![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 months ago
Last modified 3 months ago
#18209 closed defect
ChimeraX bug report submission — at Initial Version
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.5-x86_64-i386-64bit
ChimeraX Version: 1.10 (2025-06-26 08:57:52 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
Fatal Python error: Segmentation fault
Current thread 0x00007ff858663dc0 (most recent call first):
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 368 in event_loop
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1057 in init
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.map._map, psutil._psutil_osx, psutil._psutil_posix, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, PIL._imaging, PIL._imagingmath, chimerax.graphics._graphics, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atom_search.ast, chimerax.chem_group._chem_group, chimerax.coulombic._esp (total: 51)
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"procLaunch" : "2025-07-11 19:28:26.7883 +0200",
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"procExitAbsTime" : 243484592994489,
"procName" : "ChimeraX",
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"crashReporterKey" : "5A8EFE95-C9B8-50CB-3111-3AE68D059CBA",
"appleIntelligenceStatus" : {"reasons":["deviceNotCapable"],"state":"unavailable"},
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
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"bootSessionUUID" : "307A6ACD-CC28-48CD-9F2C-F0D24696DF61",
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"sleepWakeUUID" : "0EBDBC43-D5BB-4AFF-958D-7DBBCCF64647",
"sip" : "enabled",
"vmRegionInfo" : "0 is not in any region. Bytes before following region: 4515893248\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 10d2b1000-10d2b5000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.10.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x000000000000000d, 0x0000000000000000","rawCodes":[13,0],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"UNKNOWN_0xD at 0x0000000000000000"},
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"faultingThread" : 0,
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===== Log before crash start =====
UCSF ChimeraX version: 1.10 (2025-06-26)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/map_for_refinement/final map for
> figures/cryosparc_P9_J711_HIGD2A.mrc"
Opened cryosparc_P9_J711_HIGD2A.mrc as #1, grid size 600,600,600, pixel 0.84,
shown at level 0.102, step 4, values float32
> volume #1 level 0.2413
> open "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/map_for_refinement/final map for
> figures/cryosparc_P9_J716_map_locres-class1-complexIV.mrc"
Opened cryosparc_P9_J716_map_locres-class1-complexIV.mrc as #2, grid size
600,600,600, pixel 0.84, shown at level 0.00241, step 4, values float32
> volume #1 level 0.2878
> ui tool show "Surface Color"
> color sample #1.1 map #2 palette
> 2.5,#0000ff:3.5,#00aaff:4.5,#00ffa9:5.5,#00ff00:6.5,#aaff00:7.5,#ffaa00:40,#ff0000
> outsideColor #808080
Map values for surface "surface": minimum 0, mean 3.889, maximum 42.89
> hide #!2 models
> key blue:2.5 #00aaff:3.5 #00ffa9:4.5 lime:5.5 #aaff00:6.5 #ffaa00:7.5
> red:9.0 showTool true
> ui mousemode right "color key"
> key pos 0.807753,0.117165 size 0.0992259,0.592597
> key fontSize 25
> key fontSize 26
> key fontSize 27
> key fontSize 28
> set bgColor white
> volume #1 step 1
> surface dust #1 size 8.4
> ui tool show "Side View"
> color sample #1.1 map #2 palette
> 2.5,#0000ff:3.5,#00aaff:4.5,#00ffa9:5.5,#00ff00:6.5,#aaff00:7.5,#ffaa00:30,#ff0000
> outsideColor #808080
Map values for surface "surface": minimum 0, mean 3.907, maximum 43.7
Map values for surface "cap near": minimum 2.726, mean 3.826, maximum 38.21
> volume #1 level 0.3176
> volume #1 level 0.2997
> save "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/C14_supercomplex_project/HIGD2A-Manuscript/revise/figure
> revise/complex IV local resolution/class 1-1.png" width 1500 height 1229
> supersample 3 transparentBackground true
> open /Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/map_for_refinement/complex4_NDUFA4_real_space_refined_059-coot-2.pdb
Summary of feedback from opening
/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
KarolinskaInstitutet/KI/map_for_refinement/complex4_NDUFA4_real_space_refined_059-coot-2.pdb
---
warnings | Cannot find LINK/SSBOND residue CU (302 )
Cannot find LINK/SSBOND residue CU (302 )
Cannot find LINK/SSBOND residue CU (2 )
Cannot find LINK/SSBOND residue CU (2 )
note | Combining 2 symmetry atoms into HEA /A:607 FE
Chain information for complex4_NDUFA4_real_space_refined_059-coot-2.pdb #4
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
> hide #!4 models
> open "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/map_for_refinement/complex IV/full-model-
> plusHIGD2AtoJ616-localrefinement-
> COX3-HIGD2A-1-coot-40_real_space_refined_172.pdb"
Summary of feedback from opening
/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
KarolinskaInstitutet/KI/map_for_refinement/complex IV/full-model-
plusHIGD2AtoJ616-localrefinement-
COX3-HIGD2A-1-coot-40_real_space_refined_172.pdb
---
warnings | Ignored bad PDB record found on line 58
Ignored bad PDB record found on line 61
REMARK 3 TRP 0.043 0.002 TRP C 258
Ignored bad PDB record found on line 62
REMARK 3 HIS 0.012 0.001 HIS C 71
Ignored bad PDB record found on line 63
REMARK 3 PHE 0.043 0.001 PHE H 82
Ignored bad PDB record found on line 64
REMARK 3 TYR 0.042 0.002 TYR A 440
1 messages similar to the above omitted
Chain information for full-model-plusHIGD2AtoJ616-localrefinement-
COX3-HIGD2A-1-coot-40_real_space_refined_172.pdb #5
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
> hide #!5 atoms
> show #!5 cartoons
> hide #!5 atoms
> select #5/N
584 atoms, 594 bonds, 76 residues, 1 model selected
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> volume zone #1 nearAtoms sel range 5 newMap true
Opened cryosparc_P9_J711_HIGD2A.mrc zone as #6, grid size 600,600,600, pixel
0.84, shown at step 1, values float32
> color sample #6.1 map #2 palette
> 2.5,#0000ff:3.5,#00aaff:4.5,#00ffa9:5.5,#00ff00:6.5,#aaff00:7.5,#ffaa00:30,#ff0000
> outsideColor #808080
Map values for surface "surface": minimum 2.724, mean 4.674, maximum 37.57
> surface dust #6 size 8.4
> hide #!5 models
> hide #!6 models
> show #!1 models
> open "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/map_for_refinement/final map for
> figures/cryosparc_P9_J712_HIGD2AandincomingNDUFA4.mrc"
Opened cryosparc_P9_J712_HIGD2AandincomingNDUFA4.mrc as #7, grid size
600,600,600, pixel 0.84, shown at level 0.112, step 4, values float32
> volume #7 level 0.2793
> hide #!1 models
> open "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/map_for_refinement/final map for
> figures/cryosparc_P9_J720_map_locres_class2-complexIV.mrc"
Opened cryosparc_P9_J720_map_locres_class2-complexIV.mrc as #8, grid size
600,600,600, pixel 0.84, shown at level 0.00287, step 4, values float32
> color sample #7.1 map #8 palette
> 2.5,#0000ff:3.5,#00aaff:4.5,#00ffa9:5.5,#00ff00:6.5,#aaff00:7.5,#ffaa00:30,#ff0000
> outsideColor #808080
Map values for surface "surface": minimum 0, mean 5.235, maximum 47.07
> hide #!8 models
> volume #7 step 1
> volume #7 level 0.3385
> volume #7 level 0.303
> surface dust #7 size 8.4
> color sample #7.1 map #8 palette
> 2.5,#0000ff:3.5,#00aaff:4.5,#00ffa9:5.5,#00ff00:6.5,#aaff00:7.5,#ffaa00:40,#ff0000
> outsideColor #808080
Map values for surface "surface": minimum 0, mean 5.174, maximum 54.57
> volume #7 level 0.307
> volume #7 level 0.3109
> volume #7 level 0.2951
Unsupported scale factor (0.000000) detected on Display0
> open "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/map_for_refinement/final map for
> figures/cryosparc_P9_J708_NDUFA4andpartialHIGD2A.mrc"
Opened cryosparc_P9_J708_NDUFA4andpartialHIGD2A.mrc as #9, grid size
600,600,600, pixel 0.84, shown at level 0.111, step 4, values float32
> hide #!7 models
> volume #9 level 0.2364
> open "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/map_for_refinement/final map for
> figures/cryosparc_P9_J721_map_locres_class3_complexIV.mrc"
Opened cryosparc_P9_J721_map_locres_class3_complexIV.mrc as #10, grid size
600,600,600, pixel 0.84, shown at level 0.00288, step 4, values float32
> color sample #9.1 map #10 palette
> 2.5,#0000ff:3.5,#00aaff:4.5,#00ffa9:5.5,#00ff00:6.5,#aaff00:7.5,#ffaa00:40,#ff0000
> outsideColor #808080
Map values for surface "surface": minimum 0, mean 5.482, maximum 52.32
> hide #!10 models
> volume #9 level 0.2717
> volume #9 step 1
> surface dust #9 size 8.4
> open "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/map_for_refinement/final map for
> figures/cryosparc_P9_J715_NDUFA4.mrc"
Opened cryosparc_P9_J715_NDUFA4.mrc as #11, grid size 600,600,600, pixel 0.84,
shown at level 0.124, step 4, values float32
> volume #11 level 0.2802
> open "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/map_for_refinement/final map for
> figures/cryosparc_P9_J717_map_locres_class4-complexIV.mrc"
Opened cryosparc_P9_J717_map_locres_class4-complexIV.mrc as #12, grid size
600,600,600, pixel 0.84, shown at level 0.00267, step 4, values float32
> hide #!9 models
> color sample #11.1 map #12 palette
> 2.5,#0000ff:3.5,#00aaff:4.5,#00ffa9:5.5,#00ff00:6.5,#aaff00:7.5,#ffaa00:40,#ff0000
> outsideColor #808080
Map values for surface "surface": minimum 0, mean 4.438, maximum 46.25
> hide #!12 models
> volume #11 step 1
> surface dust #11 size 8.4
> volume #11 level 0.3022
> color sample #11.1 map #12 palette
> 2.5,#0000ff:3.5,#00aaff:4.5,#00ffa9:5.5,#00ff00:6.5,#aaff00:7.5,#ffaa00:40,#ff0000
> outsideColor #808080
Map values for surface "surface": minimum 0, mean 4.378, maximum 48.47
Map values for surface "cap near": minimum 3.33, mean 4.773, maximum 40.58
> color sample #11.1 map #12 palette
> 2.5,#0000ff:3.5,#00aaff:4.5,#00ffa9:5.5,#00ff00:6.5,#aaff00:7.5,#ffaa00:40,#ff0000
> outsideColor #808080
Map values for surface "surface": minimum 0, mean 4.378, maximum 48.47
Map values for surface "cap near": minimum 2.916, mean 4.532, maximum 47.53
> color sample #11.1 map #12 palette
> 2.5,#0000ff:3.5,#00aaff:4.5,#00ffa9:5.5,#00ff00:6.5,#aaff00:7.5,#ffaa00:40,#ff0000
> outsideColor #808080
Map values for surface "surface": minimum 0, mean 4.378, maximum 48.47
> save "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/C14_supercomplex_project/HIGD2A-Manuscript/revise/figure
> revise/complex IV local resolution/class 4-1.png" width 1500 height 1609
> supersample 3 transparentBackground true
> show #!9 models
> hide #!11 models
> save "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/C14_supercomplex_project/HIGD2A-Manuscript/revise/figure
> revise/complex IV local resolution/class 3-1.png" width 1500 height 1609
> supersample 3 transparentBackground true
> show #!7 models
> hide #!9 models
> save "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/C14_supercomplex_project/HIGD2A-Manuscript/revise/figure
> revise/complex IV local resolution/class 2-1.png" width 1500 height 1609
> supersample 3 transparentBackground true
> hide #!7 models
> key pos 0.458132,0.200612
> key blue:2.5 #00aaff:3.5 #00ffa9:4.5 lime:5.5 #aaff00:6.5 #ffaa00:7.5
> red:40.0 showTool true
> key blue:2.5 #00aaff:3.5 #00ffa9:4.5 lime:5.5 #aaff00:6.5 #ffaa00:7.5 red:9
> key fontSize 29
> key fontSize 30
> key fontSize 31
> key fontSize 32
> key border false
> key border true
> key border false
> key border true
> key border false
> key border true
> save "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/C14_supercomplex_project/HIGD2A-Manuscript/revise/figure
> revise/complex IV local resolution/scale.png" width 1500 height 1609
> supersample 3 transparentBackground true
> key pos 0.367269,0.0149175 size 0.144905,0.757149
> key pos 0.340129,0.193798
> key pos 0.618502,0.0260402 size 0.149614,0.928228
> key pos 0.438637,0.0304094
> save "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/C14_supercomplex_project/HIGD2A-Manuscript/revise/figure
> revise/complex IV local resolution/scale.png" width 1500 height 1609
> supersample 3 transparentBackground true
> key blue:2.5 #00aaff:3.5 #00ffa9:4.5 lime:5.5 #aaff00:6.5 #ffaa00:7.5
> red:40.0 showTool true
> key blue:2.5 #00aaff:3.5 #00ffa9:4.5 lime:5.5 #aaff00:6.5 #ffaa00:7.5 red:9
> key fontSize 33
> key fontSize 34
> key fontSize 35
> key fontSize 36
> key fontSize 37
> key fontSize 38
> key fontSize 39
> key fontSize 40
> key fontSize 41
> key fontSize 42
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> key fontSize 44
> key fontSize 45
> key fontSize 46
> key fontSize 45
> key bold true
> key bold false
> save "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/C14_supercomplex_project/HIGD2A-Manuscript/revise/figure
> revise/complex IV local resolution/scale.png" width 1500 height 1609
> supersample 3 transparentBackground true
> help help:credits.html
> show #!1 models
> hide #3 models
> select add #5
15153 atoms, 15595 bonds, 7 pseudobonds, 1849 residues, 3 models selected
> select subtract #5
Nothing selected
> show #!5 models
> show #!4 models
> hide #!1 models
> hide atoms
> show cartoons
> hide #!4 models
> select #5/N:77
8 atoms, 7 bonds, 1 residue, 1 model selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
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QFlags(ShiftModifier)
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QFlags(ControlModifier)
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QFlags(ShiftModifier|ControlModifier)
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QFlags(AltModifier)
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QFlags(ShiftModifier|AltModifier)
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QFlags(ControlModifier|AltModifier)
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QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
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QFlags(ShiftModifier|ControlModifier|MetaModifier)
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QFlags(AltModifier|MetaModifier)
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QFlags(ShiftModifier|AltModifier|MetaModifier)
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QFlags(ControlModifier|AltModifier|MetaModifier)
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QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
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QFlags(NoModifier)
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QFlags(ShiftModifier)
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QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
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QFlags(ControlModifier|AltModifier)
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QFlags(ShiftModifier|ControlModifier|AltModifier)
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QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select up
228 atoms, 228 bonds, 31 residues, 1 model selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select up
584 atoms, 594 bonds, 76 residues, 1 model selected
> select clear
> select add #5
15153 atoms, 15595 bonds, 7 pseudobonds, 1849 residues, 3 models selected
> coulombic sel
Using Amber 20 recommended default charges and atom types for standard
residues
copy of full-model-plusHIGD2AtoJ616-localrefinement-
COX3-HIGD2A-1-coot-40_real_space_refined_172.pdb #/G ASN 100 ASH
Nonstandard name for heavy atom copy of full-model-
plusHIGD2AtoJ616-localrefinement-
COX3-HIGD2A-1-coot-40_real_space_refined_172.pdb #/G ASN 100 ND2
> open "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/map_for_refinement/complex
> IV/complex4_real_space_refined_033.pdb"
Chain information for complex4_real_space_refined_033.pdb #13
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
> hide sel atoms
> select subtract #5
Nothing selected
> select add #5
15153 atoms, 15595 bonds, 7 pseudobonds, 1849 residues, 3 models selected
> select subtract #5
Nothing selected
> hide #!5,13 atoms
> show #!5,13 cartoons
Computing secondary structure
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!13 models
> select #5/G
616 atoms, 642 bonds, 75 residues, 1 model selected
> select #5/G:100
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 8 atom styles
> color sel byhetero
> select add #5
15153 atoms, 15595 bonds, 7 pseudobonds, 1849 residues, 3 models selected
> select subtract #5
Nothing selected
> hide #!5 models
> show #!13 models
> select add #13
30480 atoms, 30918 bonds, 19 pseudobonds, 1849 residues, 2 models selected
> coulombic sel
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for complex4_real_space_refined_033.pdb_A SES surface #13.2:
minimum, -12.77, mean 2.74, maximum 20.79
Coulombic values for complex4_real_space_refined_033.pdb_B SES surface #13.3:
minimum, -18.14, mean -0.91, maximum 10.71
Coulombic values for complex4_real_space_refined_033.pdb_C SES surface #13.4:
minimum, -11.47, mean 3.59, maximum 25.36
Coulombic values for complex4_real_space_refined_033.pdb_D SES surface #13.5:
minimum, -9.67, mean 2.04, maximum 14.77
Coulombic values for complex4_real_space_refined_033.pdb_E SES surface #13.6:
minimum, -18.61, mean -1.59, maximum 8.49
Coulombic values for complex4_real_space_refined_033.pdb_F SES surface #13.7:
minimum, -19.98, mean 1.11, maximum 14.07
Coulombic values for complex4_real_space_refined_033.pdb_G SES surface #13.8:
minimum, -10.66, mean 3.59, maximum 16.27
Coulombic values for complex4_real_space_refined_033.pdb_H SES surface #13.9:
minimum, -16.37, mean 1.27, maximum 13.18
Coulombic values for complex4_real_space_refined_033.pdb_I SES surface #13.10:
minimum, -10.99, mean 4.15, maximum 19.59
Coulombic values for complex4_real_space_refined_033.pdb_J SES surface #13.11:
minimum, -15.92, mean 1.05, maximum 18.91
Coulombic values for complex4_real_space_refined_033.pdb_K SES surface #13.12:
minimum, -12.11, mean 1.34, maximum 14.19
Coulombic values for complex4_real_space_refined_033.pdb_L SES surface #13.13:
minimum, -8.54, mean 2.46, maximum 16.09
Coulombic values for complex4_real_space_refined_033.pdb_M SES surface #13.14:
minimum, -10.50, mean 1.46, maximum 17.07
Coulombic values for complex4_real_space_refined_033.pdb_N SES surface #13.15:
minimum, -6.67, mean 3.97, maximum 15.07
To also show corresponding color key, enter the above coulombic command and
add key true
> coulombic sel key true
Coulombic values for complex4_real_space_refined_033.pdb_A SES surface #13.2:
minimum, -12.77, mean 2.74, maximum 20.79
Coulombic values for complex4_real_space_refined_033.pdb_B SES surface #13.3:
minimum, -18.14, mean -0.91, maximum 10.71
Coulombic values for complex4_real_space_refined_033.pdb_C SES surface #13.4:
minimum, -11.47, mean 3.59, maximum 25.36
Coulombic values for complex4_real_space_refined_033.pdb_D SES surface #13.5:
minimum, -9.67, mean 2.04, maximum 14.77
Coulombic values for complex4_real_space_refined_033.pdb_E SES surface #13.6:
minimum, -18.61, mean -1.59, maximum 8.49
Coulombic values for complex4_real_space_refined_033.pdb_F SES surface #13.7:
minimum, -19.98, mean 1.11, maximum 14.07
Coulombic values for complex4_real_space_refined_033.pdb_G SES surface #13.8:
minimum, -10.66, mean 3.59, maximum 16.27
Coulombic values for complex4_real_space_refined_033.pdb_H SES surface #13.9:
minimum, -16.37, mean 1.27, maximum 13.18
Coulombic values for complex4_real_space_refined_033.pdb_I SES surface #13.10:
minimum, -10.99, mean 4.15, maximum 19.59
Coulombic values for complex4_real_space_refined_033.pdb_J SES surface #13.11:
minimum, -15.92, mean 1.05, maximum 18.91
Coulombic values for complex4_real_space_refined_033.pdb_K SES surface #13.12:
minimum, -12.11, mean 1.34, maximum 14.19
Coulombic values for complex4_real_space_refined_033.pdb_L SES surface #13.13:
minimum, -8.54, mean 2.46, maximum 16.09
Coulombic values for complex4_real_space_refined_033.pdb_M SES surface #13.14:
minimum, -10.50, mean 1.46, maximum 17.07
Coulombic values for complex4_real_space_refined_033.pdb_N SES surface #13.15:
minimum, -6.67, mean 3.97, maximum 15.07
> key red-white-blue :-10 :0 :10 showTool true
> ui mousemode right "color key"
> key pos 0.808846,0.411001 size 0.0955005,0.273628
> key pos 0.855741,0.372461 size 0.0335848,0.229675
> ui tool show "Surface Color"
> color electrostatic #13.15 map #1 palette -10,#ff0000:0,#ffffff:10,#0000ff
> outsideColor #808080
Map values for surface "complex4_real_space_refined_033.pdb_N SES surface":
minimum -0.4655, mean 0.06175, maximum 0.8388
> color electrostatic #13.4 map #1 palette -10,#ff0000:0,#ffffff:10,#0000ff
> outsideColor #808080
Map values for surface "complex4_real_space_refined_033.pdb_C SES surface":
minimum -0.7118, mean -0.01841, maximum 1.256
> color electrostatic #13.15 map #1 palette -10,#ff0000:0,#ffffff:10,#0000ff
> outsideColor #808080
Map values for surface "complex4_real_space_refined_033.pdb_N SES surface":
minimum -0.4655, mean 0.06175, maximum 0.8388
> select #13/N:65@OH
1 atom, 1 residue, 1 model selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
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QFlags(ShiftModifier)
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QFlags(ControlModifier)
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QFlags(ShiftModifier|ControlModifier)
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QFlags(AltModifier)
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QFlags(ShiftModifier|AltModifier)
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QFlags(ControlModifier|AltModifier)
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QFlags(ShiftModifier|ControlModifier|AltModifier)
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QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
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QFlags(AltModifier|MetaModifier)
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QFlags(ShiftModifier|AltModifier|MetaModifier)
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QFlags(ControlModifier|AltModifier|MetaModifier)
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QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
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QFlags(NoModifier)
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QFlags(ShiftModifier)
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QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select up
21 atoms, 21 bonds, 1 residue, 2 models selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select up
241 atoms, 243 bonds, 17 residues, 2 models selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select up
1198 atoms, 1208 bonds, 76 residues, 2 models selected
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> coulombic sel key true
Coulombic values for complex4_real_space_refined_033.pdb_N SES surface #13.15:
minimum, -6.67, mean 3.97, maximum 15.07
> key red-white-blue :-10 :0 :10 showTool true
> key red-white-blue :- :0 :10
> key red-white-blue :-6 :0 :10
> key red-white-blue :-6. :0 :10
> key red-white-blue :-6.6 :0 :10
> key red-white-blue :-6.67 :0 :10
> key red-white-blue :-6.67 :0 :1
> key red-white-blue :-6.67 :0 :15
> key red-white-blue :-6.67 :0 :15.
> key red-white-blue :-6.67 :0 :15.0
> key red-white-blue :-6.67 :0 :15.07
> key pos 0.818821,0.394542 size 0.0552547,0.177333
> key pos 0.770525,0.0598471 size 0.0943374,0.599169
> key pos 0.769154,0.26171 size 0.0832921,0.353428
> key pos 0.769154,0.26171
> show #3 models
> key pos 0.72732,0.185449
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> coulombic sel key true:-10 :0 :10
Invalid "key" argument: Expected true or false (or 1 or 0)
> select add #13
30480 atoms, 30918 bonds, 19 pseudobonds, 1849 residues, 5 models selected
> select subtract #13
14 models selected
> select add #13
30480 atoms, 30918 bonds, 19 pseudobonds, 1849 residues, 4 models selected
> hide sel cartoons
> hide sel surfaces
> select #13/N
1198 atoms, 1208 bonds, 76 residues, 1 model selected
> show sel surfaces
> select clear
> select #13/C
4842 atoms, 4925 bonds, 265 residues, 1 model selected
> show sel surfaces
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> coulombic sel key true
Coulombic values for complex4_real_space_refined_033.pdb_C SES surface #13.4:
minimum, -11.47, mean 3.59, maximum 25.36
> key red-white-blue :-10 :0 :10 showTool true
> hide #13.15 models
> show #13.15 models
> hide #13.15 models
> hide #13.4 models
> show #13.4 models
> key pos 0.684634,0.255433
> key pos 0.734996,0.452144 size 0.0937538,0.395004
> key pos 0.729645,0.345309
> show #13.15 models
> select subtract #13.4
640 atoms, 636 bonds, 4 residues, 2 models selected
> hide #13.4 models
> hide #!13 models
> select add #13
30480 atoms, 30918 bonds, 19 pseudobonds, 1849 residues, 2 models selected
> select subtract #13
14 models selected
> show #!5 models
> key pos 0.822081,0.338943
> key pos 0.751859,0.341901
> key pos 0.730059,0.0718504 size 0.0939669,0.131663
> key pos 0.412245,0.0540362 size 0.470419,0.0712816
> key pos 0.331788,0.0845396
> key fontSize 44
> key fontSize 43
> key fontSize 42
> key fontSize 41
> key fontSize 40
> key fontSize 39
> key fontSize 38
> key fontSize 37
> key fontSize 36
> key fontSize 35
> key fontSize 34
> key fontSize 33
> key fontSize 32
> key fontSize 31
> key fontSize 30
> key fontSize 29
> key fontSize 28
> key fontSize 27
> key fontSize 26
> key pos 0.224325,0.0622672
> select #5/N
584 atoms, 594 bonds, 76 residues, 1 model selected
> coulombic sel
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for full-model-plusHIGD2AtoJ616-localrefinement-
COX3-HIGD2A-1-coot-40_real_space_refined_172.pdb_N SES surface #5.3: minimum,
-7.31, mean 3.08, maximum 12.72
To also show corresponding color key, enter the above coulombic command and
add key true
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> coulombic sel key true
Coulombic values for full-model-plusHIGD2AtoJ616-localrefinement-
COX3-HIGD2A-1-coot-40_real_space_refined_172.pdb_N SES surface #5.3: minimum,
-7.31, mean 3.08, maximum 12.72
> key red-white-blue :-10 :0 :10 showTool true
> select #5/C
2380 atoms, 2463 bonds, 265 residues, 1 model selected
> coulombic sel
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for full-model-plusHIGD2AtoJ616-localrefinement-
COX3-HIGD2A-1-coot-40_real_space_refined_172.pdb_C SES surface #5.4: minimum,
-12.81, mean -1.10, maximum 12.97
To also show corresponding color key, enter the above coulombic command and
add key true
> coulombic sel
Coulombic values for full-model-plusHIGD2AtoJ616-localrefinement-
COX3-HIGD2A-1-coot-40_real_space_refined_172.pdb_C SES surface #5.4: minimum,
-12.81, mean -1.10, maximum 12.97
To also show corresponding color key, enter the above coulombic command and
add key true
> hide sel cartoons
> select add #5
15153 atoms, 15595 bonds, 7 pseudobonds, 1849 residues, 6 models selected
> hide sel cartoons
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> coulombic sel key true
Using Amber 20 recommended default charges and atom types for standard
residues
copy of full-model-plusHIGD2AtoJ616-localrefinement-
COX3-HIGD2A-1-coot-40_real_space_refined_172.pdb #/G ASN 100 ASH
Nonstandard name for heavy atom copy of full-model-
plusHIGD2AtoJ616-localrefinement-
COX3-HIGD2A-1-coot-40_real_space_refined_172.pdb #/G ASN 100 ND2
> select subtract #5
2 models selected
> select #5/N
584 atoms, 594 bonds, 76 residues, 1 model selected
> hide sel surfaces
> select add #5
15153 atoms, 15595 bonds, 7 pseudobonds, 1849 residues, 6 models selected
> select subtract #5
2 models selected
> show #!5 cartoons
> hide #!5 cartoons
> select #5/G
616 atoms, 642 bonds, 75 residues, 1 model selected
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> coulombic sel key true
Using Amber 20 recommended default charges and atom types for standard
residues
copy of full-model-plusHIGD2AtoJ616-localrefinement-
COX3-HIGD2A-1-coot-40_real_space_refined_172.pdb #/G ASN 100 ASH
Nonstandard name for heavy atom copy of full-model-
plusHIGD2AtoJ616-localrefinement-
COX3-HIGD2A-1-coot-40_real_space_refined_172.pdb #/G ASN 100 ND2
> select #13/G
1216 atoms, 1242 bonds, 75 residues, 1 model selected
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> coulombic sel key true
Coulombic values for complex4_real_space_refined_033.pdb_G SES surface #13.8:
minimum, -10.66, mean 3.59, maximum 16.27
> key red-white-blue :-10 :0 :10 showTool true
> show #!13 models
> hide #!13 models
> show #!13 models
> select add #13
30480 atoms, 30918 bonds, 19 pseudobonds, 1849 residues, 3 models selected
> select subtract #13
14 models selected
> hide #!13 models
> show #!13 models
> select #13/N:68@HE2
1 atom, 1 residue, 1 model selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select up
18 atoms, 18 bonds, 1 residue, 2 models selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select up
122 atoms, 123 bonds, 8 residues, 2 models selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select up
1198 atoms, 1208 bonds, 76 residues, 2 models selected
> hide sel surfaces
> select #5/N
584 atoms, 594 bonds, 76 residues, 1 model selected
> show sel surfaces
> hide sel surfaces
> show sel surfaces
> hide sel surfaces
> show sel surfaces
> save "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/map_for_refinement/complex IV/HIGD2A-alone.pdb"
> models #5 selectedOnly true relModel #5.4
> open "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/C14_supercomplex_project/HIGD2A-Manuscript/validation
> report/HIGD2A-bound-complexIV-model.pdb"
HIGD2A-bound-complexIV-model.pdb title:
Cryo-em structure of HIGD2A bound complex IV [more info...]
Chain information for HIGD2A-bound-complexIV-model.pdb #14
---
Chain | Description | UniProt
A | cytochrome C oxidase polypeptide I | COX1_HUMAN 1-513
B | cytochrome C oxidase polypeptide II | COX2_HUMAN 1-227
C | cytochrome C oxidase polypeptide III | COX3_HUMAN 1-261
D | cytochrome C oxidase subunit 4 isoform 1, mitochondrial | COX41_HUMAN 1-169
E | cytochrome C oxidase polypeptide VA | COX5A_HUMAN 1-150
F | cytochrome C oxidase polypeptide VB | COX5B_HUMAN 1-129
G | cytochrome C oxidase subunit 6A1, mitochondrial | CX6A1_HUMAN 1-109
H | cytochrome C oxidase subunit 6B1 | CX6B1_HUMAN 1-86
I | cytochrome C oxidase polypeptide VIC | COX6C_HUMAN 1-75
J | cytochrome C oxidase subunit 7A2, mitochondrial | CX7A2_HUMAN 1-83
K | cytochrome C oxidase polypeptide VIIB | COX7B_HUMAN 1-80
L | cytochrome C oxidase polypeptide VIIC | COX7C_HUMAN 1-63
M | cytochrome C oxidase subunit 8A, mitochondrial | COX8A_HUMAN 1-69
N | HIG1 domain family member 2A, mitochondrial | HIG2A_HUMAN 1-106
Non-standard residues in HIGD2A-bound-complexIV-model.pdb #14
---
CDL — cardiolipin (diphosphatidyl glycerol; bis-(1,2-diacyl-Sn-
glycero-3-phospho)-1',3'-Sn-glycerol)
CU — copper (II) ion
HEA — heme-A
MG — magnesium ion
PEE — 1,2-dioleoyl-Sn-glycero-3-phosphoethanolamine (DOPE)
PGV —
(1R)-2-{[{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl
(11E)-octadec-11-enoate (phosphatidylglycerol; 2-vaccenoyl-1-palmitoyl-Sn-
glycerol-3-phosphoglycerol)
ZN — zinc ion
> hide sel atoms
> select add #5
15153 atoms, 15595 bonds, 7 pseudobonds, 1849 residues, 6 models selected
> select subtract #5
2 models selected
> select add #14
30444 atoms, 30892 bonds, 23 pseudobonds, 1849 residues, 2 models selected
> hide sel atoms
> show sel cartoons
> select clear
> hide #!13 models
> hide #!5 models
> hide #3 models
> show #3 models
> select add #14
30444 atoms, 30892 bonds, 23 pseudobonds, 1849 residues, 2 models selected
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> coulombic sel key true
The following heavy (non-hydrogen) atoms are missing, which may result in
inaccurate electrostatics:
HIGD2A-bound-complexIV-model.pdb #14/L THR 63 OXT
HIGD2A-bound-complexIV-model.pdb #14/I VAL 5 CG1
HIGD2A-bound-complexIV-model.pdb #14/I VAL 5 CG2
HIGD2A-bound-complexIV-model.pdb #14/N PRO 106 OXT
HIGD2A-bound-complexIV-model.pdb #14/A SER 513 OXT
Using Amber 20 recommended default charges and atom types for standard
residues
Assigning partial charges to residue FME (net charge +0) with am1-bcc method
Running ANTECHAMBER command:
/Applications/ChimeraX-1.10.app/Contents/bin/amber20/bin/antechamber -ek
qm_theory='AM1', -i
/var/folders/2r/xvp1kqcd1pg8j_dsfm0m5f980000gp/T/tmpa_v72cr3/ante.in.mol2 -fi
mol2 -o
/var/folders/2r/xvp1kqcd1pg8j_dsfm0m5f980000gp/T/tmpa_v72cr3/ante.out.mol2 -fo
mol2 -c bcc -nc 0 -j 5 -s 2 -dr n
(FME) ``
(FME) `Welcome to antechamber 20.0: molecular input file processor.`
(FME) ``
(FME) `Info: Finished reading file
(/var/folders/2r/xvp1kqcd1pg8j_dsfm0m5f980000gp/T/tmpa_v72cr3/ante.in.mol2);
atoms read (26), bonds read (25).`
(FME) `Info: Determining atomic numbers from atomic symbols which are case
sensitive.`
(FME) `Running:
/Applications/ChimeraX-1.10.app/Contents/bin/amber20/bin/bondtype -j part -i
ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac`
(FME) ``
(FME) ``
(FME) `Running:
/Applications/ChimeraX-1.10.app/Contents/bin/amber20/bin/atomtype -i
ANTECHAMBER_AC.AC0 -o ANTECHAMBER_AC.AC -p gaff`
(FME) `Info: Total number of electrons: 102; net charge: 0`
(FME) ``
(FME) `Running: /Applications/ChimeraX-1.10.app/Contents/bin/amber20/bin/sqm
-O -i sqm.in -o sqm.out`
(FME) ``
(FME) `Running:
/Applications/ChimeraX-1.10.app/Contents/bin/amber20/bin/am1bcc -i
ANTECHAMBER_AM1BCC_PRE.AC -o ANTECHAMBER_AM1BCC.AC -f ac -p
/Applications/ChimeraX-1.10.app/Contents/bin/amber20/dat/antechamber/BCCPARM.DAT
-s 2 -j 1`
(FME) ``
(FME) `Running:
/Applications/ChimeraX-1.10.app/Contents/bin/amber20/bin/atomtype -f ac -p bcc
-o ANTECHAMBER_AM1BCC.AC -i ANTECHAMBER_AM1BCC_PRE.AC`
(FME) ``
Charges for residue FME determined
Coulombic values for HIGD2A-bound-complexIV-model.pdb_A SES surface #14.2:
minimum, -13.45, mean 1.43, maximum 16.64
Coulombic values for HIGD2A-bound-complexIV-model.pdb_B SES surface #14.3:
minimum, -18.04, mean -1.18, maximum 10.49
Coulombic values for HIGD2A-bound-complexIV-model.pdb_C SES surface #14.4:
minimum, -11.76, mean 2.73, maximum 20.97
Coulombic values for HIGD2A-bound-complexIV-model.pdb_D SES surface #14.5:
minimum, -9.85, mean 1.86, maximum 14.65
Coulombic values for HIGD2A-bound-complexIV-model.pdb_E SES surface #14.6:
minimum, -19.46, mean -1.91, maximum 8.57
Coulombic values for HIGD2A-bound-complexIV-model.pdb_F SES surface #14.7:
minimum, -20.78, mean 0.91, maximum 15.11
Coulombic values for HIGD2A-bound-complexIV-model.pdb_G SES surface #14.8:
minimum, -11.39, mean 3.31, maximum 15.51
Coulombic values for HIGD2A-bound-complexIV-model.pdb_H SES surface #14.9:
minimum, -16.07, mean 0.89, maximum 12.85
Coulombic values for HIGD2A-bound-complexIV-model.pdb_I SES surface #14.10:
minimum, -11.45, mean 3.94, maximum 18.55
Coulombic values for HIGD2A-bound-complexIV-model.pdb_J SES surface #14.11:
minimum, -16.02, mean 0.59, maximum 18.43
Coulombic values for HIGD2A-bound-complexIV-model.pdb_K SES surface #14.12:
minimum, -12.79, mean 0.97, maximum 11.01
Coulombic values for HIGD2A-bound-complexIV-model.pdb_L SES surface #14.13:
minimum, -9.88, mean 1.78, maximum 15.40
Coulombic values for HIGD2A-bound-complexIV-model.pdb_M SES surface #14.14:
minimum, -10.50, mean 1.00, maximum 9.32
Coulombic values for HIGD2A-bound-complexIV-model.pdb_N SES surface #14.15:
minimum, -9.47, mean 3.44, maximum 14.76
> key red-white-blue :-10 :0 :10 showTool true
> key red-white-blue :-1 :0 :10
> key red-white-blue :- :0 :10
> key red-white-blue : :0 :10
> key red-white-blue : : :10
> key red-white-blue : : :1
> key red-white-blue : : :
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> coulombic sel key true
Coulombic values for HIGD2A-bound-complexIV-model.pdb_A SES surface #14.2:
minimum, -13.45, mean 1.43, maximum 16.64
Coulombic values for HIGD2A-bound-complexIV-model.pdb_B SES surface #14.3:
minimum, -18.04, mean -1.18, maximum 10.49
Coulombic values for HIGD2A-bound-complexIV-model.pdb_C SES surface #14.4:
minimum, -11.76, mean 2.73, maximum 20.97
Coulombic values for HIGD2A-bound-complexIV-model.pdb_D SES surface #14.5:
minimum, -9.85, mean 1.86, maximum 14.65
Coulombic values for HIGD2A-bound-complexIV-model.pdb_E SES surface #14.6:
minimum, -19.46, mean -1.91, maximum 8.57
Coulombic values for HIGD2A-bound-complexIV-model.pdb_F SES surface #14.7:
minimum, -20.78, mean 0.91, maximum 15.11
Coulombic values for HIGD2A-bound-complexIV-model.pdb_G SES surface #14.8:
minimum, -11.39, mean 3.31, maximum 15.51
Coulombic values for HIGD2A-bound-complexIV-model.pdb_H SES surface #14.9:
minimum, -16.07, mean 0.89, maximum 12.85
Coulombic values for HIGD2A-bound-complexIV-model.pdb_I SES surface #14.10:
minimum, -11.45, mean 3.94, maximum 18.55
Coulombic values for HIGD2A-bound-complexIV-model.pdb_J SES surface #14.11:
minimum, -16.02, mean 0.59, maximum 18.43
Coulombic values for HIGD2A-bound-complexIV-model.pdb_K SES surface #14.12:
minimum, -12.79, mean 0.97, maximum 11.01
Coulombic values for HIGD2A-bound-complexIV-model.pdb_L SES surface #14.13:
minimum, -9.88, mean 1.78, maximum 15.40
Coulombic values for HIGD2A-bound-complexIV-model.pdb_M SES surface #14.14:
minimum, -10.50, mean 1.00, maximum 9.32
Coulombic values for HIGD2A-bound-complexIV-model.pdb_N SES surface #14.15:
minimum, -9.47, mean 3.44, maximum 14.76
> key red-white-blue :-10 :0 :10 showTool true
> select clear
> select add #14
30444 atoms, 30892 bonds, 23 pseudobonds, 1849 residues, 2 models selected
> hide sel surfaces
> hide sel cartoons
> select clear
> select #14/C
4456 atoms, 4541 bonds, 263 residues, 1 model selected
> show sel surfaces
> select #14/G
1342 atoms, 1367 bonds, 76 residues, 1 model selected
> show sel surfaces
> select #14/N
1196 atoms, 1206 bonds, 76 residues, 1 model selected
> show sel surfaces
> select clear
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select #14/N
1196 atoms, 1206 bonds, 76 residues, 1 model selected
> hide sel surfaces
> show sel surfaces
> key red-white-blue : :0 :10
> key red-white-blue : : :10
> key red-white-blue : : :
> key pos 0.25445,0.0285041
> key red-white-blue :- : :
> key red-white-blue :- : :+
> key pos 0.255556,0.0475018
> key pos 0.257107,0.0472099
> key red-white-blue :- :0 :+
> key pos 0.259099,0.051335
> save "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/C14_supercomplex_project/HIGD2A-Manuscript/revise/figure
> revise/electrostatic potential-3.png" width 1500 height 1690 supersample 3
> transparentBackground true
> select add #14
30444 atoms, 30892 bonds, 23 pseudobonds, 1849 residues, 3 models selected
> select subtract #14
14 models selected
> select #14/N
1196 atoms, 1206 bonds, 76 residues, 1 model selected
> select add #14
30444 atoms, 30892 bonds, 23 pseudobonds, 1849 residues, 3 models selected
> select subtract #14
14 models selected
> save "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/C14_supercomplex_project/HIGD2A-Manuscript/revise/figure
> revise/electrostatic potential-4.png" width 1500 height 1690 supersample 3
> transparentBackground true
> select #14/N
1196 atoms, 1206 bonds, 76 residues, 1 model selected
> hide sel surfaces
> save "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/C14_supercomplex_project/HIGD2A-Manuscript/revise/figure
> revise/electrostatic potential-5.png" width 1500 height 1690 supersample 3
> transparentBackground true
> select add #14
30444 atoms, 30892 bonds, 23 pseudobonds, 1849 residues, 3 models selected
> hide sel surfaces
> select #14/N
1196 atoms, 1206 bonds, 76 residues, 1 model selected
> show sel surfaces
> select add #14
30444 atoms, 30892 bonds, 23 pseudobonds, 1849 residues, 3 models selected
> select subtract #14
14 models selected
> select #14/C
4456 atoms, 4541 bonds, 263 residues, 1 model selected
> show sel surfaces
> select #14/G
1342 atoms, 1367 bonds, 76 residues, 1 model selected
> show sel surfaces
> select clear
> key pos 0.253122,0.0472098
> select clear
> save "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/C14_supercomplex_project/HIGD2A-Manuscript/revise/figure
> revise/electrostatic potential-3.png" width 1500 height 1387 supersample 3
> transparentBackground true
> select #14/N
1196 atoms, 1206 bonds, 76 residues, 1 model selected
> hide sel surfaces
> save "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/C14_supercomplex_project/HIGD2A-Manuscript/revise/figure
> revise/electrostatic potential-4.png" width 1500 height 1387 supersample 3
> transparentBackground true
> select #14/C
4456 atoms, 4541 bonds, 263 residues, 1 model selected
> hide sel surfaces
> select #14/G
1342 atoms, 1367 bonds, 76 residues, 1 model selected
> hide sel surfaces
> select #14/N
1196 atoms, 1206 bonds, 76 residues, 1 model selected
> show sel surfaces
> select clear
> graphics silhouettes true
> save "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/C14_supercomplex_project/HIGD2A-Manuscript/revise/figure
> revise/electrostatic potential-5.png" width 1500 height 1387 supersample 3
> transparentBackground true
> select #14/C
4456 atoms, 4541 bonds, 263 residues, 1 model selected
> show sel surfaces
> select #14/G
1342 atoms, 1367 bonds, 76 residues, 1 model selected
> show sel surfaces
> select clear
> select add #14
30444 atoms, 30892 bonds, 23 pseudobonds, 1849 residues, 2 models selected
> show sel surfaces
> hide sel surfaces
> select #14/C
4456 atoms, 4541 bonds, 263 residues, 1 model selected
> show sel surfaces
> select #14/G
1342 atoms, 1367 bonds, 76 residues, 1 model selected
> show sel surfaces
> select #14/H
1335 atoms, 1357 bonds, 83 residues, 1 model selected
> show sel surfaces
> select #14/N
1196 atoms, 1206 bonds, 76 residues, 1 model selected
> show sel surfaces
> hide sel surfaces
> show sel surfaces
> graphics silhouettes false
> hide sel surfaces
> show sel surfaces
> hide sel surfaces
> show sel surfaces
> hide sel surfaces
> show sel surfaces
> hide sel surfaces
> show sel surfaces
> hide sel surfaces
> show sel surfaces
> hide sel surfaces
> show sel surfaces
> save "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/C14_supercomplex_project/HIGD2A-Manuscript/revise/figure
> revise/electrostatic potential-3.png" width 1500 height 1387 supersample 3
> transparentBackground true
> hide sel surfaces
> save "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/C14_supercomplex_project/HIGD2A-Manuscript/revise/figure
> revise/electrostatic potential-4.png" width 1500 height 1387 supersample 3
> transparentBackground true
> show sel surfaces
> select add #14
30444 atoms, 30892 bonds, 23 pseudobonds, 1849 residues, 3 models selected
> hide sel surfaces
> show sel cartoons
> select subtract #14
14 models selected
> hide #3 models
> show #!4 models
> hide #!14 models
> select #4/B:64
16 atoms, 15 bonds, 1 residue, 1 model selected
> select #4/B:60
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #4/B:66
14 atoms, 13 bonds, 1 residue, 1 model selected
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> setattr #4/B:60-66 res ss_type 1
Assigning ss_type attribute to 7 items
> select clear
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> setattr #4/B:60-66 res ss_type 1
Assigning ss_type attribute to 7 items
> select add #4
30740 atoms, 31201 bonds, 26 pseudobonds, 1862 residues, 2 models selected
> hide sel cartoons
> select subtract #4
Nothing selected
> show #!14 models
> select add #14
30444 atoms, 30892 bonds, 23 pseudobonds, 1849 residues, 2 models selected
> hide sel cartoons
> select subtract #14
14 models selected
> select #4/B
3540 atoms, 3584 bonds, 4 pseudobonds, 223 residues, 2 models selected
> show sel cartoons
> select clear
> select #14/B
3544 atoms, 3587 bonds, 5 pseudobonds, 224 residues, 2 models selected
> show sel cartoons
> select clear
> hide #!14 models
> select #4/B:78
19 atoms, 18 bonds, 1 residue, 1 model selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select up
400 atoms, 404 bonds, 23 residues, 1 model selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select up
3539 atoms, 3584 bonds, 222 residues, 1 model selected
> color bfactor sel
3539 atoms, 222 residues, atom bfactor range 59.3 to 159
> select clear
> color bfactor sel key true
No atoms specified
> select #4/B:60
15 atoms, 14 bonds, 1 residue, 1 model selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select up
64 atoms, 63 bonds, 4 residues, 1 model selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select up
3539 atoms, 3584 bonds, 222 residues, 1 model selected
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> color bfactor sel key true
> key blue-white-red :59 :109 :159 showTool true
3539 atoms, 222 residues, atom bfactor range 59.3 to 159
> key pos 0.421298,0.0370186 size 0.303351,0.00721483
> key pos 0.73925,0.153964 size 0.0948069,0.221995
> key pos 0.76157,0.226266 size 0.0770872,0.312895
> key pos 0.814597,0.327862 size 0.0549811,0.209886
> key pos 0.750063,0.46924 size 0,0
> show #3 models
> key pos 0.757052,0.0680699 size 0.0918422,0.465711
> select clear
> select #4/B:62
15 atoms, 14 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 15 atom styles
> hide H
> select clear
> key pos 0.599856,0.0508048
> select #4/A
8644 atoms, 8791 bonds, 13 pseudobonds, 520 residues, 2 models selected
> show sel cartoons
> hide sel cartoons
> save "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/C14_supercomplex_project/HIGD2A-Manuscript/revise/figure
> revise/B factor cox 2 NDUFA4 bound.png" width 1500 height 1387 supersample 3
> transparentBackground true
> select add #4
30740 atoms, 31201 bonds, 26 pseudobonds, 1862 residues, 2 models selected
> select subtract #4
Nothing selected
> hide #!4 models
> show #!14 models
> select #14/B:63
14 atoms, 13 bonds, 1 residue, 1 model selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select up
429 atoms, 433 bonds, 25 residues, 2 models selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select up
3542 atoms, 3587 bonds, 222 residues, 2 models selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> color bfactor sel key true
> key blue-white-red :54 :108 :162 showTool true
3542 atoms, 222 residues, 1 surfaces, atom bfactor range 53.5 to 162
> select #14/B:62
15 atoms, 14 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 15 atom styles
> hide H
> select clear
> save "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/C14_supercomplex_project/HIGD2A-Manuscript/revise/figure
> revise/B factor cox 2 HIGD2A bound.png" width 1500 height 1387 supersample 3
> transparentBackground true
> hide #!14 models
> show #!4 models
> hide #3 models
> show #!14 models
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> setattr #4/B:215-220 res ss_type 1
Assigning ss_type attribute to 6 items
> hide #!14 models
> show #!14 models
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> setattr #4/B:116-120 res ss_type 2
Assigning ss_type attribute to 5 items
> hide #!14 models
> show #!14 models
> hide #!14 models
> show #!14 models
> hide #!14 models
> show #!14 models
> hide #!14 models
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> setattr #4/B:60-66 res ss_type 1
Assigning ss_type attribute to 7 items
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select #4/B:60
15 atoms, 14 bonds, 1 residue, 1 model selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select up
64 atoms, 63 bonds, 4 residues, 1 model selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select up
3539 atoms, 3584 bonds, 222 residues, 1 model selected
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> color bfactor sel key true
> key blue-white-red :59 :109 :159 showTool true
3539 atoms, 222 residues, atom bfactor range 59.3 to 159
> show #3 models
> select clear
> save "/Users/minh.duc.nguyen/Library/CloudStorage/OneDrive-
> KarolinskaInstitutet/KI/C14_supercomplex_project/HIGD2A-Manuscript/revise/figure
> revise/B factor cox 2 NDUFA4 bound.png" width 1500 height 1387 supersample 3
> transparentBackground true
> hide #3 models
> select #4/B:62
15 atoms, 14 bonds, 1 residue, 1 model selected
> hide #!4 models
> select add #4
30740 atoms, 31201 bonds, 26 pseudobonds, 1862 residues, 2 models selected
> select subtract #4
Nothing selected
> show #!1 models
> ui tool show "Surface Color"
> color sample #1.1 map #2 palette
> 2.5,#0000ff:3.5,#00aaff:4.5,#00ffa9:5.5,#00ff00:6.5,#aaff00:7.5,#ffaa00:30,#ff0000
> outsideColor #808080
Map values for surface "surface": minimum 0, mean 3.865, maximum 43.55
Map values for surface "cap far": minimum 2.706, mean 3.656, maximum 7.562
> color sample #1.1 map #2 palette
> 2.5,#0000ff:3.5,#00aaff:4.5,#00ffa9:5.5,#00ff00:6.5,#aaff00:7.5,#ffaa00:30,#ff0000
> outsideColor #808080
Map values for surface "surface": minimum 0, mean 3.865, maximum 43.55
Map values for surface "cap far": minimum 2.706, mean 3.656, maximum 7.562
> show #!11 models
> hide #!1 models
> volume #11 level 0.3441
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!11 models
> show #!1 models
> volume #1 level 0.3278
> show #!14 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> show #!4,14 cartoons
> select add #4
30740 atoms, 31201 bonds, 26 pseudobonds, 1862 residues, 2 models selected
> show sel cartoons
> select subtract #4
Nothing selected
> select add #14
30444 atoms, 30892 bonds, 23 pseudobonds, 1849 residues, 2 models selected
> show sel cartoons
> select subtract #14
14 models selected
> select ::name="PGV"
432 atoms, 428 bonds, 4 residues, 4 models selected
> show sel & #!4,14 atoms
> select add #13
30785 atoms, 31220 bonds, 19 pseudobonds, 1852 residues, 5 models selected
> select subtract #13
305 atoms, 302 bonds, 3 residues, 17 models selected
> hide #!1 models
> show #!1 models
> hide sel & #!4,14 atoms
> select add #4
30918 atoms, 31377 bonds, 26 pseudobonds, 1864 residues, 4 models selected
> select subtract #4
178 atoms, 176 bonds, 2 residues, 2 models selected
> select add #5
15280 atoms, 15721 bonds, 7 pseudobonds, 1850 residues, 4 models selected
> select subtract #5
127 atoms, 126 bonds, 1 residue, 3 models selected
> hide #!4 models
> hide #!1 models
> show #!11 models
> select add #14
30444 atoms, 30892 bonds, 23 pseudobonds, 1849 residues, 2 models selected
> select subtract #14
14 models selected
> hide #!14 models
> show #!4 models
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> volume #11 level 0.3
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> volume #11 level 0.28
> select #4/B:62@CD
1 atom, 1 residue, 1 model selected
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(NoModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x1e' and Carbon '\x0' for virtual key 126 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select up
15 atoms, 14 bonds, 1 residue, 1 model selected
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> volume zone #11 nearAtoms sel range 5 newMap true
Opened cryosparc_P9_J715_NDUFA4.mrc zone as #15, grid size 600,600,600, pixel
0.84, shown at step 1, values float32
> volume #15 level 0.2653
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\xd' and Carbon '\x0' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> volume zone #11 nearAtoms sel range 3.5 newMap true
Opened cryosparc_P9_J715_NDUFA4.mrc zone as #16, grid size 600,600,600, pixel
0.84, shown at step 1, values float32
> hide #!15 models
> hide #!16 models
> show #!16 models
> hide #!16 models
> show #!14 models
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.10 (2025-06-26)
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How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-7.0.3
OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,1
Processor Name: 8-Core Intel Core i9
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 256 KB
L3 Cache: 16 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 2075.120.2.0.0 (iBridge: 22.16.15072.0.0,0)
OS Loader Version: 583~1350
Software:
System Software Overview:
System Version: macOS 15.5 (24F74)
Kernel Version: Darwin 24.5.0
Time since boot: 5 days, 11 hours, 9 minutes
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0002
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
AMD Radeon Pro 5500M:
Chipset Model: AMD Radeon Pro 5500M
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 4 GB
Vendor: AMD (0x1002)
Device ID: 0x7340
Revision ID: 0x0040
ROM Revision: 113-D3220E-190
VBIOS Version: 113-D32206U1-020
Option ROM Version: 113-D32206U1-020
EFI Driver Version: 01.A1.190
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 3072 x 1920 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
DELL P2319H:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: B7HMY43
Mirror: Off
Online: Yes
Rotation: Supported
Connection Type: DVI or HDMI
Adapter Firmware Version: 2.4a
Installed Packages:
alabaster: 1.0.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.4.0
babel: 2.17.0
beautifulsoup4: 4.13.3
blockdiag: 3.0.0
blosc2: 3.5.0
build: 1.2.2.post1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.2
ChimeraX-AddCharge: 1.5.19
ChimeraX-AddH: 2.2.7
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.20.2
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Aniso: 1.1.4
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.60.7
ChimeraX-AtomicLibrary: 14.1.18
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.5.1
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.10
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.1
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.6.2
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.10.1
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.19
ChimeraX-ModelPanel: 1.5.1
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14.1
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.10
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.3
ChimeraX-ProfileGrids: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.7
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.1
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.45.2
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.2
coverage: 7.9.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.12
debugpy: 1.8.14
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.0
filelock: 3.18.0
fonttools: 4.58.4
funcparserlib: 2.0.0a0
glfw: 2.9.0
grako: 3.16.5
h5py: 3.14.0
html2text: 2024.2.26
idna: 3.10
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.1.0
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.7
jedi: 0.19.1
Jinja2: 3.1.6
jupyter_client: 8.6.3
jupyter_core: 5.8.1
jupyterlab_widgets: 3.0.15
kiwisolver: 1.4.8
line_profiler: 4.2.0
lxml: 5.3.1
lz4: 4.4.4
MarkupSafe: 3.0.2
matplotlib: 3.10.1
matplotlib-inline: 0.1.7
msgpack: 1.1.0
ndindex: 1.10.0
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.11.0
numpy: 1.26.4
OpenMM: 8.2.0
openvr: 1.26.701
packaging: 24.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.4.0
pip: 25.0.1
pkginfo: 1.11.1
platformdirs: 4.3.8
pluggy: 1.6.0
prompt_toolkit: 3.0.51
psutil: 7.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.32
Pygments: 2.18.0
pynmrstar: 3.3.5
pynrrd: 1.0.0
PyOpenGL: 3.1.9
PyOpenGL-accelerate: 3.1.9
pyopenxr: 1.1.4501
pyparsing: 3.2.3
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.8.1
PyQt6-Qt6: 6.8.2
PyQt6-WebEngine-commercial: 6.8.0
PyQt6-WebEngine-Qt6: 6.8.2
PyQt6_sip: 13.10.0
pytest: 8.4.1
pytest-cov: 6.2.1
python-dateutil: 2.9.0.post0
pytz: 2025.2
pyzmq: 27.0.0
qtconsole: 5.5.2
QtPy: 2.4.3
qtshim: 1.1
RandomWords: 0.4.0
requests: 2.32.3
roman-numerals-py: 3.1.0
scipy: 1.14.0
setuptools: 78.1.0
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.7
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.1.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.7.1
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.4
tornado: 6.5.1
traitlets: 5.14.3
typing_extensions: 4.14.0
tzdata: 2025.2
urllib3: 2.5.0
wcwidth: 0.2.13
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.14
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