surface dust #186 size 21.4
    78605 
    78606 > surface dust #187 size 21.4
    78607 
    78608 > surface dust #188 size 21.4
    78609 
    78610 > surface dust #189 size 21.4
    78611 
    78612 > surface dust #190 size 21.4
    78613 
    78614 > surface dust #191 size 21.4
    78615 
    78616 > show #!90 models
    78617 
    78618 > save /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    78619 > includeMaps true
    78620 
    78621 > show #!97 models
    78622 
    78623 > hide #!97 models
    78624 
    78625 > hide #!90 models
    78626 
    78627 > hide #!100-191 models
    78628 
    78629 > hide #!3 models
    78630 
    78631 > hide #!79 models
    78632 
    78633 > show #!97 models
    78634 
    78635 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    78636 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/PDB/From_PDB/6ykm-
    78637 > MotA-only.pdb"
    78638 
    78639 Chain information for 6ykm-MotA-only.pdb #192 
    78640 --- 
    78641 Chain | Description 
    78642 A B C D E | No description available 
    78643  
    78644 
    78645 > select add #192
    78646 
    78647 9770 atoms, 9945 bonds, 1275 residues, 1 model selected 
    78648 
    78649 > hide sel atoms
    78650 
    78651 > show sel cartoons
    78652 
    78653 > color #97 #737259ff models
    78654 
    78655 > color #97 #737259a6 models
    78656 
    78657 > ui mousemode right "translate selected models"
    78658 
    78659 > view matrix models #192,1,0,0,310.87,0,1,0,-71.092,0,0,1,-263.17
    78660 
    78661 > view matrix models #192,1,0,0,391.76,0,1,0,95.092,0,0,1,29.173
    78662 
    78663 > view matrix models #192,1,0,0,519.88,0,1,0,106.67,0,0,1,-21.308
    78664 
    78665 > view matrix models #192,1,0,0,516.85,0,1,0,73.428,0,0,1,-24.051
    78666 
    78667 > view matrix models #192,1,0,0,517.91,0,1,0,71.221,0,0,1,-27.42
    78668 
    78669 > ui tool show "Fit in Map"
    78670 
    78671 > fitmap #192 inMap #97
    78672 
    78673 Fit molecule 6ykm-MotA-only.pdb (#192) to map Single-MotA-ring.mrc (#97) using
    78674 9770 atoms 
    78675 average map value = 0.01292, steps = 92 
    78676 shifted from previous position = 2.78 
    78677 rotated from previous position = 16.5 degrees 
    78678 atoms outside contour = 2537, contour level = 0.0025221 
    78679  
    78680 Position of 6ykm-MotA-only.pdb (#192) relative to Single-MotA-ring.mrc (#97)
    78681 coordinates: 
    78682 Matrix rotation and translation 
    78683 0.93131251 -0.36421870 -0.00132323 101.07630370 
    78684 0.35563891 0.90857781 0.21910574 -362.60912716 
    78685 -0.07860015 -0.20452651 0.97570022 -161.37208721 
    78686 Axis -0.50502926 0.09212496 0.85817157 
    78687 Axis point 909.62525032 -203.15588010 0.00000000 
    78688 Rotation angle (degrees) 24.79756955 
    78689 Shift along axis -222.93678080 
    78690  
    78691 
    78692 > fitmap #192 inMap #97
    78693 
    78694 Fit molecule 6ykm-MotA-only.pdb (#192) to map Single-MotA-ring.mrc (#97) using
    78695 9770 atoms 
    78696 average map value = 0.01292, steps = 48 
    78697 shifted from previous position = 0.00729 
    78698 rotated from previous position = 0.0262 degrees 
    78699 atoms outside contour = 2539, contour level = 0.0025221 
    78700  
    78701 Position of 6ykm-MotA-only.pdb (#192) relative to Single-MotA-ring.mrc (#97)
    78702 coordinates: 
    78703 Matrix rotation and translation 
    78704 0.93120884 -0.36448253 -0.00160501 101.30546334 
    78705 0.35597140 0.90850003 0.21888822 -362.59823396 
    78706 -0.07832278 -0.20440199 0.97574862 -161.50864836 
    78707 Axis -0.50444835 0.09142700 0.85858777 
    78708 Axis point 909.38164504 -202.21982554 0.00000000 
    78709 Rotation angle (degrees) 24.80665576 
    78710 Shift along axis -222.92399207 
    78711  
    78712 
    78713 > fitmap #192 inMap #97
    78714 
    78715 Fit molecule 6ykm-MotA-only.pdb (#192) to map Single-MotA-ring.mrc (#97) using
    78716 9770 atoms 
    78717 average map value = 0.01292, steps = 40 
    78718 shifted from previous position = 0.01 
    78719 rotated from previous position = 0.015 degrees 
    78720 atoms outside contour = 2536, contour level = 0.0025221 
    78721  
    78722 Position of 6ykm-MotA-only.pdb (#192) relative to Single-MotA-ring.mrc (#97)
    78723 coordinates: 
    78724 Matrix rotation and translation 
    78725 0.93129340 -0.36426674 -0.00152769 101.17469277 
    78726 0.35573768 0.90856941 0.21898022 -362.58654619 
    78727 -0.07837920 -0.20447829 0.97572810 -161.46755438 
    78728 Axis -0.50482262 0.09161791 0.85834741 
    78729 Axis point 909.74182257 -202.73730925 0.00000000 
    78730 Rotation angle (degrees) 24.79754405 
    78731 Shift along axis -222.88995165 
    78732  
    78733 
    78734 > mlp sel
    78735 
    78736 Map values for surface "6ykm-MotA-only.pdb_A SES surface": minimum -26.09,
    78737 mean -2.55, maximum 24.94 
    78738 Map values for surface "6ykm-MotA-only.pdb_B SES surface": minimum -27.18,
    78739 mean -2.418, maximum 22.6 
    78740 Map values for surface "6ykm-MotA-only.pdb_C SES surface": minimum -26.36,
    78741 mean -2.366, maximum 24.6 
    78742 Map values for surface "6ykm-MotA-only.pdb_D SES surface": minimum -26.03,
    78743 mean -2.469, maximum 23.72 
    78744 Map values for surface "6ykm-MotA-only.pdb_E SES surface": minimum -26.34,
    78745 mean -2.365, maximum 23.11 
    78746 To also show corresponding color key, enter the above mlp command and add key
    78747 true 
    78748 
    78749 > ui tool show "Map Eraser"
    78750 
    78751 > show #102 models
    78752 
    78753 > view matrix models
    78754 > #192,0.97885,-0.19883,0.048188,384.41,0.18517,0.96116,0.20465,-13.223,-0.087008,-0.1914,0.97765,12.45
    78755 
    78756 > undo
    78757 
    78758 > select clear
    78759 
    78760 > select add #102
    78761 
    78762 1 model selected 
    78763 
    78764 > view matrix models #102,1,0,0,788.35,0,1,0,256.25,0,0,1,288.69
    78765 
    78766 > view matrix models #102,1,0,0,784.54,0,1,0,305.75,0,0,1,416.73
    78767 
    78768 > view matrix models #102,1,0,0,718.1,0,1,0,348.68,0,0,1,409.91
    78769 
    78770 > view matrix models #102,1,0,0,731.08,0,1,0,362.38,0,0,1,395.61
    78771 
    78772 > view matrix models #102,1,0,0,734.14,0,1,0,360.72,0,0,1,396.43
    78773 
    78774 > volume erase #97 center 734.14,360.72,396.43 radius 57.78
    78775 
    78776 > view matrix models #102,1,0,0,759.05,0,1,0,325.9,0,0,1,411.92
    78777 
    78778 > view matrix models #102,1,0,0,747.75,0,1,0,328.06,0,0,1,382.84
    78779 
    78780 > view matrix models #102,1,0,0,757.86,0,1,0,330.48,0,0,1,382.37
    78781 
    78782 > volume erase #97 center 757.86,330.48,382.37 radius 57.78
    78783 
    78784 > view matrix models #102,1,0,0,786.76,0,1,0,312.14,0,0,1,387.44
    78785 
    78786 > view matrix models #102,1,0,0,803.59,0,1,0,313.69,0,0,1,379.29
    78787 
    78788 > view matrix models #102,1,0,0,804.48,0,1,0,337.58,0,0,1,373.35
    78789 
    78790 > view matrix models #102,1,0,0,818.78,0,1,0,337.73,0,0,1,376.33
    78791 
    78792 > view matrix models #102,1,0,0,792.94,0,1,0,334.51,0,0,1,371.06
    78793 
    78794 > view matrix models #102,1,0,0,793.98,0,1,0,338.04,0,0,1,370.31
    78795 
    78796 > volume erase #97 center 793.98,338.04,370.31 radius 34.026
    78797 
    78798 > view matrix models #102,1,0,0,830.25,0,1,0,321.5,0,0,1,375.05
    78799 
    78800 > view matrix models #102,1,0,0,828.35,0,1,0,333.31,0,0,1,377.56
    78801 
    78802 > view matrix models #102,1,0,0,825.74,0,1,0,335.74,0,0,1,372.92
    78803 
    78804 > volume erase #97 center 825.74,335.74,372.92 radius 34.026
    78805 
    78806 > view matrix models #102,1,0,0,901.77,0,1,0,340.29,0,0,1,357.06
    78807 
    78808 > view matrix models #102,1,0,0,900.5,0,1,0,433.21,0,0,1,350.14
    78809 
    78810 > view matrix models #102,1,0,0,865.47,0,1,0,457.69,0,0,1,353.3
    78811 
    78812 > view matrix models #102,1,0,0,860.08,0,1,0,465.23,0,0,1,366.42
    78813 
    78814 > view matrix models #102,1,0,0,865.43,0,1,0,455.46,0,0,1,363.77
    78815 
    78816 > view matrix models #102,1,0,0,865.17,0,1,0,456.67,0,0,1,368.81
    78817 
    78818 > view matrix models #102,1,0,0,864.49,0,1,0,455.82,0,0,1,367.83
    78819 
    78820 > volume erase #97 center 864.49,455.82,367.83 radius 34.026
    78821 
    78822 > view matrix models #102,1,0,0,867.81,0,1,0,480.17,0,0,1,444.3
    78823 
    78824 > select subtract #102
    78825 
    78826 Nothing selected 
    78827 
    78828 > hide #102 models
    78829 
    78830 > hide #!97 models
    78831 
    78832 > show #!97 models
    78833 
    78834 > volume gaussian #97 sDev 3
    78835 
    78836 Opened Single-MotA-ring.mrc gaussian as #193, grid size 200,200,200, pixel
    78837 2.14, shown at step 1, values float32 
    78838 
    78839 > close #192
    78840 
    78841 > show #102 models
    78842 
    78843 > select add #102
    78844 
    78845 1 model selected 
    78846 
    78847 > view matrix models #102,1,0,0,887.49,0,1,0,431.5,0,0,1,364.44
    78848 
    78849 > view matrix models #102,1,0,0,868.09,0,1,0,448.32,0,0,1,341.15
    78850 
    78851 > view matrix models #102,1,0,0,807.1,0,1,0,406.62,0,0,1,348.07
    78852 
    78853 > close #193
    78854 
    78855 > volume gaussian #97 sDev 2.5
    78856 
    78857 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    78858 2.14, shown at step 1, values float32 
    78859 
    78860 > view matrix models #102,1,0,0,803.3,0,1,0,389.04,0,0,1,345.78
    78861 
    78862 > view matrix models #102,1,0,0,803.04,0,1,0,388.19,0,0,1,344.76
    78863 
    78864 > volume erase #192 center 803.04,388.19,344.76 radius 95.872 outside true
    78865 
    78866 > view matrix models #102,1,0,0,880.05,0,1,0,312.71,0,0,1,375.72
    78867 
    78868 > view matrix models #102,1,0,0,911.02,0,1,0,290.22,0,0,1,367.19
    78869 
    78870 > view matrix models #102,1,0,0,903.26,0,1,0,290.16,0,0,1,356.47
    78871 
    78872 > volume erase #192 center 903.26,290.16,356.47 radius 95.872
    78873 
    78874 > view matrix models #102,1,0,0,704.54,0,1,0,494.29,0,0,1,454.96
    78875 
    78876 > view matrix models #102,1,0,0,920.06,0,1,0,337.52,0,0,1,465.3
    78877 
    78878 > view matrix models #102,1,0,0,954.27,0,1,0,349.71,0,0,1,390.14
    78879 
    78880 > view matrix models #102,1,0,0,937.78,0,1,0,341.52,0,0,1,354.61
    78881 
    78882 > volume erase #192 center 937.78,341.52,354.61 radius 95.872
    78883 
    78884 > view matrix models #102,1,0,0,666.62,0,1,0,406.86,0,0,1,403.15
    78885 
    78886 > view matrix models #102,1,0,0,660.26,0,1,0,395.83,0,0,1,351.92
    78887 
    78888 > view matrix models #102,1,0,0,661.04,0,1,0,391.4,0,0,1,351.38
    78889 
    78890 > volume erase #192 center 661.04,391.4,351.38 radius 95.872
    78891 
    78892 > view matrix models #102,1,0,0,676.12,0,1,0,484.84,0,0,1,354.56
    78893 
    78894 > view matrix models #102,1,0,0,702.87,0,1,0,477.99,0,0,1,428.6
    78895 
    78896 > view matrix models #102,1,0,0,700.58,0,1,0,477.63,0,0,1,427.48
    78897 
    78898 > volume erase #192 center 700.58,477.63,427.48 radius 95.872
    78899 
    78900 > view matrix models #102,1,0,0,883.6,0,1,0,474.85,0,0,1,475.41
    78901 
    78902 > view matrix models #102,1,0,0,932.14,0,1,0,438.27,0,0,1,440.71
    78903 
    78904 > volume erase #192 center 932.14,438.27,440.71 radius 95.872
    78905 
    78906 > view matrix models #102,1,0,0,768.92,0,1,0,240.95,0,0,1,416.7
    78907 
    78908 > view matrix models #102,1,0,0,793.99,0,1,0,270.9,0,0,1,420.59
    78909 
    78910 > volume erase #192 center 793.99,270.9,420.59 radius 95.872
    78911 
    78912 > view matrix models #102,1,0,0,676.43,0,1,0,405.35,0,0,1,378.69
    78913 
    78914 > view matrix models #102,1,0,0,782.9,0,1,0,435.12,0,0,1,230.53
    78915 
    78916 > view matrix models #102,1,0,0,765.87,0,1,0,440.24,0,0,1,190.93
    78917 
    78918 > view matrix models #102,1,0,0,743.92,0,1,0,443.98,0,0,1,207.31
    78919 
    78920 > volume erase #192 center 743.92,443.98,207.31 radius 95.872
    78921 
    78922 > view matrix models #102,1,0,0,925.02,0,1,0,347.27,0,0,1,398.05
    78923 
    78924 > view matrix models #102,1,0,0,935.11,0,1,0,333.41,0,0,1,394.61
    78925 
    78926 > view matrix models #102,1,0,0,933.41,0,1,0,336.1,0,0,1,396.05
    78927 
    78928 > volume erase #192 center 933.41,336.1,396.05 radius 95.872
    78929 
    78930 > view matrix models #102,1,0,0,870.11,0,1,0,279.66,0,0,1,377.67
    78931 
    78932 > view matrix models #102,1,0,0,870.66,0,1,0,278.42,0,0,1,378.1
    78933 
    78934 > view matrix models #102,1,0,0,879.46,0,1,0,272.12,0,0,1,393.49
    78935 
    78936 > view matrix models #102,1,0,0,859.15,0,1,0,261.05,0,0,1,400.57
    78937 
    78938 > view matrix models #102,1,0,0,842.56,0,1,0,273,0,0,1,410.65
    78939 
    78940 > view matrix models #102,1,0,0,844.02,0,1,0,277.85,0,0,1,413.99
    78941 
    78942 > volume erase #192 center 844.02,277.85,413.99 radius 95.872
    78943 
    78944 > volume #192 level 0.0009973
    78945 
    78946 > view matrix models #102,1,0,0,693.07,0,1,0,376.22,0,0,1,306.54
    78947 
    78948 > view matrix models #102,1,0,0,654.03,0,1,0,430.61,0,0,1,272.39
    78949 
    78950 > view matrix models #102,1,0,0,683.58,0,1,0,476.06,0,0,1,279.66
    78951 
    78952 > view matrix models #102,1,0,0,686.22,0,1,0,476.68,0,0,1,282.82
    78953 
    78954 > volume erase #192 center 686.22,476.68,282.82 radius 95.872
    78955 
    78956 > view matrix models #102,1,0,0,643.64,0,1,0,373.51,0,0,1,242.64
    78957 
    78958 > select subtract #102
    78959 
    78960 Nothing selected 
    78961 
    78962 > hide #102 models
    78963 
    78964 > show #!3 models
    78965 
    78966 > view orient
    78967 
    78968 > turn z 21.176471 models #192 center #3
    78969 
    78970 > volume copy #192
    78971 
    78972 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    78973 pixel 2.14, shown at step 1, values float32 
    78974 
    78975 > volume #192 show
    78976 
    78977 > turn z 21.176471 models #192 center #3
    78978 
    78979 > volume copy #192
    78980 
    78981 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    78982 pixel 2.14, shown at step 1, values float32 
    78983 
    78984 > volume #192 show
    78985 
    78986 > turn z 21.176471 models #192 center #3
    78987 
    78988 > volume copy #192
    78989 
    78990 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    78991 pixel 2.14, shown at step 1, values float32 
    78992 
    78993 > volume #192 show
    78994 
    78995 > turn z 21.176471 models #192 center #3
    78996 
    78997 > volume copy #192
    78998 
    78999 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    79000 pixel 2.14, shown at step 1, values float32 
    79001 
    79002 > volume #192 show
    79003 
    79004 > turn z 21.176471 models #192 center #3
    79005 
    79006 > volume copy #192
    79007 
    79008 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    79009 pixel 2.14, shown at step 1, values float32 
    79010 
    79011 > volume #192 show
    79012 
    79013 > turn z 21.176471 models #192 center #3
    79014 
    79015 > volume copy #192
    79016 
    79017 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    79018 pixel 2.14, shown at step 1, values float32 
    79019 
    79020 > volume #192 show
    79021 
    79022 > turn z 21.176471 models #192 center #3
    79023 
    79024 > volume copy #192
    79025 
    79026 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    79027 pixel 2.14, shown at step 1, values float32 
    79028 
    79029 > volume #192 show
    79030 
    79031 > turn z 21.176471 models #192 center #3
    79032 
    79033 > volume copy #192
    79034 
    79035 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    79036 pixel 2.14, shown at step 1, values float32 
    79037 
    79038 > volume #192 show
    79039 
    79040 > turn z 21.176471 models #192 center #3
    79041 
    79042 > volume copy #192
    79043 
    79044 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    79045 pixel 2.14, shown at step 1, values float32 
    79046 
    79047 > volume #192 show
    79048 
    79049 > turn z 21.176471 models #192 center #3
    79050 
    79051 > volume copy #192
    79052 
    79053 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    79054 pixel 2.14, shown at step 1, values float32 
    79055 
    79056 > volume #192 show
    79057 
    79058 > turn z 21.176471 models #192 center #3
    79059 
    79060 > volume copy #192
    79061 
    79062 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    79063 pixel 2.14, shown at step 1, values float32 
    79064 
    79065 > volume #192 show
    79066 
    79067 > turn z 21.176471 models #192 center #3
    79068 
    79069 > volume copy #192
    79070 
    79071 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    79072 pixel 2.14, shown at step 1, values float32 
    79073 
    79074 > volume #192 show
    79075 
    79076 > turn z 21.176471 models #192 center #3
    79077 
    79078 > volume copy #192
    79079 
    79080 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    79081 pixel 2.14, shown at step 1, values float32 
    79082 
    79083 > volume #192 show
    79084 
    79085 > turn z 21.176471 models #192 center #3
    79086 
    79087 > volume copy #192
    79088 
    79089 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    79090 pixel 2.14, shown at step 1, values float32 
    79091 
    79092 > volume #192 show
    79093 
    79094 > turn z 21.176471 models #192 center #3
    79095 
    79096 > volume copy #192
    79097 
    79098 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    79099 pixel 2.14, shown at step 1, values float32 
    79100 
    79101 > volume #192 show
    79102 
    79103 > turn z 21.176471 models #192 center #3
    79104 
    79105 > volume copy #192
    79106 
    79107 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    79108 pixel 2.14, shown at step 1, values float32 
    79109 
    79110 > volume #192 show
    79111 
    79112 > turn z 21.176471 models #192 center #3
    79113 
    79114 > volume copy #192
    79115 
    79116 Opened Single-MotA-ring.mrc gaussian copy as #209, grid size 200,200,200,
    79117 pixel 2.14, shown at step 1, values float32 
    79118 
    79119 > volume #192 show
    79120 
    79121 > save /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    79122 > includeMaps true
    79123 
    79124 > hide #!192 models
    79125 
    79126 > hide #!192-209 models
    79127 
    79128 > show #!98 models
    79129 
    79130 > show #!90 models
    79131 
    79132 > color #98 #b2ffffe5 models
    79133 
    79134 > color #98 #b2ffff75 models
    79135 
    79136 > color #98 #b2fffff5 models
    79137 
    79138 > ui tool show "Segment Map"
    79139 
    79140 Segmenting 1xPflAB_region.mrc, density threshold 0.001017 
    79141 Showing 675 region surfaces 
    79142 23655 watershed regions, grouped to 675 regions 
    79143 Showing 1xPflAB_region.seg - 675 regions, 675 surfaces 
    79144 
    79145 > select add #102
    79146 
    79147 676 models selected 
    79148 
    79149 > select clear
    79150 
    79151 > select #102.5
    79152 
    79153 1 model selected 
    79154 
    79155 > select add #102.3
    79156 
    79157 2 models selected 
    79158 
    79159 > select add #102.1
    79160 
    79161 3 models selected 
    79162 
    79163 > select add #102.6
    79164 
    79165 4 models selected 
    79166 
    79167 > select add #102.2
    79168 
    79169 5 models selected 
    79170 
    79171 > select add #102.7
    79172 
    79173 6 models selected 
    79174 
    79175 > select add #102.4
    79176 
    79177 7 models selected 
    79178 
    79179 > select add #102.8
    79180 
    79181 8 models selected 
    79182 Opened 1xPflAB_region_imasked as #210, grid size 200,200,200, pixel 2.14,
    79183 shown at step 1, values float32 
    79184 Segmenting 1xPflAB_region_imasked, density threshold 0.001017 
    79185 Showing 8 region surfaces 
    79186 648 watershed regions, grouped to 8 regions 
    79187 Showing 1xPflAB_region_imasked.seg - 8 regions, 8 surfaces 
    79188 
    79189 > select add #102
    79190 
    79191 9 models selected 
    79192 
    79193 > view matrix models #102,1,0,0,566.55,0,1,0,259.03,0,0,1,150.41
    79194 
    79195 > view matrix models #102,1,0,0,578.08,0,1,0,255.38,0,0,1,143.97
    79196 
    79197 > view matrix models #102,1,0,0,577.11,0,1,0,271.9,0,0,1,244.58
    79198 
    79199 > view matrix models #102,1,0,0,588.42,0,1,0,262.38,0,0,1,243.75
    79200 
    79201 > ui mousemode right "rotate selected models"
    79202 
    79203 > view matrix models
    79204 > #102,0.97772,0.20961,-0.010793,550.06,-0.20924,0.97745,0.028377,302.47,0.016498,-0.025486,0.99954,246.07
    79205 
    79206 > ui mousemode right "translate selected models"
    79207 
    79208 > view matrix models
    79209 > #102,0.97772,0.20961,-0.010793,538.58,-0.20924,0.97745,0.028377,319.31,0.016498,-0.025486,0.99954,246.45
    79210 
    79211 > ui mousemode right "rotate selected models"
    79212 
    79213 > view matrix models
    79214 > #102,0.98149,0.19125,-0.010081,541.64,-0.19094,0.98126,0.025775,315.43,0.014822,-0.023373,0.99962,246.3
    79215 
    79216 > select clear
    79217 
    79218 > select #102.4
    79219 
    79220 1 model selected 
    79221 
    79222 > select add #102.7
    79223 
    79224 2 models selected 
    79225 
    79226 > select add #102.8
    79227 
    79228 3 models selected 
    79229 
    79230 > select add #102.2
    79231 
    79232 4 models selected 
    79233 
    79234 > select add #102.6
    79235 
    79236 5 models selected 
    79237 
    79238 > select add #102.1
    79239 
    79240 6 models selected 
    79241 Grouped 6 regions 
    79242 
    79243 > hide #!98 models
    79244 
    79245 > show #!98 models
    79246 
    79247 > hide #!98 models
    79248 
    79249 > hide #!210 models
    79250 
    79251 > show #!210 models
    79252 
    79253 > hide #!210 models
    79254 
    79255 Opened 1xPflAB_region_imasked_imasked as #211, grid size 200,200,200, pixel
    79256 2.14, shown at step 1, values float32 
    79257 
    79258 > save "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    79259 > Compositions/Resegment-PflABCD/PflAB_wout_FlgYoverlap.mrc" models #211
    79260 
    79261 > close #210-211
    79262 
    79263 > hide #!102 models
    79264 
    79265 > select add #102
    79266 
    79267 4 models selected 
    79268 
    79269 > show #!98 models
    79270 
    79271 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    79272 > Compositions/Resegment-PflABCD/PflAB_wout_FlgYoverlap.mrc"
    79273 
    79274 Opened PflAB_wout_FlgYoverlap.mrc as #210, grid size 200,200,200, pixel 2.14,
    79275 shown at level 0.000859, step 1, values float32 
    79276 
    79277 > select subtract #102
    79278 
    79279 Nothing selected 
    79280 
    79281 > select add #210
    79282 
    79283 2 models selected 
    79284 
    79285 > ui mousemode right "translate selected models"
    79286 
    79287 > view matrix models #210,1,0,0,578.72,0,1,0,299.37,0,0,1,-24.019
    79288 
    79289 > view matrix models #210,1,0,0,597.07,0,1,0,372.63,0,0,1,194.65
    79290 
    79291 > view matrix models #210,1,0,0,582.41,0,1,0,264.41,0,0,1,235.27
    79292 
    79293 > view matrix models #210,1,0,0,582.02,0,1,0,269.07,0,0,1,236.36
    79294 
    79295 > ui mousemode right "rotate selected models"
    79296 
    79297 > view matrix models
    79298 > #210,0.99419,0.10498,0.023912,555.81,-0.10552,0.99417,0.022294,288.03,-0.021432,-0.024687,0.99947,246.29
    79299 
    79300 > ui mousemode right "translate selected models"
    79301 
    79302 > view matrix models
    79303 > #210,0.99419,0.10498,0.023912,549.46,-0.10552,0.99417,0.022294,288.68,-0.021432,-0.024687,0.99947,247.85
    79304 
    79305 > ui mousemode right "rotate selected models"
    79306 
    79307 > view matrix models
    79308 > #210,0.97904,0.19809,0.04735,527.87,-0.20002,0.97897,0.040111,308.25,-0.038409,-0.048742,0.99807,256.89
    79309 
    79310 > ui mousemode right "translate selected models"
    79311 
    79312 > view matrix models
    79313 > #210,0.97904,0.19809,0.04735,523.15,-0.20002,0.97897,0.040111,316.32,-0.038409,-0.048742,0.99807,259.68
    79314 
    79315 > ui tool show "Fit in Map"
    79316 
    79317 > fitmap #210 inMap #98
    79318 
    79319 Fit map PflAB_wout_FlgYoverlap.mrc in map 1xPflAB_region.mrc using 78673
    79320 points 
    79321 correlation = 0.9999, correlation about mean = 0.9999, overlap = 42.54 
    79322 steps = 116, shift = 4.67, angle = 3.81 degrees 
    79323  
    79324 Position of PflAB_wout_FlgYoverlap.mrc (#210) relative to 1xPflAB_region.mrc
    79325 (#98) coordinates: 
    79326 Matrix rotation and translation 
    79327 0.99999941 0.00097539 -0.00048027 -0.15166260 
    79328 -0.00097521 0.99999945 0.00038164 0.17245805 
    79329 0.00048065 -0.00038117 0.99999981 -0.04876032 
    79330 Axis -0.33103101 -0.41700049 -0.84648040 
    79331 Axis point 185.12467932 148.96149283 0.00000000 
    79332 Rotation angle (degrees) 0.06601510 
    79333 Shift along axis 0.01956459 
    79334  
    79335 
    79336 > hide #!98 models
    79337 
    79338 > hide #!90 models
    79339 
    79340 > show #!90 models
    79341 
    79342 > hide #!90 models
    79343 
    79344 > hide #!3 models
    79345 
    79346 > save /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    79347 > includeMaps true
    79348 
    79349 > ui tool show "Map Eraser"
    79350 
    79351 > volume erase #210 center 835.67,491,484.11 radius 101.9 outside true
    79352 
    79353 Opened PflAB_wout_FlgYoverlap.mrc copy as #212, grid size 200,200,200, pixel
    79354 2.14, shown at step 1, values float32 
    79355 
    79356 > volume erase #212 center 823.89,475.9,348.44 radius 101.86
    79357 
    79358 > volume erase #212 center 801.02,500.32,620.78 radius 101.86
    79359 
    79360 > volume erase #212 center 829.94,495.06,519.59 radius 24.396
    79361 
    79362 > volume erase #212 center 841.94,492.69,530.53 radius 24.396
    79363 
    79364 > volume erase #212 center 827.71,490.99,487.99 radius 14.124
    79365 
    79366 > volume erase #212 center 783.67,459.74,522.55 radius 14.124
    79367 
    79368 > volume erase #212 center 789.67,438.9,515.7 radius 14.124
    79369 
    79370 > volume erase #212 center 755.55,439.13,496.87 radius 14.124
    79371 
    79372 [Repeated 1 time(s)]
    79373 
    79374 > volume erase #212 center 787.55,562.02,481.72 radius 44.512
    79375 
    79376 > volume erase #212 center 728.45,527.69,481.76 radius 44.512
    79377 
    79378 > volume erase #212 center 798.57,566.03,524.86 radius 44.512
    79379 
    79380 > volume erase #212 center 929.77,486.91,451.38 radius 44.512
    79381 
    79382 > volume erase #212 center 903.46,411.82,475.64 radius 44.512
    79383 
    79384 > volume erase #212 center 878.86,414.21,523.76 radius 44.512
    79385 
    79386 > volume erase #212 center 843.04,448.66,511.91 radius 14.124
    79387 
    79388 > volume erase #212 center 809.36,484.73,510.77 radius 14.124
    79389 
    79390 > volume erase #212 center 845.37,512.41,449.17 radius 14.124
    79391 
    79392 [Repeated 1 time(s)]
    79393 
    79394 > hide #211 models
    79395 
    79396 > show #!210 models
    79397 
    79398 > hide #!210 models
    79399 
    79400 > select subtract #210
    79401 
    79402 Nothing selected 
    79403 
    79404 > view orient
    79405 
    79406 > show #!3 models
    79407 
    79408 > view orient
    79409 
    79410 > turn z 21.176471 models #212 center #3
    79411 
    79412 > volume copy #212
    79413 
    79414 Opened PflAB_wout_FlgYoverlap.mrc copy as #213, grid size 200,200,200, pixel
    79415 2.14, shown at step 1, values float32 
    79416 
    79417 > volume #212 show
    79418 
    79419 > turn z 21.176471 models #212 center #3
    79420 
    79421 > volume copy #212
    79422 
    79423 Opened PflAB_wout_FlgYoverlap.mrc copy as #214, grid size 200,200,200, pixel
    79424 2.14, shown at step 1, values float32 
    79425 
    79426 > volume #212 show
    79427 
    79428 > turn z 21.176471 models #212 center #3
    79429 
    79430 > volume copy #212
    79431 
    79432 Opened PflAB_wout_FlgYoverlap.mrc copy as #215, grid size 200,200,200, pixel
    79433 2.14, shown at step 1, values float32 
    79434 
    79435 > volume #212 show
    79436 
    79437 > turn z 21.176471 models #212 center #3
    79438 
    79439 > volume copy #212
    79440 
    79441 Opened PflAB_wout_FlgYoverlap.mrc copy as #216, grid size 200,200,200, pixel
    79442 2.14, shown at step 1, values float32 
    79443 
    79444 > volume #212 show
    79445 
    79446 > turn z 21.176471 models #212 center #3
    79447 
    79448 > volume copy #212
    79449 
    79450 Opened PflAB_wout_FlgYoverlap.mrc copy as #217, grid size 200,200,200, pixel
    79451 2.14, shown at step 1, values float32 
    79452 
    79453 > volume #212 show
    79454 
    79455 > turn z 21.176471 models #212 center #3
    79456 
    79457 > volume copy #212
    79458 
    79459 Opened PflAB_wout_FlgYoverlap.mrc copy as #218, grid size 200,200,200, pixel
    79460 2.14, shown at step 1, values float32 
    79461 
    79462 > volume #212 show
    79463 
    79464 > turn z 21.176471 models #212 center #3
    79465 
    79466 > volume copy #212
    79467 
    79468 Opened PflAB_wout_FlgYoverlap.mrc copy as #219, grid size 200,200,200, pixel
    79469 2.14, shown at step 1, values float32 
    79470 
    79471 > volume #212 show
    79472 
    79473 > turn z 21.176471 models #212 center #3
    79474 
    79475 > volume copy #212
    79476 
    79477 Opened PflAB_wout_FlgYoverlap.mrc copy as #220, grid size 200,200,200, pixel
    79478 2.14, shown at step 1, values float32 
    79479 
    79480 > volume #212 show
    79481 
    79482 > turn z 21.176471 models #212 center #3
    79483 
    79484 > volume copy #212
    79485 
    79486 Opened PflAB_wout_FlgYoverlap.mrc copy as #221, grid size 200,200,200, pixel
    79487 2.14, shown at step 1, values float32 
    79488 
    79489 > volume #212 show
    79490 
    79491 > turn z 21.176471 models #212 center #3
    79492 
    79493 > volume copy #212
    79494 
    79495 Opened PflAB_wout_FlgYoverlap.mrc copy as #222, grid size 200,200,200, pixel
    79496 2.14, shown at step 1, values float32 
    79497 
    79498 > volume #212 show
    79499 
    79500 > turn z 21.176471 models #212 center #3
    79501 
    79502 > volume copy #212
    79503 
    79504 Opened PflAB_wout_FlgYoverlap.mrc copy as #223, grid size 200,200,200, pixel
    79505 2.14, shown at step 1, values float32 
    79506 
    79507 > volume #212 show
    79508 
    79509 > turn z 21.176471 models #212 center #3
    79510 
    79511 > volume copy #212
    79512 
    79513 Opened PflAB_wout_FlgYoverlap.mrc copy as #224, grid size 200,200,200, pixel
    79514 2.14, shown at step 1, values float32 
    79515 
    79516 > volume #212 show
    79517 
    79518 > turn z 21.176471 models #212 center #3
    79519 
    79520 > volume copy #212
    79521 
    79522 Opened PflAB_wout_FlgYoverlap.mrc copy as #225, grid size 200,200,200, pixel
    79523 2.14, shown at step 1, values float32 
    79524 
    79525 > volume #212 show
    79526 
    79527 > turn z 21.176471 models #212 center #3
    79528 
    79529 > volume copy #212
    79530 
    79531 Opened PflAB_wout_FlgYoverlap.mrc copy as #226, grid size 200,200,200, pixel
    79532 2.14, shown at step 1, values float32 
    79533 
    79534 > volume #212 show
    79535 
    79536 > turn z 21.176471 models #212 center #3
    79537 
    79538 > volume copy #212
    79539 
    79540 Opened PflAB_wout_FlgYoverlap.mrc copy as #227, grid size 200,200,200, pixel
    79541 2.14, shown at step 1, values float32 
    79542 
    79543 > volume #212 show
    79544 
    79545 > turn z 21.176471 models #212 center #3
    79546 
    79547 > volume copy #212
    79548 
    79549 Opened PflAB_wout_FlgYoverlap.mrc copy as #228, grid size 200,200,200, pixel
    79550 2.14, shown at step 1, values float32 
    79551 
    79552 > volume #212 show
    79553 
    79554 > turn z 21.176471 models #212 center #3
    79555 
    79556 > volume copy #212
    79557 
    79558 Opened PflAB_wout_FlgYoverlap.mrc copy as #229, grid size 200,200,200, pixel
    79559 2.14, shown at step 1, values float32 
    79560 
    79561 > volume #212 show
    79562 
    79563 > show #!90 models
    79564 
    79565 > surface dust #3 size 43
    79566 
    79567 > surface dust #90 size 21.4
    79568 
    79569 > surface dust #212 size 21.4
    79570 
    79571 > surface dust #213 size 21.4
    79572 
    79573 > surface dust #214 size 21.4
    79574 
    79575 > surface dust #215 size 21.4
    79576 
    79577 > surface dust #216 size 21.4
    79578 
    79579 > surface dust #217 size 21.4
    79580 
    79581 > surface dust #218 size 21.4
    79582 
    79583 > surface dust #219 size 21.4
    79584 
    79585 > surface dust #220 size 21.4
    79586 
    79587 > surface dust #221 size 21.4
    79588 
    79589 > surface dust #222 size 21.4
    79590 
    79591 > surface dust #223 size 21.4
    79592 
    79593 > surface dust #224 size 21.4
    79594 
    79595 > surface dust #225 size 21.4
    79596 
    79597 > surface dust #226 size 21.4
    79598 
    79599 > surface dust #227 size 21.4
    79600 
    79601 > surface dust #228 size 21.4
    79602 
    79603 > surface dust #229 size 21.4
    79604 
    79605 > close #213-229
    79606 
    79607 > volume gaussian #212 sDev 2
    79608 
    79609 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian as #213, grid size
    79610 200,200,200, pixel 2.14, shown at step 1, values float32 
    79611 
    79612 > volume #213 level 0.000211
    79613 
    79614 > close #213
    79615 
    79616 > volume gaussian #212 sDev 1.5
    79617 
    79618 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian as #213, grid size
    79619 200,200,200, pixel 2.14, shown at step 1, values float32 
    79620 
    79621 > volume #213 level 0.0002265
    79622 
    79623 > surface dust #3 size 43
    79624 
    79625 > surface dust #90 size 21.4
    79626 
    79627 > surface dust #213 size 21.4
    79628 
    79629 > view orient
    79630 
    79631 > turn z 21.176471 models #213 center #3
    79632 
    79633 > volume copy #213
    79634 
    79635 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    79636 200,200,200, pixel 2.14, shown at step 1, values float32 
    79637 
    79638 > volume #213 show
    79639 
    79640 > turn z 21.176471 models #213 center #3
    79641 
    79642 > volume copy #213
    79643 
    79644 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    79645 200,200,200, pixel 2.14, shown at step 1, values float32 
    79646 
    79647 > volume #213 show
    79648 
    79649 > turn z 21.176471 models #213 center #3
    79650 
    79651 > volume copy #213
    79652 
    79653 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    79654 200,200,200, pixel 2.14, shown at step 1, values float32 
    79655 
    79656 > volume #213 show
    79657 
    79658 > turn z 21.176471 models #213 center #3
    79659 
    79660 > volume copy #213
    79661 
    79662 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    79663 200,200,200, pixel 2.14, shown at step 1, values float32 
    79664 
    79665 > volume #213 show
    79666 
    79667 > turn z 21.176471 models #213 center #3
    79668 
    79669 > volume copy #213
    79670 
    79671 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    79672 200,200,200, pixel 2.14, shown at step 1, values float32 
    79673 
    79674 > volume #213 show
    79675 
    79676 > turn z 21.176471 models #213 center #3
    79677 
    79678 > volume copy #213
    79679 
    79680 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    79681 200,200,200, pixel 2.14, shown at step 1, values float32 
    79682 
    79683 > volume #213 show
    79684 
    79685 > turn z 21.176471 models #213 center #3
    79686 
    79687 > volume copy #213
    79688 
    79689 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    79690 200,200,200, pixel 2.14, shown at step 1, values float32 
    79691 
    79692 > volume #213 show
    79693 
    79694 > turn z 21.176471 models #213 center #3
    79695 
    79696 > volume copy #213
    79697 
    79698 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    79699 200,200,200, pixel 2.14, shown at step 1, values float32 
    79700 
    79701 > volume #213 show
    79702 
    79703 > turn z 21.176471 models #213 center #3
    79704 
    79705 > volume copy #213
    79706 
    79707 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    79708 200,200,200, pixel 2.14, shown at step 1, values float32 
    79709 
    79710 > volume #213 show
    79711 
    79712 > turn z 21.176471 models #213 center #3
    79713 
    79714 > volume copy #213
    79715 
    79716 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    79717 200,200,200, pixel 2.14, shown at step 1, values float32 
    79718 
    79719 > volume #213 show
    79720 
    79721 > turn z 21.176471 models #213 center #3
    79722 
    79723 > volume copy #213
    79724 
    79725 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    79726 200,200,200, pixel 2.14, shown at step 1, values float32 
    79727 
    79728 > volume #213 show
    79729 
    79730 > turn z 21.176471 models #213 center #3
    79731 
    79732 > volume copy #213
    79733 
    79734 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    79735 200,200,200, pixel 2.14, shown at step 1, values float32 
    79736 
    79737 > volume #213 show
    79738 
    79739 > turn z 21.176471 models #213 center #3
    79740 
    79741 > volume copy #213
    79742 
    79743 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    79744 200,200,200, pixel 2.14, shown at step 1, values float32 
    79745 
    79746 > volume #213 show
    79747 
    79748 > turn z 21.176471 models #213 center #3
    79749 
    79750 > volume copy #213
    79751 
    79752 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    79753 200,200,200, pixel 2.14, shown at step 1, values float32 
    79754 
    79755 > volume #213 show
    79756 
    79757 > turn z 21.176471 models #213 center #3
    79758 
    79759 > volume copy #213
    79760 
    79761 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    79762 200,200,200, pixel 2.14, shown at step 1, values float32 
    79763 
    79764 > volume #213 show
    79765 
    79766 > turn z 21.176471 models #213 center #3
    79767 
    79768 > volume copy #213
    79769 
    79770 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    79771 200,200,200, pixel 2.14, shown at step 1, values float32 
    79772 
    79773 > volume #213 show
    79774 
    79775 > turn z 21.176471 models #213 center #3
    79776 
    79777 > volume copy #213
    79778 
    79779 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    79780 200,200,200, pixel 2.14, shown at step 1, values float32 
    79781 
    79782 > volume #213 show
    79783 
    79784 > surface dust #213-230 size 58.49
    79785 
    79786 > surface dust #213-230 size 70.49
    79787 
    79788 > surface dust #213-230 size 90.49
    79789 
    79790 > volume #228 level 0.0004499
    79791 
    79792 > volume #213-230 level 0.0004499
    79793 
    79794 > save /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    79795 > includeMaps true
    79796 
    79797 > volume #90 level 0.01875
    79798 
    79799 > volume #90 level 0.01518
    79800 
    79801 > volume #90 level 0.02124
    79802 
    79803 > volume #90 level 0.02053
    79804 
    79805 > volume gaussian #90 sDev 1.5
    79806 
    79807 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    79808 shown at step 1, values float32 
    79809 
    79810 > close #231
    79811 
    79812 > volume #90 level 0.01518
    79813 
    79814 > volume gaussian #90 sDev 1
    79815 
    79816 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    79817 shown at step 1, values float32 
    79818 
    79819 > close #231
    79820 
    79821 > volume gaussian #90 sDev 1.5
    79822 
    79823 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    79824 shown at step 1, values float32 
    79825 
    79826 > volume #231 level 0.01124
    79827 
    79828 > save /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    79829 > includeMaps true
    79830 
    79831 > show #!91 models
    79832 
    79833 > volume #91 level 0.001924
    79834 
    79835 > hide #!213 models
    79836 
    79837 > hide #!213-231 models
    79838 
    79839 > ui tool show "Segment Map"
    79840 
    79841 Segmenting MS-ring_New.mrc, density threshold 0.001924 
    79842 Showing 111 region surfaces 
    79843 5377 watershed regions, grouped to 111 regions 
    79844 Showing MS-ring_New.seg - 111 regions, 111 surfaces 
    79845 
    79846 > select add #102
    79847 
    79848 112 models selected 
    79849 
    79850 > ui mousemode right "translate selected models"
    79851 
    79852 > view matrix models #102,1,0,0,134.06,0,1,0,22.057,0,0,1,235.23
    79853 
    79854 > view matrix models #102,1,0,0,216.74,0,1,0,265.66,0,0,1,164.2
    79855 
    79856 > view matrix models #102,1,0,0,61,0,1,0,246.94,0,0,1,179.32
    79857 
    79858 > view matrix models #102,1,0,0,59.391,0,1,0,246.74,0,0,1,178.18
    79859 
    79860 > hide #!91 models
    79861 
    79862 > show #!91 models
    79863 
    79864 > hide #!91 models
    79865 
    79866 > show #!91 models
    79867 
    79868 > select clear
    79869 
    79870 > select #102.43
    79871 
    79872 1 model selected 
    79873 
    79874 > select add #102.30
    79875 
    79876 2 models selected 
    79877 
    79878 > select #102.43
    79879 
    79880 1 model selected 
    79881 
    79882 > select add #102.60
    79883 
    79884 2 models selected 
    79885 
    79886 > select add #102.22
    79887 
    79888 3 models selected 
    79889 Grouped 3 regions 
    79890 
    79891 > select #102.22
    79892 
    79893 1 model selected 
    79894 Ungrouped to 3 regions 
    79895 
    79896 > select #102.112
    79897 
    79898 1 model selected 
    79899 Ungrouped to 2 regions 
    79900 Ungrouped to 13 regions 
    79901 
    79902 > select subtract #102.114
    79903 
    79904 12 models selected 
    79905 Grouped 12 regions 
    79906 
    79907 > select add #102.60
    79908 
    79909 2 models selected 
    79910 
    79911 > select add #102.30
    79912 
    79913 3 models selected 
    79914 
    79915 > select #102.30
    79916 
    79917 1 model selected 
    79918 Ungrouped to 2 regions 
    79919 
    79920 > select subtract #102.113
    79921 
    79922 1 model selected 
    79923 
    79924 > select #102.113
    79925 
    79926 1 model selected 
    79927 Ungrouped to 9 regions 
    79928 
    79929 > select subtract #102.118
    79930 
    79931 8 models selected 
    79932 Grouped 8 regions 
    79933 
    79934 > select add #102.112
    79935 
    79936 2 models selected 
    79937 
    79938 > select add #102.60
    79939 
    79940 3 models selected 
    79941 
    79942 > select add #102.22
    79943 
    79944 4 models selected 
    79945 
    79946 > select add #102.24
    79947 
    79948 5 models selected 
    79949 Grouped 5 regions 
    79950 
    79951 > select add #102.43
    79952 
    79953 2 models selected 
    79954 
    79955 > select add #102.34
    79956 
    79957 3 models selected 
    79958 
    79959 > select add #102.37
    79960 
    79961 4 models selected 
    79962 Grouped 4 regions 
    79963 
    79964 > select #102.81
    79965 
    79966 1 model selected 
    79967 Ungrouped to 2 regions 
    79968 Ungrouped to 11 regions 
    79969 
    79970 > select subtract #102.117
    79971 
    79972 10 models selected 
    79973 Grouped 10 regions 
    79974 
    79975 > select #102.117
    79976 
    79977 1 model selected 
    79978 Ungrouped to 2 regions 
    79979 
    79980 > select subtract #102.34
    79981 
    79982 1 model selected 
    79983 
    79984 > select add #102.24
    79985 
    79986 2 models selected 
    79987 
    79988 > select add #102.22
    79989 
    79990 3 models selected 
    79991 Grouped 3 regions 
    79992 
    79993 > select #102.114
    79994 
    79995 1 model selected 
    79996 Ungrouped to 3 regions 
    79997 Ungrouped to 0 regions 
    79998 
    79999 > select #102.30
    80000 
    80001 1 model selected 
    80002 
    80003 > select add #102.22
    80004 
    80005 2 models selected 
    80006 
    80007 > select #102.30
    80008 
    80009 1 model selected 
    80010 
    80011 > select #102.74
    80012 
    80013 1 model selected 
    80014 
    80015 > select add #102.18
    80016 
    80017 2 models selected 
    80018 Ungrouped to 5 regions 
    80019 Ungrouped to 39 regions 
    80020 Ungrouped to 113 regions 
    80021 
    80022 > select subtract #102.247
    80023 
    80024 112 models selected 
    80025 
    80026 > select subtract #102.43
    80027 
    80028 111 models selected 
    80029 Grouped 111 regions 
    80030 
    80031 > select #102.129
    80032 
    80033 1 model selected 
    80034 
    80035 > select add #102.130
    80036 
    80037 2 models selected 
    80038 
    80039 > select #102.60
    80040 
    80041 1 model selected 
    80042 
    80043 > select add #102.130
    80044 
    80045 2 models selected 
    80046 
    80047 > select add #102.129
    80048 
    80049 3 models selected 
    80050 
    80051 > select add #102.151
    80052 
    80053 4 models selected 
    80054 Grouped 4 regions 
    80055 
    80056 > select #102.16
    80057 
    80058 1 model selected 
    80059 
    80060 > select #102.80
    80061 
    80062 1 model selected 
    80063 
    80064 > select add #102.60
    80065 
    80066 2 models selected 
    80067 
    80068 > select #102.80
    80069 
    80070 1 model selected 
    80071 
    80072 > select add #102.60
    80073 
    80074 2 models selected 
    80075 Grouped 2 regions 
    80076 
    80077 > select add #102.41
    80078 
    80079 2 models selected 
    80080 
    80081 > select add #102.32
    80082 
    80083 3 models selected 
    80084 
    80085 > select add #102.52
    80086 
    80087 4 models selected 
    80088 
    80089 > select #102.52
    80090 
    80091 1 model selected 
    80092 Ungrouped to 2 regions 
    80093 Ungrouped to 13 regions 
    80094 
    80095 > select subtract #102.81
    80096 
    80097 12 models selected 
    80098 Grouped 12 regions 
    80099 
    80100 > select add #102.82
    80101 
    80102 2 models selected 
    80103 
    80104 > select #102.32
    80105 
    80106 1 model selected 
    80107 
    80108 > select add #102.36
    80109 
    80110 2 models selected 
    80111 
    80112 > select #102.36
    80113 
    80114 1 model selected 
    80115 
    80116 > select #102.36
    80117 
    80118 1 model selected 
    80119 Ungrouped to 2 regions 
    80120 Ungrouped to 17 regions 
    80121 
    80122 > select subtract #102.119
    80123 
    80124 16 models selected 
    80125 Grouped 16 regions 
    80126 
    80127 > select add #102.32
    80128 
    80129 2 models selected 
    80130 
    80131 > select add #102.52
    80132 
    80133 3 models selected 
    80134 
    80135 > select add #102.35
    80136 
    80137 4 models selected 
    80138 
    80139 > select add #102.22
    80140 
    80141 5 models selected 
    80142 Grouped 5 regions 
    80143 
    80144 > select #102.82
    80145 
    80146 1 model selected 
    80147 Ungrouped to 2 regions 
    80148 Ungrouped to 10 regions 
    80149 Ungrouped to 37 regions 
    80150 
    80151 > select #102.52
    80152 
    80153 1 model selected 
    80154 
    80155 > select add #102.22
    80156 
    80157 2 models selected 
    80158 
    80159 > select #102.22
    80160 
    80161 1 model selected 
    80162 
    80163 > select #102.16
    80164 
    80165 1 model selected 
    80166 
    80167 > select add #102.41
    80168 
    80169 2 models selected 
    80170 
    80171 > select #102.41
    80172 
    80173 1 model selected 
    80174 
    80175 > select add #102.22
    80176 
    80177 2 models selected 
    80178 Grouped 2 regions 
    80179 
    80180 > select add #102.60
    80181 
    80182 2 models selected 
    80183 Grouped 2 regions 
    80184 
    80185 > select #102.16
    80186 
    80187 1 model selected 
    80188 Ungrouped to 3 regions 
    80189 Ungrouped to 26 regions 
    80190 Ungrouped to 83 regions 
    80191 
    80192 > select subtract #102.216
    80193 
    80194 82 models selected 
    80195 
    80196 > select subtract #102.217
    80197 
    80198 81 models selected 
    80199 Grouped 81 regions 
    80200 
    80201 > select add #102.22
    80202 
    80203 2 models selected 
    80204 Grouped 2 regions 
    80205 Drag select of 4720, 858 of 940 triangles, 4879, 4874, 4882, 4881, 4936, 4935,
    80206 4934, 4889, 4718, 700 of 764 triangles, 4710, 946 of 1008 triangles, 4876,
    80207 4711, 854 of 896 triangles, 4705, 722 of 756 triangles 
    80208 Grouped 15 regions 
    80209 Opened MS-ring_New_imasked as #211, grid size 256,256,256, pixel 2.14, shown
    80210 at step 1, values float32 
    80211 
    80212 > save "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    80213 > Compositions/Resegment_for-C17_FlgY/MS-ring_New_polished.mrc" models #211
    80214 
    80215 > hide #!102 models
    80216 
    80217 > select add #102
    80218 
    80219 147 models selected 
    80220 
    80221 > select subtract #102
    80222 
    80223 Nothing selected 
    80224 
    80225 > select add #211
    80226 
    80227 2 models selected 
    80228 
    80229 > hide #!91 models
    80230 
    80231 > volume gaussian #211 sDev 2
    80232 
    80233 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    80234 2.14, shown at step 1, values float32 
    80235 
    80236 > close #232
    80237 
    80238 > volume gaussian #211 sDev 1.5
    80239 
    80240 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    80241 2.14, shown at step 1, values float32 
    80242 
    80243 > volume #232 level 0.009738
    80244 
    80245 > save /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    80246 > includeMaps true
    80247 
    80248 > select subtract #211
    80249 
    80250 Nothing selected 
    80251 
    80252 > show #!212 models
    80253 
    80254 > show #!212-231 models
    80255 
    80256 > close #211
    80257 
    80258 > hide #!212 models
    80259 
    80260 > show #!212 models
    80261 
    80262 > hide #!230 models
    80263 
    80264 > hide #!229 models
    80265 
    80266 > show #!230 models
    80267 
    80268 > show #!229 models
    80269 
    80270 > hide #!212 models
    80271 
    80272 > hide #!229 models
    80273 
    80274 > show #!229 models
    80275 
    80276 > hide #!213 models
    80277 
    80278 > hide #!230 models
    80279 
    80280 > show #!230 models
    80281 
    80282 > hide #!230 models
    80283 
    80284 > show #!230 models
    80285 
    80286 > hide #!230 models
    80287 
    80288 > hide #!229 models
    80289 
    80290 > hide #!228 models
    80291 
    80292 > show #!230 models
    80293 
    80294 > show #!229 models
    80295 
    80296 > show #!228 models
    80297 
    80298 > hide #!214 models
    80299 
    80300 > show #!214 models
    80301 
    80302 > hide #!214 models
    80303 
    80304 > show #!214 models
    80305 
    80306 > hide #!214 models
    80307 
    80308 > hide #!230 models
    80309 
    80310 > show #!230 models
    80311 
    80312 > hide #!215 models
    80313 
    80314 > show #!215 models
    80315 
    80316 > show #!214 models
    80317 
    80318 > show #!213 models
    80319 
    80320 > close #213
    80321 
    80322 > show #!212 models
    80323 
    80324 > hide #!212 models
    80325 
    80326 > show #!212 models
    80327 
    80328 > hide #!212 models
    80329 
    80330 > close #212
    80331 
    80332 > show #!210 models
    80333 
    80334 > hide #!210 models
    80335 
    80336 > close #210
    80337 
    80338 > show #!209 models
    80339 
    80340 > show #!192-208 models
    80341 
    80342 > hide #!209 models
    80343 
    80344 > hide #!192 models
    80345 
    80346 > show #!192 models
    80347 
    80348 > hide #!208 models
    80349 
    80350 > show #!208 models
    80351 
    80352 > show #!209 models
    80353 
    80354 > hide #!209 models
    80355 
    80356 > close #209
    80357 
    80358 > show #!175-191 models
    80359 
    80360 > hide #!175 models
    80361 
    80362 > hide #!191 models
    80363 
    80364 > show #!191 models
    80365 
    80366 > show #!175 models
    80367 
    80368 > show #!168-174 models
    80369 
    80370 > show #!158-174 models
    80371 
    80372 > hide #!158 models
    80373 
    80374 > show #!158 models
    80375 
    80376 > hide #!174 models
    80377 
    80378 > show #!174 models
    80379 
    80380 > show #!141-157 models
    80381 
    80382 > hide #!141 models
    80383 
    80384 > show #!141 models
    80385 
    80386 > hide #!157 models
    80387 
    80388 > show #!157 models
    80389 
    80390 > hide #!141 models
    80391 
    80392 > show #!141 models
    80393 
    80394 > show #!124 models
    80395 
    80396 > show #!140 models
    80397 
    80398 > show #!125-139 models
    80399 
    80400 > show #!107 models
    80401 
    80402 > show #!123 models
    80403 
    80404 > show #!108-122 models
    80405 
    80406 > show #!79 models
    80407 
    80408 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    80409 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    80410 > review/Updated_Figures/07252025/Original-map-deposit/Seg/Basal_disk.mrc"
    80411 
    80412 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    80413 level 0.128, step 1, values float32 
    80414 
    80415 > volume #209 level 0.1571
    80416 
    80417 > close #79
    80418 
    80419 > color #209 #797979ff models
    80420 
    80421 > close #4-76
    80422 
    80423 > show #!80 models
    80424 
    80425 > show #!77 models
    80426 
    80427 > hide #!77 models
    80428 
    80429 > show #!82 models
    80430 
    80431 > hide #!82 models
    80432 
    80433 > show #!82 models
    80434 
    80435 > close #81
    80436 
    80437 > close #78
    80438 
    80439 > show #!77 models
    80440 
    80441 > show #!83 models
    80442 
    80443 > close #84-86
    80444 
    80445 > show #!87 models
    80446 
    80447 > hide #!87 models
    80448 
    80449 > show #!88 models
    80450 
    80451 > hide #!88 models
    80452 
    80453 > show #!90 models
    80454 
    80455 > close #90-106
    80456 
    80457 > show #!88 models
    80458 
    80459 > show #!89 models
    80460 
    80461 > color #88 #70887aff models
    80462 
    80463 > color #89 #70887aff models
    80464 
    80465 > save /Users/shoichi/Desktop/For_Composition-
    80466 > maps/Cleanup_Building_Composition.cxs includeMaps true
    80467 
    80468 ——— End of log from Tue Sep 9 13:34:58 2025 ———
    80469 
    80470 opened ChimeraX session 
    80471 
    80472 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    80473 > Compositions/WT_Deposited_Maps/C-Vrings.mrc"
    80474 
    80475 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    80476 0.0283, step 1, values float32 
    80477 
    80478 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    80479 > Compositions/WT_Deposited_Maps/C-Vrings.mrc"
    80480 
    80481 Opened C-Vrings.mrc as #5, grid size 250,250,250, pixel 4.3, shown at level
    80482 0.0283, step 1, values float32 
    80483 
    80484 > hide #!80 models
    80485 
    80486 > hide #!3 models
    80487 
    80488 > show #!3 models
    80489 
    80490 > hide #!4 models
    80491 
    80492 > hide #!5 models
    80493 
    80494 > hide #!77 models
    80495 
    80496 > show #!77 models
    80497 
    80498 > close #77
    80499 
    80500 > show #!4 models
    80501 
    80502 > close #5,80
    80503 
    80504 > close #2
    80505 
    80506 > show #!1 models
    80507 
    80508 > hide #!1 models
    80509 
    80510 > show #!1 models
    80511 
    80512 > hide #!1 models
    80513 
    80514 > hide #!107 models
    80515 
    80516 > color #4 #797979ff models
    80517 
    80518 > hide #!107-232 models
    80519 
    80520 > hide #!89 models
    80521 
    80522 > hide #!83 models
    80523 
    80524 > hide #!82 models
    80525 
    80526 > hide #!4 models
    80527 
    80528 > hide #!3 models
    80529 
    80530 > ui tool show "Map Eraser"
    80531 
    80532 > volume erase #88 center 101.29,313.39,686.09 radius 138.91
    80533 
    80534 > close #2
    80535 
    80536 > show #!107-232 models
    80537 
    80538 > show #!89 models
    80539 
    80540 > show #!3 models
    80541 
    80542 > show #!4 models
    80543 
    80544 > show #!82 models
    80545 
    80546 > save /Users/shoichi/Desktop/For_Composition-
    80547 > maps/Cleanup_Building_Composition.cxs includeMaps true
    80548 
    80549 > view orient
    80550 
    80551 > turn x 90
    80552 
    80553 [Repeated 2 time(s)]
    80554 
    80555 > color #158-174 #7b80ffff models
    80556 
    80557 > color #141-157 #adffc1ff models
    80558 
    80559 > color #107-123 #0b6dffff models
    80560 
    80561 > view orient
    80562 
    80563 > ui tool show "Side View"
    80564 
    80565 > color #214-230 #ff0002ff models
    80566 
    80567 > color #231 #dbb3e2ff models
    80568 
    80569 > color #232 #348e42ff models
    80570 
    80571 > color #175-191 #e2cf7bff models
    80572 
    80573 > color #192-208 #a69b32ff models
    80574 
    80575 > color #124-140 #be41c5ff models
    80576 
    80577 > color #124-140 #b86006ff models
    80578 
    80579 > save /Users/shoichi/Desktop/For_Composition-
    80580 > maps/Cleanup_Building_Composition.cxs includeMaps true
    80581 
    80582 > hide #!4 models
    80583 
    80584 > hide #!4-209 models
    80585 
    80586 > hide #!231 models
    80587 
    80588 > hide #!232 models
    80589 
    80590 > ui tool show "Surface Color"
    80591 
    80592 > color radial #214.1 palette #ff0000:#ffffff:#0000ff
    80593 
    80594 > color radial #214.1 palette 337.7,#ff0000:429.9,#ffffff:522,#0000ff center
    80595 > 821.11,612.79,486.31
    80596 
    80597 Surface Color: could not parse center "0" as 3 numbers 
    80598 
    80599 > color radial #214.1 palette #ff0000:#ffffff:#0000ff
    80600 
    80601 Surface Color: could not parse center "0" as 3 numbers 
    80602 
    80603 > color radial #214.1 palette #ff0000:#ffffff:#0000ff
    80604 
    80605 Surface Color: could not parse center "0" as 3 numbers 
    80606 
    80607 > color radial #214.1 palette 337.7,#ff0000:429.9,#ffffff:522,#0000ff
    80608 
    80609 Surface Color: could not parse center "0" as 3 numbers 
    80610 
    80611 > color radial #214.1 palette 337.7,#ff0000:429.9,#ffffff:522,#0000ff
    80612 
    80613 > color radial #214.1 palette 337.7,#ff0000:429.9,#ffffff:522,#0000ff center
    80614 > 821.11,612.79,486.31
    80615 
    80616 > color radial #214.1 palette 137.7,#ff0000:429.9,#ffffff:522,#0000ff center
    80617 > 821.11,612.79,486.31
    80618 
    80619 [Repeated 1 time(s)]
    80620 
    80621 > color radial #214.1 palette 137.7,#ff0000:129.9,#ffffff:122,#0000ff center
    80622 > 821.11,612.79,486.31
    80623 
    80624 Surface Color: could not parse center "" as 3 numbers 
    80625 
    80626 > color radial #214.1 palette 137.7,#ff0000:129.9,#ffffff:122,#0000ff
    80627 
    80628 Surface Color: could not parse center "" as 3 numbers 
    80629 
    80630 > color radial #214.1 palette 137.7,#ff0000:129.9,#ffffff:122,#0000ff
    80631 
    80632 Surface Color: could not parse center "" as 3 numbers 
    80633 
    80634 > color radial #214.1 palette 17.7,#ff0000:129.9,#ffffff:122,#0000ff
    80635 
    80636 Surface Color: could not parse center "" as 3 numbers 
    80637 
    80638 > color radial #214.1 palette 97.7,#ff0000:129.9,#ffffff:122,#0000ff
    80639 
    80640 Surface Color: could not parse center "" as 3 numbers 
    80641 
    80642 > color radial #214.1 palette 117.7,#ff0000:129.9,#ffffff:122,#0000ff
    80643 
    80644 Surface Color: could not parse center "" as 3 numbers 
    80645 
    80646 > color radial #214.1 palette 117.7,#ff0000:129.9,#ffffff:122,#0000ff
    80647 
    80648 Surface Color: could not parse center "" as 3 numbers 
    80649 
    80650 > color radial #214.1 palette #ff0000:#ffffff:#0000ff
    80651 
    80652 Surface Color: could not parse center "" as 3 numbers 
    80653 
    80654 > color radial #214.1 palette #ff0000:#ffffff:#0000ff
    80655 
    80656 Surface Color: could not parse center "" as 3 numbers 
    80657 
    80658 > color radial #214.1 palette #ff0000:#ffffff:#0000ff:#808080:#808080:#808080
    80659 
    80660 Surface Color: could not parse center "" as 3 numbers 
    80661 
    80662 > color radial #214.1 palette
    80663 > 337.7,#ff0000:374.6,#ff0000:411.4,#0000ff:448.3,#808080:485.1,#808080:522,#808080
    80664 
    80665 Surface Color: could not parse center "" as 3 numbers 
    80666 
    80667 > color radial #214.1 palette
    80668 > 337.7,#ff0000:374.6,#ff0000:411.4,#ff0000:448.3,#808080:485.1,#808080:522,#808080
    80669 
    80670 Surface Color: could not parse center "" as 3 numbers 
    80671 
    80672 > color radial #214.1 palette
    80673 > 337.7,#ff0000:374.6,#ff0000:411.4,#ff0000:448.3,#808080:485.1,#808080:522,#808080
    80674 
    80675 Surface Color: could not parse center "" as 3 numbers 
    80676 
    80677 > color cylindrical #214.1 palette
    80678 > 337.7,#ff0000:374.6,#ff0000:411.4,#ff0000:448.3,#808080:485.1,#808080:522,#808080
    80679 
    80680 Surface Color: could not parse center "" as 3 numbers 
    80681 
    80682 > color radial #214.1 palette
    80683 > 337.7,#ff0000:374.6,#ff0000:411.4,#ff0000:448.3,#808080:485.1,#808080:522,#808080
    80684 
    80685 Surface Color: could not parse center "" as 3 numbers 
    80686 
    80687 > color radial #214.1 palette
    80688 > 337.7,#ff0000:374.6,#ff0000:390.4,#ff0000:448.3,#808080:485.1,#808080:522,#808080
    80689 
    80690 Surface Color: could not parse center "" as 3 numbers 
    80691 
    80692 > color radial #214.1 palette
    80693 > 337.7,#ff0000:374.6,#ff0000:400.4,#ff0000:448.3,#808080:485.1,#808080:522,#808080
    80694 
    80695 Surface Color: could not parse center "" as 3 numbers 
    80696 
    80697 > color radial #214.1 palette
    80698 > 337.7,#ff0000:374.6,#ff0000:410.4,#ff0000:448.3,#808080:485.1,#808080:522,#808080
    80699 
    80700 Surface Color: could not parse center "" as 3 numbers 
    80701 
    80702 > color radial #214.1 palette
    80703 > 337.7,#ff0000:374.6,#ff0000:410.4,#ff0000:448.3,#808080:485.1,#808080:522,#808080
    80704 
    80705 Surface Color: could not parse center "" as 3 numbers 
    80706 
    80707 > color radial #214.1 palette
    80708 > 337.7,#ff0000:374.6,#ff0000:410.4,#ff0000:448.3,#923e6f:485.1,#808080:522,#808080
    80709 
    80710 Surface Color: could not parse center "" as 3 numbers 
    80711 
    80712 > color radial #214.1 palette
    80713 > 337.7,#ff0000:374.6,#ff0000:410.4,#ff0000:448.3,#923e6f:485.1,#ff40ff:522,#ff40ff
    80714 
    80715 Surface Color: could not parse center "" as 3 numbers 
    80716 
    80717 > color radial #214.1 palette
    80718 > 337.7,#ff0000:374.6,#ff0000:405.4,#ff0000:448.3,#923e6f:485.1,#ff40ff:522,#ff40ff
    80719 
    80720 Surface Color: could not parse center "" as 3 numbers 
    80721 
    80722 > color radial #214.1 palette
    80723 > 337.7,#ff0000:374.6,#ff0000:405.4,#ff0000:448.3,#923e6f:485.1,#ff40ff:522,#ff40ff
    80724 
    80725 > color radial #214.1 palette
    80726 > 337.7,#ff0000:374.6,#ff0000:405.4,#ff0000:448.3,#923e6f:485.1,#ff40ff:522,#ff40ff
    80727 > center 614.38,336.59,237.88
    80728 
    80729 [Repeated 2 time(s)]
    80730 
    80731 > color radial #214.1 palette
    80732 > 337.7,#ff0000:374.6,#ff0000:405.4,#ff0000:448.3,#923e6f:485.1,#ff40ff:522,#ff40ff
    80733 > center 537.21,536.85,714.3
    80734 
    80735 > color radial #214.1 palette
    80736 > 337.7,#ff0000:374.6,#ff0000:405.4,#ff0000:448.3,#923e6f center
    80737 > 537.21,536.85,714.3
    80738 
    80739 [Repeated 1 time(s)]
    80740 
    80741 > color radial #214.1 palette
    80742 > 337.7,#ff0000:374.6,#ff0000:405.4,#ff40ff:448.3,#923e6f center
    80743 > 537.21,536.85,714.3
    80744 
    80745 > color cylindrical #214.1 palette
    80746 > 337.7,#ff0000:374.6,#ff0000:405.4,#ff40ff:448.3,#923e6f center
    80747 > 537.21,536.85,714.3
    80748 
    80749 > color cylindrical #214.1 palette
    80750 > 337.7,#ff0000:374.6,#ff0000:405.4,#ff40ff:448.3,#923e6f center
    80751 > 537.21,536.85,714.3 axis 0,0,0
    80752 
    80753 > color cylindrical #214.1 palette
    80754 > 337.7,#ff0000:374.6,#ff0000:405.4,#ff40ff:448.3,#923e6f center
    80755 > 537.21,536.85,714.3 axis 0,0,-1
    80756 
    80757 > color cylindrical #214.1 palette
    80758 > 337.7,#ff0000:354.6,#ff0000:405.4,#ff40ff:448.3,#923e6f center
    80759 > 537.21,536.85,714.3 axis 0,0,-1
    80760 
    80761 > color cylindrical #214.1 palette
    80762 > 337.7,#ff0000:354.6,#ff0000:405.4,#ff40ff:448.3,#923e6f center
    80763 > 537.21,536.85,714.3 axis 0,-1,-1
    80764 
    80765 > color cylindrical #214.1 palette
    80766 > 337.7,#ff0000:354.6,#ff0000:405.4,#ff40ff:448.3,#923e6f center
    80767 > 537.21,536.85,714.3 axis 0,-0.5,-1
    80768 
    80769 > color cylindrical #214.1 palette
    80770 > 337.7,#ff0000:354.6,#ff0000:405.4,#ff40ff:448.3,#923e6f center
    80771 > 537.21,536.85,714.3 axis 0,1,-1
    80772 
    80773 > color cylindrical #214.1 palette
    80774 > 337.7,#ff0000:354.6,#ff0000:415.4,#ff40ff:448.3,#923e6f center
    80775 > 537.21,536.85,714.3 axis 0,1,-1
    80776 
    80777 > color radial #214.1 palette
    80778 > 337.7,#ff0000:354.6,#ff0000:415.4,#ff40ff:448.3,#923e6f center
    80779 > 537.21,536.85,714.3
    80780 
    80781 [Repeated 2 time(s)]
    80782 
    80783 > color radial #214.1 palette
    80784 > 337.7,#ff0000:354.6,#ff0000:415.4,#ff40ff:448.3,#923e6f center
    80785 > 821.11,612.79,486.31
    80786 
    80787 > show #!232 models
    80788 
    80789 > color radial #214.1 palette
    80790 > 337.7,#ff0000:354.6,#ff0000:415.4,#ff40ff:448.3,#923e6f center
    80791 > 536.27,535.94,464.54
    80792 
    80793 > color radial #214.1 palette 337.7,#ff0000:354.6,#ff0000:415.4,#ff40ff center
    80794 > 536.27,535.94,464.54
    80795 
    80796 [Repeated 1 time(s)]
    80797 
    80798 > color radial #214.1 palette 137.7,#ff0000:354.6,#ff0000:415.4,#ff40ff center
    80799 > 536.27,535.94,464.54
    80800 
    80801 [Repeated 1 time(s)]
    80802 
    80803 > color radial #214.1 palette 137.7,#ff0000:254.6,#ff0000:415.4,#ff40ff center
    80804 > 536.27,535.94,464.54
    80805 
    80806 > color radial #214.1 palette 137.7,#ff0000:254.6,#ff0000:315.4,#ff40ff center
    80807 > 536.27,535.94,464.54
    80808 
    80809 > color radial #214.1 palette 137.7,#ff0000:254.6,#ff0000:215.4,#ff40ff center
    80810 > 536.27,535.94,464.54
    80811 
    80812 > color radial #214.1 palette 137.7,#ff0000:254.6,#ff0000:315.4,#ff40ff center
    80813 > 536.27,535.94,464.54
    80814 
    80815 > color radial #214.1 palette 137.7,#ff0000:354.6,#ff0000:315.4,#ff40ff center
    80816 > 536.27,535.94,464.54
    80817 
    80818 > color radial #214.1 palette 137.7,#ff0000:554.6,#ff0000:315.4,#ff40ff center
    80819 > 536.27,535.94,464.54
    80820 
    80821 > color radial #214.1 palette 137.7,#ff0000:554.6,#ff40ff center
    80822 > 536.27,535.94,464.54
    80823 
    80824 > key red:138 #ff40ff:555 showTool true
    80825 
    80826 > ui mousemode right "color key"
    80827 
    80828 > key red:138 #ff40ff:555 showTool true
    80829 
    80830 > close #2
    80831 
    80832 > ui mousemode right "map eraser"
    80833 
    80834 > close #2
    80835 
    80836 > color radial #214.1 palette 137.7,#ff0000:554.6,#ff40ff center
    80837 > 536.27,535.94,464.54
    80838 
    80839 > color radial #214.1 palette #ff0000:#ff40ff center 536.27,535.94,464.54
    80840 
    80841 [Repeated 1 time(s)]
    80842 
    80843 > color radial #214.1 palette 213.6,#ff0000:400,#ff0000 center
    80844 > 536.27,535.94,464.54
    80845 
    80846 > color radial #214.1 palette #ff0000:#ff0000:#ff40ff center
    80847 > 536.27,535.94,464.54
    80848 
    80849 > color radial #214.1 palette 213.6,#ff0000:306.8,#ff0000:350,#ff40ff center
    80850 > 536.27,535.94,464.54
    80851 
    80852 > color radial #215.1 palette 213.6,#ff0000:306.8,#ff0000:350,#ff40ff center
    80853 > 536.27,535.94,464.54
    80854 
    80855 > color radial #216.1 palette 213.6,#ff0000:306.8,#ff0000:350,#ff40ff center
    80856 > 536.27,535.94,464.54
    80857 
    80858 > color radial #217.1 palette 213.6,#ff0000:306.8,#ff0000:350,#ff40ff center
    80859 > 536.27,535.94,464.54
    80860 
    80861 > color radial #2178.1 palette 213.6,#ff0000:306.8,#ff0000:350,#ff40ff center
    80862 > 536.27,535.94,464.54
    80863 
    80864 > color radial #2179.1 palette 213.6,#ff0000:306.8,#ff0000:350,#ff40ff center
    80865 > 536.27,535.94,464.54
    80866 
    80867 > color radial #21710.1 palette 213.6,#ff0000:306.8,#ff0000:350,#ff40ff center
    80868 > 536.27,535.94,464.54
    80869 
    80870 > view orient
    80871 
    80872 > color radial #214.1 palette #ff0000:#ff0000:#ff40ff:#923e6f center
    80873 > 536.27,535.94,464.54
    80874 
    80875 > color radial #214.1 palette
    80876 > 213.6,#ff0000:275.7,#ff0000:337.9,#ff40ff:400,#923e6f center
    80877 > 536.27,535.94,464.54
    80878 
    80879 [Repeated 1 time(s)]
    80880 
    80881 > color radial #214.1 palette
    80882 > 213.6,#ff0000:275.7,#ff0000:337.9,#ff40ff:400,#ff40ff center
    80883 > 536.27,535.94,464.54
    80884 
    80885 [Repeated 2 time(s)]
    80886 
    80887 > color radial #214.1 palette
    80888 > 213.6,#ff0000:205.7,#ff0000:337.9,#ff40ff:400,#ff40ff center
    80889 > 536.27,535.94,464.54
    80890 
    80891 [Repeated 1 time(s)]
    80892 
    80893 > color radial #214.1 palette
    80894 > 213.6,#ff0000:255.7,#ff0000:337.9,#ff40ff:400,#ff40ff center
    80895 > 536.27,535.94,464.54
    80896 
    80897 > color radial #214.1 palette
    80898 > 213.6,#ff0000:285.7,#ff0000:337.9,#ff40ff:400,#ff40ff center
    80899 > 536.27,535.94,464.54
    80900 
    80901 > hide #!215 models
    80902 
    80903 > hide #!216 models
    80904 
    80905 > hide #!217 models
    80906 
    80907 > hide #!218 models
    80908 
    80909 > color radial #214.1 palette
    80910 > 213.6,#ff0000:285.7,#ff0000:337.9,#ff40ff:400,#ff40ff center
    80911 > 536.27,535.94,464.54
    80912 
    80913 > color radial #214.1 palette #ff0000:#ff0000:#ff40ff:#ff40ff:#ff40ff center
    80914 > 536.27,535.94,464.54
    80915 
    80916 > color radial #214.1 palette
    80917 > 213.6,#ff0000:260.2,#ff0000:306.8,#ff0000:353.4,#ff40ff:400,#ff40ff center
    80918 > 536.27,535.94,464.54
    80919 
    80920 > color radial #214.1 palette
    80921 > 213.6,#ff0000:260.2,#ff0000:296.8,#ff0000:353.4,#ff40ff:400,#ff40ff center
    80922 > 536.27,535.94,464.54
    80923 
    80924 > color radial #214.1 palette
    80925 > 213.6,#ff0000:260.2,#ff0000:270.8,#ff0000:353.4,#ff40ff:400,#ff40ff center
    80926 > 536.27,535.94,464.54
    80927 
    80928 > color radial #214.1 palette
    80929 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:353.4,#ff40ff:400,#ff40ff center
    80930 > 536.27,535.94,464.54
    80931 
    80932 > color radial #214.1 palette
    80933 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:373.4,#ff40ff:400,#ff40ff center
    80934 > 536.27,535.94,464.54
    80935 
    80936 > color radial #214.1 palette
    80937 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:373.4,#ff40ff:400,#ff40ff center
    80938 > 536.27,535.94,364.54
    80939 
    80940 > color radial #214.1 palette
    80941 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:303.4,#ff40ff:400,#ff40ff center
    80942 > 536.27,535.94,364.54
    80943 
    80944 > color radial #214.1 palette
    80945 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    80946 > 536.27,535.94,364.54
    80947 
    80948 > color radial #214.1 palette
    80949 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    80950 > 536.27,535.94,304.54
    80951 
    80952 > color radial #214.1 palette
    80953 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    80954 > 536.27,535.94,394.54
    80955 
    80956 > color radial #214.1 palette
    80957 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#f82288:400,#ff40ff center
    80958 > 536.27,535.94,394.54
    80959 
    80960 [Repeated 1 time(s)]
    80961 
    80962 > color radial #214.1 palette
    80963 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#f82288:400,#ff40ff center
    80964 > 536.27,535.94,404.54
    80965 
    80966 [Repeated 1 time(s)]
    80967 
    80968 > color radial #214.1 palette
    80969 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    80970 > 536.27,535.94,404.54
    80971 
    80972 [Repeated 1 time(s)]
    80973 
    80974 > color radial #214.1 palette
    80975 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    80976 > 536.27,435.94,404.54
    80977 
    80978 > color radial #214.1 palette
    80979 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    80980 > 536.27,635.94,404.54
    80981 
    80982 > color radial #214.1 palette
    80983 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    80984 > 536.27,535.94,404.54
    80985 
    80986 > color radial #214.1 palette
    80987 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    80988 > 436.27,535.94,404.54
    80989 
    80990 > color radial #214.1 palette
    80991 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    80992 > 536.27,535.94,404.54
    80993 
    80994 > color radial #214.1 palette
    80995 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    80996 > 636.27,535.94,404.54
    80997 
    80998 > color radial #214.1 palette
    80999 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    81000 > 586.27,535.94,404.54
    81001 
    81002 > color radial #214.1 palette
    81003 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    81004 > 556.27,535.94,404.54
    81005 
    81006 > color radial #214.1 palette
    81007 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    81008 > 546.27,535.94,404.54
    81009 
    81010 > color radial #214.1 palette
    81011 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    81012 > 536.27,535.94,404.54
    81013 
    81014 > color radial #214.1 palette
    81015 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    81016 > 526.27,535.94,404.54
    81017 
    81018 > color radial #214.1 palette
    81019 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    81020 > 520.27,535.94,404.54
    81021 
    81022 > color radial #214.1 palette
    81023 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    81024 > 510.27,535.94,404.54
    81025 
    81026 > color radial #214.1 palette
    81027 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    81028 > 520.27,535.94,404.54
    81029 
    81030 > color radial #214.1 palette
    81031 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    81032 > 520.27,525.94,404.54
    81033 
    81034 > color radial #214.1 palette
    81035 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    81036 > 520.27,545.94,404.54
    81037 
    81038 > color radial #214.1 palette
    81039 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    81040 > 520.27,555.94,404.54
    81041 
    81042 > color radial #214.1 palette
    81043 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    81044 > 520.27,585.94,404.54
    81045 
    81046 > color radial #214.1 palette
    81047 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    81048 > 520.27,555.94,404.54
    81049 
    81050 > color radial #214.1 palette
    81051 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    81052 > 520.27,525.94,404.54
    81053 
    81054 > color radial #214.1 palette
    81055 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    81056 > 520.27,545.94,404.54
    81057 
    81058 > color radial #214.1 palette
    81059 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81060 > 520.27,545.94,404.54
    81061 
    81062 [Repeated 1 time(s)]
    81063 
    81064 > color radial #214.1 palette
    81065 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81066 > 520.27,545.94,394.54
    81067 
    81068 [Repeated 1 time(s)]
    81069 
    81070 > color radial #214.1 palette
    81071 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81072 > 520.27,545.94,384.54
    81073 
    81074 > color radial #214.1 palette
    81075 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81076 > 520.27,545.94,304.54
    81077 
    81078 > color radial #214.1 palette
    81079 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81080 > 520.27,545.94,454.54
    81081 
    81082 > color radial #214.1 palette
    81083 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81084 > 520.27,545.94,434.54
    81085 
    81086 > color radial #214.1 palette
    81087 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81088 > 520.27,545.94,424.54
    81089 
    81090 > color radial #214.1 palette
    81091 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81092 > 520.27,545.94,414.54
    81093 
    81094 > color radial #214.1 palette
    81095 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81096 > 520.27,545.94,418.54
    81097 
    81098 > color radial #214.1 palette
    81099 > 213.6,#ff0000:270.2,#ff0000:295.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81100 > 520.27,545.94,418.54
    81101 
    81102 > color radial #214.1 palette
    81103 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81104 > 520.27,545.94,418.54
    81105 
    81106 > color radial #214.1 palette
    81107 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81108 > 520.27,245.94,418.54
    81109 
    81110 > color radial #214.1 palette
    81111 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81112 > 520.27,445.94,418.54
    81113 
    81114 > color radial #214.1 palette
    81115 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81116 > 520.27,545.94,418.54
    81117 
    81118 > color radial #214.1 palette
    81119 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81120 > 520.27,445.94,418.54
    81121 
    81122 > color radial #214.1 palette
    81123 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81124 > 520.27,465.94,418.54
    81125 
    81126 > color radial #214.1 palette
    81127 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81128 > 520.27,435.94,418.54
    81129 
    81130 > color radial #214.1 palette
    81131 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81132 > 420.27,435.94,418.54
    81133 
    81134 > color radial #214.1 palette
    81135 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81136 > 620.27,435.94,418.54
    81137 
    81138 > color radial #214.1 palette
    81139 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81140 > 520.27,435.94,418.54
    81141 
    81142 > color radial #214.1 palette
    81143 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81144 > 525.27,435.94,418.54
    81145 
    81146 > color radial #214.1 palette
    81147 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81148 > 565.27,435.94,418.54
    81149 
    81150 > color radial #214.1 palette
    81151 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81152 > 545.27,435.94,418.54
    81153 
    81154 > color radial #214.1 palette
    81155 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81156 > 540.27,435.94,418.54
    81157 
    81158 > show #!215 models
    81159 
    81160 > show #!216 models
    81161 
    81162 > show #!217 models
    81163 
    81164 > show #!218 models
    81165 
    81166 > color radial #215.1 palette
    81167 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81168 > 540.27,435.94,418.54
    81169 
    81170 > color radial #216.1 palette
    81171 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81172 > 540.27,435.94,418.54
    81173 
    81174 > color radial #217.1 palette
    81175 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    81176 > 540.27,435.94,418.54
    81177 
    81178 > color radial #217.1 palette
    81179 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:400,#ff40ff:403.4,#ff40ff center
    81180 > 540.27,435.94,418.54
    81181 
    81182 > color radial #214.1 palette
    81183 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:400,#ff40ff:403.4,#ff40ff center
    81184 > 540.27,435.94,418.54
    81185 
    81186 [Repeated 1 time(s)]
    81187 
    81188 > hide #!215 models
    81189 
    81190 > hide #!216 models
    81191 
    81192 > hide #!217 models
    81193 
    81194 > color radial #214.1 palette
    81195 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:400,#ff40ff:403.4,#ff40ff center
    81196 > 540.27,435.94,418.54
    81197 
    81198 > color radial #214.1 palette
    81199 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:400,#ff40ff:403.4,#ff40ff center
    81200 > 536.27,535.94,464.54
    81201 
    81202 > color radial #214.1 palette #ff0000:#ff0000:#ff0000:#ff40ff:#ff40ff:#ff40ff
    81203 > center 536.27,535.94,464.54
    81204 
    81205 > color radial #214.1 palette
    81206 > 213.6,#ff0000:250.8,#ff0000:298.1,#ff0000:325.4,#ff40ff:362.7,#ff40ff:400,#ff40ff
    81207 > center 536.27,535.94,464.54
    81208 
    81209 > color radial #214.1 palette
    81210 > 213.6,#ff0000:250.8,#ff0000:288.1,#ff0000:325.4,#ff40ff:362.7,#ff40ff:400,#ff40ff
    81211 > center 536.27,535.94,464.54
    81212 
    81213 [Repeated 1 time(s)]
    81214 
    81215 > color radial #214.1 palette
    81216 > 213.6,#ff0000:250.8,#ff0000:288.1,#ff0000:325.4,#ff40ff:362.7,#ff40ff:400,#ff40ff
    81217 > center 536.27,535.94,564.54
    81218 
    81219 > color radial #214.1 palette
    81220 > 213.6,#ff0000:250.8,#ff0000:288.1,#ff0000:325.4,#ff40ff:362.7,#ff40ff:400,#ff40ff
    81221 > center 536.27,535.94,404.54
    81222 
    81223 > color radial #214.1 palette
    81224 > 213.6,#ff0000:250.8,#ff0000:288.1,#ff0000:325.4,#ff40ff:362.7,#ff40ff:400,#ff40ff
    81225 > center 536.27,535.94,564.54
    81226 
    81227 > color radial #214.1 palette
    81228 > 213.6,#ff0000:250.8,#ff0000:288.1,#ff0000:325.4,#ff40ff:362.7,#ff40ff:400,#ff40ff
    81229 > center 536.27,535.94,594.54
    81230 
    81231 > color radial #214.1 palette
    81232 > 213.6,#ff0000:250.8,#ff0000:288.1,#ff0000:325.4,#ff40ff:362.7,#ff40ff:400,#ff40ff
    81233 > center 536.27,535.94,564.54
    81234 
    81235 > color radial #214.1 palette
    81236 > 213.6,#ff0000:250.8,#ff0000:288.1,#ff0000:325.4,#ff40ff:362.7,#ff40ff:400,#ff40ff
    81237 > center 536.27,535.94,524.54
    81238 
    81239 > color radial #214.1 palette
    81240 > 213.6,#ff0000:250.8,#ff0000:288.1,#ff0000:325.4,#ff40ff:362.7,#ff40ff:400,#ff40ff
    81241 > center 536.27,535.94,464.54
    81242 
    81243 [Repeated 1 time(s)]
    81244 
    81245 > color radial #214.1 palette
    81246 > #ff0000:#ff0000:#ff0000:#ff40ff:#ff40ff:#ff40ff:#808080 center
    81247 > 536.27,535.94,464.54
    81248 
    81249 > color radial #214.1 palette
    81250 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:306.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#808080
    81251 > center 536.27,535.94,464.54
    81252 
    81253 > color radial #214.1 palette
    81254 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#808080
    81255 > center 536.27,535.94,464.54
    81256 
    81257 > color radial #214.1 palette
    81258 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81259 > center 536.27,535.94,464.54
    81260 
    81261 [Repeated 1 time(s)]
    81262 
    81263 > color radial #214.1 palette
    81264 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81265 > center 764,548,517
    81266 
    81267 > color radial #214.1 palette
    81268 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81269 > center 536.27,535.94,464.54
    81270 
    81271 > color radial #214.1 palette
    81272 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81273 > center 536.27,535.94,464.54
    81274 
    81275 > color cylindrical #214.1 palette
    81276 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81277 > center 536.27,535.94,464.54 axis 0,1,-1
    81278 
    81279 > color cylindrical #214.1 palette
    81280 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81281 > center 536.27,535.94,464.54 axis 0,0,0
    81282 
    81283 > color cylindrical #214.1 palette
    81284 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81285 > center 536.27,535.94,464.54 axis 0,1,0
    81286 
    81287 > color cylindrical #214.1 palette
    81288 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81289 > center 536.27,535.94,464.54 axis 0,-0.1,0
    81290 
    81291 [Repeated 1 time(s)]
    81292 
    81293 > color cylindrical #214.1 palette
    81294 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81295 > center 536.27,535.94,464.54 axis 0,0,0
    81296 
    81297 > color cylindrical #214.1 palette
    81298 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81299 > center 536.27,535.94,464.54 axis 1,0,0
    81300 
    81301 > color cylindrical #214.1 palette
    81302 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81303 > center 536.27,535.94,464.54 axis 0,0,0
    81304 
    81305 > color cylindrical #214.1 palette
    81306 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81307 > center 536.27,535.94,464.54
    81308 
    81309 > color cylindrical #214.1 palette
    81310 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81311 > center 536.27,535.94,464.54 axis 0,0,2
    81312 
    81313 > color cylindrical #214.1 palette
    81314 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81315 > center 536.27,535.94,464.54 axis 0,0,1.5
    81316 
    81317 [Repeated 1 time(s)]
    81318 
    81319 > color cylindrical #214.1 palette
    81320 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81321 > center 536.27,535.94,464.54 axis 0,0,1.1
    81322 
    81323 > color cylindrical #214.1 palette
    81324 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81325 > center 536.27,535.94,464.54
    81326 
    81327 > color cylindrical #214.1 palette
    81328 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81329 > center 536.27,535.94,464.54 axis 1,0,1
    81330 
    81331 > color cylindrical #214.1 palette
    81332 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81333 > center 536.27,535.94,464.54
    81334 
    81335 > color cylindrical #214.1 palette
    81336 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81337 > center 536.27,535.94,464.54 axis 0,0,0
    81338 
    81339 > key red:214 red:245 red:276 red:287 #ff40ff:358 #ff40ff:369 #ff40ff:400
    81340 > showTool true
    81341 
    81342 > ui mousemode right "color key"
    81343 
    81344 > help help:user/tools/surfacecolor.html
    81345 
    81346 > color cylindrical #214.1 palette
    81347 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ed2e81:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81348 > center 536.27,535.94,464.54 axis 0,0,0
    81349 
    81350 [Repeated 1 time(s)]
    81351 
    81352 > color cylindrical #214.1 palette
    81353 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#e13e63:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81354 > center 536.27,535.94,464.54 axis 0,0,0
    81355 
    81356 [Repeated 2 time(s)]
    81357 
    81358 > color cylindrical #214.1 palette
    81359 > #ff0000:#ff0000:#ff0000:#e13e63:#ff40ff:#ff40ff:#ff40ff center
    81360 > 536.27,535.94,464.54 axis 0,0,0
    81361 
    81362 [Repeated 1 time(s)]
    81363 
    81364 > color cylindrical #214.1 palette
    81365 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:306.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81366 > center 536.27,535.94,464.54 axis 0,0,0
    81367 
    81368 > color radial #214.1 palette
    81369 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:306.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81370 > center 536.27,535.94,464.54
    81371 
    81372 [Repeated 2 time(s)]
    81373 
    81374 > color radial #214.1 palette
    81375 > #ff0000:#ff0000:#ff0000:#ff0000:#ff40ff:#ff40ff:#ff40ff center
    81376 > 536.27,535.94,464.54
    81377 
    81378 > color radial #214.1 palette
    81379 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:306.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81380 > center 536.27,535.94,464.54
    81381 
    81382 [Repeated 1 time(s)]
    81383 
    81384 > color radial #214.1 palette
    81385 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:300.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81386 > center 536.27,535.94,464.54
    81387 
    81388 > color cylindrical #214.1 palette
    81389 > #ff0000:#ff0000:#ff0000:#ff0000:#ff40ff:#ff40ff:#ff40ff center
    81390 > 536.27,535.94,464.54 axis 0,0,0
    81391 
    81392 > color cylindrical #214.1 palette
    81393 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:306.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81394 > center 536.27,535.94,464.54 axis 0,0,0
    81395 
    81396 > color cylindrical #214.1 palette
    81397 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81398 > center 536.27,535.94,464.54 axis 0,0,0
    81399 
    81400 > color cylindrical #214.1 palette
    81401 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:289.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81402 > center 536.27,535.94,464.54 axis 0,0,0
    81403 
    81404 [Repeated 1 time(s)]
    81405 
    81406 > color cylindrical #214.1 palette
    81407 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:290,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81408 > center 536.27,535.94,464.54 axis 0,0,0
    81409 
    81410 [Repeated 1 time(s)]
    81411 
    81412 > color cylindrical #214.1 palette
    81413 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:299,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81414 > center 536.27,535.94,464.54 axis 0,0,0
    81415 
    81416 [Repeated 1 time(s)]
    81417 
    81418 > color cylindrical #214.1 palette
    81419 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:310,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81420 > center 536.27,535.94,464.54 axis 0,0,0
    81421 
    81422 > color cylindrical #214.1 palette
    81423 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:290,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81424 > center 536.27,535.94,464.54 axis 0,0,0
    81425 
    81426 > color cylindrical #214.1 palette
    81427 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:290,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81428 > center 536.27,535.94,464.54 axis 0,0,-1
    81429 
    81430 > color cylindrical #214.1 palette
    81431 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:290,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81432 > center 536.27,535.94,464.54
    81433 
    81434 > color cylindrical #214.1 palette
    81435 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:290,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81436 > center 536.27,535.94,464.54 axis 0,0,2
    81437 
    81438 > color cylindrical #214.1 palette
    81439 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:290,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81440 > center 536.27,535.94,464.54 axis 0,0,3
    81441 
    81442 [Repeated 2 time(s)]
    81443 
    81444 > color cylindrical #214.1 palette
    81445 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:290,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81446 > center 536.27,535.94,464.54 axis 0,0,-3
    81447 
    81448 [Repeated 1 time(s)]
    81449 
    81450 > color cylindrical #214.1 palette
    81451 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:290,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81452 > center 536.27,535.94,464.54 axis 0,0,-2
    81453 
    81454 [Repeated 1 time(s)]
    81455 
    81456 > color cylindrical #214.1 palette
    81457 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:290,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81458 > center 536.27,535.94,464.54 axis 0,0,0
    81459 
    81460 [Repeated 1 time(s)]
    81461 
    81462 > color cylindrical #214.1 palette
    81463 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81464 > center 536.27,535.94,464.54 axis 0,-2,0
    81465 
    81466 > color cylindrical #214.1 palette
    81467 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81468 > center 536.27,535.94,464.54 axis 0,2,0
    81469 
    81470 [Repeated 2 time(s)]
    81471 
    81472 > color cylindrical #214.1 palette
    81473 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81474 > center 536.27,535.94,464.54 axis 0,4,0
    81475 
    81476 [Repeated 2 time(s)]
    81477 
    81478 > color cylindrical #214.1 palette
    81479 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81480 > center 536.27,535.94,464.54 axis 0,2,0
    81481 
    81482 > color cylindrical #214.1 palette
    81483 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81484 > center 536.27,535.94,464.54 axis 0,5,0
    81485 
    81486 [Repeated 1 time(s)]
    81487 
    81488 > color cylindrical #214.1 palette
    81489 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81490 > center 536.27,535.94,464.54 axis 0,4,0
    81491 
    81492 [Repeated 1 time(s)]
    81493 
    81494 > color cylindrical #214.1 palette
    81495 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81496 > center 536.27,535.94,464.54 axis 0,-2,0
    81497 
    81498 [Repeated 1 time(s)]
    81499 
    81500 > color cylindrical #214.1 palette
    81501 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81502 > center 536.27,535.94,464.54 axis 0,-5,0
    81503 
    81504 > color cylindrical #214.1 palette
    81505 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81506 > center 536.27,535.94,464.54 axis 0,5,0
    81507 
    81508 [Repeated 1 time(s)]
    81509 
    81510 > color cylindrical #214.1 palette
    81511 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81512 > center 536.27,535.94,464.54 axis 0,2,0
    81513 
    81514 [Repeated 4 time(s)]
    81515 
    81516 > color cylindrical #214.1 palette
    81517 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81518 > center 536.27,535.94,464.54 axis 0,0,0
    81519 
    81520 [Repeated 1 time(s)]
    81521 
    81522 > color cylindrical #214.1 palette
    81523 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81524 > center 536.27,535.94,464.54 axis 0,-2,0
    81525 
    81526 > color cylindrical #214.1 palette
    81527 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81528 > center 536.27,535.94,464.54 axis 0,2,0
    81529 
    81530 [Repeated 4 time(s)]
    81531 
    81532 > color cylindrical #214.1 palette
    81533 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81534 > center 536.27,535.94,464.54 axis 0,0,0
    81535 
    81536 > color cylindrical #214.1 palette
    81537 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81538 > center 536.27,535.94,464.54 axis 0,2,0
    81539 
    81540 > color cylindrical #214.1 palette
    81541 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81542 > center 536.27,535.94,464.54 axis 0,0,0
    81543 
    81544 > color cylindrical #214.1 palette
    81545 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81546 > center 536.27,535.94,464.54 axis 0,-2,0
    81547 
    81548 > color cylindrical #214.1 palette
    81549 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81550 > center 536.27,535.94,464.54 axis 0,0,0
    81551 
    81552 > color cylindrical #214.1 palette
    81553 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81554 > center 536.27,535.94,464.54 axis 1,0,0
    81555 
    81556 > color cylindrical #214.1 palette
    81557 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81558 > center 536.27,535.94,464.54 axis -1,0,0
    81559 
    81560 [Repeated 1 time(s)]
    81561 
    81562 > color cylindrical #214.1 palette
    81563 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81564 > center 536.27,535.94,464.54 axis 0,0,0
    81565 
    81566 > select ~sel & ##selected
    81567 
    81568 Nothing selected 
    81569 
    81570 > color cylindrical #214.1 palette
    81571 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81572 > center 536.27,535.94,464.54 axis -1,0,0
    81573 
    81574 > color cylindrical #214.1 palette
    81575 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81576 > center 536.27,535.94,464.54 axis -2,0,0
    81577 
    81578 > color cylindrical #214.1 palette
    81579 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81580 > center 536.27,535.94,464.54 axis 2,0,0
    81581 
    81582 [Repeated 1 time(s)]
    81583 
    81584 > color cylindrical #214.1 palette
    81585 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81586 > center 536.27,535.94,464.54 axis 0,0,0
    81587 
    81588 > color cylindrical #214.1 palette
    81589 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81590 > center 536.27,535.94,464.54 axis 0,0,-2
    81591 
    81592 [Repeated 2 time(s)]
    81593 
    81594 > color cylindrical #214.1 palette
    81595 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81596 > center 536.27,535.94,464.54 axis 0,-2,-2
    81597 
    81598 > color cylindrical #214.1 palette
    81599 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81600 > center 536.27,535.94,464.54 axis 0,2,-2
    81601 
    81602 > color cylindrical #214.1 palette
    81603 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81604 > center 536.27,535.94,464.54 axis 0,0,-2
    81605 
    81606 > color cylindrical #214.1 palette
    81607 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81608 > center 536.27,535.94,464.54 axis 0,10,-2
    81609 
    81610 > color cylindrical #214.1 palette
    81611 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81612 > center 536.27,535.94,464.54 axis 0,-100,-2
    81613 
    81614 [Repeated 1 time(s)]
    81615 
    81616 > color cylindrical #214.1 palette
    81617 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81618 > center 536.27,535.94,464.54 axis 0,0,-2
    81619 
    81620 > color cylindrical #214.1 palette
    81621 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81622 > center 536.27,535.94,464.54 axis 0,-100,-2
    81623 
    81624 > color cylindrical #214.1 palette
    81625 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81626 > center 536.27,535.94,464.54 axis 0,0,-2
    81627 
    81628 > color cylindrical #214.1 palette
    81629 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81630 > center 536.27,535.94,464.54 axis 0,0,-10
    81631 
    81632 [Repeated 2 time(s)]
    81633 
    81634 > color cylindrical #214.1 palette
    81635 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81636 > center 536.27,535.94,464.54 axis 0,0,0
    81637 
    81638 [Repeated 2 time(s)]
    81639 
    81640 > color cylindrical #214.1 palette
    81641 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81642 > center 536.27,535.94,464.54 axis 0,0,100
    81643 
    81644 [Repeated 1 time(s)]
    81645 
    81646 > color cylindrical #214.1 palette
    81647 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81648 > center 536.27,535.94,464.54 axis 0,0,-10
    81649 
    81650 > color cylindrical #214.1 palette
    81651 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    81652 > center 536.27,535.94,464.54 axis 0,0,0
    81653 
    81654 [Repeated 2 time(s)]
    81655 
    81656 > color cylindrical #214.1 palette 213.6,#ff0000:244.6,#ff0000:275.7,#ed00e2
    81657 > center 536.27,535.94,464.54 axis 0,0,0
    81658 
    81659 > color cylindrical #214.1 palette 213.6,#ff0000:244.6,#ff0000:305.7,#ed00e2
    81660 > center 536.27,535.94,464.54 axis 0,0,0
    81661 
    81662 > color cylindrical #214.1 palette 213.6,#ff0000:244.6,#ff0000:505.7,#ed00e2
    81663 > center 536.27,535.94,464.54 axis 0,0,0
    81664 
    81665 > color cylindrical #214.1 palette 213.6,#ff0000:244.6,#ff0000:405.7,#ed00e2
    81666 > center 536.27,535.94,464.54 axis 0,0,0
    81667 
    81668 > color cylindrical #214.1 palette 213.6,#ff0000:244.6,#ff0000:355.7,#ed00e2
    81669 > center 536.27,535.94,464.54 axis 0,0,0
    81670 
    81671 > color cylindrical #214.1 palette #ff0000:#ff0000:#ed00e2:#ff0000 center
    81672 > 536.27,535.94,464.54 axis 0,0,0
    81673 
    81674 > color cylindrical #214.1 palette
    81675 > 213.6,#ff0000:275.7,#ff0000:337.9,#ff0000:400,#ff40ff center
    81676 > 536.27,535.94,464.54 axis 0,0,0
    81677 
    81678 > color cylindrical #214.1 palette
    81679 > 213.6,#ff0000:275.7,#ff0000:30.9,#ff0000:400,#ff40ff center
    81680 > 536.27,535.94,464.54 axis 0,0,0
    81681 
    81682 > color cylindrical #214.1 palette
    81683 > 213.6,#ff0000:275.7,#ff0000:300.9,#ff0000:400,#ff40ff center
    81684 > 536.27,535.94,464.54 axis 0,0,0
    81685 
    81686 > color cylindrical #214.1 palette
    81687 > 213.6,#ff0000:275.7,#ff0000:280.9,#ff0000:400,#ff40ff center
    81688 > 536.27,535.94,464.54 axis 0,0,0
    81689 
    81690 > color cylindrical #214.1 palette
    81691 > 213.6,#ff0000:235.7,#ff0000:280.9,#ff0000:400,#ff40ff center
    81692 > 536.27,535.94,464.54 axis 0,0,0
    81693 
    81694 > color cylindrical #214.1 palette
    81695 > 213.6,#ff0000:235.7,#ff0000:240.9,#ff0000:400,#ff40ff center
    81696 > 536.27,535.94,464.54 axis 0,0,0
    81697 
    81698 > color cylindrical #214.1 palette
    81699 > 213.6,#ff0000:235.7,#ff0000:250.9,#ff0000:400,#ff40ff center
    81700 > 536.27,535.94,464.54 axis 0,0,0
    81701 
    81702 > color cylindrical #214.1 palette
    81703 > 213.6,#ff0000:235.7,#ff0000:260.9,#ff0000:400,#ff40ff center
    81704 > 536.27,535.94,464.54 axis 0,0,0
    81705 
    81706 [Repeated 2 time(s)]
    81707 
    81708 > color cylindrical #214.1 palette
    81709 > 213.6,#ff0000:235.7,#ff0000:270.9,#ff0000:400,#ff40ff center
    81710 > 536.27,535.94,464.54 axis 0,0,0
    81711 
    81712 [Repeated 2 time(s)]
    81713 
    81714 > color cylindrical #214.1 palette
    81715 > 213.6,#ff0000:235.7,#ff0000:280.9,#ff0000:400,#ff40ff center
    81716 > 536.27,535.94,464.54 axis 0,0,0
    81717 
    81718 [Repeated 1 time(s)]
    81719 
    81720 > color cylindrical #214.1 palette
    81721 > 213.6,#ff0000:235.7,#ff0000:280.9,#ff40ff:400,#ff40ff center
    81722 > 536.27,535.94,464.54 axis 0,0,0
    81723 
    81724 > color cylindrical #214.1 palette
    81725 > 213.6,#ff0000:235.7,#ff0000:380.9,#ff40ff:400,#ff40ff center
    81726 > 536.27,535.94,464.54 axis 0,0,0
    81727 
    81728 > color cylindrical #214.1 palette
    81729 > 213.6,#ff0000:235.7,#ff0000:480.9,#ff40ff:400,#ff40ff center
    81730 > 536.27,535.94,464.54 axis 0,0,0
    81731 
    81732 > color cylindrical #214.1 palette
    81733 > 213.6,#ff0000:235.7,#ff0000:480.9,#ff40ff:500,#ff40ff center
    81734 > 536.27,535.94,464.54 axis 0,0,0
    81735 
    81736 > color cylindrical #214.1 palette
    81737 > 213.6,#ff0000:235.7,#ff0000:450.9,#ff40ff:500,#ff40ff center
    81738 > 536.27,535.94,464.54 axis 0,0,0
    81739 
    81740 > color cylindrical #214.1 palette
    81741 > 213.6,#ff0000:235.7,#ff0000:420.9,#ff40ff:500,#ff40ff center
    81742 > 536.27,535.94,464.54 axis 0,0,0
    81743 
    81744 > color radial #214.1 palette
    81745 > 213.6,#ff0000:235.7,#ff0000:420.9,#ff40ff:500,#ff40ff center
    81746 > 536.27,535.94,464.54
    81747 
    81748 [Repeated 7 time(s)]
    81749 
    81750 > color radial #214.1 palette #ff0000:#ff0000:#ff40ff:#ff40ff center
    81751 > 536.27,535.94,464.54
    81752 
    81753 [Repeated 1 time(s)]
    81754 
    81755 > color radial #214.1 palette
    81756 > 213.6,#ff0000:275.7,#ff0000:337.9,#ff40ff:400,#ff40ff center
    81757 > 536.27,535.94,464.54
    81758 
    81759 [Repeated 1 time(s)]
    81760 
    81761 > color radial #214.1 palette
    81762 > 213.6,#ff0000:285.7,#ff0000:337.9,#ff40ff:400,#ff40ff center
    81763 > 536.27,535.94,464.54
    81764 
    81765 > color radial #214.1 palette
    81766 > 213.6,#ff0000:285,#ff0000:337.9,#ff40ff:400,#ff40ff center
    81767 > 536.27,535.94,464.54
    81768 
    81769 > color radial #214.1 palette
    81770 > 213.6,#ff0000:285,#ff0000:347.9,#ff40ff:400,#ff40ff center
    81771 > 536.27,535.94,464.54
    81772 
    81773 > color radial #214.1 palette
    81774 > 213.6,#ff0000:285,#ff0000:335.9,#ff40ff:400,#ff40ff center
    81775 > 536.27,535.94,464.54
    81776 
    81777 > color radial #214.1 palette
    81778 > 213.6,#ff0000:285,#ff0000:333.9,#ff40ff:400,#ff40ff center
    81779 > 536.27,535.94,464.54
    81780 
    81781 [Repeated 1 time(s)]
    81782 
    81783 > color radial #214.1 palette
    81784 > 213.6,#ff0000:288,#ff0000:333.9,#ff40ff:400,#ff40ff center
    81785 > 536.27,535.94,464.54
    81786 
    81787 > color cylindrical #214.1 palette
    81788 > 213.6,#ff0000:288,#ff0000:333.9,#ff40ff:400,#ff40ff center
    81789 > 536.27,535.94,464.54 axis 0,0,-1
    81790 
    81791 [Repeated 1 time(s)]
    81792 
    81793 > color cylindrical #214.1 palette
    81794 > 213.6,#ff0000:288,#ff0000:333.9,#ff40ff:400,#ff40ff center
    81795 > 536.27,535.94,464.54 axis 0,0,-2
    81796 
    81797 [Repeated 1 time(s)]
    81798 
    81799 > color cylindrical #214.1 palette
    81800 > 213.6,#ff0000:288,#ff0000:333.9,#ff40ff:400,#ff40ff center
    81801 > 536.27,535.94,464.54 axis 0,0,2
    81802 
    81803 [Repeated 1 time(s)]
    81804 
    81805 > color cylindrical #214.1 palette
    81806 > 213.6,#ff0000:288,#ff0000:333.9,#ff40ff:400,#ff40ff center
    81807 > 536.27,535.94,464.54 axis 0,0,5
    81808 
    81809 [Repeated 3 time(s)]
    81810 
    81811 > color cylindrical #214.1 palette
    81812 > 213.6,#ff0000:280,#ff0000:333.9,#ff40ff:400,#ff40ff center
    81813 > 536.27,535.94,464.54 axis 0,0,5
    81814 
    81815 [Repeated 1 time(s)]
    81816 
    81817 > color cylindrical #214.1 palette
    81818 > 213.6,#ff0000:270,#ff0000:333.9,#ff40ff:400,#ff40ff center
    81819 > 536.27,535.94,464.54 axis 0,0,5
    81820 
    81821 > color cylindrical #214.1 palette
    81822 > 213.6,#ff0000:270,#ff0000:333.9,#ff40ff:400,#ff40ff center
    81823 > 536.27,535.94,464.54 axis 0,0,0
    81824 
    81825 [Repeated 1 time(s)]
    81826 
    81827 > color cylindrical #214.1 palette #ff0000:#ff0000:#ff40ff:#ff40ff center
    81828 > 536.27,535.94,464.54 axis 0,0,0
    81829 
    81830 [Repeated 1 time(s)]
    81831 
    81832 > color cylindrical #214.1 palette
    81833 > 213.6,#ff0000:275.7,#ff0000:337.9,#ff40ff:400,#ff40ff center
    81834 > 536.27,535.94,464.54 axis 0,0,0
    81835 
    81836 [Repeated 1 time(s)]
    81837 
    81838 > color cylindrical #214.1 palette #ff0000:#ff0000:#ff40ff:#ff40ff center
    81839 > 536.27,535.94,464.54 axis 0,0,10
    81840 
    81841 > close #2
    81842 
    81843 > ui mousemode right "map eraser"
    81844 
    81845 > color cylindrical #214.1 palette
    81846 > 211.8,#ff0000:274,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81847 > 536.27,535.94,464.54 axis 0,0,0
    81848 
    81849 [Repeated 1 time(s)]
    81850 
    81851 > color cylindrical #214.1 palette
    81852 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81853 > 536.27,535.94,464.54 axis 0,0,0
    81854 
    81855 [Repeated 1 time(s)]
    81856 
    81857 > color cylindrical #215.1 palette
    81858 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81859 > 536.27,535.94,464.54 axis 0,0,0
    81860 
    81861 > show #!215 models
    81862 
    81863 > show #!216 models
    81864 
    81865 > show #!217 models
    81866 
    81867 > color radial #214.1 palette
    81868 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81869 > 536.27,535.94,464.54
    81870 
    81871 [Repeated 1 time(s)]
    81872 
    81873 > color radial #230.1 palette
    81874 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81875 > 536.27,535.94,464.54
    81876 
    81877 > color radial #231.1 palette
    81878 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81879 > 536.27,535.94,464.54
    81880 
    81881 > color radial #229.1 palette
    81882 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81883 > 536.27,535.94,464.54
    81884 
    81885 > color radial #228.1 palette
    81886 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81887 > 536.27,535.94,464.54
    81888 
    81889 > color radial #227.1 palette
    81890 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81891 > 536.27,535.94,464.54
    81892 
    81893 > color radial #226.1 palette
    81894 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81895 > 536.27,535.94,464.54
    81896 
    81897 > color radial #225.1 palette
    81898 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81899 > 536.27,535.94,464.54
    81900 
    81901 > color radial #224.1 palette
    81902 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81903 > 536.27,535.94,464.54
    81904 
    81905 > color radial #223.1 palette
    81906 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81907 > 536.27,535.94,464.54
    81908 
    81909 > color radial #222.1 palette
    81910 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81911 > 536.27,535.94,464.54
    81912 
    81913 > color radial #221.1 palette
    81914 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81915 > 536.27,535.94,464.54
    81916 
    81917 > color radial #220.1 palette
    81918 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81919 > 536.27,535.94,464.54
    81920 
    81921 > color radial #219.1 palette
    81922 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81923 > 536.27,535.94,464.54
    81924 
    81925 > color radial #218.1 palette
    81926 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81927 > 536.27,535.94,464.54
    81928 
    81929 > color radial #217.1 palette
    81930 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81931 > 536.27,535.94,464.54
    81932 
    81933 > color radial #216.1 palette
    81934 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81935 > 536.27,535.94,464.54
    81936 
    81937 > color radial #215.1 palette
    81938 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81939 > 536.27,535.94,464.54
    81940 
    81941 > color radial #214.1 palette
    81942 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    81943 > 536.27,535.94,464.54
    81944 
    81945 > show #!231 models
    81946 
    81947 > color #231 #dbb3e2ff models
    81948 
    81949 > color #231 #ff0002ff models
    81950 
    81951 > hide #!231 models
    81952 
    81953 > show #!231 models
    81954 
    81955 > color radial #231.1 palette
    81956 > 211.8,#dbb3e2:278,#dbb3e2:336.1,#ff0002:398.2,#ff0002 center
    81957 > 534.95,535.83,501.33
    81958 
    81959 > color radial #231.1 palette #dbb3e2:#dbb3e2:#ff0002:#ff0002 center
    81960 > 534.95,535.83,501.33
    81961 
    81962 > color radial #231.1 palette
    81963 > 69.6,#dbb3e2:126.8,#dbb3e2:184,#ff0002:241.3,#ff0002 center
    81964 > 534.95,535.83,501.33
    81965 
    81966 > color radial #231.1 palette
    81967 > 69.6,#f6d9ff:126.8,#f6d9ff:184,#ff0002:241.3,#ff0002 center
    81968 > 534.95,535.83,501.33
    81969 
    81970 [Repeated 1 time(s)]
    81971 
    81972 > color #231 orchid models
    81973 
    81974 > color radial #231.1 palette
    81975 > 69.6,#f6d9ff:126.8,#fbbdff:184,#ff0002:241.3,#ff0002 center
    81976 > 534.95,535.83,501.33
    81977 
    81978 > color radial #231.1 palette
    81979 > 69.6,#fdd5f8:126.8,#fbbdff:184,#ff0002:241.3,#ff0002 center
    81980 > 534.95,535.83,501.33
    81981 
    81982 [Repeated 2 time(s)]
    81983 
    81984 > color radial #231.1 palette
    81985 > 69.6,#fdd5f8:126.8,#fdd5f8:184,#ff0002:241.3,#ff0002 center
    81986 > 534.95,535.83,501.33
    81987 
    81988 > color radial #231.1 palette
    81989 > 69.6,#fdd5f8:136.8,#fdd5f8:184,#ff0002:241.3,#ff0002 center
    81990 > 534.95,535.83,501.33
    81991 
    81992 [Repeated 1 time(s)]
    81993 
    81994 > color radial #231.1 palette
    81995 > 69.6,#fdd5f8:140.8,#fdd5f8:184,#ff0002:241.3,#ff0002 center
    81996 > 534.95,535.83,501.33
    81997 
    81998 [Repeated 1 time(s)]
    81999 
    82000 > color radial #231.1 palette
    82001 > 69.6,#fdd5f8:145.8,#fdd5f8:184,#ff0002:241.3,#ff0002 center
    82002 > 534.95,535.83,501.33
    82003 
    82004 > color radial #231.1 palette
    82005 > 69.6,#fdd5f8:155.8,#fdd5f8:184,#ff0002:241.3,#ff0002 center
    82006 > 534.95,535.83,501.33
    82007 
    82008 > color radial #231.1 palette
    82009 > 69.6,#fdd5f8:160.8,#fdd5f8:184,#ff0002:241.3,#ff0002 center
    82010 > 534.95,535.83,501.33
    82011 
    82012 > color radial #231.1 palette
    82013 > 69.6,#fdd5f8:160.8,#fdd5f8:184,#ed92a9:241.3,#ff0002 center
    82014 > 534.95,535.83,501.33
    82015 
    82016 > color radial #231.1 palette
    82017 > 69.6,#fdd5f8:155.8,#fdd5f8:184,#ed92a9:241.3,#ff0002 center
    82018 > 534.95,535.83,501.33
    82019 
    82020 [Repeated 2 time(s)]
    82021 
    82022 > color radial #231.1 palette
    82023 > 69.6,#fdd5f8:155.8,#fdd5f8:180,#ed92a9:241.3,#ff0002 center
    82024 > 534.95,535.83,501.33
    82025 
    82026 > color radial #231.1 palette
    82027 > 69.6,#fdd5f8:155.8,#fdd5f8:170,#ed92a9:241.3,#ff0002 center
    82028 > 534.95,535.83,501.33
    82029 
    82030 > show #!209 models
    82031 
    82032 > show #!208 models
    82033 
    82034 > show #!207 models
    82035 
    82036 > show #!206 models
    82037 
    82038 > show #!107-205 models
    82039 
    82040 > show #!89 models
    82041 
    82042 > show #!88 models
    82043 
    82044 > show #!4 models
    82045 
    82046 > save /Users/shoichi/Desktop/For_Composition-
    82047 > maps/Cleanup2_Building_Composition.cxs includeMaps true
    82048 
    82049 > view orient
    82050 
    82051 > turn x 90
    82052 
    82053 [Repeated 2 time(s)]
    82054 
    82055 > save /Users/shoichi/Desktop/Composition1.png supersample 2
    82056 > transparentBackground true
    82057 
    82058 > turn x 20
    82059 
    82060 > turn x -20
    82061 
    82062 > turn x 10
    82063 
    82064 > hide #!3 models
    82065 
    82066 > show #!3 models
    82067 
    82068 > hide #!88 models
    82069 
    82070 > show #!82 models
    82071 
    82072 > hide #!82 models
    82073 
    82074 > show #!88 models
    82075 
    82076 > view orient
    82077 
    82078 > turn x 90
    82079 
    82080 [Repeated 2 time(s)]
    82081 
    82082 > turn x 10
    82083 
    82084 > save /Users/shoichi/Desktop/Composition2.png supersample 2
    82085 > transparentBackground true
    82086 
    82087 > turn x -10
    82088 
    82089 > turn y 90
    82090 
    82091 [Repeated 3 time(s)]
    82092 
    82093 > turn y 10
    82094 
    82095 [Repeated 8 time(s)]
    82096 
    82097 > turn x 10
    82098 
    82099 > save /Users/shoichi/Desktop/Composition2.png supersample 2
    82100 > transparentBackground true
    82101 
    82102 > hide #!4 models
    82103 
    82104 > hide #!88 models
    82105 
    82106 > hide #!89 models
    82107 
    82108 > hide #!107-140 models
    82109 
    82110 > hide #!209 models
    82111 
    82112 > turn x 10
    82113 
    82114 > show #!88-140 models
    82115 
    82116 > show #!83 models
    82117 
    82118 > turn x -10
    82119 
    82120 [Repeated 1 time(s)]
    82121 
    82122 > turn x 15
    82123 
    82124 > view name P1
    82125 
    82126 > show #!209 models
    82127 
    82128 > save /Users/shoichi/Desktop/Composition2.png supersample 2
    82129 > transparentBackground true
    82130 
    82131 > hide #!209 models
    82132 
    82133 > hide #!83 models
    82134 
    82135 > hide #!88 models
    82136 
    82137 > hide #!107-140 models
    82138 
    82139 > hide #!175-232 models
    82140 
    82141 > show #!107 models
    82142 
    82143 > show #!108 models
    82144 
    82145 > show #!109 models
    82146 
    82147 > show #!110 models
    82148 
    82149 > show #!111 models
    82150 
    82151 > show #!112 models
    82152 
    82153 > show #!113 models
    82154 
    82155 > show #!114 models
    82156 
    82157 > show #!115 models
    82158 
    82159 > show #!116 models
    82160 
    82161 > show #!117 models
    82162 
    82163 > show #!118 models
    82164 
    82165 > show #!119 models
    82166 
    82167 > show #!120 models
    82168 
    82169 > show #!121 models
    82170 
    82171 > show #!122 models
    82172 
    82173 > hide #!122 models
    82174 
    82175 > show #!122 models
    82176 
    82177 > show #!214 models
    82178 
    82179 > show #!215 models
    82180 
    82181 > show #!216 models
    82182 
    82183 > show #!217 models
    82184 
    82185 > show #!218 models
    82186 
    82187 > show #!219 models
    82188 
    82189 > show #!220 models
    82190 
    82191 > show #!221 models
    82192 
    82193 > show #!222 models
    82194 
    82195 > show #!223 models
    82196 
    82197 > show #!224 models
    82198 
    82199 > show #!225 models
    82200 
    82201 > show #!226 models
    82202 
    82203 > show #!227 models
    82204 
    82205 > show #!228 models
    82206 
    82207 > show #!229 models
    82208 
    82209 > hide #!141-174 models
    82210 
    82211 > show #!230 models
    82212 
    82213 > show #!231 models
    82214 
    82215 > turn x -15
    82216 
    82217 > turn x 20
    82218 
    82219 > turn x 5
    82220 
    82221 > show #!123 models
    82222 
    82223 > view name P2
    82224 
    82225 > show #!175-232 models
    82226 
    82227 > show #!124-174 models
    82228 
    82229 > show #!88 models
    82230 
    82231 > turn x -5
    82232 
    82233 > show #!4 models
    82234 
    82235 > save /Users/shoichi/Desktop/Composition2.png supersample 2
    82236 > transparentBackground true
    82237 
    82238 > hide #!88 models
    82239 
    82240 > hide #!89 models
    82241 
    82242 > hide #!4 models
    82243 
    82244 > hide #!3 models
    82245 
    82246 > hide #!209 models
    82247 
    82248 > hide #!175-232 models
    82249 
    82250 > hide #!107-123 models
    82251 
    82252 > hide #!107-140 models
    82253 
    82254 > save /Users/shoichi/Desktop/Composition_medial.png supersample 2
    82255 > transparentBackground true
    82256 
    82257 > hide #!141-174 models
    82258 
    82259 > show #!107-140 models
    82260 
    82261 > show #!175-191 models
    82262 
    82263 > show #!214-232 models
    82264 
    82265 > select ~sel & ##selected
    82266 
    82267 Nothing selected 
    82268 
    82269 > select ~sel & ##selected
    82270 
    82271 Nothing selected 
    82272 
    82273 > select ~sel & ##selected
    82274 
    82275 Nothing selected 
    82276 
    82277 > select ~sel & ##selected
    82278 
    82279 Nothing selected 
    82280 
    82281 > select ~sel & ##selected
    82282 
    82283 Nothing selected 
    82284 
    82285 > view P2
    82286 
    82287 > turn x 205
    82288 
    82289 > turn x -205
    82290 
    82291 > turn x -20
    82292 
    82293 > view p2
    82294 
    82295 Expected an objects specifier or a view name or a keyword 
    82296 
    82297 > view P2
    82298 
    82299 > view -25
    82300 
    82301 Expected an objects specifier or a view name or a keyword 
    82302 
    82303 > turn x 25
    82304 
    82305 > turn x -25
    82306 
    82307 [Repeated 1 time(s)]
    82308 
    82309 > select add #107
    82310 
    82311 2 models selected 
    82312 
    82313 > select add #108
    82314 
    82315 4 models selected 
    82316 
    82317 > select add #109
    82318 
    82319 6 models selected 
    82320 
    82321 > select add #110
    82322 
    82323 8 models selected 
    82324 
    82325 > select add #111
    82326 
    82327 10 models selected 
    82328 
    82329 > select add #112
    82330 
    82331 12 models selected 
    82332 
    82333 > select add #113
    82334 
    82335 14 models selected 
    82336 
    82337 > select add #115
    82338 
    82339 16 models selected 
    82340 
    82341 > select add #114
    82342 
    82343 18 models selected 
    82344 
    82345 > select add #116
    82346 
    82347 20 models selected 
    82348 
    82349 > select add #117
    82350 
    82351 22 models selected 
    82352 
    82353 > select add #118
    82354 
    82355 24 models selected 
    82356 
    82357 > select add #119
    82358 
    82359 26 models selected 
    82360 
    82361 > select add #120
    82362 
    82363 28 models selected 
    82364 
    82365 > select add #121
    82366 
    82367 30 models selected 
    82368 
    82369 > select add #122
    82370 
    82371 32 models selected 
    82372 
    82373 > ui mousemode right "crop volume"
    82374 
    82375 > volume #232 region 0,0,26,255,255,255
    82376 
    82377 > volume #231 region 3,0,0,255,255,255
    82378 
    82379 > volume #231 region 0,0,0,255,255,255
    82380 
    82381 > select add #123
    82382 
    82383 34 models selected 
    82384 
    82385 > hide #!124-232 models
    82386 
    82387 > volume sel showOutlineBox true
    82388 
    82389 > volume #116 region 0,0,0,199,199,199
    82390 
    82391 > volume #115 region 0,0,0,192,199,199
    82392 
    82393 > volume #116 region 0,0,0,199,199,199
    82394 
    82395 [Repeated 1 time(s)]
    82396 
    82397 > view orient
    82398 
    82399 > turn x 90
    82400 
    82401 [Repeated 2 time(s)]
    82402 
    82403 > volume #120 region 0,0,2,199,199,199
    82404 
    82405 > select clear
    82406 
    82407 > volume #120 region 0,0,61,199,199,199
    82408 
    82409 > volume #121 region 0,0,62,199,199,199
    82410 
    82411 > volume #122 region 0,0,0,199,199,199
    82412 
    82413 [Repeated 1 time(s)]
    82414 
    82415 > volume #119 region 0,0,0,199,199,199
    82416 
    82417 > select clear
    82418 
    82419 > hide #!107 models
    82420 
    82421 > show #!107 models
    82422 
    82423 > hide #!107 models
    82424 
    82425 > hide #!108 models
    82426 
    82427 > hide #!109 models
    82428 
    82429 > hide #!110 models
    82430 
    82431 > hide #!111 models
    82432 
    82433 > hide #!112 models
    82434 
    82435 > hide #!113 models
    82436 
    82437 > hide #!114 models
    82438 
    82439 > hide #!115 models
    82440 
    82441 > hide #!116 models
    82442 
    82443 > hide #!117 models
    82444 
    82445 > hide #!118 models
    82446 
    82447 > hide #!122 models
    82448 
    82449 > show #!122 models
    82450 
    82451 > hide #!123 models
    82452 
    82453 > hide #!122 models
    82454 
    82455 > hide #!119 models
    82456 
    82457 > volume #121 region 0,0,62,199,199,199
    82458 
    82459 > volume #121 region 0,0,62,190,199,199
    82460 
    82461 > volume #121 region 0,0,0,190,199,199
    82462 
    82463 > hide #!120 models
    82464 
    82465 > show #!120 models
    82466 
    82467 > hide #!121 models
    82468 
    82469 > volume #120 region 0,0,0,199,199,199
    82470 
    82471 > show #!121 models
    82472 
    82473 > show #!122 models
    82474 
    82475 > volume #!120-122 showOutlineBox false
    82476 
    82477 > show #!107 models
    82478 
    82479 > show #!108 models
    82480 
    82481 > show #!109 models
    82482 
    82483 > show #!110 models
    82484 
    82485 > show #!111 models
    82486 
    82487 > show #!112 models
    82488 
    82489 > show #!113 models
    82490 
    82491 > show #!114 models
    82492 
    82493 > show #!115 models
    82494 
    82495 > show #!116 models
    82496 
    82497 > show #!118 models
    82498 
    82499 > show #!117 models
    82500 
    82501 > show #!119 models
    82502 
    82503 > show #!123 models
    82504 
    82505 > view P2
    82506 
    82507 > volume #!107-123 showOutlineBox false
    82508 
    82509 > select ~sel & ##selected
    82510 
    82511 Nothing selected 
    82512 
    82513 > view P1
    82514 
    82515 > view P2
    82516 
    82517 > show #!89 models
    82518 
    82519 > hide #!89 models
    82520 
    82521 > hide #!108 models
    82522 
    82523 > hide #!109 models
    82524 
    82525 > hide #!110 models
    82526 
    82527 > hide #!111 models
    82528 
    82529 > hide #!112 models
    82530 
    82531 > hide #!107 models
    82532 
    82533 > hide #!113 models
    82534 
    82535 > hide #!114 models
    82536 
    82537 > hide #!115 models
    82538 
    82539 > hide #!123 models
    82540 
    82541 > hide #!122 models
    82542 
    82543 > hide #!121 models
    82544 
    82545 > hide #!120 models
    82546 
    82547 > hide #!119 models
    82548 
    82549 > hide #!118 models
    82550 
    82551 > hide #!117 models
    82552 
    82553 > volume #116 region 0,0,0,199,199,199
    82554 
    82555 > volume #!116 showOutlineBox true
    82556 
    82557 > volume #116 region 0,0,61,199,199,199
    82558 
    82559 > volume #!116 showOutlineBox false
    82560 
    82561 > show #!107 models
    82562 
    82563 > show #!108 models
    82564 
    82565 > show #!109 models
    82566 
    82567 > show #!110 models
    82568 
    82569 > show #!111 models
    82570 
    82571 > show #!112 models
    82572 
    82573 > show #!113 models
    82574 
    82575 > show #!115 models
    82576 
    82577 > show #!114 models
    82578 
    82579 > show #!117 models
    82580 
    82581 > show #!118 models
    82582 
    82583 > show #!119 models
    82584 
    82585 > show #!120 models
    82586 
    82587 > show #!121 models
    82588 
    82589 > show #!122 models
    82590 
    82591 > show #!123 models
    82592 
    82593 > volume #107-123 region 0,0,61,199,199,199
    82594 
    82595 > view P2
    82596 
    82597 > show #!124 models
    82598 
    82599 > show #!125 models
    82600 
    82601 > show #!126 models
    82602 
    82603 > show #!127 models
    82604 
    82605 > show #!128 models
    82606 
    82607 > show #!129 models
    82608 
    82609 > show #!130 models
    82610 
    82611 > show #!131 models
    82612 
    82613 > show #!132 models
    82614 
    82615 > show #!133 models
    82616 
    82617 > show #!134 models
    82618 
    82619 > show #!135 models
    82620 
    82621 > show #!136 models
    82622 
    82623 > show #!137 models
    82624 
    82625 > show #!138 models
    82626 
    82627 > show #!139 models
    82628 
    82629 > show #!140 models
    82630 
    82631 > show #!175-191 models
    82632 
    82633 > show #!214-232 models
    82634 
    82635 > save /Users/shoichi/Desktop/Composition3_medial.png supersample 2
    82636 > transparentBackground true
    82637 
    82638 > hide #!214-232 models
    82639 
    82640 > hide #!175-191 models
    82641 
    82642 > hide #!107-140 models
    82643 
    82644 > show #!192-208 models
    82645 
    82646 > show #!4 models
    82647 
    82648 > hide #!4 models
    82649 
    82650 > hide #!192 models
    82651 
    82652 > hide #!193 models
    82653 
    82654 > hide #!194 models
    82655 
    82656 > hide #!195 models
    82657 
    82658 > hide #!196 models
    82659 
    82660 > hide #!197 models
    82661 
    82662 > hide #!198 models
    82663 
    82664 > hide #!199 models
    82665 
    82666 > hide #!200 models
    82667 
    82668 > hide #!201 models
    82669 
    82670 > hide #!202 models
    82671 
    82672 > hide #!203 models
    82673 
    82674 > hide #!204 models
    82675 
    82676 > hide #!205 models
    82677 
    82678 > hide #!206 models
    82679 
    82680 > hide #!207 models
    82681 
    82682 > hide #!208 models
    82683 
    82684 > show #!107 models
    82685 
    82686 > hide #!107 models
    82687 
    82688 > show #!118 models
    82689 
    82690 > hide #!118 models
    82691 
    82692 > show #!115 models
    82693 
    82694 > volume #!115 showOutlineBox true
    82695 
    82696 > volume #115 region 0,0,61,190,199,199
    82697 
    82698 > volume #115 region 0,0,0,190,199,199
    82699 
    82700 > volume #115 region 0,0,0,199,199,199
    82701 
    82702 > volume #115 region 0,0,0,199,199,71
    82703 
    82704 > volume #!115 showOutlineBox false
    82705 
    82706 > view P2
    82707 
    82708 > volume #107-123 region 0,0,0,199,199,71
    82709 
    82710 > show #!107 models
    82711 
    82712 > show #!108 models
    82713 
    82714 > show #!109 models
    82715 
    82716 > show #!110 models
    82717 
    82718 > show #!111 models
    82719 
    82720 > show #!112 models
    82721 
    82722 > show #!113 models
    82723 
    82724 > show #!114 models
    82725 
    82726 > show #!116 models
    82727 
    82728 > show #!117 models
    82729 
    82730 > show #!118 models
    82731 
    82732 > show #!119 models
    82733 
    82734 > show #!120 models
    82735 
    82736 > show #!121 models
    82737 
    82738 > show #!122 models
    82739 
    82740 > show #!123 models
    82741 
    82742 > show #!192-208 models
    82743 
    82744 > show #!4 models
    82745 
    82746 > save /Users/shoichi/Desktop/Composition4_medial.png supersample 2
    82747 > transparentBackground true
    82748 
    82749 > save /Users/shoichi/Desktop/For_Composition-
    82750 > maps/Cleanup3_Building_Composition.cxs includeMaps true
    82751 
    82752 ——— End of log from Tue Sep 9 15:35:44 2025 ———
    82753 
    82754 opened ChimeraX session 
    82755 
    82756 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    82757 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    82758 > review/Updated_Figures/09092025/For_Composition-maps/Individual-
    82759 > MOdels/1xPflCD_Cage.pdb"
    82760 
    82761 Chain information for 1xPflCD_Cage.pdb #2 
    82762 --- 
    82763 Chain | Description 
    82764 A D | No description available 
    82765 B E | No description available 
    82766 C F | No description available 
    82767 L X | No description available 
    82768 c | No description available 
    82769  
    82770 
    82771 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    82772 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    82773 > review/Updated_Figures/09092025/For_Composition-maps/Segmented for
    82774 > Compositions/Resegment-PflABCD/1unit_PflABCD.mrc"
    82775 
    82776 Opened 1unit_PflABCD.mrc as #5, grid size 200,200,200, pixel 2.14, shown at
    82777 level 0.0254, step 1, values float32 
    82778 
    82779 > show #!167 models
    82780 
    82781 > select add #5
    82782 
    82783 2 models selected 
    82784 
    82785 > ui mousemode right "translate selected models"
    82786 
    82787 > view matrix models #5,1,0,0,80.692,0,1,0,230.3,0,0,1,221.48
    82788 
    82789 > volume #5 level 0.008421
    82790 
    82791 > ui mousemode right "rotate selected models"
    82792 
    82793 > view matrix models
    82794 > #5,-0.6421,0.50185,-0.57953,470.1,-0.70423,-0.68485,0.1872,606.29,-0.30294,0.52833,0.79316,245.39
    82795 
    82796 > ui mousemode right "translate selected models"
    82797 
    82798 > view matrix models
    82799 > #5,-0.6421,0.50185,-0.57953,483.03,-0.70423,-0.68485,0.1872,692.04,-0.30294,0.52833,0.79316,292.23
    82800 
    82801 > ui mousemode right "rotate selected models"
    82802 
    82803 > view matrix models
    82804 > #5,-0.61177,0.59906,-0.51658,446.98,-0.77868,-0.57101,0.26,672.85,-0.13922,0.56132,0.81581,247.87
    82805 
    82806 > ui mousemode right "translate selected models"
    82807 
    82808 > view matrix models
    82809 > #5,-0.61177,0.59906,-0.51658,427.64,-0.77868,-0.57101,0.26,661.19,-0.13922,0.56132,0.81581,225.95
    82810 
    82811 > ui mousemode right "rotate selected models"
    82812 
    82813 > view matrix models
    82814 > #5,-0.95336,0.20464,-0.22189,496.22,-0.26238,-0.92522,0.27407,608.04,-0.14921,0.31951,0.93576,240.2
    82815 
    82816 > ui mousemode right "translate selected models"
    82817 
    82818 > view matrix models
    82819 > #5,-0.95336,0.20464,-0.22189,525,-0.26238,-0.92522,0.27407,604.74,-0.14921,0.31951,0.93576,250.78
    82820 
    82821 > view matrix models
    82822 > #5,-0.95336,0.20464,-0.22189,510.51,-0.26238,-0.92522,0.27407,600.04,-0.14921,0.31951,0.93576,217.04
    82823 
    82824 > volume #5 level 0.004039
    82825 
    82826 > ui tool show "Fit in Map"
    82827 
    82828 > fitmap #2 inMap #167
    82829 
    82830 Fit molecule 1xPflCD_Cage.pdb (#2) to map 1xPflC.mrc gaussian copy (#167)
    82831 using 16838 atoms 
    82832 average map value = 0, steps = 24 
    82833 shifted from previous position = 0 
    82834 rotated from previous position = 0 degrees 
    82835 atoms outside contour = 16838, contour level = 0.0010738 
    82836  
    82837 Position of 1xPflCD_Cage.pdb (#2) relative to 1xPflC.mrc gaussian copy (#167)
    82838 coordinates: 
    82839 Matrix rotation and translation 
    82840 -0.93089425 -0.36503026 -0.01374048 661.01120682 
    82841 0.36496286 -0.93099409 0.00721828 514.09260469 
    82842 -0.01542720 0.00170469 0.99987954 -232.71151912 
    82843 Axis -0.00755270 0.00231052 0.99996881 
    82844 Axis point 280.98545554 319.62206504 0.00000000 
    82845 Rotation angle (degrees) 158.59192822 
    82846 Shift along axis -236.50885839 
    82847  
    82848 
    82849 > fitmap #2 inMap #167
    82850 
    82851 Fit molecule 1xPflCD_Cage.pdb (#2) to map 1xPflC.mrc gaussian copy (#167)
    82852 using 16838 atoms 
    82853 average map value = 0, steps = 24 
    82854 shifted from previous position = 0 
    82855 rotated from previous position = 0 degrees 
    82856 atoms outside contour = 16838, contour level = 0.0010738 
    82857  
    82858 Position of 1xPflCD_Cage.pdb (#2) relative to 1xPflC.mrc gaussian copy (#167)
    82859 coordinates: 
    82860 Matrix rotation and translation 
    82861 -0.93089425 -0.36503026 -0.01374048 661.01120682 
    82862 0.36496286 -0.93099409 0.00721828 514.09260469 
    82863 -0.01542720 0.00170469 0.99987954 -232.71151912 
    82864 Axis -0.00755270 0.00231052 0.99996881 
    82865 Axis point 280.98545554 319.62206504 0.00000000 
    82866 Rotation angle (degrees) 158.59192822 
    82867 Shift along axis -236.50885839 
    82868  
    82869 
    82870 > fitmap #2 inMap #167
    82871 
    82872 Fit molecule 1xPflCD_Cage.pdb (#2) to map 1xPflC.mrc gaussian copy (#167)
    82873 using 16838 atoms 
    82874 average map value = 0, steps = 24 
    82875 shifted from previous position = 0 
    82876 rotated from previous position = 0 degrees 
    82877 atoms outside contour = 16838, contour level = 0.0010738 
    82878  
    82879 Position of 1xPflCD_Cage.pdb (#2) relative to 1xPflC.mrc gaussian copy (#167)
    82880 coordinates: 
    82881 Matrix rotation and translation 
    82882 -0.93089425 -0.36503026 -0.01374048 661.01120682 
    82883 0.36496286 -0.93099409 0.00721828 514.09260469 
    82884 -0.01542720 0.00170469 0.99987954 -232.71151912 
    82885 Axis -0.00755270 0.00231052 0.99996881 
    82886 Axis point 280.98545554 319.62206504 0.00000000 
    82887 Rotation angle (degrees) 158.59192822 
    82888 Shift along axis -236.50885839 
    82889  
    82890 
    82891 > view matrix models
    82892 > #5,-0.95336,0.20464,-0.22189,513.13,-0.26238,-0.92522,0.27407,604.03,-0.14921,0.31951,0.93576,224.15
    82893 
    82894 > hide #2 models
    82895 
    82896 > show #2 models
    82897 
    82898 > fitmap #5 inMap #167
    82899 
    82900 Fit map 1unit_PflABCD.mrc in map 1xPflC.mrc gaussian copy using 190573 points 
    82901 correlation = 0.5216, correlation about mean = 0.3123, overlap = 47.08 
    82902 steps = 344, shift = 27.3, angle = 21 degrees 
    82903  
    82904 Position of 1unit_PflABCD.mrc (#5) relative to 1xPflC.mrc gaussian copy (#167)
    82905 coordinates: 
    82906 Matrix rotation and translation 
    82907 0.99999427 -0.00337820 -0.00022407 0.72474418 
    82908 0.00337640 0.99996544 -0.00759714 1.76410533 
    82909 0.00024973 0.00759634 0.99997112 -1.22720418 
    82910 Axis 0.91339733 -0.02848334 0.40607144 
    82911 Axis point 0.00000000 168.49545384 231.86504758 
    82912 Rotation angle (degrees) 0.47653568 
    82913 Shift along axis 0.11339922 
    82914  
    82915 
    82916 > fitmap #5 inMap #167
    82917 
    82918 Fit map 1unit_PflABCD.mrc in map 1xPflC.mrc gaussian copy using 190573 points 
    82919 correlation = 0.5216, correlation about mean = 0.3123, overlap = 47.08 
    82920 steps = 348, shift = 0.0392, angle = 0.0232 degrees 
    82921  
    82922 Position of 1unit_PflABCD.mrc (#5) relative to 1xPflC.mrc gaussian copy (#167)
    82923 coordinates: 
    82924 Matrix rotation and translation 
    82925 0.99999449 -0.00329623 -0.00039375 0.75967208 
    82926 0.00329329 0.99996837 -0.00723968 1.66087378 
    82927 0.00041760 0.00723834 0.99997372 -1.20368478 
    82928 Axis 0.90898107 -0.05093893 0.41371324 
    82929 Axis point 0.00000000 173.29551538 229.41493132 
    82930 Rotation angle (degrees) 0.45630135 
    82931 Shift along axis 0.10794406 
    82932  
    82933 
    82934 > hide #!167 models
    82935 
    82936 > show #!167 models
    82937 
    82938 > hide #!167 models
    82939 
    82940 > show #!167 models
    82941 
    82942 > hide #!167 models
    82943 
    82944 > hide #!116 models
    82945 
    82946 > show #!116 models
    82947 
    82948 > hide #!5 models
    82949 
    82950 > show #!5 models
    82951 
    82952 > hide #!107-208 models
    82953 
    82954 > hide #!4 models
    82955 
    82956 > select subtract #5
    82957 
    82958 Nothing selected 
    82959 
    82960 > hide #2 models
    82961 
    82962 > show #!116 models
    82963 
    82964 > hide #!5 models
    82965 
    82966 > ui mousemode right "crop volume"
    82967 
    82968 > volume #!116 showOutlineBox true
    82969 
    82970 > volume #116 region 0,0,0,199,199,199
    82971 
    82972 > volume #!116 showOutlineBox false
    82973 
    82974 > show #!5 models
    82975 
    82976 > fitmap #5 inMap #116
    82977 
    82978 Fit map 1unit_PflABCD.mrc in map Single_Cage_unit.mrc gaussian copy using
    82979 190573 points 
    82980 correlation = 0.3822, correlation about mean = 0.2659, overlap = 25.07 
    82981 steps = 152, shift = 5.38, angle = 3.77 degrees 
    82982  
    82983 Position of 1unit_PflABCD.mrc (#5) relative to Single_Cage_unit.mrc gaussian
    82984 copy (#116) coordinates: 
    82985 Matrix rotation and translation 
    82986 0.99999606 0.00065533 0.00272954 -0.53391967 
    82987 -0.00065318 0.99999948 -0.00078927 0.34391796 
    82988 -0.00273006 0.00078748 0.99999597 1.00968152 
    82989 Axis 0.27038883 0.93623691 -0.22438877 
    82990 Axis point 365.53335285 0.00000000 191.28738668 
    82991 Rotation angle (degrees) 0.16705855 
    82992 Shift along axis -0.04893842 
    82993  
    82994 
    82995 > fitmap #5 inMap #116
    82996 
    82997 Fit map 1unit_PflABCD.mrc in map Single_Cage_unit.mrc gaussian copy using
    82998 190573 points 
    82999 correlation = 0.3822, correlation about mean = 0.2659, overlap = 25.07 
    83000 steps = 88, shift = 0.0155, angle = 0.00166 degrees 
    83001  
    83002 Position of 1unit_PflABCD.mrc (#5) relative to Single_Cage_unit.mrc gaussian
    83003 copy (#116) coordinates: 
    83004 Matrix rotation and translation 
    83005 0.99999613 0.00063824 0.00270904 -0.52681767 
    83006 -0.00063614 0.99999950 -0.00077787 0.32314980 
    83007 -0.00270953 0.00077615 0.99999603 1.01356127 
    83008 Axis 0.26889614 0.93758759 -0.22050937 
    83009 Axis point 368.73544003 0.00000000 188.82225704 
    83010 Rotation angle (degrees) 0.16556403 
    83011 Shift along axis -0.06217775 
    83012  
    83013 
    83014 > show #!169 models
    83015 
    83016 > hide #!169 models
    83017 
    83018 > show #!170 models
    83019 
    83020 > hide #!170 models
    83021 
    83022 > show #!168 models
    83023 
    83024 > hide #!168 models
    83025 
    83026 > show #!167 models
    83027 
    83028 > hide #!167 models
    83029 
    83030 > hide #!5 models
    83031 
    83032 > show #!5 models
    83033 
    83034 > hide #!5 models
    83035 
    83036 > show #!5 models
    83037 
    83038 > show #2 models
    83039 
    83040 > hide #!116 models
    83041 
    83042 > select add #2
    83043 
    83044 16838 atoms, 17164 bonds, 2046 residues, 1 model selected 
    83045 
    83046 > hide sel atoms
    83047 
    83048 > show sel cartoons
    83049 
    83050 > ui mousemode right "translate selected models"
    83051 
    83052 > view matrix models #2,1,0,0,-60.581,0,1,0,237.84,0,0,1,277.4
    83053 
    83054 > ui mousemode right "rotate selected models"
    83055 
    83056 > view matrix models
    83057 > #2,-0.96014,-0.24492,-0.13469,614.58,0.2033,-0.94262,0.26485,691.24,-0.19182,0.22691,0.95484,276.75
    83058 
    83059 > ui mousemode right "translate selected models"
    83060 
    83061 > view matrix models
    83062 > #2,-0.96014,-0.24492,-0.13469,589.79,0.2033,-0.94262,0.26485,626.99,-0.19182,0.22691,0.95484,242.85
    83063 
    83064 > color #5 #b2b2b284 models
    83065 
    83066 > color #5 #424242ff models
    83067 
    83068 > color #5 #42424259 models
    83069 
    83070 > color #5 #011993ff models
    83071 
    83072 > color #5 #0119937e models
    83073 
    83074 > color #5 #919191ff models
    83075 
    83076 > color #5 #919191a6 models
    83077 
    83078 > view matrix models
    83079 > #2,-0.96014,-0.24492,-0.13469,585.55,0.2033,-0.94262,0.26485,622.04,-0.19182,0.22691,0.95484,245.15
    83080 
    83081 > view matrix models
    83082 > #2,-0.96014,-0.24492,-0.13469,585.03,0.2033,-0.94262,0.26485,611.84,-0.19182,0.22691,0.95484,242.16
    83083 
    83084 > ui mousemode right "rotate selected models"
    83085 
    83086 > view matrix models
    83087 > #2,-0.95226,-0.27654,-0.12934,590.84,0.26842,-0.96023,0.076866,639.34,-0.14545,0.03848,0.98862,276.56
    83088 
    83089 > ui mousemode right "translate selected models"
    83090 
    83091 > view matrix models
    83092 > #2,-0.95226,-0.27654,-0.12934,585.15,0.26842,-0.96023,0.076866,637.34,-0.14545,0.03848,0.98862,271.71
    83093 
    83094 > ui mousemode right "rotate selected models"
    83095 
    83096 > view matrix models
    83097 > #2,-0.95679,-0.2842,0.061569,546.71,0.29013,-0.94724,0.13623,614.1,0.019605,0.1482,0.98876,191.12
    83098 
    83099 > fitmap #2 inMap #5
    83100 
    83101 Fit molecule 1xPflCD_Cage.pdb (#2) to map 1unit_PflABCD.mrc (#5) using 16838
    83102 atoms 
    83103 average map value = 0.01933, steps = 168 
    83104 shifted from previous position = 7.72 
    83105 rotated from previous position = 18.1 degrees 
    83106 atoms outside contour = 5997, contour level = 0.0040392 
    83107  
    83108 Position of 1xPflCD_Cage.pdb (#2) relative to 1unit_PflABCD.mrc (#5)
    83109 coordinates: 
    83110 Matrix rotation and translation 
    83111 0.93390400 0.35699461 0.01944616 -83.87195291 
    83112 -0.35735917 0.93374270 0.02046929 -6.42039720 
    83113 -0.01085029 -0.02606561 0.99960134 13.41569388 
    83114 Axis -0.06494673 0.04228343 -0.99699249 
    83115 Axis point -58.81330121 225.54168847 0.00000000 
    83116 Rotation angle (degrees) 20.99302791 
    83117 Shift along axis -8.19961325 
    83118  
    83119 
    83120 > fitmap #2 inMap #5
    83121 
    83122 Fit molecule 1xPflCD_Cage.pdb (#2) to map 1unit_PflABCD.mrc (#5) using 16838
    83123 atoms 
    83124 average map value = 0.01933, steps = 76 
    83125 shifted from previous position = 0.0902 
    83126 rotated from previous position = 0.154 degrees 
    83127 atoms outside contour = 6009, contour level = 0.0040392 
    83128  
    83129 Position of 1xPflCD_Cage.pdb (#2) relative to 1unit_PflABCD.mrc (#5)
    83130 coordinates: 
    83131 Matrix rotation and translation 
    83132 0.93466237 0.35494294 0.02053659 -83.73886216 
    83133 -0.35535012 0.93448287 0.02163452 -7.57451421 
    83134 -0.01151208 -0.02751865 0.99955499 14.08003530 
    83135 Axis -0.06896631 0.04496716 -0.99660504 
    83136 Axis point -61.93151124 226.19228646 0.00000000 
    83137 Rotation angle (degrees) 20.87659476 
    83138 Shift along axis -8.59767797 
    83139  
    83140 
    83141 > fitmap #2 inMap #5
    83142 
    83143 Fit molecule 1xPflCD_Cage.pdb (#2) to map 1unit_PflABCD.mrc (#5) using 16838
    83144 atoms 
    83145 average map value = 0.01933, steps = 48 
    83146 shifted from previous position = 0.0214 
    83147 rotated from previous position = 0.0103 degrees 
    83148 atoms outside contour = 6008, contour level = 0.0040392 
    83149  
    83150 Position of 1xPflCD_Cage.pdb (#2) relative to 1unit_PflABCD.mrc (#5)
    83151 coordinates: 
    83152 Matrix rotation and translation 
    83153 0.93469030 0.35486797 0.02056115 -83.72895675 
    83154 -0.35527402 0.93451546 0.02147615 -7.55397195 
    83155 -0.01159352 -0.02737840 0.99955790 14.06270804 
    83156 Axis -0.06856333 0.04512642 -0.99662564 
    83157 Axis point -61.86572666 226.22279870 0.00000000 
    83158 Rotation angle (degrees) 20.87149527 
    83159 Shift along axis -8.61540333 
    83160  
    83161 
    83162 > fitmap #2 inMap #5
    83163 
    83164 Fit molecule 1xPflCD_Cage.pdb (#2) to map 1unit_PflABCD.mrc (#5) using 16838
    83165 atoms 
    83166 average map value = 0.01933, steps = 56 
    83167 shifted from previous position = 0.0107 
    83168 rotated from previous position = 0.0116 degrees 
    83169 atoms outside contour = 6009, contour level = 0.0040392 
    83170  
    83171 Position of 1xPflCD_Cage.pdb (#2) relative to 1unit_PflABCD.mrc (#5)
    83172 coordinates: 
    83173 Matrix rotation and translation 
    83174 0.93473343 0.35475057 0.02062632 -83.71657322 
    83175 -0.35516013 0.93455536 0.02162309 -7.63854291 
    83176 -0.01160564 -0.02753747 0.99955339 14.11922303 
    83177 Axis -0.06901274 0.04524798 -0.99658911 
    83178 Axis point -62.09609546 226.24343703 0.00000000 
    83179 Rotation angle (degrees) 20.86518068 
    83180 Shift along axis -8.63918276 
    83181  
    83182 
    83183 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    83184 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    83185 > review/Updated_Figures/09092025/For_Composition-maps/Individual-
    83186 > MOdels/3XPflAB_FlgY.pdb"
    83187 
    83188 Chain information for 3XPflAB_FlgY.pdb #6 
    83189 --- 
    83190 Chain | Description 
    83191 BN BO BV BW BX BY | No description available 
    83192 d j l | No description available 
    83193 e i k m | No description available 
    83194 n r s | No description available 
    83195  
    83196 
    83197 > select add #6
    83198 
    83199 63449 atoms, 64516 bonds, 4 pseudobonds, 7818 residues, 3 models selected 
    83200 
    83201 > select subtract #2
    83202 
    83203 46611 atoms, 47352 bonds, 4 pseudobonds, 5772 residues, 2 models selected 
    83204 
    83205 > hide sel atoms
    83206 
    83207 > show sel cartoons
    83208 
    83209 > view matrix models
    83210 > #6,-0.85325,-0.37765,-0.35965,473.03,0.36819,0.052161,-0.92829,359.54,0.36933,-0.92448,0.094543,348.99
    83211 
    83212 > select add #2
    83213 
    83214 63449 atoms, 64516 bonds, 4 pseudobonds, 7818 residues, 3 models selected 
    83215 
    83216 > select subtract #2
    83217 
    83218 46611 atoms, 47352 bonds, 4 pseudobonds, 5772 residues, 2 models selected 
    83219 
    83220 > select add #2
    83221 
    83222 63449 atoms, 64516 bonds, 4 pseudobonds, 7818 residues, 3 models selected 
    83223 
    83224 > show sel surfaces
    83225 
    83226 [Repeated 1 time(s)]
    83227 
    83228 > select subtract #2
    83229 
    83230 46611 atoms, 47352 bonds, 4 pseudobonds, 5772 residues, 27 models selected 
    83231 
    83232 > hide sel surfaces
    83233 
    83234 > ui mousemode right "translate selected models"
    83235 
    83236 > view matrix models
    83237 > #6,-0.85325,-0.37765,-0.35965,683.92,0.36819,0.052161,-0.92829,755.71,0.36933,-0.92448,0.094543,627.45
    83238 
    83239 > hide #!5 models
    83240 
    83241 > select subtract #6
    83242 
    83243 16 models selected 
    83244 
    83245 > show #!220 models
    83246 
    83247 > hide #!220 models
    83248 
    83249 > show #!221 models
    83250 
    83251 > show #!220 models
    83252 
    83253 > hide #!221 models
    83254 
    83255 > show #!219 models
    83256 
    83257 > hide #!220 models
    83258 
    83259 > show #!221 models
    83260 
    83261 > hide #!219 models
    83262 
    83263 > show #!222 models
    83264 
    83265 > hide #!221 models
    83266 
    83267 > select add #6
    83268 
    83269 46611 atoms, 47352 bonds, 4 pseudobonds, 5772 residues, 2 models selected 
    83270 
    83271 > ui mousemode right "rotate selected models"
    83272 
    83273 > view matrix models
    83274 > #6,-0.93213,-0.35311,0.080327,579.82,0.34092,-0.93047,-0.13417,747.47,0.12212,-0.097678,0.9877,280.21
    83275 
    83276 > view matrix models
    83277 > #6,-0.99919,0.022167,0.033662,530.26,-0.025248,-0.99525,-0.094066,810.62,0.031416,-0.09484,0.995,292.87
    83278 
    83279 > select subtract #6
    83280 
    83281 16 models selected 
    83282 
    83283 > select add #6.16
    83284 
    83285 5071 atoms, 621 residues, 1 model selected 
    83286 
    83287 > select subtract #6.16
    83288 
    83289 1 model selected 
    83290 
    83291 > select add #6.15
    83292 
    83293 5071 atoms, 621 residues, 1 model selected 
    83294 
    83295 > select subtract #6.15
    83296 
    83297 1 model selected 
    83298 
    83299 > select add #6.17
    83300 
    83301 5071 atoms, 621 residues, 1 model selected 
    83302 
    83303 > select add #6.14
    83304 
    83305 10174 atoms, 1254 residues, 2 models selected 
    83306 
    83307 > select add #6.7
    83308 
    83309 11409 atoms, 1409 residues, 3 models selected 
    83310 
    83311 > select add #6.6
    83312 
    83313 12644 atoms, 1564 residues, 4 models selected 
    83314 
    83315 > select add #6.8
    83316 
    83317 13836 atoms, 1713 residues, 5 models selected 
    83318 
    83319 > select subtract #6.8
    83320 
    83321 12644 atoms, 1564 residues, 6 models selected 
    83322 
    83323 > select add #6.11
    83324 
    83325 13836 atoms, 1713 residues, 5 models selected 
    83326 
    83327 > select subtract #6.11
    83328 
    83329 12644 atoms, 1564 residues, 6 models selected 
    83330 
    83331 > select add #6.13
    83332 
    83333 13836 atoms, 1713 residues, 5 models selected 
    83334 
    83335 > save /Users/shoichi/Desktop/1xSpoke_CJ_Motor.pdb selectedOnly true
    83336 
    83337 > hide #!6 models
    83338 
    83339 > select add #6
    83340 
    83341 46611 atoms, 47352 bonds, 4 pseudobonds, 5772 residues, 7 models selected 
    83342 
    83343 > select subtract #6
    83344 
    83345 16 models selected 
    83346 
    83347 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    83348 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    83349 > review/Updated_Figures/09092025/For_Composition-maps/Individual-
    83350 > MOdels/1xSpoke_CJ_Motor.pdb"
    83351 
    83352 Chain information for 1xSpoke_CJ_Motor.pdb #7 
    83353 --- 
    83354 Chain | Description 
    83355 BX BY | No description available 
    83356 l | No description available 
    83357 m | No description available 
    83358 s | No description available 
    83359  
    83360 
    83361 > select add #7
    83362 
    83363 13836 atoms, 14052 bonds, 1 pseudobond, 1713 residues, 2 models selected 
    83364 
    83365 > hide sel atoms
    83366 
    83367 > show sel cartoons
    83368 
    83369 > ui mousemode right "translate selected models"
    83370 
    83371 > view matrix models #7,1,0,0,-54.012,0,1,0,-20.553,0,0,1,-29.087
    83372 
    83373 > ui mousemode right "rotate selected models"
    83374 
    83375 > view matrix models
    83376 > #7,0.99857,-0.053266,-0.0039696,-22.221,0.053222,0.99853,-0.010383,-33.881,0.0045168,0.010157,0.99994,-36.281
    83377 
    83378 > ui mousemode right "translate selected models"
    83379 
    83380 > view matrix models
    83381 > #7,0.99857,-0.053266,-0.0039696,-17.363,0.053222,0.99853,-0.010383,-44.843,0.0045168,0.010157,0.99994,-42.768
    83382 
    83383 > fitmap #7 inMap #222
    83384 
    83385 Fit molecule 1xSpoke_CJ_Motor.pdb (#7) to map PflAB_wout_FlgYoverlap.mrc copy
    83386 gaussian copy (#222) using 13836 atoms 
    83387 average map value = 0.02438, steps = 204 
    83388 shifted from previous position = 6.65 
    83389 rotated from previous position = 6.75 degrees 
    83390 atoms outside contour = 4993, contour level = 0.0004499 
    83391  
    83392 Position of 1xSpoke_CJ_Motor.pdb (#7) relative to PflAB_wout_FlgYoverlap.mrc
    83393 copy gaussian copy (#222) coordinates: 
    83394 Matrix rotation and translation 
    83395 -0.99965128 -0.02618670 0.00340238 556.96158410 
    83396 0.02589175 -0.99730701 -0.06861736 808.84662249 
    83397 0.00519008 -0.06850534 0.99763725 -240.57212998 
    83398 Axis 0.00214975 -0.03430677 0.99940904 
    83399 Axis point 273.52667764 403.92860329 0.00000000 
    83400 Rotation angle (degrees) 178.50701132 
    83401 Shift along axis -266.98154610 
    83402  
    83403 
    83404 > fitmap #7 inMap #222
    83405 
    83406 Fit molecule 1xSpoke_CJ_Motor.pdb (#7) to map PflAB_wout_FlgYoverlap.mrc copy
    83407 gaussian copy (#222) using 13836 atoms 
    83408 average map value = 0.02438, steps = 44 
    83409 shifted from previous position = 0.0144 
    83410 rotated from previous position = 0.00619 degrees 
    83411 atoms outside contour = 4992, contour level = 0.0004499 
    83412  
    83413 Position of 1xSpoke_CJ_Motor.pdb (#7) relative to PflAB_wout_FlgYoverlap.mrc
    83414 copy gaussian copy (#222) coordinates: 
    83415 Matrix rotation and translation 
    83416 -0.99965351 -0.02609545 0.00344778 556.88186534 
    83417 0.02579779 -0.99731191 -0.06858150 808.85550471 
    83418 0.00522817 -0.06846880 0.99763956 -240.59375219 
    83419 Axis 0.00217063 -0.03428859 0.99940962 
    83420 Axis point 273.50781632 403.92144783 0.00000000 
    83421 Rotation angle (degrees) 178.51232305 
    83422 Shift along axis -266.97744043 
    83423  
    83424 
    83425 > fitmap #7 inMap #222
    83426 
    83427 Fit molecule 1xSpoke_CJ_Motor.pdb (#7) to map PflAB_wout_FlgYoverlap.mrc copy
    83428 gaussian copy (#222) using 13836 atoms 
    83429 average map value = 0.02438, steps = 48 
    83430 shifted from previous position = 0.0296 
    83431 rotated from previous position = 0.0109 degrees 
    83432 atoms outside contour = 4995, contour level = 0.0004499 
    83433  
    83434 Position of 1xSpoke_CJ_Motor.pdb (#7) relative to PflAB_wout_FlgYoverlap.mrc
    83435 copy gaussian copy (#222) coordinates: 
    83436 Matrix rotation and translation 
    83437 -0.99964881 -0.02627730 0.00342810 556.97440083 
    83438 0.02598082 -0.99731057 -0.06853194 808.79029165 
    83439 0.00521972 -0.06841881 0.99764303 -240.62901755 
    83440 Axis 0.00216360 -0.03426374 0.99941048 
    83441 Axis point 273.51713513 403.91728791 0.00000000 
    83442 Rotation angle (degrees) 178.50186152 
    83443 Shift along axis -266.99427237 
    83444  
    83445 
    83446 > show #!231 models
    83447 
    83448 > hide #!231 models
    83449 
    83450 > show #!231 models
    83451 
    83452 > hide #!231 models
    83453 
    83454 > select clear
    83455 
    83456 > save /Users/shoichi/Desktop/For_Composition-
    83457 > maps/Building_Whole_Model_09102025.cxs includeMaps true
    83458 
    83459 ——— End of log from Wed Sep 10 09:47:44 2025 ———
    83460 
    83461 opened ChimeraX session 
    83462 
    83463 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    83464 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    83465 > review/Updated_Figures/09092025/For_Composition-maps/Individual-
    83466 > MOdels/CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb"
    83467 
    83468 Chain information for CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb 
    83469 --- 
    83470 Chain | Description 
    83471 8.2/A 8.2/B 8.2/C 8.2/D 8.2/E | No description available 
    83472 8.3/A 8.3/B 8.3/C 8.3/D 8.3/E 8.3/F 8.3/G 8.3/H 8.3/I 8.3/J | No description available 
    83473 8.1/K | No description available 
    83474 8.1/L | No description available 
    83475  
    83476 
    83477 > show #!5 models
    83478 
    83479 > hide #!222 models
    83480 
    83481 > select add #8
    83482 
    83483 22449 atoms, 22826 bonds, 2863 residues, 4 models selected 
    83484 
    83485 > hide sel atoms
    83486 
    83487 > show sel cartoons
    83488 
    83489 > view matrix models #8,1,0,0,-1.3908,0,1,0,28.13,0,0,1,-68.149
    83490 
    83491 > view matrix models #8,1,0,0,-79.74,0,1,0,194.81,0,0,1,-74.266
    83492 
    83493 > view matrix models #8,1,0,0,-53.901,0,1,0,217.25,0,0,1,-20.022
    83494 
    83495 > view matrix models #8,1,0,0,-90.497,0,1,0,182.48,0,0,1,-19.698
    83496 
    83497 > view matrix models #8,1,0,0,-100.46,0,1,0,189.34,0,0,1,-6.9565
    83498 
    83499 > combine #8
    83500 
    83501 Remapping chain ID 'A' in CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb #8.3 to 'M' 
    83502 Remapping chain ID 'B' in CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb #8.3 to 'N' 
    83503 Remapping chain ID 'C' in CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb #8.3 to 'O' 
    83504 Remapping chain ID 'D' in CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb #8.3 to 'P' 
    83505 Remapping chain ID 'E' in CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb #8.3 to 'Q' 
    83506 
    83507 > select subtract #8
    83508 
    83509 Nothing selected 
    83510 
    83511 > select add #9
    83512 
    83513 22449 atoms, 22826 bonds, 2863 residues, 1 model selected 
    83514 
    83515 > ui tool show "Fit in Map"
    83516 
    83517 > fitmap #9 inMap #5
    83518 
    83519 Fit molecule combination (#9) to map 1unit_PflABCD.mrc (#5) using 22449 atoms 
    83520 average map value = 0.01753, steps = 376 
    83521 shifted from previous position = 3.05 
    83522 rotated from previous position = 47.8 degrees 
    83523 atoms outside contour = 6935, contour level = 0.0040392 
    83524  
    83525 Position of combination (#9) relative to 1unit_PflABCD.mrc (#5) coordinates: 
    83526 Matrix rotation and translation 
    83527 -0.37231233 -0.92574324 -0.06620400 689.67970535 
    83528 0.92810605 -0.37123742 -0.02831844 -45.51260744 
    83529 0.00163820 -0.07198764 0.99740417 -211.57576799 
    83530 Axis -0.02353369 -0.03656071 0.99905429 
    83531 Axis point 360.53272668 204.80726333 0.00000000 
    83532 Rotation angle (degrees) 111.90524931 
    83533 Shift along axis -225.94241130 
    83534  
    83535 
    83536 > fitmap #9 inMap #5
    83537 
    83538 Fit molecule combination (#9) to map 1unit_PflABCD.mrc (#5) using 22449 atoms 
    83539 average map value = 0.01753, steps = 44 
    83540 shifted from previous position = 0.0386 
    83541 rotated from previous position = 0.201 degrees 
    83542 atoms outside contour = 6938, contour level = 0.0040392 
    83543  
    83544 Position of combination (#9) relative to 1unit_PflABCD.mrc (#5) coordinates: 
    83545 Matrix rotation and translation 
    83546 -0.36905755 -0.92703861 -0.06630186 689.01362618 
    83547 0.92940486 -0.36798102 -0.02822339 -47.00421936 
    83548 0.00176635 -0.07203732 0.99740037 -211.59378907 
    83549 Axis -0.02357860 -0.03663111 0.99905066 
    83550 Axis point 360.77496452 204.70035063 0.00000000 
    83551 Rotation angle (degrees) 111.70446120 
    83552 Shift along axis -225.91707373 
    83553  
    83554 
    83555 > hide #!8 models
    83556 
    83557 > select subtract #9
    83558 
    83559 Nothing selected 
    83560 
    83561 > show #!3 models
    83562 
    83563 > view orient
    83564 
    83565 > sym #9 C17 copies true center #3
    83566 
    83567 Made 17 copies for combination symmetry C17 
    83568 
    83569 > close #10
    83570 
    83571 > show #!8 models
    83572 
    83573 > select add #8.3
    83574 
    83575 8580 atoms, 8710 bonds, 1070 residues, 1 model selected 
    83576 
    83577 > select subtract #8.3
    83578 
    83579 Nothing selected 
    83580 
    83581 > select add #8.1
    83582 
    83583 4099 atoms, 4171 bonds, 518 residues, 1 model selected 
    83584 
    83585 > select subtract #8.1
    83586 
    83587 Nothing selected 
    83588 
    83589 > select add #8.2
    83590 
    83591 9770 atoms, 9945 bonds, 1275 residues, 1 model selected 
    83592 
    83593 > color #8.2 #a69b32ff models
    83594 
    83595 > color #8.1 #b86006ff models
    83596 
    83597 > color #8.3 #e2cf7bff models
    83598 
    83599 > select clear
    83600 
    83601 > close #9
    83602 
    83603 > combine #8
    83604 
    83605 Remapping chain ID 'A' in CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb #8.3 to 'M' 
    83606 Remapping chain ID 'B' in CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb #8.3 to 'N' 
    83607 Remapping chain ID 'C' in CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb #8.3 to 'O' 
    83608 Remapping chain ID 'D' in CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb #8.3 to 'P' 
    83609 Remapping chain ID 'E' in CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb #8.3 to 'Q' 
    83610 
    83611 > hide #!8 models
    83612 
    83613 > fitmap #9 inMap #5
    83614 
    83615 Fit molecule combination (#9) to map 1unit_PflABCD.mrc (#5) using 22449 atoms 
    83616 average map value = 0.01753, steps = 376 
    83617 shifted from previous position = 3.05 
    83618 rotated from previous position = 47.8 degrees 
    83619 atoms outside contour = 6935, contour level = 0.0040392 
    83620  
    83621 Position of combination (#9) relative to 1unit_PflABCD.mrc (#5) coordinates: 
    83622 Matrix rotation and translation 
    83623 -0.37231233 -0.92574324 -0.06620400 689.67970535 
    83624 0.92810605 -0.37123742 -0.02831844 -45.51260744 
    83625 0.00163820 -0.07198764 0.99740417 -211.57576799 
    83626 Axis -0.02353369 -0.03656071 0.99905429 
    83627 Axis point 360.53272668 204.80726333 0.00000000 
    83628 Rotation angle (degrees) 111.90524931 
    83629 Shift along axis -225.94241130 
    83630  
    83631 
    83632 > fitmap #9 inMap #5
    83633 
    83634 Fit molecule combination (#9) to map 1unit_PflABCD.mrc (#5) using 22449 atoms 
    83635 average map value = 0.01753, steps = 44 
    83636 shifted from previous position = 0.0386 
    83637 rotated from previous position = 0.201 degrees 
    83638 atoms outside contour = 6938, contour level = 0.0040392 
    83639  
    83640 Position of combination (#9) relative to 1unit_PflABCD.mrc (#5) coordinates: 
    83641 Matrix rotation and translation 
    83642 -0.36905755 -0.92703861 -0.06630186 689.01362618 
    83643 0.92940486 -0.36798102 -0.02822339 -47.00421936 
    83644 0.00176635 -0.07203732 0.99740037 -211.59378907 
    83645 Axis -0.02357860 -0.03663111 0.99905066 
    83646 Axis point 360.77496452 204.70035063 0.00000000 
    83647 Rotation angle (degrees) 111.70446120 
    83648 Shift along axis -225.91707373 
    83649  
    83650 
    83651 > hide #!7 models
    83652 
    83653 > show #!7 models
    83654 
    83655 > split #7
    83656 
    83657 Split 1xSpoke_CJ_Motor.pdb (#7) into 5 models 
    83658 Chain information for 1xSpoke_CJ_Motor.pdb BX #7.1 
    83659 --- 
    83660 Chain | Description 
    83661 BX | No description available 
    83662  
    83663 Chain information for 1xSpoke_CJ_Motor.pdb BY #7.2 
    83664 --- 
    83665 Chain | Description 
    83666 BY | No description available 
    83667  
    83668 Chain information for 1xSpoke_CJ_Motor.pdb l #7.3 
    83669 --- 
    83670 Chain | Description 
    83671 l | No description available 
    83672  
    83673 Chain information for 1xSpoke_CJ_Motor.pdb m #7.4 
    83674 --- 
    83675 Chain | Description 
    83676 m | No description available 
    83677  
    83678 Chain information for 1xSpoke_CJ_Motor.pdb s #7.5 
    83679 --- 
    83680 Chain | Description 
    83681 s | No description available 
    83682  
    83683 
    83684 > color #7.5 #ff0002ff models
    83685 
    83686 > color #7.3 #ff0002ff models
    83687 
    83688 > color #7.4 magenta models
    83689 
    83690 > select add #7.1
    83691 
    83692 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    83693 
    83694 > select subtract #7.1
    83695 
    83696 Nothing selected 
    83697 
    83698 > select add #7.2
    83699 
    83700 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    83701 
    83702 > select subtract #7.2
    83703 
    83704 Nothing selected 
    83705 
    83706 > color #7.2 snow models
    83707 
    83708 > color #7.1 #dbb3e2ff models
    83709 
    83710 > select clear
    83711 
    83712 > hide #!5 models
    83713 
    83714 > color #2.9 #7b80ffff
    83715 
    83716 > color #2.7 #adffc1ff models
    83717 
    83718 > color #2.8 #adffc1ff models
    83719 
    83720 > color #2.2 #0b6dffff models
    83721 
    83722 > color #2.5 #0b6dffff models
    83723 
    83724 > color #2.2 #0b6dffff models
    83725 
    83726 [Repeated 1 time(s)]
    83727 
    83728 > hide #2.2 models
    83729 
    83730 > show #2.2 models
    83731 
    83732 > hide #2.3 models
    83733 
    83734 > show #2.3 models
    83735 
    83736 > hide #2.6 models
    83737 
    83738 > show #2.6 models
    83739 
    83740 > color #2.3 #20e0ffff models
    83741 
    83742 > color #2.6 #20e0ffff models
    83743 
    83744 > color #2.9 #a7c5d2ff models
    83745 
    83746 > select add #2.4
    83747 
    83748 2637 atoms, 319 residues, 1 model selected 
    83749 
    83750 > select add #2.1
    83751 
    83752 5274 atoms, 638 residues, 2 models selected 
    83753 
    83754 > color #2.4 #a7c5d2ff models
    83755 
    83756 > color #2.1 #a7c5d2ff models
    83757 
    83758 > color #2.9 #7b80ffff
    83759 
    83760 > select add #2
    83761 
    83762 16838 atoms, 17164 bonds, 2046 residues, 3 models selected 
    83763 
    83764 > hide sel surfaces
    83765 
    83766 [Repeated 2 time(s)]
    83767 
    83768 > show sel surfaces
    83769 
    83770 > hide sel surfaces
    83771 
    83772 > show sel surfaces
    83773 
    83774 > hide sel surfaces
    83775 
    83776 > select clear
    83777 
    83778 > color #2.9 #7b80ffff models
     1913[deleted to fit within ticket limits]
     1914
    837791915
    837801916> select add #2.9