![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 months ago
Last modified 3 months ago
#18209 closed defect
Crash on Mac waking from sleep — at Version 1
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: macOS-15.5-x86_64-i386-64bit
ChimeraX Version: 1.10 (2025-06-26 08:57:52 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
Fatal Python error: Segmentation fault
Current thread 0x00007ff858663dc0 (most recent call first):
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 368 in event_loop
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1057 in init
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.map._map, psutil._psutil_osx, psutil._psutil_posix, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, PIL._imaging, PIL._imagingmath, chimerax.graphics._graphics, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atom_search.ast, chimerax.chem_group._chem_group, chimerax.coulombic._esp (total: 51)
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{
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"procRole" : "Background",
"version" : 2,
"userID" : 502,
"deployVersion" : 210,
"modelCode" : "MacBookPro16,1",
"coalitionID" : 10277,
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"build" : "24F74",
"releaseType" : "User"
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"captureTime" : "2025-07-16 14:45:46.4256 +0200",
"codeSigningMonitor" : 0,
"incident" : "2D9D0431-EA03-48D3-9B3F-D2D6C16D10C7",
"pid" : 57931,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-07-11 19:28:26.7883 +0200",
"procStartAbsTime" : 26802715046332,
"procExitAbsTime" : 243484592994489,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.10.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.10.0","CFBundleVersion":"1.10.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"1B621CC7-A08E-58E5-A30C-B64306F232D4","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "5A8EFE95-C9B8-50CB-3111-3AE68D059CBA",
"appleIntelligenceStatus" : {"reasons":["deviceNotCapable"],"state":"unavailable"},
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"codeSigningAuxiliaryInfo" : 0,
"bootSessionUUID" : "307A6ACD-CC28-48CD-9F2C-F0D24696DF61",
"wakeTime" : 10894,
"bridgeVersion" : {"build":"22P5072","train":"9.5"},
"sleepWakeUUID" : "0EBDBC43-D5BB-4AFF-958D-7DBBCCF64647",
"sip" : "enabled",
"vmRegionInfo" : "0 is not in any region. Bytes before following region: 4515893248\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 10d2b1000-10d2b5000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.10.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x000000000000000d, 0x0000000000000000","rawCodes":[13,0],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"UNKNOWN_0xD at 0x0000000000000000"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":57931},
"vmregioninfo" : "0 is not in any region. Bytes before following region: 4515893248\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 10d2b1000-10d2b5000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.10.app\/Contents\/MacOS\/ChimeraX",
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"faultingThread" : 0,
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QDeadlineTimer)","symbolLocation":84,"imageIndex":45},{"imageOffset":5265794,"symbol":"QFileInfoGatherer::run()","symbolLocation":178,"imageIndex":50},{"imageOffset":2324203,"imageIndex":45},{"imageOffset":24049,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":140},{"imageOffset":6231,"symbol":"thread_start","symbolLocation":15,"imageIndex":140}]},{"id":9625957,"frames":[{"imageOffset":6196,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":140}],"threadState":{"r13":{"value":0},"rax":{"value":33554800},"rflags":{"value":512},"cpu":{"value":0},"r14":{"value":1},"rsi":{"value":258063},"r8":{"value":409604},"cr2":{"value":0},"rdx":{"value":123145493471232},"r10":{"value":0},"r9":{"value":18446744073709551615},"r15":{"value":123145493994360},"rbx":{"value":123145493995520},"trap":{"value":133},"err":{"value":33554800},"r11":{"value":582},"rip":{"value":140703510665268},"rbp":{"value":0},"rsp":{"value":123145493995520},"r12":{"value":5193734},"rcx":{"value":0},"flavor":"x86_THREAD_STATE","rdi":{"value":123145493995520}}},{"id":9636378,"frames":[{"imageOffset":6196,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":140}],"threadState":{"r13":{"value":0},"rax":{"value":33554800},"rflags":{"value":512},"cpu":{"value":0},"r14":{"value":1},"rsi":{"value":233503},"r8":{"value":409602},"cr2":{"value":0},"rdx":{"value":123145654161408},"r10":{"value":0},"r9":{"value":18446744073709551615},"r15":{"value":123145654684536},"rbx":{"value":123145654685696},"trap":{"value":133},"err":{"value":33554800},"r11":{"value":582},"rip":{"value":140703510665268},"rbp":{"value":0},"rsp":{"value":123145654685696},"r12":{"value":5193730},"rcx":{"value":0},"flavor":"x86_THREAD_STATE","rdi":{"value":123145654685696}}},{"id":9636964,"frames":[{"imageOffset":6196,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":140}],"threadState":{"r13":{"value":0},"rax":{"value":33554800},"rflags":{"value":512},"cpu":{"value":0},"r14":{"value":0},"rsi":{"value":109215},"r8":{"value":409604},"cr2":{"value":0},"rdx":{"value":123145654697984},"r10":{"value":0},"r9":{"value":18446744073709551615},"r15":{"value":0},"rbx":{"value":123145655222272},"trap":{"value":133},"err":{"value":33554800},"r11":{"value":582},"rip":{"value":140703510665268},"rbp":{"value":0},"rsp":{"value":123145655222272},"r12":{"value":0},"rcx":{"value":0},"flavor":"x86_THREAD_STATE","rdi":{"value":123145655222272}}}],
"usedImages" : [
[deleted to fit within ticket limits]
],
"sharedCache" : {
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"size" : 30064771072,
"uuid" : "57b0c2b8-36d6-3cf0-8bd0-0ac6133ec8b3"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.6G resident=0K(0%) swapped_out_or_unallocated=1.6G(100%)\nWritable regions: Total=13.3G written=375.8M(3%) resident=0K(0%) swapped_out=375.8M(3%) unallocated=12.9G(97%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG backing stores 9276K 1 \nCG image 592K 44 \nCG raster data 100K 8 \nColorSync 264K 33 \nCoreAnimation 976K 107 \nCoreGraphics 16K 3 \nCoreUI image data 5208K 43 \nFoundation 36K 2 \nIOKit 23.3M 3 \nKernel Alloc Once 8K 1 \nMALLOC 12.3G 2988 \nMALLOC guard page 48K 12 \nMALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)\nMach message 16K 2 \nOpenGL GLSL 384K 4 \nSTACK GUARD 156K 39 \nStack 192.8M 40 \nStack Guard 56.0M 1 \nVM_ALLOCATE 624.6M 538 \nVM_ALLOCATE (reserved) 128.0M 2 reserved VM address space (unallocated)\n__CTF 824 1 \n__DATA 45.0M 1095 \n__DATA_CONST 123.4M 1036 \n__DATA_DIRTY 2590K 343 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 192.0M 141 \n__OBJC_RO 61.3M 1 \n__OBJC_RW 2395K 2 \n__TEXT 1.4G 1114 \n__TPRO_CONST 16 2 \ndyld private memory 1608K 14 \nmapped file 561.7M 84 \nshared memory 3548K 37 \n=========== ======= ======= \nTOTAL 15.7G 7748 \nTOTAL, minus reserved VM space 15.6G 7748 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
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"logWritingSignature" : "b502cdb94368407f9118fa5f15a9a4a3ff8e9234",
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===== Log before crash start =====
UCSF ChimeraX version: 1.10 (2025-06-26)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/map_for_refinement/final map for
> figures/cryosparc_P9_J711_HIGD2A.mrc"
Opened cryosparc_P9_J711_HIGD2A.mrc as #1, grid size 600,600,600, pixel 0.84,
shown at level 0.102, step 4, values float32
> volume #1 level 0.2413
> open "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/map_for_refinement/final map for
> figures/cryosparc_P9_J716_map_locres-class1-complexIV.mrc"
Opened cryosparc_P9_J716_map_locres-class1-complexIV.mrc as #2, grid size
600,600,600, pixel 0.84, shown at level 0.00241, step 4, values float32
> volume #1 level 0.2878
> ui tool show "Surface Color"
> color sample #1.1 map #2 palette
> 2.5,#0000ff:3.5,#00aaff:4.5,#00ffa9:5.5,#00ff00:6.5,#aaff00:7.5,#ffaa00:40,#ff0000
> outsideColor #808080
Map values for surface "surface": minimum 0, mean 3.889, maximum 42.89
> hide #!2 models
[deleted to fit within ticket limits]
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select #4/B:60
15 atoms, 14 bonds, 1 residue, 1 model selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select up
64 atoms, 63 bonds, 4 residues, 1 model selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select up
3539 atoms, 3584 bonds, 222 residues, 1 model selected
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> color bfactor sel key true
> key blue-white-red :59 :109 :159 showTool true
3539 atoms, 222 residues, atom bfactor range 59.3 to 159
> show #3 models
> select clear
> save "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/C14_supercomplex_project/HIGD2A-Manuscript/revise/figure
> revise/B factor cox 2 NDUFA4 bound.png" width 1500 height 1387 supersample 3
> transparentBackground true
> hide #3 models
> select #4/B:62
15 atoms, 14 bonds, 1 residue, 1 model selected
> hide #!4 models
> select add #4
30740 atoms, 31201 bonds, 26 pseudobonds, 1862 residues, 2 models selected
> select subtract #4
Nothing selected
> show #!1 models
> ui tool show "Surface Color"
> color sample #1.1 map #2 palette
> 2.5,#0000ff:3.5,#00aaff:4.5,#00ffa9:5.5,#00ff00:6.5,#aaff00:7.5,#ffaa00:30,#ff0000
> outsideColor #808080
Map values for surface "surface": minimum 0, mean 3.865, maximum 43.55
Map values for surface "cap far": minimum 2.706, mean 3.656, maximum 7.562
> color sample #1.1 map #2 palette
> 2.5,#0000ff:3.5,#00aaff:4.5,#00ffa9:5.5,#00ff00:6.5,#aaff00:7.5,#ffaa00:30,#ff0000
> outsideColor #808080
Map values for surface "surface": minimum 0, mean 3.865, maximum 43.55
Map values for surface "cap far": minimum 2.706, mean 3.656, maximum 7.562
> show #!11 models
> hide #!1 models
> volume #11 level 0.3441
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!11 models
> show #!1 models
> volume #1 level 0.3278
> show #!14 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> show #!4,14 cartoons
> select add #4
30740 atoms, 31201 bonds, 26 pseudobonds, 1862 residues, 2 models selected
> show sel cartoons
> select subtract #4
Nothing selected
> select add #14
30444 atoms, 30892 bonds, 23 pseudobonds, 1849 residues, 2 models selected
> show sel cartoons
> select subtract #14
14 models selected
> select ::name="PGV"
432 atoms, 428 bonds, 4 residues, 4 models selected
> show sel & #!4,14 atoms
> select add #13
30785 atoms, 31220 bonds, 19 pseudobonds, 1852 residues, 5 models selected
> select subtract #13
305 atoms, 302 bonds, 3 residues, 17 models selected
> hide #!1 models
> show #!1 models
> hide sel & #!4,14 atoms
> select add #4
30918 atoms, 31377 bonds, 26 pseudobonds, 1864 residues, 4 models selected
> select subtract #4
178 atoms, 176 bonds, 2 residues, 2 models selected
> select add #5
15280 atoms, 15721 bonds, 7 pseudobonds, 1850 residues, 4 models selected
> select subtract #5
127 atoms, 126 bonds, 1 residue, 3 models selected
> hide #!4 models
> hide #!1 models
> show #!11 models
> select add #14
30444 atoms, 30892 bonds, 23 pseudobonds, 1849 residues, 2 models selected
> select subtract #14
14 models selected
> hide #!14 models
> show #!4 models
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> volume #11 level 0.3
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> volume #11 level 0.28
> select #4/B:62@CD
1 atom, 1 residue, 1 model selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select up
15 atoms, 14 bonds, 1 residue, 1 model selected
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> volume zone #11 nearAtoms sel range 5 newMap true
Opened cryosparc_P9_J715_NDUFA4.mrc zone as #15, grid size 600,600,600, pixel
0.84, shown at step 1, values float32
> volume #15 level 0.2653
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> volume zone #11 nearAtoms sel range 3.5 newMap true
Opened cryosparc_P9_J715_NDUFA4.mrc zone as #16, grid size 600,600,600, pixel
0.84, shown at step 1, values float32
> hide #!15 models
> hide #!16 models
> show #!16 models
> hide #!16 models
> show #!14 models
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.10 (2025-06-26)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-7.0.3
OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,1
Processor Name: 8-Core Intel Core i9
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 256 KB
L3 Cache: 16 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 2075.120.2.0.0 (iBridge: 22.16.15072.0.0,0)
OS Loader Version: 583~1350
Software:
System Software Overview:
System Version: macOS 15.5 (24F74)
Kernel Version: Darwin 24.5.0
Time since boot: 5 days, 11 hours, 9 minutes
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0002
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
AMD Radeon Pro 5500M:
Chipset Model: AMD Radeon Pro 5500M
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 4 GB
Vendor: AMD (0x1002)
Device ID: 0x7340
Revision ID: 0x0040
ROM Revision: 113-D3220E-190
VBIOS Version: 113-D32206U1-020
Option ROM Version: 113-D32206U1-020
EFI Driver Version: 01.A1.190
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 3072 x 1920 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
DELL P2319H:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: B7HMY43
Mirror: Off
Online: Yes
Rotation: Supported
Connection Type: DVI or HDMI
Adapter Firmware Version: 2.4a
Installed Packages:
alabaster: 1.0.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.4.0
babel: 2.17.0
beautifulsoup4: 4.13.3
blockdiag: 3.0.0
blosc2: 3.5.0
build: 1.2.2.post1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.2
ChimeraX-AddCharge: 1.5.19
ChimeraX-AddH: 2.2.7
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.20.2
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Aniso: 1.1.4
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.60.7
ChimeraX-AtomicLibrary: 14.1.18
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.5.1
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.10
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.1
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.6.2
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.10.1
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.19
ChimeraX-ModelPanel: 1.5.1
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14.1
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.10
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.3
ChimeraX-ProfileGrids: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.7
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.1
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.45.2
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.2
coverage: 7.9.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.12
debugpy: 1.8.14
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.0
filelock: 3.18.0
fonttools: 4.58.4
funcparserlib: 2.0.0a0
glfw: 2.9.0
grako: 3.16.5
h5py: 3.14.0
html2text: 2024.2.26
idna: 3.10
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.1.0
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.7
jedi: 0.19.1
Jinja2: 3.1.6
jupyter_client: 8.6.3
jupyter_core: 5.8.1
jupyterlab_widgets: 3.0.15
kiwisolver: 1.4.8
line_profiler: 4.2.0
lxml: 5.3.1
lz4: 4.4.4
MarkupSafe: 3.0.2
matplotlib: 3.10.1
matplotlib-inline: 0.1.7
msgpack: 1.1.0
ndindex: 1.10.0
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.11.0
numpy: 1.26.4
OpenMM: 8.2.0
openvr: 1.26.701
packaging: 24.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.4.0
pip: 25.0.1
pkginfo: 1.11.1
platformdirs: 4.3.8
pluggy: 1.6.0
prompt_toolkit: 3.0.51
psutil: 7.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.32
Pygments: 2.18.0
pynmrstar: 3.3.5
pynrrd: 1.0.0
PyOpenGL: 3.1.9
PyOpenGL-accelerate: 3.1.9
pyopenxr: 1.1.4501
pyparsing: 3.2.3
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.8.1
PyQt6-Qt6: 6.8.2
PyQt6-WebEngine-commercial: 6.8.0
PyQt6-WebEngine-Qt6: 6.8.2
PyQt6_sip: 13.10.0
pytest: 8.4.1
pytest-cov: 6.2.1
python-dateutil: 2.9.0.post0
pytz: 2025.2
pyzmq: 27.0.0
qtconsole: 5.5.2
QtPy: 2.4.3
qtshim: 1.1
RandomWords: 0.4.0
requests: 2.32.3
roman-numerals-py: 3.1.0
scipy: 1.14.0
setuptools: 78.1.0
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.7
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.1.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.7.1
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.4
tornado: 6.5.1
traitlets: 5.14.3
typing_extensions: 4.14.0
tzdata: 2025.2
urllib3: 2.5.0
wcwidth: 0.2.13
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.14
Change History (1)
comment:1 by , 3 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
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Reported by Duc Nguyen