| 1109 | | File |
| 1110 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1111 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 1112 | | models, status = collated_open(session, None, [data], data_format, |
| 1113 | | _add_models, |
| 1114 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1115 | | File |
| 1116 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1117 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 1118 | | return remember_data_format() |
| 1119 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 1120 | | File |
| 1121 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1122 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 1123 | | models, status = func(*func_args, **func_kw) |
| 1124 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1125 | | File |
| 1126 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1127 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 1128 | | return open_command_script(session, data, file_name, **kw) |
| 1129 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1130 | | File |
| 1131 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1132 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 1133 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 1134 | | File |
| 1135 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1136 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 1137 | | run(session, cmd, log=log) |
| 1138 | | File |
| 1139 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1140 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 1141 | | results = command.run(text, log=log, return_json=return_json) |
| 1142 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1143 | | File |
| 1144 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1145 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1146 | | result = ci.function(session, **kw_args) |
| 1147 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1148 | | File |
| 1149 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1150 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 1151 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 1152 | | log=log)[0] |
| 1153 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1154 | | File |
| 1155 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1156 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1157 | | result = ci.function(session, **kw_args) |
| 1158 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1159 | | File |
| 1160 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1161 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 1162 | | models, status = collated_open(session, None, [data], data_format, |
| 1163 | | _add_models, |
| 1164 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1165 | | File |
| 1166 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1167 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 1168 | | return remember_data_format() |
| 1169 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 1170 | | File |
| 1171 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1172 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 1173 | | models, status = func(*func_args, **func_kw) |
| 1174 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1175 | | File |
| 1176 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1177 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 1178 | | return open_command_script(session, data, file_name, **kw) |
| 1179 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1180 | | File |
| 1181 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1182 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 1183 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 1184 | | File |
| 1185 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1186 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 1187 | | run(session, cmd, log=log) |
| 1188 | | File |
| 1189 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1190 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 1191 | | results = command.run(text, log=log, return_json=return_json) |
| 1192 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1193 | | File |
| 1194 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1195 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1196 | | result = ci.function(session, **kw_args) |
| 1197 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1198 | | File |
| 1199 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1200 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 1201 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 1202 | | log=log)[0] |
| 1203 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1204 | | File |
| 1205 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1206 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1207 | | result = ci.function(session, **kw_args) |
| 1208 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1209 | | File |
| 1210 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1211 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 1212 | | models, status = collated_open(session, None, [data], data_format, |
| 1213 | | _add_models, |
| 1214 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1215 | | File |
| 1216 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1217 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 1218 | | return remember_data_format() |
| 1219 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 1220 | | File |
| 1221 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1222 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 1223 | | models, status = func(*func_args, **func_kw) |
| 1224 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1225 | | File |
| 1226 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1227 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 1228 | | return open_command_script(session, data, file_name, **kw) |
| 1229 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1230 | | File |
| 1231 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1232 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 1233 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 1234 | | File |
| 1235 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1236 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 1237 | | run(session, cmd, log=log) |
| 1238 | | File |
| 1239 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1240 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 1241 | | results = command.run(text, log=log, return_json=return_json) |
| 1242 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1243 | | File |
| 1244 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1245 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1246 | | result = ci.function(session, **kw_args) |
| 1247 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1248 | | File |
| 1249 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1250 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 1251 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 1252 | | log=log)[0] |
| 1253 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1254 | | File |
| 1255 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1256 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1257 | | result = ci.function(session, **kw_args) |
| 1258 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1259 | | File |
| 1260 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1261 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 1262 | | models, status = collated_open(session, None, [data], data_format, |
| 1263 | | _add_models, |
| 1264 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1265 | | File |
| 1266 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1267 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 1268 | | return remember_data_format() |
| 1269 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 1270 | | File |
| 1271 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1272 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 1273 | | models, status = func(*func_args, **func_kw) |
| 1274 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1275 | | File |
| 1276 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1277 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 1278 | | return open_command_script(session, data, file_name, **kw) |
| 1279 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1280 | | File |
| 1281 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1282 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 1283 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 1284 | | File |
| 1285 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1286 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 1287 | | run(session, cmd, log=log) |
| 1288 | | File |
| 1289 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1290 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 1291 | | results = command.run(text, log=log, return_json=return_json) |
| 1292 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1293 | | File |
| 1294 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1295 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1296 | | result = ci.function(session, **kw_args) |
| 1297 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1298 | | File |
| 1299 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1300 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 1301 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 1302 | | log=log)[0] |
| 1303 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1304 | | File |
| 1305 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1306 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1307 | | result = ci.function(session, **kw_args) |
| 1308 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1309 | | File |
| 1310 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1311 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 1312 | | models, status = collated_open(session, None, [data], data_format, |
| 1313 | | _add_models, |
| 1314 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1315 | | File |
| 1316 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1317 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 1318 | | return remember_data_format() |
| 1319 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 1320 | | File |
| 1321 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1322 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 1323 | | models, status = func(*func_args, **func_kw) |
| 1324 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1325 | | File |
| 1326 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1327 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 1328 | | return open_command_script(session, data, file_name, **kw) |
| 1329 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1330 | | File |
| 1331 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1332 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 1333 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 1334 | | File |
| 1335 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1336 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 1337 | | run(session, cmd, log=log) |
| 1338 | | File |
| 1339 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1340 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 1341 | | results = command.run(text, log=log, return_json=return_json) |
| 1342 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1343 | | File |
| 1344 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1345 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1346 | | result = ci.function(session, **kw_args) |
| 1347 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1348 | | File |
| 1349 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1350 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 1351 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 1352 | | log=log)[0] |
| 1353 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1354 | | File |
| 1355 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1356 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1357 | | result = ci.function(session, **kw_args) |
| 1358 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1359 | | File |
| 1360 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1361 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 1362 | | models, status = collated_open(session, None, [data], data_format, |
| 1363 | | _add_models, |
| 1364 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1365 | | File |
| 1366 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1367 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 1368 | | return remember_data_format() |
| 1369 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 1370 | | File |
| 1371 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1372 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 1373 | | models, status = func(*func_args, **func_kw) |
| 1374 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1375 | | File |
| 1376 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1377 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 1378 | | return open_command_script(session, data, file_name, **kw) |
| 1379 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1380 | | File |
| 1381 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1382 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 1383 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 1384 | | File |
| 1385 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1386 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 1387 | | run(session, cmd, log=log) |
| 1388 | | File |
| 1389 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1390 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 1391 | | results = command.run(text, log=log, return_json=return_json) |
| 1392 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1393 | | File |
| 1394 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1395 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1396 | | result = ci.function(session, **kw_args) |
| 1397 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1398 | | File |
| 1399 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1400 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 1401 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 1402 | | log=log)[0] |
| 1403 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1404 | | File |
| 1405 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1406 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1407 | | result = ci.function(session, **kw_args) |
| 1408 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1409 | | File |
| 1410 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1411 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 1412 | | models, status = collated_open(session, None, [data], data_format, |
| 1413 | | _add_models, |
| 1414 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1415 | | File |
| 1416 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1417 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 1418 | | return remember_data_format() |
| 1419 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 1420 | | File |
| 1421 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1422 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 1423 | | models, status = func(*func_args, **func_kw) |
| 1424 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1425 | | File |
| 1426 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1427 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 1428 | | return open_command_script(session, data, file_name, **kw) |
| 1429 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1430 | | File |
| 1431 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1432 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 1433 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 1434 | | File |
| 1435 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1436 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 1437 | | run(session, cmd, log=log) |
| 1438 | | File |
| 1439 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1440 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 1441 | | results = command.run(text, log=log, return_json=return_json) |
| 1442 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1443 | | File |
| 1444 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1445 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1446 | | result = ci.function(session, **kw_args) |
| 1447 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1448 | | File |
| 1449 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1450 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 1451 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 1452 | | log=log)[0] |
| 1453 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1454 | | File |
| 1455 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1456 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1457 | | result = ci.function(session, **kw_args) |
| 1458 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1459 | | File |
| 1460 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1461 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 1462 | | models, status = collated_open(session, None, [data], data_format, |
| 1463 | | _add_models, |
| 1464 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1465 | | File |
| 1466 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1467 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 1468 | | return remember_data_format() |
| 1469 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 1470 | | File |
| 1471 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1472 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 1473 | | models, status = func(*func_args, **func_kw) |
| 1474 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1475 | | File |
| 1476 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1477 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 1478 | | return open_command_script(session, data, file_name, **kw) |
| 1479 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1480 | | File |
| 1481 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1482 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 1483 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 1484 | | File |
| 1485 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1486 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 1487 | | run(session, cmd, log=log) |
| 1488 | | File |
| 1489 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1490 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 1491 | | results = command.run(text, log=log, return_json=return_json) |
| 1492 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1493 | | File |
| 1494 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1495 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1496 | | result = ci.function(session, **kw_args) |
| 1497 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1498 | | File |
| 1499 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1500 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 1501 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 1502 | | log=log)[0] |
| 1503 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1504 | | File |
| 1505 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1506 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1507 | | result = ci.function(session, **kw_args) |
| 1508 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1509 | | File |
| 1510 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1511 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 1512 | | models, status = collated_open(session, None, [data], data_format, |
| 1513 | | _add_models, |
| 1514 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1515 | | File |
| 1516 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1517 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 1518 | | return remember_data_format() |
| 1519 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 1520 | | File |
| 1521 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1522 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 1523 | | models, status = func(*func_args, **func_kw) |
| 1524 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1525 | | File |
| 1526 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1527 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 1528 | | return open_command_script(session, data, file_name, **kw) |
| 1529 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1530 | | File |
| 1531 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1532 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 1533 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 1534 | | File |
| 1535 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1536 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 1537 | | run(session, cmd, log=log) |
| 1538 | | File |
| 1539 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1540 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 1541 | | results = command.run(text, log=log, return_json=return_json) |
| 1542 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1543 | | File |
| 1544 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1545 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1546 | | result = ci.function(session, **kw_args) |
| 1547 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1548 | | File |
| 1549 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1550 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 1551 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 1552 | | log=log)[0] |
| 1553 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1554 | | File |
| 1555 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1556 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1557 | | result = ci.function(session, **kw_args) |
| 1558 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1559 | | File |
| 1560 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1561 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 1562 | | models, status = collated_open(session, None, [data], data_format, |
| 1563 | | _add_models, |
| 1564 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1565 | | File |
| 1566 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1567 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 1568 | | return remember_data_format() |
| 1569 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 1570 | | File |
| 1571 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1572 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 1573 | | models, status = func(*func_args, **func_kw) |
| 1574 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1575 | | File |
| 1576 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1577 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 1578 | | return open_command_script(session, data, file_name, **kw) |
| 1579 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1580 | | File |
| 1581 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1582 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 1583 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 1584 | | File |
| 1585 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1586 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 1587 | | run(session, cmd, log=log) |
| 1588 | | File |
| 1589 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1590 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 1591 | | results = command.run(text, log=log, return_json=return_json) |
| 1592 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1593 | | File |
| 1594 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1595 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1596 | | result = ci.function(session, **kw_args) |
| 1597 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1598 | | File |
| 1599 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1600 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 1601 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 1602 | | log=log)[0] |
| 1603 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1604 | | File |
| 1605 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1606 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1607 | | result = ci.function(session, **kw_args) |
| 1608 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1609 | | File |
| 1610 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1611 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 1612 | | models, status = collated_open(session, None, [data], data_format, |
| 1613 | | _add_models, |
| 1614 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1615 | | File |
| 1616 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1617 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 1618 | | return remember_data_format() |
| 1619 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 1620 | | File |
| 1621 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1622 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 1623 | | models, status = func(*func_args, **func_kw) |
| 1624 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1625 | | File |
| 1626 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1627 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 1628 | | return open_command_script(session, data, file_name, **kw) |
| 1629 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1630 | | File |
| 1631 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1632 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 1633 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 1634 | | File |
| 1635 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1636 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 1637 | | run(session, cmd, log=log) |
| 1638 | | File |
| 1639 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1640 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 1641 | | results = command.run(text, log=log, return_json=return_json) |
| 1642 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1643 | | File |
| 1644 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1645 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1646 | | result = ci.function(session, **kw_args) |
| 1647 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1648 | | File |
| 1649 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1650 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 1651 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 1652 | | log=log)[0] |
| 1653 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1654 | | File |
| 1655 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1656 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1657 | | result = ci.function(session, **kw_args) |
| 1658 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1659 | | File |
| 1660 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1661 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 1662 | | models, status = collated_open(session, None, [data], data_format, |
| 1663 | | _add_models, |
| 1664 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1665 | | File |
| 1666 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1667 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 1668 | | return remember_data_format() |
| 1669 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 1670 | | File |
| 1671 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1672 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 1673 | | models, status = func(*func_args, **func_kw) |
| 1674 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1675 | | File |
| 1676 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1677 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 1678 | | return open_command_script(session, data, file_name, **kw) |
| 1679 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1680 | | File |
| 1681 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1682 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 1683 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 1684 | | File |
| 1685 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1686 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 1687 | | run(session, cmd, log=log) |
| 1688 | | File |
| 1689 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1690 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 1691 | | results = command.run(text, log=log, return_json=return_json) |
| 1692 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1693 | | File |
| 1694 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1695 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1696 | | result = ci.function(session, **kw_args) |
| 1697 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1698 | | File |
| 1699 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1700 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 1701 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 1702 | | log=log)[0] |
| 1703 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1704 | | File |
| 1705 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1706 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1707 | | result = ci.function(session, **kw_args) |
| 1708 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1709 | | File |
| 1710 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1711 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 1712 | | models, status = collated_open(session, None, [data], data_format, |
| 1713 | | _add_models, |
| 1714 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1715 | | File |
| 1716 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1717 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 1718 | | return remember_data_format() |
| 1719 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 1720 | | File |
| 1721 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1722 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 1723 | | models, status = func(*func_args, **func_kw) |
| 1724 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1725 | | File |
| 1726 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1727 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 1728 | | return open_command_script(session, data, file_name, **kw) |
| 1729 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1730 | | File |
| 1731 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1732 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 1733 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 1734 | | File |
| 1735 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1736 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 1737 | | run(session, cmd, log=log) |
| 1738 | | File |
| 1739 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1740 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 1741 | | results = command.run(text, log=log, return_json=return_json) |
| 1742 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1743 | | File |
| 1744 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1745 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1746 | | result = ci.function(session, **kw_args) |
| 1747 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1748 | | File |
| 1749 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1750 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 1751 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 1752 | | log=log)[0] |
| 1753 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1754 | | File |
| 1755 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1756 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1757 | | result = ci.function(session, **kw_args) |
| 1758 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1759 | | File |
| 1760 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1761 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 1762 | | models, status = collated_open(session, None, [data], data_format, |
| 1763 | | _add_models, |
| 1764 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1765 | | File |
| 1766 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1767 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 1768 | | return remember_data_format() |
| 1769 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 1770 | | File |
| 1771 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1772 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 1773 | | models, status = func(*func_args, **func_kw) |
| 1774 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1775 | | File |
| 1776 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1777 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 1778 | | return open_command_script(session, data, file_name, **kw) |
| 1779 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1780 | | File |
| 1781 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1782 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 1783 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 1784 | | File |
| 1785 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1786 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 1787 | | run(session, cmd, log=log) |
| 1788 | | File |
| 1789 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1790 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 1791 | | results = command.run(text, log=log, return_json=return_json) |
| 1792 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1793 | | File |
| 1794 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1795 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1796 | | result = ci.function(session, **kw_args) |
| 1797 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1798 | | File |
| 1799 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1800 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 1801 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 1802 | | log=log)[0] |
| 1803 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1804 | | File |
| 1805 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1806 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1807 | | result = ci.function(session, **kw_args) |
| 1808 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1809 | | File |
| 1810 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1811 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 1812 | | models, status = collated_open(session, None, [data], data_format, |
| 1813 | | _add_models, |
| 1814 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1815 | | File |
| 1816 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1817 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 1818 | | return remember_data_format() |
| 1819 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 1820 | | File |
| 1821 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1822 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 1823 | | models, status = func(*func_args, **func_kw) |
| 1824 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1825 | | File |
| 1826 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1827 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 1828 | | return open_command_script(session, data, file_name, **kw) |
| 1829 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1830 | | File |
| 1831 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1832 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 1833 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 1834 | | File |
| 1835 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1836 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 1837 | | run(session, cmd, log=log) |
| 1838 | | File |
| 1839 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1840 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 1841 | | results = command.run(text, log=log, return_json=return_json) |
| 1842 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1843 | | File |
| 1844 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1845 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1846 | | result = ci.function(session, **kw_args) |
| 1847 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1848 | | File |
| 1849 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1850 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 1851 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 1852 | | log=log)[0] |
| 1853 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1854 | | File |
| 1855 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1856 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1857 | | result = ci.function(session, **kw_args) |
| 1858 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1859 | | File |
| 1860 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1861 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 1862 | | models, status = collated_open(session, None, [data], data_format, |
| 1863 | | _add_models, |
| 1864 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1865 | | File |
| 1866 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1867 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 1868 | | return remember_data_format() |
| 1869 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 1870 | | File |
| 1871 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1872 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 1873 | | models, status = func(*func_args, **func_kw) |
| 1874 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1875 | | File |
| 1876 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1877 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 1878 | | return open_command_script(session, data, file_name, **kw) |
| 1879 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1880 | | File |
| 1881 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1882 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 1883 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 1884 | | File |
| 1885 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1886 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 1887 | | run(session, cmd, log=log) |
| 1888 | | File |
| 1889 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1890 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 1891 | | results = command.run(text, log=log, return_json=return_json) |
| 1892 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1893 | | File |
| 1894 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1895 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1896 | | result = ci.function(session, **kw_args) |
| 1897 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1898 | | File |
| 1899 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1900 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 1901 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 1902 | | log=log)[0] |
| 1903 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1904 | | File |
| 1905 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1906 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1907 | | result = ci.function(session, **kw_args) |
| 1908 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1909 | | File |
| 1910 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1911 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 1912 | | models, status = collated_open(session, None, [data], data_format, |
| 1913 | | _add_models, |
| 1914 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1915 | | File |
| 1916 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1917 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 1918 | | return remember_data_format() |
| 1919 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 1920 | | File |
| 1921 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1922 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 1923 | | models, status = func(*func_args, **func_kw) |
| 1924 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1925 | | File |
| 1926 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1927 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 1928 | | return open_command_script(session, data, file_name, **kw) |
| 1929 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1930 | | File |
| 1931 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1932 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 1933 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 1934 | | File |
| 1935 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1936 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 1937 | | run(session, cmd, log=log) |
| 1938 | | File |
| 1939 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1940 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 1941 | | results = command.run(text, log=log, return_json=return_json) |
| 1942 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1943 | | File |
| 1944 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1945 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1946 | | result = ci.function(session, **kw_args) |
| 1947 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1948 | | File |
| 1949 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1950 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 1951 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 1952 | | log=log)[0] |
| 1953 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1954 | | File |
| 1955 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1956 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1957 | | result = ci.function(session, **kw_args) |
| 1958 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1959 | | File |
| 1960 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1961 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 1962 | | models, status = collated_open(session, None, [data], data_format, |
| 1963 | | _add_models, |
| 1964 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1965 | | File |
| 1966 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1967 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 1968 | | return remember_data_format() |
| 1969 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 1970 | | File |
| 1971 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1972 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 1973 | | models, status = func(*func_args, **func_kw) |
| 1974 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1975 | | File |
| 1976 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1977 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 1978 | | return open_command_script(session, data, file_name, **kw) |
| 1979 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1980 | | File |
| 1981 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1982 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 1983 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 1984 | | File |
| 1985 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1986 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 1987 | | run(session, cmd, log=log) |
| 1988 | | File |
| 1989 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1990 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 1991 | | results = command.run(text, log=log, return_json=return_json) |
| 1992 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1993 | | File |
| 1994 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 1995 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 1996 | | result = ci.function(session, **kw_args) |
| 1997 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 1998 | | File |
| 1999 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2000 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 2001 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 2002 | | log=log)[0] |
| 2003 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2004 | | File |
| 2005 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2006 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2007 | | result = ci.function(session, **kw_args) |
| 2008 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2009 | | File |
| 2010 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2011 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 2012 | | models, status = collated_open(session, None, [data], data_format, |
| 2013 | | _add_models, |
| 2014 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2015 | | File |
| 2016 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2017 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 2018 | | return remember_data_format() |
| 2019 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 2020 | | File |
| 2021 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2022 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 2023 | | models, status = func(*func_args, **func_kw) |
| 2024 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2025 | | File |
| 2026 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2027 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 2028 | | return open_command_script(session, data, file_name, **kw) |
| 2029 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2030 | | File |
| 2031 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2032 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 2033 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 2034 | | File |
| 2035 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2036 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 2037 | | run(session, cmd, log=log) |
| 2038 | | File |
| 2039 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2040 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 2041 | | results = command.run(text, log=log, return_json=return_json) |
| 2042 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2043 | | File |
| 2044 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2045 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2046 | | result = ci.function(session, **kw_args) |
| 2047 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2048 | | File |
| 2049 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2050 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 2051 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 2052 | | log=log)[0] |
| 2053 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2054 | | File |
| 2055 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2056 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2057 | | result = ci.function(session, **kw_args) |
| 2058 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2059 | | File |
| 2060 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2061 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 2062 | | models, status = collated_open(session, None, [data], data_format, |
| 2063 | | _add_models, |
| 2064 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2065 | | File |
| 2066 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2067 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 2068 | | return remember_data_format() |
| 2069 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 2070 | | File |
| 2071 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2072 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 2073 | | models, status = func(*func_args, **func_kw) |
| 2074 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2075 | | File |
| 2076 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2077 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 2078 | | return open_command_script(session, data, file_name, **kw) |
| 2079 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2080 | | File |
| 2081 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2082 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 2083 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 2084 | | File |
| 2085 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2086 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 2087 | | run(session, cmd, log=log) |
| 2088 | | File |
| 2089 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2090 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 2091 | | results = command.run(text, log=log, return_json=return_json) |
| 2092 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2093 | | File |
| 2094 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2095 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2096 | | result = ci.function(session, **kw_args) |
| 2097 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2098 | | File |
| 2099 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2100 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 2101 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 2102 | | log=log)[0] |
| 2103 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2104 | | File |
| 2105 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2106 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2107 | | result = ci.function(session, **kw_args) |
| 2108 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2109 | | File |
| 2110 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2111 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 2112 | | models, status = collated_open(session, None, [data], data_format, |
| 2113 | | _add_models, |
| 2114 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2115 | | File |
| 2116 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2117 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 2118 | | return remember_data_format() |
| 2119 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 2120 | | File |
| 2121 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2122 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 2123 | | models, status = func(*func_args, **func_kw) |
| 2124 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2125 | | File |
| 2126 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2127 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 2128 | | return open_command_script(session, data, file_name, **kw) |
| 2129 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2130 | | File |
| 2131 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2132 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 2133 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 2134 | | File |
| 2135 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2136 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 2137 | | run(session, cmd, log=log) |
| 2138 | | File |
| 2139 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2140 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 2141 | | results = command.run(text, log=log, return_json=return_json) |
| 2142 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2143 | | File |
| 2144 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2145 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2146 | | result = ci.function(session, **kw_args) |
| 2147 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2148 | | File |
| 2149 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2150 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 2151 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 2152 | | log=log)[0] |
| 2153 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2154 | | File |
| 2155 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2156 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2157 | | result = ci.function(session, **kw_args) |
| 2158 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2159 | | File |
| 2160 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2161 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 2162 | | models, status = collated_open(session, None, [data], data_format, |
| 2163 | | _add_models, |
| 2164 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2165 | | File |
| 2166 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2167 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 2168 | | return remember_data_format() |
| 2169 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 2170 | | File |
| 2171 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2172 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 2173 | | models, status = func(*func_args, **func_kw) |
| 2174 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2175 | | File |
| 2176 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2177 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 2178 | | return open_command_script(session, data, file_name, **kw) |
| 2179 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2180 | | File |
| 2181 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2182 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 2183 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 2184 | | File |
| 2185 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2186 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 2187 | | run(session, cmd, log=log) |
| 2188 | | File |
| 2189 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2190 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 2191 | | results = command.run(text, log=log, return_json=return_json) |
| 2192 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2193 | | File |
| 2194 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2195 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2196 | | result = ci.function(session, **kw_args) |
| 2197 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2198 | | File |
| 2199 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2200 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 2201 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 2202 | | log=log)[0] |
| 2203 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2204 | | File |
| 2205 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2206 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2207 | | result = ci.function(session, **kw_args) |
| 2208 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2209 | | File |
| 2210 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2211 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 2212 | | models, status = collated_open(session, None, [data], data_format, |
| 2213 | | _add_models, |
| 2214 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2215 | | File |
| 2216 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2217 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 2218 | | return remember_data_format() |
| 2219 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 2220 | | File |
| 2221 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2222 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 2223 | | models, status = func(*func_args, **func_kw) |
| 2224 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2225 | | File |
| 2226 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2227 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 2228 | | return open_command_script(session, data, file_name, **kw) |
| 2229 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2230 | | File |
| 2231 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2232 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 2233 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 2234 | | File |
| 2235 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2236 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 2237 | | run(session, cmd, log=log) |
| 2238 | | File |
| 2239 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2240 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 2241 | | results = command.run(text, log=log, return_json=return_json) |
| 2242 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2243 | | File |
| 2244 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2245 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2246 | | result = ci.function(session, **kw_args) |
| 2247 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2248 | | File |
| 2249 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2250 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 2251 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 2252 | | log=log)[0] |
| 2253 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2254 | | File |
| 2255 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2256 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2257 | | result = ci.function(session, **kw_args) |
| 2258 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2259 | | File |
| 2260 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2261 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 2262 | | models, status = collated_open(session, None, [data], data_format, |
| 2263 | | _add_models, |
| 2264 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2265 | | File |
| 2266 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2267 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 2268 | | return remember_data_format() |
| 2269 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 2270 | | File |
| 2271 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2272 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 2273 | | models, status = func(*func_args, **func_kw) |
| 2274 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2275 | | File |
| 2276 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2277 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 2278 | | return open_command_script(session, data, file_name, **kw) |
| 2279 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2280 | | File |
| 2281 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2282 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 2283 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 2284 | | File |
| 2285 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2286 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 2287 | | run(session, cmd, log=log) |
| 2288 | | File |
| 2289 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2290 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 2291 | | results = command.run(text, log=log, return_json=return_json) |
| 2292 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2293 | | File |
| 2294 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2295 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2296 | | result = ci.function(session, **kw_args) |
| 2297 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2298 | | File |
| 2299 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2300 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 2301 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 2302 | | log=log)[0] |
| 2303 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2304 | | File |
| 2305 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2306 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2307 | | result = ci.function(session, **kw_args) |
| 2308 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2309 | | File |
| 2310 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2311 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 2312 | | models, status = collated_open(session, None, [data], data_format, |
| 2313 | | _add_models, |
| 2314 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2315 | | File |
| 2316 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2317 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 2318 | | return remember_data_format() |
| 2319 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 2320 | | File |
| 2321 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2322 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 2323 | | models, status = func(*func_args, **func_kw) |
| 2324 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2325 | | File |
| 2326 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2327 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 2328 | | return open_command_script(session, data, file_name, **kw) |
| 2329 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2330 | | File |
| 2331 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2332 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 2333 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 2334 | | File |
| 2335 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2336 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 2337 | | run(session, cmd, log=log) |
| 2338 | | File |
| 2339 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2340 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 2341 | | results = command.run(text, log=log, return_json=return_json) |
| 2342 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2343 | | File |
| 2344 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2345 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2346 | | result = ci.function(session, **kw_args) |
| 2347 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2348 | | File |
| 2349 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2350 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 2351 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 2352 | | log=log)[0] |
| 2353 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2354 | | File |
| 2355 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2356 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2357 | | result = ci.function(session, **kw_args) |
| 2358 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2359 | | File |
| 2360 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2361 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 2362 | | models, status = collated_open(session, None, [data], data_format, |
| 2363 | | _add_models, |
| 2364 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2365 | | File |
| 2366 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2367 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 2368 | | return remember_data_format() |
| 2369 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 2370 | | File |
| 2371 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2372 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 2373 | | models, status = func(*func_args, **func_kw) |
| 2374 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2375 | | File |
| 2376 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2377 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 2378 | | return open_command_script(session, data, file_name, **kw) |
| 2379 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2380 | | File |
| 2381 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2382 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 2383 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 2384 | | File |
| 2385 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2386 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 2387 | | run(session, cmd, log=log) |
| 2388 | | File |
| 2389 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2390 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 2391 | | results = command.run(text, log=log, return_json=return_json) |
| 2392 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2393 | | File |
| 2394 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2395 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2396 | | result = ci.function(session, **kw_args) |
| 2397 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2398 | | File |
| 2399 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2400 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 2401 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 2402 | | log=log)[0] |
| 2403 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2404 | | File |
| 2405 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2406 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2407 | | result = ci.function(session, **kw_args) |
| 2408 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2409 | | File |
| 2410 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2411 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 2412 | | models, status = collated_open(session, None, [data], data_format, |
| 2413 | | _add_models, |
| 2414 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2415 | | File |
| 2416 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2417 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 2418 | | return remember_data_format() |
| 2419 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 2420 | | File |
| 2421 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2422 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 2423 | | models, status = func(*func_args, **func_kw) |
| 2424 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2425 | | File |
| 2426 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2427 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 2428 | | return open_command_script(session, data, file_name, **kw) |
| 2429 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2430 | | File |
| 2431 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2432 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 2433 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 2434 | | File |
| 2435 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2436 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 2437 | | run(session, cmd, log=log) |
| 2438 | | File |
| 2439 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2440 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 2441 | | results = command.run(text, log=log, return_json=return_json) |
| 2442 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2443 | | File |
| 2444 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2445 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2446 | | result = ci.function(session, **kw_args) |
| 2447 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2448 | | File |
| 2449 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2450 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 2451 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 2452 | | log=log)[0] |
| 2453 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2454 | | File |
| 2455 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2456 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2457 | | result = ci.function(session, **kw_args) |
| 2458 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2459 | | File |
| 2460 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2461 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 2462 | | models, status = collated_open(session, None, [data], data_format, |
| 2463 | | _add_models, |
| 2464 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2465 | | File |
| 2466 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2467 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 2468 | | return remember_data_format() |
| 2469 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 2470 | | File |
| 2471 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2472 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 2473 | | models, status = func(*func_args, **func_kw) |
| 2474 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2475 | | File |
| 2476 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2477 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 2478 | | return open_command_script(session, data, file_name, **kw) |
| 2479 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2480 | | File |
| 2481 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2482 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 2483 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 2484 | | File |
| 2485 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2486 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 2487 | | run(session, cmd, log=log) |
| 2488 | | File |
| 2489 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2490 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 2491 | | results = command.run(text, log=log, return_json=return_json) |
| 2492 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2493 | | File |
| 2494 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2495 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2496 | | result = ci.function(session, **kw_args) |
| 2497 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2498 | | File |
| 2499 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2500 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 2501 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 2502 | | log=log)[0] |
| 2503 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2504 | | File |
| 2505 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2506 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2507 | | result = ci.function(session, **kw_args) |
| 2508 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2509 | | File |
| 2510 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2511 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 2512 | | models, status = collated_open(session, None, [data], data_format, |
| 2513 | | _add_models, |
| 2514 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2515 | | File |
| 2516 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2517 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 2518 | | return remember_data_format() |
| 2519 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 2520 | | File |
| 2521 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2522 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 2523 | | models, status = func(*func_args, **func_kw) |
| 2524 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2525 | | File |
| 2526 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2527 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 2528 | | return open_command_script(session, data, file_name, **kw) |
| 2529 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2530 | | File |
| 2531 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2532 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 2533 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 2534 | | File |
| 2535 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2536 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 2537 | | run(session, cmd, log=log) |
| 2538 | | File |
| 2539 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2540 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 2541 | | results = command.run(text, log=log, return_json=return_json) |
| 2542 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2543 | | File |
| 2544 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2545 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2546 | | result = ci.function(session, **kw_args) |
| 2547 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2548 | | File |
| 2549 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2550 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 2551 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 2552 | | log=log)[0] |
| 2553 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2554 | | File |
| 2555 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2556 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2557 | | result = ci.function(session, **kw_args) |
| 2558 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2559 | | File |
| 2560 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2561 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 2562 | | models, status = collated_open(session, None, [data], data_format, |
| 2563 | | _add_models, |
| 2564 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2565 | | File |
| 2566 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2567 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 2568 | | return remember_data_format() |
| 2569 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 2570 | | File |
| 2571 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2572 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 2573 | | models, status = func(*func_args, **func_kw) |
| 2574 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2575 | | File |
| 2576 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2577 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 2578 | | return open_command_script(session, data, file_name, **kw) |
| 2579 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2580 | | File |
| 2581 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2582 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 2583 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 2584 | | File |
| 2585 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2586 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 2587 | | run(session, cmd, log=log) |
| 2588 | | File |
| 2589 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2590 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 2591 | | results = command.run(text, log=log, return_json=return_json) |
| 2592 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2593 | | File |
| 2594 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2595 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2596 | | result = ci.function(session, **kw_args) |
| 2597 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2598 | | File |
| 2599 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2600 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 2601 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 2602 | | log=log)[0] |
| 2603 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2604 | | File |
| 2605 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2606 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2607 | | result = ci.function(session, **kw_args) |
| 2608 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2609 | | File |
| 2610 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2611 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 2612 | | models, status = collated_open(session, None, [data], data_format, |
| 2613 | | _add_models, |
| 2614 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2615 | | File |
| 2616 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2617 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 2618 | | return remember_data_format() |
| 2619 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 2620 | | File |
| 2621 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2622 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 2623 | | models, status = func(*func_args, **func_kw) |
| 2624 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2625 | | File |
| 2626 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2627 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 2628 | | return open_command_script(session, data, file_name, **kw) |
| 2629 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2630 | | File |
| 2631 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2632 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 2633 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 2634 | | File |
| 2635 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2636 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 2637 | | run(session, cmd, log=log) |
| 2638 | | File |
| 2639 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2640 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 2641 | | results = command.run(text, log=log, return_json=return_json) |
| 2642 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2643 | | File |
| 2644 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2645 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2646 | | result = ci.function(session, **kw_args) |
| 2647 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2648 | | File |
| 2649 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2650 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 2651 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 2652 | | log=log)[0] |
| 2653 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2654 | | File |
| 2655 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2656 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2657 | | result = ci.function(session, **kw_args) |
| 2658 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2659 | | File |
| 2660 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2661 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 2662 | | models, status = collated_open(session, None, [data], data_format, |
| 2663 | | _add_models, |
| 2664 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2665 | | File |
| 2666 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2667 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 2668 | | return remember_data_format() |
| 2669 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 2670 | | File |
| 2671 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2672 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 2673 | | models, status = func(*func_args, **func_kw) |
| 2674 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2675 | | File |
| 2676 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2677 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 2678 | | return open_command_script(session, data, file_name, **kw) |
| 2679 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2680 | | File |
| 2681 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2682 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 2683 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 2684 | | File |
| 2685 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2686 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 2687 | | run(session, cmd, log=log) |
| 2688 | | File |
| 2689 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2690 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 2691 | | results = command.run(text, log=log, return_json=return_json) |
| 2692 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2693 | | File |
| 2694 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2695 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2696 | | result = ci.function(session, **kw_args) |
| 2697 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2698 | | File |
| 2699 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2700 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 2701 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 2702 | | log=log)[0] |
| 2703 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2704 | | File |
| 2705 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2706 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2707 | | result = ci.function(session, **kw_args) |
| 2708 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2709 | | File |
| 2710 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2711 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 2712 | | models, status = collated_open(session, None, [data], data_format, |
| 2713 | | _add_models, |
| 2714 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2715 | | File |
| 2716 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2717 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 2718 | | return remember_data_format() |
| 2719 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 2720 | | File |
| 2721 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2722 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 2723 | | models, status = func(*func_args, **func_kw) |
| 2724 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2725 | | File |
| 2726 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2727 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 2728 | | return open_command_script(session, data, file_name, **kw) |
| 2729 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2730 | | File |
| 2731 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2732 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 2733 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 2734 | | File |
| 2735 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2736 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 2737 | | run(session, cmd, log=log) |
| 2738 | | File |
| 2739 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2740 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 2741 | | results = command.run(text, log=log, return_json=return_json) |
| 2742 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2743 | | File |
| 2744 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2745 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2746 | | result = ci.function(session, **kw_args) |
| 2747 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2748 | | File |
| 2749 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2750 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 2751 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 2752 | | log=log)[0] |
| 2753 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2754 | | File |
| 2755 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2756 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2757 | | result = ci.function(session, **kw_args) |
| 2758 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2759 | | File |
| 2760 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2761 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 2762 | | models, status = collated_open(session, None, [data], data_format, |
| 2763 | | _add_models, |
| 2764 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2765 | | File |
| 2766 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2767 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 2768 | | return remember_data_format() |
| 2769 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 2770 | | File |
| 2771 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2772 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 2773 | | models, status = func(*func_args, **func_kw) |
| 2774 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2775 | | File |
| 2776 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2777 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 2778 | | return open_command_script(session, data, file_name, **kw) |
| 2779 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2780 | | File |
| 2781 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2782 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 2783 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 2784 | | File |
| 2785 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2786 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 2787 | | run(session, cmd, log=log) |
| 2788 | | File |
| 2789 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2790 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 2791 | | results = command.run(text, log=log, return_json=return_json) |
| 2792 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2793 | | File |
| 2794 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2795 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2796 | | result = ci.function(session, **kw_args) |
| 2797 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2798 | | File |
| 2799 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2800 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 2801 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 2802 | | log=log)[0] |
| 2803 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2804 | | File |
| 2805 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2806 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2807 | | result = ci.function(session, **kw_args) |
| 2808 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2809 | | File |
| 2810 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2811 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 2812 | | models, status = collated_open(session, None, [data], data_format, |
| 2813 | | _add_models, |
| 2814 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2815 | | File |
| 2816 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2817 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 2818 | | return remember_data_format() |
| 2819 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 2820 | | File |
| 2821 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2822 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 2823 | | models, status = func(*func_args, **func_kw) |
| 2824 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2825 | | File |
| 2826 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2827 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 2828 | | return open_command_script(session, data, file_name, **kw) |
| 2829 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2830 | | File |
| 2831 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2832 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 2833 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 2834 | | File |
| 2835 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2836 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 2837 | | run(session, cmd, log=log) |
| 2838 | | File |
| 2839 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2840 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 2841 | | results = command.run(text, log=log, return_json=return_json) |
| 2842 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2843 | | File |
| 2844 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2845 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2846 | | result = ci.function(session, **kw_args) |
| 2847 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2848 | | File |
| 2849 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2850 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 2851 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 2852 | | log=log)[0] |
| 2853 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2854 | | File |
| 2855 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2856 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2857 | | result = ci.function(session, **kw_args) |
| 2858 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2859 | | File |
| 2860 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2861 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 2862 | | models, status = collated_open(session, None, [data], data_format, |
| 2863 | | _add_models, |
| 2864 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2865 | | File |
| 2866 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2867 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 2868 | | return remember_data_format() |
| 2869 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 2870 | | File |
| 2871 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2872 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 2873 | | models, status = func(*func_args, **func_kw) |
| 2874 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2875 | | File |
| 2876 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2877 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 2878 | | return open_command_script(session, data, file_name, **kw) |
| 2879 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2880 | | File |
| 2881 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2882 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 2883 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 2884 | | File |
| 2885 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2886 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 2887 | | run(session, cmd, log=log) |
| 2888 | | File |
| 2889 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2890 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 2891 | | results = command.run(text, log=log, return_json=return_json) |
| 2892 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2893 | | File |
| 2894 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2895 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2896 | | result = ci.function(session, **kw_args) |
| 2897 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2898 | | File |
| 2899 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2900 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 2901 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 2902 | | log=log)[0] |
| 2903 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2904 | | File |
| 2905 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2906 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2907 | | result = ci.function(session, **kw_args) |
| 2908 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2909 | | File |
| 2910 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2911 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 2912 | | models, status = collated_open(session, None, [data], data_format, |
| 2913 | | _add_models, |
| 2914 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2915 | | File |
| 2916 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2917 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 2918 | | return remember_data_format() |
| 2919 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 2920 | | File |
| 2921 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2922 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 2923 | | models, status = func(*func_args, **func_kw) |
| 2924 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2925 | | File |
| 2926 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2927 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 2928 | | return open_command_script(session, data, file_name, **kw) |
| 2929 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2930 | | File |
| 2931 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2932 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 2933 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 2934 | | File |
| 2935 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2936 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 2937 | | run(session, cmd, log=log) |
| 2938 | | File |
| 2939 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2940 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 2941 | | results = command.run(text, log=log, return_json=return_json) |
| 2942 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2943 | | File |
| 2944 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2945 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2946 | | result = ci.function(session, **kw_args) |
| 2947 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2948 | | File |
| 2949 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2950 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 2951 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 2952 | | log=log)[0] |
| 2953 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2954 | | File |
| 2955 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2956 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2957 | | result = ci.function(session, **kw_args) |
| 2958 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2959 | | File |
| 2960 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2961 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 2962 | | models, status = collated_open(session, None, [data], data_format, |
| 2963 | | _add_models, |
| 2964 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2965 | | File |
| 2966 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2967 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 2968 | | return remember_data_format() |
| 2969 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 2970 | | File |
| 2971 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2972 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 2973 | | models, status = func(*func_args, **func_kw) |
| 2974 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2975 | | File |
| 2976 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2977 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 2978 | | return open_command_script(session, data, file_name, **kw) |
| 2979 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2980 | | File |
| 2981 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2982 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 2983 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 2984 | | File |
| 2985 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2986 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 2987 | | run(session, cmd, log=log) |
| 2988 | | File |
| 2989 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2990 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 2991 | | results = command.run(text, log=log, return_json=return_json) |
| 2992 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2993 | | File |
| 2994 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 2995 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 2996 | | result = ci.function(session, **kw_args) |
| 2997 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 2998 | | File |
| 2999 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3000 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 3001 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 3002 | | log=log)[0] |
| 3003 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3004 | | File |
| 3005 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3006 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3007 | | result = ci.function(session, **kw_args) |
| 3008 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3009 | | File |
| 3010 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3011 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 3012 | | models, status = collated_open(session, None, [data], data_format, |
| 3013 | | _add_models, |
| 3014 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3015 | | File |
| 3016 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3017 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 3018 | | return remember_data_format() |
| 3019 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 3020 | | File |
| 3021 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3022 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 3023 | | models, status = func(*func_args, **func_kw) |
| 3024 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3025 | | File |
| 3026 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3027 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 3028 | | return open_command_script(session, data, file_name, **kw) |
| 3029 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3030 | | File |
| 3031 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3032 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 3033 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 3034 | | File |
| 3035 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3036 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 3037 | | run(session, cmd, log=log) |
| 3038 | | File |
| 3039 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3040 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 3041 | | results = command.run(text, log=log, return_json=return_json) |
| 3042 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3043 | | File |
| 3044 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3045 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3046 | | result = ci.function(session, **kw_args) |
| 3047 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3048 | | File |
| 3049 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3050 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 3051 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 3052 | | log=log)[0] |
| 3053 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3054 | | File |
| 3055 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3056 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3057 | | result = ci.function(session, **kw_args) |
| 3058 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3059 | | File |
| 3060 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3061 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 3062 | | models, status = collated_open(session, None, [data], data_format, |
| 3063 | | _add_models, |
| 3064 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3065 | | File |
| 3066 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3067 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 3068 | | return remember_data_format() |
| 3069 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 3070 | | File |
| 3071 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3072 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 3073 | | models, status = func(*func_args, **func_kw) |
| 3074 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3075 | | File |
| 3076 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3077 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 3078 | | return open_command_script(session, data, file_name, **kw) |
| 3079 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3080 | | File |
| 3081 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3082 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 3083 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 3084 | | File |
| 3085 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3086 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 3087 | | run(session, cmd, log=log) |
| 3088 | | File |
| 3089 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3090 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 3091 | | results = command.run(text, log=log, return_json=return_json) |
| 3092 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3093 | | File |
| 3094 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3095 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3096 | | result = ci.function(session, **kw_args) |
| 3097 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3098 | | File |
| 3099 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3100 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 3101 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 3102 | | log=log)[0] |
| 3103 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3104 | | File |
| 3105 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3106 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3107 | | result = ci.function(session, **kw_args) |
| 3108 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3109 | | File |
| 3110 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3111 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 3112 | | models, status = collated_open(session, None, [data], data_format, |
| 3113 | | _add_models, |
| 3114 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3115 | | File |
| 3116 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3117 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 3118 | | return remember_data_format() |
| 3119 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 3120 | | File |
| 3121 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3122 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 3123 | | models, status = func(*func_args, **func_kw) |
| 3124 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3125 | | File |
| 3126 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3127 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 3128 | | return open_command_script(session, data, file_name, **kw) |
| 3129 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3130 | | File |
| 3131 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3132 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 3133 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 3134 | | File |
| 3135 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3136 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 3137 | | run(session, cmd, log=log) |
| 3138 | | File |
| 3139 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3140 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 3141 | | results = command.run(text, log=log, return_json=return_json) |
| 3142 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3143 | | File |
| 3144 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3145 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3146 | | result = ci.function(session, **kw_args) |
| 3147 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3148 | | File |
| 3149 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3150 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 3151 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 3152 | | log=log)[0] |
| 3153 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3154 | | File |
| 3155 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3156 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3157 | | result = ci.function(session, **kw_args) |
| 3158 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3159 | | File |
| 3160 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3161 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 3162 | | models, status = collated_open(session, None, [data], data_format, |
| 3163 | | _add_models, |
| 3164 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3165 | | File |
| 3166 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3167 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 3168 | | return remember_data_format() |
| 3169 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 3170 | | File |
| 3171 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3172 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 3173 | | models, status = func(*func_args, **func_kw) |
| 3174 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3175 | | File |
| 3176 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3177 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 3178 | | return open_command_script(session, data, file_name, **kw) |
| 3179 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3180 | | File |
| 3181 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3182 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 3183 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 3184 | | File |
| 3185 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3186 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 3187 | | run(session, cmd, log=log) |
| 3188 | | File |
| 3189 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3190 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 3191 | | results = command.run(text, log=log, return_json=return_json) |
| 3192 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3193 | | File |
| 3194 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3195 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3196 | | result = ci.function(session, **kw_args) |
| 3197 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3198 | | File |
| 3199 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3200 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 3201 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 3202 | | log=log)[0] |
| 3203 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3204 | | File |
| 3205 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3206 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3207 | | result = ci.function(session, **kw_args) |
| 3208 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3209 | | File |
| 3210 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3211 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 3212 | | models, status = collated_open(session, None, [data], data_format, |
| 3213 | | _add_models, |
| 3214 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3215 | | File |
| 3216 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3217 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 3218 | | return remember_data_format() |
| 3219 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 3220 | | File |
| 3221 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3222 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 3223 | | models, status = func(*func_args, **func_kw) |
| 3224 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3225 | | File |
| 3226 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3227 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 3228 | | return open_command_script(session, data, file_name, **kw) |
| 3229 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3230 | | File |
| 3231 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3232 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 3233 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 3234 | | File |
| 3235 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3236 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 3237 | | run(session, cmd, log=log) |
| 3238 | | File |
| 3239 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3240 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 3241 | | results = command.run(text, log=log, return_json=return_json) |
| 3242 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3243 | | File |
| 3244 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3245 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3246 | | result = ci.function(session, **kw_args) |
| 3247 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3248 | | File |
| 3249 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3250 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 3251 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 3252 | | log=log)[0] |
| 3253 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3254 | | File |
| 3255 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3256 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3257 | | result = ci.function(session, **kw_args) |
| 3258 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3259 | | File |
| 3260 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3261 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 3262 | | models, status = collated_open(session, None, [data], data_format, |
| 3263 | | _add_models, |
| 3264 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3265 | | File |
| 3266 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3267 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 3268 | | return remember_data_format() |
| 3269 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 3270 | | File |
| 3271 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3272 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 3273 | | models, status = func(*func_args, **func_kw) |
| 3274 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3275 | | File |
| 3276 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3277 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 3278 | | return open_command_script(session, data, file_name, **kw) |
| 3279 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3280 | | File |
| 3281 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3282 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 3283 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 3284 | | File |
| 3285 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3286 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 3287 | | run(session, cmd, log=log) |
| 3288 | | File |
| 3289 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3290 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 3291 | | results = command.run(text, log=log, return_json=return_json) |
| 3292 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3293 | | File |
| 3294 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3295 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3296 | | result = ci.function(session, **kw_args) |
| 3297 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3298 | | File |
| 3299 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3300 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 3301 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 3302 | | log=log)[0] |
| 3303 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3304 | | File |
| 3305 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3306 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3307 | | result = ci.function(session, **kw_args) |
| 3308 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3309 | | File |
| 3310 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3311 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 3312 | | models, status = collated_open(session, None, [data], data_format, |
| 3313 | | _add_models, |
| 3314 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3315 | | File |
| 3316 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3317 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 3318 | | return remember_data_format() |
| 3319 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 3320 | | File |
| 3321 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3322 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 3323 | | models, status = func(*func_args, **func_kw) |
| 3324 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3325 | | File |
| 3326 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3327 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 3328 | | return open_command_script(session, data, file_name, **kw) |
| 3329 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3330 | | File |
| 3331 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3332 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 3333 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 3334 | | File |
| 3335 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3336 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 3337 | | run(session, cmd, log=log) |
| 3338 | | File |
| 3339 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3340 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 3341 | | results = command.run(text, log=log, return_json=return_json) |
| 3342 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3343 | | File |
| 3344 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3345 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3346 | | result = ci.function(session, **kw_args) |
| 3347 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3348 | | File |
| 3349 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3350 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 3351 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 3352 | | log=log)[0] |
| 3353 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3354 | | File |
| 3355 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3356 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3357 | | result = ci.function(session, **kw_args) |
| 3358 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3359 | | File |
| 3360 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3361 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 3362 | | models, status = collated_open(session, None, [data], data_format, |
| 3363 | | _add_models, |
| 3364 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3365 | | File |
| 3366 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3367 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 3368 | | return remember_data_format() |
| 3369 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 3370 | | File |
| 3371 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3372 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 3373 | | models, status = func(*func_args, **func_kw) |
| 3374 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3375 | | File |
| 3376 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3377 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 3378 | | return open_command_script(session, data, file_name, **kw) |
| 3379 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3380 | | File |
| 3381 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3382 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 3383 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 3384 | | File |
| 3385 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3386 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 3387 | | run(session, cmd, log=log) |
| 3388 | | File |
| 3389 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3390 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 3391 | | results = command.run(text, log=log, return_json=return_json) |
| 3392 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3393 | | File |
| 3394 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3395 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3396 | | result = ci.function(session, **kw_args) |
| 3397 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3398 | | File |
| 3399 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3400 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 3401 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 3402 | | log=log)[0] |
| 3403 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3404 | | File |
| 3405 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3406 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3407 | | result = ci.function(session, **kw_args) |
| 3408 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3409 | | File |
| 3410 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3411 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 3412 | | models, status = collated_open(session, None, [data], data_format, |
| 3413 | | _add_models, |
| 3414 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3415 | | File |
| 3416 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3417 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 3418 | | return remember_data_format() |
| 3419 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 3420 | | File |
| 3421 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3422 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 3423 | | models, status = func(*func_args, **func_kw) |
| 3424 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3425 | | File |
| 3426 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3427 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 3428 | | return open_command_script(session, data, file_name, **kw) |
| 3429 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3430 | | File |
| 3431 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3432 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 3433 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 3434 | | File |
| 3435 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3436 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 3437 | | run(session, cmd, log=log) |
| 3438 | | File |
| 3439 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3440 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 3441 | | results = command.run(text, log=log, return_json=return_json) |
| 3442 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3443 | | File |
| 3444 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3445 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3446 | | result = ci.function(session, **kw_args) |
| 3447 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3448 | | File |
| 3449 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3450 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 3451 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 3452 | | log=log)[0] |
| 3453 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3454 | | File |
| 3455 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3456 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3457 | | result = ci.function(session, **kw_args) |
| 3458 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3459 | | File |
| 3460 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3461 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 3462 | | models, status = collated_open(session, None, [data], data_format, |
| 3463 | | _add_models, |
| 3464 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3465 | | File |
| 3466 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3467 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 3468 | | return remember_data_format() |
| 3469 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 3470 | | File |
| 3471 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3472 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 3473 | | models, status = func(*func_args, **func_kw) |
| 3474 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3475 | | File |
| 3476 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3477 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 3478 | | return open_command_script(session, data, file_name, **kw) |
| 3479 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3480 | | File |
| 3481 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3482 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 3483 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 3484 | | File |
| 3485 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3486 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 3487 | | run(session, cmd, log=log) |
| 3488 | | File |
| 3489 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3490 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 3491 | | results = command.run(text, log=log, return_json=return_json) |
| 3492 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3493 | | File |
| 3494 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3495 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3496 | | result = ci.function(session, **kw_args) |
| 3497 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3498 | | File |
| 3499 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3500 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 3501 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 3502 | | log=log)[0] |
| 3503 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3504 | | File |
| 3505 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3506 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3507 | | result = ci.function(session, **kw_args) |
| 3508 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3509 | | File |
| 3510 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3511 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 3512 | | models, status = collated_open(session, None, [data], data_format, |
| 3513 | | _add_models, |
| 3514 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3515 | | File |
| 3516 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3517 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 3518 | | return remember_data_format() |
| 3519 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 3520 | | File |
| 3521 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3522 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 3523 | | models, status = func(*func_args, **func_kw) |
| 3524 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3525 | | File |
| 3526 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3527 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 3528 | | return open_command_script(session, data, file_name, **kw) |
| 3529 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3530 | | File |
| 3531 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3532 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 3533 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 3534 | | File |
| 3535 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3536 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 3537 | | run(session, cmd, log=log) |
| 3538 | | File |
| 3539 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3540 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 3541 | | results = command.run(text, log=log, return_json=return_json) |
| 3542 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3543 | | File |
| 3544 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3545 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3546 | | result = ci.function(session, **kw_args) |
| 3547 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3548 | | File |
| 3549 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3550 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 3551 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 3552 | | log=log)[0] |
| 3553 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3554 | | File |
| 3555 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3556 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3557 | | result = ci.function(session, **kw_args) |
| 3558 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3559 | | File |
| 3560 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3561 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 3562 | | models, status = collated_open(session, None, [data], data_format, |
| 3563 | | _add_models, |
| 3564 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3565 | | File |
| 3566 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3567 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 3568 | | return remember_data_format() |
| 3569 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 3570 | | File |
| 3571 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3572 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 3573 | | models, status = func(*func_args, **func_kw) |
| 3574 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3575 | | File |
| 3576 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3577 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 3578 | | return open_command_script(session, data, file_name, **kw) |
| 3579 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3580 | | File |
| 3581 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3582 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 3583 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 3584 | | File |
| 3585 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3586 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 3587 | | run(session, cmd, log=log) |
| 3588 | | File |
| 3589 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3590 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 3591 | | results = command.run(text, log=log, return_json=return_json) |
| 3592 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3593 | | File |
| 3594 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3595 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3596 | | result = ci.function(session, **kw_args) |
| 3597 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3598 | | File |
| 3599 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3600 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 3601 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 3602 | | log=log)[0] |
| 3603 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3604 | | File |
| 3605 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3606 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3607 | | result = ci.function(session, **kw_args) |
| 3608 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3609 | | File |
| 3610 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3611 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 3612 | | models, status = collated_open(session, None, [data], data_format, |
| 3613 | | _add_models, |
| 3614 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3615 | | File |
| 3616 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3617 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 3618 | | return remember_data_format() |
| 3619 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 3620 | | File |
| 3621 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3622 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 3623 | | models, status = func(*func_args, **func_kw) |
| 3624 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3625 | | File |
| 3626 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3627 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 3628 | | return open_command_script(session, data, file_name, **kw) |
| 3629 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3630 | | File |
| 3631 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3632 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 3633 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 3634 | | File |
| 3635 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3636 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 3637 | | run(session, cmd, log=log) |
| 3638 | | File |
| 3639 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3640 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 3641 | | results = command.run(text, log=log, return_json=return_json) |
| 3642 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3643 | | File |
| 3644 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3645 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3646 | | result = ci.function(session, **kw_args) |
| 3647 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3648 | | File |
| 3649 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3650 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 3651 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 3652 | | log=log)[0] |
| 3653 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3654 | | File |
| 3655 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3656 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3657 | | result = ci.function(session, **kw_args) |
| 3658 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3659 | | File |
| 3660 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3661 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 3662 | | models, status = collated_open(session, None, [data], data_format, |
| 3663 | | _add_models, |
| 3664 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3665 | | File |
| 3666 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3667 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 3668 | | return remember_data_format() |
| 3669 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 3670 | | File |
| 3671 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3672 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 3673 | | models, status = func(*func_args, **func_kw) |
| 3674 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3675 | | File |
| 3676 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3677 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 3678 | | return open_command_script(session, data, file_name, **kw) |
| 3679 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3680 | | File |
| 3681 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3682 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 3683 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 3684 | | File |
| 3685 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3686 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 3687 | | run(session, cmd, log=log) |
| 3688 | | File |
| 3689 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3690 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 3691 | | results = command.run(text, log=log, return_json=return_json) |
| 3692 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3693 | | File |
| 3694 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3695 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3696 | | result = ci.function(session, **kw_args) |
| 3697 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3698 | | File |
| 3699 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3700 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 3701 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 3702 | | log=log)[0] |
| 3703 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3704 | | File |
| 3705 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3706 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3707 | | result = ci.function(session, **kw_args) |
| 3708 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3709 | | File |
| 3710 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3711 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 3712 | | models, status = collated_open(session, None, [data], data_format, |
| 3713 | | _add_models, |
| 3714 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3715 | | File |
| 3716 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3717 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 3718 | | return remember_data_format() |
| 3719 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 3720 | | File |
| 3721 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3722 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 3723 | | models, status = func(*func_args, **func_kw) |
| 3724 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3725 | | File |
| 3726 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3727 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 3728 | | return open_command_script(session, data, file_name, **kw) |
| 3729 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3730 | | File |
| 3731 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3732 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 3733 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 3734 | | File |
| 3735 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3736 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 3737 | | run(session, cmd, log=log) |
| 3738 | | File |
| 3739 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3740 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 3741 | | results = command.run(text, log=log, return_json=return_json) |
| 3742 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3743 | | File |
| 3744 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3745 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3746 | | result = ci.function(session, **kw_args) |
| 3747 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3748 | | File |
| 3749 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3750 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 3751 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 3752 | | log=log)[0] |
| 3753 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3754 | | File |
| 3755 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3756 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3757 | | result = ci.function(session, **kw_args) |
| 3758 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3759 | | File |
| 3760 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3761 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 3762 | | models, status = collated_open(session, None, [data], data_format, |
| 3763 | | _add_models, |
| 3764 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3765 | | File |
| 3766 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3767 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 3768 | | return remember_data_format() |
| 3769 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 3770 | | File |
| 3771 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3772 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 3773 | | models, status = func(*func_args, **func_kw) |
| 3774 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3775 | | File |
| 3776 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3777 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 3778 | | return open_command_script(session, data, file_name, **kw) |
| 3779 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3780 | | File |
| 3781 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3782 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 3783 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 3784 | | File |
| 3785 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3786 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 3787 | | run(session, cmd, log=log) |
| 3788 | | File |
| 3789 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3790 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 3791 | | results = command.run(text, log=log, return_json=return_json) |
| 3792 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3793 | | File |
| 3794 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3795 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3796 | | result = ci.function(session, **kw_args) |
| 3797 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3798 | | File |
| 3799 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3800 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 3801 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 3802 | | log=log)[0] |
| 3803 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3804 | | File |
| 3805 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3806 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3807 | | result = ci.function(session, **kw_args) |
| 3808 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3809 | | File |
| 3810 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3811 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 3812 | | models, status = collated_open(session, None, [data], data_format, |
| 3813 | | _add_models, |
| 3814 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3815 | | File |
| 3816 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3817 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 3818 | | return remember_data_format() |
| 3819 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 3820 | | File |
| 3821 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3822 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 3823 | | models, status = func(*func_args, **func_kw) |
| 3824 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3825 | | File |
| 3826 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3827 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 3828 | | return open_command_script(session, data, file_name, **kw) |
| 3829 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3830 | | File |
| 3831 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3832 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 3833 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 3834 | | File |
| 3835 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3836 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 3837 | | run(session, cmd, log=log) |
| 3838 | | File |
| 3839 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3840 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 3841 | | results = command.run(text, log=log, return_json=return_json) |
| 3842 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3843 | | File |
| 3844 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3845 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3846 | | result = ci.function(session, **kw_args) |
| 3847 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3848 | | File |
| 3849 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3850 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 3851 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 3852 | | log=log)[0] |
| 3853 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3854 | | File |
| 3855 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3856 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3857 | | result = ci.function(session, **kw_args) |
| 3858 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3859 | | File |
| 3860 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3861 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 3862 | | models, status = collated_open(session, None, [data], data_format, |
| 3863 | | _add_models, |
| 3864 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3865 | | File |
| 3866 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3867 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 3868 | | return remember_data_format() |
| 3869 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 3870 | | File |
| 3871 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3872 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 3873 | | models, status = func(*func_args, **func_kw) |
| 3874 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3875 | | File |
| 3876 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3877 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 3878 | | return open_command_script(session, data, file_name, **kw) |
| 3879 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3880 | | File |
| 3881 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3882 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 3883 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 3884 | | File |
| 3885 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3886 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 3887 | | run(session, cmd, log=log) |
| 3888 | | File |
| 3889 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3890 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 3891 | | results = command.run(text, log=log, return_json=return_json) |
| 3892 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3893 | | File |
| 3894 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3895 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3896 | | result = ci.function(session, **kw_args) |
| 3897 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3898 | | File |
| 3899 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3900 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 3901 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 3902 | | log=log)[0] |
| 3903 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3904 | | File |
| 3905 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3906 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3907 | | result = ci.function(session, **kw_args) |
| 3908 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3909 | | File |
| 3910 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3911 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 3912 | | models, status = collated_open(session, None, [data], data_format, |
| 3913 | | _add_models, |
| 3914 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3915 | | File |
| 3916 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3917 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 3918 | | return remember_data_format() |
| 3919 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 3920 | | File |
| 3921 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3922 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 3923 | | models, status = func(*func_args, **func_kw) |
| 3924 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3925 | | File |
| 3926 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3927 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 3928 | | return open_command_script(session, data, file_name, **kw) |
| 3929 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3930 | | File |
| 3931 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3932 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 3933 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 3934 | | File |
| 3935 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3936 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 3937 | | run(session, cmd, log=log) |
| 3938 | | File |
| 3939 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3940 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 3941 | | results = command.run(text, log=log, return_json=return_json) |
| 3942 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3943 | | File |
| 3944 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3945 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3946 | | result = ci.function(session, **kw_args) |
| 3947 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3948 | | File |
| 3949 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3950 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 3951 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 3952 | | log=log)[0] |
| 3953 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3954 | | File |
| 3955 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3956 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3957 | | result = ci.function(session, **kw_args) |
| 3958 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3959 | | File |
| 3960 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3961 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 3962 | | models, status = collated_open(session, None, [data], data_format, |
| 3963 | | _add_models, |
| 3964 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3965 | | File |
| 3966 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3967 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 3968 | | return remember_data_format() |
| 3969 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 3970 | | File |
| 3971 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3972 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 3973 | | models, status = func(*func_args, **func_kw) |
| 3974 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3975 | | File |
| 3976 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3977 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 3978 | | return open_command_script(session, data, file_name, **kw) |
| 3979 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3980 | | File |
| 3981 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3982 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 3983 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 3984 | | File |
| 3985 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3986 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 3987 | | run(session, cmd, log=log) |
| 3988 | | File |
| 3989 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3990 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 3991 | | results = command.run(text, log=log, return_json=return_json) |
| 3992 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3993 | | File |
| 3994 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 3995 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 3996 | | result = ci.function(session, **kw_args) |
| 3997 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 3998 | | File |
| 3999 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4000 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 4001 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 4002 | | log=log)[0] |
| 4003 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 4004 | | File |
| 4005 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4006 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 4007 | | result = ci.function(session, **kw_args) |
| 4008 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 4009 | | File |
| 4010 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4011 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 4012 | | models, status = collated_open(session, None, [data], data_format, |
| 4013 | | _add_models, |
| 4014 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 4015 | | File |
| 4016 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4017 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 4018 | | return remember_data_format() |
| 4019 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 4020 | | File |
| 4021 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4022 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 4023 | | models, status = func(*func_args, **func_kw) |
| 4024 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 4025 | | File |
| 4026 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4027 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 4028 | | return open_command_script(session, data, file_name, **kw) |
| 4029 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 4030 | | File |
| 4031 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4032 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 4033 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 4034 | | File |
| 4035 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4036 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 4037 | | run(session, cmd, log=log) |
| 4038 | | File |
| 4039 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4040 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 4041 | | results = command.run(text, log=log, return_json=return_json) |
| 4042 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 4043 | | File |
| 4044 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4045 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 4046 | | result = ci.function(session, **kw_args) |
| 4047 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 4048 | | File |
| 4049 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4050 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 4051 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 4052 | | log=log)[0] |
| 4053 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 4054 | | File |
| 4055 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4056 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 4057 | | result = ci.function(session, **kw_args) |
| 4058 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 4059 | | File |
| 4060 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4061 | | packages/chimerax/open_command/cmd.py", line 215, in provider_open |
| 4062 | | models, status = collated_open(session, None, [data], data_format, |
| 4063 | | _add_models, |
| 4064 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 4065 | | File |
| 4066 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4067 | | packages/chimerax/open_command/cmd.py", line 509, in collated_open |
| 4068 | | return remember_data_format() |
| 4069 | | ^^^^^^^^^^^^^^^^^^^^^^ |
| 4070 | | File |
| 4071 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4072 | | packages/chimerax/open_command/cmd.py", line 497, in remember_data_format |
| 4073 | | models, status = func(*func_args, **func_kw) |
| 4074 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 4075 | | File |
| 4076 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4077 | | packages/chimerax/core_formats/__init__.py", line 48, in open |
| 4078 | | return open_command_script(session, data, file_name, **kw) |
| 4079 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 4080 | | File |
| 4081 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4082 | | packages/chimerax/core/scripting.py", line 171, in open_command_script |
| 4083 | | _run_commands(session, commands, directory = dirname(path), log = log) |
| 4084 | | File |
| 4085 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4086 | | packages/chimerax/core/scripting.py", line 184, in _run_commands |
| 4087 | | run(session, cmd, log=log) |
| 4088 | | File |
| 4089 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4090 | | packages/chimerax/core/commands/run.py", line 49, in run |
| 4091 | | results = command.run(text, log=log, return_json=return_json) |
| 4092 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 4093 | | File |
| 4094 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4095 | | packages/chimerax/core/commands/cli.py", line 3213, in run |
| 4096 | | result = ci.function(session, **kw_args) |
| 4097 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| 4098 | | File |
| 4099 | | "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- |
| 4100 | | packages/chimerax/open_command/cmd.py", line 132, in cmd_open |
| 4101 | | models = Command(session, registry=registry).run(provider_cmd_text, |
| 4102 | | log=log)[0] |
| 4103 | | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| | 1109 | [deleted to fit within ticket limits] |
| | 1110 | |