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Changes between Initial Version and Version 1 of Ticket #18174

Timestamp:: Jul 10, 2025, 11:13:30 AM (3 months ago)
Author:: pett
Comment:

Legend:

: Unmodified
: Added
: Removed
: Modified

Ticket #18174
- Property Component Unassigned → Window Toolkit
- Property Owner set to Tom Goddard
- Property Platform → all
- Property Project → ChimeraX
- Property Status new → assigned
- Property Summary ChimeraX bug report submission → Crash on Mac waking from sleep

Ticket #18174 – Description

-              initial
+              v1
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+    "name" : "_esp.cpython-311-darwin.so"
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+[deleted to fit within ticket limits]
 ],
   "sharedCache" : {
 …
 pixel 2.67, shown at level 0.36, step 1, values float32
+> open
+> "/Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Alignment/J1898/cryosparc_P1_J1898_map_aligned_0
+> (1).mrc"
+Opened cryosparc_P1_J1898_map_aligned_0 (1).mrc as #7, grid size 144,144,144,
+pixel 2.67, shown at level 0.359, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Alignment/J1898/cryosparc_P1_J1898_map_aligned_0.mrc
+Opened cryosparc_P1_J1898_map_aligned_0.mrc as #8, grid size 144,144,144,
+pixel 2.67, shown at level 0.29, step 1, values float32
+> hide #!5 models
+> volume #6 level 0.2124
+> volume #7 level 0.1789
+> volume #8 level 0.159
+> hide #!6 models
+> show #!6 models
+> hide #!7 models
+> show #!7 models
+> surface dust #6 size 26.7
+> surface dust #7 size 26.7
+> surface dust #8 size 26.7
+> hide #!8 models
+> show #!8 models
+> hide #!8 models
+> close #8
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Alignment/J1898/cryosparc_P1_J1888_class_11_00023_volume.mrc
+Opened cryosparc_P1_J1888_class_11_00023_volume.mrc as #8, grid size
+,144,144, pixel 2.67, shown at level 0.42, step 1, values float32
+> volume #8 level 0.2093
+> surface dust #6 size 26.7
+> surface dust #7 size 26.7
+> surface dust #8 size 26.7
+> surface dust #6 size 26.7
+> surface dust #7 size 26.7
+> surface dust #8 size 26.7
+> view sel
+> view
+> view sel
+> view
+> view orient
+> view sel
+> view orient
+> view
+> view orient
+> select #7
+models selected
+> select clear
+> view orient
+> select clear
+> view orient
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> close #6-7
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Alignment/J1932/cryosparc_P1_J1932_map_aligned_0.mrc
+Opened cryosparc_P1_J1932_map_aligned_0.mrc as #6, grid size 144,144,144,
+pixel 2.67, shown at level 0.311, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Alignment/J1932/cryosparc_P1_J1932_map_aligned_1.mrc
+Opened cryosparc_P1_J1932_map_aligned_1.mrc as #7, grid size 144,144,144,
+pixel 2.67, shown at level 0.302, step 1, values float32
+> volume #6 level 0.1715
+> volume #7 level 0.1896
+> hide #!8 models
+> show #!8 models
+> select clear
+> close #6-8
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Borrelia_Burgdorferi/Motor/Local_NU/cryosparc_P1_J1937_002_volume_map_sharp.mrc
+Opened cryosparc_P1_J1937_002_volume_map_sharp.mrc as #6, grid size
+,640,640, pixel 1.35, shown at level 0.102, step 4, values float32
+> volume #6 step 1
+> surface dust #6 size 13.5
+> volume #6 level 0.07042
+> volume #6 level 0.07701
+> volume #6 level 0.1
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Homo/DFlaB3/cryosparc_P1_J1933_006_volume_map_sharp.mrc
+Opened cryosparc_P1_J1933_006_volume_map_sharp.mrc as #7, grid size
+,360,360, pixel 1.07, shown at level 0.122, step 2, values float32
+> hide #!6 models
+> volume #7 step 1
+> volume #7 level 0.0855
+> surface dust #7 size 10.7
+> volume #7 level 0.0387
+> show #!6 models
+> hide #!7 models
+> show #!5 models
+> hide #!6 models
+> select #5.106
+model selected
+> select add #5.111
+models selected
+> select add #5.110
+models selected
+> select add #5.112
+models selected
+> select add #5.103
+models selected
+> select add #5.104
+models selected
+> select add #5.108
+models selected
+> select add #5.107
+models selected
+> select add #5.105
+models selected
+> select add #5.109
+models selected
+> select add #5.98
+models selected
+> select add #5.99
+models selected
+> select add #5.100
+models selected
+> select add #5.97
+models selected
+> select add #5.101
+models selected
+> select add #5.102
+models selected
+Grouped 16 regions
+> select #5.163
+model selected
+> select add #5.26
+models selected
+> select add #5.172
+models selected
+> select add #5.23
+models selected
+> select add #5.170
+models selected
+> select add #5.30
+models selected
+> select add #5.174
+models selected
+> select add #5.32
+models selected
+> select add #5.166
+models selected
+> select add #5.25
+models selected
+> select add #5.168
+models selected
+> select add #5.18
+models selected
+> select add #5.169
+models selected
+> select add #5.21
+models selected
+> select add #5.173
+models selected
+> select add #5.17
+models selected
+> select add #5.171
+models selected
+> select add #5.27
+models selected
+> select add #5.176
+models selected
+> select add #5.22
+models selected
+> select add #5.175
+models selected
+> select add #5.28
+models selected
+> select add #5.162
+models selected
+> select add #5.24
+models selected
+> select add #5.165
+models selected
+> select add #5.19
+models selected
+> select add #5.164
+models selected
+> select add #5.29
+models selected
+> select add #5.167
+models selected
+> select add #5.20
+models selected
+> select add #5.161
+models selected
+> select add #5.31
+models selected
+Grouped 32 regions
+> select add #5.97
+models selected
+Grouped 2 regions
+> select #5.144
+model selected
+> select #5.135
+model selected
+> select add #5.138
+models selected
+> select add #5.131
+models selected
+> select add #5.130
+models selected
+> select add #5.155
+models selected
+> select add #5.160
+models selected
+> select add #5.136
+models selected
+> select add #5.134
+models selected
+> select add #5.139
+models selected
+> select add #5.17
+models selected
+> select subtract #5.17
+models selected
+> select add #5.142
+models selected
+> select add #5.137
+models selected
+> select add #5.129
+models selected
+> select add #5.133
+models selected
+> select add #5.144
+models selected
+> select add #5.132
+models selected
+> select add #5.140
+models selected
+Grouped 16 regions
+> select add #5.17
+models selected
+Grouped 2 regions
+> select add #5.251
+models selected
+> select add #5.211
+models selected
+> select add #5.253
+models selected
+> select add #5.229
+models selected
+> select add #5.264
+models selected
+> select add #5.228
+models selected
+> select add #5.268
+models selected
+> select add #5.217
+models selected
+> select add #5.247
+models selected
+> select add #5.220
+models selected
+> select add #5.244
+models selected
+> select add #5.212
+models selected
+> select clear
+> select add #5.298
+model selected
+> select add #5.208
+models selected
+> select add #5.66
+models selected
+> select add #5.300
+models selected
+> select add #5.197
+models selected
+> select add #5.64
+models selected
+> select add #5.194
+models selected
+> select add #5.59
+models selected
+> select add #5.297
+models selected
+> select add #5.58
+models selected
+> select add #5.209
+models selected
+> select add #5.51
+models selected
+> select add #5.200
+models selected
+> select add #5.63
+models selected
+> select add #5.226
+models selected
+> select add #5.284
+models selected
+> select add #5.48
+models selected
+> select add #5.193
+models selected
+> select add #5.57
+models selected
+> select add #5.295
+models selected
+> select add #5.204
+models selected
+> select add #5.65
+models selected
+> select add #5.293
+models selected
+> select add #5.206
+models selected
+> select add #5.278
+models selected
+> select add #5.215
+models selected
+> select add #5.54
+models selected
+> select subtract #5.215
+models selected
+> select add #5.224
+models selected
+> select add #5.61
+models selected
+> select add #5.280
+models selected
+> select add #5.214
+models selected
+> select add #5.56
+models selected
+> select add #5.294
+models selected
+> select add #5.207
+models selected
+> select add #5.55
+models selected
+> select add #5.296
+models selected
+> select add #5.205
+models selected
+> select add #5.60
+models selected
+> select add #5.299
+models selected
+> select add #5.195
+models selected
+> select add #5.53
+models selected
+> select add #5.196
+models selected
+> select add #5.52
+models selected
+> select add #5.282
+models selected
+> select add #5.227
+models selected
+Grouped 44 regions
+Drag select of 1303, 1323, 1321, 1267, 1324, 1326, 1277, 1320, 1328, 1331,
+, 1297, 1300, 1332, 1329, 1330, 1150, 1156, 1151, 1145, 1135, 1066, 1033,
+, 1200, 1144, 610, 1157, 1222, 1146, 1177, 1314, 1153, 1293, 1123, 1302,
+, 1187, 1226, 1204, 1036, 1179, 1172, 1219, 1327, 1078, 1164, 1039, 1031,
+, 1075, 1062, 1304, 1067, 1178, 1082, 1018, 1296, 1020, 1191, 1161, 1007,
+, 1025, 1313, 1294, 1298, 1312, 1338, 1315, 1299, 1318, 1134, 1325, 1261,
+, 1124, 1122, 1290, 1336, 226, 284, 296, 293, 304, 277, 326, 228, 232,
+, 325, 239, 301, 324, 309, 321, 1181, 1074, 1159, 1154, 1155, 1190, 1188,
+, 1163, 1152, 1162, 1063, 1171, 1166, 1185, 1175, 1238, 1240, 1241, 1239,
+, 794, 800, 798, 796, 791, 799, 808, 792, 787, 795, 814, 785, 786, 788,
+, 804, 1174, 1217, 1213, 1143, 1141, 1167, 1229, 715, 1148, 127, 143, 1195,
+, 1127, 761, 115, 718, 755, 141, 1220, 130, 716, 142, 719, 116, 1126, 721,
+, 767, 766, 1140, 120, 144, 724, 722, 1129, 125, 730, 725, 113, 727, 137,
+, 122, 1142, 132, 114, 729, 829, 823, 828, 822, 833, 819, 825, 820, 831,
+, 821
+Grouped 192 regions
+> select clear
+Showing 119 region surfaces
+> select #5.27
+model selected
+> select #5.85
+model selected
+> select clear
+> select #5.17
+model selected
+> select add #5.102
+models selected
+> select clear
+> select add #5.102
+model selected
+> select add #5.93
+models selected
+> select add #5.85
+models selected
+> select add #5.98
+models selected
+> select add #5.95
+models selected
+> select add #5.99
+models selected
+> select add #5.86
+models selected
+> select add #5.103
+models selected
+> select add #5.89
+models selected
+> select add #5.101
+models selected
+> select add #5.97
+models selected
+> select add #5.87
+models selected
+> select add #5.96
+models selected
+> select add #5.92
+models selected
+> select add #5.94
+models selected
+> select add #5.100
+models selected
+Grouped 16 regions
+> select add #5.17
+models selected
+Grouped 2 regions
+> select clear
+> select #5.5
+model selected
+> select add #5.118
+models selected
+> select add #5.105
+models selected
+> select add #5.114
+models selected
+> select add #5.108
+models selected
+> select add #5.2
+models selected
+> select add #5.18
+models selected
+> select add #5.113
+models selected
+> select add #5.109
+models selected
+> select add #5.116
+models selected
+> select add #5.119
+models selected
+> select add #5.106
+models selected
+> select add #5.112
+models selected
+> select add #5.104
+models selected
+> select add #5.107
+models selected
+> select add #5.4
+models selected
+> select add #5.110
+models selected
+> select add #5.111
+models selected
+> select add #5.3
+models selected
+> select add #5.117
+models selected
+> select add #5.115
+models selected
+Grouped 21 regions
+> select add #5.17
+models selected
+Grouped 2 regions
+> select clear
+> select #5.1
+model selected
+> select #5.2
+model selected
+> select clear
+> select #5.2
+model selected
+Drag select of 1349, 707, 709, 705, 949, 711, 713, 571, 573, 569, 572, 710,
+, 712, 557, 562, 728, 560, 1048, 726, 723, 1065, 975, 565, 568, 731, 947,
+, 708, 1035, 561, 1044, 559, 564, 1073, 566, 1010, 934, 1013, 1006, 733,
+, 1052, 1019, 1083, 567, 1045, 1028, 732, 652, 647, 639, 653, 641, 649,
+, 645, 650, 643, 642, 654, 644, 648, 651, 646, 666, 664, 663, 670, 661,
+, 660, 672, 668, 667, 659, 662, 673, 669, 658, 671
+Grouped 81 regions
+> select clear
+Showing 2 region surfaces
+> select #5.1
+model selected
+> select #5.1
+model selected
+Saving 1 regions to mrc file...
+Opened collar_mask-1_region_2.mrc as #8, grid size 255,254,76, pixel
+.75,2.75,2.75, shown at step 1, values float32
+Wrote collar_mask-1_region_2.mrc
+> select clear
+> show #!1 models
+> select add #5
+models selected
+> select subtract #5
+Nothing selected
+> hide #!5 models
+> hide #!8 models
+> show #!8 models
+> hide #!1 models
+> volume #8 level 0.01545
+> show #!4 models
+> select add #8
+models selected
+> ui mousemode right "translate selected models"
+> view matrix models #8,1,0,0,537.72,0,1,0,245.53,0,0,1,-68.051
+> view matrix models #8,1,0,0,530.77,0,1,0,254.35,0,0,1,-17.826
+> view matrix models #8,1,0,0,536.36,0,1,0,248.62,0,0,1,-17.519
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #8,0.99834,-0.05719,0.0070076,543.84,0.057217,0.99835,-0.0037198,256.65,-0.0067834,0.0041145,0.99997,-18.999
+> show #!7 models
+> hide #!7 models
+> show #!6 models
+> hide #!4 models
+> ui mousemode right "translate selected models"
+> view matrix models
+> #8,0.99834,-0.05719,0.0070076,661.52,0.057217,0.99835,-0.0037198,126.93,-0.0067834,0.0041145,0.99997,-186.56
+> volume #6 level 0.067
+> volume #6 level 0.07525
+> show #!4 models
+> hide #!4 models
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #8,0.59233,0.80449,0.044069,437.24,0.80338,-0.58558,-0.10808,556.08,-0.061145,0.099423,-0.99316,718.17
+> view matrix models
+> #8,0.62123,0.78298,-0.031937,479.78,0.78342,-0.6196,0.048405,487.58,0.018112,-0.05509,-0.99832,758.36
+> view matrix models
+> #8,0.63262,0.77303,-0.047128,489.95,0.7737,-0.62813,0.082755,472.19,0.03437,-0.088815,-0.99545,765.17
+> ui mousemode right "translate selected models"
+> view matrix models
+> #8,0.63262,0.77303,-0.047128,361.97,0.7737,-0.62813,0.082755,597.38,0.03437,-0.088815,-0.99545,769.34
+> view matrix models
+> #8,0.63262,0.77303,-0.047128,373.77,0.7737,-0.62813,0.082755,589.84,0.03437,-0.088815,-0.99545,767.77
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #8,0.63103,0.76845,-0.10624,402.02,0.77489,-0.63086,0.039546,610.62,-0.036634,-0.10728,-0.99355,762.99
+> view matrix models
+> #8,0.63192,0.76987,-0.089281,393.94,0.77486,-0.62999,0.051961,604.67,-0.016243,-0.10202,-0.99465,764.63
+> ui mousemode right "translate selected models"
+> view matrix models
+> #8,0.63192,0.76987,-0.089281,390.47,0.77486,-0.62999,0.051961,597.55,-0.016243,-0.10202,-0.99465,903.14
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #8,0.76182,0.63691,-0.11822,442.93,0.64597,-0.76057,0.065154,602.87,-0.048421,-0.12601,-0.99085,902.59
+> view matrix models
+> #8,0.78539,0.61878,0.016457,386.11,0.61897,-0.78482,-0.030564,649.28,-0.0059969,0.034191,-0.9994,880.41
+> view matrix models
+> #8,0.78486,0.61855,0.03731,376.38,0.61955,-0.78448,-0.027195,647.71,0.012447,0.04446,-0.99893,880.16
+> ui mousemode right "translate selected models"
+> view matrix models
+> #8,0.78486,0.61855,0.03731,368.84,0.61955,-0.78448,-0.027195,659.97,0.012447,0.04446,-0.99893,880.3
+> view matrix models
+> #8,0.78486,0.61855,0.03731,369.65,0.61955,-0.78448,-0.027195,666.55,0.012447,0.04446,-0.99893,871.53
+> view matrix models
+> #8,0.78486,0.61855,0.03731,385.85,0.61955,-0.78448,-0.027195,671.81,0.012447,0.04446,-0.99893,858.52
+> view matrix models
+> #8,0.78486,0.61855,0.03731,367.86,0.61955,-0.78448,-0.027195,661.99,0.012447,0.04446,-0.99893,856.67
+> view matrix models
+> #8,0.78486,0.61855,0.03731,374.5,0.61955,-0.78448,-0.027195,655.7,0.012447,0.04446,-0.99893,857.66
+> fitmap #8 inMap #6
+Fit map collar_mask-1_region_2.mrc in map
+cryosparc_P1_J1937_002_volume_map_sharp.mrc using 632567 points
+correlation = 0.598, correlation about mean = 0.1753, overlap = 1455
+steps = 104, shift = 6.6, angle = 2.72 degrees
+Position of collar_mask-1_region_2.mrc (#8) relative to
+cryosparc_P1_J1937_002_volume_map_sharp.mrc (#6) coordinates:
+Matrix rotation and translation
+.77501874 0.63193627 0.00158058 390.49696164
+.63193740 -0.77501938 -0.00029777 645.41663024
+.00103680 0.00122960 -0.99999871 860.04844668
+Axis 0.94207671 0.33539678 0.00069464
+Axis point 0.00000000 253.01130862 429.97689580
+Rotation angle (degrees) 179.95355373
+Shift along axis 584.94616953
+> volume #8 level 0.01466
+> volume #6 level 0.08167
+> ui mousemode right select
+> select clear
+> show #!5 models
+> hide #!6 models
+> show #!6 models
+> hide #!5 models
+> show #!5 models
+> hide #!5 models
+> volume #!6,8 showOutlineBox true
+> volume resample #8 onGrid #6
+Opened collar_mask-1_region_2.mrc resampled as #9, grid size 640,640,640,
+pixel 1.35, shown at step 1, values float32
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Borrelia_Burgdorferi/Motor/Masks/collar_mask-1_region_2_resampled.mrc
+> models #9
+> hide #!9 models
+> hide #!6 models
+> show #!7 models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Borrelia_Burgdorferi/Motor/Local_NU/cryosparc_P1_J1887_002_volume_map_sharp.mrc
+Opened cryosparc_P1_J1887_002_volume_map_sharp.mrc as #10, grid size
+,640,640, pixel 1.35, shown at level 0.111, step 4, values float32
+> hide #!7 models
+> volume #10 step 1
+> surface dust #10 size 13.5
+> show #!6 models
+> volume #!6,10 showOutlineBox false
+> select add #10
+models selected
+> select subtract #10
+Nothing selected
+> open
+> "/Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Borrelia_Burgdorferi/Motor/Local_NU/cryosparc_P1_J1907_002_volume_map_sharp
+> (1).mrc"
+Opened cryosparc_P1_J1907_002_volume_map_sharp (1).mrc as #11, grid size
+,640,640, pixel 1.35, shown at level 0.102, step 4, values float32
+> hide #!10 models
+> hide #!6 models
+> volume #11 step 1
+> surface dust #11 size 13.5
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Borrelia_Burgdorferi/Motor/Homo/cryosparc_P1_J1883_004_volume_map_sharp.mrc
+Opened cryosparc_P1_J1883_004_volume_map_sharp.mrc as #12, grid size
+,640,640, pixel 1.35, shown at level 0.0904, step 4, values float32
+> volume #12 step 1
+> surface dust #11 size 13.5
+> surface dust #12 size 13.5
+> hide #!11 models
+> volume #12 level 0.04293
+> hide #!12 models
+> show #!11 models
+> volume #11 level 0.06698
+> hide #!11 models
+> show #!6 models
+> volume #6 level 0.07
+> surface dust #6 size 13.5
+> view
+> view orient
+> preset "overall look" "publication 1 (silhouettes)"
+Using preset: Overall Look / Publication 1 (Silhouettes)
+> set bgColor #ffffff00
+Preset expands to these ChimeraX commands:
+    set bg white
+    graphics silhouettes t
+    lighting depthCue f
+> volume #6 level 0.08
+> volume #6 level 0.05
+> volume #6 level 0.07
+> view orient
+> volume #6 level 0.048
+> volume #6 level 0.09
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Alignment/J1959/cryosparc_P1_J1947_class_00_00028_volume.mrc
+Opened cryosparc_P1_J1947_class_00_00028_volume.mrc as #13, grid size
+,144,144, pixel 2.67, shown at level 0.435, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Alignment/J1959/cryosparc_P1_J1959_map_aligned_0.mrc
+Opened cryosparc_P1_J1959_map_aligned_0.mrc as #14, grid size 144,144,144,
+pixel 2.67, shown at level 0.32, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Alignment/J1959/cryosparc_P1_J1959_map_aligned_1.mrc
+Opened cryosparc_P1_J1959_map_aligned_1.mrc as #15, grid size 144,144,144,
+pixel 2.67, shown at level 0.348, step 1, values float32
+> hide #!4 models
+> hide #!6 models
+> volume #13 level 0.2444
+> surface dust #13 size 26.7
+> surface dust #14 size 26.7
+> surface dust #15 size 26.7
+> hide #!13 models
+> volume #14 level 0.1748
+> volume #15 level 0.2021
+> hide #!14 models
+> hide #!15 models
+> show #!14 models
+> show #!13 models
+> volume #14 level 0.2124
+> hide #!14 models
+> show #!14 models
+> hide #!14 models
+> volume #13 level 0.2465
+> hide #!13 models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Borrelia_Burgdorferi/Motor/Local_NU/cryosparc_P1_J1950_002_volume_map_sharp.mrc
+Opened cryosparc_P1_J1950_002_volume_map_sharp.mrc as #16, grid size
+,640,640, pixel 1.35, shown at level 0.114, step 4, values float32
+> volume #16 step 1
+> volume #16 level 0.1096
+> surface dust #16 size 13.5
+> hide #!16 models
+> show #!14 models
+> hide #!14 models
+> show #!13 models
+> show #!14 models
+> hide #!13 models
+> hide #!14 models
+> show #!13 models
+> show #!14 models
+> hide #!14 models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Homo/DFlaB3/cryosparc_P1_J1960_005_volume_map_sharp.mrc
+Opened cryosparc_P1_J1960_005_volume_map_sharp.mrc as #17, grid size
+,360,360, pixel 1.07, shown at level 0.122, step 2, values float32
+> hide #!13 models
+> volume #17 step 1
+> volume #17 level 0.06249
+> volume #17 level 0.06897
+> surface dust #17 size 10.7
+> hide #!17 models
+> show #!13 models
+> show #!14 models
+> hide #!13 models
+> show #!13 models
+> hide #!14 models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Homo/DFlaB3/cryosparc_P1_J1965_003_volume_map_sharp.mrc
+Opened cryosparc_P1_J1965_003_volume_map_sharp.mrc as #18, grid size
+,360,360, pixel 1.07, shown at level 0.115, step 2, values float32
+> hide #!13 models
+> volume #18 step 1
+> volume #18 level 0.05956
+> surface dust #18 size 10.7
+> hide #!18 models
+> show #!13 models
+> lighting soft
+> graphics silhouettes false
+> graphics silhouettes true
+> color #13 #cfcdeaff models
+> color #13 #eae2eaff models
+> color #13 #eae0eaff models
+> color #13 #cacacc80 models
+> color #13 #f5f1ef41 models
+> color #13 #e2ddda7f models
+> color #13 #bbbbbbff models
+> color #13 #cbcbcbff models
+> color #13 #b5b5b5ff models
+> color #13 #b7b7b7ff models
+> volume #13 level 0.25
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Local_refine_sheath_mask/DFlaB3/cryosparc_P1_J1964_002_volume_map_sharp.mrc
+Opened cryosparc_P1_J1964_002_volume_map_sharp.mrc as #19, grid size
+,360,360, pixel 1.07, shown at level 0.118, step 2, values float32
+> hide #!13 models
+> volume #19 step 1
+> surface dust #19 size 10.7
+> volume #19 level 0.0814
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Homo/DFlaB3/cryosparc_P1_J1963_004_volume_map_sharp.mrc
+Opened cryosparc_P1_J1963_004_volume_map_sharp.mrc as #20, grid size
+,360,360, pixel 1.07, shown at level 0.121, step 2, values float32
+> hide #!19 models
+> volume #20 step 1
+> surface dust #20 size 10.7
+> volume #20 level 0.07804
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Local_refine_sheath_mask/DFlaB3/Asy_part_mask-1.mrc
+Opened Asy_part_mask-1.mrc as #21, grid size 360,360,360, pixel 1.07, shown at
+level 0.0316, step 2, values float32
+> hide #!21 models
+> show #!21 models
+> select add #21
+models selected
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #21,0.99244,0.12263,0.0043353,-14.607,-0.1226,0.99243,-0.0071257,25.444,-0.0051763,0.0065404,0.99997,0.17284
+> view matrix models
+> #21,0.99193,0.12677,-0.00043293,-14.093,-0.12677,0.99191,-0.0065154,26.177,-0.00039655,0.0065177,0.99998,-0.72818
+> ui mousemode right "translate selected models"
+> view matrix models
+> #21,0.99193,0.12677,-0.00043293,-46.222,-0.12677,0.99191,-0.0065154,45.086,-0.00039655,0.0065177,0.99998,-3.9881
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #21,0.9906,0.13661,0.0068441,-48.611,-0.13653,0.99057,-0.011884,48.14,-0.008403,0.010838,0.99991,-2.9992
+> view matrix models
+> #21,0.98999,0.14093,-0.0076276,-46.203,-0.1411,0.98944,-0.033036,53.273,0.0028914,0.033782,0.99943,-7.876
+> view matrix models
+> #21,0.97752,0.19771,-0.073246,-38.067,-0.19932,0.97982,-0.015293,61.976,0.068744,0.029549,0.9972,-19.333
+> view matrix models
+> #21,0.90438,0.41872,-0.082258,-49.885,-0.42501,0.9011,-0.085904,128.07,0.038153,0.11265,0.9929,-23.017
+> ui mousemode right "translate selected models"
+> view matrix models
+> #21,0.90438,0.41872,-0.082258,-59.21,-0.42501,0.9011,-0.085904,110.27,0.038153,0.11265,0.9929,-22.013
+> view matrix models
+> #21,0.90438,0.41872,-0.082258,-59.652,-0.42501,0.9011,-0.085904,117.82,0.038153,0.11265,0.9929,-18.491
+> view matrix models
+> #21,0.90438,0.41872,-0.082258,-54.383,-0.42501,0.9011,-0.085904,113.72,0.038153,0.11265,0.9929,-19.829
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #21,0.90802,0.41382,-0.065241,-57.785,-0.41089,0.91008,0.05403,82.615,0.081734,-0.022253,0.99641,-12.025
+> fitmap #21 inMap #20
+Fit map Asy_part_mask-1.mrc in map cryosparc_P1_J1963_004_volume_map_sharp.mrc
+using 58319 points
+correlation = 0.7668, correlation about mean = 0.1429, overlap = 115.7
+steps = 208, shift = 29.1, angle = 9.01 degrees
+Position of Asy_part_mask-1.mrc (#21) relative to
+cryosparc_P1_J1963_004_volume_map_sharp.mrc (#20) coordinates:
+Matrix rotation and translation
+.84929549 0.52786331 0.00758317 -73.00642619
+-0.52789881 0.84929911 0.00372414 129.30427575
+-0.00447454 -0.00716605 0.99996431 -26.41813540
+Axis -0.01031378 0.01141951 -0.99988160
+Axis point 189.55024450 191.86230259 0.00000000
+Rotation angle (degrees) 31.86661488
+Shift along axis 28.64457190
+> view matrix models
+> #21,0.84903,0.51456,0.11989,-93.245,-0.5266,0.84259,0.11284,108.58,-0.042956,-0.15893,0.98635,2.2896
+> fitmap #21 inMap #20
+Fit map Asy_part_mask-1.mrc in map cryosparc_P1_J1963_004_volume_map_sharp.mrc
+using 58319 points
+correlation = 0.7668, correlation about mean = 0.1429, overlap = 115.7
+steps = 120, shift = 0.324, angle = 9.02 degrees
+Position of Asy_part_mask-1.mrc (#21) relative to
+cryosparc_P1_J1963_004_volume_map_sharp.mrc (#20) coordinates:
+Matrix rotation and translation
+.84932345 0.52781875 0.00755290 -72.99800381
+-0.52785413 0.84932679 0.00374458 129.28825803
+-0.00443842 -0.00716719 0.99996447 -26.42539809
+Axis -0.01033510 0.01135759 -0.99988209
+Axis point 189.55231813 191.85192476 0.00000000
+Rotation angle (degrees) 31.86358698
+Shift along axis 28.64512697
+> ui mousemode right "translate selected models"
+> view matrix models
+> #21,0.84932,0.52782,0.0075529,-71.566,-0.52785,0.84933,0.0037446,130.57,-0.0044384,-0.0071672,0.99996,-0.46812
+> fitmap #21 inMap #20
+Fit map Asy_part_mask-1.mrc in map cryosparc_P1_J1963_004_volume_map_sharp.mrc
+using 58319 points
+correlation = 0.7668, correlation about mean = 0.1434, overlap = 115.7
+steps = 160, shift = 26, angle = 0.0148 degrees
+Position of Asy_part_mask-1.mrc (#21) relative to
+cryosparc_P1_J1963_004_volume_map_sharp.mrc (#20) coordinates:
+Matrix rotation and translation
+.84940651 0.52768394 0.00763099 -73.02964530
+-0.52771902 0.84941155 0.00355654 129.26355767
+-0.00460512 -0.00704796 0.99996456 -26.40546452
+Axis -0.01004664 0.01159242 -0.99988233
+Axis point 189.54576517 191.94505266 0.00000000
+Rotation angle (degrees) 31.85447336
+Shift along axis 28.63453717
+> view matrix models
+> #21,0.84941,0.52768,0.007631,-73.825,-0.52772,0.84941,0.0035565,134.49,-0.0046051,-0.007048,0.99996,15.289
+> fitmap #21 inMap #20
+Fit map Asy_part_mask-1.mrc in map cryosparc_P1_J1963_004_volume_map_sharp.mrc
+using 58319 points
+correlation = 0.7667, correlation about mean = 0.1363, overlap = 116.1
+steps = 108, shift = 9.86, angle = 2.07 degrees
+Position of Asy_part_mask-1.mrc (#21) relative to
+cryosparc_P1_J1963_004_volume_map_sharp.mrc (#20) coordinates:
+Matrix rotation and translation
+.83393294 0.55185507 -0.00344027 -73.42512486
+-0.55183692 0.83380934 -0.01542726 140.98480837
+-0.00564508 0.01476377 0.99987507 21.84412012
+Axis 0.02734430 0.00199692 -0.99962408
+Axis point 197.91376172 191.44119035 0.00000000
+Rotation angle (degrees) 33.50800785
+Shift along axis -23.56213186
+> view matrix models
+> #21,0.83393,0.55186,-0.0034403,-73.796,-0.55184,0.83381,-0.015427,139.08,-0.0056451,0.014764,0.99988,0.25459
+> fitmap #21 inMap #20
+Fit map Asy_part_mask-1.mrc in map cryosparc_P1_J1963_004_volume_map_sharp.mrc
+using 58319 points
+correlation = 0.7667, correlation about mean = 0.1362, overlap = 116.1
+steps = 156, shift = 21.7, angle = 0.00172 degrees
+Position of Asy_part_mask-1.mrc (#21) relative to
+cryosparc_P1_J1963_004_volume_map_sharp.mrc (#20) coordinates:
+Matrix rotation and translation
+.83392547 0.55186645 -0.00342602 -73.42616340
+-0.55184822 0.83380228 -0.01540449 140.98815502
+-0.00564459 0.01473684 0.99987547 21.84734278
+Axis 0.02729876 0.00200934 -0.99962530
+Axis point 197.91311478 191.44364478 0.00000000
+Rotation angle (degrees) 33.50874061
+Shift along axis -23.56030639
+> select subtract #21
+Nothing selected
+> select add #21
+models selected
+> view matrix models
+> #21,0.83393,0.55187,-0.003426,-71.795,-0.55185,0.8338,-0.015404,138.04,-0.0056446,0.014737,0.99988,20.543
+> fitmap #21 inMap #20
+Fit map Asy_part_mask-1.mrc in map cryosparc_P1_J1963_004_volume_map_sharp.mrc
+using 58319 points
+correlation = 0.7667, correlation about mean = 0.136, overlap = 116.1
+steps = 92, shift = 3.62, angle = 0.00667 degrees
+Position of Asy_part_mask-1.mrc (#21) relative to
+cryosparc_P1_J1963_004_volume_map_sharp.mrc (#20) coordinates:
+Matrix rotation and translation
+.83390613 0.55189613 -0.00335015 -73.43627702
+-0.55187723 0.83378457 -0.01532361 140.99274481
+-0.00566374 0.01462733 0.99987697 21.86396213
+Axis 0.02712500 0.00209530 -0.99962985
+Axis point 197.90261346 191.46325336 0.00000000
+Rotation angle (degrees) 33.51058531
+Shift along axis -23.55240597
+> view matrix models
+> #21,0.83391,0.5519,-0.0033501,-69.179,-0.55188,0.83378,-0.015324,132.53,-0.0056637,0.014627,0.99988,22.417
+> fitmap #21 inMap #20
+Fit map Asy_part_mask-1.mrc in map cryosparc_P1_J1963_004_volume_map_sharp.mrc
+using 58319 points
+correlation = 0.7667, correlation about mean = 0.1359, overlap = 116.1
+steps = 84, shift = 9.49, angle = 0.00314 degrees
+Position of Asy_part_mask-1.mrc (#21) relative to
+cryosparc_P1_J1963_004_volume_map_sharp.mrc (#20) coordinates:
+Matrix rotation and translation
+.83391108 0.55188858 -0.00336078 -73.43216820
+-0.55187015 0.83379023 -0.01527057 140.98620791
+-0.00562546 0.01458901 0.99987775 21.86201743
+Axis 0.02704268 0.00205104 -0.99963218
+Axis point 197.89497625 191.45795337 0.00000000
+Rotation angle (degrees) 33.50999423
+Shift along axis -23.55061037
+> view matrix models
+> #21,0.83391,0.55189,-0.0033608,-71.931,-0.55187,0.83379,-0.015271,136.12,-0.0056255,0.014589,0.99988,21.909
+> view matrix models
+> #21,0.83391,0.55189,-0.0033608,-71.285,-0.55187,0.83379,-0.015271,135.76,-0.0056255,0.014589,0.99988,21.819
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #21,-0.99994,0.0080177,-0.0067658,342.5,0.0083566,0.99863,-0.051651,16.828,0.0063425,-0.051704,-0.99864,418.12
+> fitmap #21 inMap #20
+Fit map Asy_part_mask-1.mrc in map cryosparc_P1_J1963_004_volume_map_sharp.mrc
+using 58319 points
+correlation = 0.6013, correlation about mean = 0.01533, overlap = 91.89
+steps = 176, shift = 23.3, angle = 9.29 degrees
+Position of Asy_part_mask-1.mrc (#21) relative to
+cryosparc_P1_J1963_004_volume_map_sharp.mrc (#20) coordinates:
+Matrix rotation and translation
+-0.98761856 0.15454804 0.02691445 319.62331314
+.15475672 0.98793530 0.00583799 2.16131072
+-0.02568748 0.00993089 -0.99962065 419.92383051
+Axis 0.07757385 0.99697876 0.00395518
+Axis point 162.50516682 0.00000000 207.85758739
+Rotation angle (degrees) 178.48832383
+Shift along axis 28.61006869
+> view matrix models
+> #21,-0.98654,0.16354,0.00083302,323.4,0.15982,0.9652,-0.20701,45.595,-0.034657,-0.20409,-0.97834,443.96
+> ui mousemode right "translate selected models"
+> view matrix models
+> #21,-0.98654,0.16354,0.00083302,323.97,0.15982,0.9652,-0.20701,10.395,-0.034657,-0.20409,-0.97834,428.22
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #21,-0.86568,0.50045,0.012314,257.22,0.49704,0.86219,-0.097918,-61.736,-0.05962,-0.078645,-0.99512,420.67
+> view matrix models
+> #21,-0.84656,0.52907,0.058483,241.06,0.52858,0.84852,-0.02478,-80.277,-0.062735,0.009935,-0.99798,410.84
+> view matrix models
+> #21,-0.84457,0.53421,-0.03637,258.57,0.5332,0.8453,0.034252,-92.278,0.049041,0.0095356,-0.99875,389.97
+> fitmap #21 inMap #20
+Fit map Asy_part_mask-1.mrc in map cryosparc_P1_J1963_004_volume_map_sharp.mrc
+using 58319 points
+correlation = 0.7248, correlation about mean = 0.07063, overlap = 102.9
+steps = 120, shift = 14.9, angle = 3.52 degrees
+Position of Asy_part_mask-1.mrc (#21) relative to
+cryosparc_P1_J1963_004_volume_map_sharp.mrc (#20) coordinates:
+Matrix rotation and translation
+-0.83322647 0.55293081 -0.00102862 246.84452020
+.55290939 0.83317450 -0.01055209 -72.61476408
+-0.00497756 -0.00936103 -0.99994375 395.84992201
+Axis 0.28876397 0.95738623 -0.00519356
+Axis point 134.58636387 0.00000000 197.59502180
+Rotation angle (degrees) 179.88183564
+Shift along axis -0.29644191
+> ui mousemode right "translate selected models"
+> view matrix models
+> #21,-0.83323,0.55293,-0.0010286,232.95,0.55291,0.83317,-0.010552,-73.552,-0.0049776,-0.009361,-0.99994,395.04
+> view matrix models
+> #21,-0.83323,0.55293,-0.0010286,234.56,0.55291,0.83317,-0.010552,-77.348,-0.0049776,-0.009361,-0.99994,393.98
+> fitmap #21 inMap #20
+Fit map Asy_part_mask-1.mrc in map cryosparc_P1_J1963_004_volume_map_sharp.mrc
+using 58319 points
+correlation = 0.7248, correlation about mean = 0.07062, overlap = 102.9
+steps = 124, shift = 13.3, angle = 0.00464 degrees
+Position of Asy_part_mask-1.mrc (#21) relative to
+cryosparc_P1_J1963_004_volume_map_sharp.mrc (#20) coordinates:
+Matrix rotation and translation
+-0.83321309 0.55295094 -0.00104769 246.83345965
+.55293006 0.83316173 -0.01047725 -72.64587560
+-0.00492051 -0.00930909 -0.99994452 395.83605888
+Axis 0.28877558 0.95738291 -0.00516035
+Axis point 134.58188835 0.00000000 197.59183112
+Rotation angle (degrees) 179.88411314
+Shift along axis -0.31309744
+> view matrix models
+> #21,-0.83321,0.55295,-0.0010477,241.59,0.55293,0.83316,-0.010477,-76.183,-0.0049205,-0.0093091,-0.99994,395.53
+> fitmap #21 inMap #20
+Fit map Asy_part_mask-1.mrc in map cryosparc_P1_J1963_004_volume_map_sharp.mrc
+using 58319 points
+correlation = 0.7249, correlation about mean = 0.07063, overlap = 102.9
+steps = 88, shift = 6.34, angle = 0.00591 degrees
+Position of Asy_part_mask-1.mrc (#21) relative to
+cryosparc_P1_J1963_004_volume_map_sharp.mrc (#20) coordinates:
+Matrix rotation and translation
+-0.83324642 0.55290081 -0.00098794 246.83866174
+.55287967 0.83319590 -0.01041877 -72.65313754
+-0.00493740 -0.00922762 -0.99994519 395.82709478
+Axis 0.28874669 0.95739182 -0.00512388
+Axis point 134.58851527 0.00000000 197.58613398
+Rotation angle (degrees) 179.88182079
+Shift along axis -0.31184342
+> view matrix models
+> #21,-0.83325,0.5529,-0.00098794,237.81,0.55288,0.8332,-0.010419,-71.908,-0.0049374,-0.0092276,-0.99995,393.62
+> view matrix models
+> #21,-0.83325,0.5529,-0.00098794,235.78,0.55288,0.8332,-0.010419,-74.312,-0.0049374,-0.0092276,-0.99995,394
+> view matrix models
+> #21,-0.83325,0.5529,-0.00098794,238.72,0.55288,0.8332,-0.010419,-73.556,-0.0049374,-0.0092276,-0.99995,393.7
+> volume sel showOutlineBox true
+> hide #!21 models
+> hide #!20 models
+> show #!21 models
+> show #!20 models
+> hide #!20 models
+> show #!20 models
+> hide #!20 models
+> volume resample #21 onGrid #20
+Opened Asy_part_mask-1.mrc resampled as #22, grid size 360,360,360, pixel
+.07, shown at step 1, values float32
+> show #!21 models
+> show #!20 models
+> volume resample #21 onGrid #20
+Opened Asy_part_mask-1.mrc resampled as #23, grid size 360,360,360, pixel
+.07, shown at step 1, values float32
+> show #!21 models
+> hide #!21 models
+> select add #21
+models selected
+> select subtract #21
+Nothing selected
+> hide #!22 models
+> show #!22 models
+> close #22
+> hide #!23 models
+> show #!23 models
+> hide #!20 models
+> show #!20 models
+> volume #!20,23 showOutlineBox false
+> volume #!20,23 showOutlineBox true
+> hide #!23 models
+> show #!23 models
+> hide #!20 models
+> transparency #23.1 50
+> volume #!23 showOutlineBox false
+> volume #!23 showOutlineBox true
+> show #!20 models
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Local_refine_sheath_mask/DFlaB3/Asy_part_mask-2.mrc
+> models #23
+> hide #!23 models
+> hide #!20 models
+> show #!13 models
+> close #14-19
+> close #20
+> close #21,23
+> show #!10 models
+> hide #!10 models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/AF_FlaA2_TDE1408_J1516map_related.pdb
+Chain information for AF_FlaA2_TDE1408_J1516map_related.pdb #14
+---
+Chain | Description
+A | No description available
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/AF_FlaA3_TDE1409_J1516map_related.pdb
+Chain information for AF_FlaA3_TDE1409_J1516map_related.pdb #15
+---
+Chain | Description
+B | No description available
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/AF_FlaAX_TDE2349_J1516map_related.pdb
+Chain information for AF_FlaAX_TDE2349_J1516map_related.pdb #16
+---
+Chain | Description
+A | No description available
+> select add #14
+atoms, 1794 bonds, 212 residues, 1 model selected
+> select subtract #14
+Nothing selected
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/AF_FlaA2_TDE1408_J1516map_related.pdb
+Chain information for AF_FlaA2_TDE1408_J1516map_related.pdb #17
+---
+Chain | Description
+A | No description available
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/AF_FlaA3_TDE1409_J1516map_related.pdb
+Chain information for AF_FlaA3_TDE1409_J1516map_related.pdb #18
+---
+Chain | Description
+B | No description available
+> color #16 #edff78ff
+> color #16 #dffcddff
+> color #16 #9bccffff
+> select add #15
+atoms, 1854 bonds, 226 residues, 1 model selected
+> color #15 #76609fff
+> select subtract #15
+Nothing selected
+> select add #15
+atoms, 1854 bonds, 226 residues, 1 model selected
+> select subtract #15
+Nothing selected
+> select add #15
+atoms, 1854 bonds, 226 residues, 1 model selected
+> select subtract #15
+Nothing selected
+> hide #15 models
+> show #15 models
+> hide #15 models
+> show #15 models
+> hide #15 models
+> hide #17 models
+> show #17 models
+> select add #15
+atoms, 1854 bonds, 226 residues, 1 model selected
+> show #15 models
+> select add #18
+atoms, 3708 bonds, 452 residues, 2 models selected
+> color #18 #76609fff
+> select subtract #15
+atoms, 1854 bonds, 226 residues, 1 model selected
+> select subtract #18
+Nothing selected
+> select add #14
+atoms, 1794 bonds, 212 residues, 1 model selected
+> select add #17
+atoms, 3588 bonds, 424 residues, 2 models selected
+> color #14 #58ac5aff
+> color #17 #58ac5aff
+> select subtract #14
+atoms, 1794 bonds, 212 residues, 1 model selected
+> select subtract #17
+Nothing selected
+> select add #16
+atoms, 1669 bonds, 212 residues, 1 model selected
+> select add #15
+atoms, 3523 bonds, 438 residues, 2 models selected
+> select add #14
+atoms, 5317 bonds, 650 residues, 3 models selected
+> view matrix models
+> #14,1,0,0,-30.443,0,1,0,16.009,0,0,1,3.8313,#15,1,0,0,-30.443,0,1,0,16.009,0,0,1,3.8313,#16,1,0,0,-30.443,0,1,0,16.009,0,0,1,3.8313
+> view matrix models
+> #14,1,0,0,-15.321,0,1,0,-3.6763,0,0,1,-12.13,#15,1,0,0,-15.321,0,1,0,-3.6763,0,0,1,-12.13,#16,1,0,0,-15.321,0,1,0,-3.6763,0,0,1,-12.13
+> view matrix models
+> #14,1,0,0,81.353,0,1,0,-38.883,0,0,1,-19.127,#15,1,0,0,81.353,0,1,0,-38.883,0,0,1,-19.127,#16,1,0,0,81.353,0,1,0,-38.883,0,0,1,-19.127
+> view matrix models
+> #14,1,0,0,147.82,0,1,0,-51.008,0,0,1,-10.688,#15,1,0,0,147.82,0,1,0,-51.008,0,0,1,-10.688,#16,1,0,0,147.82,0,1,0,-51.008,0,0,1,-10.688
+> select subtract #14
+atoms, 3523 bonds, 438 residues, 2 models selected
+> select subtract #15
+atoms, 1669 bonds, 212 residues, 1 model selected
+> view matrix models #16,1,0,0,-38.326,0,1,0,-31.322,0,0,1,0.14178
+> view matrix models #16,1,0,0,-33.309,0,1,0,-11.597,0,0,1,6.2493
+> view matrix models #16,1,0,0,-53.087,0,1,0,39.612,0,0,1,-35.535
+> view matrix models #16,1,0,0,-30.327,0,1,0,47.775,0,0,1,-36.579
+> fitmap #16 inMap #13
+Fit molecule AF_FlaAX_TDE2349_J1516map_related.pdb (#16) to map
+cryosparc_P1_J1947_class_00_00028_volume.mrc (#13) using 1654 atoms
+average map value = 0.1957, steps = 80
+shifted from previous position = 7.68
+rotated from previous position = 15.2 degrees
+atoms outside contour = 1076, contour level = 0.25
+Position of AF_FlaAX_TDE2349_J1516map_related.pdb (#16) relative to
+cryosparc_P1_J1947_class_00_00028_volume.mrc (#13) coordinates:
+Matrix rotation and translation
+.97456460 0.21810548 -0.05151547 -35.13947147
+-0.20874187 0.96708851 0.14548763 39.37655800
+.08155167 -0.13103365 0.98801797 -29.13117870
+Axis -0.52599725 -0.25311958 -0.81194666
+Axis point 210.60354224 108.09136974 0.00000000
+Rotation angle (degrees) 15.23949397
+Shift along axis 32.16925082
+> view matrix models
+> #16,0.97456,0.21811,-0.051515,-38.844,-0.20874,0.96709,0.14549,41.429,0.081552,-0.13103,0.98802,-20.13
+> fitmap #16 inMap #13
+Fit molecule AF_FlaAX_TDE2349_J1516map_related.pdb (#16) to map
+cryosparc_P1_J1947_class_00_00028_volume.mrc (#13) using 1654 atoms
+average map value = 0.2463, steps = 96
+shifted from previous position = 2.46
+rotated from previous position = 21.4 degrees
+atoms outside contour = 821, contour level = 0.25
+Position of AF_FlaAX_TDE2349_J1516map_related.pdb (#16) relative to
+cryosparc_P1_J1947_class_00_00028_volume.mrc (#13) coordinates:
+Matrix rotation and translation
+.84360178 0.53665696 -0.01831254 -68.57737779
+-0.53625165 0.84374684 0.02292266 126.05216307
+.02775275 -0.00951746 0.99956951 -30.90100566
+Axis -0.03019408 -0.04287588 -0.99862404
+Axis point 184.78752362 180.09035144 0.00000000
+Rotation angle (degrees) 32.49278913
+Shift along axis 27.52452006
+> select subtract #16
+Nothing selected
+> select add #15
+atoms, 1854 bonds, 226 residues, 1 model selected
+> select subtract #15
+Nothing selected
+> select add #17
+atoms, 1794 bonds, 212 residues, 1 model selected
+> select add #18
+atoms, 3648 bonds, 438 residues, 2 models selected
+> view matrix models
+> #17,1,0,0,76.391,0,1,0,-106.14,0,0,1,7.2563,#18,1,0,0,76.391,0,1,0,-106.14,0,0,1,7.2563
+> ui mousemode right select
+> select clear
+> select add #15
+atoms, 1854 bonds, 226 residues, 1 model selected
+Drag select of 234 residues
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,1,0,0,147.84,0,1,0,-50.988,0,0,1,-10.563,#17,1,0,0,76.408,0,1,0,-106.12,0,0,1,7.3811,#18,1,0,0,76.408,0,1,0,-106.12,0,0,1,7.3811
+> select add #15
+atoms, 1854 bonds, 380 residues, 3 models selected
+> select add #17
+atoms, 3648 bonds, 515 residues, 3 models selected
+> select add #18
+atoms, 5502 bonds, 664 residues, 3 models selected
+> select subtract #17
+atoms, 3708 bonds, 452 residues, 2 models selected
+> select subtract #18
+atoms, 1854 bonds, 226 residues, 1 model selected
+> select subtract #15
+Nothing selected
+> select add #15
+atoms, 1854 bonds, 226 residues, 1 model selected
+> view matrix models #15,1,0,0,114.55,0,1,0,-48.883,0,0,1,-73.504
+> color #15 #58ac5aff
+> color #18 #58ac5aff
+> color #15 #76609fff
+> color #18 #76609fff
+> view matrix models #15,1,0,0,122.31,0,1,0,-52.098,0,0,1,-120.46
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,0.98566,0.0022882,0.16872,90.771,0.017294,0.99327,-0.11451,-31.236,-0.16784,0.11578,0.97899,-104.37
+> view matrix models
+> #15,0.92398,0.035035,0.38083,54.251,0.068788,0.96433,-0.25561,-7.6909,-0.3762,0.26238,0.88861,-71.993
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,0.92398,0.035035,0.38083,-121.37,0.068788,0.96433,-0.25561,27.213,-0.3762,0.26238,0.88861,-59.611
+> view matrix models
+> #15,0.92398,0.035035,0.38083,-166.82,0.068788,0.96433,-0.25561,28.427,-0.3762,0.26238,0.88861,67.411
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,0.88044,0.37698,-0.28758,-68.823,-0.4638,0.5587,-0.68756,245.4,-0.098526,0.73874,0.66675,10.969
+> view matrix models
+> #15,0.91511,0.39967,-0.053358,-123.39,-0.32159,0.64361,-0.69451,214.55,-0.24323,0.65271,0.7175,33.642
+> view matrix models
+> #15,0.9826,0.16015,-0.094023,-96.787,-0.18558,0.86577,-0.46475,121.11,0.0069703,0.47412,0.88043,-15.725
+> view matrix models
+> #15,0.82904,0.2084,-0.51891,5.3925,-0.47349,0.75531,-0.45312,176.61,0.29751,0.62135,0.72485,-47.514
+> view matrix models
+> #15,0.86355,0.14113,-0.48412,1.2921,-0.27147,0.93916,-0.21045,75.045,0.42496,0.31316,0.84932,-54.629
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,0.86355,0.14113,-0.48412,33.738,-0.27147,0.93916,-0.21045,142.09,0.42496,0.31316,0.84932,-48.014
+> view matrix models
+> #15,0.86355,0.14113,-0.48412,46.935,-0.27147,0.93916,-0.21045,91.288,0.42496,0.31316,0.84932,-44.048
+> view matrix models
+> #15,0.86355,0.14113,-0.48412,63.14,-0.27147,0.93916,-0.21045,126.61,0.42496,0.31316,0.84932,-48.726
+> fitmap #15 inMap #13
+Fit molecule AF_FlaA3_TDE1409_J1516map_related.pdb (#15) to map
+cryosparc_P1_J1947_class_00_00028_volume.mrc (#13) using 1810 atoms
+average map value = 0.185, steps = 84
+shifted from previous position = 6.61
+rotated from previous position = 13.8 degrees
+atoms outside contour = 1207, contour level = 0.25
+Position of AF_FlaA3_TDE1409_J1516map_related.pdb (#15) relative to
+cryosparc_P1_J1947_class_00_00028_volume.mrc (#13) coordinates:
+Matrix rotation and translation
+.80996347 0.29488307 -0.50695479 61.14797548
+-0.47644030 0.83490593 -0.27556621 183.10314160
+.34199975 0.46473225 0.81673748 -42.79256558
+Axis 0.54227330 -0.62186456 -0.56499924
+Axis point 262.76609674 0.00000000 82.58489470
+Rotation angle (degrees) 43.04620866
+Shift along axis -56.52867366
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,0.91156,0.30929,-0.27091,-3.1133,-0.33353,0.94155,-0.047304,102.86,0.24045,0.13348,0.96144,-15.777
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,0.91156,0.30929,-0.27091,-4.7426,-0.33353,0.94155,-0.047304,103.12,0.24045,0.13348,0.96144,-21.065
+> fitmap #15 inMap #13
+Fit molecule AF_FlaA3_TDE1409_J1516map_related.pdb (#15) to map
+cryosparc_P1_J1947_class_00_00028_volume.mrc (#13) using 1810 atoms
+average map value = 0.2451, steps = 60
+shifted from previous position = 5.5
+rotated from previous position = 21.8 degrees
+atoms outside contour = 879, contour level = 0.25
+Position of AF_FlaA3_TDE1409_J1516map_related.pdb (#15) relative to
+cryosparc_P1_J1947_class_00_00028_volume.mrc (#13) coordinates:
+Matrix rotation and translation
+.81065386 0.58460052 -0.03290231 -68.66903293
+-0.58530216 0.81061655 -0.01794984 149.10456039
+.01617767 0.03380890 0.99929738 15.21395357
+Axis 0.04415992 -0.04187443 -0.99814650
+Axis point 195.13840981 178.81870158 0.00000000
+Rotation angle (degrees) 35.87632265
+Shift along axis -24.46184257
+> select subtract #15
+Nothing selected
+> select add #14
+atoms, 1794 bonds, 212 residues, 1 model selected
+> view matrix models #14,1,0,0,106.35,0,1,0,-35.132,0,0,1,-98.914
+> view matrix models #14,1,0,0,88.597,0,1,0,-75.646,0,0,1,-111.63
+> view matrix models #14,1,0,0,-38.346,0,1,0,21.865,0,0,1,-26.588
+> fitmap #14 inMap #13
+Fit molecule AF_FlaA2_TDE1408_J1516map_related.pdb (#14) to map
+cryosparc_P1_J1947_class_00_00028_volume.mrc (#13) using 1741 atoms
+average map value = 0.1907, steps = 112
+shifted from previous position = 5.99
+rotated from previous position = 24 degrees
+atoms outside contour = 1165, contour level = 0.25
+Position of AF_FlaA2_TDE1408_J1516map_related.pdb (#14) relative to
+cryosparc_P1_J1947_class_00_00028_volume.mrc (#13) coordinates:
+Matrix rotation and translation
+.92470264 0.23620991 -0.29854632 20.41391322
+-0.18836573 0.96539127 0.18038308 10.92330556
+.33082228 -0.11056481 0.93719371 -57.80899932
+Axis -0.35785568 -0.77410126 -0.52221313
+Axis point 160.54621305 0.00000000 45.17965605
+Rotation angle (degrees) 23.98614204
+Shift along axis 14.42763875
+> view matrix models
+> #14,0.9247,0.23621,-0.29855,14.737,-0.18837,0.96539,0.18038,4.1556,0.33082,-0.11056,0.93719,-62.679
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14,0.98106,0.086501,-0.1733,-12.01,-0.031342,0.95384,0.29867,-54.344,0.19113,-0.28759,0.93849,-18.038
+> view matrix models
+> #14,0.98751,0.10734,-0.11532,-30.566,-0.062785,0.93946,0.33685,-56.931,0.14449,-0.32541,0.93447,-4.2851
+> view matrix models
+> #14,0.99146,0.02165,0.1286,-85.516,-0.025124,0.99936,0.02545,10.731,-0.12797,-0.028463,0.99137,-1.1436
+> view matrix models
+> #14,0.98508,0.10945,0.13283,-94.979,-0.11174,0.99369,0.0099331,31.355,-0.1309,-0.024628,0.99109,-0.94538
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14,0.98508,0.10945,0.13283,-88.095,-0.11174,0.99369,0.0099331,39.651,-0.1309,-0.024628,0.99109,-1.8914
+> view matrix models
+> #14,0.98508,0.10945,0.13283,-83.416,-0.11174,0.99369,0.0099331,37.246,-0.1309,-0.024628,0.99109,0.50859
+> fitmap #14 inMap #13
+Fit molecule AF_FlaA2_TDE1408_J1516map_related.pdb (#14) to map
+cryosparc_P1_J1947_class_00_00028_volume.mrc (#13) using 1741 atoms
+average map value = 0.222, steps = 88
+shifted from previous position = 3.34
+rotated from previous position = 25.9 degrees
+atoms outside contour = 986, contour level = 0.25
+Position of AF_FlaA2_TDE1408_J1516map_related.pdb (#14) relative to
+cryosparc_P1_J1947_class_00_00028_volume.mrc (#13) coordinates:
+Matrix rotation and translation
+.85836215 0.51286471 -0.01357207 -69.54179890
+-0.51292932 0.85842945 -0.00154318 126.10408312
+.01085922 0.00828612 0.99990670 -30.67960738
+Axis 0.00957898 -0.02380911 -0.99967063
+Axis point 194.69944433 189.86927383 0.00000000
+Rotation angle (degrees) 30.86827162
+Shift along axis 27.00093655
+> select subtract #14
+Nothing selected
+> select add #17
+atoms, 1794 bonds, 212 residues, 1 model selected
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #17,-0.8048,0.46938,-0.36328,452.71,0.53834,0.83502,-0.11371,-157.81,0.24998,-0.28709,-0.92471,493.82
+> view matrix models
+> #17,-0.95084,0.020803,-0.30898,514.22,0.079318,0.98082,-0.17805,-72.28,0.29935,-0.19381,-0.93425,477.07
+> ui mousemode right "translate selected models"
+> view matrix models
+> #17,-0.95084,0.020803,-0.30898,489.5,0.079318,0.98082,-0.17805,-2.5519,0.29935,-0.19381,-0.93425,450.84
+> view matrix models
+> #17,-0.95084,0.020803,-0.30898,443.54,0.079318,0.98082,-0.17805,-11.39,0.29935,-0.19381,-0.93425,448.43
+> view matrix models
+> #17,-0.95084,0.020803,-0.30898,434.53,0.079318,0.98082,-0.17805,20.078,0.29935,-0.19381,-0.93425,448.08
+> view matrix models
+> #17,-0.95084,0.020803,-0.30898,419.49,0.079318,0.98082,-0.17805,9.6242,0.29935,-0.19381,-0.93425,445.41
+> view matrix models
+> #17,-0.95084,0.020803,-0.30898,409.77,0.079318,0.98082,-0.17805,21.154,0.29935,-0.19381,-0.93425,450.65
+> view matrix models
+> #17,-0.95084,0.020803,-0.30898,414.66,0.079318,0.98082,-0.17805,20.56,0.29935,-0.19381,-0.93425,445.25
+> fitmap #17 inMap #13
+Fit molecule AF_FlaA2_TDE1408_J1516map_related.pdb (#17) to map
+cryosparc_P1_J1947_class_00_00028_volume.mrc (#13) using 1741 atoms
+average map value = 0.2258, steps = 88
+shifted from previous position = 13.7
+rotated from previous position = 34.4 degrees
+atoms outside contour = 942, contour level = 0.25
+Position of AF_FlaA2_TDE1408_J1516map_related.pdb (#17) relative to
+cryosparc_P1_J1947_class_00_00028_volume.mrc (#13) coordinates:
+Matrix rotation and translation
+-0.86892007 0.49493059 0.00465124 271.50263687
+.49476335 0.86829002 0.03580029 -85.13668307
+.01368003 0.03340885 -0.99934814 486.27860771
+Axis -0.25599815 -0.96651149 -0.01790192
+Axis point 146.43872302 0.00000000 244.25704519
+Rotation angle (degrees) 179.73238118
+Shift along axis 4.07608758
+> select subtract #17
+Nothing selected
+> select add #18
+atoms, 1854 bonds, 226 residues, 1 model selected
+> view matrix models #18,1,0,0,160.67,0,1,0,-103.23,0,0,1,-15.481
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,0.80113,0.10689,-0.58886,295.29,-0.070087,0.99391,0.085061,-108.55,0.59437,-0.026874,0.80374,-65.063
+> view matrix models
+> #18,0.98687,-0.022674,0.1599,133.71,0.025104,0.9996,-0.013189,-104.44,-0.15954,0.01703,0.98705,9.6633
+> view matrix models
+> #18,0.89989,0.034457,0.43476,85.701,-0.02375,0.99927,-0.030037,-93.517,-0.43547,0.016704,0.90005,69.568
+> view matrix models
+> #18,0.99816,-0.046144,0.039431,158.71,0.046589,0.99886,-0.010449,-108.21,-0.038904,0.012267,0.99917,-10.792
+> view matrix models
+> #18,-0.18969,0.96624,-0.17437,262.14,-0.9745,-0.1636,0.15354,157.44,0.11983,0.19905,0.97264,-52.616
+> view matrix models
+> #18,-0.051029,0.93392,0.35381,139.84,-0.97359,0.03241,-0.22597,208.9,-0.22251,-0.356,0.90761,80.242
+> view matrix models
+> #18,-0.26427,0.87251,0.41096,168.85,0.95149,0.30549,-0.03673,-158.89,-0.15759,0.38132,-0.91091,341.89
+> view matrix models
+> #18,-0.17586,-0.90312,0.39172,373.68,-0.9216,0.29091,0.25696,73.803,-0.34602,-0.31582,-0.88348,449.82
+> view matrix models
+> #18,0.93845,-0.10171,0.3301,116.97,0.017116,-0.9408,-0.33854,195.92,0.34499,0.32335,-0.88115,265.4
+> view matrix models
+> #18,0.72733,0.28258,-0.62541,292.69,-0.02566,0.92186,0.38668,-166.54,0.68581,-0.2652,0.67774,-25.371
+> view matrix models
+> #18,0.63051,-0.7755,-0.032658,317.95,0.77518,0.63127,-0.024349,-173.51,0.039499,-0.0099636,0.99917,-20.21
+> view matrix models
+> #18,0.1921,-0.97363,0.12305,378.7,0.98092,0.19432,0.006186,-158.51,-0.029934,0.11951,0.99238,-23.795
+> view matrix models
+> #18,-0.85604,0.32973,0.39808,328.4,-0.24547,0.41842,-0.87445,178.47,-0.4549,-0.84629,-0.27725,410.48
+> view matrix models
+> #18,-0.863,0.42172,0.27816,342.14,-0.020867,0.52037,-0.85369,127.35,-0.50476,-0.74254,-0.44028,437.98
+> view matrix models
+> #18,-0.79642,0.03891,0.60349,313.59,-0.45054,0.62749,-0.63503,137.36,-0.40339,-0.77765,-0.48222,434.9
+> view matrix models
+> #18,-0.80609,0.30941,0.50447,302.03,-0.21091,0.64627,-0.73338,117.6,-0.55294,-0.69757,-0.45569,443.04
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,-0.80609,0.30941,0.50447,194.87,-0.21091,0.64627,-0.73338,180.4,-0.55294,-0.69757,-0.45569,477.26
+> view matrix models
+> #18,-0.80609,0.30941,0.50447,192.65,-0.21091,0.64627,-0.73338,210.66,-0.55294,-0.69757,-0.45569,491.4
+> view matrix models
+> #18,-0.80609,0.30941,0.50447,189.69,-0.21091,0.64627,-0.73338,211.63,-0.55294,-0.69757,-0.45569,492.4
+> fitmap #18 inMap #13
+Fit molecule AF_FlaA3_TDE1409_J1516map_related.pdb (#18) to map
+cryosparc_P1_J1947_class_00_00028_volume.mrc (#13) using 1810 atoms
+average map value = 0.1762, steps = 144
+shifted from previous position = 6.43
+rotated from previous position = 39.6 degrees
+atoms outside contour = 1306, contour level = 0.25
+Position of AF_FlaA3_TDE1409_J1516map_related.pdb (#18) relative to
+cryosparc_P1_J1947_class_00_00028_volume.mrc (#13) coordinates:
+Matrix rotation and translation
+-0.46380271 -0.13971351 0.87485267 112.80590768
+-0.69660254 0.66764004 -0.26268172 190.91793624
+-0.54738649 -0.73125708 -0.40697804 480.72867043
+Axis -0.29329227 0.89021273 -0.34856986
+Axis point 219.52835267 0.00000000 248.66233807
+Rotation angle (degrees) 126.98244892
+Shift along axis -30.69504789
+> view matrix models
+> #18,-0.4638,-0.13971,0.87485,208.53,-0.6966,0.66764,-0.26268,191,-0.54739,-0.73126,-0.40698,473.91
+> view matrix models
+> #18,-0.4638,-0.13971,0.87485,231.57,-0.6966,0.66764,-0.26268,180.51,-0.54739,-0.73126,-0.40698,475.41
+> view matrix models
+> #18,-0.4638,-0.13971,0.87485,231.07,-0.6966,0.66764,-0.26268,180.98,-0.54739,-0.73126,-0.40698,481.44
+> view matrix models
+> #18,-0.4638,-0.13971,0.87485,157.76,-0.6966,0.66764,-0.26268,141.27,-0.54739,-0.73126,-0.40698,444.48
+> view matrix models
+> #18,-0.4638,-0.13971,0.87485,156.33,-0.6966,0.66764,-0.26268,162.46,-0.54739,-0.73126,-0.40698,472.67
+> view matrix models
+> #18,-0.4638,-0.13971,0.87485,141.28,-0.6966,0.66764,-0.26268,148.89,-0.54739,-0.73126,-0.40698,469.77
+> view matrix models
+> #18,-0.4638,-0.13971,0.87485,100.92,-0.6966,0.66764,-0.26268,181.94,-0.54739,-0.73126,-0.40698,484.14
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,-0.8601,0.23145,0.45459,200.62,-0.31582,0.45821,-0.83084,261.2,-0.40059,-0.85818,-0.32101,459.76
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,-0.8601,0.23145,0.45459,214.51,-0.31582,0.45821,-0.83084,257.54,-0.40059,-0.85818,-0.32101,456.45
+> view matrix models
+> #18,-0.8601,0.23145,0.45459,212.93,-0.31582,0.45821,-0.83084,258.93,-0.40059,-0.85818,-0.32101,462.37
+> view matrix models
+> #18,-0.8601,0.23145,0.45459,205.76,-0.31582,0.45821,-0.83084,271.41,-0.40059,-0.85818,-0.32101,460.67
+> view matrix models
+> #18,-0.8601,0.23145,0.45459,216.57,-0.31582,0.45821,-0.83084,272.11,-0.40059,-0.85818,-0.32101,456.93
+> view matrix models
+> #18,-0.8601,0.23145,0.45459,364.62,-0.31582,0.45821,-0.83084,288.13,-0.40059,-0.85818,-0.32101,471.37
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,-0.70486,0.66487,-0.24721,427.5,-0.69602,-0.71549,0.060233,311.93,-0.13683,0.21452,0.96709,45.398
+> view matrix models
+> #18,0.77749,0.34726,-0.52433,292,-0.62799,0.38391,-0.67694,314.78,-0.03378,0.85559,0.51656,41.375
+> view matrix models
+> #18,0.76732,0.5381,-0.34881,235.68,-0.5927,0.38746,-0.70611,314.68,-0.2448,0.74855,0.61624,67.12
+> view matrix models
+> #18,0.99019,0.090462,0.10649,165.05,0.0336,0.58559,-0.80991,214.63,-0.13562,0.80554,0.57681,51.195
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,0.99019,0.090462,0.10649,122.37,0.0336,0.58559,-0.80991,223.14,-0.13562,0.80554,0.57681,18.257
+> view matrix models
+> #18,0.99019,0.090462,0.10649,108.25,0.0336,0.58559,-0.80991,190,-0.13562,0.80554,0.57681,11.819
+> view matrix models
+> #18,0.99019,0.090462,0.10649,21.689,0.0336,0.58559,-0.80991,206.56,-0.13562,0.80554,0.57681,47.607
+> fitmap #18 inMap #13
+Fit molecule AF_FlaA3_TDE1409_J1516map_related.pdb (#18) to map
+cryosparc_P1_J1947_class_00_00028_volume.mrc (#13) using 1810 atoms
+average map value = 0.1684, steps = 144
+shifted from previous position = 6.85
+rotated from previous position = 46.8 degrees
+atoms outside contour = 1384, contour level = 0.25
+Position of AF_FlaA3_TDE1409_J1516map_related.pdb (#18) relative to
+cryosparc_P1_J1947_class_00_00028_volume.mrc (#13) coordinates:
+Matrix rotation and translation
+.78594127 -0.48773972 0.38000827 65.23954878
+.47632841 0.08576402 -0.87507473 207.32611999
+.39421767 0.86876607 0.29972977 15.50179404
+Axis 0.87514138 -0.00713094 0.48381476
+Axis point 0.00000000 113.28927196 119.07904694
+Rotation angle (degrees) 85.08271286
+Shift along axis 63.11539415
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,0.89044,0.21944,0.39871,-40.097,0.34628,0.24183,-0.90643,214.76,-0.29532,0.94518,0.13934,144.55
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,0.89044,0.21944,0.39871,-0.63947,0.34628,0.24183,-0.90643,178.1,-0.29532,0.94518,0.13934,126.45
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,0.84005,-0.53716,0.076058,162.62,0.41103,0.53866,-0.73546,98.295,0.35409,0.64908,0.67329,-43.959
+> view matrix models
+> #18,0.8889,0.085587,-0.45004,184.18,-0.32381,0.8123,-0.48509,129,0.32405,0.57692,0.74977,-45.773
+> view matrix models
+> #18,0.92925,0.22399,-0.29382,130.22,-0.35579,0.75685,-0.54826,153.17,0.09957,0.614,0.783,-22.189
+> view matrix models
+> #18,0.96637,-0.22297,0.12811,94.809,0.25712,0.84658,-0.46604,31.379,-0.0045416,0.4833,0.87544,-8.655
+> view matrix models
+> #18,0.87691,-0.40633,0.25677,105.26,0.47973,0.77305,-0.41504,-4.2215,-0.029852,0.48713,0.87282,-4.6894
+> view matrix models
+> #18,0.87277,-0.37271,0.31522,90.24,0.47633,0.79144,-0.38306,-12.265,-0.10671,0.48447,0.86828,8.4002
+> view matrix models
+> #18,0.88636,-0.43248,0.16528,125.12,0.45087,0.88743,-0.095832,-76.926,-0.10523,0.15946,0.98158,24.982
+> view matrix models
+> #18,0.82704,-0.54677,0.13058,154.98,0.5534,0.83272,-0.018212,-101.54,-0.098776,0.087323,0.99127,30.784
+> view matrix models
+> #18,0.85718,-0.51484,-0.013936,175.14,0.51502,0.85698,0.018337,-105.8,0.0025018,-0.022896,0.99973,26.792
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,0.85718,-0.51484,-0.013936,135.64,0.51502,0.85698,0.018337,-81.907,0.0025018,-0.022896,0.99973,16.213
+> view matrix models
+> #18,0.85718,-0.51484,-0.013936,137.4,0.51502,0.85698,0.018337,-82.097,0.0025018,-0.022896,0.99973,31.746
+> view matrix models
+> #18,0.85718,-0.51484,-0.013936,128.48,0.51502,0.85698,0.018337,-80.501,0.0025018,-0.022896,0.99973,31.106
+> fitmap #18 inMap #13
+Fit molecule AF_FlaA3_TDE1409_J1516map_related.pdb (#18) to map
+cryosparc_P1_J1947_class_00_00028_volume.mrc (#13) using 1810 atoms
+average map value = 0.2125, steps = 52
+shifted from previous position = 4.6
+rotated from previous position = 6.1 degrees
+atoms outside contour = 1098, contour level = 0.25
+Position of AF_FlaA3_TDE1409_J1516map_related.pdb (#18) relative to
+cryosparc_P1_J1947_class_00_00028_volume.mrc (#13) coordinates:
+Matrix rotation and translation
+.90422286 -0.42640262 -0.02370305 113.52761689
+.42616593 0.90452839 -0.01452603 -61.42822178
+.02763402 0.00303333 0.99961351 23.56381918
+Axis 0.02055425 -0.06009302 0.99798114
+Axis point 189.75407745 222.19918970 0.00000000
+Rotation angle (degrees) 25.28661339
+Shift along axis 29.54112955
+> select subtract #18
+Nothing selected
+> transparency #13.1 50
+> view orient
+> view
+> ui tool show "Surface Color"
+> ui tool show "Color Zone"
+> color zone #13 near #14 distance 16.02
+> color zone #13 near #14 distance 14.97
+> color zone #13 near #14 distance 4.35
+> volume splitbyzone #13
+Opened cryosparc_P1_J1947_class_00_00028_volume.mrc 0 as #19.1, grid size
+,144,144, pixel 2.67, shown at level 0.25, step 1, values float32
+Opened cryosparc_P1_J1947_class_00_00028_volume.mrc 1 as #19.2, grid size
+,144,144, pixel 2.67, shown at level 0.25, step 1, values float32
+> hide #!19 models
+> show #!19 models
+> hide #!19.2 models
+> show #!19.2 models
+> color zone #13 near #15 distance 4.35
+> hide #!19 models
+> show #!13 models
+> color zone #13 near #15 distance 4.45
+> color zone #13 near #15 distance 2.98
+> color zone #13 near #15 distance 2.91
+> color zone #13 near #15 distance 3.01
+> volume splitbyzone #13
+Opened cryosparc_P1_J1947_class_00_00028_volume.mrc 0 as #20.1, grid size
+,144,144, pixel 2.67, shown at level 0.25, step 1, values float32
+Opened cryosparc_P1_J1947_class_00_00028_volume.mrc 1 as #20.2, grid size
+,144,144, pixel 2.67, shown at level 0.25, step 1, values float32
+> hide #!20 models
+> show #!13 models
+> color zone #13 near #16 distance 3.01
+> color zone #13 near #16 distance 2.88
+> color zone #13 near #16 distance 2.97
+> color zone #13 near #16 distance 3.07
+> volume splitbyzone #13
+Opened cryosparc_P1_J1947_class_00_00028_volume.mrc 0 as #21.1, grid size
+,144,144, pixel 2.67, shown at level 0.25, step 1, values float32
+Opened cryosparc_P1_J1947_class_00_00028_volume.mrc 1 as #21.2, grid size
+,144,144, pixel 2.67, shown at level 0.25, step 1, values float32
+> hide #!21 models
+> show #!13 models
+> color zone #13 near #17 distance 3.07
+> color zone #13 near #17 distance 3.17
+> color zone #13 near #17 distance 3.07
+> color zone #13 near #17 distance 2.97
+> color zone #13 near #17 distance 2.87
+> color zone #13 near #17 distance 2.77
+> color zone #13 near #17 distance 2.67
+> color zone #13 near #17 distance 2.77
+> color zone #13 near #17 distance 2.87
+> color zone #13 near #17 distance 2.97
+> color zone #13 near #17 distance 3.07
+> volume splitbyzone #13
+Opened cryosparc_P1_J1947_class_00_00028_volume.mrc 0 as #22.1, grid size
+,144,144, pixel 2.67, shown at level 0.25, step 1, values float32
+Opened cryosparc_P1_J1947_class_00_00028_volume.mrc 1 as #22.2, grid size
+,144,144, pixel 2.67, shown at level 0.25, step 1, values float32
+> hide #!22 models
+> show #!13 models
+> color zone #13 near #18 distance 3.07
+> volume splitbyzone #13
+Opened cryosparc_P1_J1947_class_00_00028_volume.mrc 0 as #23.1, grid size
+,144,144, pixel 2.67, shown at level 0.25, step 1, values float32
+Opened cryosparc_P1_J1947_class_00_00028_volume.mrc 1 as #23.2, grid size
+,144,144, pixel 2.67, shown at level 0.25, step 1, values float32
+> hide #!23 models
+> show #!13 models
+> show #!19 models
+> hide #!19.1 models
+> show #!20 models
+> hide #!20.1 models
+> show #!21 models
+> hide #!21.1 models
+> show #!22 models
+> hide #!22.1 models
+> show #!23 models
+> hide #!23.1 models
+> volume #13 level 0.3
+> volume #13 level 0.28
+> volume #13 level 0.3
+> surface dust #13 size 26.7
+> surface dust #19.2 size 26.7
+> surface dust #20.2 size 26.7
+> surface dust #21.2 size 26.7
+> surface dust #22.2 size 26.7
+> surface dust #23.2 size 26.7
+> volume #19.2 level 0.28
+> volume #20.2 level 0.28
+> volume #21.2 level 0.28
+> volume #22.2 level 0.28
+> volume #23.2 level 0.28
+Color zone shortcut requires 1 displayed atomic model and 1 map, got 5 atomic
+models, 6 maps.
+> surface dust #13 size 26.7
+> surface dust #19.2 size 26.7
+> surface dust #20.2 size 26.7
+> surface dust #21.2 size 26.7
+> surface dust #22.2 size 26.7
+> surface dust #23.2 size 26.7
+> surface dust #13 size 26.7
+> surface dust #19.2 size 26.7
+> surface dust #20.2 size 26.7
+> surface dust #21.2 size 26.7
+> surface dust #22.2 size 26.7
+> surface dust #23.2 size 26.7
+> surface dust #13 size 26.7
+> surface dust #19.2 size 26.7
+> surface dust #20.2 size 26.7
+> surface dust #21.2 size 26.7
+> surface dust #22.2 size 26.7
+> surface dust #23.2 size 26.7
+> volume #23.2 level 0.25
+> volume #22.2 level 0.25
+> volume #21.2 level 0.25
+> volume #20.2 level 0.25
+> volume #19.2 level 0.25
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Borrelia_Burgdorferi/Motor/Local_NU/cryosparc_P1_J1950_002_volume_map_sharp.mrc
+Opened cryosparc_P1_J1950_002_volume_map_sharp.mrc as #24, grid size
+,640,640, pixel 1.35, shown at level 0.114, step 4, values float32
+> volume #24 step 1
+> hide #14-18#!13,19-23 target m
+> surface dust #24 size 13.5
+> view orient
+> view
+> volume #24 level 0.2
+> volume #24 level 0.15
+> volume #24 level 0.12
+> volume #24 level 0.13
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Local_refine_sheath_mask/DFlaB3/cryosparc_P1_J1975_003_volume_map_sharp.mrc
+Opened cryosparc_P1_J1975_003_volume_map_sharp.mrc as #25, grid size
+,360,360, pixel 1.07, shown at level 0.0963, step 2, values float32
+> hide #!24 models
+> volume #25 step 1
+> volume #25 level 0.07189
+> surface dust #25 size 10.7
+> volume #25 level 0.08
+> volume #25 level 0.09
+> volume #25 level 0.085
+> surface dust #25 size 10.7
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Local_refine_sheath_mask/DFlaB3/cryosparc_P1_J1971_003_volume_map_sharp.mrc
+Opened cryosparc_P1_J1971_003_volume_map_sharp.mrc as #26, grid size
+,360,360, pixel 1.07, shown at level 0.0969, step 2, values float32
+> hide #!25 models
+> volume #26 step 1
+> surface dust #26 size 10.7
+> volume #26 level 0.08065
+> volume #26 level 0.08
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Alignment/J1978/cryosparc_P1_J1962_class_14_00022_volume.mrc
+Opened cryosparc_P1_J1962_class_14_00022_volume.mrc as #27, grid size
+,144,144, pixel 2.67, shown at level 0.44, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Alignment/J1978/cryosparc_P1_J1978_map_aligned_0.mrc
+Opened cryosparc_P1_J1978_map_aligned_0.mrc as #28, grid size 144,144,144,
+pixel 2.67, shown at level 0.333, step 1, values float32
+> hide #!26 models
+> volume #28 level 0.2345
+> volume #27 level 0.3676
+> volume #27 level 0.259
+> show #!13 models
+> hide #!28 models
+> color single #13
+> show #14 models
+> show #15 models
+> show #16 models
+> show #17 models
+> show #18 models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/T.Denticola_WT/FlaA1_monox33.pdb
+Summary of feedback from opening
+/Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/T.Denticola_WT/FlaA1_monox33.pdb
+---
+warnings | Start residue of secondary structure not found: HELIX 1 1 TYR A 54 VAL A 57 1 4
+Start residue of secondary structure not found: HELIX 2 2 GLN A 66 LEU A 69 1
+Start residue of secondary structure not found: HELIX 3 3 LEU A 76 GLN A 78 1
+Start residue of secondary structure not found: HELIX 4 4 PRO A 90 THR A 95 1
+Start residue of secondary structure not found: HELIX 5 5 ALA A 159 ALA A 163
+5
+messages similar to the above omitted
+Chain information for FlaA1_monox33.pdb
+---
+Chain | Description
+.1/3 29.12/O 29.15/c | No description available
+.2/5 | No description available
+.4/A | No description available
+.5/AC 29.18/w | No description available
+.6/C | No description available
+.7/E | No description available
+.8/G 29.11/M 29.17/g | No description available
+.9/I | No description available
+.13/Y | No description available
+.14/a | No description available
+.16/e | No description available
+Computing secondary structure
+> close #29
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/T.Denticola_WT/FlaA1_sheath_monox33_real_refine.pdb
+Chain information for FlaA1_sheath_monox33_real_refine.pdb #29
+---
+Chain | Description
+A B C D E F G H I J K L M N O P Q R S T U V W X Y Z a b c d e f g | No description available
+> hide atoms
+> show cartoons
+> hide #!13 models
+> ui mousemode right select
+> select #29/G:26
+atoms, 7 bonds, 1 residue, 1 model selected
+> select add #29/E:226
+atoms, 13 bonds, 2 residues, 1 model selected
+> select add #29/H:225
+atoms, 20 bonds, 3 residues, 1 model selected
+> split #29
+Split FlaA1_sheath_monox33_real_refine.pdb (#29) into 33 models
+Chain information for FlaA1_sheath_monox33_real_refine.pdb A #29.1
+---
+Chain | Description
+A | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb B #29.2
+---
+Chain | Description
+B | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb C #29.3
+---
+Chain | Description
+C | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb D #29.4
+---
+Chain | Description
+D | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb E #29.5
+---
+Chain | Description
+E | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb F #29.6
+---
+Chain | Description
+F | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb G #29.7
+---
+Chain | Description
+G | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb H #29.8
+---
+Chain | Description
+H | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb I #29.9
+---
+Chain | Description
+I | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb J #29.10
+---
+Chain | Description
+J | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb K #29.11
+---
+Chain | Description
+K | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb L #29.12
+---
+Chain | Description
+L | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb M #29.13
+---
+Chain | Description
+M | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb N #29.14
+---
+Chain | Description
+N | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb O #29.15
+---
+Chain | Description
+O | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb P #29.16
+---
+Chain | Description
+P | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb Q #29.17
+---
+Chain | Description
+Q | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb R #29.18
+---
+Chain | Description
+R | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb S #29.19
+---
+Chain | Description
+S | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb T #29.20
+---
+Chain | Description
+T | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb U #29.21
+---
+Chain | Description
+U | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb V #29.22
+---
+Chain | Description
+V | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb W #29.23
+---
+Chain | Description
+W | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb X #29.24
+---
+Chain | Description
+X | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb Y #29.25
+---
+Chain | Description
+Y | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb Z #29.26
+---
+Chain | Description
+Z | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb a #29.27
+---
+Chain | Description
+a | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb b #29.28
+---
+Chain | Description
+b | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb c #29.29
+---
+Chain | Description
+c | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb d #29.30
+---
+Chain | Description
+d | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb e #29.31
+---
+Chain | Description
+e | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb f #29.32
+---
+Chain | Description
+f | No description available
+Chain information for FlaA1_sheath_monox33_real_refine.pdb g #29.33
+---
+Chain | Description
+g | No description available
+> select clear
+> select #29.5/E:187
+atoms, 6 bonds, 1 residue, 1 model selected
+> select #29.5/E:226
+atoms, 6 bonds, 1 residue, 1 model selected
+> select add #29.7/G:27
+atoms, 13 bonds, 2 residues, 2 models selected
+> select add #29.8/H:188
+atoms, 20 bonds, 3 residues, 3 models selected
+> select add #29.5
+atoms, 2683 bonds, 330 residues, 3 models selected
+> select add #29.7
+atoms, 5345 bonds, 657 residues, 3 models selected
+> select add #29.8
+atoms, 8007 bonds, 984 residues, 3 models selected
+> select subtract #29.8
+atoms, 5338 bonds, 656 residues, 2 models selected
+> select subtract #29.7
+atoms, 2669 bonds, 328 residues, 1 model selected
+> select subtract #29.5
+Nothing selected
+> hide #29.5,7-8 target m
+> select #14/A:86
+atoms, 11 bonds, 1 residue, 1 model selected
+> select #29.21/U:312
+atoms, 8 bonds, 1 residue, 1 model selected
+> hide #29.21 target m
+> select add #29.21
+atoms, 2669 bonds, 328 residues, 1 model selected
+> select #29.20/T:299
+atoms, 7 bonds, 1 residue, 1 model selected
+> select #29.22/V:304
+atoms, 8 bonds, 1 residue, 1 model selected
+> select add #29.20/T:299
+atoms, 15 bonds, 2 residues, 2 models selected
+> hide #29.20 target m
+> hide #29.22 target m
+> select add #29.20
+atoms, 2677 bonds, 329 residues, 2 models selected
+> select add #29.22
+atoms, 5338 bonds, 656 residues, 2 models selected
+> select subtract #29.20
+atoms, 2669 bonds, 328 residues, 1 model selected
+> select subtract #29.22
+Nothing selected
+> select #29.24/X:185
+atoms, 7 bonds, 1 residue, 1 model selected
+> select add #29.23/W:188
+atoms, 14 bonds, 2 residues, 2 models selected
+> select add #29.25/Y:227
+atoms, 29 bonds, 3 residues, 3 models selected
+> hide #29.23-25 target m
+> select add #29.23
+atoms, 2691 bonds, 330 residues, 3 models selected
+> select add #29.24
+atoms, 5353 bonds, 657 residues, 3 models selected
+> select add #29.25
+atoms, 8007 bonds, 984 residues, 3 models selected
+> select subtract #29.24
+atoms, 5338 bonds, 656 residues, 2 models selected
+> select subtract #29.23
+atoms, 2669 bonds, 328 residues, 1 model selected
+> select subtract #29.25
+Nothing selected
+> select clear
+Drag select of 1934 residues
+> hide #29.1-2,4,6,10,13,15,17,19 target m
+> select add #29
+atoms, 88077 bonds, 10824 residues, 34 models selected
+> select subtract #29
+Nothing selected
+> select clear
+Drag select of 647 residues
+> select add #29.28
+atoms, 2669 bonds, 706 residues, 3 models selected
+> select add #29.29
+atoms, 5338 bonds, 977 residues, 3 models selected
+> select add #29.31
+atoms, 8007 bonds, 984 residues, 3 models selected
+> hide #29.28-29 target m
+> hide #29.31 target m
+> select subtract #29.31
+atoms, 5338 bonds, 656 residues, 2 models selected
+> select subtract #29.29
+atoms, 2669 bonds, 328 residues, 1 model selected
+> select subtract #29.28
+Nothing selected
+> select #29.16/P:279
+atoms, 6 bonds, 1 residue, 1 model selected
+> select add #29.16
+atoms, 2669 bonds, 328 residues, 1 model selected
+> hide #29.16 models
+> select subtract #29.16
+Nothing selected
+> select #29.11/K:26
+atoms, 7 bonds, 1 residue, 1 model selected
+> select #29.11/K:26
+atoms, 7 bonds, 1 residue, 1 model selected
+> select add #29.11
+atoms, 2669 bonds, 328 residues, 1 model selected
+> hide #29.11 models
+> select subtract #29.11
+Nothing selected
+> select #29.33/g:310
+atoms, 10 bonds, 1 residue, 1 model selected
+> select add #29.33
+atoms, 2669 bonds, 328 residues, 1 model selected
+> hide #29.33 models
+> select subtract #29.33
+Nothing selected
+> select #29.27/a:319
+atoms, 3 bonds, 1 residue, 1 model selected
+> select clear
+> select #29.26/Z:310
+atoms, 10 bonds, 1 residue, 1 model selected
+> select add #29.26
+atoms, 2669 bonds, 328 residues, 1 model selected
+> hide #29.26 models
+> select subtract #29.26
+Nothing selected
+> color #29 #bf92bdff models
+> color #29 #bfa7a9ff models
+> color #29 #bfaba4ff models
+> color #29 #bfbba5ff models
+> color #29 #bfbdbbff models
+> color #29 #bf9db0ff models
+> color #29 #bf97aaff models
+> color #29 #bf94a7ff models
+> color #29 #d0a0b5ff models
+> show #!13 models
+> view orient
+> view
+> view orient
+> view
+> view orient
+> view
+> show #!26 models
+> hide #!13 models
+> hide #14 models
+> hide #15 models
+> hide #16 models
+> hide #17 models
+> hide #18 models
+> hide #!29 models
+> volume #26 level 0.06917
+> surface dust #26 size 10.7
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Local_refine_sheath_mask/DFlaB3/cryosparc_P1_J1979_002_volume_map_sharp.mrc
+Opened cryosparc_P1_J1979_002_volume_map_sharp.mrc as #30, grid size
+,360,360, pixel 1.07, shown at level 0.122, step 2, values float32
+> hide #!26 models
+> hide #!30 models
+> show #!30 models
+> surface dust #30 size 10.7
+> volume #30 step 1
+> volume #30 level 0.08166
+> volume #30 level 0.08
+> volume #30 level 0.085
+> volume #30 level 0.09
+> volume #30 level 0.1
+> show #!13 models
+> hide #!30 models
+> color #13 #b7b7b77e models
+> color #13 #b7b7b7ff models
+> color #13 #b7b7b782 models
+> color #13 #bbbbbbff models
+> show #!30 models
+> hide #!13 models
+> show #!26 models
+> hide #!30 models
+> show #!25 models
+> hide #!26 models
+> volume #25 level 0.09605
+> volume #25 level 0.1
+> volume #25 level 0.08
+> volume #25 level 0.09
+> volume #25 level 0.085
+> volume #25 level 0.088
+> color #25 #bbbbbbff models
+> color #25 #d0d0d0ff models
+> color #25 #c6c6c6ff models
+> show #!13 models
+> hide #!13 models
+> show #!13 models
+> hide #!25 models
+> open
+> "/Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Local_refine_sheath_mask/DFlaB3/cryosparc_P1_J1964_002_volume_map_sharp
+> (1).mrc"
+Opened cryosparc_P1_J1964_002_volume_map_sharp (1).mrc as #31, grid size
+,360,360, pixel 1.07, shown at level 0.118, step 2, values float32
+> hide #!13 models
+> volume #31 step 1
+> volume #31 level 0.07257
+> surface dust #31 size 10.7
+> volume #31 level 0.07943
+> show #!30 models
+> hide #!31 models
+> show #!25 models
+> hide #!30 models
+> volume #25 level 0.09
+> volume #25 level 0.095
+> volume #25 level 0.1
+> volume #25 level 0.09
+> surface dust #25 size 10.7
+> show #!13 models
+> hide #!13 models
+> show #14 models
+> show #15 models
+> show #16 models
+> show #17 models
+> show #18 models
+> color #25 #e2ddda7f models
+> color #25 #cacacc80 models
+> color #25 #a2a2a34d models
+> hide #!25 models
+> hide #14 models
+> hide #15 models
+> hide #16 models
+> hide #17 models
+> hide #18 models
+> show #!13 models
+> view orient
+> view
+> show #14 models
+> show #15 models
+> show #16 models
+> show #17 models
+> show #18 models
+> show #!19 models
+> show #!20 models
+> show #!21 models
+> show #!22 models
+> show #!23 models
+> hide #!13 models
+> show #!13 models
+> hide #!19 models
+> hide #!20 models
+> hide #!21 models
+> hide #!22 models
+> hide #!23 models
+> hide #!13 models
+> hide #15 models
+> hide #18 models
+> hide #16 models
+> show #18 models
+> show #15 models
+> view orient
+> view
+> hide #17 models
+> hide #15 models
+> show #15 models
+> hide #14 models
+> show #!25 models
+> hide #18 models
+> show #18 models
+> show #16 models
+> show #17 models
+> show #14 models
+> color #25 #bbbbbbff models
+> color #25 #e2ddda7f models
+> color #25 #cacacc80 models
+> color #25 #a2a2a34d models
+> hide #14 models
+> hide #15 models
+> hide #16 models
+> hide #17 models
+> hide #18 models
+> color #25 #bbbbbbff models
+> view orient
+> view
+> hide #!25 models
+> open "/Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Ref_Seven_Guo/Vibrio
+> cholerae
+> Filament/A2-sheath_sym_2.73A_/sheath_sym_2-73_real_space_refined_025_250211_verify.cif"
+Summary of feedback from opening
+/Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Ref_Seven_Guo/Vibrio cholerae
+Filament/A2-sheath_sym_2.73A_/sheath_sym_2-73_real_space_refined_025_250211_verify.cif
+---
+warnings | Unknown polymer entity '1' on line 56
+Missing or incomplete sequence information. Inferred polymer connectivity.
+Chain information for sheath_sym_2-73_real_space_refined_025_250211_verify.cif
+#32
+---
+Chain | Description
+A B C D E F G H I J K L M N O P Q R S T U V W X Y Z a b c d e f g | No description available
+> open "/Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Ref_Seven_Guo/Vibrio
+> cholerae Filament/A2-sheath_sym_2.73A_/sheath_sym_2.73A.mrc"
+Opened sheath_sym_2.73A.mrc as #33, grid size 384,384,384, pixel 1.07, shown
+at level 0.173, step 2, values float32
+> hide #!33 models
+> show #!33 models
+> hide #32 models
+> show #32 models
+> hide #!33 models
+> show #!33 models
+> show #32 cartoons
+Computing secondary structure
+> hide #32 atoms
+> volume #33 step 1
+> surface dust #33 size 10.7
+> close #32#33
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Local_refine_sheath_mask/DFlaB3/cryosparc_P1_J1985_002_volume_map_sharp.mrc
+Opened cryosparc_P1_J1985_002_volume_map_sharp.mrc as #32, grid size
+,360,360, pixel 1.07, shown at level 0.0938, step 2, values float32
+> volume #32 step 1
+> volume #32 level 0.04762
+> volume #32 level 0.05122
+> surface dust #32 size 10.7
+> volume #32 level 0.08
+> volume #32 level 0.0644
+> volume #32 level 0.08
+> volume #32 level 0.1
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Local_refine_sheath_mask/DFlaB3/cryosparc_P1_J2054_003_volume_map_sharp.mrc
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc as #33, grid size
+,360,360, pixel 1.07, shown at level 0.14, step 2, values float32
+> hide #!32 models
+> volume #33 step 1
+> surface dust #33 size 10.7
+> volume #33 level 0.1225
+> volume #33 level 0.1
+> show #14 models
+> hide #14 models
+> show #14 models
+> show #15 models
+> show #16 models
+> show #17 models
+> show #18 models
+> color #33 #99bfe596 models
+> color #33 #e2ddda7f models
+Alignment identifier is 1
+Alignment identifier is 2
+Alignment identifier is 16/A
+Alignment identifier is 3
+> ui mousemode right select
+> select #16/A:33
+atoms, 6 bonds, 1 residue, 1 model selected
+> select #16/A:23
+atoms, 8 bonds, 1 residue, 1 model selected
+> select #16/A:23-32
+atoms, 74 bonds, 10 residues, 1 model selected
+> delete atoms sel
+> delete bonds sel
+> select clear
+> select
+> #16/A:33-51,55-70,76-87,105-118,121-133,137-150,154-172,176-192,196-208,214-233
+atoms, 1231 bonds, 157 residues, 1 model selected
+> select clear
+> select #33
+models selected
+> select clear
+> select #15/B:21
+atoms, 8 bonds, 1 residue, 1 model selected
+> select #15/B:21 #18/B:21
+atoms, 16 bonds, 2 residues, 2 models selected
+> select #15/B:21-29 #18/B:21-29
+atoms, 148 bonds, 18 residues, 2 models selected
+[ID: 2] region 2 chains [1-9] RMSD: 102.061
+> delete atoms sel
+> delete bonds sel
+> hide #!33 models
+> select #15/B:45
+atoms, 8 bonds, 1 residue, 1 model selected
+> show #!33 models
+> select #15/B:46
+atoms, 10 bonds, 1 residue, 1 model selected
+> select #15/B:30 #18/B:30
+atoms, 14 bonds, 2 residues, 2 models selected
+> select #15/B:30-46 #18/B:30-46
+atoms, 250 bonds, 34 residues, 2 models selected
+[ID: 2] region 2 chains [10-26] RMSD: 92.567
+> delete atoms sel
+> delete bonds sel
+> hide #!33 models
+> show #!33 models
+> volume #33 level 0.12
+> volume #33 level 0.13
+> select #17/A:228
+atoms, 8 bonds, 1 residue, 1 model selected
+> select #14/A:228 #17/A:228
+atoms, 16 bonds, 2 residues, 2 models selected
+> select #14/A:228-236 #17/A:228-236
+atoms, 146 bonds, 18 residues, 2 models selected
+[ID: 1] region 2 chains [204-212] RMSD: 65.707
+> delete atoms sel
+> delete bonds sel
+> select #17/A:30
+atoms, 7 bonds, 1 residue, 1 model selected
+> select #14/A:25 #17/A:25
+atoms, 16 bonds, 2 residues, 2 models selected
+> select #14/A:25-30 #17/A:25-30
+atoms, 86 bonds, 12 residues, 2 models selected
+[ID: 1] region 2 chains [1-6] RMSD: 25.488
+> delete atoms sel
+> delete bonds sel
+> hide #!33 models
+> show #!33 models
+> color #33 #bbbbbbff models
+> volume #33 level 0.1
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Local_refine_sheath_mask/DFlaB3/Td_local.cxs
+> includeMaps true
+> combine #14 to18
+Expected a keyword
+> combine #14 to #18
+Expected a keyword
+> combine #14-18
+Remapping chain ID 'A' in AF_FlaAX_TDE2349_J1516map_related.pdb #16 to 'C'
+Remapping chain ID 'A' in AF_FlaA2_TDE1408_J1516map_related.pdb #17 to 'D'
+Remapping chain ID 'B' in AF_FlaA3_TDE1409_J1516map_related.pdb #18 to 'E'
+> combine #14-18
+Remapping chain ID 'A' in AF_FlaAX_TDE2349_J1516map_related.pdb #16 to 'C'
+Remapping chain ID 'A' in AF_FlaA2_TDE1408_J1516map_related.pdb #17 to 'D'
+Remapping chain ID 'B' in AF_FlaA3_TDE1409_J1516map_related.pdb #18 to 'E'
+> combine #14-18
+Remapping chain ID 'A' in AF_FlaAX_TDE2349_J1516map_related.pdb #16 to 'C'
+Remapping chain ID 'A' in AF_FlaA2_TDE1408_J1516map_related.pdb #17 to 'D'
+Remapping chain ID 'B' in AF_FlaA3_TDE1409_J1516map_related.pdb #18 to 'E'
+> combine #14-18
+Remapping chain ID 'A' in AF_FlaAX_TDE2349_J1516map_related.pdb #16 to 'C'
+Remapping chain ID 'A' in AF_FlaA2_TDE1408_J1516map_related.pdb #17 to 'D'
+Remapping chain ID 'B' in AF_FlaA3_TDE1409_J1516map_related.pdb #18 to 'E'
+> hide #14 models
+> hide #15 models
+> hide #16 models
+> hide #17 models
+> hide #18 models
+> select add #34
+atoms, 8252 bonds, 996 residues, 1 model selected
+> ui mousemode right "translate selected models"
+> view matrix models
+> #34,0.85836,0.51286,-0.013572,-70.282,-0.51293,0.85843,-0.0015432,130.7,0.010859,0.0082861,0.99991,19.738
+> ui tool show "Fit in Map"
+> fitmap #34 inMap #33
+Fit molecule combination (#34) to map
+cryosparc_P1_J2054_003_volume_map_sharp.mrc (#33) using 8049 atoms
+average map value = 0.0864, steps = 72
+shifted from previous position = 4.14
+rotated from previous position = 1.11 degrees
+atoms outside contour = 4857, contour level = 0.1
+Position of combination (#34) relative to
+cryosparc_P1_J2054_003_volume_map_sharp.mrc (#33) coordinates:
+Matrix rotation and translation
+.85024783 0.52625311 -0.01167443 -72.44442952
+-0.52637260 0.85015914 -0.01270085 133.19146648
+.00324126 0.01694398 0.99985119 20.04471036
+Axis 0.02814876 -0.01416295 -0.99950341
+Axis point 197.56523094 192.59895188 0.00000000
+Rotation angle (degrees) 31.77428827
+Shift along axis -23.96036118
+> select subtract #34
+Nothing selected
+> select add #35
+atoms, 8252 bonds, 996 residues, 1 model selected
+> select subtract #35
+Nothing selected
+> select add #36
+atoms, 8252 bonds, 996 residues, 1 model selected
+> view matrix models
+> #36,0.85836,0.51286,-0.013572,-68.733,-0.51293,0.85843,-0.0015432,121.51,0.010859,0.0082861,0.99991,-80.356
+> fitmap #36 inMap #33
+Fit molecule combination (#36) to map
+cryosparc_P1_J2054_003_volume_map_sharp.mrc (#33) using 8049 atoms
+average map value = 0.101, steps = 76
+shifted from previous position = 3.47
+rotated from previous position = 3.12 degrees
+atoms outside contour = 4024, contour level = 0.1
+Position of combination (#36) relative to
+cryosparc_P1_J2054_003_volume_map_sharp.mrc (#33) coordinates:
+Matrix rotation and translation
+.87866976 0.47729828 0.01121606 -73.46881450
+-0.47742705 0.87833851 0.02418394 109.07659952
+.00169145 -0.02660455 0.99964460 -75.55685283
+Axis -0.05311922 0.00996170 -0.99853849
+Axis point 178.29614220 190.29787889 0.00000000
+Rotation angle (degrees) 28.55886269
+Shift along axis 80.43562008
+> select subtract #36
+Nothing selected
+> select add #37
+atoms, 8252 bonds, 996 residues, 1 model selected
+> view matrix models
+> #37,0.85836,0.51286,-0.013572,-69.017,-0.51293,0.85843,-0.0015432,117.78,0.010859,0.0082861,0.99991,-130.75
+> fitmap #37 inMap #33
+Fit molecule combination (#37) to map
+cryosparc_P1_J2054_003_volume_map_sharp.mrc (#33) using 8049 atoms
+average map value = 0.08892, steps = 76
+shifted from previous position = 5.06
+rotated from previous position = 5.2 degrees
+atoms outside contour = 4677, contour level = 0.1
+Position of combination (#37) relative to
+cryosparc_P1_J2054_003_volume_map_sharp.mrc (#33) coordinates:
+Matrix rotation and translation
+.89210115 0.45132359 0.02150729 -74.25643546
+-0.45183504 0.89100402 0.04423733 95.08438864
+.00080227 -0.04918192 0.99878951 -123.01683269
+Axis -0.10286048 0.02279753 -0.99443451
+Axis point 162.00548137 173.14599167 0.00000000
+Rotation angle (degrees) 27.00746845
+Shift along axis 132.13792595
+> ui mousemode right select
+> select clear
+> hide #!33 models
+> hide #34 models
+> hide #35 models
+> hide #36 models
+> hide #37 models
+> show #!33 models
+> hide #!33 models
+> show #!32 models
+> hide #!32 models
+> show #!31 models
+> hide #!31 models
+> show #!30 models
+> hide #!30 models
+> show #!28 models
+> hide #!28 models
+> show #!19 models
+> hide #!19 models
+> show #!4 models
+> view
+> view orient
+> volume #4 level 0.1
+> ui mousemode right distance
+> ui mousemode right "tape measure"
+> marker segment #38 position 411.3,462.6,551.1 toPosition 520.8,475.3,499.4
+> color yellow radius 0.3365 label 121.8 labelHeight 12.18 labelColor yellow
+> marker segment #38 position 545.4,562,409.1 toPosition 548.6,451.5,408.6
+> color yellow radius 0.3365 label 110.5 labelHeight 11.05 labelColor yellow
+> close #38
+> view orient
+> ui tool show "Side View"
+> view
+> view orient
+> view
+> ui mousemode right "tape measure"
+> marker segment #38 position 784.6,521.5,409 toPosition 91.5,344,519.9 color
+> yellow radius 0.3365 label 724 labelHeight 72.4 labelColor yellow
+> marker delete #38
+> marker segment #38 position 784.3,513.7,402.3 toPosition 597.1,162.1,449.3
+> color yellow radius 0.3365 label 401 labelHeight 40.1 labelColor yellow
+> ui mousemode right "tape measure"
+> marker segment #38 position 736.2,628.4,416.3 toPosition 121.9,232.9,418.8
+> color yellow radius 0.3365 label 730.6 labelHeight 73.06 labelColor yellow
+> marker delete #38
+> hide #!4 models
+> show #14 models
+> show #15 models
+> show #16 models
+> show #17 models
+> show #18 models
+> show #14-18 cartoons
+> show #14-18 surfaces
+> lighting full
+> graphics silhouettes false
+> lighting flat
+> lighting full
+> lighting soft
+> lighting simple
+> graphics silhouettes false
+> lighting full
+> lighting simple
+> lighting full
+> lighting flat
+> lighting simple
+> lighting flat
+> lighting full
+> lighting soft
+> lighting flat
+> lighting soft
+> lighting flat
+> lighting full
+> lighting simple
+> lighting full
+> graphics silhouettes false
+> show #!29 models
+> show #29.3,9,12,14,18,27,30,32#!14-18 surfaces
+> close #1-3
+> show #!4 models
+> hide #!4 models
+> close #4-5
+> show #!6 models
+> hide #!6 models
+> show #!6-7 target m
+> show target m
+> hide #!6 models
+> hide target m
+> show #!6 models
+> hide #!6 models
+> show #!6 models
+> show #!6 target m
+> hide #!6 models
+> hide #34-37#!6-33 target m
+> show #!6 models
+> show #6.1 models
+> close #6
+> show #!7 models
+> show #7.1 models
+> close #7
+> show #!8 models
+> hide #!8 models
+> close #8-9
+> show #!10 models
+> show #10.1 models
+> close #10
+> show #!11 models
+> show #11.1 models
+> close #11
+> show #!12 models
+> show #12.1 models
+> close #12
+> show #!13 models
+> show #13.1 models
+> close #13
+> show #!14-18 target m
+> show #14.1 models
+> show #15.1 models
+> show #16.1 models
+> show #17.1 models
+> show #18.1 models
+> show #!19 models
+> show #!19.1 models
+> show #!19.2 models
+> show #19.1.1 models
+> close #19.1#19-23#19.2
+> show #!24 models
+> show #24.1 models
+> close #24
+> show #!25 models
+> show #25.1 models
+> show #!26 models
+> show #26.1 models
+> show #!27 models
+> show #27.1 models
+> show #!28 models
+> show #28.1 models
+> close #25-28
+> show #!29 models
+> show #!29.3 models
+> show #!29.9 models
+> show #!29.12 models
+> show #!29.14 models
+> show #!29.18 models
+> show #!29.27 models
+> show #!29.30 models
+> show #!29.32 models
+> show #!30 models
+> show #30.1 models
+> hide #!30.1 models
+> close #30
+> show #!31 models
+> show #31.1 models
+> hide #!31.1 models
+> close #31
+> show #!32 models
+> show #32.1 models
+> hide #!32.1 models
+> close #32
+> show #!33 models
+> show #33.1 models
+> show #34 models
+> show #35 models
+> show #36 models
+> show #37 models
+> hide #!33 models
+> hide #!14 models
+> hide #!15 models
+> hide #!16 models
+> hide #!17 models
+> hide #!18 models
+> show #!33 models
+> hide #!33 models
+> show #!33 models
+> hide #!33 models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Alignment/J2063/cryosparc_P1_J2063_map_aligned_0.mrc
+Opened cryosparc_P1_J2063_map_aligned_0.mrc as #1, grid size 360,360,360,
+pixel 1.07, shown at level 0.081, step 2, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Alignment/J2063/cryosparc_P1_J2063_map_aligned_1.mrc
+Opened cryosparc_P1_J2063_map_aligned_1.mrc as #2, grid size 360,360,360,
+pixel 1.07, shown at level 0.088, step 2, values float32
+> hide #!29 models
+> show #!33 models
+> hide #!33 models
+> hide #34 models
+> hide #35 models
+> hide #36 models
+> hide #37 models
+> volume #1 step 1
+> volume #2 step 1
+> volume #1 level 0.06755
+> volume #2 level 0.0636
+> volume #1 level 0.05968
+> hide #!1 models
+> show #!2 models
+> show #!33 models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Alignment/J2062/cryosparc_P1_J2062_map_aligned_0.mrc
+Opened cryosparc_P1_J2062_map_aligned_0.mrc as #3, grid size 360,360,360,
+pixel 1.07, shown at level 0.0875, step 2, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Alignment/J2062/cryosparc_P1_J2062_map_aligned_1.mrc
+Opened cryosparc_P1_J2062_map_aligned_1.mrc as #4, grid size 360,360,360,
+pixel 1.07, shown at level 0.0868, step 2, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Alignment/J2062/cryosparc_P1_J2062_map_aligned_2.mrc
+Opened cryosparc_P1_J2062_map_aligned_2.mrc as #5, grid size 360,360,360,
+pixel 1.07, shown at level 0.0951, step 2, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Alignment/J2062/cryosparc_P1_J2062_map_aligned_3.mrc
+Opened cryosparc_P1_J2062_map_aligned_3.mrc as #6, grid size 360,360,360,
+pixel 1.07, shown at level 0.0906, step 2, values float32
+> hide #!2 models
+> hide #!33 models
+> show #!33 models
+> volume #3 step 1
+> volume #4 step 1
+> volume #5 step 1
+> volume #6 step 1
+> close #1
+> surface dust #33 size 10.7
+> surface dust #3 size 10.7
+> surface dust #4 size 10.7
+> surface dust #5 size 10.7
+> surface dust #6 size 10.7
+> hide #!33 models
+> volume #3 level 0.06304
+> volume #4 level 0.06329
+> hide #!3 models
+> show #!3 models
+> hide #!3 models
+> hide #!4 models
+> volume #5 level 0.07038
+> hide #!5 models
+> hide #!6 models
+> show #!6 models
+> volume #6 level 0.0707
+> show #!3 models
+> hide #!6 models
+> show #!6 models
+> hide #!3 models
+> show #!4 models
+> hide #!6 models
+> volume #4 level 0.05309
+> hide #!4 models
+> show #!3 models
+> show #!5 models
+> show #!6 models
+> show #!33 models
+> view orient
+> hide #!5 models
+> hide #!6 models
+> hide #!3 models
+> show #!4 models
+> hide #!4 models
+> show #!5 models
+> view orient
+> volume #5 level 0.06438
+> hide #!5 models
+> show #!6 models
+> view orient
+> close #2-6
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/250202_Real_space_refine_Td_FlaB3_del/J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc as #1, grid size
+,360,360, pixel 1.07, shown at level 0.492, step 2, values float32
+> rename #33 id #2
+> show #34 models
+> show #35 models
+> show #36 models
+> show #37 models
+> hide #!2 models
+> volume #1 step 1
+> ui tool show "Volume Viewer"
+> hide #!1 models
+> volume #1 level 0.1562
+> surface dust #1 size 10.7
+> surface dust #2 size 10.7
+> select add #1
+models selected
+> ui mousemode right "translate selected models"
+> select add #2
+models selected
+> select subtract #1
+models selected
+> select subtract #2
+Nothing selected
+> fitmap #1 inMap #2
+Fit map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc in map
+cryosparc_P1_J2054_003_volume_map_sharp.mrc using 1310430 points
+correlation = 0.8342, correlation about mean = 0.3897, overlap = 6.532e+04
+steps = 68, shift = 1.37, angle = 1.74 degrees
+Position of J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc (#1) relative to
+cryosparc_P1_J2054_003_volume_map_sharp.mrc (#2) coordinates:
+Matrix rotation and translation
+.99960082 -0.02511298 0.01294385 1.69871101
+.02496959 0.99962633 0.01112321 -5.98334997
+-0.01321835 -0.01079557 0.99985435 3.96883651
+Axis -0.36165679 0.43167260 0.82635533
+Axis point 242.02373634 64.98334395 0.00000000
+Rotation angle (degrees) 1.73651638
+Shift along axis 0.08247055
+> hide #!1 models
+> combine #34-37
+Remapping chain ID 'A' in combination #35 to 'F'
+Remapping chain ID 'B' in combination #35 to 'G'
+Remapping chain ID 'C' in combination #35 to 'H'
+Remapping chain ID 'D' in combination #35 to 'I'
+Remapping chain ID 'E' in combination #35 to 'J'
+Remapping chain ID 'A' in combination #36 to 'K'
+Remapping chain ID 'B' in combination #36 to 'L'
+Remapping chain ID 'C' in combination #36 to 'M'
+Remapping chain ID 'D' in combination #36 to 'N'
+Remapping chain ID 'E' in combination #36 to 'O'
+Remapping chain ID 'A' in combination #37 to 'P'
+Remapping chain ID 'B' in combination #37 to 'Q'
+Remapping chain ID 'C' in combination #37 to 'R'
+Remapping chain ID 'D' in combination #37 to 'S'
+Remapping chain ID 'E' in combination #37 to 'T'
+> rename #3 Asym_part_model
+> rename #3 Asym_part_model.pdb
+> ui tool show "Surface Zone"
+> volume zone #2 nearAtoms #3 range 3 invert false newMap true minimalBounds
+> true bondPointSpacing 2
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone as #4, grid size
+,95,226, pixel 1.07, shown at step 1, values float32
+> volume zone #2 nearAtoms #3 range 5 invert false newMap true minimalBounds
+> true bondPointSpacing 2
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone as #5, grid size
+,99,230, pixel 1.07, shown at step 1, values float32
+> hide #!4 models
+> show #!4 models
+> hide #!5 models
+> show #!5 models
+> hide #!5 models
+> show #!5 models
+> hide #!5 models
+> show #!5 models
+> hide #!5 models
+> show #!5 models
+> hide #!5 models
+> show #!5 models
+> hide #!5 models
+> close #5
+> surface dust #4 size 10.7
+> volume #4 level 0.09848
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/T.Denticola_WT/WT_FlaB1_map_related_model-
+> nosheath.pdb
+Chain information for WT_FlaB1_map_related_model-nosheath.pdb #5
+---
+Chain | Description
+A | No description available
+> close #5
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/T.Denticola_WT/FlaB1_real_space_refined-1.pdb
+Chain information for FlaB1_real_space_refined-1.pdb #5
+---
+Chain | Description
+B | No description available
+> close #5
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/T.Denticola_WT/FlaB1_core_monox33_real_refine.pdb
+Chain information for FlaB1_core_monox33_real_refine.pdb #5
+---
+Chain | Description
+B C D E F G H I J K L M N O P Q R S T U V W X Y Z a b c d e f g h | No description available
+> show #!2 models
+> hide #!2 models
+> show #!1 models
+> hide #!1 models
+> hide #34 models
+> hide #35 models
+> hide #36 models
+> hide #37 models
+> hide #!4 models
+> show #!2 models
+> hide #3,5 atoms
+> show #3,5 cartoons
+> color #2 #e2ddda7f models
+> show #!1 models
+> hide #!2 models
+> hide #!1 models
+> hide #5 models
+> close #5
+> show #!2 models
+> hide #3 models
+> hide #!2 models
+> show #3 models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/T.Denticola_WT/FlaB1_core_monox33_real_refine.pdb
+Chain information for FlaB1_core_monox33_real_refine.pdb #5
+---
+Chain | Description
+B C D E F G H I J K L M N O P Q R S T U V W X Y Z a b c d e f g h | No description available
+> hide #3,5 atoms
+> show #3,5 cartoons
+> hide #3 models
+> show #!2 models
+> color #2 #bbbbbbff models
+> hide #!2 models
+> show #!1 models
+> volume #1 level 0.2717
+> volume #1 level 0.324
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/T.Denticola_WT/WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc
+Opened WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc as #6, grid size 360,360,360,
+pixel 1.07, shown at level 0.421, step 2, values float32
+> hide #!1 models
+> volume #6 step 1
+> surface dust #6 size 10.7
+> select add #6
+models selected
+> select add #5
+atoms, 72435 bonds, 9438 residues, 3 models selected
+> show #!1 models
+> hide #5 models
+> hide #!6 models
+> show #!6 models
+> select subtract #6
+atoms, 72435 bonds, 9438 residues, 1 model selected
+> select subtract #5
+Nothing selected
+> hide #!1 models
+> show #!1 models
+> hide #!6 models
+> show #!6 models
+> hide #!1 models
+> show #!1 models
+> hide #!1 models
+> show #!1 models
+> hide #!6 models
+> volume #1 level 0.2146
+> show #!6 models
+> hide #!1 models
+> volume #6 level 0.2886
+> hide #!6 models
+> show #!1 models
+> show #!6 models
+> hide #!1 models
+> show #!14 models
+> hide #!14 models
+> show #5 models
+> select add #5
+atoms, 72435 bonds, 9438 residues, 1 model selected
+> select add #6
+atoms, 72435 bonds, 9438 residues, 3 models selected
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #5,0.30125,0.95296,0.033532,-54.681,0.95303,-0.29973,-0.043617,74.174,-0.031514,0.045096,-0.99849,379.66,#6,0.30125,0.95296,0.033532,-54.681,0.95303,-0.29973,-0.043617,74.174,-0.031514,0.045096,-0.99849,379.66
+> select add #6
+atoms, 72435 bonds, 9438 residues, 4 models selected
+> select subtract #6
+atoms, 72435 bonds, 9438 residues, 1 model selected
+> select subtract #5
+Nothing selected
+> show #!1 models
+> hide #5 models
+> show #5 models
+> select add #5
+atoms, 72435 bonds, 9438 residues, 1 model selected
+> select add #6
+atoms, 72435 bonds, 9438 residues, 4 models selected
+> view matrix models
+> #5,0.073911,0.99647,0.039713,-20.693,0.9945,-0.070687,-0.077229,28.95,-0.07415,0.045203,-0.99622,387.36,#6,0.073911,0.99647,0.039713,-20.693,0.9945,-0.070687,-0.077229,28.95,-0.07415,0.045203,-0.99622,387.36
+> ui mousemode right "translate selected models"
+> view matrix models
+> #5,0.073911,0.99647,0.039713,-22.689,0.9945,-0.070687,-0.077229,29.355,-0.07415,0.045203,-0.99622,399.73,#6,0.073911,0.99647,0.039713,-22.689,0.9945,-0.070687,-0.077229,29.355,-0.07415,0.045203,-0.99622,399.73
+> select subtract #6
+atoms, 72435 bonds, 9438 residues, 1 model selected
+> select subtract #5
+Nothing selected
+> fitmap #6 inMap #1
+Fit map WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc in map
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc using 712592 points
+correlation = 0.787, correlation about mean = 0.3528, overlap = 1.699e+05
+steps = 108, shift = 6.21, angle = 5.37 degrees
+Position of WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc (#1) coordinates:
+Matrix rotation and translation
+.15059908 0.98845196 0.01681237 -31.03545300
+.98858724 -0.15064320 0.00138226 30.22882149
+.00389896 0.01641233 -0.99985771 397.82795122
+Axis 0.75847802 0.65166286 0.00682705
+Axis point 0.00000000 27.14753288 199.15476673
+Rotation angle (degrees) 179.43230160
+Shift along axis -1.12471785
+> fitmap #5 inMap #6
+Fit molecule FlaB1_core_monox33_real_refine.pdb (#5) to map
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) using 72006 atoms
+average map value = 0.2181, steps = 96
+shifted from previous position = 0.904
+rotated from previous position = 4.86 degrees
+atoms outside contour = 50793, contour level = 0.28858
+Position of FlaB1_core_monox33_real_refine.pdb (#5) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) coordinates:
+Matrix rotation and translation
+.99981037 0.01947344 0.00012250 -3.75486251
+-0.01947329 0.99980975 -0.00112089 4.04724758
+-0.00014431 0.00111829 0.99999936 5.35638304
+Axis 0.05739713 0.00683909 -0.99832800
+Axis point 208.03562598 178.53058064 0.00000000
+Rotation angle (degrees) 1.11768116
+Shift along axis -5.53526602
+> hide #!1 models
+> color #6 #e2ddda7f models
+> color #6 #9bccffff models
+> preset "overall look" interactive
+Using preset: Overall Look / Interactive
+> set bgColor transparent
+Preset expands to these ChimeraX commands:
+    ~set bg
+    graphics silhouettes f
+    lighting depthCue t
+> color #6 #bbbbbbff models
+> color #6 #cacacc80 models
+> select add #5
+atoms, 72435 bonds, 9438 residues, 1 model selected
+> view matrix models
+> #5,0.10642,0.99432,0.0027324,-21.86,0.99428,-0.10639,-0.0090576,24.114,-0.0087155,0.0036807,-0.99996,402.26
+> fitmap #5 inMap #6
+Fit molecule FlaB1_core_monox33_real_refine.pdb (#5) to map
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) using 72006 atoms
+average map value = 0.4794, steps = 52
+shifted from previous position = 0.632
+rotated from previous position = 1.12 degrees
+atoms outside contour = 27842, contour level = 0.28858
+Position of FlaB1_core_monox33_real_refine.pdb (#5) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) coordinates:
+Matrix rotation and translation
+.00000000 0.00001603 0.00004721 0.03143148
+-0.00001602 1.00000000 -0.00006028 0.03242751
+-0.00004721 0.00006028 1.00000000 0.02029151
+Axis 0.77058485 0.60352032 -0.20484679
+Axis point 0.00000000 -471.32718152 141.14884957
+Rotation angle (degrees) 0.00448183
+Shift along axis 0.03963464
+> fitmap #5 inMap #6
+Fit molecule FlaB1_core_monox33_real_refine.pdb (#5) to map
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) using 72006 atoms
+average map value = 0.4794, steps = 28
+shifted from previous position = 0.000852
+rotated from previous position = 0.00727 degrees
+atoms outside contour = 27834, contour level = 0.28858
+Position of FlaB1_core_monox33_real_refine.pdb (#5) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) coordinates:
+Matrix rotation and translation
+.00000000 0.00001296 0.00002146 0.03752378
+-0.00001296 1.00000000 0.00006387 0.00791065
+-0.00002146 -0.00006387 1.00000000 0.03854631
+Axis -0.93087848 0.31269529 -0.18890982
+Axis point 0.00000000 485.96868363 -318.37846794
+Rotation angle (degrees) 0.00393137
+Shift along axis -0.03973823
+> fitmap #5 inMap #6
+Fit molecule FlaB1_core_monox33_real_refine.pdb (#5) to map
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) using 72006 atoms
+average map value = 0.4794, steps = 28
+shifted from previous position = 0.00345
+rotated from previous position = 0.00188 degrees
+atoms outside contour = 27830, contour level = 0.28858
+Position of FlaB1_core_monox33_real_refine.pdb (#5) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) coordinates:
+Matrix rotation and translation
+.00000000 0.00001342 0.00004242 0.03457351
+-0.00001342 1.00000000 0.00003870 0.01362994
+-0.00004242 -0.00003870 1.00000000 0.03459421
+Axis -0.65627828 0.71939303 -0.22753569
+Axis point 704.16192718 -0.00000000 -493.86200309
+Rotation angle (degrees) 0.00337874
+Shift along axis -0.02075598
+> select subtract #5
+Nothing selected
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/FlaB1_core_monox33_Asym_map_related.pdb
+> models #5
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/FlaB1_core_monox33_Asym_map_related.pdb
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb #7
+---
+Chain | Description
+B C D E F G H I J K L M N O P Q R S T U V W X Y Z a b c d e f g h | No description available
+> hide #5,7 cartoons
+> show #5,7 cartoons
+> hide #5,7 atoms
+> select add #7
+atoms, 72435 bonds, 9438 residues, 1 model selected
+> color #6 #cacaccd8 models
+> color #6 #cacaccbf models
+> color #6 #bbbbbbff models
+> lighting soft
+> lighting flat
+> lighting full
+> view matrix models #7,1,0,0,-2.5355,0,1,0,3.1225,0,0,1,91.101
+> view matrix models #7,1,0,0,1.3205,0,1,0,3.4718,0,0,1,156.5
+> select subtract #7
+Nothing selected
+> hide #!6 models
+> show #!6 models
+> select add #7
+atoms, 72435 bonds, 9438 residues, 1 model selected
+> view matrix models #7,1,0,0,1.4197,0,1,0,2.1336,0,0,1,104.29
+> view matrix models #7,1,0,0,1.3843,0,1,0,2.6563,0,0,1,124.73
+> view matrix models #7,1,0,0,3.1347,0,1,0,2.2631,0,0,1,132.34
+> fitmap #7 inMap #6
+Fit molecule FlaB1_core_monox33_Asym_map_related.pdb (#7) to map
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) using 72006 atoms
+average map value = 0.1254, steps = 212
+shifted from previous position = 4.39
+rotated from previous position = 4.05 degrees
+atoms outside contour = 62230, contour level = 0.28858
+Position of FlaB1_core_monox33_Asym_map_related.pdb (#7) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) coordinates:
+Matrix rotation and translation
+.05550497 0.99842240 -0.00847874 -8.88964916
+.99845790 -0.05549436 0.00148195 12.10961839
+.00100908 -0.00854792 -0.99996295 272.27452413
+Axis -0.72646209 -0.68720173 0.00257100
+Axis point 0.00000000 10.90626035 136.09466305
+Rotation angle (degrees) 179.60447092
+Shift along axis -1.16374034
+> view matrix models
+> #7,0.99751,0.070479,-0.0034249,-10.546,-0.070477,0.99751,0.00072234,13.741,0.0034673,-0.00047916,0.99999,111.79
+> fitmap #7 inMap #6
+Fit molecule FlaB1_core_monox33_Asym_map_related.pdb (#7) to map
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) using 72006 atoms
+average map value = 0.1969, steps = 96
+shifted from previous position = 3.43
+rotated from previous position = 0.348 degrees
+atoms outside contour = 54951, contour level = 0.28858
+Position of FlaB1_core_monox33_Asym_map_related.pdb (#7) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) coordinates:
+Matrix rotation and translation
+.04982283 0.99872012 -0.00870579 -7.80566248
+.99875327 -0.04979369 0.00353249 10.65322815
+.00309447 -0.00887094 -0.99995586 292.20655313
+Axis -0.72450187 -0.68927011 0.00193663
+Axis point 0.00000000 9.90278020 146.06366062
+Rotation angle (degrees) 179.50954382
+Shift along axis -1.12183758
+> hide #!6 models
+> select subtract #7
+Nothing selected
+> hide #5 models
+> show #5 models
+> hide #7 models
+> show #7 models
+> hide #7 models
+> show #7 models
+> select add #7
+atoms, 72435 bonds, 9438 residues, 1 model selected
+> view matrix models
+> #7,0.99709,0.07617,-0.0014192,-14.839,-0.07617,0.99709,0.00023923,15.484,0.0014333,-0.00013043,1,104.19
+> show #!6 models
+> fitmap #7 inMap #6
+Fit molecule FlaB1_core_monox33_Asym_map_related.pdb (#7) to map
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) using 72006 atoms
+average map value = 0.3449, steps = 128
+shifted from previous position = 0.808
+rotated from previous position = 1.54 degrees
+atoms outside contour = 41044, contour level = 0.28858
+Position of FlaB1_core_monox33_Asym_map_related.pdb (#7) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) coordinates:
+Matrix rotation and translation
+.07662568 0.99702360 -0.00851071 -12.64926972
+.99705375 -0.07659236 0.00417486 15.97651055
+.00351058 -0.00880554 -0.99995506 297.54579744
+Axis -0.73369207 -0.67947998 0.00170411
+Axis point 0.00000000 14.74244936 148.71223904
+Rotation angle (degrees) 179.49315771
+Shift along axis -1.06800039
+> hide #!6 models
+> select subtract #7
+Nothing selected
+> show #!6 models
+> hide #!6 models
+> hide #7 models
+> show #7 models
+> hide #7 models
+> show #7 models
+> hide #7 models
+> show #7 models
+> hide #7 models
+> show #7 models
+> hide #5 models
+> show #5 models
+> hide #7 models
+> show #7 models
+> hide #5 models
+> show #5 models
+> hide #5 models
+> show #5 models
+> hide #5 models
+> show #5 models
+> hide #7 models
+> show #7 models
+> hide #7 models
+> show #7 models
+> ui mousemode right select
+> select #7/B:195
+atoms, 4 bonds, 1 residue, 1 model selected
+> select clear
+> split #5
+Split FlaB1_core_monox33_real_refine.pdb (#5) into 33 models
+Chain information for FlaB1_core_monox33_real_refine.pdb B #5.1
+---
+Chain | Description
+B | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb C #5.2
+---
+Chain | Description
+C | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb D #5.3
+---
+Chain | Description
+D | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb E #5.4
+---
+Chain | Description
+E | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb F #5.5
+---
+Chain | Description
+F | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb G #5.6
+---
+Chain | Description
+G | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb H #5.7
+---
+Chain | Description
+H | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb I #5.8
+---
+Chain | Description
+I | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb J #5.9
+---
+Chain | Description
+J | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb K #5.10
+---
+Chain | Description
+K | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb L #5.11
+---
+Chain | Description
+L | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb M #5.12
+---
+Chain | Description
+M | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb N #5.13
+---
+Chain | Description
+N | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb O #5.14
+---
+Chain | Description
+O | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb P #5.15
+---
+Chain | Description
+P | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb Q #5.16
+---
+Chain | Description
+Q | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb R #5.17
+---
+Chain | Description
+R | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb S #5.18
+---
+Chain | Description
+S | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb T #5.19
+---
+Chain | Description
+T | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb U #5.20
+---
+Chain | Description
+U | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb V #5.21
+---
+Chain | Description
+V | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb W #5.22
+---
+Chain | Description
+W | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb X #5.23
+---
+Chain | Description
+X | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb Y #5.24
+---
+Chain | Description
+Y | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb Z #5.25
+---
+Chain | Description
+Z | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb a #5.26
+---
+Chain | Description
+a | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb b #5.27
+---
+Chain | Description
+b | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb c #5.28
+---
+Chain | Description
+c | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb d #5.29
+---
+Chain | Description
+d | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb e #5.30
+---
+Chain | Description
+e | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb f #5.31
+---
+Chain | Description
+f | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb g #5.32
+---
+Chain | Description
+g | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb h #5.33
+---
+Chain | Description
+h | No description available
+> split #7
+Split FlaB1_core_monox33_Asym_map_related.pdb (#7) into 33 models
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb B #7.1
+---
+Chain | Description
+B | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb C #7.2
+---
+Chain | Description
+C | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb D #7.3
+---
+Chain | Description
+D | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb E #7.4
+---
+Chain | Description
+E | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb F #7.5
+---
+Chain | Description
+F | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb G #7.6
+---
+Chain | Description
+G | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb H #7.7
+---
+Chain | Description
+H | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb I #7.8
+---
+Chain | Description
+I | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb J #7.9
+---
+Chain | Description
+J | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb K #7.10
+---
+Chain | Description
+K | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb L #7.11
+---
+Chain | Description
+L | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb M #7.12
+---
+Chain | Description
+M | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb N #7.13
+---
+Chain | Description
+N | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb O #7.14
+---
+Chain | Description
+O | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb P #7.15
+---
+Chain | Description
+P | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb Q #7.16
+---
+Chain | Description
+Q | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb R #7.17
+---
+Chain | Description
+R | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb S #7.18
+---
+Chain | Description
+S | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb T #7.19
+---
+Chain | Description
+T | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb U #7.20
+---
+Chain | Description
+U | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb V #7.21
+---
+Chain | Description
+V | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb W #7.22
+---
+Chain | Description
+W | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb X #7.23
+---
+Chain | Description
+X | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb Y #7.24
+---
+Chain | Description
+Y | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb Z #7.25
+---
+Chain | Description
+Z | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb a #7.26
+---
+Chain | Description
+a | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb b #7.27
+---
+Chain | Description
+b | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb c #7.28
+---
+Chain | Description
+c | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb d #7.29
+---
+Chain | Description
+d | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb e #7.30
+---
+Chain | Description
+e | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb f #7.31
+---
+Chain | Description
+f | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb g #7.32
+---
+Chain | Description
+g | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb h #7.33
+---
+Chain | Description
+h | No description available
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> select #7.30/e:202
+atoms, 6 bonds, 1 residue, 1 model selected
+> select add #7.26/a:220
+atoms, 18 bonds, 2 residues, 2 models selected
+> select add #7.23/X:55
+atoms, 26 bonds, 3 residues, 3 models selected
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> select add #7.24/Y:198
+atoms, 36 bonds, 4 residues, 4 models selected
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> select add #7.20/U:115
+atoms, 41 bonds, 5 residues, 5 models selected
+> hide #!7 models
+> show #!7 models
+> select add #7.17/R:213
+atoms, 49 bonds, 6 residues, 6 models selected
+> hide #!7 models
+> show #!7 models
+> select add #7.18/S:108
+atoms, 56 bonds, 7 residues, 7 models selected
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> select add #7.14/O:205
+atoms, 64 bonds, 8 residues, 8 models selected
+> hide #!7 models
+> show #!7 models
+> select add #7.11/L:180
+atoms, 74 bonds, 9 residues, 9 models selected
+> hide #!7 models
+> show #!7 models
+> select add #7.8/I:220
+atoms, 86 bonds, 10 residues, 10 models selected
+> hide #!7 models
+> show #!7 models
+> select add #7.9/J:111
+atoms, 94 bonds, 11 residues, 11 models selected
+> select add #7.5/F:62
+atoms, 98 bonds, 12 residues, 12 models selected
+> select add #7.4/E:198
+atoms, 108 bonds, 13 residues, 13 models selected
+> select clear
+> select #7.20/U:119
+atoms, 4 bonds, 1 residue, 1 model selected
+> select add #7.19/T:122
+atoms, 11 bonds, 2 residues, 2 models selected
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> select add #7.18/S:206
+atoms, 14 bonds, 3 residues, 3 models selected
+> select add #7.17/R:175
+atoms, 18 bonds, 4 residues, 4 models selected
+> hide #!7 models
+> show #!7 models
+> select add #7.14/O:94
+atoms, 22 bonds, 5 residues, 5 models selected
+> select add #7.13/N:80
+atoms, 29 bonds, 6 residues, 6 models selected
+> hide #!7 models
+> show #!7 models
+> select add #7.11/L:209
+atoms, 37 bonds, 7 residues, 7 models selected
+> select add #7.10/K:154
+atoms, 52 bonds, 8 residues, 8 models selected
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> select add #7.9/J:94
+atoms, 56 bonds, 9 residues, 9 models selected
+> select add #7.8/I:119
+atoms, 60 bonds, 10 residues, 10 models selected
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> select add #7.4/E:206
+atoms, 63 bonds, 11 residues, 11 models selected
+> select add #7.5/F:205
+atoms, 71 bonds, 12 residues, 12 models selected
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> select add #7.3/D:195
+atoms, 75 bonds, 13 residues, 13 models selected
+> select add #7.2/C:206
+atoms, 78 bonds, 14 residues, 14 models selected
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> select add #7.32/g:119
+atoms, 82 bonds, 15 residues, 15 models selected
+> select add #7.31/f:122
+atoms, 89 bonds, 16 residues, 16 models selected
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> select add #7.30/e:115
+atoms, 94 bonds, 17 residues, 17 models selected
+> select add #7.29/d:122
+atoms, 101 bonds, 18 residues, 18 models selected
+> hide #!7 models
+> show #!7 models
+> select add #7.26/a:176
+atoms, 105 bonds, 19 residues, 19 models selected
+> select add #7.25/Z:122
+atoms, 112 bonds, 20 residues, 20 models selected
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> select add #7.24/Y:198
+atoms, 122 bonds, 21 residues, 21 models selected
+> select add #7.23/X:118
+atoms, 128 bonds, 22 residues, 22 models selected
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> hide #!5 models
+> select add #7.1
+atoms, 2323 bonds, 308 residues, 23 models selected
+> select add #7.6
+atoms, 4518 bonds, 594 residues, 24 models selected
+> select add #7.7
+atoms, 6713 bonds, 880 residues, 25 models selected
+> select add #7.12
+atoms, 8908 bonds, 1166 residues, 26 models selected
+> select add #7.15
+atoms, 11103 bonds, 1452 residues, 27 models selected
+> select add #7.16
+atoms, 13298 bonds, 1738 residues, 28 models selected
+> select add #7.21
+atoms, 15493 bonds, 2024 residues, 29 models selected
+> select add #7.22
+atoms, 17688 bonds, 2310 residues, 30 models selected
+> select add #7.27
+atoms, 19883 bonds, 2596 residues, 31 models selected
+> select add #7.28
+atoms, 22078 bonds, 2882 residues, 32 models selected
+> select add #7.33
+atoms, 24273 bonds, 3168 residues, 33 models selected
+> select add #7.32
+atoms, 26464 bonds, 3453 residues, 33 models selected
+> select subtract #7.32
+atoms, 24269 bonds, 3167 residues, 32 models selected
+> select add #7.31
+atoms, 26457 bonds, 3452 residues, 32 models selected
+> select subtract #7.31
+atoms, 24262 bonds, 3166 residues, 31 models selected
+> select add #7.30
+atoms, 26452 bonds, 3451 residues, 31 models selected
+> select subtract #7.30
+atoms, 24257 bonds, 3165 residues, 30 models selected
+> select add #7.29
+atoms, 26445 bonds, 3450 residues, 30 models selected
+> select subtract #7.29
+atoms, 24250 bonds, 3164 residues, 29 models selected
+> select add #7.26
+atoms, 26441 bonds, 3449 residues, 29 models selected
+> select subtract #7.26
+atoms, 24246 bonds, 3163 residues, 28 models selected
+> select add #7.25
+atoms, 26434 bonds, 3448 residues, 28 models selected
+> select subtract #7.25
+atoms, 24239 bonds, 3162 residues, 27 models selected
+> select add #7.24
+atoms, 26424 bonds, 3447 residues, 27 models selected
+> select subtract #7.24
+atoms, 24229 bonds, 3161 residues, 26 models selected
+> select add #7.23
+atoms, 26418 bonds, 3446 residues, 26 models selected
+> select subtract #7.23
+atoms, 24223 bonds, 3160 residues, 25 models selected
+> select add #7.20
+atoms, 26414 bonds, 3445 residues, 25 models selected
+> select subtract #7.20
+atoms, 24219 bonds, 3159 residues, 24 models selected
+> select add #7.19
+atoms, 26407 bonds, 3444 residues, 24 models selected
+> select subtract #7.19
+atoms, 24212 bonds, 3158 residues, 23 models selected
+> select add #7.18
+atoms, 26404 bonds, 3443 residues, 23 models selected
+> select subtract #7.18
+atoms, 24209 bonds, 3157 residues, 22 models selected
+> select add #7.17
+atoms, 26400 bonds, 3442 residues, 22 models selected
+> select subtract #7.17
+atoms, 24205 bonds, 3156 residues, 21 models selected
+> select add #7.14
+atoms, 26396 bonds, 3441 residues, 21 models selected
+> select subtract #7.14
+atoms, 24201 bonds, 3155 residues, 20 models selected
+> select add #7.13
+atoms, 26389 bonds, 3440 residues, 20 models selected
+> select subtract #7.13
+atoms, 24194 bonds, 3154 residues, 19 models selected
+> select add #7.11
+atoms, 26381 bonds, 3439 residues, 19 models selected
+> select subtract #7.11
+atoms, 24186 bonds, 3153 residues, 18 models selected
+> select add #7.10
+atoms, 26366 bonds, 3438 residues, 18 models selected
+> select subtract #7.10
+atoms, 24171 bonds, 3152 residues, 17 models selected
+> select add #7.9
+atoms, 26362 bonds, 3437 residues, 17 models selected
+> select subtract #7.9
+atoms, 24167 bonds, 3151 residues, 16 models selected
+> select add #7.8
+atoms, 26358 bonds, 3436 residues, 16 models selected
+> select subtract #7.8
+atoms, 24163 bonds, 3150 residues, 15 models selected
+> select add #7.5
+atoms, 26350 bonds, 3435 residues, 15 models selected
+> select subtract #7.5
+atoms, 24155 bonds, 3149 residues, 14 models selected
+> select add #7.4
+atoms, 26347 bonds, 3434 residues, 14 models selected
+> select subtract #7.4
+atoms, 24152 bonds, 3148 residues, 13 models selected
+> select add #7.3
+atoms, 26343 bonds, 3433 residues, 13 models selected
+> select subtract #7.3
+atoms, 24148 bonds, 3147 residues, 12 models selected
+> select add #7.2
+atoms, 26340 bonds, 3432 residues, 12 models selected
+> select subtract #7.2
+atoms, 24145 bonds, 3146 residues, 11 models selected
+> show sel surfaces
+> delete atoms (#!7.1,6-7,12,15-16,21-22,27-28,33 & sel)
+> delete bonds (#!7.1,6-7,12,15-16,21-22,27-28,33 & sel)
+> show #!5 models
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> hide #!5 models
+> show #!5 models
+> show #!6 models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/FlaB1_core_monox33_Asym_map_related.pdb
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb #8
+---
+Chain | Description
+B C D E F G H I J K L M N O P Q R S T U V W X Y Z a b c d e f g h | No description available
+> hide #8#5.1-33#7.2-5,8-11,13-14,17-20,23-26,29-32 atoms
+> show #8#5.1-33#7.2-5,8-11,13-14,17-20,23-26,29-32 cartoons
+> split #8
+Split FlaB1_core_monox33_Asym_map_related.pdb (#8) into 33 models
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb B #8.1
+---
+Chain | Description
+B | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb C #8.2
+---
+Chain | Description
+C | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb D #8.3
+---
+Chain | Description
+D | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb E #8.4
+---
+Chain | Description
+E | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb F #8.5
+---
+Chain | Description
+F | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb G #8.6
+---
+Chain | Description
+G | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb H #8.7
+---
+Chain | Description
+H | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb I #8.8
+---
+Chain | Description
+I | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb J #8.9
+---
+Chain | Description
+J | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb K #8.10
+---
+Chain | Description
+K | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb L #8.11
+---
+Chain | Description
+L | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb M #8.12
+---
+Chain | Description
+M | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb N #8.13
+---
+Chain | Description
+N | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb O #8.14
+---
+Chain | Description
+O | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb P #8.15
+---
+Chain | Description
+P | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb Q #8.16
+---
+Chain | Description
+Q | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb R #8.17
+---
+Chain | Description
+R | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb S #8.18
+---
+Chain | Description
+S | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb T #8.19
+---
+Chain | Description
+T | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb U #8.20
+---
+Chain | Description
+U | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb V #8.21
+---
+Chain | Description
+V | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb W #8.22
+---
+Chain | Description
+W | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb X #8.23
+---
+Chain | Description
+X | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb Y #8.24
+---
+Chain | Description
+Y | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb Z #8.25
+---
+Chain | Description
+Z | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb a #8.26
+---
+Chain | Description
+a | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb b #8.27
+---
+Chain | Description
+b | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb c #8.28
+---
+Chain | Description
+c | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb d #8.29
+---
+Chain | Description
+d | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb e #8.30
+---
+Chain | Description
+e | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb f #8.31
+---
+Chain | Description
+f | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb g #8.32
+---
+Chain | Description
+g | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb h #8.33
+---
+Chain | Description
+h | No description available
+> hide #!8 models
+> show #!8 models
+> select add #8
+atoms, 72435 bonds, 9438 residues, 34 models selected
+> ui mousemode right "translate selected models"
+> view matrix models #8,1,0,0,-0.54674,0,1,0,-0.28934,0,0,1,-86.116
+> hide #!6 models
+> select subtract #8
+Nothing selected
+> hide #!7 models
+> select add #8
+atoms, 72435 bonds, 9438 residues, 34 models selected
+> view matrix models #8,1,0,0,-0.87915,0,1,0,-0.2928,0,0,1,-104.78
+> show #!6 models
+> hide #!5 models
+> select subtract #8
+Nothing selected
+> combine #8
+> hide #!8 models
+> fitmap #9 inMap #6
+Fit molecule combination (#9) to map WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc
+(#6) using 72006 atoms
+average map value = 0.3277, steps = 160
+shifted from previous position = 1.45
+rotated from previous position = 2.8 degrees
+atoms outside contour = 43430, contour level = 0.28858
+Position of combination (#9) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) coordinates:
+Matrix rotation and translation
+.17406976 0.98469319 -0.00888917 -28.74800234
+.98472499 -0.17402408 0.00568397 36.81119434
+.00405003 -0.00974280 -0.99994433 506.83488443
+Axis -0.76617532 -0.64262966 0.00157930
+Axis point 0.00000000 32.12676592 253.26863864
+Rotation angle (degrees) 179.42317144
+Shift along axis -0.82951197
+> close #8
+> rename #9 FlaB1_core_monox33_Asym_map_related.pdb
+> hide #!6 models
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!5 models
+> hide #!5 models
+> show #!5 models
+> hide #!5 models
+> show #!5 models
+> hide #9 models
+> show #9 models
+> hide #9 models
+> show #9 models
+> hide #9 models
+> show #9 models
+> hide #9 models
+> show #9 models
+> hide #9 models
+> show #9 models
+> select add #9
+atoms, 72435 bonds, 9438 residues, 1 model selected
+> show #!6 models
+> hide #!6 models
+> show #!6 models
+> hide #!6 models
+> view matrix models
+> #9,0.99881,-0.04884,0.00069214,14.579,0.048841,0.99881,-0.00021329,-8.3884,-0.0006809,0.00024684,1,-53.165
+> show #!6 models
+> hide #!6 models
+> view matrix models
+> #9,0.99881,-0.04884,0.00069214,15.382,0.048841,0.99881,-0.00021329,-8.4768,-0.0006809,0.00024684,1,-104.6
+> view matrix models
+> #9,0.99881,-0.04884,0.00069214,15.368,0.048841,0.99881,-0.00021329,-9.1625,-0.0006809,0.00024684,1,-103.28
+> fitmap #9 inMap #6
+Fit molecule FlaB1_core_monox33_Asym_map_related.pdb (#9) to map
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) using 72006 atoms
+average map value = 0.3277, steps = 100
+shifted from previous position = 5.66
+rotated from previous position = 0.00158 degrees
+atoms outside contour = 43429, contour level = 0.28858
+Position of FlaB1_core_monox33_Asym_map_related.pdb (#9) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) coordinates:
+Matrix rotation and translation
+.17406903 0.98469347 -0.00887256 -28.75159503
+.98472520 -0.17402363 0.00566197 36.81450684
+.00403126 -0.00972261 -0.99994460 506.82169387
+Axis -0.76617512 -0.64262990 0.00158000
+Axis point 0.00000000 32.12534036 253.26233945
+Rotation angle (degrees) 179.42474891
+Shift along axis -0.82856591
+> fitmap #9 inMap #6
+Fit molecule FlaB1_core_monox33_Asym_map_related.pdb (#9) to map
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) using 72006 atoms
+average map value = 0.3277, steps = 84
+shifted from previous position = 0.0196
+rotated from previous position = 0.00156 degrees
+atoms outside contour = 43433, contour level = 0.28858
+Position of FlaB1_core_monox33_Asym_map_related.pdb (#9) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) coordinates:
+Matrix rotation and translation
+.17406440 0.98469408 -0.00889521 -28.73875896
+.98472609 -0.17401904 0.00564757 36.81923409
+.00401319 -0.00974239 -0.99994448 506.84689683
+Axis -0.76617361 -0.64263167 0.00159329
+Axis point 0.00000000 32.12304845 253.27466036
+Rotation angle (degrees) 179.42454642
+Shift along axis -0.83477146
+> fitmap #9 inMap #6
+Fit molecule FlaB1_core_monox33_Asym_map_related.pdb (#9) to map
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) using 72006 atoms
+average map value = 0.3277, steps = 64
+shifted from previous position = 0.0217
+rotated from previous position = 0.00194 degrees
+atoms outside contour = 43439, contour level = 0.28858
+Position of FlaB1_core_monox33_Asym_map_related.pdb (#9) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) coordinates:
+Matrix rotation and translation
+.17404873 0.98469712 -0.00886533 -28.75275299
+.98472883 -0.17400348 0.00564835 36.80771672
+.00401931 -0.00971304 -0.99994474 506.82264269
+Axis -0.76616852 -0.64263777 0.00158156
+Axis point 0.00000000 32.12021128 253.26297098
+Rotation angle (degrees) 179.42561112
+Shift along axis -0.82300694
+> fitmap #9 inMap #6
+Fit molecule FlaB1_core_monox33_Asym_map_related.pdb (#9) to map
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) using 72006 atoms
+average map value = 0.3277, steps = 64
+shifted from previous position = 0.0171
+rotated from previous position = 0.00618 degrees
+atoms outside contour = 43432, contour level = 0.28858
+Position of FlaB1_core_monox33_Asym_map_related.pdb (#9) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) coordinates:
+Matrix rotation and translation
+.17405506 0.98469688 -0.00876743 -28.77371103
+.98472746 -0.17400978 0.00569303 36.80340370
+.00408029 -0.00962443 -0.99994535 506.81076909
+Axis -0.76617062 -0.64263538 0.00152971
+Axis point 0.00000000 32.12197797 253.25835556
+Rotation angle (degrees) 179.42725500
+Shift along axis -0.83032464
+> view matrix models
+> #9,0.99881,-0.048825,0.00071644,9.7958,0.048825,0.99881,-9.3646e-05,-9.9303,-0.00071101,0.00012851,1,-104.65
+> fitmap #9 inMap #6
+Fit molecule FlaB1_core_monox33_Asym_map_related.pdb (#9) to map
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) using 72006 atoms
+average map value = 0.3277, steps = 44
+shifted from previous position = 0.175
+rotated from previous position = 0.00832 degrees
+atoms outside contour = 43455, contour level = 0.28858
+Position of FlaB1_core_monox33_Asym_map_related.pdb (#9) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) coordinates:
+Matrix rotation and translation
+.17417960 0.98467454 -0.00880309 -28.78056021
+.98470572 -0.17413476 0.00563266 36.83843256
+.00401341 -0.00964955 -0.99994538 506.82434003
+Axis -0.76621129 -0.64258681 0.00156309
+Axis point 0.00000000 32.13687677 253.26467399
+Rotation angle (degrees) 179.42860336
+Shift along axis -0.82769024
+> fitmap #9 inMap #6
+Fit molecule FlaB1_core_monox33_Asym_map_related.pdb (#9) to map
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) using 72006 atoms
+average map value = 0.3277, steps = 44
+shifted from previous position = 0.0207
+rotated from previous position = 0.00967 degrees
+atoms outside contour = 43430, contour level = 0.28858
+Position of FlaB1_core_monox33_Asym_map_related.pdb (#9) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) coordinates:
+Matrix rotation and translation
+.17405714 0.98469659 -0.00875830 -28.77744403
+.98472775 -0.17401349 0.00552684 36.84767808
+.00391820 -0.00958653 -0.99994636 506.81800163
+Axis -0.76617148 -0.64263424 0.00157962
+Axis point -0.00000000 32.12363836 253.26246531
+Rotation angle (degrees) 179.43488708
+Shift along axis -0.83054112
+> fitmap #9 inMap #6
+Fit molecule FlaB1_core_monox33_Asym_map_related.pdb (#9) to map
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) using 72006 atoms
+average map value = 0.3277, steps = 60
+shifted from previous position = 0.0163
+rotated from previous position = 0.00982 degrees
+atoms outside contour = 43433, contour level = 0.28858
+Position of FlaB1_core_monox33_Asym_map_related.pdb (#9) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#6) coordinates:
+Matrix rotation and translation
+.17408345 0.98469212 -0.00873784 -28.78484908
+.98472242 -0.17403827 0.00569506 36.80911135
+.00408716 -0.00959577 -0.99994560 506.80050595
+Axis -0.76617991 -0.64262434 0.00151779
+Axis point 0.00000000 32.12620043 253.25362811
+Rotation angle (degrees) 179.42825805
+Shift along axis -0.83083908
+> ui mousemode right select
+> select clear
+> hide #!5 models
+> show #!5 models
+> hide #!5 models
+> show #!5 models
+> hide #9 models
+> show #!7 models
+> hide #!7 models
+> show #9 models
+> hide #9 models
+> show #9 models
+> hide #9 models
+> show #9 models
+> select #9/L:114
+atoms, 6 bonds, 1 residue, 1 model selected
+> select add #9/M:195
+atoms, 10 bonds, 2 residues, 1 model selected
+> select add #9/J:198
+atoms, 20 bonds, 3 residues, 1 model selected
+> select add #9/h:194
+atoms, 27 bonds, 4 residues, 1 model selected
+> hide #9 models
+> show #9 models
+> select add #9/E:195
+atoms, 31 bonds, 5 residues, 1 model selected
+> select add #9/H:195
+atoms, 35 bonds, 6 residues, 1 model selected
+> hide #9 models
+> show #9 models
+> select add #9/D:195
+atoms, 39 bonds, 7 residues, 1 model selected
+> select add #9/G:198
+atoms, 49 bonds, 8 residues, 1 model selected
+> hide #9 models
+> show #9 models
+> select add #9/g:195
+atoms, 53 bonds, 9 residues, 1 model selected
+> select add #9/B:195
+atoms, 57 bonds, 10 residues, 1 model selected
+> select add #9/e:199
+atoms, 62 bonds, 11 residues, 1 model selected
+> select add #9/c:195
+atoms, 66 bonds, 12 residues, 1 model selected
+> hide #9 models
+> show #9 models
+> hide #9 models
+> show #9 models
+> select add #9/a:195
+atoms, 70 bonds, 13 residues, 1 model selected
+> select add #9/b:195
+atoms, 74 bonds, 14 residues, 1 model selected
+> hide #9 models
+> show #9 models
+> select add #9/Y:195
+atoms, 78 bonds, 15 residues, 1 model selected
+> select add #9/W:195
+atoms, 82 bonds, 16 residues, 1 model selected
+> hide #9 models
+> show #9 models
+> select add #9/U:199
+atoms, 87 bonds, 17 residues, 1 model selected
+> select add #9/V:198
+atoms, 97 bonds, 18 residues, 1 model selected
+> hide #9 models
+> show #9 models
+> hide #9 models
+> show #9 models
+> select add #9/S:195
+atoms, 101 bonds, 19 residues, 1 model selected
+> select add #9/Q:195
+atoms, 105 bonds, 20 residues, 1 model selected
+> hide #9 models
+> show #9 models
+> select add #9/O:195
+atoms, 109 bonds, 21 residues, 1 model selected
+> select add #9/P:195
+atoms, 113 bonds, 22 residues, 1 model selected
+> hide #9 models
+> show #9 models
+> split #9
+Split FlaB1_core_monox33_Asym_map_related.pdb (#9) into 33 models
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb B #9.1
+---
+Chain | Description
+B | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb C #9.2
+---
+Chain | Description
+C | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb D #9.3
+---
+Chain | Description
+D | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb E #9.4
+---
+Chain | Description
+E | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb F #9.5
+---
+Chain | Description
+F | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb G #9.6
+---
+Chain | Description
+G | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb H #9.7
+---
+Chain | Description
+H | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb I #9.8
+---
+Chain | Description
+I | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb J #9.9
+---
+Chain | Description
+J | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb K #9.10
+---
+Chain | Description
+K | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb L #9.11
+---
+Chain | Description
+L | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb M #9.12
+---
+Chain | Description
+M | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb N #9.13
+---
+Chain | Description
+N | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb O #9.14
+---
+Chain | Description
+O | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb P #9.15
+---
+Chain | Description
+P | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb Q #9.16
+---
+Chain | Description
+Q | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb R #9.17
+---
+Chain | Description
+R | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb S #9.18
+---
+Chain | Description
+S | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb T #9.19
+---
+Chain | Description
+T | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb U #9.20
+---
+Chain | Description
+U | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb V #9.21
+---
+Chain | Description
+V | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb W #9.22
+---
+Chain | Description
+W | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb X #9.23
+---
+Chain | Description
+X | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb Y #9.24
+---
+Chain | Description
+Y | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb Z #9.25
+---
+Chain | Description
+Z | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb a #9.26
+---
+Chain | Description
+a | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb b #9.27
+---
+Chain | Description
+b | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb c #9.28
+---
+Chain | Description
+c | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb d #9.29
+---
+Chain | Description
+d | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb e #9.30
+---
+Chain | Description
+e | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb f #9.31
+---
+Chain | Description
+f | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb g #9.32
+---
+Chain | Description
+g | No description available
+Chain information for FlaB1_core_monox33_Asym_map_related.pdb h #9.33
+---
+Chain | Description
+h | No description available
+> hide #!9 models
+> show #!9 models
+> hide #!9 models
+> show #!9 models
+> hide #!9 models
+> show #!9 models
+> select #9.4/E:202
+atoms, 6 bonds, 1 residue, 1 model selected
+> select add #9.7/H:195
+atoms, 10 bonds, 2 residues, 2 models selected
+> hide #!9 models
+> show #!9 models
+> hide #!9 models
+> show #!9 models
+> select add #9.3/D:195
+atoms, 14 bonds, 3 residues, 3 models selected
+> select add #9.6/G:195
+atoms, 18 bonds, 4 residues, 4 models selected
+> select add #9.32/g:202
+atoms, 24 bonds, 5 residues, 5 models selected
+> select add #9.1/B:198
+atoms, 34 bonds, 6 residues, 6 models selected
+> hide #!9 models
+> show #!9 models
+> hide #!9 models
+> show #!9 models
+> select add #9.30/e:202
+atoms, 40 bonds, 7 residues, 7 models selected
+> select add #9.28/c:198
+atoms, 50 bonds, 8 residues, 8 models selected
+> hide #!9 models
+> show #!9 models
+> select add #9.26/a:199
+atoms, 55 bonds, 9 residues, 9 models selected
+> select add #9.27/b:195
+atoms, 59 bonds, 10 residues, 10 models selected
+> select add #9.24/Y:198
+atoms, 69 bonds, 11 residues, 11 models selected
+> select add #9.22/W:195
+atoms, 73 bonds, 12 residues, 12 models selected
+> hide #!9 models
+> show #!9 models
+> hide #!9 models
+> show #!9 models
+> hide #!9 models
+> show #!9 models
+> select add #9.20/U:202
+atoms, 79 bonds, 13 residues, 13 models selected
+> select add #9.21/V:199
+atoms, 84 bonds, 14 residues, 14 models selected
+> hide #!9 models
+> show #!9 models
+> hide #!9 models
+> show #!9 models
+> select add #9.18/S:198
+atoms, 94 bonds, 15 residues, 15 models selected
+> select add #9.16/Q:198
+atoms, 104 bonds, 16 residues, 16 models selected
+> hide #!9 models
+> show #!9 models
+> hide #!9 models
+> show #!9 models
+> select add #9.14/O:205
+atoms, 112 bonds, 17 residues, 17 models selected
+> select add #9.15/P:199
+atoms, 117 bonds, 18 residues, 18 models selected
+> hide #!9 models
+> show #!9 models
+> select add #9.11/L:199
+atoms, 122 bonds, 19 residues, 19 models selected
+> select add #9.12/M:195
+atoms, 126 bonds, 20 residues, 20 models selected
+> hide #!9 models
+> show #!9 models
+> select add #9.9/J:202
+atoms, 132 bonds, 21 residues, 21 models selected
+> select add #9.33/h:198
+atoms, 142 bonds, 22 residues, 22 models selected
+> select add #9.2
+atoms, 2337 bonds, 308 residues, 23 models selected
+> select add #9.5
+atoms, 4532 bonds, 594 residues, 24 models selected
+> select add #9.8
+atoms, 6727 bonds, 880 residues, 25 models selected
+> select add #9.10
+atoms, 8922 bonds, 1166 residues, 26 models selected
+> select add #9.13
+atoms, 11117 bonds, 1452 residues, 27 models selected
+> select add #9.17
+atoms, 13312 bonds, 1738 residues, 28 models selected
+> select add #9.19
+atoms, 15507 bonds, 2024 residues, 29 models selected
+> select add #9.23
+atoms, 17702 bonds, 2310 residues, 30 models selected
+> select add #9.25
+atoms, 19897 bonds, 2596 residues, 31 models selected
+> select add #9.29
+atoms, 22092 bonds, 2882 residues, 32 models selected
+> select add #9.31
+atoms, 24287 bonds, 3168 residues, 33 models selected
+> select add #9.1
+atoms, 26472 bonds, 3453 residues, 33 models selected
+> select subtract #9.1
+atoms, 24277 bonds, 3167 residues, 32 models selected
+> select add #9.3
+atoms, 26468 bonds, 3452 residues, 32 models selected
+> select subtract #9.3
+atoms, 24273 bonds, 3166 residues, 31 models selected
+> select add #9.4
+atoms, 26462 bonds, 3451 residues, 31 models selected
+> select subtract #9.4
+atoms, 24267 bonds, 3165 residues, 30 models selected
+> select add #9.6
+atoms, 26458 bonds, 3450 residues, 30 models selected
+> select subtract #9.6
+atoms, 24263 bonds, 3164 residues, 29 models selected
+> select add #9.7
+atoms, 26454 bonds, 3449 residues, 29 models selected
+> select subtract #9.7
+atoms, 24259 bonds, 3163 residues, 28 models selected
+> select add #9.9
+atoms, 26448 bonds, 3448 residues, 28 models selected
+> select subtract #9.9
+atoms, 24253 bonds, 3162 residues, 27 models selected
+> select add #9.11
+atoms, 26443 bonds, 3447 residues, 27 models selected
+> select subtract #9.11
+atoms, 24248 bonds, 3161 residues, 26 models selected
+> select add #9.12
+atoms, 26439 bonds, 3446 residues, 26 models selected
+> select subtract #9.12
+atoms, 24244 bonds, 3160 residues, 25 models selected
+> select add #9.14
+atoms, 26431 bonds, 3445 residues, 25 models selected
+> select subtract #9.14
+atoms, 24236 bonds, 3159 residues, 24 models selected
+> select add #9.15
+atoms, 26426 bonds, 3444 residues, 24 models selected
+> select subtract #9.15
+atoms, 24231 bonds, 3158 residues, 23 models selected
+> select add #9.16
+atoms, 26416 bonds, 3443 residues, 23 models selected
+> select subtract #9.16
+atoms, 24221 bonds, 3157 residues, 22 models selected
+> select add #9.18
+atoms, 26406 bonds, 3442 residues, 22 models selected
+> select subtract #9.18
+atoms, 24211 bonds, 3156 residues, 21 models selected
+> select add #9.20
+atoms, 26400 bonds, 3441 residues, 21 models selected
+> select subtract #9.20
+atoms, 24205 bonds, 3155 residues, 20 models selected
+> select add #9.21
+atoms, 26395 bonds, 3440 residues, 20 models selected
+> select subtract #9.21
+atoms, 24200 bonds, 3154 residues, 19 models selected
+> select add #9.22
+atoms, 26391 bonds, 3439 residues, 19 models selected
+> select subtract #9.22
+atoms, 24196 bonds, 3153 residues, 18 models selected
+> select add #9.24
+atoms, 26381 bonds, 3438 residues, 18 models selected
+> select subtract #9.24
+atoms, 24186 bonds, 3152 residues, 17 models selected
+> select add #9.26
+atoms, 26376 bonds, 3437 residues, 17 models selected
+> select subtract #9.26
+atoms, 24181 bonds, 3151 residues, 16 models selected
+> select add #9.27
+atoms, 26372 bonds, 3436 residues, 16 models selected
+> select subtract #9.27
+atoms, 24177 bonds, 3150 residues, 15 models selected
+> select add #9.28
+atoms, 26362 bonds, 3435 residues, 15 models selected
+> select subtract #9.28
+atoms, 24167 bonds, 3149 residues, 14 models selected
+> select add #9.30
+atoms, 26356 bonds, 3434 residues, 14 models selected
+> select subtract #9.30
+atoms, 24161 bonds, 3148 residues, 13 models selected
+> select add #9.32
+atoms, 26350 bonds, 3433 residues, 13 models selected
+> select subtract #9.32
+atoms, 24155 bonds, 3147 residues, 12 models selected
+> select add #9.33
+atoms, 26340 bonds, 3432 residues, 12 models selected
+> select subtract #9.33
+atoms, 24145 bonds, 3146 residues, 11 models selected
+> delete atoms sel
+> delete bonds sel
+> hide #!9 models
+> show #!9 models
+> hide #!9 models
+> show #!9 models
+> hide #!5 models
+> show #!5 models
+> hide #!5 models
+> show #!5 models
+> hide #!5 models
+> show #!5 models
+> hide #!9 models
+> show #!9 models
+> show #!7 models
+> rename #5 id #8
+> show #!6 models
+> combine #7-9
+Remapping chain ID 'C' in FlaB1_core_monox33_real_refine.pdb C #8.2 to 'G'
+Remapping chain ID 'D' in FlaB1_core_monox33_real_refine.pdb D #8.3 to 'H'
+Remapping chain ID 'E' in FlaB1_core_monox33_real_refine.pdb E #8.4 to 'M'
+Remapping chain ID 'F' in FlaB1_core_monox33_real_refine.pdb F #8.5 to 'P'
+Remapping chain ID 'G' in FlaB1_core_monox33_real_refine.pdb G #8.6 to 'Q'
+Remapping chain ID 'H' in FlaB1_core_monox33_real_refine.pdb H #8.7 to 'V'
+Remapping chain ID 'I' in FlaB1_core_monox33_real_refine.pdb I #8.8 to 'W'
+Remapping chain ID 'J' in FlaB1_core_monox33_real_refine.pdb J #8.9 to 'b'
+Remapping chain ID 'K' in FlaB1_core_monox33_real_refine.pdb K #8.10 to 'c'
+Remapping chain ID 'L' in FlaB1_core_monox33_real_refine.pdb L #8.11 to 'h'
+Remapping chain ID 'M' in FlaB1_core_monox33_real_refine.pdb M #8.12 to 'i'
+Remapping chain ID 'N' in FlaB1_core_monox33_real_refine.pdb N #8.13 to 'j'
+Remapping chain ID 'O' in FlaB1_core_monox33_real_refine.pdb O #8.14 to 'k'
+Remapping chain ID 'P' in FlaB1_core_monox33_real_refine.pdb P #8.15 to 'l'
+Remapping chain ID 'Q' in FlaB1_core_monox33_real_refine.pdb Q #8.16 to 'm'
+Remapping chain ID 'R' in FlaB1_core_monox33_real_refine.pdb R #8.17 to 'n'
+Remapping chain ID 'S' in FlaB1_core_monox33_real_refine.pdb S #8.18 to 'o'
+Remapping chain ID 'T' in FlaB1_core_monox33_real_refine.pdb T #8.19 to 'p'
+Remapping chain ID 'U' in FlaB1_core_monox33_real_refine.pdb U #8.20 to 'q'
+Remapping chain ID 'V' in FlaB1_core_monox33_real_refine.pdb V #8.21 to 'r'
+Remapping chain ID 'W' in FlaB1_core_monox33_real_refine.pdb W #8.22 to 's'
+Remapping chain ID 'X' in FlaB1_core_monox33_real_refine.pdb X #8.23 to 't'
+Remapping chain ID 'Y' in FlaB1_core_monox33_real_refine.pdb Y #8.24 to 'u'
+Remapping chain ID 'Z' in FlaB1_core_monox33_real_refine.pdb Z #8.25 to 'v'
+Remapping chain ID 'a' in FlaB1_core_monox33_real_refine.pdb a #8.26 to 'w'
+Remapping chain ID 'b' in FlaB1_core_monox33_real_refine.pdb b #8.27 to 'x'
+Remapping chain ID 'c' in FlaB1_core_monox33_real_refine.pdb c #8.28 to 'y'
+Remapping chain ID 'd' in FlaB1_core_monox33_real_refine.pdb d #8.29 to 'z'
+Remapping chain ID 'e' in FlaB1_core_monox33_real_refine.pdb e #8.30 to '1'
+Remapping chain ID 'f' in FlaB1_core_monox33_real_refine.pdb f #8.31 to '2'
+Remapping chain ID 'g' in FlaB1_core_monox33_real_refine.pdb g #8.32 to '3'
+Remapping chain ID 'h' in FlaB1_core_monox33_real_refine.pdb h #8.33 to '4'
+Remapping chain ID 'B' in FlaB1_core_monox33_Asym_map_related.pdb B #9.1 to
+'5'
+Remapping chain ID 'D' in FlaB1_core_monox33_Asym_map_related.pdb D #9.3 to
+'6'
+Remapping chain ID 'E' in FlaB1_core_monox33_Asym_map_related.pdb E #9.4 to
+'7'
+Remapping chain ID 'G' in FlaB1_core_monox33_Asym_map_related.pdb G #9.6 to
+'8'
+Remapping chain ID 'H' in FlaB1_core_monox33_Asym_map_related.pdb H #9.7 to
+'9'
+Remapping chain ID 'J' in FlaB1_core_monox33_Asym_map_related.pdb J #9.9 to
+'0'
+Remapping chain ID 'L' in FlaB1_core_monox33_Asym_map_related.pdb L #9.11 to
+'AA'
+Remapping chain ID 'M' in FlaB1_core_monox33_Asym_map_related.pdb M #9.12 to
+'AB'
+Remapping chain ID 'O' in FlaB1_core_monox33_Asym_map_related.pdb O #9.14 to
+'AC'
+Remapping chain ID 'P' in FlaB1_core_monox33_Asym_map_related.pdb P #9.15 to
+'AD'
+Remapping chain ID 'Q' in FlaB1_core_monox33_Asym_map_related.pdb Q #9.16 to
+'AE'
+Remapping chain ID 'S' in FlaB1_core_monox33_Asym_map_related.pdb S #9.18 to
+'AF'
+Remapping chain ID 'U' in FlaB1_core_monox33_Asym_map_related.pdb U #9.20 to
+'AG'
+Remapping chain ID 'V' in FlaB1_core_monox33_Asym_map_related.pdb V #9.21 to
+'AH'
+Remapping chain ID 'W' in FlaB1_core_monox33_Asym_map_related.pdb W #9.22 to
+'AI'
+Remapping chain ID 'Y' in FlaB1_core_monox33_Asym_map_related.pdb Y #9.24 to
+'AJ'
+Remapping chain ID 'a' in FlaB1_core_monox33_Asym_map_related.pdb a #9.26 to
+'AK'
+Remapping chain ID 'b' in FlaB1_core_monox33_Asym_map_related.pdb b #9.27 to
+'AL'
+Remapping chain ID 'c' in FlaB1_core_monox33_Asym_map_related.pdb c #9.28 to
+'AM'
+Remapping chain ID 'e' in FlaB1_core_monox33_Asym_map_related.pdb e #9.30 to
+'AN'
+Remapping chain ID 'g' in FlaB1_core_monox33_Asym_map_related.pdb g #9.32 to
+'AO'
+Remapping chain ID 'h' in FlaB1_core_monox33_Asym_map_related.pdb h #9.33 to
+'AP'
+> rename #5 FlaB1_core_long_Asym_map_related.pdb
+> rename #7 id #50
+> rename #8 id #51
+> rename #9 id #52
+> rename #6 id #100
+> show #!14 models
+> hide #5 models
+> hide #!14 models
+> hide #!50 models
+> hide #!51 models
+> hide #!52 models
+> show #!52 models
+> hide #!100 models
+> hide #!52 models
+> show #!1 models
+> show #5 models
+> show #!100 models
+> hide #!100 models
+> close #50-52
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/FlaB1_core_long_Asym_map_related.pdb
+> models #5
+> fitmap #5 inMap #1
+Fit molecule FlaB1_core_long_Asym_map_related.pdb (#5) to map
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc (#1) using 168014 atoms
+average map value = 0.2885, steps = 48
+shifted from previous position = 0.139
+rotated from previous position = 0.273 degrees
+atoms outside contour = 98391, contour level = 0.21455
+Position of FlaB1_core_long_Asym_map_related.pdb (#5) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc (#1) coordinates:
+Matrix rotation and translation
+.99729210 0.07276207 -0.01068409 -12.22365137
+-0.07284267 0.99731630 -0.00735809 15.09549785
+.01012002 0.00811643 0.99991585 101.60823505
+Axis 0.10463160 -0.14066784 -0.98451246
+Axis point 6.76654419 19.50459491 0.00000000
+Rotation angle (degrees) 4.24075836
+Shift along axis -103.43700489
+> fitmap #5 inMap #1
+Fit molecule FlaB1_core_long_Asym_map_related.pdb (#5) to map
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc (#1) using 168014 atoms
+average map value = 0.2885, steps = 36
+shifted from previous position = 0.00589
+rotated from previous position = 0.00451 degrees
+atoms outside contour = 98403, contour level = 0.21455
+Position of FlaB1_core_long_Asym_map_related.pdb (#5) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc (#1) coordinates:
+Matrix rotation and translation
+.99729160 0.07276011 -0.01074423 -12.22132135
+-0.07284068 0.99731682 -0.00730742 15.09312058
+.01018372 0.00807024 0.99991558 101.60737245
+Axis 0.10397425 -0.14150185 -0.98446259
+Axis point 5.52201206 20.36409667 0.00000000
+Rotation angle (degrees) 4.24085855
+Shift along axis -103.43506377
+> fitmap #5 inMap #1
+Fit molecule FlaB1_core_long_Asym_map_related.pdb (#5) to map
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc (#1) using 168014 atoms
+average map value = 0.2885, steps = 36
+shifted from previous position = 0.00077
+rotated from previous position = 0.000115 degrees
+atoms outside contour = 98403, contour level = 0.21455
+Position of FlaB1_core_long_Asym_map_related.pdb (#5) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc (#1) coordinates:
+Matrix rotation and translation
+.99729160 0.07276028 -0.01074268 -12.22077062
+-0.07284085 0.99731680 -0.00730868 15.09310244
+.01018207 0.00807139 0.99991559 101.60737307
+Axis 0.10399045 -0.14148009 -0.98446400
+Axis point 5.55382112 20.33469527 0.00000000
+Rotation angle (degrees) 4.24086220
+Shift along axis -103.43501802
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/FlaB1_core_long_Asym_map_related.pdb
+> models #5
+> rename #14 id #50
+> rename #15 id #51
+> rename #16 id #52
+> rename #17 id #53
+> rename #18 id #54
+> surface dust #1 size 10.7
+> volume zone #1 nearAtoms #5 range 5 invert false newMap true minimalBounds
+> true bondPointSpacing 2
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone as #6, grid size
+,142,360, pixel 1.07, shown at step 1, values float32
+> surface dust #6 size 10.7
+> show #!29 models
+> hide #!29 models
+> hide #5 models
+> hide #!6 models
+> show #!6 models
+> hide #!6 models
+> show #!1 models
+> show #3 models
+> show #!2 models
+> hide #!1 models
+> show #!4 models
+> hide #!4 models
+> hide #!2 models
+> hide #3 models
+> show #!1 models
+> show #!29 models
+> color #1 #fff6b6ff models
+> show #29.1 models
+> show #29.2 models
+> show #29.4 models
+> show #29.5 models
+> show #29.6 models
+> show #29.7 models
+> show #29.8 models
+> show #29.10 models
+> show #29.11 models
+> show #29.13 models
+> show #29.15 models
+> show #29.16 models
+> show #29.17 models
+> show #29.19-26 target m
+> show #29.28-29,31,33#!29.30,32 target m
+> show #!2 models
+> fitmap #1 inMap #2
+Fit map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc in map
+cryosparc_P1_J2054_003_volume_map_sharp.mrc using 1071722 points
+correlation = 0.8533, correlation about mean = 0.3716, overlap = 6.226e+04
+steps = 44, shift = 0.0143, angle = 0.00675 degrees
+Position of J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc (#1) relative to
+cryosparc_P1_J2054_003_volume_map_sharp.mrc (#2) coordinates:
+Matrix rotation and translation
+.99960097 -0.02512280 0.01291274 1.71650824
+.02498124 0.99962729 0.01101016 -5.95417463
+-0.01318453 -0.01068319 0.99985601 3.93815070
+Axis -0.35847791 0.43125176 0.82795864
+Axis point 240.66343486 65.60876593 0.00000000
+Rotation angle (degrees) 1.73389594
+Shift along axis 0.07754731
+> hide #!2 models
+> select add #29
+atoms, 88077 bonds, 10824 residues, 34 models selected
+> ui mousemode right "translate selected models"
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #29,0.99613,-0.086759,0.014154,14.52,0.086713,0.99623,0.0038109,-16.747,-0.014431,-0.0025689,0.99989,3.2962
+> ui mousemode right "translate selected models"
+> view matrix models
+> #29,0.99613,-0.086759,0.014154,13.8,0.086713,0.99623,0.0038109,-19.881,-0.014431,-0.0025689,0.99989,-1.9449
+> combine #29
+> rename #34 Asym_part_1
+> rename #35 Asym_part_2
+> rename #36 Asym_part_3
+> rename #37 Asym_part_4
+> rename #34 id #55
+> rename #35 id #56
+> rename #36 id #57
+> rename #37 id #58
+> rename #29 id #59
+> select subtract #59
+models selected
+> hide #!59 models
+> hide #7 models
+> show #7 models
+> select add #7
+atoms, 88077 bonds, 10824 residues, 1 model selected
+> view matrix models
+> #7,0.99613,-0.086759,0.014154,15.399,0.086713,0.99623,0.0038109,-17.284,-0.014431,-0.0025689,0.99989,-6.8556
+> fitmap #7 inMap #1
+Fit molecule combination (#7) to map
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc (#1) using 86328 atoms
+average map value = 0.09462, steps = 108
+shifted from previous position = 4.16
+rotated from previous position = 3.01 degrees
+atoms outside contour = 73237, contour level = 0.21455
+Position of combination (#7) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc (#1) coordinates:
+Matrix rotation and translation
+.99393330 -0.10908529 -0.01403561 24.50277736
+.10921820 0.99397635 0.00907727 -21.60512789
+.01296087 -0.01055514 0.99986029 -13.35697843
+Axis -0.08889849 -0.12224406 0.98851072
+Axis point 223.20745786 201.82388960 0.00000000
+Rotation angle (degrees) 6.33954996
+Shift along axis -12.74067776
+> fitmap #7 inMap #1
+Fit molecule combination (#7) to map
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc (#1) using 86328 atoms
+average map value = 0.09462, steps = 60
+shifted from previous position = 0.00805
+rotated from previous position = 0.0013 degrees
+atoms outside contour = 73248, contour level = 0.21455
+Position of combination (#7) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc (#1) coordinates:
+Matrix rotation and translation
+.99393226 -0.10909212 -0.01405638 24.50495381
+.10922532 0.99397552 0.00908295 -21.61467706
+.01298082 -0.01056315 0.99985995 -13.36029768
+Axis -0.08895244 -0.12241739 0.98848442
+Axis point 223.30123626 201.81793730 0.00000000
+Rotation angle (degrees) 6.34012617
+Shift along axis -12.74020928
+> fitmap #7 inMap #1
+Fit molecule combination (#7) to map
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc (#1) using 86328 atoms
+average map value = 0.09461, steps = 44
+shifted from previous position = 0.018
+rotated from previous position = 0.00724 degrees
+atoms outside contour = 73238, contour level = 0.21455
+Position of combination (#7) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc (#1) coordinates:
+Matrix rotation and translation
+.99394140 -0.10901039 -0.01404355 24.48297559
+.10914470 0.99398349 0.00917908 -21.60427539
+.01295844 -0.01065624 0.99985925 -13.32807100
+Axis -0.08986931 -0.12233986 0.98841108
+Axis point 223.32925176 201.68539838 0.00000000
+Rotation angle (degrees) 6.33586414
+Shift along axis -12.73081704
+> hide #!1 models
+> show #!1 models
+> volume #1 level 0.2944
+> volume #1 level 0.1
+> volume #1 level 0.5
+> hide #7 models
+> show #7 models
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #7,0.5445,-0.83454,-0.084056,262.37,-0.838,-0.54554,-0.012025,459.44,-0.035821,0.076986,-0.99639,369.85
+> view matrix models
+> #7,0.54231,-0.83958,-0.031627,253.48,-0.84008,-0.5413,-0.035503,463.63,0.012688,0.045823,-0.99887,366.94
+> ui mousemode right "translate selected models"
+> view matrix models
+> #7,0.54231,-0.83958,-0.031627,254.38,-0.84008,-0.5413,-0.035503,463.79,0.012688,0.045823,-0.99887,357.9
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #7,0.72259,-0.69011,-0.040214,192.83,-0.69068,-0.71832,-0.083514,478.2,0.028748,0.088121,-0.99569,346.12
+> view matrix models
+> #7,0.97961,-0.16884,-0.10887,57.349,-0.18003,-0.97828,-0.10276,433.22,-0.089151,0.12027,-0.98873,361.33
+> fitmap #7 inMap #1
+Fit molecule combination (#7) to map
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc (#1) using 86328 atoms
+average map value = 0.2469, steps = 144
+shifted from previous position = 2.82
+rotated from previous position = 9.24 degrees
+atoms outside contour = 70723, contour level = 0.5
+Position of combination (#7) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc (#1) coordinates:
+Matrix rotation and translation
+.96130148 -0.27517333 0.01338204 57.30741243
+-0.27514505 -0.96139462 -0.00394614 430.25992424
+.01395129 0.00011143 -0.99990266 365.66743829
+Axis 0.99027821 -0.13892955 0.00690274
+Axis point 0.00000000 218.96076353 182.85648400
+Rotation angle (degrees) 179.88261820
+Shift along axis -0.50142984
+> volume #1 level 0.3
+> select subtract #7
+Nothing selected
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/FlaA1_sheath_monox33_Asym_map_related.pdb
+> models #7
+> show #3 models
+> hide #!1 models
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/FlaA1_sheath_monox33_Asym_map_related.pdb
+> models #7
+> rename #7 FlaA1_sheath_sym_part
+> split #7
+Split FlaA1_sheath_sym_part (#7) into 33 models
+Chain information for FlaA1_sheath_sym_part A #7.1
+---
+Chain | Description
+A | No description available
+Chain information for FlaA1_sheath_sym_part B #7.2
+---
+Chain | Description
+B | No description available
+Chain information for FlaA1_sheath_sym_part C #7.3
+---
+Chain | Description
+C | No description available
+Chain information for FlaA1_sheath_sym_part D #7.4
+---
+Chain | Description
+D | No description available
+Chain information for FlaA1_sheath_sym_part E #7.5
+---
+Chain | Description
+E | No description available
+Chain information for FlaA1_sheath_sym_part F #7.6
+---
+Chain | Description
+F | No description available
+Chain information for FlaA1_sheath_sym_part G #7.7
+---
+Chain | Description
+G | No description available
+Chain information for FlaA1_sheath_sym_part H #7.8
+---
+Chain | Description
+H | No description available
+Chain information for FlaA1_sheath_sym_part I #7.9
+---
+Chain | Description
+I | No description available
+Chain information for FlaA1_sheath_sym_part J #7.10
+---
+Chain | Description
+J | No description available
+Chain information for FlaA1_sheath_sym_part K #7.11
+---
+Chain | Description
+K | No description available
+Chain information for FlaA1_sheath_sym_part L #7.12
+---
+Chain | Description
+L | No description available
+Chain information for FlaA1_sheath_sym_part M #7.13
+---
+Chain | Description
+M | No description available
+Chain information for FlaA1_sheath_sym_part N #7.14
+---
+Chain | Description
+N | No description available
+Chain information for FlaA1_sheath_sym_part O #7.15
+---
+Chain | Description
+O | No description available
+Chain information for FlaA1_sheath_sym_part P #7.16
+---
+Chain | Description
+P | No description available
+Chain information for FlaA1_sheath_sym_part Q #7.17
+---
+Chain | Description
+Q | No description available
+Chain information for FlaA1_sheath_sym_part R #7.18
+---
+Chain | Description
+R | No description available
+Chain information for FlaA1_sheath_sym_part S #7.19
+---
+Chain | Description
+S | No description available
+Chain information for FlaA1_sheath_sym_part T #7.20
+---
+Chain | Description
+T | No description available
+Chain information for FlaA1_sheath_sym_part U #7.21
+---
+Chain | Description
+U | No description available
+Chain information for FlaA1_sheath_sym_part V #7.22
+---
+Chain | Description
+V | No description available
+Chain information for FlaA1_sheath_sym_part W #7.23
+---
+Chain | Description
+W | No description available
+Chain information for FlaA1_sheath_sym_part X #7.24
+---
+Chain | Description
+X | No description available
+Chain information for FlaA1_sheath_sym_part Y #7.25
+---
+Chain | Description
+Y | No description available
+Chain information for FlaA1_sheath_sym_part Z #7.26
+---
+Chain | Description
+Z | No description available
+Chain information for FlaA1_sheath_sym_part a #7.27
+---
+Chain | Description
+a | No description available
+Chain information for FlaA1_sheath_sym_part b #7.28
+---
+Chain | Description
+b | No description available
+Chain information for FlaA1_sheath_sym_part c #7.29
+---
+Chain | Description
+c | No description available
+Chain information for FlaA1_sheath_sym_part d #7.30
+---
+Chain | Description
+d | No description available
+Chain information for FlaA1_sheath_sym_part e #7.31
+---
+Chain | Description
+e | No description available
+Chain information for FlaA1_sheath_sym_part f #7.32
+---
+Chain | Description
+f | No description available
+Chain information for FlaA1_sheath_sym_part g #7.33
+---
+Chain | Description
+g | No description available
+> ui mousemode right select
+> select #3/G:160
+atoms, 12 bonds, 1 residue, 1 model selected
+> select clear
+> select #7.13/M:308
+atoms, 6 bonds, 1 residue, 1 model selected
+> select add #7.14/N:304
+atoms, 14 bonds, 2 residues, 2 models selected
+> select add #7.16/P:330
+atoms, 22 bonds, 3 residues, 3 models selected
+> select add #7.15/O:330
+atoms, 30 bonds, 4 residues, 4 models selected
+> select add #7.6/F:327
+atoms, 37 bonds, 5 residues, 5 models selected
+> select add #7.12/L:326
+atoms, 48 bonds, 6 residues, 6 models selected
+> select clear
+> select #7.13/M:26
+atoms, 7 bonds, 1 residue, 1 model selected
+> select add #7.14/N:25
+atoms, 14 bonds, 2 residues, 2 models selected
+> select add #7.16/P:25
+atoms, 21 bonds, 3 residues, 3 models selected
+> select add #7.15/O:25
+atoms, 28 bonds, 4 residues, 4 models selected
+> select add #7.6/F:26
+atoms, 35 bonds, 5 residues, 5 models selected
+> select add #7.12/L:26
+atoms, 42 bonds, 6 residues, 6 models selected
+> select add #7.10/J:26
+atoms, 49 bonds, 7 residues, 7 models selected
+> select add #7.9/I:27
+atoms, 56 bonds, 8 residues, 8 models selected
+> select add #7.11/K:27
+atoms, 63 bonds, 9 residues, 9 models selected
+> select add #7.6
+atoms, 2725 bonds, 336 residues, 9 models selected
+> select add #7.9
+atoms, 5387 bonds, 663 residues, 9 models selected
+> select add #7.10
+atoms, 8049 bonds, 990 residues, 9 models selected
+> select add #7.11
+atoms, 10711 bonds, 1317 residues, 9 models selected
+> select add #7.12
+atoms, 13373 bonds, 1644 residues, 9 models selected
+> select add #7.13
+atoms, 16035 bonds, 1971 residues, 9 models selected
+> select add #7.14
+atoms, 18697 bonds, 2298 residues, 9 models selected
+> select add #7.15
+atoms, 21359 bonds, 2625 residues, 9 models selected
+> select add #7.16
+atoms, 24021 bonds, 2952 residues, 9 models selected
+> delete atoms sel
+> delete bonds sel
+> hide #3 models
+> show #3 models
+> view orient
+> view
+> preset "overall look" interactive
+Using preset: Overall Look / Interactive
+Preset expands to these ChimeraX commands:
+    ~set bg
+    graphics silhouettes f
+    lighting depthCue t
+> preset "overall look" "publication 1 (silhouettes)"
+Using preset: Overall Look / Publication 1 (Silhouettes)
+> set bgColor #ffffff00
+Preset expands to these ChimeraX commands:
+    set bg white
+    graphics silhouettes t
+    lighting depthCue f
+> show #!52 models
+> hide #!52 models
+> show #!4 models
+> hide #!7 models
+> show #!7 models
+> show #!1 models
+> hide #!1 models
+> show #!2 models
+> hide #!2 models
+> show #5 models
+> hide #5 models
+> show #!6 models
+> hide #!6 models
+> volume zone #1 nearAtoms #7 range 5 invert false newMap true minimalBounds
+> true bondPointSpacing 2
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone as #8, grid size
+,203,233, pixel 1.07, shown at step 1, values float32
+> surface dust #4 size 10.7
+> surface dust #8 size 10.7
+> view orient
+> show #!6 models
+> view orient
+> volume #1 level 0.5369
+> volume #6 level 0.3
+> hide #3 models
+> hide #!8 models
+> show #!8 models
+> hide #!7 models
+> show #3 models
+> view orient
+> view
+> lighting soft
+> volume #4 level 0.1
+> volume #6 level 0.2
+> volume #6 level 0.3
+> volume #6 level 0.4
+> volume #8 level 0.4
+> volume #6 level 0.5
+> view
+> view orient
+> volume #4 level 0.2
+> volume #4 level 0.1
+> volume #4 level 0.08
+> volume #4 level 0.1
+> volume #8 level 0.3
+> volume #6 level 0.3
+> volume #6 level 0.4
+> volume #6 level 0.5
+> volume #8 level 0.25
+> hide #3 models
+> show #55 models
+> hide #55 models
+> show #55 models
+> split #55
+Split Asym_part_1 (#55) into 5 models
+Chain information for Asym_part_1 A #55.1
+---
+Chain | Description
+A | No description available
+Chain information for Asym_part_1 B #55.2
+---
+Chain | Description
+B | No description available
+Chain information for Asym_part_1 C #55.3
+---
+Chain | Description
+C | No description available
+Chain information for Asym_part_1 D #55.4
+---
+Chain | Description
+D | No description available
+Chain information for Asym_part_1 E #55.5
+---
+Chain | Description
+E | No description available
+> hide #55.1 models
+> show #55.1 models
+> ui tool show "Color Zone"
+> color zone #4 near #55.1 distance 3.48
+> color single #4
+> color zone #4 near #55.3 distance 4
+> color zone #4 near #55.3 distance 4.1
+> color zone #4 near #55.3 distance 4.2
+> color zone #4 near #55.3 distance 4.3
+> color zone #4 near #55.3 distance 4.4
+> color zone #4 near #55.3 distance 4.5
+> color zone #4 near #55.3 distance 4.6
+> color zone #4 near #55.3 distance 4.7
+> color zone #4 near #55.3 distance 4.8
+> color zone #4 near #55.3 distance 4.9
+> color zone #4 near #55.3 distance 5
+> volume splitbyzone #4
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 0 as #9.1, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 1 as #9.2, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+> surface dust #6 size 10.7
+> surface dust #8 size 10.7
+> surface dust #9.1 size 10.7
+> surface dust #9.2 size 10.7
+> hide #!9.1 models
+> show #!9.1 models
+> hide #!9 models
+> show #!4 models
+> color zone #4 near #55.1 distance 5
+> volume splitbyzone #4
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 0 as #10.1, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 1 as #10.2, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+> surface dust #6 size 10.7
+> surface dust #8 size 10.7
+> surface dust #10.1 size 10.7
+> surface dust #10.2 size 10.7
+> hide #!10 models
+> show #!4 models
+> color zone #4 near #55.2 distance 5
+> volume splitbyzone #4
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 0 as #11.1, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 1 as #11.2, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+> surface dust #6 size 10.7
+> surface dust #8 size 10.7
+> surface dust #11.1 size 10.7
+> surface dust #11.2 size 10.7
+> show #!9 models
+> show #!10 models
+> hide #!9.2 models
+> show #!9.2 models
+> hide #!9.1 models
+> hide #!10.1 models
+> hide #!11.1 models
+> color zone #4 near #55.4 distance 5
+> show #!4 models
+> volume splitbyzone #4
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 0 as #12.1, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 1 as #12.2, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+> surface dust #6 size 10.7
+> surface dust #8 size 10.7
+> surface dust #9.2 size 10.7
+> surface dust #10.2 size 10.7
+> surface dust #11.2 size 10.7
+> surface dust #12.1 size 10.7
+> surface dust #12.2 size 10.7
+> show #!4 models
+> color zone #4 near #55.5 distance 5
+> hide #!12.1 models
+> color zone #4 near #55.5 distance 5
+> volume splitbyzone #4
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 0 as #13.1, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 1 as #13.2, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+> surface dust #6 size 10.7
+> surface dust #8 size 10.7
+> surface dust #9.2 size 10.7
+> surface dust #10.2 size 10.7
+> surface dust #11.2 size 10.7
+> surface dust #12.2 size 10.7
+> surface dust #13.1 size 10.7
+> surface dust #13.2 size 10.7
+> hide #!13.1 models
+Color zone shortcut requires 1 displayed atomic model and 1 map, got 5 atomic
+models, 7 maps.
+> surface dust #6 size 10.7
+> surface dust #8 size 10.7
+> surface dust #9.2 size 10.7
+> surface dust #10.2 size 10.7
+> surface dust #11.2 size 10.7
+> surface dust #12.2 size 10.7
+> surface dust #13.2 size 10.7
+> surface dust #6 size 10.7
+> surface dust #8 size 10.7
+> surface dust #9.2 size 10.7
+> surface dust #10.2 size 10.7
+> surface dust #11.2 size 10.7
+> surface dust #12.2 size 10.7
+> surface dust #13.2 size 10.7
+> surface dust #6 size 10.7
+> surface dust #8 size 10.7
+> surface dust #9.2 size 10.7
+> surface dust #10.2 size 10.7
+> surface dust #11.2 size 10.7
+> surface dust #12.2 size 10.7
+> surface dust #13.2 size 10.7
+> surface dust #6 size 10.7
+> surface dust #8 size 10.7
+> surface dust #9.2 size 10.7
+> surface dust #10.2 size 10.7
+> surface dust #11.2 size 10.7
+> surface dust #12.2 size 10.7
+> surface dust #13.2 size 10.7
+> surface dust #6 size 10.7
+> surface dust #8 size 10.7
+> surface dust #9.2 size 10.7
+> surface dust #10.2 size 10.7
+> surface dust #11.2 size 10.7
+> surface dust #12.2 size 10.7
+> surface dust #13.2 size 10.7
+> surface dust #6 size 10.7
+> surface dust #8 size 10.7
+> surface dust #9.2 size 10.7
+> surface dust #10.2 size 10.7
+> surface dust #11.2 size 10.7
+> surface dust #12.2 size 10.7
+> surface dust #13.2 size 10.7
+> hide #!55 models
+> volume #8 level 0.2
+> view orient
+> view
+> view orient
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/1-Map_top_view.png
+> width 1658 height 1210 supersample 3 transparentBackground true
+> color #6 #febe0eff models
+> color #6 #fdd900ff models
+> color #6 #fff6b6ff models
+> color #6 #feff46ff models
+> color #6 #fff6b6ff models
+> color #6 #fff49aff models
+> color #6 #ffe494ff models
+> color #6 #ffdb8eff models
+> color #8 #80e388ff models
+> color #8 #a9fab5ff models
+> color #8 #3587b7ff models
+> color #8 #a9fab5ff models
+> lighting soft
+> lighting simple
+> lighting soft
+> lighting full
+> lighting shadows false
+> lighting soft
+> lighting simple
+> lighting soft
+> graphics silhouettes false
+> graphics silhouettes true
+> lighting full
+> volume #!6,8#!9.2#!10.2#!11.2#!12.2#!13.2 style surface
+> volume #!6,8#!9.2#!10.2#!11.2#!12.2#!13.2 region all imageMode "full region"
+> volume unzone #!6,8#!9.2#!10.2#!11.2#!12.2#!13.2
+> mousemode rightMode "crop volume"
+> volume #!6,8#!9.2#!10.2#!11.2#!12.2#!13.2 region all imageMode "full region"
+> volume unzone #!6,8#!9.2#!10.2#!11.2#!12.2#!13.2
+> mousemode rightMode "crop volume"
+> volume #!6,8#!9.2#!10.2#!11.2#!12.2#!13.2 style surface
+> volume show
+> volume hide
+> show #!1 models
+> hide #!1 models
+> show #!4 models
+> hide #!4 models
+> show #!6 models
+> show #!7 models
+> hide #!7 models
+> show #!4 models
+> hide #!4 models
+> show #!9.2 models
+> show #!10.2 models
+> show #!11.2 models
+> show #!12.2 models
+> show #!13.2 models
+> surface dust #6 size 10.7
+> surface dust #9.2 size 10.7
+> surface dust #10.2 size 10.7
+> surface dust #11.2 size 10.7
+> surface dust #12.2 size 10.7
+> surface dust #13.2 size 10.7
+> show #!7 models
+> hide #!7 models
+> show #!8 models
+> lighting soft
+> surface dust #6 size 10.7
+> surface dust #8 size 10.7
+> surface dust #9.2 size 10.7
+> surface dust #10.2 size 10.7
+> surface dust #11.2 size 10.7
+> surface dust #12.2 size 10.7
+> surface dust #13.2 size 10.7
+> lighting simple
+> lighting full
+> lighting shadows false
+> lighting shadows true
+> lighting soft
+> view
+> graphics silhouettes false
+> graphics silhouettes true
+> lighting flat
+> lighting soft
+> lighting full
+> lighting flat
+> lighting full
+> lighting soft
+> set bgColor black
+> set bgColor transparent
+> lighting simple
+> lighting soft
+> preset "overall look" "publication 1 (silhouettes)"
+Using preset: Overall Look / Publication 1 (Silhouettes)
+> set bgColor #ffffff00
+Preset expands to these ChimeraX commands:
+    set bg white
+    graphics silhouettes t
+    lighting depthCue f
+> view
+> view orient
+> surface dust #6 size 10.7
+> surface dust #8 size 10.7
+> surface dust #9.2 size 10.7
+> surface dust #10.2 size 10.7
+> surface dust #11.2 size 10.7
+> surface dust #12.2 size 10.7
+> surface dust #13.2 size 10.7
+> surface dust #6 size 10.7
+> surface dust #8 size 10.7
+> surface dust #9.2 size 10.7
+> surface dust #10.2 size 10.7
+> surface dust #11.2 size 10.7
+> surface dust #12.2 size 10.7
+> surface dust #13.2 size 10.7
+> surface dust #6 size 10.7
+> surface dust #8 size 10.7
+> surface dust #9.2 size 10.7
+> surface dust #10.2 size 10.7
+> surface dust #11.2 size 10.7
+> surface dust #12.2 size 10.7
+> surface dust #13.2 size 10.7
+> color #10.2 #ff8e00ff models
+> color #10.2 #3587b7ff models
+> color #10.2 #ff8e00ff models
+> color #10.2 #00fdffff models
+> color #10.2 #0096ffff models
+> color #10.2 #0433ffff models
+> color #10.2 #9437ffff models
+> color #10.2 #00fa92ff models
+> color #10.2 #009051ff models
+> color #10.2 #009193ff models
+> color #10.2 #005493ff models
+> color #10.2 #011993ff models
+> color #10.2 #942193ff models
+> color #10.2 #ff40ffff models
+> color #10.2 #ff2f92ff models
+> color #10.2 #ff85ffff models
+> color #10.2 #d783ffff models
+> color #10.2 #ff85ffff models
+> color #10.2 #ff8ad8ff models
+> color #10.2 #ff9df4ff models
+> color #10.2 #ff7efdff models
+> color #10.2 #ff97f2ff models
+> color #12.2 #ff97f2ff models
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/1-Map_top_view.png
+> width 1658 height 1210 supersample 3 transparentBackground true
+> split #56
+Split Asym_part_2 (#56) into 5 models
+Chain information for Asym_part_2 A #56.1
+---
+Chain | Description
+A | No description available
+Chain information for Asym_part_2 B #56.2
+---
+Chain | Description
+B | No description available
+Chain information for Asym_part_2 C #56.3
+---
+Chain | Description
+C | No description available
+Chain information for Asym_part_2 D #56.4
+---
+Chain | Description
+D | No description available
+Chain information for Asym_part_2 E #56.5
+---
+Chain | Description
+E | No description available
+> split #57
+Split Asym_part_3 (#57) into 5 models
+Chain information for Asym_part_3 A #57.1
+---
+Chain | Description
+A | No description available
+Chain information for Asym_part_3 B #57.2
+---
+Chain | Description
+B | No description available
+Chain information for Asym_part_3 C #57.3
+---
+Chain | Description
+C | No description available
+Chain information for Asym_part_3 D #57.4
+---
+Chain | Description
+D | No description available
+Chain information for Asym_part_3 E #57.5
+---
+Chain | Description
+E | No description available
+> split #58
+Split Asym_part_4 (#58) into 5 models
+Chain information for Asym_part_4 A #58.1
+---
+Chain | Description
+A | No description available
+Chain information for Asym_part_4 B #58.2
+---
+Chain | Description
+B | No description available
+Chain information for Asym_part_4 C #58.3
+---
+Chain | Description
+C | No description available
+Chain information for Asym_part_4 D #58.4
+---
+Chain | Description
+D | No description available
+Chain information for Asym_part_4 E #58.5
+---
+Chain | Description
+E | No description available
+> close #9.1
+> close #10.1
+> close #11.1
+> close #12.1
+> close #13.1
+> color #50 #ff97f2ff
+> color #53 #ff97f2ff
+> color #56.1 #ff97f2ff
+> color #56.4 #ff97f2ff
+> color #57.1 #ff97f2ff
+> color #57.4 #ff97f2ff
+> color #58.1 #ff97f2ff
+> color #58.4 #ff97f2ff
+> show #!59 models
+> hide #!59 models
+> show #!4 models
+> color zone #4 near #56.1 distance 5
+> volume splitbyzone #4
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 0 as #14.1, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 1 as #14.2, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+> color zone #4 near #56.2 distance 5
+> hide #!9 models
+> show #!9 models
+> hide #!9 models
+> show #!9 models
+> show #!4 models
+> hide #!4 models
+> hide #!8 models
+> show #!4 models
+> hide #!9 models
+> hide #!10 models
+> hide #!11 models
+> hide #!12 models
+> hide #!13 models
+> hide #!14 models
+> show #!14 models
+> hide #!14 models
+> close #14.1
+> volume splitbyzone #4
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 0 as #15.1, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 1 as #15.2, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+> close #15.1
+> hide #!15 models
+> show #!4 models
+> color zone #4 near #56.3 distance 5
+> volume splitbyzone #4
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 0 as #16.1, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 1 as #16.2, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+> close #16.1
+> hide #!16 models
+> color zone #4 near #56.4 distance 5
+> volume splitbyzone #4
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 0 as #17.1, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 1 as #17.2, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+> close #17.1
+> hide #!17 models
+> color zone #4 near #56.5 distance 5
+> volume splitbyzone #4
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 0 as #18.1, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 1 as #18.2, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+> close #18.1
+> hide #!18 models
+> color zone #4 near #57.1 distance 5
+> volume splitbyzone #4
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 0 as #19.1, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 1 as #19.2, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+> color zone #4 near #57.2 distance 5
+> volume splitbyzone #4
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 0 as #20.1, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 1 as #20.2, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+> close #19.1
+> close #20.1
+> hide #!19 models
+> hide #!20 models
+> color zone #4 near #57.3 distance 5
+> volume splitbyzone #4
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 0 as #21.1, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 1 as #21.2, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+> close #21.1
+> hide #!21 models
+> color zone #4 near #57.4 distance 5
+> volume splitbyzone #4
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 0 as #22.1, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 1 as #22.2, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+> close #22.1
+> hide #!22 models
+> color zone #4 near #57.5 distance 5
+> volume splitbyzone #4
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 0 as #23.1, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 1 as #23.2, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+> close #23.1
+> hide #!23 models
+> color zone #4 near #58.1 distance 5
+> volume splitbyzone #4
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 0 as #24.1, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 1 as #24.2, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+> close #24.1
+> hide #!24 models
+> color zone #4 near #58.2 distance 5
+> volume splitbyzone #4
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 0 as #25.1, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 1 as #25.2, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+> close #25.1
+> hide #!25 models
+> color zone #4 near #58.3 distance 5
+> volume splitbyzone #4
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 0 as #26.1, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 1 as #26.2, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+> hide #!26 models
+> close #26.1
+> color zone #4 near #58.4 distance 5
+> volume splitbyzone #4
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 0 as #27.1, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 1 as #27.2, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+> close #27.1
+> hide #!27 models
+> color zone #4 near #58.5 distance 5
+> volume splitbyzone #4
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 0 as #28.1, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone 1 as #28.2, grid size
+,95,226, pixel 1.07, shown at level 0.1, step 1, values float32
+> close #28.1
+> hide #!28 models
+> show #!4 models
+> hide #!4 models
+> show #!7 models
+> hide #!7 models
+> show #!8 models
+> show #!9 models
+> show #!10 models
+> show #!11 models
+> show #!12 models
+> show #!13 models
+> show #!14 models
+> show #!15 models
+> show #!16 models
+> show #!17 models
+> show #!18 models
+> show #!19 models
+> show #!20 models
+> show #!21 models
+> show #!22 models
+> show #!23 models
+> show #!24 models
+> show #!25 models
+> show #!26 models
+> show #!27 models
+> show #!28 models
+> surface dust #6 size 10.7
+> surface dust #8 size 10.7
+> surface dust #9.2 size 10.7
+> surface dust #10.2 size 10.7
+> surface dust #11.2 size 10.7
+> surface dust #12.2 size 10.7
+> surface dust #13.2 size 10.7
+> surface dust #14.2 size 10.7
+> surface dust #15.2 size 10.7
+> surface dust #16.2 size 10.7
+> surface dust #17.2 size 10.7
+> surface dust #18.2 size 10.7
+> surface dust #19.2 size 10.7
+> surface dust #20.2 size 10.7
+> surface dust #21.2 size 10.7
+> surface dust #22.2 size 10.7
+> surface dust #23.2 size 10.7
+> surface dust #24.2 size 10.7
+> surface dust #25.2 size 10.7
+> surface dust #26.2 size 10.7
+> surface dust #27.2 size 10.7
+> surface dust #28.2 size 10.7
+Color zone shortcut requires 1 displayed atomic model and 1 map, got 0 atomic
+models, 22 maps.
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/1-Map_side_view.png
+> width 1658 height 1210 supersample 3 transparentBackground true
+> rename #9.2 id #9.1
+> rename #10.2 id #9.2
+> rename #11.2 id #9.3
+> close #10-11
+> rename #12.2 id #9.4
+> rename #13.2 id #9.5
+> close #12-13
+> hide #!9 models
+> show #!9 models
+> hide #!9 models
+> show #!9 models
+> rename #14.2 id #14.1
+> rename #15.2 id #14.2
+> rename #14 id #10
+> rename #16.2 id #10
+> rename #17.2 id #10
+> rename #18.2 id #10
+> hide #!10 models
+> show #!10 models
+> close #15-18
+> rename #19 id #11
+> rename #10.3 id #10.8
+> rename #10.2 id #10.3
+> rename #10.1 id #10.2
+> rename #10.8 id #10.1
+> rename #21.2 id #11
+> rename #20.2 id #11
+> rename #22.2 id #11
+> rename #23.2 id #11
+> hide #!11 models
+> show #!11 models
+> close #20-23
+> rename #24 id #12
+> rename #26.2 id #12
+> rename #25.2 id #12
+> rename #27.2 id #12
+> rename #28.2 id #12
+> hide #!12 models
+> show #!12 models
+> hide #!12 models
+> show #!12 models
+> close #25-28
+> hide #!9 models
+> hide #!10 models
+> hide #!11 models
+> hide #!12 models
+> show #3 models
+> hide #3 models
+> hide #!56 models
+> hide #!57 models
+> show #56-58 target m
+> hide #!56 models
+> hide #!57 models
+> hide #!58 models
+> hide #!6 models
+> hide #!8 models
+> show #!55 models
+> hide #!55 models
+> show #!55 models
+> show #!8 models
+> hide #!8 models
+> show #3 models
+> hide #3 models
+> show #5 models
+> split #5
+Split FlaB1_core_long_Asym_map_related.pdb (#5) into 77 models
+Chain information for FlaB1_core_long_Asym_map_related.pdb 0 #5.1
+---
+Chain | Description
+| No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb 1 #5.2
+---
+Chain | Description
+| No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb 2 #5.3
+---
+Chain | Description
+| No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb 3 #5.4
+---
+Chain | Description
+| No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb 4 #5.5
+---
+Chain | Description
+| No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb 5 #5.6
+---
+Chain | Description
+| No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb 6 #5.7
+---
+Chain | Description
+| No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb 7 #5.8
+---
+Chain | Description
+| No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb 8 #5.9
+---
+Chain | Description
+| No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb 9 #5.10
+---
+Chain | Description
+| No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb AA #5.11
+---
+Chain | Description
+AA | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb AB #5.12
+---
+Chain | Description
+AB | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb AC #5.13
+---
+Chain | Description
+AC | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb AD #5.14
+---
+Chain | Description
+AD | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb AE #5.15
+---
+Chain | Description
+AE | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb AF #5.16
+---
+Chain | Description
+AF | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb AG #5.17
+---
+Chain | Description
+AG | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb AH #5.18
+---
+Chain | Description
+AH | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb AI #5.19
+---
+Chain | Description
+AI | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb AJ #5.20
+---
+Chain | Description
+AJ | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb AK #5.21
+---
+Chain | Description
+AK | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb AL #5.22
+---
+Chain | Description
+AL | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb AM #5.23
+---
+Chain | Description
+AM | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb AN #5.24
+---
+Chain | Description
+AN | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb AO #5.25
+---
+Chain | Description
+AO | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb AP #5.26
+---
+Chain | Description
+AP | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb B #5.27
+---
+Chain | Description
+B | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb C #5.28
+---
+Chain | Description
+C | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb D #5.29
+---
+Chain | Description
+D | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb E #5.30
+---
+Chain | Description
+E | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb F #5.31
+---
+Chain | Description
+F | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb G #5.32
+---
+Chain | Description
+G | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb H #5.33
+---
+Chain | Description
+H | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb I #5.34
+---
+Chain | Description
+I | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb J #5.35
+---
+Chain | Description
+J | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb K #5.36
+---
+Chain | Description
+K | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb L #5.37
+---
+Chain | Description
+L | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb M #5.38
+---
+Chain | Description
+M | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb N #5.39
+---
+Chain | Description
+N | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb O #5.40
+---
+Chain | Description
+O | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb P #5.41
+---
+Chain | Description
+P | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb Q #5.42
+---
+Chain | Description
+Q | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb R #5.43
+---
+Chain | Description
+R | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb S #5.44
+---
+Chain | Description
+S | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb T #5.45
+---
+Chain | Description
+T | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb U #5.46
+---
+Chain | Description
+U | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb V #5.47
+---
+Chain | Description
+V | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb W #5.48
+---
+Chain | Description
+W | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb X #5.49
+---
+Chain | Description
+X | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb Y #5.50
+---
+Chain | Description
+Y | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb Z #5.51
+---
+Chain | Description
+Z | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb a #5.52
+---
+Chain | Description
+a | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb b #5.53
+---
+Chain | Description
+b | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb c #5.54
+---
+Chain | Description
+c | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb d #5.55
+---
+Chain | Description
+d | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb e #5.56
+---
+Chain | Description
+e | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb f #5.57
+---
+Chain | Description
+f | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb g #5.58
+---
+Chain | Description
+g | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb h #5.59
+---
+Chain | Description
+h | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb i #5.60
+---
+Chain | Description
+i | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb j #5.61
+---
+Chain | Description
+j | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb k #5.62
+---
+Chain | Description
+k | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb l #5.63
+---
+Chain | Description
+l | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb m #5.64
+---
+Chain | Description
+m | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb n #5.65
+---
+Chain | Description
+n | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb o #5.66
+---
+Chain | Description
+o | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb p #5.67
+---
+Chain | Description
+p | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb q #5.68
+---
+Chain | Description
+q | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb r #5.69
+---
+Chain | Description
+r | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb s #5.70
+---
+Chain | Description
+s | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb t #5.71
+---
+Chain | Description
+t | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb u #5.72
+---
+Chain | Description
+u | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb v #5.73
+---
+Chain | Description
+v | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb w #5.74
+---
+Chain | Description
+w | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb x #5.75
+---
+Chain | Description
+x | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb y #5.76
+---
+Chain | Description
+y | No description available
+Chain information for FlaB1_core_long_Asym_map_related.pdb z #5.77
+---
+Chain | Description
+z | No description available
+> color #55.1 #ff97f2ff
+> color #55.4 #ff97f2ff
+> show #!7 models
+> show #!56 models
+> hide #!55 models
+> hide #!5 models
+> color #7 #a9fab5ff models
+> volume #9.1 region 0,0,0,143,94,225
+> ui mousemode right select
+> select add #7.4/D:185
+atoms, 7 bonds, 1 residue, 1 model selected
+> select add #7.1/A:160
+atoms, 15 bonds, 2 residues, 2 models selected
+> select add #7.31/e:314
+atoms, 23 bonds, 3 residues, 3 models selected
+> select add #7.28/b:304
+atoms, 31 bonds, 4 residues, 4 models selected
+> select add #7.25/Y:308
+atoms, 37 bonds, 5 residues, 5 models selected
+> select add #7.22/V:308
+atoms, 43 bonds, 6 residues, 6 models selected
+> select add #7.8/H:304
+atoms, 51 bonds, 7 residues, 7 models selected
+> select add #7.19/S:308
+atoms, 57 bonds, 8 residues, 8 models selected
+> hide #7.2-3 target m
+> hide #7.5 models
+> hide #7.7 models
+> hide #7.17 models
+> hide #7.18 models
+> hide #7.20 models
+> hide #7.21 models
+> hide #7.23 models
+> hide #7.24 models
+> hide #7.26 models
+> hide #7.27 models
+> hide #7.29 models
+> hide #7.30 models
+> hide #7.32 models
+> hide #7.33 models
+> select clear
+> hide #!7 models
+> show #!7 models
+> hide #!7 models
+> show #!5 models
+> select #5.53/b:122
+atoms, 7 bonds, 1 residue, 1 model selected
+> select add #5.38/M:165
+atoms, 14 bonds, 2 residues, 2 models selected
+> select add #5.47/V:195
+atoms, 18 bonds, 3 residues, 3 models selected
+> select add #5.33/H:209
+atoms, 26 bonds, 4 residues, 4 models selected
+> select add #5.4/3:227
+atoms, 32 bonds, 5 residues, 5 models selected
+> select add #5.27/B:195
+atoms, 36 bonds, 6 residues, 6 models selected
+> select add #5.2/1:212
+atoms, 44 bonds, 7 residues, 7 models selected
+> select add #5.74/w:231
+atoms, 51 bonds, 8 residues, 8 models selected
+> select add #5.75/x:198
+atoms, 61 bonds, 9 residues, 9 models selected
+> select add #5.72/u:212
+atoms, 69 bonds, 10 residues, 10 models selected
+> select add #5.68/q:65
+atoms, 76 bonds, 11 residues, 11 models selected
+> select add #5.69/r:194
+atoms, 83 bonds, 12 residues, 12 models selected
+> select add #5.66/o:213
+atoms, 91 bonds, 13 residues, 13 models selected
+> select add #5.62/k:231
+atoms, 98 bonds, 14 residues, 14 models selected
+> hide #5.1 models
+> hide #5.3 models
+> hide #5.5-16 target m
+> hide #5.17-25 target m
+> hide #5.26 models
+> hide #5.28-32 target m
+> hide #5.34-37 target m
+> hide #5.39-46 target m
+> hide #5.48-52 target m
+> hide #5.54-61 target m
+> hide #5.63-65 target m
+> hide #5.67 models
+> hide #5.70-71 target m
+> hide #5.73 models
+> hide #5.76 models
+> hide #5.77 models
+> select clear
+> show #5.73 models
+> hide #5.73 models
+> show #5.71 models
+> hide #5.71 models
+> show #5.70 models
+> hide #5.70 models
+> show #5.67 models
+> hide #5.67 models
+> show #5.65 models
+> hide #5.65 models
+> show #5.64 models
+> hide #5.64 models
+> show #5.63 models
+> hide #5.63 models
+> show #5.61 models
+> hide #5.61 models
+> show #5.60 models
+> select #5.69/r:198
+atoms, 10 bonds, 1 residue, 1 model selected
+> hide #5.69 models
+> select #5.75/x:195
+atoms, 4 bonds, 1 residue, 1 model selected
+> hide #5.75 models
+> select #5.27/B:200
+atoms, 7 bonds, 1 residue, 1 model selected
+> hide #5.27 models
+> select #5.47/V:195
+atoms, 4 bonds, 1 residue, 1 model selected
+> hide #!5 models
+> show #!5 models
+> hide #5.47 models
+> select clear
+> hide #!56 models
+> show #!56 models
+> color #5 #ffdb8eff models
+> view orient
+> lighting soft
+> lighting simple
+> lighting soft
+> preset "overall look" "publication 1 (silhouettes)"
+Using preset: Overall Look / Publication 1 (Silhouettes)
+Preset expands to these ChimeraX commands:
+    set bg white
+    graphics silhouettes t
+    lighting depthCue f
+> lighting soft
+> lighting flat
+> lighting soft
+> lighting flat
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/1-Model_top_view.png
+> width 1658 height 1210 supersample 3 transparentBackground true
+> show #!7 models
+> hide #!7 models
+> show #!7 models
+> show #!4 models
+> hide #!4 models
+> show #!6 models
+> hide #!6 models
+> show #!8 models
+> hide #!8 models
+> hide #!7 models
+> hide #!5 models
+> show #!7 models
+> hide #!7 models
+> show #!5 models
+> hide #!5 models
+> show #!1 models
+> hide #!1 models
+> show #!4 models
+> hide #!4 models
+> show #3 models
+> hide #3 models
+> show #!2 models
+> hide #!2 models
+> show #!5 models
+> hide #!5 models
+> show #!6 models
+> lighting soft
+> show #!5 models
+> hide #!5 models
+> show #!5 models
+> select add #5
+atoms, 169015 bonds, 22022 residues, 78 models selected
+Alignment identifier is 1
+> hide #!6 models
+> show #!6 models
+> hide #!56 models
+> select clear
+> select #5.1/0:115 #5.2/1:115 #5.3/2:115 #5.4/3:115 #5.5/4:115 #5.6/5:115
+> #5.7/6:115 #5.8/7:115 #5.9/8:115 #5.10/9:115 #5.11/AA:115 #5.12/AB:115
+> #5.13/AC:115 #5.14/AD:115 #5.15/AE:115 #5.16/AF:115 #5.17/AG:115
+> #5.18/AH:115 #5.19/AI:115 #5.20/AJ:115 #5.21/AK:115 #5.22/AL:115
+> #5.23/AM:115 #5.24/AN:115 #5.25/AO:115 #5.26/AP:115 #5.27/B:115 #5.28/C:115
+> #5.29/D:115 #5.30/E:115 #5.31/F:115 #5.32/G:115 #5.33/H:115 #5.34/I:115
+> #5.35/J:115 #5.36/K:115 #5.37/L:115 #5.38/M:115 #5.39/N:115 #5.40/O:115
+> #5.41/P:115 #5.42/Q:115 #5.43/R:115 #5.44/S:115 #5.45/T:115 #5.46/U:115
+> #5.47/V:115 #5.48/W:115 #5.49/X:115 #5.50/Y:115 #5.51/Z:115 #5.52/a:115
+> #5.53/b:115 #5.54/c:115 #5.55/d:115 #5.56/e:115 #5.57/f:115 #5.58/g:115
+> #5.59/h:115 #5.60/i:115 #5.61/j:115 #5.62/k:115 #5.63/l:115 #5.64/m:115
+> #5.65/n:115 #5.66/o:115 #5.67/p:115 #5.68/q:115 #5.69/r:115 #5.70/s:115
+> #5.71/t:115 #5.72/u:115 #5.73/v:115 #5.74/w:115 #5.75/x:115 #5.76/y:115
+> #5.77/z:115
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:115 #5.2/1:115 #5.3/2:115 #5.4/3:115 #5.5/4:115 #5.6/5:115
+> #5.7/6:115 #5.8/7:115 #5.9/8:115 #5.10/9:115 #5.11/AA:115 #5.12/AB:115
+> #5.13/AC:115 #5.14/AD:115 #5.15/AE:115 #5.16/AF:115 #5.17/AG:115
+> #5.18/AH:115 #5.19/AI:115 #5.20/AJ:115 #5.21/AK:115 #5.22/AL:115
+> #5.23/AM:115 #5.24/AN:115 #5.25/AO:115 #5.26/AP:115 #5.27/B:115 #5.28/C:115
+> #5.29/D:115 #5.30/E:115 #5.31/F:115 #5.32/G:115 #5.33/H:115 #5.34/I:115
+> #5.35/J:115 #5.36/K:115 #5.37/L:115 #5.38/M:115 #5.39/N:115 #5.40/O:115
+> #5.41/P:115 #5.42/Q:115 #5.43/R:115 #5.44/S:115 #5.45/T:115 #5.46/U:115
+> #5.47/V:115 #5.48/W:115 #5.49/X:115 #5.50/Y:115 #5.51/Z:115 #5.52/a:115
+> #5.53/b:115 #5.54/c:115 #5.55/d:115 #5.56/e:115 #5.57/f:115 #5.58/g:115
+> #5.59/h:115 #5.60/i:115 #5.61/j:115 #5.62/k:115 #5.63/l:115 #5.64/m:115
+> #5.65/n:115 #5.66/o:115 #5.67/p:115 #5.68/q:115 #5.69/r:115 #5.70/s:115
+> #5.71/t:115 #5.72/u:115 #5.73/v:115 #5.74/w:115 #5.75/x:115 #5.76/y:115
+> #5.77/z:115
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [115] RMSD: 167.880
+> show #!1 models
+> hide #!6 models
+> volume #1 level 0.4873
+> hide #!1 models
+> show #!1 models
+> color (#5.2,4,33,38,53,60,62,66,68,72,74 & sel) red
+> color zone #1 near sel distance 6
+> color zone #1 near sel distance 6.39
+> color zone #1 near sel distance 8.98
+> color zone #1 near sel distance 9
+> select clear
+> select #5.53/b:115
+atoms, 5 bonds, 1 residue, 1 model selected
+> color single #1
+> color zone #1 near sel distance 9
+> volume splitbyzone #1
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 0 as #13.1, grid size
+,360,360, pixel 1.07, shown at level 0.487, step 1, values float32
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1 as #13.2, grid size
+,360,360, pixel 1.07, shown at level 0.487, step 1, values float32
+> select clear
+> hide #!13.1 models
+> hide #!5 models
+> close #13.1
+> ui tool show "Segment Map"
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1, density threshold
+.487293
+Showing 16 region surfaces
+watershed regions, grouped to 16 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map 1.seg - 16 regions, 16
+surfaces
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1, density threshold
+.487293
+Showing 16 region surfaces
+watershed regions, grouped to 16 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map 1.seg - 16 regions, 16
+surfaces
+> select #14.1
+model selected
+> select clear
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1, density threshold
+.487293
+Showing 16 region surfaces
+watershed regions, grouped to 16 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map 1.seg - 16 regions, 16
+surfaces
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1, density threshold
+.487293
+Showing 1 region surfaces
+watershed regions, grouped to 1 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map 1.seg - 1 regions, 1
+surfaces
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1, density threshold
+.487293
+Showing 24 region surfaces
+watershed regions, grouped to 24 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map 1.seg - 24 regions, 24
+surfaces
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1, density threshold
+.487293
+Showing 27 region surfaces
+watershed regions, grouped to 27 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map 1.seg - 27 regions, 27
+surfaces
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1, density threshold
+.487293
+Showing 16 region surfaces
+watershed regions, grouped to 16 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map 1.seg - 16 regions, 16
+surfaces
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1, density threshold
+.487293
+Showing 24 region surfaces
+watershed regions, grouped to 24 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map 1.seg - 24 regions, 24
+surfaces
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1, density threshold
+.487293
+Showing 16 region surfaces
+watershed regions, grouped to 16 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map 1.seg - 16 regions, 16
+surfaces
+> select #14.3
+model selected
+Grouped 15 regions
+Deleted 1 regions
+> select #13.2
+models selected
+> select #14.3
+model selected
+Showing 1 region surfaces
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1, density threshold
+.487293
+Showing 16 region surfaces
+watershed regions, grouped to 16 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map 1.seg - 16 regions, 16
+surfaces
+> select #14.3
+model selected
+Grouped 15 regions
+> select #14.1
+model selected
+> select clear
+> select #14.1
+model selected
+> surface dust #13.2 size 10.7
+> select clear
+> select #14.3
+model selected
+> select clear
+> select #14.1
+model selected
+> select clear
+> select #14.1
+model selected
+> select clear
+> select #14.1
+model selected
+> select #13.2
+models selected
+> select clear
+> select #13.2
+models selected
+> volume sel hide
+> select #14.3
+model selected
+> select clear
+> volume show
+> volume #!1-2,4,6,8,100#!13.2 hide
+> show #!13.2 models
+> select #14.3
+model selected
+> select clear
+Showing 2 region surfaces
+> select #14.1
+model selected
+> select #14.3
+model selected
+> select clear
+> select #14.1
+model selected
+> select clear
+> select #14.1
+model selected
+> select clear
+> select #14.1
+model selected
+> ui tool show "Map Eraser"
+> ui mousemode right "translate selected models"
+> select add #14
+models selected
+> select subtract #14
+Nothing selected
+> select add #15
+model selected
+> view matrix models #15,1,0,0,140.45,0,1,0,187.99,0,0,1,240.03
+No atoms selected for color zoning
+> volume erase #13.2 center 140.45,187.99,240.03 radius 3.1283
+> view matrix models #15,1,0,0,140.72,0,1,0,183.57,0,0,1,245.42
+> view matrix models #15,1,0,0,136.83,0,1,0,182.18,0,0,1,246.06
+> volume erase #13.2 center 136.83,182.18,246.06 radius 3.1283
+> view matrix models #15,1,0,0,142.95,0,1,0,190.89,0,0,1,245.96
+> volume erase #13.2 center 142.95,190.89,245.96 radius 3.1283
+> view matrix models #15,1,0,0,141.61,0,1,0,189.59,0,0,1,238.26
+> view matrix models #15,1,0,0,142.23,0,1,0,192.57,0,0,1,237.71
+> volume erase #13.2 center 142.23,192.57,237.71 radius 3.1283
+> undo
+> hide #!14 models
+> show #!14 models
+> hide #!13.2 models
+> show #!13.2 models
+> volume copy #13.2 subregion 123,166,226,132,175,235
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1 copy as #16, grid size
+,10,10, pixel 1.07, shown at step 1, values float32
+> volume copy #16 subregion 0,0,0,9,9,9
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1 copy as #17, grid size
+,10,10, pixel 1.07, shown at step 1, values float32
+> volume copy #17 subregion 0,0,0,9,9,9
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1 copy as #18, grid size
+,10,10, pixel 1.07, shown at step 1, values float32
+> volume copy #18 subregion 0,0,0,9,9,9
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1 copy as #19, grid size
+,10,10, pixel 1.07, shown at step 1, values float32
+> volume copy #19 subregion 0,0,0,9,9,9
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1 copy as #20, grid size
+,10,10, pixel 1.07, shown at step 1, values float32
+> view matrix models #15,1,0,0,137.16,0,1,0,194.55,0,0,1,243.88
+> volume copy #20 subregion 1,9,0,9,9,7
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1 copy as #21, grid size
+,1,8, pixel 1.07, shown at step 1, values float32
+> volume copy #21 subregion 0,0,0,8,0,7
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1 copy as #22, grid size
+,1,8, pixel 1.07, shown at step 1, values float32
+> volume copy #22 subregion 0,0,0,8,0,7
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1 copy as #23, grid size
+,1,8, pixel 1.07, shown at step 1, values float32
+> volume copy #23 subregion 0,0,0,8,0,7
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1 copy as #24, grid size
+,1,8, pixel 1.07, shown at step 1, values float32
+> view matrix models #15,1,0,0,135.98,0,1,0,192.75,0,0,1,240.1
+> volume copy #24 subregion 0,0,0,8,0,3
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc 1 copy as #25, grid size
+,1,4, pixel 1.07, shown at step 1, values float32
+> volume erase #25 center 135.98,192.75,240.1 radius 3.8448 outside true
+> volume erase #25 center 135.98,192.75,240.1 radius 3.8448
+> view matrix models #15,1,0,0,145.75,0,1,0,187.58,0,0,1,241.99
+> show #!16 models
+> show #!17 models
+> show #!18 models
+> show #!19 models
+> close #16-25
+> select subtract #15
+Nothing selected
+> show #!13.2 models
+> close #13
+> ~hbonds
+Alignment identifier is 1
+Alignment identifier is 2
+Alignment identifier is 3
+Alignment identifier is 4
+Alignment identifier is 5
+Alignment identifier is 6
+Alignment identifier is 7
+Alignment identifier is 8
+> close #15
+> close #14
+> show #!5 models
+> hide #!5 models
+> show #!5 models
+> ui mousemode right select
+> select #5.60/i:115
+atoms, 5 bonds, 1 residue, 1 model selected
+> show #!6 models
+> select #5.53/b:115
+atoms, 5 bonds, 1 residue, 1 model selected
+> ui tool show "Color Zone"
+> color zone #6 near sel distance 7
+> color zone #6 near sel distance 7.1
+> color zone #6 near sel distance 7.2
+> color zone #6 near sel distance 7.3
+> color zone #6 near sel distance 7.4
+> color zone #6 near sel distance 7.5
+> color zone #6 near sel distance 7.6
+> color zone #6 near sel distance 7.7
+> color zone #6 near sel distance 7.8
+> color zone #6 near sel distance 7.9
+> color zone #6 near sel distance 8
+> color zone #6 near sel distance 8.1
+> color zone #6 near sel distance 8.2
+> color zone #6 near sel distance 8.3
+> color zone #6 near sel distance 8.4
+> color zone #6 near sel distance 8.5
+> color zone #6 near sel distance 8.6
+> color zone #6 near sel distance 8.7
+> color zone #6 near sel distance 8.8
+> color zone #6 near sel distance 8.7
+> color zone #6 near sel distance 8.8
+> color zone #6 near sel distance 8.9
+> color zone #6 near sel distance 9
+> volume splitbyzone #6
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 0 as #13.1, grid
+size 143,142,360, pixel 1.07, shown at level 0.5, step 1, values float32
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1 as #13.2, grid
+size 143,142,360, pixel 1.07, shown at level 0.5, step 1, values float32
+> close #13.1
+> hide #!5 models
+> select add #5
+atoms, 169015 bonds, 22022 residues, 78 models selected
+> select subtract #5
+Nothing selected
+> select add #13.2
+models selected
+> select subtract #13.2
+Nothing selected
+> ui tool show "Segment Map"
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1, density
+threshold 0.500000
+Showing 16 region surfaces
+watershed regions, grouped to 16 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map zone 1.seg - 16 regions, 16
+surfaces
+> select #14.3
+model selected
+Grouped 15 regions
+> select clear
+> select #14.3
+model selected
+Saving 1 regions to mrc file...
+Opened S115_glycan.mrc as #15, grid size 9,10,12, pixel 1.07, shown at step 1,
+values float32
+Wrote S115_glycan.mrc
+> select clear
+> hide #!13 models
+> hide #!14 models
+> close #16
+> volume #15 level 0.05253
+> volume #15 style mesh
+> volume #15 step 2
+> volume #15 step 1
+> graphics silhouettes false
+> color #15 red models
+> volume #15 style surface
+> color #15 #ff1721ff models
+> color #15 #d7333cff models
+> color #15 #ff1721ff models
+> lighting soft
+> lighting flat
+> lighting soft
+> graphics silhouettes false
+> color #15 #e93323ff models
+> color #15 #ff1721ff models
+> color #15 red models
+> color #15 #ff1721ff models
+> color #15 #d7333cff models
+> color #15 #ff1721ff models
+> show #!5 models
+> graphics silhouettes true
+> show #!6 models
+> color single #6
+> select add #5
+atoms, 169015 bonds, 22022 residues, 78 models selected
+> select subtract #5
+Nothing selected
+> select add #5
+atoms, 169015 bonds, 22022 residues, 78 models selected
+Alignment identifier is 1
+> select #5.1/0:115 #5.2/1:115 #5.3/2:115 #5.4/3:115 #5.5/4:115 #5.6/5:115
+> #5.7/6:115 #5.8/7:115 #5.9/8:115 #5.10/9:115 #5.11/AA:115 #5.12/AB:115
+> #5.13/AC:115 #5.14/AD:115 #5.15/AE:115 #5.16/AF:115 #5.17/AG:115
+> #5.18/AH:115 #5.19/AI:115 #5.20/AJ:115 #5.21/AK:115 #5.22/AL:115
+> #5.23/AM:115 #5.24/AN:115 #5.25/AO:115 #5.26/AP:115 #5.27/B:115 #5.28/C:115
+> #5.29/D:115 #5.30/E:115 #5.31/F:115 #5.32/G:115 #5.33/H:115 #5.34/I:115
+> #5.35/J:115 #5.36/K:115 #5.37/L:115 #5.38/M:115 #5.39/N:115 #5.40/O:115
+> #5.41/P:115 #5.42/Q:115 #5.43/R:115 #5.44/S:115 #5.45/T:115 #5.46/U:115
+> #5.47/V:115 #5.48/W:115 #5.49/X:115 #5.50/Y:115 #5.51/Z:115 #5.52/a:115
+> #5.53/b:115 #5.54/c:115 #5.55/d:115 #5.56/e:115 #5.57/f:115 #5.58/g:115
+> #5.59/h:115 #5.60/i:115 #5.61/j:115 #5.62/k:115 #5.63/l:115 #5.64/m:115
+> #5.65/n:115 #5.66/o:115 #5.67/p:115 #5.68/q:115 #5.69/r:115 #5.70/s:115
+> #5.71/t:115 #5.72/u:115 #5.73/v:115 #5.74/w:115 #5.75/x:115 #5.76/y:115
+> #5.77/z:115
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:115 #5.2/1:115 #5.3/2:115 #5.4/3:115 #5.5/4:115 #5.6/5:115
+> #5.7/6:115 #5.8/7:115 #5.9/8:115 #5.10/9:115 #5.11/AA:115 #5.12/AB:115
+> #5.13/AC:115 #5.14/AD:115 #5.15/AE:115 #5.16/AF:115 #5.17/AG:115
+> #5.18/AH:115 #5.19/AI:115 #5.20/AJ:115 #5.21/AK:115 #5.22/AL:115
+> #5.23/AM:115 #5.24/AN:115 #5.25/AO:115 #5.26/AP:115 #5.27/B:115 #5.28/C:115
+> #5.29/D:115 #5.30/E:115 #5.31/F:115 #5.32/G:115 #5.33/H:115 #5.34/I:115
+> #5.35/J:115 #5.36/K:115 #5.37/L:115 #5.38/M:115 #5.39/N:115 #5.40/O:115
+> #5.41/P:115 #5.42/Q:115 #5.43/R:115 #5.44/S:115 #5.45/T:115 #5.46/U:115
+> #5.47/V:115 #5.48/W:115 #5.49/X:115 #5.50/Y:115 #5.51/Z:115 #5.52/a:115
+> #5.53/b:115 #5.54/c:115 #5.55/d:115 #5.56/e:115 #5.57/f:115 #5.58/g:115
+> #5.59/h:115 #5.60/i:115 #5.61/j:115 #5.62/k:115 #5.63/l:115 #5.64/m:115
+> #5.65/n:115 #5.66/o:115 #5.67/p:115 #5.68/q:115 #5.69/r:115 #5.70/s:115
+> #5.71/t:115 #5.72/u:115 #5.73/v:115 #5.74/w:115 #5.75/x:115 #5.76/y:115
+> #5.77/z:115
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [115] RMSD: 167.880
+> select clear
+> select #5.1/0:126 #5.2/1:126 #5.3/2:126 #5.4/3:126 #5.5/4:126 #5.6/5:126
+> #5.7/6:126 #5.8/7:126 #5.9/8:126 #5.10/9:126 #5.11/AA:126 #5.12/AB:126
+> #5.13/AC:126 #5.14/AD:126 #5.15/AE:126 #5.16/AF:126 #5.17/AG:126
+> #5.18/AH:126 #5.19/AI:126 #5.20/AJ:126 #5.21/AK:126 #5.22/AL:126
+> #5.23/AM:126 #5.24/AN:126 #5.25/AO:126 #5.26/AP:126 #5.27/B:126 #5.28/C:126
+> #5.29/D:126 #5.30/E:126 #5.31/F:126 #5.32/G:126 #5.33/H:126 #5.34/I:126
+> #5.35/J:126 #5.36/K:126 #5.37/L:126 #5.38/M:126 #5.39/N:126 #5.40/O:126
+> #5.41/P:126 #5.42/Q:126 #5.43/R:126 #5.44/S:126 #5.45/T:126 #5.46/U:126
+> #5.47/V:126 #5.48/W:126 #5.49/X:126 #5.50/Y:126 #5.51/Z:126 #5.52/a:126
+> #5.53/b:126 #5.54/c:126 #5.55/d:126 #5.56/e:126 #5.57/f:126 #5.58/g:126
+> #5.59/h:126 #5.60/i:126 #5.61/j:126 #5.62/k:126 #5.63/l:126 #5.64/m:126
+> #5.65/n:126 #5.66/o:126 #5.67/p:126 #5.68/q:126 #5.69/r:126 #5.70/s:126
+> #5.71/t:126 #5.72/u:126 #5.73/v:126 #5.74/w:126 #5.75/x:126 #5.76/y:126
+> #5.77/z:126
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:126 #5.2/1:126 #5.3/2:126 #5.4/3:126 #5.5/4:126 #5.6/5:126
+> #5.7/6:126 #5.8/7:126 #5.9/8:126 #5.10/9:126 #5.11/AA:126 #5.12/AB:126
+> #5.13/AC:126 #5.14/AD:126 #5.15/AE:126 #5.16/AF:126 #5.17/AG:126
+> #5.18/AH:126 #5.19/AI:126 #5.20/AJ:126 #5.21/AK:126 #5.22/AL:126
+> #5.23/AM:126 #5.24/AN:126 #5.25/AO:126 #5.26/AP:126 #5.27/B:126 #5.28/C:126
+> #5.29/D:126 #5.30/E:126 #5.31/F:126 #5.32/G:126 #5.33/H:126 #5.34/I:126
+> #5.35/J:126 #5.36/K:126 #5.37/L:126 #5.38/M:126 #5.39/N:126 #5.40/O:126
+> #5.41/P:126 #5.42/Q:126 #5.43/R:126 #5.44/S:126 #5.45/T:126 #5.46/U:126
+> #5.47/V:126 #5.48/W:126 #5.49/X:126 #5.50/Y:126 #5.51/Z:126 #5.52/a:126
+> #5.53/b:126 #5.54/c:126 #5.55/d:126 #5.56/e:126 #5.57/f:126 #5.58/g:126
+> #5.59/h:126 #5.60/i:126 #5.61/j:126 #5.62/k:126 #5.63/l:126 #5.64/m:126
+> #5.65/n:126 #5.66/o:126 #5.67/p:126 #5.68/q:126 #5.69/r:126 #5.70/s:126
+> #5.71/t:126 #5.72/u:126 #5.73/v:126 #5.74/w:126 #5.75/x:126 #5.76/y:126
+> #5.77/z:126
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [126] RMSD: 167.782
+> color (#5.2,4,33,38,53,60,62,66,68,72,74 & sel) red
+> select clear
+> select #5.1/0:126-127 #5.2/1:126-127 #5.3/2:126-127 #5.4/3:126-127
+> #5.5/4:126-127 #5.6/5:126-127 #5.7/6:126-127 #5.8/7:126-127 #5.9/8:126-127
+> #5.10/9:126-127 #5.11/AA:126-127 #5.12/AB:126-127 #5.13/AC:126-127
+> #5.14/AD:126-127 #5.15/AE:126-127 #5.16/AF:126-127 #5.17/AG:126-127
+> #5.18/AH:126-127 #5.19/AI:126-127 #5.20/AJ:126-127 #5.21/AK:126-127
+> #5.22/AL:126-127 #5.23/AM:126-127 #5.24/AN:126-127 #5.25/AO:126-127
+> #5.26/AP:126-127 #5.27/B:126-127 #5.28/C:126-127 #5.29/D:126-127
+> #5.30/E:126-127 #5.31/F:126-127 #5.32/G:126-127 #5.33/H:126-127
+> #5.34/I:126-127 #5.35/J:126-127 #5.36/K:126-127 #5.37/L:126-127
+> #5.38/M:126-127 #5.39/N:126-127 #5.40/O:126-127 #5.41/P:126-127
+> #5.42/Q:126-127 #5.43/R:126-127 #5.44/S:126-127 #5.45/T:126-127
+> #5.46/U:126-127 #5.47/V:126-127 #5.48/W:126-127 #5.49/X:126-127
+> #5.50/Y:126-127 #5.51/Z:126-127 #5.52/a:126-127 #5.53/b:126-127
+> #5.54/c:126-127 #5.55/d:126-127 #5.56/e:126-127 #5.57/f:126-127
+> #5.58/g:126-127 #5.59/h:126-127 #5.60/i:126-127 #5.61/j:126-127
+> #5.62/k:126-127 #5.63/l:126-127 #5.64/m:126-127 #5.65/n:126-127
+> #5.66/o:126-127 #5.67/p:126-127 #5.68/q:126-127 #5.69/r:126-127
+> #5.70/s:126-127 #5.71/t:126-127 #5.72/u:126-127 #5.73/v:126-127
+> #5.74/w:126-127 #5.75/x:126-127 #5.76/y:126-127 #5.77/z:126-127
+atoms, 847 bonds, 154 residues, 77 models selected
+> select #5.1/0:126-127 #5.2/1:126-127 #5.3/2:126-127 #5.4/3:126-127
+> #5.5/4:126-127 #5.6/5:126-127 #5.7/6:126-127 #5.8/7:126-127 #5.9/8:126-127
+> #5.10/9:126-127 #5.11/AA:126-127 #5.12/AB:126-127 #5.13/AC:126-127
+> #5.14/AD:126-127 #5.15/AE:126-127 #5.16/AF:126-127 #5.17/AG:126-127
+> #5.18/AH:126-127 #5.19/AI:126-127 #5.20/AJ:126-127 #5.21/AK:126-127
+> #5.22/AL:126-127 #5.23/AM:126-127 #5.24/AN:126-127 #5.25/AO:126-127
+> #5.26/AP:126-127 #5.27/B:126-127 #5.28/C:126-127 #5.29/D:126-127
+> #5.30/E:126-127 #5.31/F:126-127 #5.32/G:126-127 #5.33/H:126-127
+> #5.34/I:126-127 #5.35/J:126-127 #5.36/K:126-127 #5.37/L:126-127
+> #5.38/M:126-127 #5.39/N:126-127 #5.40/O:126-127 #5.41/P:126-127
+> #5.42/Q:126-127 #5.43/R:126-127 #5.44/S:126-127 #5.45/T:126-127
+> #5.46/U:126-127 #5.47/V:126-127 #5.48/W:126-127 #5.49/X:126-127
+> #5.50/Y:126-127 #5.51/Z:126-127 #5.52/a:126-127 #5.53/b:126-127
+> #5.54/c:126-127 #5.55/d:126-127 #5.56/e:126-127 #5.57/f:126-127
+> #5.58/g:126-127 #5.59/h:126-127 #5.60/i:126-127 #5.61/j:126-127
+> #5.62/k:126-127 #5.63/l:126-127 #5.64/m:126-127 #5.65/n:126-127
+> #5.66/o:126-127 #5.67/p:126-127 #5.68/q:126-127 #5.69/r:126-127
+> #5.70/s:126-127 #5.71/t:126-127 #5.72/u:126-127 #5.73/v:126-127
+> #5.74/w:126-127 #5.75/x:126-127 #5.76/y:126-127 #5.77/z:126-127
+atoms, 847 bonds, 154 residues, 77 models selected
+[ID: 1] region 77 chains [126-127] RMSD: 166.821
+> select #5.1/0:126 #5.2/1:126 #5.3/2:126 #5.4/3:126 #5.5/4:126 #5.6/5:126
+> #5.7/6:126 #5.8/7:126 #5.9/8:126 #5.10/9:126 #5.11/AA:126 #5.12/AB:126
+> #5.13/AC:126 #5.14/AD:126 #5.15/AE:126 #5.16/AF:126 #5.17/AG:126
+> #5.18/AH:126 #5.19/AI:126 #5.20/AJ:126 #5.21/AK:126 #5.22/AL:126
+> #5.23/AM:126 #5.24/AN:126 #5.25/AO:126 #5.26/AP:126 #5.27/B:126 #5.28/C:126
+> #5.29/D:126 #5.30/E:126 #5.31/F:126 #5.32/G:126 #5.33/H:126 #5.34/I:126
+> #5.35/J:126 #5.36/K:126 #5.37/L:126 #5.38/M:126 #5.39/N:126 #5.40/O:126
+> #5.41/P:126 #5.42/Q:126 #5.43/R:126 #5.44/S:126 #5.45/T:126 #5.46/U:126
+> #5.47/V:126 #5.48/W:126 #5.49/X:126 #5.50/Y:126 #5.51/Z:126 #5.52/a:126
+> #5.53/b:126 #5.54/c:126 #5.55/d:126 #5.56/e:126 #5.57/f:126 #5.58/g:126
+> #5.59/h:126 #5.60/i:126 #5.61/j:126 #5.62/k:126 #5.63/l:126 #5.64/m:126
+> #5.65/n:126 #5.66/o:126 #5.67/p:126 #5.68/q:126 #5.69/r:126 #5.70/s:126
+> #5.71/t:126 #5.72/u:126 #5.73/v:126 #5.74/w:126 #5.75/x:126 #5.76/y:126
+> #5.77/z:126
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:126 #5.2/1:126 #5.3/2:126 #5.4/3:126 #5.5/4:126 #5.6/5:126
+> #5.7/6:126 #5.8/7:126 #5.9/8:126 #5.10/9:126 #5.11/AA:126 #5.12/AB:126
+> #5.13/AC:126 #5.14/AD:126 #5.15/AE:126 #5.16/AF:126 #5.17/AG:126
+> #5.18/AH:126 #5.19/AI:126 #5.20/AJ:126 #5.21/AK:126 #5.22/AL:126
+> #5.23/AM:126 #5.24/AN:126 #5.25/AO:126 #5.26/AP:126 #5.27/B:126 #5.28/C:126
+> #5.29/D:126 #5.30/E:126 #5.31/F:126 #5.32/G:126 #5.33/H:126 #5.34/I:126
+> #5.35/J:126 #5.36/K:126 #5.37/L:126 #5.38/M:126 #5.39/N:126 #5.40/O:126
+> #5.41/P:126 #5.42/Q:126 #5.43/R:126 #5.44/S:126 #5.45/T:126 #5.46/U:126
+> #5.47/V:126 #5.48/W:126 #5.49/X:126 #5.50/Y:126 #5.51/Z:126 #5.52/a:126
+> #5.53/b:126 #5.54/c:126 #5.55/d:126 #5.56/e:126 #5.57/f:126 #5.58/g:126
+> #5.59/h:126 #5.60/i:126 #5.61/j:126 #5.62/k:126 #5.63/l:126 #5.64/m:126
+> #5.65/n:126 #5.66/o:126 #5.67/p:126 #5.68/q:126 #5.69/r:126 #5.70/s:126
+> #5.71/t:126 #5.72/u:126 #5.73/v:126 #5.74/w:126 #5.75/x:126 #5.76/y:126
+> #5.77/z:126
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [126] RMSD: 167.782
+> ui tool show "Side View"
+> show #!5 target m
+> select clear
+> select add #5.74
+atoms, 2195 bonds, 286 residues, 1 model selected
+> select add #5.72
+atoms, 4390 bonds, 572 residues, 2 models selected
+> select add #5.68
+atoms, 6585 bonds, 858 residues, 3 models selected
+> select add #5.66
+atoms, 8780 bonds, 1144 residues, 4 models selected
+> select add #5.62
+atoms, 10975 bonds, 1430 residues, 5 models selected
+> select add #5.60
+atoms, 13170 bonds, 1716 residues, 6 models selected
+> select add #5.53
+atoms, 15365 bonds, 2002 residues, 7 models selected
+> select add #5.38
+atoms, 17560 bonds, 2288 residues, 8 models selected
+> select add #5.33
+atoms, 19755 bonds, 2574 residues, 9 models selected
+> select add #5.4
+atoms, 21950 bonds, 2860 residues, 10 models selected
+> select add #5.2
+atoms, 24145 bonds, 3146 residues, 11 models selected
+> combine sel
+> hide #16 models
+> select clear
+> show #16 models
+> hide #!5 models
+> hide #16 models
+> show #16 models
+> hide #16 models
+> show #16 models
+> rename #16 core_one_layer
+> hide #16 models
+> show #!5 models
+> show #5.1-77 target m
+> select #5.1/0:126 #5.2/1:126 #5.3/2:126 #5.4/3:126 #5.5/4:126 #5.6/5:126
+> #5.7/6:126 #5.8/7:126 #5.9/8:126 #5.10/9:126 #5.11/AA:126 #5.12/AB:126
+> #5.13/AC:126 #5.14/AD:126 #5.15/AE:126 #5.16/AF:126 #5.17/AG:126
+> #5.18/AH:126 #5.19/AI:126 #5.20/AJ:126 #5.21/AK:126 #5.22/AL:126
+> #5.23/AM:126 #5.24/AN:126 #5.25/AO:126 #5.26/AP:126 #5.27/B:126 #5.28/C:126
+> #5.29/D:126 #5.30/E:126 #5.31/F:126 #5.32/G:126 #5.33/H:126 #5.34/I:126
+> #5.35/J:126 #5.36/K:126 #5.37/L:126 #5.38/M:126 #5.39/N:126 #5.40/O:126
+> #5.41/P:126 #5.42/Q:126 #5.43/R:126 #5.44/S:126 #5.45/T:126 #5.46/U:126
+> #5.47/V:126 #5.48/W:126 #5.49/X:126 #5.50/Y:126 #5.51/Z:126 #5.52/a:126
+> #5.53/b:126 #5.54/c:126 #5.55/d:126 #5.56/e:126 #5.57/f:126 #5.58/g:126
+> #5.59/h:126 #5.60/i:126 #5.61/j:126 #5.62/k:126 #5.63/l:126 #5.64/m:126
+> #5.65/n:126 #5.66/o:126 #5.67/p:126 #5.68/q:126 #5.69/r:126 #5.70/s:126
+> #5.71/t:126 #5.72/u:126 #5.73/v:126 #5.74/w:126 #5.75/x:126 #5.76/y:126
+> #5.77/z:126
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:126 #5.2/1:126 #5.3/2:126 #5.4/3:126 #5.5/4:126 #5.6/5:126
+> #5.7/6:126 #5.8/7:126 #5.9/8:126 #5.10/9:126 #5.11/AA:126 #5.12/AB:126
+> #5.13/AC:126 #5.14/AD:126 #5.15/AE:126 #5.16/AF:126 #5.17/AG:126
+> #5.18/AH:126 #5.19/AI:126 #5.20/AJ:126 #5.21/AK:126 #5.22/AL:126
+> #5.23/AM:126 #5.24/AN:126 #5.25/AO:126 #5.26/AP:126 #5.27/B:126 #5.28/C:126
+> #5.29/D:126 #5.30/E:126 #5.31/F:126 #5.32/G:126 #5.33/H:126 #5.34/I:126
+> #5.35/J:126 #5.36/K:126 #5.37/L:126 #5.38/M:126 #5.39/N:126 #5.40/O:126
+> #5.41/P:126 #5.42/Q:126 #5.43/R:126 #5.44/S:126 #5.45/T:126 #5.46/U:126
+> #5.47/V:126 #5.48/W:126 #5.49/X:126 #5.50/Y:126 #5.51/Z:126 #5.52/a:126
+> #5.53/b:126 #5.54/c:126 #5.55/d:126 #5.56/e:126 #5.57/f:126 #5.58/g:126
+> #5.59/h:126 #5.60/i:126 #5.61/j:126 #5.62/k:126 #5.63/l:126 #5.64/m:126
+> #5.65/n:126 #5.66/o:126 #5.67/p:126 #5.68/q:126 #5.69/r:126 #5.70/s:126
+> #5.71/t:126 #5.72/u:126 #5.73/v:126 #5.74/w:126 #5.75/x:126 #5.76/y:126
+> #5.77/z:126
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [126] RMSD: 167.782
+> color sel red
+> select #5.1/0:115 #5.2/1:115 #5.3/2:115 #5.4/3:115 #5.5/4:115 #5.6/5:115
+> #5.7/6:115 #5.8/7:115 #5.9/8:115 #5.10/9:115 #5.11/AA:115 #5.12/AB:115
+> #5.13/AC:115 #5.14/AD:115 #5.15/AE:115 #5.16/AF:115 #5.17/AG:115
+> #5.18/AH:115 #5.19/AI:115 #5.20/AJ:115 #5.21/AK:115 #5.22/AL:115
+> #5.23/AM:115 #5.24/AN:115 #5.25/AO:115 #5.26/AP:115 #5.27/B:115 #5.28/C:115
+> #5.29/D:115 #5.30/E:115 #5.31/F:115 #5.32/G:115 #5.33/H:115 #5.34/I:115
+> #5.35/J:115 #5.36/K:115 #5.37/L:115 #5.38/M:115 #5.39/N:115 #5.40/O:115
+> #5.41/P:115 #5.42/Q:115 #5.43/R:115 #5.44/S:115 #5.45/T:115 #5.46/U:115
+> #5.47/V:115 #5.48/W:115 #5.49/X:115 #5.50/Y:115 #5.51/Z:115 #5.52/a:115
+> #5.53/b:115 #5.54/c:115 #5.55/d:115 #5.56/e:115 #5.57/f:115 #5.58/g:115
+> #5.59/h:115 #5.60/i:115 #5.61/j:115 #5.62/k:115 #5.63/l:115 #5.64/m:115
+> #5.65/n:115 #5.66/o:115 #5.67/p:115 #5.68/q:115 #5.69/r:115 #5.70/s:115
+> #5.71/t:115 #5.72/u:115 #5.73/v:115 #5.74/w:115 #5.75/x:115 #5.76/y:115
+> #5.77/z:115
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:115 #5.2/1:115 #5.3/2:115 #5.4/3:115 #5.5/4:115 #5.6/5:115
+> #5.7/6:115 #5.8/7:115 #5.9/8:115 #5.10/9:115 #5.11/AA:115 #5.12/AB:115
+> #5.13/AC:115 #5.14/AD:115 #5.15/AE:115 #5.16/AF:115 #5.17/AG:115
+> #5.18/AH:115 #5.19/AI:115 #5.20/AJ:115 #5.21/AK:115 #5.22/AL:115
+> #5.23/AM:115 #5.24/AN:115 #5.25/AO:115 #5.26/AP:115 #5.27/B:115 #5.28/C:115
+> #5.29/D:115 #5.30/E:115 #5.31/F:115 #5.32/G:115 #5.33/H:115 #5.34/I:115
+> #5.35/J:115 #5.36/K:115 #5.37/L:115 #5.38/M:115 #5.39/N:115 #5.40/O:115
+> #5.41/P:115 #5.42/Q:115 #5.43/R:115 #5.44/S:115 #5.45/T:115 #5.46/U:115
+> #5.47/V:115 #5.48/W:115 #5.49/X:115 #5.50/Y:115 #5.51/Z:115 #5.52/a:115
+> #5.53/b:115 #5.54/c:115 #5.55/d:115 #5.56/e:115 #5.57/f:115 #5.58/g:115
+> #5.59/h:115 #5.60/i:115 #5.61/j:115 #5.62/k:115 #5.63/l:115 #5.64/m:115
+> #5.65/n:115 #5.66/o:115 #5.67/p:115 #5.68/q:115 #5.69/r:115 #5.70/s:115
+> #5.71/t:115 #5.72/u:115 #5.73/v:115 #5.74/w:115 #5.75/x:115 #5.76/y:115
+> #5.77/z:115
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [115] RMSD: 167.880
+> color sel red
+> select #5.1/0:126 #5.2/1:126 #5.3/2:126 #5.4/3:126 #5.5/4:126 #5.6/5:126
+> #5.7/6:126 #5.8/7:126 #5.9/8:126 #5.10/9:126 #5.11/AA:126 #5.12/AB:126
+> #5.13/AC:126 #5.14/AD:126 #5.15/AE:126 #5.16/AF:126 #5.17/AG:126
+> #5.18/AH:126 #5.19/AI:126 #5.20/AJ:126 #5.21/AK:126 #5.22/AL:126
+> #5.23/AM:126 #5.24/AN:126 #5.25/AO:126 #5.26/AP:126 #5.27/B:126 #5.28/C:126
+> #5.29/D:126 #5.30/E:126 #5.31/F:126 #5.32/G:126 #5.33/H:126 #5.34/I:126
+> #5.35/J:126 #5.36/K:126 #5.37/L:126 #5.38/M:126 #5.39/N:126 #5.40/O:126
+> #5.41/P:126 #5.42/Q:126 #5.43/R:126 #5.44/S:126 #5.45/T:126 #5.46/U:126
+> #5.47/V:126 #5.48/W:126 #5.49/X:126 #5.50/Y:126 #5.51/Z:126 #5.52/a:126
+> #5.53/b:126 #5.54/c:126 #5.55/d:126 #5.56/e:126 #5.57/f:126 #5.58/g:126
+> #5.59/h:126 #5.60/i:126 #5.61/j:126 #5.62/k:126 #5.63/l:126 #5.64/m:126
+> #5.65/n:126 #5.66/o:126 #5.67/p:126 #5.68/q:126 #5.69/r:126 #5.70/s:126
+> #5.71/t:126 #5.72/u:126 #5.73/v:126 #5.74/w:126 #5.75/x:126 #5.76/y:126
+> #5.77/z:126
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:126 #5.2/1:126 #5.3/2:126 #5.4/3:126 #5.5/4:126 #5.6/5:126
+> #5.7/6:126 #5.8/7:126 #5.9/8:126 #5.10/9:126 #5.11/AA:126 #5.12/AB:126
+> #5.13/AC:126 #5.14/AD:126 #5.15/AE:126 #5.16/AF:126 #5.17/AG:126
+> #5.18/AH:126 #5.19/AI:126 #5.20/AJ:126 #5.21/AK:126 #5.22/AL:126
+> #5.23/AM:126 #5.24/AN:126 #5.25/AO:126 #5.26/AP:126 #5.27/B:126 #5.28/C:126
+> #5.29/D:126 #5.30/E:126 #5.31/F:126 #5.32/G:126 #5.33/H:126 #5.34/I:126
+> #5.35/J:126 #5.36/K:126 #5.37/L:126 #5.38/M:126 #5.39/N:126 #5.40/O:126
+> #5.41/P:126 #5.42/Q:126 #5.43/R:126 #5.44/S:126 #5.45/T:126 #5.46/U:126
+> #5.47/V:126 #5.48/W:126 #5.49/X:126 #5.50/Y:126 #5.51/Z:126 #5.52/a:126
+> #5.53/b:126 #5.54/c:126 #5.55/d:126 #5.56/e:126 #5.57/f:126 #5.58/g:126
+> #5.59/h:126 #5.60/i:126 #5.61/j:126 #5.62/k:126 #5.63/l:126 #5.64/m:126
+> #5.65/n:126 #5.66/o:126 #5.67/p:126 #5.68/q:126 #5.69/r:126 #5.70/s:126
+> #5.71/t:126 #5.72/u:126 #5.73/v:126 #5.74/w:126 #5.75/x:126 #5.76/y:126
+> #5.77/z:126
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [126] RMSD: 167.782
+> select clear
+> select #5.72/u:126
+atoms, 5 bonds, 1 residue, 1 model selected
+> color zone #6 near sel distance 9
+> color zone #6 near sel distance 8.9
+> color zone #6 near sel distance 8.8
+> color zone #6 near sel distance 8.7
+> color zone #6 near sel distance 8.6
+> color zone #6 near sel distance 8.5
+> color zone #6 near sel distance 8.4
+> color zone #6 near sel distance 8.3
+> color zone #6 near sel distance 8.2
+> color zone #6 near sel distance 8.1
+> color zone #6 near sel distance 8
+> color zone #6 near sel distance 7.9
+> color zone #6 near sel distance 7.8
+> color zone #6 near sel distance 7.7
+> color zone #6 near sel distance 7.6
+> color zone #6 near sel distance 7.5
+> color zone #6 near sel distance 7.4
+> color zone #6 near sel distance 7.3
+> color zone #6 near sel distance 7.2
+> color zone #6 near sel distance 7.1
+> color zone #6 near sel distance 7
+> color zone #6 near sel distance 6.9
+> color zone #6 near sel distance 6.8
+> color zone #6 near sel distance 6.7
+> color zone #6 near sel distance 6.6
+> color zone #6 near sel distance 6.5
+> color zone #6 near sel distance 6.4
+> color zone #6 near sel distance 6.5
+> color zone #6 near sel distance 6.6
+> volume splitbyzone #6
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 0 as #17.1, grid
+size 143,142,360, pixel 1.07, shown at level 0.5, step 1, values float32
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1 as #17.2, grid
+size 143,142,360, pixel 1.07, shown at level 0.5, step 1, values float32
+> show #!13 models
+> hide #!13 models
+> hide #!15 models
+> show #!15 models
+> close #13
+> close #14
+> show #!9 models
+> hide #!9 models
+> hide #!17.1 models
+> show #!17.1 models
+> close #17.1
+> hide #!5 models
+> select add #5
+atoms, 169015 bonds, 22022 residues, 78 models selected
+> select subtract #5
+Nothing selected
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1, density
+threshold 0.500000
+Showing 8 region surfaces
+watershed regions, grouped to 8 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map zone 1.seg - 8 regions, 8
+surfaces
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1, density
+threshold 0.500000
+Showing 8 region surfaces
+watershed regions, grouped to 8 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map zone 1.seg - 8 regions, 8
+surfaces
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1, density
+threshold 0.500000
+Showing 8 region surfaces
+watershed regions, grouped to 8 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map zone 1.seg - 8 regions, 8
+surfaces
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1, density
+threshold 0.500000
+Showing 8 region surfaces
+watershed regions, grouped to 8 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map zone 1.seg - 8 regions, 8
+surfaces
+> hide #!17.2 models
+> show #!17.2 models
+> select #17.2
+models selected
+> select #17.2
+models selected
+> select clear
+> hide #!17 models
+> show #!17 models
+> hide #!17 models
+> show #!17 models
+> hide #!13 models
+> show #!13 models
+> hide #!13 models
+> show #!6 models
+> hide #!6 models
+> show #!6 models
+> show #!5 models
+> hide #!5 models
+> hide #!6 models
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1, density
+threshold 0.500000
+Traceback (most recent call last):
+File
+"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
+packages/chimerax/segger/segment_dialog.py", line 389, in _segment
+self.Segment()
+File
+"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
+packages/chimerax/segger/segment_dialog.py", line 2123, in Segment
+smod = self.SegmentAndGroup(show, group)
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+File
+"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
+packages/chimerax/segger/segment_dialog.py", line 2158, in SegmentAndGroup
+self.SetSurfaceGranularity(smod)
+File
+"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
+packages/chimerax/segger/segment_dialog.py", line 1300, in
+SetSurfaceGranularity
+res = self._surface_granularity.value
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+File
+"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
+packages/chimerax/ui/widgets/composite.py", line 185, in _get_value
+return self.string_to_value(self._line_edit.text())
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+ValueError: invalid literal for int() with base 10: '0.5'
+ValueError: invalid literal for int() with base 10: '0.5'
+File
+"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
+packages/chimerax/ui/widgets/composite.py", line 185, in _get_value
+return self.string_to_value(self._line_edit.text())
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+See log for complete Python traceback.
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map zone 1.seg - 0 regions, 0
+surfaces
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1, density
+threshold 0.500000
+Showing 14 region surfaces
+watershed regions, grouped to 14 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map zone 1.seg - 14 regions, 14
+surfaces
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1, density
+threshold 0.500000
+Showing 14 region surfaces
+watershed regions, grouped to 14 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map zone 1.seg - 14 regions, 14
+surfaces
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1, density
+threshold 0.500000
+Showing 8 region surfaces
+watershed regions, grouped to 8 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map zone 1.seg - 8 regions, 8
+surfaces
+No atoms selected for color zoning
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1, density
+threshold 0.500000
+Showing 11 region surfaces
+watershed regions, grouped to 11 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map zone 1.seg - 11 regions, 11
+surfaces
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1, density
+threshold 0.500000
+Showing 11 region surfaces
+watershed regions, grouped to 11 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map zone 1.seg - 11 regions, 11
+surfaces
+> select #13.3
+model selected
+> select clear
+> close #13
+> show #!6 models
+> close #17
+> color single #6
+> show #!5 models
+> select #5.74/w:126
+atoms, 5 bonds, 1 residue, 1 model selected
+> color zone #6 near sel distance 6.6
+> color zone #6 near sel distance 6.5
+> color zone #6 near sel distance 6.4
+> color zone #6 near sel distance 6.3
+> color zone #6 near sel distance 6.2
+> color zone #6 near sel distance 6.1
+> color zone #6 near sel distance 6
+> color zone #6 near sel distance 5.9
+> color zone #6 near sel distance 5.8
+> color zone #6 near sel distance 5.7
+> color zone #6 near sel distance 5.6
+> color zone #6 near sel distance 5.5
+> color zone #6 near sel distance 5.4
+> color zone #6 near sel distance 5.3
+> color zone #6 near sel distance 5.4
+> color zone #6 near sel distance 5.5
+> volume splitbyzone #6
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 0 as #13.1, grid
+size 143,142,360, pixel 1.07, shown at level 0.5, step 1, values float32
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1 as #13.2, grid
+size 143,142,360, pixel 1.07, shown at level 0.5, step 1, values float32
+> close #13.1
+> select add #5
+atoms, 169015 bonds, 22022 residues, 78 models selected
+> hide #!5 models
+> select subtract #5
+Nothing selected
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1, density
+threshold 0.500000
+Showing 7 region surfaces
+watershed regions, grouped to 7 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map zone 1.seg - 7 regions, 7
+surfaces
+> hide #!14 models
+> show #!14 models
+> hide #!14 models
+> show #!14 models
+> hide #!13.2 models
+> show #!13.2 models
+> close #14
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1, density
+threshold 0.500000
+Showing 7 region surfaces
+watershed regions, grouped to 7 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map zone 1.seg - 7 regions, 7
+surfaces
+> select #13.2
+models selected
+Ungrouped to 5 regions
+> select #13.2
+models selected
+> ui mousemode right "translate selected models"
+> select add #13
+models selected
+> select subtract #13
+Nothing selected
+> select add #14
+models selected
+> view matrix models #14,1,0,0,0.3082,0,1,0,2.104,0,0,1,-1.4605
+> view matrix models #14,1,0,0,-0.013222,0,1,0,2.5361,0,0,1,-1.4033
+> select subtract #14
+Nothing selected
+> ui mousemode right select
+> select #14.3
+model selected
+> select add #14.10
+models selected
+> select clear
+> select add #14
+models selected
+> select clear
+> select add #14
+models selected
+> ui mousemode right "translate selected models"
+> view matrix models #14,1,0,0,-0.32789,0,1,0,2.5916,0,0,1,-1.4485
+> hide #!15 models
+> show #!15 models
+> hide #!15 models
+> view
+> show #!15 models
+> view matrix models #14,1,0,0,-0.43082,0,1,0,2.6973,0,0,1,-1.4061
+> select subtract #14
+Nothing selected
+> ui mousemode right select
+> select #14.3
+model selected
+> select clear
+> show #!6 models
+> hide #!6 models
+> select #14.10
+model selected
+Ungrouped to 0 regions
+> select #14.3
+model selected
+> select #14.10
+model selected
+> select #14.9
+model selected
+> select #14.3
+model selected
+Grouped 9 regions
+> select clear
+> select #14.3
+model selected
+Saving 1 regions to mrc file...
+Opened S126_glycan.mrc as #17, grid size 7,9,8, pixel 1.07, shown at step 1,
+values float32
+Wrote S126_glycan.mrc
+> close #14
+> close #13
+> hide #!17 models
+> show #!17 models
+> volume #17 level 0.05255
+> color #17 #ff1721ff models
+> hide #!15 models
+> hide #!17 models
+> show #!6 models
+> show #!5 models
+> color single #6
+> select #5.1/0:137 #5.2/1:137 #5.3/2:137 #5.4/3:137 #5.5/4:137 #5.6/5:137
+> #5.7/6:137 #5.8/7:137 #5.9/8:137 #5.10/9:137 #5.11/AA:137 #5.12/AB:137
+> #5.13/AC:137 #5.14/AD:137 #5.15/AE:137 #5.16/AF:137 #5.17/AG:137
+> #5.18/AH:137 #5.19/AI:137 #5.20/AJ:137 #5.21/AK:137 #5.22/AL:137
+> #5.23/AM:137 #5.24/AN:137 #5.25/AO:137 #5.26/AP:137 #5.27/B:137 #5.28/C:137
+> #5.29/D:137 #5.30/E:137 #5.31/F:137 #5.32/G:137 #5.33/H:137 #5.34/I:137
+> #5.35/J:137 #5.36/K:137 #5.37/L:137 #5.38/M:137 #5.39/N:137 #5.40/O:137
+> #5.41/P:137 #5.42/Q:137 #5.43/R:137 #5.44/S:137 #5.45/T:137 #5.46/U:137
+> #5.47/V:137 #5.48/W:137 #5.49/X:137 #5.50/Y:137 #5.51/Z:137 #5.52/a:137
+> #5.53/b:137 #5.54/c:137 #5.55/d:137 #5.56/e:137 #5.57/f:137 #5.58/g:137
+> #5.59/h:137 #5.60/i:137 #5.61/j:137 #5.62/k:137 #5.63/l:137 #5.64/m:137
+> #5.65/n:137 #5.66/o:137 #5.67/p:137 #5.68/q:137 #5.69/r:137 #5.70/s:137
+> #5.71/t:137 #5.72/u:137 #5.73/v:137 #5.74/w:137 #5.75/x:137 #5.76/y:137
+> #5.77/z:137
+atoms, 462 bonds, 77 residues, 77 models selected
+> select #5.1/0:137 #5.2/1:137 #5.3/2:137 #5.4/3:137 #5.5/4:137 #5.6/5:137
+> #5.7/6:137 #5.8/7:137 #5.9/8:137 #5.10/9:137 #5.11/AA:137 #5.12/AB:137
+> #5.13/AC:137 #5.14/AD:137 #5.15/AE:137 #5.16/AF:137 #5.17/AG:137
+> #5.18/AH:137 #5.19/AI:137 #5.20/AJ:137 #5.21/AK:137 #5.22/AL:137
+> #5.23/AM:137 #5.24/AN:137 #5.25/AO:137 #5.26/AP:137 #5.27/B:137 #5.28/C:137
+> #5.29/D:137 #5.30/E:137 #5.31/F:137 #5.32/G:137 #5.33/H:137 #5.34/I:137
+> #5.35/J:137 #5.36/K:137 #5.37/L:137 #5.38/M:137 #5.39/N:137 #5.40/O:137
+> #5.41/P:137 #5.42/Q:137 #5.43/R:137 #5.44/S:137 #5.45/T:137 #5.46/U:137
+> #5.47/V:137 #5.48/W:137 #5.49/X:137 #5.50/Y:137 #5.51/Z:137 #5.52/a:137
+> #5.53/b:137 #5.54/c:137 #5.55/d:137 #5.56/e:137 #5.57/f:137 #5.58/g:137
+> #5.59/h:137 #5.60/i:137 #5.61/j:137 #5.62/k:137 #5.63/l:137 #5.64/m:137
+> #5.65/n:137 #5.66/o:137 #5.67/p:137 #5.68/q:137 #5.69/r:137 #5.70/s:137
+> #5.71/t:137 #5.72/u:137 #5.73/v:137 #5.74/w:137 #5.75/x:137 #5.76/y:137
+> #5.77/z:137
+atoms, 462 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [137] RMSD: 169.412
+> color sel red
+> select #5.59/h:137
+atoms, 6 bonds, 1 residue, 1 model selected
+> select clear
+> select #5.59/h:137
+atoms, 6 bonds, 1 residue, 1 model selected
+> color zone #6 near sel distance 5.5
+> color zone #6 near sel distance 5.6
+> color zone #6 near sel distance 5.7
+> color zone #6 near sel distance 5.8
+> color zone #6 near sel distance 5.9
+> color zone #6 near sel distance 6
+> color zone #6 near sel distance 6.1
+> color zone #6 near sel distance 6.2
+> color zone #6 near sel distance 6.3
+> color zone #6 near sel distance 6.4
+> color zone #6 near sel distance 6.5
+> color zone #6 near sel distance 6.6
+> color zone #6 near sel distance 6.7
+> color zone #6 near sel distance 6.8
+> color zone #6 near sel distance 6.9
+> color zone #6 near sel distance 7
+> color zone #6 near sel distance 7.1
+> color zone #6 near sel distance 7.2
+> color zone #6 near sel distance 7.3
+> color zone #6 near sel distance 7.4
+> color zone #6 near sel distance 7.5
+> color zone #6 near sel distance 7.6
+> color zone #6 near sel distance 7.7
+> color zone #6 near sel distance 7.8
+> color zone #6 near sel distance 7.9
+> color zone #6 near sel distance 8
+> color zone #6 near sel distance 8.1
+> color zone #6 near sel distance 8.2
+> color zone #6 near sel distance 8.3
+> color zone #6 near sel distance 8.4
+> color zone #6 near sel distance 8.5
+> color zone #6 near sel distance 8.6
+> color zone #6 near sel distance 8.7
+> color zone #6 near sel distance 8.8
+> color zone #6 near sel distance 8.9
+> color zone #6 near sel distance 9
+> color zone #6 near sel distance 9.1
+> color zone #6 near sel distance 9.2
+> color zone #6 near sel distance 9.3
+> color zone #6 near sel distance 9.4
+> volume splitbyzone #6
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 0 as #13.1, grid
+size 143,142,360, pixel 1.07, shown at level 0.5, step 1, values float32
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1 as #13.2, grid
+size 143,142,360, pixel 1.07, shown at level 0.5, step 1, values float32
+> close #13.1
+> select add #5
+atoms, 169015 bonds, 22022 residues, 78 models selected
+> select subtract #5
+Nothing selected
+> hide #!5 models
+> show #!6 models
+> hide #!6 models
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1, density
+threshold 0.500000
+Showing 18 region surfaces
+watershed regions, grouped to 18 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map zone 1.seg - 18 regions, 18
+surfaces
+> select #14.13
+model selected
+> select add #14.6
+models selected
+Grouped 16 regions
+> select clear
+> select #14.13
+model selected
+> select add #14.6
+models selected
+Grouped 2 regions
+> select clear
+> select add #14
+models selected
+> ui mousemode right "translate selected models"
+> view matrix models #14,1,0,0,0.048099,0,1,0,0.11042,0,0,1,0.3625
+> view matrix models #14,1,0,0,0.4258,0,1,0,0.14735,0,0,1,0.53558
+> view matrix models #14,1,0,0,0.60118,0,1,0,0.058667,0,0,1,0.60876
+> view matrix models #14,1,0,0,0.83969,0,1,0,-0.022001,0,0,1,0.72488
+> view matrix models #14,1,0,0,0.89322,0,1,0,0.22642,0,0,1,0.79609
+> view matrix models #14,1,0,0,0.85382,0,1,0,0.31038,0,0,1,0.73332
+> view matrix models #14,1,0,0,1.0804,0,1,0,0.2974,0,0,1,0.57119
+> ui mousemode right select
+> select clear
+> select #14.2
+model selected
+Saving 1 regions to mrc file...
+Opened T137_glycan.mrc as #18, grid size 11,10,9, pixel 1.07, shown at step 1,
+values float32
+Wrote T137_glycan.mrc
+> hide #!18 models
+> show #!18 models
+> hide #!13.2 models
+> show #!13.2 models
+> close #13
+> close #14
+> volume #18 level 0.05507
+> volume #15 level 0.055
+> volume #17 level 0.055
+> volume #18 level 0.055
+> color #18 #ff1721ff models
+> show #!17 models
+> show #!15 models
+> hide #!15 models
+> hide #!17 models
+> hide #!18 models
+> show #!6 models
+> color single #6
+> show #!5 models
+> select #5.1/0:152 #5.2/1:152 #5.3/2:152 #5.4/3:152 #5.5/4:152 #5.6/5:152
+> #5.7/6:152 #5.8/7:152 #5.9/8:152 #5.10/9:152 #5.11/AA:152 #5.12/AB:152
+> #5.13/AC:152 #5.14/AD:152 #5.15/AE:152 #5.16/AF:152 #5.17/AG:152
+> #5.18/AH:152 #5.19/AI:152 #5.20/AJ:152 #5.21/AK:152 #5.22/AL:152
+> #5.23/AM:152 #5.24/AN:152 #5.25/AO:152 #5.26/AP:152 #5.27/B:152 #5.28/C:152
+> #5.29/D:152 #5.30/E:152 #5.31/F:152 #5.32/G:152 #5.33/H:152 #5.34/I:152
+> #5.35/J:152 #5.36/K:152 #5.37/L:152 #5.38/M:152 #5.39/N:152 #5.40/O:152
+> #5.41/P:152 #5.42/Q:152 #5.43/R:152 #5.44/S:152 #5.45/T:152 #5.46/U:152
+> #5.47/V:152 #5.48/W:152 #5.49/X:152 #5.50/Y:152 #5.51/Z:152 #5.52/a:152
+> #5.53/b:152 #5.54/c:152 #5.55/d:152 #5.56/e:152 #5.57/f:152 #5.58/g:152
+> #5.59/h:152 #5.60/i:152 #5.61/j:152 #5.62/k:152 #5.63/l:152 #5.64/m:152
+> #5.65/n:152 #5.66/o:152 #5.67/p:152 #5.68/q:152 #5.69/r:152 #5.70/s:152
+> #5.71/t:152 #5.72/u:152 #5.73/v:152 #5.74/w:152 #5.75/x:152 #5.76/y:152
+> #5.77/z:152
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:152 #5.2/1:152 #5.3/2:152 #5.4/3:152 #5.5/4:152 #5.6/5:152
+> #5.7/6:152 #5.8/7:152 #5.9/8:152 #5.10/9:152 #5.11/AA:152 #5.12/AB:152
+> #5.13/AC:152 #5.14/AD:152 #5.15/AE:152 #5.16/AF:152 #5.17/AG:152
+> #5.18/AH:152 #5.19/AI:152 #5.20/AJ:152 #5.21/AK:152 #5.22/AL:152
+> #5.23/AM:152 #5.24/AN:152 #5.25/AO:152 #5.26/AP:152 #5.27/B:152 #5.28/C:152
+> #5.29/D:152 #5.30/E:152 #5.31/F:152 #5.32/G:152 #5.33/H:152 #5.34/I:152
+> #5.35/J:152 #5.36/K:152 #5.37/L:152 #5.38/M:152 #5.39/N:152 #5.40/O:152
+> #5.41/P:152 #5.42/Q:152 #5.43/R:152 #5.44/S:152 #5.45/T:152 #5.46/U:152
+> #5.47/V:152 #5.48/W:152 #5.49/X:152 #5.50/Y:152 #5.51/Z:152 #5.52/a:152
+> #5.53/b:152 #5.54/c:152 #5.55/d:152 #5.56/e:152 #5.57/f:152 #5.58/g:152
+> #5.59/h:152 #5.60/i:152 #5.61/j:152 #5.62/k:152 #5.63/l:152 #5.64/m:152
+> #5.65/n:152 #5.66/o:152 #5.67/p:152 #5.68/q:152 #5.69/r:152 #5.70/s:152
+> #5.71/t:152 #5.72/u:152 #5.73/v:152 #5.74/w:152 #5.75/x:152 #5.76/y:152
+> #5.77/z:152
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [152] RMSD: 170.337
+> color sel red
+> select clear
+> select #5.3/2:19
+atoms, 6 bonds, 1 residue, 1 model selected
+> select #6
+models selected
+> select clear
+> select #5.38/M:152
+atoms, 5 bonds, 1 residue, 1 model selected
+> select clear
+> select #5.1/0:152 #5.2/1:152 #5.3/2:152 #5.4/3:152 #5.5/4:152 #5.6/5:152
+> #5.7/6:152 #5.8/7:152 #5.9/8:152 #5.10/9:152 #5.11/AA:152 #5.12/AB:152
+> #5.13/AC:152 #5.14/AD:152 #5.15/AE:152 #5.16/AF:152 #5.17/AG:152
+> #5.18/AH:152 #5.19/AI:152 #5.20/AJ:152 #5.21/AK:152 #5.22/AL:152
+> #5.23/AM:152 #5.24/AN:152 #5.25/AO:152 #5.26/AP:152 #5.27/B:152 #5.28/C:152
+> #5.29/D:152 #5.30/E:152 #5.31/F:152 #5.32/G:152 #5.33/H:152 #5.34/I:152
+> #5.35/J:152 #5.36/K:152 #5.37/L:152 #5.38/M:152 #5.39/N:152 #5.40/O:152
+> #5.41/P:152 #5.42/Q:152 #5.43/R:152 #5.44/S:152 #5.45/T:152 #5.46/U:152
+> #5.47/V:152 #5.48/W:152 #5.49/X:152 #5.50/Y:152 #5.51/Z:152 #5.52/a:152
+> #5.53/b:152 #5.54/c:152 #5.55/d:152 #5.56/e:152 #5.57/f:152 #5.58/g:152
+> #5.59/h:152 #5.60/i:152 #5.61/j:152 #5.62/k:152 #5.63/l:152 #5.64/m:152
+> #5.65/n:152 #5.66/o:152 #5.67/p:152 #5.68/q:152 #5.69/r:152 #5.70/s:152
+> #5.71/t:152 #5.72/u:152 #5.73/v:152 #5.74/w:152 #5.75/x:152 #5.76/y:152
+> #5.77/z:152
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:152 #5.2/1:152 #5.3/2:152 #5.4/3:152 #5.5/4:152 #5.6/5:152
+> #5.7/6:152 #5.8/7:152 #5.9/8:152 #5.10/9:152 #5.11/AA:152 #5.12/AB:152
+> #5.13/AC:152 #5.14/AD:152 #5.15/AE:152 #5.16/AF:152 #5.17/AG:152
+> #5.18/AH:152 #5.19/AI:152 #5.20/AJ:152 #5.21/AK:152 #5.22/AL:152
+> #5.23/AM:152 #5.24/AN:152 #5.25/AO:152 #5.26/AP:152 #5.27/B:152 #5.28/C:152
+> #5.29/D:152 #5.30/E:152 #5.31/F:152 #5.32/G:152 #5.33/H:152 #5.34/I:152
+> #5.35/J:152 #5.36/K:152 #5.37/L:152 #5.38/M:152 #5.39/N:152 #5.40/O:152
+> #5.41/P:152 #5.42/Q:152 #5.43/R:152 #5.44/S:152 #5.45/T:152 #5.46/U:152
+> #5.47/V:152 #5.48/W:152 #5.49/X:152 #5.50/Y:152 #5.51/Z:152 #5.52/a:152
+> #5.53/b:152 #5.54/c:152 #5.55/d:152 #5.56/e:152 #5.57/f:152 #5.58/g:152
+> #5.59/h:152 #5.60/i:152 #5.61/j:152 #5.62/k:152 #5.63/l:152 #5.64/m:152
+> #5.65/n:152 #5.66/o:152 #5.67/p:152 #5.68/q:152 #5.69/r:152 #5.70/s:152
+> #5.71/t:152 #5.72/u:152 #5.73/v:152 #5.74/w:152 #5.75/x:152 #5.76/y:152
+> #5.77/z:152
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [152] RMSD: 170.337
+> select #5.66/o:152
+atoms, 5 bonds, 1 residue, 1 model selected
+> color zone #6 near sel distance 9.4
+> color zone #6 near sel distance 9.3
+> color zone #6 near sel distance 9.2
+> color zone #6 near sel distance 9.1
+> color zone #6 near sel distance 9
+> color zone #6 near sel distance 8.9
+> color zone #6 near sel distance 8.8
+> color zone #6 near sel distance 8.7
+> color zone #6 near sel distance 8.6
+> color zone #6 near sel distance 8.5
+> color zone #6 near sel distance 8.4
+> color zone #6 near sel distance 8.3
+> color zone #6 near sel distance 8.2
+> color zone #6 near sel distance 8.1
+> color zone #6 near sel distance 8
+> color zone #6 near sel distance 7.9
+> color zone #6 near sel distance 7.8
+> color zone #6 near sel distance 7.7
+> color zone #6 near sel distance 7.6
+> color zone #6 near sel distance 7.5
+> color zone #6 near sel distance 7.4
+> color zone #6 near sel distance 7.3
+> color zone #6 near sel distance 7.2
+> color zone #6 near sel distance 7.1
+> color zone #6 near sel distance 7
+> color zone #6 near sel distance 6.9
+> color zone #6 near sel distance 6.8
+> color zone #6 near sel distance 6.7
+> color zone #6 near sel distance 6.6
+> color zone #6 near sel distance 6.5
+> color zone #6 near sel distance 6.6
+> color zone #6 near sel distance 6.7
+> color zone #6 near sel distance 6.8
+> volume splitbyzone #6
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 0 as #13.1, grid
+size 143,142,360, pixel 1.07, shown at level 0.5, step 1, values float32
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1 as #13.2, grid
+size 143,142,360, pixel 1.07, shown at level 0.5, step 1, values float32
+> hide #!13.1 models
+> close #13.1
+> select add #5
+atoms, 169015 bonds, 22022 residues, 78 models selected
+> select subtract #5
+Nothing selected
+> hide #!5 models
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1, density
+threshold 0.500000
+Showing 8 region surfaces
+watershed regions, grouped to 8 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map zone 1.seg - 8 regions, 8
+surfaces
+> select #14.1
+model selected
+Ungrouped to 3 regions
+> select clear
+> select add #14
+models selected
+> ui mousemode right "translate selected models"
+> view matrix models #14,1,0,0,0.72533,0,1,0,1.0824,0,0,1,-0.2948
+> select subtract #14
+Nothing selected
+> select add #13.2
+models selected
+> select subtract #13.2
+Nothing selected
+> select add #14
+models selected
+> view matrix models #14,1,0,0,0.62634,0,1,0,1.4193,0,0,1,-0.6186
+> show #!6 models
+> show #!5 models
+> hide #!5 models
+> hide #!6 models
+> view matrix models #14,1,0,0,0.81743,0,1,0,1.5569,0,0,1,-0.47505
+> select subtract #14
+Nothing selected
+> ui mousemode right select
+> select #14.11
+model selected
+> select add #14.10
+models selected
+Grouped 2 regions
+Grouped 8 regions
+> select clear
+> select #14.1
+model selected
+Saving 1 regions to mrc file...
+Opened S152_glycan.mrc as #19, grid size 9,11,10, pixel 1.07, shown at step 1,
+values float32
+Wrote S152_glycan.mrc
+> close #14
+> close #13
+> volume #19 level 0.055
+> color #19 #ff1721ff models
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/Td_DFlaB3_analysis.cxs
+> includeMaps true
+> show #!6 models
+> show #!5 models
+> color single #6
+> hide #!19 models
+> select #5.1/0:171 #5.2/1:171 #5.3/2:171 #5.4/3:171 #5.5/4:171 #5.6/5:171
+> #5.7/6:171 #5.8/7:171 #5.9/8:171 #5.10/9:171 #5.11/AA:171 #5.12/AB:171
+> #5.13/AC:171 #5.14/AD:171 #5.15/AE:171 #5.16/AF:171 #5.17/AG:171
+> #5.18/AH:171 #5.19/AI:171 #5.20/AJ:171 #5.21/AK:171 #5.22/AL:171
+> #5.23/AM:171 #5.24/AN:171 #5.25/AO:171 #5.26/AP:171 #5.27/B:171 #5.28/C:171
+> #5.29/D:171 #5.30/E:171 #5.31/F:171 #5.32/G:171 #5.33/H:171 #5.34/I:171
+> #5.35/J:171 #5.36/K:171 #5.37/L:171 #5.38/M:171 #5.39/N:171 #5.40/O:171
+> #5.41/P:171 #5.42/Q:171 #5.43/R:171 #5.44/S:171 #5.45/T:171 #5.46/U:171
+> #5.47/V:171 #5.48/W:171 #5.49/X:171 #5.50/Y:171 #5.51/Z:171 #5.52/a:171
+> #5.53/b:171 #5.54/c:171 #5.55/d:171 #5.56/e:171 #5.57/f:171 #5.58/g:171
+> #5.59/h:171 #5.60/i:171 #5.61/j:171 #5.62/k:171 #5.63/l:171 #5.64/m:171
+> #5.65/n:171 #5.66/o:171 #5.67/p:171 #5.68/q:171 #5.69/r:171 #5.70/s:171
+> #5.71/t:171 #5.72/u:171 #5.73/v:171 #5.74/w:171 #5.75/x:171 #5.76/y:171
+> #5.77/z:171
+atoms, 462 bonds, 77 residues, 77 models selected
+> select #5.1/0:171 #5.2/1:171 #5.3/2:171 #5.4/3:171 #5.5/4:171 #5.6/5:171
+> #5.7/6:171 #5.8/7:171 #5.9/8:171 #5.10/9:171 #5.11/AA:171 #5.12/AB:171
+> #5.13/AC:171 #5.14/AD:171 #5.15/AE:171 #5.16/AF:171 #5.17/AG:171
+> #5.18/AH:171 #5.19/AI:171 #5.20/AJ:171 #5.21/AK:171 #5.22/AL:171
+> #5.23/AM:171 #5.24/AN:171 #5.25/AO:171 #5.26/AP:171 #5.27/B:171 #5.28/C:171
+> #5.29/D:171 #5.30/E:171 #5.31/F:171 #5.32/G:171 #5.33/H:171 #5.34/I:171
+> #5.35/J:171 #5.36/K:171 #5.37/L:171 #5.38/M:171 #5.39/N:171 #5.40/O:171
+> #5.41/P:171 #5.42/Q:171 #5.43/R:171 #5.44/S:171 #5.45/T:171 #5.46/U:171
+> #5.47/V:171 #5.48/W:171 #5.49/X:171 #5.50/Y:171 #5.51/Z:171 #5.52/a:171
+> #5.53/b:171 #5.54/c:171 #5.55/d:171 #5.56/e:171 #5.57/f:171 #5.58/g:171
+> #5.59/h:171 #5.60/i:171 #5.61/j:171 #5.62/k:171 #5.63/l:171 #5.64/m:171
+> #5.65/n:171 #5.66/o:171 #5.67/p:171 #5.68/q:171 #5.69/r:171 #5.70/s:171
+> #5.71/t:171 #5.72/u:171 #5.73/v:171 #5.74/w:171 #5.75/x:171 #5.76/y:171
+> #5.77/z:171
+atoms, 462 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [171] RMSD: 169.734
+> color sel red
+> select clear
+> select #5.64/m:171
+atoms, 6 bonds, 1 residue, 1 model selected
+> color zone #6 near sel distance 6.8
+> color zone #6 near sel distance 8
+> color zone #6 near sel distance 9
+> color zone #6 near sel distance 9.1
+> color zone #6 near sel distance 9.2
+> color zone #6 near sel distance 9.3
+> color zone #6 near sel distance 9.4
+> color zone #6 near sel distance 9.5
+> color zone #6 near sel distance 9.6
+> color zone #6 near sel distance 9.7
+> color zone #6 near sel distance 9.8
+> color zone #6 near sel distance 9.9
+> color zone #6 near sel distance 10
+> color zone #6 near sel distance 11
+> volume splitbyzone #6
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 0 as #13.1, grid
+size 143,142,360, pixel 1.07, shown at level 0.5, step 1, values float32
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1 as #13.2, grid
+size 143,142,360, pixel 1.07, shown at level 0.5, step 1, values float32
+> close #13.1
+> select add #5
+atoms, 169015 bonds, 22022 residues, 78 models selected
+> select subtract #5
+Nothing selected
+> select add #5
+atoms, 169015 bonds, 22022 residues, 78 models selected
+> hide #!5 models
+> select subtract #5
+Nothing selected
+Segmenting J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone 1, density
+threshold 0.500000
+Showing 27 region surfaces
+watershed regions, grouped to 27 regions
+Showing J1272_Td_DFlaB3_3.51A_sheath_emhanced_map zone 1.seg - 27 regions, 27
+surfaces
+> select clear
+> select add #14
+models selected
+> ui mousemode right "translate selected models"
+> view matrix models #14,1,0,0,0.51667,0,1,0,0.7047,0,0,1,-0.15409
+> view matrix models #14,1,0,0,0.32612,0,1,0,1.2029,0,0,1,-0.40355
+> view matrix models #14,1,0,0,0.21953,0,1,0,1.169,0,0,1,-0.41482
+> ui mousemode right select
+> select clear
+> select #14.1
+model selected
+Grouped 26 regions
+> select clear
+> select #14.1
+model selected
+Saving 1 regions to mrc file...
+Opened T171_glycan.mrc as #20, grid size 10,12,11, pixel 1.07, shown at step
+, values float32
+Wrote T171_glycan.mrc
+> select clear
+> close #13
+> close #14
+> color #20 #ff1721ff models
+> volume #20 level 0.055
+> show #!19 models
+> show #!18 models
+> show #!17 models
+> show #!15 models
+> show #!5 models
+> show #!6 models
+> color single #6
+> select add #5
+atoms, 169015 bonds, 22022 residues, 78 models selected
+Alignment identifier is 1
+> select clear
+> rename #16 id #13d
+Invalid "id" argument: Expected an integer
+> rename #16 id #13
+> rename #15 id #16
+> show #13 models
+> hide #13 models
+> select #5.1/0:115 #5.2/1:115 #5.3/2:115 #5.4/3:115 #5.5/4:115 #5.6/5:115
+> #5.7/6:115 #5.8/7:115 #5.9/8:115 #5.10/9:115 #5.11/AA:115 #5.12/AB:115
+> #5.13/AC:115 #5.14/AD:115 #5.15/AE:115 #5.16/AF:115 #5.17/AG:115
+> #5.18/AH:115 #5.19/AI:115 #5.20/AJ:115 #5.21/AK:115 #5.22/AL:115
+> #5.23/AM:115 #5.24/AN:115 #5.25/AO:115 #5.26/AP:115 #5.27/B:115 #5.28/C:115
+> #5.29/D:115 #5.30/E:115 #5.31/F:115 #5.32/G:115 #5.33/H:115 #5.34/I:115
+> #5.35/J:115 #5.36/K:115 #5.37/L:115 #5.38/M:115 #5.39/N:115 #5.40/O:115
+> #5.41/P:115 #5.42/Q:115 #5.43/R:115 #5.44/S:115 #5.45/T:115 #5.46/U:115
+> #5.47/V:115 #5.48/W:115 #5.49/X:115 #5.50/Y:115 #5.51/Z:115 #5.52/a:115
+> #5.53/b:115 #5.54/c:115 #5.55/d:115 #5.56/e:115 #5.57/f:115 #5.58/g:115
+> #5.59/h:115 #5.60/i:115 #5.61/j:115 #5.62/k:115 #5.63/l:115 #5.64/m:115
+> #5.65/n:115 #5.66/o:115 #5.67/p:115 #5.68/q:115 #5.69/r:115 #5.70/s:115
+> #5.71/t:115 #5.72/u:115 #5.73/v:115 #5.74/w:115 #5.75/x:115 #5.76/y:115
+> #5.77/z:115
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:115 #5.2/1:115 #5.3/2:115 #5.4/3:115 #5.5/4:115 #5.6/5:115
+> #5.7/6:115 #5.8/7:115 #5.9/8:115 #5.10/9:115 #5.11/AA:115 #5.12/AB:115
+> #5.13/AC:115 #5.14/AD:115 #5.15/AE:115 #5.16/AF:115 #5.17/AG:115
+> #5.18/AH:115 #5.19/AI:115 #5.20/AJ:115 #5.21/AK:115 #5.22/AL:115
+> #5.23/AM:115 #5.24/AN:115 #5.25/AO:115 #5.26/AP:115 #5.27/B:115 #5.28/C:115
+> #5.29/D:115 #5.30/E:115 #5.31/F:115 #5.32/G:115 #5.33/H:115 #5.34/I:115
+> #5.35/J:115 #5.36/K:115 #5.37/L:115 #5.38/M:115 #5.39/N:115 #5.40/O:115
+> #5.41/P:115 #5.42/Q:115 #5.43/R:115 #5.44/S:115 #5.45/T:115 #5.46/U:115
+> #5.47/V:115 #5.48/W:115 #5.49/X:115 #5.50/Y:115 #5.51/Z:115 #5.52/a:115
+> #5.53/b:115 #5.54/c:115 #5.55/d:115 #5.56/e:115 #5.57/f:115 #5.58/g:115
+> #5.59/h:115 #5.60/i:115 #5.61/j:115 #5.62/k:115 #5.63/l:115 #5.64/m:115
+> #5.65/n:115 #5.66/o:115 #5.67/p:115 #5.68/q:115 #5.69/r:115 #5.70/s:115
+> #5.71/t:115 #5.72/u:115 #5.73/v:115 #5.74/w:115 #5.75/x:115 #5.76/y:115
+> #5.77/z:115
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [115] RMSD: 167.880
+> select #5.1/0:126 #5.2/1:126 #5.3/2:126 #5.4/3:126 #5.5/4:126 #5.6/5:126
+> #5.7/6:126 #5.8/7:126 #5.9/8:126 #5.10/9:126 #5.11/AA:126 #5.12/AB:126
+> #5.13/AC:126 #5.14/AD:126 #5.15/AE:126 #5.16/AF:126 #5.17/AG:126
+> #5.18/AH:126 #5.19/AI:126 #5.20/AJ:126 #5.21/AK:126 #5.22/AL:126
+> #5.23/AM:126 #5.24/AN:126 #5.25/AO:126 #5.26/AP:126 #5.27/B:126 #5.28/C:126
+> #5.29/D:126 #5.30/E:126 #5.31/F:126 #5.32/G:126 #5.33/H:126 #5.34/I:126
+> #5.35/J:126 #5.36/K:126 #5.37/L:126 #5.38/M:126 #5.39/N:126 #5.40/O:126
+> #5.41/P:126 #5.42/Q:126 #5.43/R:126 #5.44/S:126 #5.45/T:126 #5.46/U:126
+> #5.47/V:126 #5.48/W:126 #5.49/X:126 #5.50/Y:126 #5.51/Z:126 #5.52/a:126
+> #5.53/b:126 #5.54/c:126 #5.55/d:126 #5.56/e:126 #5.57/f:126 #5.58/g:126
+> #5.59/h:126 #5.60/i:126 #5.61/j:126 #5.62/k:126 #5.63/l:126 #5.64/m:126
+> #5.65/n:126 #5.66/o:126 #5.67/p:126 #5.68/q:126 #5.69/r:126 #5.70/s:126
+> #5.71/t:126 #5.72/u:126 #5.73/v:126 #5.74/w:126 #5.75/x:126 #5.76/y:126
+> #5.77/z:126
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:126 #5.2/1:126 #5.3/2:126 #5.4/3:126 #5.5/4:126 #5.6/5:126
+> #5.7/6:126 #5.8/7:126 #5.9/8:126 #5.10/9:126 #5.11/AA:126 #5.12/AB:126
+> #5.13/AC:126 #5.14/AD:126 #5.15/AE:126 #5.16/AF:126 #5.17/AG:126
+> #5.18/AH:126 #5.19/AI:126 #5.20/AJ:126 #5.21/AK:126 #5.22/AL:126
+> #5.23/AM:126 #5.24/AN:126 #5.25/AO:126 #5.26/AP:126 #5.27/B:126 #5.28/C:126
+> #5.29/D:126 #5.30/E:126 #5.31/F:126 #5.32/G:126 #5.33/H:126 #5.34/I:126
+> #5.35/J:126 #5.36/K:126 #5.37/L:126 #5.38/M:126 #5.39/N:126 #5.40/O:126
+> #5.41/P:126 #5.42/Q:126 #5.43/R:126 #5.44/S:126 #5.45/T:126 #5.46/U:126
+> #5.47/V:126 #5.48/W:126 #5.49/X:126 #5.50/Y:126 #5.51/Z:126 #5.52/a:126
+> #5.53/b:126 #5.54/c:126 #5.55/d:126 #5.56/e:126 #5.57/f:126 #5.58/g:126
+> #5.59/h:126 #5.60/i:126 #5.61/j:126 #5.62/k:126 #5.63/l:126 #5.64/m:126
+> #5.65/n:126 #5.66/o:126 #5.67/p:126 #5.68/q:126 #5.69/r:126 #5.70/s:126
+> #5.71/t:126 #5.72/u:126 #5.73/v:126 #5.74/w:126 #5.75/x:126 #5.76/y:126
+> #5.77/z:126
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [126] RMSD: 167.782
+> color sel purple
+> color sel magenta
+> select #5.1/0:137 #5.2/1:137 #5.3/2:137 #5.4/3:137 #5.5/4:137 #5.6/5:137
+> #5.7/6:137 #5.8/7:137 #5.9/8:137 #5.10/9:137 #5.11/AA:137 #5.12/AB:137
+> #5.13/AC:137 #5.14/AD:137 #5.15/AE:137 #5.16/AF:137 #5.17/AG:137
+> #5.18/AH:137 #5.19/AI:137 #5.20/AJ:137 #5.21/AK:137 #5.22/AL:137
+> #5.23/AM:137 #5.24/AN:137 #5.25/AO:137 #5.26/AP:137 #5.27/B:137 #5.28/C:137
+> #5.29/D:137 #5.30/E:137 #5.31/F:137 #5.32/G:137 #5.33/H:137 #5.34/I:137
+> #5.35/J:137 #5.36/K:137 #5.37/L:137 #5.38/M:137 #5.39/N:137 #5.40/O:137
+> #5.41/P:137 #5.42/Q:137 #5.43/R:137 #5.44/S:137 #5.45/T:137 #5.46/U:137
+> #5.47/V:137 #5.48/W:137 #5.49/X:137 #5.50/Y:137 #5.51/Z:137 #5.52/a:137
+> #5.53/b:137 #5.54/c:137 #5.55/d:137 #5.56/e:137 #5.57/f:137 #5.58/g:137
+> #5.59/h:137 #5.60/i:137 #5.61/j:137 #5.62/k:137 #5.63/l:137 #5.64/m:137
+> #5.65/n:137 #5.66/o:137 #5.67/p:137 #5.68/q:137 #5.69/r:137 #5.70/s:137
+> #5.71/t:137 #5.72/u:137 #5.73/v:137 #5.74/w:137 #5.75/x:137 #5.76/y:137
+> #5.77/z:137
+atoms, 462 bonds, 77 residues, 77 models selected
+> select #5.1/0:137 #5.2/1:137 #5.3/2:137 #5.4/3:137 #5.5/4:137 #5.6/5:137
+> #5.7/6:137 #5.8/7:137 #5.9/8:137 #5.10/9:137 #5.11/AA:137 #5.12/AB:137
+> #5.13/AC:137 #5.14/AD:137 #5.15/AE:137 #5.16/AF:137 #5.17/AG:137
+> #5.18/AH:137 #5.19/AI:137 #5.20/AJ:137 #5.21/AK:137 #5.22/AL:137
+> #5.23/AM:137 #5.24/AN:137 #5.25/AO:137 #5.26/AP:137 #5.27/B:137 #5.28/C:137
+> #5.29/D:137 #5.30/E:137 #5.31/F:137 #5.32/G:137 #5.33/H:137 #5.34/I:137
+> #5.35/J:137 #5.36/K:137 #5.37/L:137 #5.38/M:137 #5.39/N:137 #5.40/O:137
+> #5.41/P:137 #5.42/Q:137 #5.43/R:137 #5.44/S:137 #5.45/T:137 #5.46/U:137
+> #5.47/V:137 #5.48/W:137 #5.49/X:137 #5.50/Y:137 #5.51/Z:137 #5.52/a:137
+> #5.53/b:137 #5.54/c:137 #5.55/d:137 #5.56/e:137 #5.57/f:137 #5.58/g:137
+> #5.59/h:137 #5.60/i:137 #5.61/j:137 #5.62/k:137 #5.63/l:137 #5.64/m:137
+> #5.65/n:137 #5.66/o:137 #5.67/p:137 #5.68/q:137 #5.69/r:137 #5.70/s:137
+> #5.71/t:137 #5.72/u:137 #5.73/v:137 #5.74/w:137 #5.75/x:137 #5.76/y:137
+> #5.77/z:137
+atoms, 462 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [137] RMSD: 169.412
+> color sel cyan
+> select #5.1/0:152 #5.2/1:152 #5.3/2:152 #5.4/3:152 #5.5/4:152 #5.6/5:152
+> #5.7/6:152 #5.8/7:152 #5.9/8:152 #5.10/9:152 #5.11/AA:152 #5.12/AB:152
+> #5.13/AC:152 #5.14/AD:152 #5.15/AE:152 #5.16/AF:152 #5.17/AG:152
+> #5.18/AH:152 #5.19/AI:152 #5.20/AJ:152 #5.21/AK:152 #5.22/AL:152
+> #5.23/AM:152 #5.24/AN:152 #5.25/AO:152 #5.26/AP:152 #5.27/B:152 #5.28/C:152
+> #5.29/D:152 #5.30/E:152 #5.31/F:152 #5.32/G:152 #5.33/H:152 #5.34/I:152
+> #5.35/J:152 #5.36/K:152 #5.37/L:152 #5.38/M:152 #5.39/N:152 #5.40/O:152
+> #5.41/P:152 #5.42/Q:152 #5.43/R:152 #5.44/S:152 #5.45/T:152 #5.46/U:152
+> #5.47/V:152 #5.48/W:152 #5.49/X:152 #5.50/Y:152 #5.51/Z:152 #5.52/a:152
+> #5.53/b:152 #5.54/c:152 #5.55/d:152 #5.56/e:152 #5.57/f:152 #5.58/g:152
+> #5.59/h:152 #5.60/i:152 #5.61/j:152 #5.62/k:152 #5.63/l:152 #5.64/m:152
+> #5.65/n:152 #5.66/o:152 #5.67/p:152 #5.68/q:152 #5.69/r:152 #5.70/s:152
+> #5.71/t:152 #5.72/u:152 #5.73/v:152 #5.74/w:152 #5.75/x:152 #5.76/y:152
+> #5.77/z:152
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:152 #5.2/1:152 #5.3/2:152 #5.4/3:152 #5.5/4:152 #5.6/5:152
+> #5.7/6:152 #5.8/7:152 #5.9/8:152 #5.10/9:152 #5.11/AA:152 #5.12/AB:152
+> #5.13/AC:152 #5.14/AD:152 #5.15/AE:152 #5.16/AF:152 #5.17/AG:152
+> #5.18/AH:152 #5.19/AI:152 #5.20/AJ:152 #5.21/AK:152 #5.22/AL:152
+> #5.23/AM:152 #5.24/AN:152 #5.25/AO:152 #5.26/AP:152 #5.27/B:152 #5.28/C:152
+> #5.29/D:152 #5.30/E:152 #5.31/F:152 #5.32/G:152 #5.33/H:152 #5.34/I:152
+> #5.35/J:152 #5.36/K:152 #5.37/L:152 #5.38/M:152 #5.39/N:152 #5.40/O:152
+> #5.41/P:152 #5.42/Q:152 #5.43/R:152 #5.44/S:152 #5.45/T:152 #5.46/U:152
+> #5.47/V:152 #5.48/W:152 #5.49/X:152 #5.50/Y:152 #5.51/Z:152 #5.52/a:152
+> #5.53/b:152 #5.54/c:152 #5.55/d:152 #5.56/e:152 #5.57/f:152 #5.58/g:152
+> #5.59/h:152 #5.60/i:152 #5.61/j:152 #5.62/k:152 #5.63/l:152 #5.64/m:152
+> #5.65/n:152 #5.66/o:152 #5.67/p:152 #5.68/q:152 #5.69/r:152 #5.70/s:152
+> #5.71/t:152 #5.72/u:152 #5.73/v:152 #5.74/w:152 #5.75/x:152 #5.76/y:152
+> #5.77/z:152
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [152] RMSD: 170.337
+> color sel forest green
+> color sel cornflower blue
+> select clear
+> select #5.1/0:152 #5.2/1:152 #5.3/2:152 #5.4/3:152 #5.5/4:152 #5.6/5:152
+> #5.7/6:152 #5.8/7:152 #5.9/8:152 #5.10/9:152 #5.11/AA:152 #5.12/AB:152
+> #5.13/AC:152 #5.14/AD:152 #5.15/AE:152 #5.16/AF:152 #5.17/AG:152
+> #5.18/AH:152 #5.19/AI:152 #5.20/AJ:152 #5.21/AK:152 #5.22/AL:152
+> #5.23/AM:152 #5.24/AN:152 #5.25/AO:152 #5.26/AP:152 #5.27/B:152 #5.28/C:152
+> #5.29/D:152 #5.30/E:152 #5.31/F:152 #5.32/G:152 #5.33/H:152 #5.34/I:152
+> #5.35/J:152 #5.36/K:152 #5.37/L:152 #5.38/M:152 #5.39/N:152 #5.40/O:152
+> #5.41/P:152 #5.42/Q:152 #5.43/R:152 #5.44/S:152 #5.45/T:152 #5.46/U:152
+> #5.47/V:152 #5.48/W:152 #5.49/X:152 #5.50/Y:152 #5.51/Z:152 #5.52/a:152
+> #5.53/b:152 #5.54/c:152 #5.55/d:152 #5.56/e:152 #5.57/f:152 #5.58/g:152
+> #5.59/h:152 #5.60/i:152 #5.61/j:152 #5.62/k:152 #5.63/l:152 #5.64/m:152
+> #5.65/n:152 #5.66/o:152 #5.67/p:152 #5.68/q:152 #5.69/r:152 #5.70/s:152
+> #5.71/t:152 #5.72/u:152 #5.73/v:152 #5.74/w:152 #5.75/x:152 #5.76/y:152
+> #5.77/z:152
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:152 #5.2/1:152 #5.3/2:152 #5.4/3:152 #5.5/4:152 #5.6/5:152
+> #5.7/6:152 #5.8/7:152 #5.9/8:152 #5.10/9:152 #5.11/AA:152 #5.12/AB:152
+> #5.13/AC:152 #5.14/AD:152 #5.15/AE:152 #5.16/AF:152 #5.17/AG:152
+> #5.18/AH:152 #5.19/AI:152 #5.20/AJ:152 #5.21/AK:152 #5.22/AL:152
+> #5.23/AM:152 #5.24/AN:152 #5.25/AO:152 #5.26/AP:152 #5.27/B:152 #5.28/C:152
+> #5.29/D:152 #5.30/E:152 #5.31/F:152 #5.32/G:152 #5.33/H:152 #5.34/I:152
+> #5.35/J:152 #5.36/K:152 #5.37/L:152 #5.38/M:152 #5.39/N:152 #5.40/O:152
+> #5.41/P:152 #5.42/Q:152 #5.43/R:152 #5.44/S:152 #5.45/T:152 #5.46/U:152
+> #5.47/V:152 #5.48/W:152 #5.49/X:152 #5.50/Y:152 #5.51/Z:152 #5.52/a:152
+> #5.53/b:152 #5.54/c:152 #5.55/d:152 #5.56/e:152 #5.57/f:152 #5.58/g:152
+> #5.59/h:152 #5.60/i:152 #5.61/j:152 #5.62/k:152 #5.63/l:152 #5.64/m:152
+> #5.65/n:152 #5.66/o:152 #5.67/p:152 #5.68/q:152 #5.69/r:152 #5.70/s:152
+> #5.71/t:152 #5.72/u:152 #5.73/v:152 #5.74/w:152 #5.75/x:152 #5.76/y:152
+> #5.77/z:152
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [152] RMSD: 170.337
+> color sel cornflower blue
+> color sel blue
+> select clear
+> select #5.1/0:152 #5.2/1:152 #5.3/2:152 #5.4/3:152 #5.5/4:152 #5.6/5:152
+> #5.7/6:152 #5.8/7:152 #5.9/8:152 #5.10/9:152 #5.11/AA:152 #5.12/AB:152
+> #5.13/AC:152 #5.14/AD:152 #5.15/AE:152 #5.16/AF:152 #5.17/AG:152
+> #5.18/AH:152 #5.19/AI:152 #5.20/AJ:152 #5.21/AK:152 #5.22/AL:152
+> #5.23/AM:152 #5.24/AN:152 #5.25/AO:152 #5.26/AP:152 #5.27/B:152 #5.28/C:152
+> #5.29/D:152 #5.30/E:152 #5.31/F:152 #5.32/G:152 #5.33/H:152 #5.34/I:152
+> #5.35/J:152 #5.36/K:152 #5.37/L:152 #5.38/M:152 #5.39/N:152 #5.40/O:152
+> #5.41/P:152 #5.42/Q:152 #5.43/R:152 #5.44/S:152 #5.45/T:152 #5.46/U:152
+> #5.47/V:152 #5.48/W:152 #5.49/X:152 #5.50/Y:152 #5.51/Z:152 #5.52/a:152
+> #5.53/b:152 #5.54/c:152 #5.55/d:152 #5.56/e:152 #5.57/f:152 #5.58/g:152
+> #5.59/h:152 #5.60/i:152 #5.61/j:152 #5.62/k:152 #5.63/l:152 #5.64/m:152
+> #5.65/n:152 #5.66/o:152 #5.67/p:152 #5.68/q:152 #5.69/r:152 #5.70/s:152
+> #5.71/t:152 #5.72/u:152 #5.73/v:152 #5.74/w:152 #5.75/x:152 #5.76/y:152
+> #5.77/z:152
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:152 #5.2/1:152 #5.3/2:152 #5.4/3:152 #5.5/4:152 #5.6/5:152
+> #5.7/6:152 #5.8/7:152 #5.9/8:152 #5.10/9:152 #5.11/AA:152 #5.12/AB:152
+> #5.13/AC:152 #5.14/AD:152 #5.15/AE:152 #5.16/AF:152 #5.17/AG:152
+> #5.18/AH:152 #5.19/AI:152 #5.20/AJ:152 #5.21/AK:152 #5.22/AL:152
+> #5.23/AM:152 #5.24/AN:152 #5.25/AO:152 #5.26/AP:152 #5.27/B:152 #5.28/C:152
+> #5.29/D:152 #5.30/E:152 #5.31/F:152 #5.32/G:152 #5.33/H:152 #5.34/I:152
+> #5.35/J:152 #5.36/K:152 #5.37/L:152 #5.38/M:152 #5.39/N:152 #5.40/O:152
+> #5.41/P:152 #5.42/Q:152 #5.43/R:152 #5.44/S:152 #5.45/T:152 #5.46/U:152
+> #5.47/V:152 #5.48/W:152 #5.49/X:152 #5.50/Y:152 #5.51/Z:152 #5.52/a:152
+> #5.53/b:152 #5.54/c:152 #5.55/d:152 #5.56/e:152 #5.57/f:152 #5.58/g:152
+> #5.59/h:152 #5.60/i:152 #5.61/j:152 #5.62/k:152 #5.63/l:152 #5.64/m:152
+> #5.65/n:152 #5.66/o:152 #5.67/p:152 #5.68/q:152 #5.69/r:152 #5.70/s:152
+> #5.71/t:152 #5.72/u:152 #5.73/v:152 #5.74/w:152 #5.75/x:152 #5.76/y:152
+> #5.77/z:152
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [152] RMSD: 170.337
+> color sel medium blue
+> select clear
+> select #5.1/0:152 #5.2/1:152 #5.3/2:152 #5.4/3:152 #5.5/4:152 #5.6/5:152
+> #5.7/6:152 #5.8/7:152 #5.9/8:152 #5.10/9:152 #5.11/AA:152 #5.12/AB:152
+> #5.13/AC:152 #5.14/AD:152 #5.15/AE:152 #5.16/AF:152 #5.17/AG:152
+> #5.18/AH:152 #5.19/AI:152 #5.20/AJ:152 #5.21/AK:152 #5.22/AL:152
+> #5.23/AM:152 #5.24/AN:152 #5.25/AO:152 #5.26/AP:152 #5.27/B:152 #5.28/C:152
+> #5.29/D:152 #5.30/E:152 #5.31/F:152 #5.32/G:152 #5.33/H:152 #5.34/I:152
+> #5.35/J:152 #5.36/K:152 #5.37/L:152 #5.38/M:152 #5.39/N:152 #5.40/O:152
+> #5.41/P:152 #5.42/Q:152 #5.43/R:152 #5.44/S:152 #5.45/T:152 #5.46/U:152
+> #5.47/V:152 #5.48/W:152 #5.49/X:152 #5.50/Y:152 #5.51/Z:152 #5.52/a:152
+> #5.53/b:152 #5.54/c:152 #5.55/d:152 #5.56/e:152 #5.57/f:152 #5.58/g:152
+> #5.59/h:152 #5.60/i:152 #5.61/j:152 #5.62/k:152 #5.63/l:152 #5.64/m:152
+> #5.65/n:152 #5.66/o:152 #5.67/p:152 #5.68/q:152 #5.69/r:152 #5.70/s:152
+> #5.71/t:152 #5.72/u:152 #5.73/v:152 #5.74/w:152 #5.75/x:152 #5.76/y:152
+> #5.77/z:152
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:152 #5.2/1:152 #5.3/2:152 #5.4/3:152 #5.5/4:152 #5.6/5:152
+> #5.7/6:152 #5.8/7:152 #5.9/8:152 #5.10/9:152 #5.11/AA:152 #5.12/AB:152
+> #5.13/AC:152 #5.14/AD:152 #5.15/AE:152 #5.16/AF:152 #5.17/AG:152
+> #5.18/AH:152 #5.19/AI:152 #5.20/AJ:152 #5.21/AK:152 #5.22/AL:152
+> #5.23/AM:152 #5.24/AN:152 #5.25/AO:152 #5.26/AP:152 #5.27/B:152 #5.28/C:152
+> #5.29/D:152 #5.30/E:152 #5.31/F:152 #5.32/G:152 #5.33/H:152 #5.34/I:152
+> #5.35/J:152 #5.36/K:152 #5.37/L:152 #5.38/M:152 #5.39/N:152 #5.40/O:152
+> #5.41/P:152 #5.42/Q:152 #5.43/R:152 #5.44/S:152 #5.45/T:152 #5.46/U:152
+> #5.47/V:152 #5.48/W:152 #5.49/X:152 #5.50/Y:152 #5.51/Z:152 #5.52/a:152
+> #5.53/b:152 #5.54/c:152 #5.55/d:152 #5.56/e:152 #5.57/f:152 #5.58/g:152
+> #5.59/h:152 #5.60/i:152 #5.61/j:152 #5.62/k:152 #5.63/l:152 #5.64/m:152
+> #5.65/n:152 #5.66/o:152 #5.67/p:152 #5.68/q:152 #5.69/r:152 #5.70/s:152
+> #5.71/t:152 #5.72/u:152 #5.73/v:152 #5.74/w:152 #5.75/x:152 #5.76/y:152
+> #5.77/z:152
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [152] RMSD: 170.337
+> color sel light sea green
+> select clear
+> select #5.1/0:171 #5.2/1:171 #5.3/2:171 #5.4/3:171 #5.5/4:171 #5.6/5:171
+> #5.7/6:171 #5.8/7:171 #5.9/8:171 #5.10/9:171 #5.11/AA:171 #5.12/AB:171
+> #5.13/AC:171 #5.14/AD:171 #5.15/AE:171 #5.16/AF:171 #5.17/AG:171
+> #5.18/AH:171 #5.19/AI:171 #5.20/AJ:171 #5.21/AK:171 #5.22/AL:171
+> #5.23/AM:171 #5.24/AN:171 #5.25/AO:171 #5.26/AP:171 #5.27/B:171 #5.28/C:171
+> #5.29/D:171 #5.30/E:171 #5.31/F:171 #5.32/G:171 #5.33/H:171 #5.34/I:171
+> #5.35/J:171 #5.36/K:171 #5.37/L:171 #5.38/M:171 #5.39/N:171 #5.40/O:171
+> #5.41/P:171 #5.42/Q:171 #5.43/R:171 #5.44/S:171 #5.45/T:171 #5.46/U:171
+> #5.47/V:171 #5.48/W:171 #5.49/X:171 #5.50/Y:171 #5.51/Z:171 #5.52/a:171
+> #5.53/b:171 #5.54/c:171 #5.55/d:171 #5.56/e:171 #5.57/f:171 #5.58/g:171
+> #5.59/h:171 #5.60/i:171 #5.61/j:171 #5.62/k:171 #5.63/l:171 #5.64/m:171
+> #5.65/n:171 #5.66/o:171 #5.67/p:171 #5.68/q:171 #5.69/r:171 #5.70/s:171
+> #5.71/t:171 #5.72/u:171 #5.73/v:171 #5.74/w:171 #5.75/x:171 #5.76/y:171
+> #5.77/z:171
+atoms, 462 bonds, 77 residues, 77 models selected
+> select #5.1/0:171 #5.2/1:171 #5.3/2:171 #5.4/3:171 #5.5/4:171 #5.6/5:171
+> #5.7/6:171 #5.8/7:171 #5.9/8:171 #5.10/9:171 #5.11/AA:171 #5.12/AB:171
+> #5.13/AC:171 #5.14/AD:171 #5.15/AE:171 #5.16/AF:171 #5.17/AG:171
+> #5.18/AH:171 #5.19/AI:171 #5.20/AJ:171 #5.21/AK:171 #5.22/AL:171
+> #5.23/AM:171 #5.24/AN:171 #5.25/AO:171 #5.26/AP:171 #5.27/B:171 #5.28/C:171
+> #5.29/D:171 #5.30/E:171 #5.31/F:171 #5.32/G:171 #5.33/H:171 #5.34/I:171
+> #5.35/J:171 #5.36/K:171 #5.37/L:171 #5.38/M:171 #5.39/N:171 #5.40/O:171
+> #5.41/P:171 #5.42/Q:171 #5.43/R:171 #5.44/S:171 #5.45/T:171 #5.46/U:171
+> #5.47/V:171 #5.48/W:171 #5.49/X:171 #5.50/Y:171 #5.51/Z:171 #5.52/a:171
+> #5.53/b:171 #5.54/c:171 #5.55/d:171 #5.56/e:171 #5.57/f:171 #5.58/g:171
+> #5.59/h:171 #5.60/i:171 #5.61/j:171 #5.62/k:171 #5.63/l:171 #5.64/m:171
+> #5.65/n:171 #5.66/o:171 #5.67/p:171 #5.68/q:171 #5.69/r:171 #5.70/s:171
+> #5.71/t:171 #5.72/u:171 #5.73/v:171 #5.74/w:171 #5.75/x:171 #5.76/y:171
+> #5.77/z:171
+atoms, 462 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [171] RMSD: 169.734
+> color sel lime
+> select clear
+> color #20 #a9fab5ff models
+> select #5.1/0:152 #5.2/1:152 #5.3/2:152 #5.4/3:152 #5.5/4:152 #5.6/5:152
+> #5.7/6:152 #5.8/7:152 #5.9/8:152 #5.10/9:152 #5.11/AA:152 #5.12/AB:152
+> #5.13/AC:152 #5.14/AD:152 #5.15/AE:152 #5.16/AF:152 #5.17/AG:152
+> #5.18/AH:152 #5.19/AI:152 #5.20/AJ:152 #5.21/AK:152 #5.22/AL:152
+> #5.23/AM:152 #5.24/AN:152 #5.25/AO:152 #5.26/AP:152 #5.27/B:152 #5.28/C:152
+> #5.29/D:152 #5.30/E:152 #5.31/F:152 #5.32/G:152 #5.33/H:152 #5.34/I:152
+> #5.35/J:152 #5.36/K:152 #5.37/L:152 #5.38/M:152 #5.39/N:152 #5.40/O:152
+> #5.41/P:152 #5.42/Q:152 #5.43/R:152 #5.44/S:152 #5.45/T:152 #5.46/U:152
+> #5.47/V:152 #5.48/W:152 #5.49/X:152 #5.50/Y:152 #5.51/Z:152 #5.52/a:152
+> #5.53/b:152 #5.54/c:152 #5.55/d:152 #5.56/e:152 #5.57/f:152 #5.58/g:152
+> #5.59/h:152 #5.60/i:152 #5.61/j:152 #5.62/k:152 #5.63/l:152 #5.64/m:152
+> #5.65/n:152 #5.66/o:152 #5.67/p:152 #5.68/q:152 #5.69/r:152 #5.70/s:152
+> #5.71/t:152 #5.72/u:152 #5.73/v:152 #5.74/w:152 #5.75/x:152 #5.76/y:152
+> #5.77/z:152
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:152 #5.2/1:152 #5.3/2:152 #5.4/3:152 #5.5/4:152 #5.6/5:152
+> #5.7/6:152 #5.8/7:152 #5.9/8:152 #5.10/9:152 #5.11/AA:152 #5.12/AB:152
+> #5.13/AC:152 #5.14/AD:152 #5.15/AE:152 #5.16/AF:152 #5.17/AG:152
+> #5.18/AH:152 #5.19/AI:152 #5.20/AJ:152 #5.21/AK:152 #5.22/AL:152
+> #5.23/AM:152 #5.24/AN:152 #5.25/AO:152 #5.26/AP:152 #5.27/B:152 #5.28/C:152
+> #5.29/D:152 #5.30/E:152 #5.31/F:152 #5.32/G:152 #5.33/H:152 #5.34/I:152
+> #5.35/J:152 #5.36/K:152 #5.37/L:152 #5.38/M:152 #5.39/N:152 #5.40/O:152
+> #5.41/P:152 #5.42/Q:152 #5.43/R:152 #5.44/S:152 #5.45/T:152 #5.46/U:152
+> #5.47/V:152 #5.48/W:152 #5.49/X:152 #5.50/Y:152 #5.51/Z:152 #5.52/a:152
+> #5.53/b:152 #5.54/c:152 #5.55/d:152 #5.56/e:152 #5.57/f:152 #5.58/g:152
+> #5.59/h:152 #5.60/i:152 #5.61/j:152 #5.62/k:152 #5.63/l:152 #5.64/m:152
+> #5.65/n:152 #5.66/o:152 #5.67/p:152 #5.68/q:152 #5.69/r:152 #5.70/s:152
+> #5.71/t:152 #5.72/u:152 #5.73/v:152 #5.74/w:152 #5.75/x:152 #5.76/y:152
+> #5.77/z:152
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [152] RMSD: 170.337
+> color #19 #58ac5aff models
+> select #5.1/0:137 #5.2/1:137 #5.3/2:137 #5.4/3:137 #5.5/4:137 #5.6/5:137
+> #5.7/6:137 #5.8/7:137 #5.9/8:137 #5.10/9:137 #5.11/AA:137 #5.12/AB:137
+> #5.13/AC:137 #5.14/AD:137 #5.15/AE:137 #5.16/AF:137 #5.17/AG:137
+> #5.18/AH:137 #5.19/AI:137 #5.20/AJ:137 #5.21/AK:137 #5.22/AL:137
+> #5.23/AM:137 #5.24/AN:137 #5.25/AO:137 #5.26/AP:137 #5.27/B:137 #5.28/C:137
+> #5.29/D:137 #5.30/E:137 #5.31/F:137 #5.32/G:137 #5.33/H:137 #5.34/I:137
+> #5.35/J:137 #5.36/K:137 #5.37/L:137 #5.38/M:137 #5.39/N:137 #5.40/O:137
+> #5.41/P:137 #5.42/Q:137 #5.43/R:137 #5.44/S:137 #5.45/T:137 #5.46/U:137
+> #5.47/V:137 #5.48/W:137 #5.49/X:137 #5.50/Y:137 #5.51/Z:137 #5.52/a:137
+> #5.53/b:137 #5.54/c:137 #5.55/d:137 #5.56/e:137 #5.57/f:137 #5.58/g:137
+> #5.59/h:137 #5.60/i:137 #5.61/j:137 #5.62/k:137 #5.63/l:137 #5.64/m:137
+> #5.65/n:137 #5.66/o:137 #5.67/p:137 #5.68/q:137 #5.69/r:137 #5.70/s:137
+> #5.71/t:137 #5.72/u:137 #5.73/v:137 #5.74/w:137 #5.75/x:137 #5.76/y:137
+> #5.77/z:137
+atoms, 462 bonds, 77 residues, 77 models selected
+> select #5.1/0:137 #5.2/1:137 #5.3/2:137 #5.4/3:137 #5.5/4:137 #5.6/5:137
+> #5.7/6:137 #5.8/7:137 #5.9/8:137 #5.10/9:137 #5.11/AA:137 #5.12/AB:137
+> #5.13/AC:137 #5.14/AD:137 #5.15/AE:137 #5.16/AF:137 #5.17/AG:137
+> #5.18/AH:137 #5.19/AI:137 #5.20/AJ:137 #5.21/AK:137 #5.22/AL:137
+> #5.23/AM:137 #5.24/AN:137 #5.25/AO:137 #5.26/AP:137 #5.27/B:137 #5.28/C:137
+> #5.29/D:137 #5.30/E:137 #5.31/F:137 #5.32/G:137 #5.33/H:137 #5.34/I:137
+> #5.35/J:137 #5.36/K:137 #5.37/L:137 #5.38/M:137 #5.39/N:137 #5.40/O:137
+> #5.41/P:137 #5.42/Q:137 #5.43/R:137 #5.44/S:137 #5.45/T:137 #5.46/U:137
+> #5.47/V:137 #5.48/W:137 #5.49/X:137 #5.50/Y:137 #5.51/Z:137 #5.52/a:137
+> #5.53/b:137 #5.54/c:137 #5.55/d:137 #5.56/e:137 #5.57/f:137 #5.58/g:137
+> #5.59/h:137 #5.60/i:137 #5.61/j:137 #5.62/k:137 #5.63/l:137 #5.64/m:137
+> #5.65/n:137 #5.66/o:137 #5.67/p:137 #5.68/q:137 #5.69/r:137 #5.70/s:137
+> #5.71/t:137 #5.72/u:137 #5.73/v:137 #5.74/w:137 #5.75/x:137 #5.76/y:137
+> #5.77/z:137
+atoms, 462 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [137] RMSD: 169.412
+> color #18 #9bccffff models
+> color #18 #41feffff models
+> select #5.1/0:126 #5.2/1:126 #5.3/2:126 #5.4/3:126 #5.5/4:126 #5.6/5:126
+> #5.7/6:126 #5.8/7:126 #5.9/8:126 #5.10/9:126 #5.11/AA:126 #5.12/AB:126
+> #5.13/AC:126 #5.14/AD:126 #5.15/AE:126 #5.16/AF:126 #5.17/AG:126
+> #5.18/AH:126 #5.19/AI:126 #5.20/AJ:126 #5.21/AK:126 #5.22/AL:126
+> #5.23/AM:126 #5.24/AN:126 #5.25/AO:126 #5.26/AP:126 #5.27/B:126 #5.28/C:126
+> #5.29/D:126 #5.30/E:126 #5.31/F:126 #5.32/G:126 #5.33/H:126 #5.34/I:126
+> #5.35/J:126 #5.36/K:126 #5.37/L:126 #5.38/M:126 #5.39/N:126 #5.40/O:126
+> #5.41/P:126 #5.42/Q:126 #5.43/R:126 #5.44/S:126 #5.45/T:126 #5.46/U:126
+> #5.47/V:126 #5.48/W:126 #5.49/X:126 #5.50/Y:126 #5.51/Z:126 #5.52/a:126
+> #5.53/b:126 #5.54/c:126 #5.55/d:126 #5.56/e:126 #5.57/f:126 #5.58/g:126
+> #5.59/h:126 #5.60/i:126 #5.61/j:126 #5.62/k:126 #5.63/l:126 #5.64/m:126
+> #5.65/n:126 #5.66/o:126 #5.67/p:126 #5.68/q:126 #5.69/r:126 #5.70/s:126
+> #5.71/t:126 #5.72/u:126 #5.73/v:126 #5.74/w:126 #5.75/x:126 #5.76/y:126
+> #5.77/z:126
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:126 #5.2/1:126 #5.3/2:126 #5.4/3:126 #5.5/4:126 #5.6/5:126
+> #5.7/6:126 #5.8/7:126 #5.9/8:126 #5.10/9:126 #5.11/AA:126 #5.12/AB:126
+> #5.13/AC:126 #5.14/AD:126 #5.15/AE:126 #5.16/AF:126 #5.17/AG:126
+> #5.18/AH:126 #5.19/AI:126 #5.20/AJ:126 #5.21/AK:126 #5.22/AL:126
+> #5.23/AM:126 #5.24/AN:126 #5.25/AO:126 #5.26/AP:126 #5.27/B:126 #5.28/C:126
+> #5.29/D:126 #5.30/E:126 #5.31/F:126 #5.32/G:126 #5.33/H:126 #5.34/I:126
+> #5.35/J:126 #5.36/K:126 #5.37/L:126 #5.38/M:126 #5.39/N:126 #5.40/O:126
+> #5.41/P:126 #5.42/Q:126 #5.43/R:126 #5.44/S:126 #5.45/T:126 #5.46/U:126
+> #5.47/V:126 #5.48/W:126 #5.49/X:126 #5.50/Y:126 #5.51/Z:126 #5.52/a:126
+> #5.53/b:126 #5.54/c:126 #5.55/d:126 #5.56/e:126 #5.57/f:126 #5.58/g:126
+> #5.59/h:126 #5.60/i:126 #5.61/j:126 #5.62/k:126 #5.63/l:126 #5.64/m:126
+> #5.65/n:126 #5.66/o:126 #5.67/p:126 #5.68/q:126 #5.69/r:126 #5.70/s:126
+> #5.71/t:126 #5.72/u:126 #5.73/v:126 #5.74/w:126 #5.75/x:126 #5.76/y:126
+> #5.77/z:126
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [126] RMSD: 167.782
+> color #17 #fc5fffff models
+> color #17 #ff4bf9ff models
+> select clear
+> select add #16
+models selected
+> select #5.1/0:98 #5.2/1:98 #5.3/2:98 #5.4/3:98 #5.5/4:98 #5.6/5:98 #5.7/6:98
+> #5.8/7:98 #5.9/8:98 #5.10/9:98 #5.11/AA:98 #5.12/AB:98 #5.13/AC:98
+> #5.14/AD:98 #5.15/AE:98 #5.16/AF:98 #5.17/AG:98 #5.18/AH:98 #5.19/AI:98
+> #5.20/AJ:98 #5.21/AK:98 #5.22/AL:98 #5.23/AM:98 #5.24/AN:98 #5.25/AO:98
+> #5.26/AP:98 #5.27/B:98 #5.28/C:98 #5.29/D:98 #5.30/E:98 #5.31/F:98
+> #5.32/G:98 #5.33/H:98 #5.34/I:98 #5.35/J:98 #5.36/K:98 #5.37/L:98 #5.38/M:98
+> #5.39/N:98 #5.40/O:98 #5.41/P:98 #5.42/Q:98 #5.43/R:98 #5.44/S:98 #5.45/T:98
+> #5.46/U:98 #5.47/V:98 #5.48/W:98 #5.49/X:98 #5.50/Y:98 #5.51/Z:98 #5.52/a:98
+> #5.53/b:98 #5.54/c:98 #5.55/d:98 #5.56/e:98 #5.57/f:98 #5.58/g:98 #5.59/h:98
+> #5.60/i:98 #5.61/j:98 #5.62/k:98 #5.63/l:98 #5.64/m:98 #5.65/n:98 #5.66/o:98
+> #5.67/p:98 #5.68/q:98 #5.69/r:98 #5.70/s:98 #5.71/t:98 #5.72/u:98 #5.73/v:98
+> #5.74/w:98 #5.75/x:98 #5.76/y:98 #5.77/z:98
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:98 #5.2/1:98 #5.3/2:98 #5.4/3:98 #5.5/4:98 #5.6/5:98 #5.7/6:98
+> #5.8/7:98 #5.9/8:98 #5.10/9:98 #5.11/AA:98 #5.12/AB:98 #5.13/AC:98
+> #5.14/AD:98 #5.15/AE:98 #5.16/AF:98 #5.17/AG:98 #5.18/AH:98 #5.19/AI:98
+> #5.20/AJ:98 #5.21/AK:98 #5.22/AL:98 #5.23/AM:98 #5.24/AN:98 #5.25/AO:98
+> #5.26/AP:98 #5.27/B:98 #5.28/C:98 #5.29/D:98 #5.30/E:98 #5.31/F:98
+> #5.32/G:98 #5.33/H:98 #5.34/I:98 #5.35/J:98 #5.36/K:98 #5.37/L:98 #5.38/M:98
+> #5.39/N:98 #5.40/O:98 #5.41/P:98 #5.42/Q:98 #5.43/R:98 #5.44/S:98 #5.45/T:98
+> #5.46/U:98 #5.47/V:98 #5.48/W:98 #5.49/X:98 #5.50/Y:98 #5.51/Z:98 #5.52/a:98
+> #5.53/b:98 #5.54/c:98 #5.55/d:98 #5.56/e:98 #5.57/f:98 #5.58/g:98 #5.59/h:98
+> #5.60/i:98 #5.61/j:98 #5.62/k:98 #5.63/l:98 #5.64/m:98 #5.65/n:98 #5.66/o:98
+> #5.67/p:98 #5.68/q:98 #5.69/r:98 #5.70/s:98 #5.71/t:98 #5.72/u:98 #5.73/v:98
+> #5.74/w:98 #5.75/x:98 #5.76/y:98 #5.77/z:98
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [98] RMSD: 166.557
+> select #5.1/0:115 #5.2/1:115 #5.3/2:115 #5.4/3:115 #5.5/4:115 #5.6/5:115
+> #5.7/6:115 #5.8/7:115 #5.9/8:115 #5.10/9:115 #5.11/AA:115 #5.12/AB:115
+> #5.13/AC:115 #5.14/AD:115 #5.15/AE:115 #5.16/AF:115 #5.17/AG:115
+> #5.18/AH:115 #5.19/AI:115 #5.20/AJ:115 #5.21/AK:115 #5.22/AL:115
+> #5.23/AM:115 #5.24/AN:115 #5.25/AO:115 #5.26/AP:115 #5.27/B:115 #5.28/C:115
+> #5.29/D:115 #5.30/E:115 #5.31/F:115 #5.32/G:115 #5.33/H:115 #5.34/I:115
+> #5.35/J:115 #5.36/K:115 #5.37/L:115 #5.38/M:115 #5.39/N:115 #5.40/O:115
+> #5.41/P:115 #5.42/Q:115 #5.43/R:115 #5.44/S:115 #5.45/T:115 #5.46/U:115
+> #5.47/V:115 #5.48/W:115 #5.49/X:115 #5.50/Y:115 #5.51/Z:115 #5.52/a:115
+> #5.53/b:115 #5.54/c:115 #5.55/d:115 #5.56/e:115 #5.57/f:115 #5.58/g:115
+> #5.59/h:115 #5.60/i:115 #5.61/j:115 #5.62/k:115 #5.63/l:115 #5.64/m:115
+> #5.65/n:115 #5.66/o:115 #5.67/p:115 #5.68/q:115 #5.69/r:115 #5.70/s:115
+> #5.71/t:115 #5.72/u:115 #5.73/v:115 #5.74/w:115 #5.75/x:115 #5.76/y:115
+> #5.77/z:115
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:115 #5.2/1:115 #5.3/2:115 #5.4/3:115 #5.5/4:115 #5.6/5:115
+> #5.7/6:115 #5.8/7:115 #5.9/8:115 #5.10/9:115 #5.11/AA:115 #5.12/AB:115
+> #5.13/AC:115 #5.14/AD:115 #5.15/AE:115 #5.16/AF:115 #5.17/AG:115
+> #5.18/AH:115 #5.19/AI:115 #5.20/AJ:115 #5.21/AK:115 #5.22/AL:115
+> #5.23/AM:115 #5.24/AN:115 #5.25/AO:115 #5.26/AP:115 #5.27/B:115 #5.28/C:115
+> #5.29/D:115 #5.30/E:115 #5.31/F:115 #5.32/G:115 #5.33/H:115 #5.34/I:115
+> #5.35/J:115 #5.36/K:115 #5.37/L:115 #5.38/M:115 #5.39/N:115 #5.40/O:115
+> #5.41/P:115 #5.42/Q:115 #5.43/R:115 #5.44/S:115 #5.45/T:115 #5.46/U:115
+> #5.47/V:115 #5.48/W:115 #5.49/X:115 #5.50/Y:115 #5.51/Z:115 #5.52/a:115
+> #5.53/b:115 #5.54/c:115 #5.55/d:115 #5.56/e:115 #5.57/f:115 #5.58/g:115
+> #5.59/h:115 #5.60/i:115 #5.61/j:115 #5.62/k:115 #5.63/l:115 #5.64/m:115
+> #5.65/n:115 #5.66/o:115 #5.67/p:115 #5.68/q:115 #5.69/r:115 #5.70/s:115
+> #5.71/t:115 #5.72/u:115 #5.73/v:115 #5.74/w:115 #5.75/x:115 #5.76/y:115
+> #5.77/z:115
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [115] RMSD: 167.880
+> hide #!17 models
+> hide #!18 models
+> hide #!19 models
+> hide #!20 models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #14, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #15, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #21, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> rename #14 id #200
+> rename #15 id #200
+> rename #200.1 id #200.1.1
+> hide #!200 models
+> show #!200 models
+> hide #!200 models
+> show #!200 models
+> hide #!200.1 models
+> hide #200.1.1 models
+> show #200.1.1 models
+> rename #200 id #200.
+Invalid "id" argument: Expected an integer
+> rename #200 id #200.1
+> close #200.1.1.1#200#200.1#200.1.1#200.1.1.2
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #14, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #15, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> combine #14-16
+No structures specified
+> rename #14-16 id #200
+> hide #!200.2 models
+> hide #!200.1 models
+> hide #!200.3 models
+> show #!200.2 models
+> show #!200.1 models
+> rename #21 id #200
+> show #!200.3 models
+> volume #200.4 level 0.055
+> volume #200.1 level 0.055
+> volume #200.2 level 0.055
+> select add #200.1
+atoms, 385 bonds, 77 residues, 79 models selected
+> select subtract #200.1
+atoms, 385 bonds, 77 residues, 77 models selected
+> select add #200.1
+atoms, 385 bonds, 77 residues, 79 models selected
+> ui mousemode right "translate selected models"
+> view matrix models
+> #5.1,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.2,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.3,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.4,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.5,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.6,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.7,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.8,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.9,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.10,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.11,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.12,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.13,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.14,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.15,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.16,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.17,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.18,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.19,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.20,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.21,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.22,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.23,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.24,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.25,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.26,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.27,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.28,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.29,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.30,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.31,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.32,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.33,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.34,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.35,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.36,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.37,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.38,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.39,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.40,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.41,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.42,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.43,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.44,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.45,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.46,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.47,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.48,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.49,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.50,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.51,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.52,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.53,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.54,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.55,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.56,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.57,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.58,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.59,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.60,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.61,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.62,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.63,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.64,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.65,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.66,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.67,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.68,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.69,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.70,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.71,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.72,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.73,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.74,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.75,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.76,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#5.77,0.99885,0.04779,0.0023879,-4.0493,-0.047798,0.99885,0.0035481,-42.02,-0.0022156,-0.0036582,0.99999,138.92,#200.1,1,0,0,5.5318,0,1,0,-51.95,0,0,1,33.358
+> view matrix models
+> #5.1,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.2,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.3,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.4,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.5,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.6,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.7,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.8,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.9,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.10,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.11,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.12,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.13,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.14,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.15,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.16,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.17,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.18,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.19,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.20,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.21,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.22,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.23,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.24,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.25,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.26,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.27,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.28,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.29,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.30,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.31,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.32,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.33,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.34,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.35,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.36,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.37,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.38,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.39,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.40,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.41,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.42,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.43,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.44,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.45,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.46,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.47,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.48,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.49,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.50,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.51,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.52,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.53,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.54,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.55,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.56,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.57,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.58,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.59,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.60,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.61,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.62,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.63,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.64,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.65,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.66,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.67,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.68,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.69,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.70,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.71,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.72,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.73,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.74,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.75,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.76,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#5.77,0.99885,0.04779,0.0023879,-9.5768,-0.047798,0.99885,0.0035481,10.124,-0.0022156,-0.0036582,0.99999,105.59,#200.1,1,0,0,0.0042405,0,1,0,0.19501,0,0,1,0.034986
+> undo
+> select add #200
+atoms, 385 bonds, 77 residues, 86 models selected
+> select subtract #200
+atoms, 385 bonds, 77 residues, 77 models selected
+> select add #5
+atoms, 169015 bonds, 22022 residues, 78 models selected
+> select subtract #5
+Nothing selected
+> select add #200.1
+models selected
+> view matrix models #200.1,1,0,0,0.077297,0,1,0,0.52449,0,0,1,0.51625
+> view matrix models #200.1,1,0,0,0.67563,0,1,0,1.324,0,0,1,52.122
+> select subtract #200.1
+Nothing selected
+> select add #200.1
+models selected
+> select add #200.2
+models selected
+> view matrix models
+> #200.1,1,0,0,0.6735,0,1,0,2.3498,0,0,1,51.928,#200.2,1,0,0,-0.0021254,0,1,0,1.0259,0,0,1,-0.19425
+> undo
+> select add #200.2
+models selected
+> view matrix models #200.2,1,0,0,-0.60567,0,1,0,-1.166,0,0,1,-52.235
+> ui tool show "Fit in Map"
+> fitmap #200.2 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.9777, correlation about mean = 0.8022, overlap = 32.78
+steps = 44, shift = 0.691, angle = 9.14 degrees
+Position of S115_glycan.mrc (#200.2) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99622820 -0.06463475 0.05789405 -0.33489106
+.05849538 0.99305283 0.10209985 -32.20364199
+-0.06409105 -0.09832821 0.99308806 -23.24551111
+Axis -0.75639798 0.46036113 0.46468239
+Axis point 0.00000000 -130.00292727 192.15885784
+Rotation angle (degrees) 7.61341651
+Shift along axis -25.37377382
+> select subtract #200.2
+Nothing selected
+> select add #200.4
+models selected
+> view matrix models #200.4,1,0,0,-0.61367,0,1,0,-1.1121,0,0,1,-52.926
+> view matrix models #200.4,1,0,0,-1.2077,0,1,0,-4.0453,0,0,1,-104.14
+> select subtract #200.4
+Nothing selected
+> select add #200.1
+models selected
+> view matrix models #200.1,1,0,0,0.67313,0,1,0,2.1033,0,0,1,51.898
+> select subtract #200.1
+Nothing selected
+> hide #!6 models
+> select add #200.1
+models selected
+> view matrix models #200.1,1,0,0,0.88867,0,1,0,2.4125,0,0,1,52.634
+> select subtract #200.1
+Nothing selected
+> select add #200.4
+models selected
+> view matrix models #200.4,1,0,0,-0.55118,0,1,0,-4.2958,0,0,1,-103.35
+> select add #200.3
+models selected
+> select subtract #200.4
+models selected
+> select add #200.2
+models selected
+> select subtract #200.3
+models selected
+> select subtract #200.2
+Nothing selected
+> select add #200.4
+models selected
+> view matrix models #200.4,1,0,0,-0.73365,0,1,0,-4.3614,0,0,1,-103.79
+> select subtract #200.4
+Nothing selected
+> select add #200.1
+models selected
+> view matrix models #200.1,1,0,0,0.52249,0,1,0,2.5066,0,0,1,51.909
+> select subtract #200.1
+Nothing selected
+> show #!6 models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #14, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #15, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #16, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #21, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> rename #14-16 id #200
+> rename #21 id #200
+> select add #200.5
+models selected
+> volume #200.8 level 0.055
+> volume #200.7 level 0.055
+> volume #200.6 level 0.055
+> volume #200.5 level 0.055
+> select subtract #200.5
+Nothing selected
+> select add #200.5
+models selected
+> view matrix models #200.5,1,0,0,2.8881,0,1,0,-28.411,0,0,1,81.385
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #200.5,0.989,-0.026466,0.14555,-25.866,0.011975,0.99496,0.099543,-53.232,-0.14746,-0.096704,0.98433,123.78
+> view matrix models
+> #200.5,0.90768,-0.41607,0.054779,82.658,0.40812,0.90557,0.11566,-93.139,-0.09773,-0.082628,0.99178,112.55
+> view matrix models
+> #200.5,0.85277,-0.51512,0.086281,101.6,0.49536,0.85004,0.17902,-109.51,-0.16556,-0.10992,0.98005,129.82
+> ui mousemode right "translate selected models"
+> view matrix models
+> #200.5,0.85277,-0.51512,0.086281,108.56,0.49536,0.85004,0.17902,-112.54,-0.16556,-0.10992,0.98005,130.87
+> view matrix models
+> #200.5,0.85277,-0.51512,0.086281,107.54,0.49536,0.85004,0.17902,-109.46,-0.16556,-0.10992,0.98005,131.54
+> view matrix models
+> #200.5,0.85277,-0.51512,0.086281,107.27,0.49536,0.85004,0.17902,-109.48,-0.16556,-0.10992,0.98005,130.77
+> view matrix models
+> #200.5,0.85277,-0.51512,0.086281,106.7,0.49536,0.85004,0.17902,-109.01,-0.16556,-0.10992,0.98005,130.54
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #200.5,0.85349,-0.52058,0.023389,122.94,0.51552,0.85005,0.10801,-94.472,-0.076108,-0.080125,0.99388,109.36
+> view matrix models
+> #200.5,0.83298,-0.55257,0.028536,130.65,0.54643,0.82964,0.11446,-96.246,-0.086921,-0.079748,0.99302,110.95
+> ui mousemode right "translate selected models"
+> view matrix models
+> #200.5,0.83298,-0.55257,0.028536,130.87,0.54643,0.82964,0.11446,-96.398,-0.086921,-0.079748,0.99302,111.33
+> select subtract #200.5
+Nothing selected
+> select add #200.6
+models selected
+> view matrix models #200.6,1,0,0,-15.435,0,1,0,18.728,0,0,1,22.652
+> view matrix models #200.6,1,0,0,-31.215,0,1,0,-31.051,0,0,1,34.225
+> view matrix models #200.6,1,0,0,-27.998,0,1,0,-40.87,0,0,1,27.913
+> select add #200.7
+models selected
+> select add #200.8
+models selected
+> select subtract #200.6
+models selected
+> view matrix models
+> #200.7,1,0,0,9.9284,0,1,0,-28.79,0,0,1,30.198,#200.8,1,0,0,9.9284,0,1,0,-28.79,0,0,1,30.198
+> view matrix models
+> #200.7,1,0,0,2.3965,0,1,0,-53.204,0,0,1,29.295,#200.8,1,0,0,2.3965,0,1,0,-53.204,0,0,1,29.295
+> view matrix models
+> #200.7,1,0,0,-11.783,0,1,0,-31.513,0,0,1,27.739,#200.8,1,0,0,-11.783,0,1,0,-31.513,0,0,1,27.739
+> select add #200.6
+models selected
+> view matrix models
+> #200.6,1,0,0,-22.148,0,1,0,-48.632,0,0,1,50.363,#200.7,1,0,0,-5.9326,0,1,0,-39.275,0,0,1,50.188,#200.8,1,0,0,-5.9326,0,1,0,-39.275,0,0,1,50.188
+> view matrix models
+> #200.6,1,0,0,-22.608,0,1,0,-46.056,0,0,1,84.714,#200.7,1,0,0,-6.3923,0,1,0,-36.699,0,0,1,84.54,#200.8,1,0,0,-6.3923,0,1,0,-36.699,0,0,1,84.54
+> view matrix models
+> #200.6,1,0,0,-23.532,0,1,0,-38.475,0,0,1,81.134,#200.7,1,0,0,-7.3168,0,1,0,-29.118,0,0,1,80.96,#200.8,1,0,0,-7.3168,0,1,0,-29.118,0,0,1,80.96
+> view matrix models
+> #200.6,1,0,0,-13.492,0,1,0,-41.392,0,0,1,86.056,#200.7,1,0,0,2.7232,0,1,0,-32.035,0,0,1,85.882,#200.8,1,0,0,2.7232,0,1,0,-32.035,0,0,1,85.882
+> view matrix models
+> #200.6,1,0,0,-13.452,0,1,0,-39.078,0,0,1,80.945,#200.7,1,0,0,2.7638,0,1,0,-29.722,0,0,1,80.77,#200.8,1,0,0,2.7638,0,1,0,-29.722,0,0,1,80.77
+> view matrix models
+> #200.6,1,0,0,-8.5676,0,1,0,-38.092,0,0,1,82.005,#200.7,1,0,0,7.648,0,1,0,-28.736,0,0,1,81.83,#200.8,1,0,0,7.648,0,1,0,-28.736,0,0,1,81.83
+> fitmap #200.6 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of S115_glycan.mrc (#200.6) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99960082 0.02496959 -0.01321835 -12.09549229
+-0.02511298 0.99962633 -0.01079557 -32.68162997
+.01294385 0.01112321 0.99985435 77.53435590
+Axis 0.36165679 -0.43167260 -0.82635533
+Axis point -2230.37137526 -338.26700420 0.00000000
+Rotation angle (degrees) 1.73651638
+Shift along axis -54.33758064
+> fitmap #200.6 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of S115_glycan.mrc (#200.6) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99960082 0.02496959 -0.01321835 -12.09549229
+-0.02511298 0.99962633 -0.01079557 -32.68162997
+.01294385 0.01112321 0.99985435 77.53435590
+Axis 0.36165679 -0.43167260 -0.82635533
+Axis point -2230.37137526 -338.26700420 0.00000000
+Rotation angle (degrees) 1.73651638
+Shift along axis -54.33758064
+> fitmap #200.6 inMap #200.5
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of S115_glycan.mrc (#200.6) relative to S115_glycan.mrc (#200.5)
+coordinates:
+Matrix rotation and translation
+.83298001 0.54643308 -0.08692060 -81.74049835
+-0.55256673 0.82964466 -0.07974802 127.76104574
+.02853626 0.11445794 0.99301815 -26.42591364
+Axis 0.17309165 -0.10290425 -0.97951519
+Axis point 169.04144573 200.81056795 0.00000000
+Rotation angle (degrees) 34.12440934
+Shift along axis -1.41116808
+> fitmap #200.6 inMap #200.5
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of S115_glycan.mrc (#200.6) relative to S115_glycan.mrc (#200.5)
+coordinates:
+Matrix rotation and translation
+.83298001 0.54643308 -0.08692060 -81.74049835
+-0.55256673 0.82964466 -0.07974802 127.76104574
+.02853626 0.11445794 0.99301815 -26.42591364
+Axis 0.17309165 -0.10290425 -0.97951519
+Axis point 169.04144573 200.81056795 0.00000000
+Rotation angle (degrees) 34.12440934
+Shift along axis -1.41116808
+> view matrix models
+> #200.6,1,0,0,-9.2101,0,1,0,-37.733,0,0,1,83.182,#200.7,1,0,0,7.0055,0,1,0,-28.377,0,0,1,83.007,#200.8,1,0,0,7.0055,0,1,0,-28.377,0,0,1,83.007
+> fitmap #200.6 inMap #200.5
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of S115_glycan.mrc (#200.6) relative to S115_glycan.mrc (#200.5)
+coordinates:
+Matrix rotation and translation
+.83298001 0.54643308 -0.08692060 -82.18183773
+-0.55256673 0.82964466 -0.07974802 128.32003544
+.02853626 0.11445794 0.99301815 -25.23419128
+Axis 0.17309165 -0.10290425 -0.97951519
+Axis point 169.63306464 201.38688817 0.00000000
+Rotation angle (degrees) 34.12440934
+Shift along axis -2.71239280
+> select add #200.5
+models selected
+> select subtract #200.5
+models selected
+> view matrix models
+> #200.6,1,0,0,-9.4824,0,1,0,-36.895,0,0,1,81.435,#200.7,1,0,0,6.7331,0,1,0,-27.539,0,0,1,81.261,#200.8,1,0,0,6.7331,0,1,0,-27.539,0,0,1,81.261
+> fitmap #200.6 inMap #200.5
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of S115_glycan.mrc (#200.6) relative to S115_glycan.mrc (#200.5)
+coordinates:
+Matrix rotation and translation
+.83298001 0.54643308 -0.08692060 -81.79897487
+-0.55256673 0.82964466 -0.07974802 129.30500805
+.02853626 0.11445794 0.99301815 -26.88043291
+Axis 0.17309165 -0.10290425 -0.97951519
+Axis point 171.58718882 201.78319490 0.00000000
+Rotation angle (degrees) 34.12440934
+Shift along axis -1.13496163
+> view matrix models
+> #200.6,1,0,0,-8.0808,0,1,0,-36.919,0,0,1,82.781,#200.7,1,0,0,8.1348,0,1,0,-27.562,0,0,1,82.606,#200.8,1,0,0,8.1348,0,1,0,-27.562,0,0,1,82.606
+> fitmap #200.6 inMap #200.5
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of S115_glycan.mrc (#200.6) relative to S115_glycan.mrc (#200.5)
+coordinates:
+Matrix rotation and translation
+.83298001 0.54643308 -0.08692060 -80.76122520
+-0.55256673 0.82964466 -0.07974802 128.40367976
+.02853626 0.11445794 0.99301815 -25.50704917
+Axis 0.17309165 -0.10290425 -0.97951519
+Axis point 170.54473039 199.22557782 0.00000000
+Rotation angle (degrees) 34.12440934
+Shift along axis -2.20783554
+> fitmap #200.6 inMap #200.5
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of S115_glycan.mrc (#200.6) relative to S115_glycan.mrc (#200.5)
+coordinates:
+Matrix rotation and translation
+.83298001 0.54643308 -0.08692060 -80.76122520
+-0.55256673 0.82964466 -0.07974802 128.40367976
+.02853626 0.11445794 0.99301815 -25.50704917
+Axis 0.17309165 -0.10290425 -0.97951519
+Axis point 170.54473039 199.22557782 0.00000000
+Rotation angle (degrees) 34.12440934
+Shift along axis -2.20783554
+> fitmap #200.6 inMap #200.5
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of S115_glycan.mrc (#200.6) relative to S115_glycan.mrc (#200.5)
+coordinates:
+Matrix rotation and translation
+.83298001 0.54643308 -0.08692060 -80.76122520
+-0.55256673 0.82964466 -0.07974802 128.40367976
+.02853626 0.11445794 0.99301815 -25.50704917
+Axis 0.17309165 -0.10290425 -0.97951519
+Axis point 170.54473039 199.22557782 0.00000000
+Rotation angle (degrees) 34.12440934
+Shift along axis -2.20783554
+> fitmap #200.6 inMap #200.5
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of S115_glycan.mrc (#200.6) relative to S115_glycan.mrc (#200.5)
+coordinates:
+Matrix rotation and translation
+.83298001 0.54643308 -0.08692060 -80.76122520
+-0.55256673 0.82964466 -0.07974802 128.40367976
+.02853626 0.11445794 0.99301815 -25.50704917
+Axis 0.17309165 -0.10290425 -0.97951519
+Axis point 170.54473039 199.22557782 0.00000000
+Rotation angle (degrees) 34.12440934
+Shift along axis -2.20783554
+> fitmap #200.6 inMap #200.5
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of S115_glycan.mrc (#200.6) relative to S115_glycan.mrc (#200.5)
+coordinates:
+Matrix rotation and translation
+.83298001 0.54643308 -0.08692060 -80.76122520
+-0.55256673 0.82964466 -0.07974802 128.40367976
+.02853626 0.11445794 0.99301815 -25.50704917
+Axis 0.17309165 -0.10290425 -0.97951519
+Axis point 170.54473039 199.22557782 0.00000000
+Rotation angle (degrees) 34.12440934
+Shift along axis -2.20783554
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #200.6,0.99991,-0.0086416,0.010569,-8.919,0.0085221,0.9999,0.0113,-40.86,-0.010666,-0.011209,0.99988,86.557,#200.7,0.99991,-0.0086416,0.010569,7.2124,0.0085221,0.9999,0.0113,-31.368,-0.010666,-0.011209,0.99988,86.105,#200.8,0.99991,-0.0086416,0.010569,7.2124,0.0085221,0.9999,0.0113,-31.368,-0.010666,-0.011209,0.99988,86.105
+> select subtract #200.7
+models selected
+> select subtract #200.8
+models selected
+> select subtract #200.6
+Nothing selected
+> select add #200.6
+models selected
+> select add #200.8
+models selected
+> fitmap #200.8 inMap #200.5
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0.9999, correlation about mean = 0.9992, overlap = 45.4
+steps = 68, shift = 0.292, angle = 32.2 degrees
+Position of S115_glycan.mrc (#200.8) relative to S115_glycan.mrc (#200.5)
+coordinates:
+Matrix rotation and translation
+.99973175 0.01975357 -0.01209196 -0.85837671
+-0.01989888 0.99972977 -0.01201704 5.65548511
+.01185132 0.01225443 0.99985467 -3.93905890
+Axis 0.46413159 -0.45785567 -0.75825461
+Axis point 283.54644320 47.28152952 0.00000000
+Rotation angle (degrees) 1.49829433
+Shift along axis -0.00098613
+> fitmap #200.7 inMap #200.5
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0.9999, correlation about mean = 0.9992, overlap = 45.4
+steps = 68, shift = 0.292, angle = 32.2 degrees
+Position of S115_glycan.mrc (#200.7) relative to S115_glycan.mrc (#200.5)
+coordinates:
+Matrix rotation and translation
+.99973175 0.01975357 -0.01209196 -0.85837671
+-0.01989888 0.99972977 -0.01201704 5.65548511
+.01185132 0.01225443 0.99985467 -3.93905890
+Axis 0.46413159 -0.45785567 -0.75825461
+Axis point 283.54644320 47.28152952 0.00000000
+Rotation angle (degrees) 1.49829433
+Shift along axis -0.00098613
+> select subtract #200.8
+models selected
+> ui mousemode right "translate selected models"
+> view matrix models
+> #200.6,0.99991,-0.0086416,0.010569,-1.0809,0.0085221,0.9999,0.0113,-39.753,-0.010666,-0.011209,0.99988,95.127
+> view matrix models
+> #200.6,0.99991,-0.0086416,0.010569,5.4473,0.0085221,0.9999,0.0113,-32.254,-0.010666,-0.011209,0.99988,83.253
+> view matrix models
+> #200.6,0.99991,-0.0086416,0.010569,6.8459,0.0085221,0.9999,0.0113,-31.496,-0.010666,-0.011209,0.99988,86.495
+> fitmap #200.6 inMap #200.5
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0.9998, correlation about mean = 0.9987, overlap = 45.22
+steps = 72, shift = 0.512, angle = 32 degrees
+Position of S115_glycan.mrc (#200.6) relative to S115_glycan.mrc (#200.5)
+coordinates:
+Matrix rotation and translation
+.99957615 0.02364852 -0.01697838 -0.41728233
+-0.02382974 0.99966034 -0.01055198 5.86098519
+.01672308 0.01095210 0.99980017 -4.34561576
+Axis 0.34646158 -0.54297904 -0.76494322
+Axis point 245.57470328 22.00533181 -0.00000000
+Rotation angle (degrees) 1.77839412
+Shift along axis -0.00281512
+> select add #200.5
+models selected
+> select subtract #200.6
+models selected
+> select subtract #200.5
+Nothing selected
+> select add #200.6
+models selected
+> view matrix models
+> #200.6,0.84627,-0.53237,0.020219,121.59,0.52835,0.84354,0.096403,-98.474,-0.068377,-0.070901,0.99514,55.907
+> view matrix models
+> #200.6,0.84627,-0.53237,0.020219,125.58,0.52835,0.84354,0.096403,-99.852,-0.068377,-0.070901,0.99514,53.705
+> view matrix models
+> #200.6,0.84627,-0.53237,0.020219,127.13,0.52835,0.84354,0.096403,-93.251,-0.068377,-0.070901,0.99514,54.082
+> view matrix models
+> #200.6,0.84627,-0.53237,0.020219,127.56,0.52835,0.84354,0.096403,-93.312,-0.068377,-0.070901,0.99514,54.328
+> select subtract #200.6
+Nothing selected
+> select add #200.7
+models selected
+> view matrix models
+> #200.7,0.84409,-0.53561,0.0251,129.04,0.53113,0.84162,0.097864,-95.525,-0.073542,-0.069275,0.99488,1.8677
+> select subtract #200.7
+Nothing selected
+> select add #200.6
+models selected
+> view matrix models
+> #200.6,0.84627,-0.53237,0.020219,127.73,0.52835,0.84354,0.096403,-93.5,-0.068377,-0.070901,0.99514,53.369
+> select subtract #200.6
+Nothing selected
+> select add #200.7
+models selected
+> view matrix models
+> #200.7,0.84409,-0.53561,0.0251,129,0.53113,0.84162,0.097864,-95.481,-0.073542,-0.069275,0.99488,1.8694
+> select subtract #200.7
+Nothing selected
+> select add #200.8
+models selected
+> view matrix models
+> #200.8,0.84409,-0.53561,0.0251,131.29,0.53113,0.84162,0.097864,-98.178,-0.073542,-0.069275,0.99488,-41.27
+> view matrix models
+> #200.8,0.84409,-0.53561,0.0251,130.04,0.53113,0.84162,0.097864,-96.905,-0.073542,-0.069275,0.99488,-50.347
+> select subtract #200.8
+Nothing selected
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #14, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> rename #14 id #200
+> select add #200.9
+models selected
+> volume #200.9 level 0.055
+> view matrix models #200.9,1,0,0,27.898,0,1,0,-21.796,0,0,1,-74.073
+> view matrix models #200.9,1,0,0,22.745,0,1,0,-37.631,0,0,1,-75.88
+> view matrix models #200.9,1,0,0,16.825,0,1,0,-29.18,0,0,1,-76.266
+> view matrix models #200.9,1,0,0,14.709,0,1,0,-34.075,0,0,1,-76.545
+> view matrix models #200.9,1,0,0,14.442,0,1,0,-32.743,0,0,1,-75.413
+> fitmap #200.9 inMap #200.8
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 1, correlation about mean = 0.9997, overlap = 45.66
+steps = 96, shift = 3.49, angle = 32 degrees
+Position of S115_glycan.mrc (#200.9) relative to S115_glycan.mrc (#200.8)
+coordinates:
+Matrix rotation and translation
+.99988389 0.01272621 -0.00838157 -0.42223381
+-0.01277436 0.99990207 -0.00571614 3.13945827
+.00830800 0.00582254 0.99994854 -2.24368598
+Axis 0.35408013 -0.51214232 -0.78251997
+Axis point 245.42614716 35.37226397 0.00000000
+Rotation angle (degrees) 0.93361185
+Shift along axis -0.00162497
+> view matrix models
+> #200.9,0.85104,-0.52467,0.021086,128.33,0.52113,0.84886,0.088596,-96.392,-0.064383,-0.064411,0.99584,-104.72
+> view matrix models
+> #200.9,0.85104,-0.52467,0.021086,128.36,0.52113,0.84886,0.088596,-96.442,-0.064383,-0.064411,0.99584,-104.92
+> select subtract #200.9
+Nothing selected
+> color #200 #ff1721ff models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #14, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #15, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #16, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> rename #14-16 id #200
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #14, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #15, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #16, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> rename #14-16 id #200
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #14, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #15, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #16, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> rename #14-16 id #200
+> hide #!200.1 models
+> show #!200.1 models
+> hide #!200.1 models
+> hide #!200.2 models
+> hide #!200.3 models
+> show #!200.3 models
+> hide #!200.4 models
+> hide #!200.5 models
+> hide #!200.6 models
+> hide #!200.7 models
+> hide #!200.8 models
+> hide #!200.9 models
+> volume #200.10 level 0.055
+> volume #200.11 level 0.055
+> volume #200.12 level 0.055
+> volume #200.13 level 0.055
+> volume #200.14 level 0.055
+> volume #200.15 level 0.055
+> volume #200.16 level 0.055
+> volume #200.17 level 0.055
+> volume #200.18 level 0.055
+> select add #200.10
+models selected
+> select add #200.11
+models selected
+> select add #200.12
+models selected
+> show #!200.4 models
+> hide #!200.4 models
+> show #!200.5 models
+> hide #!200.5 models
+> show #!200.6 models
+> hide #!200.6 models
+> show #!200.7 models
+> select add #200.13
+models selected
+> view matrix models
+> #200.10,1,0,0,116.23,0,1,0,-57.505,0,0,1,5.572,#200.11,1,0,0,116.23,0,1,0,-57.505,0,0,1,5.572,#200.12,1,0,0,116.23,0,1,0,-57.505,0,0,1,5.572,#200.13,1,0,0,116.23,0,1,0,-57.505,0,0,1,5.572
+> view matrix models
+> #200.10,1,0,0,65.066,0,1,0,-76.696,0,0,1,31.284,#200.11,1,0,0,65.066,0,1,0,-76.696,0,0,1,31.284,#200.12,1,0,0,65.066,0,1,0,-76.696,0,0,1,31.284,#200.13,1,0,0,65.066,0,1,0,-76.696,0,0,1,31.284
+> view matrix models
+> #200.10,1,0,0,60.069,0,1,0,-54.586,0,0,1,32.796,#200.11,1,0,0,60.069,0,1,0,-54.586,0,0,1,32.796,#200.12,1,0,0,60.069,0,1,0,-54.586,0,0,1,32.796,#200.13,1,0,0,60.069,0,1,0,-54.586,0,0,1,32.796
+> view matrix models
+> #200.10,1,0,0,61.339,0,1,0,-52.383,0,0,1,32.884,#200.11,1,0,0,61.339,0,1,0,-52.383,0,0,1,32.884,#200.12,1,0,0,61.339,0,1,0,-52.383,0,0,1,32.884,#200.13,1,0,0,61.339,0,1,0,-52.383,0,0,1,32.884
+> fitmap #200.10 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.8315, correlation about mean = 0.2944, overlap = 29.28
+steps = 76, shift = 2.67, angle = 47.6 degrees
+Position of S115_glycan.mrc (#200.10) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.81502919 0.33458664 0.47305306 -94.03304292
+-0.53593563 0.74562897 0.39599298 -30.88344717
+-0.22022811 -0.57627183 0.78702628 227.05838885
+Axis -0.65793569 0.46914628 -0.58908607
+Axis point 0.00000000 254.33276212 139.02865531
+Rotation angle (degrees) 47.63569357
+Shift along axis -86.37809439
+> view matrix models
+> #200.10,0.82531,0.30827,0.47311,-90.174,-0.51783,0.74729,0.41641,-37.497,-0.22518,-0.58866,0.77638,229.6,#200.11,1,0,0,59.746,0,1,0,-53.202,0,0,1,29.909,#200.12,1,0,0,59.746,0,1,0,-53.202,0,0,1,29.909,#200.13,1,0,0,59.746,0,1,0,-53.202,0,0,1,29.909
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #200.10,0.25995,0.95325,0.15409,-62.496,0.18548,-0.20589,0.96084,-78.067,0.94764,-0.22119,-0.23033,244.8,#200.11,0.58129,0.64191,-0.50004,114.42,0.54418,0.15019,0.82541,-163.66,0.60495,-0.75192,-0.26201,399.63,#200.12,0.58129,0.64191,-0.50004,114.42,0.54418,0.15019,0.82541,-163.66,0.60495,-0.75192,-0.26201,399.63,#200.13,0.58129,0.64191,-0.50004,114.42,0.54418,0.15019,0.82541,-163.66,0.60495,-0.75192,-0.26201,399.63
+> view matrix models
+> #200.10,-0.85522,-0.42779,-0.29255,463.96,-0.14495,0.7394,-0.65748,175.15,0.49758,-0.51988,-0.69436,476.02,#200.11,-0.97611,0.0013565,0.21727,274.21,-0.20275,0.35383,-0.91307,321.52,-0.078116,-0.93531,-0.3451,547.91,#200.12,-0.97611,0.0013565,0.21727,274.21,-0.20275,0.35383,-0.91307,321.52,-0.078116,-0.93531,-0.3451,547.91,#200.13,-0.97611,0.0013565,0.21727,274.21,-0.20275,0.35383,-0.91307,321.52,-0.078116,-0.93531,-0.3451,547.91
+> view matrix models
+> #200.10,-0.60688,-0.67368,0.42171,305.3,-0.65341,0.12084,-0.74729,385.28,0.45248,-0.72907,-0.51353,478.86,#200.11,-0.50903,-0.013571,0.86064,57.341,-0.85557,0.11748,-0.50418,355.84,-0.094266,-0.99298,-0.071412,494.58,#200.12,-0.50903,-0.013571,0.86064,57.341,-0.85557,0.11748,-0.50418,355.84,-0.094266,-0.99298,-0.071412,494.58,#200.13,-0.50903,-0.013571,0.86064,57.341,-0.85557,0.11748,-0.50418,355.84,-0.094266,-0.99298,-0.071412,494.58
+> view matrix models
+> #200.10,-0.70084,-0.13373,0.70067,145.38,-0.66518,0.47726,-0.57425,275.68,-0.25761,-0.86853,-0.42344,579.11,#200.11,-0.28815,0.55475,0.78053,-62.392,-0.67353,0.46198,-0.577,282.67,-0.68068,-0.69197,0.24053,439.9,#200.12,-0.28815,0.55475,0.78053,-62.392,-0.67353,0.46198,-0.577,282.67,-0.68068,-0.69197,0.24053,439.9,#200.13,-0.28815,0.55475,0.78053,-62.392,-0.67353,0.46198,-0.577,282.67,-0.68068,-0.69197,0.24053,439.9
+> view matrix models
+> #200.10,-0.33465,-0.57818,0.74412,172.43,-0.82666,0.5592,0.062725,126.71,-0.45238,-0.59414,-0.66509,610.35,#200.11,-0.10238,0.051083,0.99343,-42.097,-0.48019,0.87208,-0.094329,59.857,-0.87117,-0.4867,-0.064753,500.32,#200.12,-0.10238,0.051083,0.99343,-42.097,-0.48019,0.87208,-0.094329,59.857,-0.87117,-0.4867,-0.064753,500.32,#200.13,-0.10238,0.051083,0.99343,-42.097,-0.48019,0.87208,-0.094329,59.857,-0.87117,-0.4867,-0.064753,500.32
+> view matrix models
+> #200.10,-0.055153,-0.77547,0.62897,201.44,-0.83062,0.38521,0.4021,78.586,-0.5541,-0.50026,-0.66537,605.76,#200.11,0.012995,-0.28904,0.95723,16.78,-0.37654,0.88542,0.27247,-46.18,-0.92631,-0.36398,-0.097328,492.04,#200.12,0.012995,-0.28904,0.95723,16.78,-0.37654,0.88542,0.27247,-46.18,-0.92631,-0.36398,-0.097328,492.04,#200.13,0.012995,-0.28904,0.95723,16.78,-0.37654,0.88542,0.27247,-46.18,-0.92631,-0.36398,-0.097328,492.04
+> view matrix models
+> #200.10,-0.22377,-0.97236,0.066706,398.8,-0.9716,0.22795,0.063501,210.25,-0.076952,-0.050602,-0.99575,534.56,#200.11,-0.45287,-0.58299,0.67457,205.36,-0.70156,0.69992,0.13391,67.338,-0.5502,-0.41261,-0.72597,603.52,#200.12,-0.45287,-0.58299,0.67457,205.36,-0.70156,0.69992,0.13391,67.338,-0.5502,-0.41261,-0.72597,603.52,#200.13,-0.45287,-0.58299,0.67457,205.36,-0.70156,0.69992,0.13391,67.338,-0.5502,-0.41261,-0.72597,603.52
+> ui mousemode right "translate selected models"
+> view matrix models
+> #200.10,-0.22377,-0.97236,0.066706,399.72,-0.9716,0.22795,0.063501,210.64,-0.076952,-0.050602,-0.99575,537.52,#200.11,-0.45287,-0.58299,0.67457,206.28,-0.70156,0.69992,0.13391,67.727,-0.5502,-0.41261,-0.72597,606.48,#200.12,-0.45287,-0.58299,0.67457,206.28,-0.70156,0.69992,0.13391,67.727,-0.5502,-0.41261,-0.72597,606.48,#200.13,-0.45287,-0.58299,0.67457,206.28,-0.70156,0.69992,0.13391,67.727,-0.5502,-0.41261,-0.72597,606.48
+> fitmap #200.10 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.8968, correlation about mean = 0.6136, overlap = 29.48
+steps = 64, shift = 0.576, angle = 23.8 degrees
+Position of S115_glycan.mrc (#200.10) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.29328514 -0.84932770 0.43889209 293.48428907
+-0.95551461 0.27541298 -0.10554385 238.14563812
+-0.03123526 -0.45032225 -0.89231957 583.57162560
+Axis -0.58181227 0.79333815 -0.17919001
+Axis point 288.32795802 0.00000000 295.44950076
+Rotation angle (degrees) 162.76467551
+Shift along axis -86.39294489
+> view matrix models
+> #200.10,-0.26958,-0.86173,0.42982,297.29,-0.96283,0.24909,-0.10447,245.95,-0.017039,-0.442,-0.89685,580.93,#200.11,-0.45287,-0.58299,0.67457,206.94,-0.70156,0.69992,0.13391,67.783,-0.5502,-0.41261,-0.72597,606.4,#200.12,-0.45287,-0.58299,0.67457,206.94,-0.70156,0.69992,0.13391,67.783,-0.5502,-0.41261,-0.72597,606.4,#200.13,-0.45287,-0.58299,0.67457,206.94,-0.70156,0.69992,0.13391,67.783,-0.5502,-0.41261,-0.72597,606.4
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #200.10,-0.25849,-0.73464,0.62728,223.34,-0.96095,0.26196,-0.089185,239.5,-0.098807,-0.62584,-0.77367,597.85,#200.11,-0.31215,-0.4703,0.82546,129.47,-0.68845,0.71072,0.14459,61.327,-0.65467,-0.52315,-0.54563,597.95,#200.12,-0.31215,-0.4703,0.82546,129.47,-0.68845,0.71072,0.14459,61.327,-0.65467,-0.52315,-0.54563,597.95,#200.13,-0.31215,-0.4703,0.82546,129.47,-0.68845,0.71072,0.14459,61.327,-0.65467,-0.52315,-0.54563,597.95
+> view matrix models
+> #200.10,-0.27325,-0.35296,0.89485,86.262,-0.94607,0.26688,-0.18362,259.43,-0.17401,-0.89677,-0.40685,571.75,#200.11,-0.049423,-0.12247,0.99124,-13.535,-0.70933,0.70299,0.051488,88.342,-0.70314,-0.70058,-0.12162,535.33,#200.12,-0.049423,-0.12247,0.99124,-13.535,-0.70933,0.70299,0.051488,88.342,-0.70314,-0.70058,-0.12162,535.33,#200.13,-0.049423,-0.12247,0.99124,-13.535,-0.70933,0.70299,0.051488,88.342,-0.70314,-0.70058,-0.12162,535.33
+> fitmap #200.10 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.8661, correlation about mean = 0.4024, overlap = 33.07
+steps = 268, shift = 1.01, angle = 56.3 degrees
+Position of S115_glycan.mrc (#200.10) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.57751179 0.01521221 0.81624059 -82.74132587
+-0.81403681 0.08646587 0.57434111 91.54103115
+-0.06183996 -0.99613866 0.06231836 461.82425949
+Axis -0.79269798 0.44321022 -0.41856256
+Axis point 0.00000000 256.41524988 181.21814525
+Rotation angle (degrees) 97.86572518
+Shift along axis -87.14154045
+> ui mousemode right "translate selected models"
+> show #!200.9 models
+> hide #!200.7 models
+> show #!200.4 models
+> show #!200.5 models
+> show #!200.6 models
+> show #!200.7 models
+> show #!200.8 models
+> show #!200.1 models
+> show #!200.2 models
+> view matrix models
+> #200.10,0.59692,0.00014085,0.8023,-97.135,-0.8,0.075733,0.5952,99.514,-0.060677,-0.99713,0.04532,437.56,#200.11,-0.049423,-0.12247,0.99124,-33.34,-0.70933,0.70299,0.051488,99.262,-0.70314,-0.70058,-0.12162,507.06,#200.12,-0.049423,-0.12247,0.99124,-33.34,-0.70933,0.70299,0.051488,99.262,-0.70314,-0.70058,-0.12162,507.06,#200.13,-0.049423,-0.12247,0.99124,-33.34,-0.70933,0.70299,0.051488,99.262,-0.70314,-0.70058,-0.12162,507.06
+> view matrix models
+> #200.10,0.59692,0.00014085,0.8023,-80.929,-0.8,0.075733,0.5952,68.745,-0.060677,-0.99713,0.04532,436.68,#200.11,-0.049423,-0.12247,0.99124,-17.133,-0.70933,0.70299,0.051488,68.492,-0.70314,-0.70058,-0.12162,506.18,#200.12,-0.049423,-0.12247,0.99124,-17.133,-0.70933,0.70299,0.051488,68.492,-0.70314,-0.70058,-0.12162,506.18,#200.13,-0.049423,-0.12247,0.99124,-17.133,-0.70933,0.70299,0.051488,68.492,-0.70314,-0.70058,-0.12162,506.18
+> view matrix models
+> #200.10,0.59692,0.00014085,0.8023,-109.42,-0.8,0.075733,0.5952,80.486,-0.060677,-0.99713,0.04532,438.89,#200.11,-0.049423,-0.12247,0.99124,-45.625,-0.70933,0.70299,0.051488,80.234,-0.70314,-0.70058,-0.12162,508.39,#200.12,-0.049423,-0.12247,0.99124,-45.625,-0.70933,0.70299,0.051488,80.234,-0.70314,-0.70058,-0.12162,508.39,#200.13,-0.049423,-0.12247,0.99124,-45.625,-0.70933,0.70299,0.051488,80.234,-0.70314,-0.70058,-0.12162,508.39
+> view matrix models
+> #200.10,0.59692,0.00014085,0.8023,-114.5,-0.8,0.075733,0.5952,81.915,-0.060677,-0.99713,0.04532,440.17,#200.11,-0.049423,-0.12247,0.99124,-50.702,-0.70933,0.70299,0.051488,81.662,-0.70314,-0.70058,-0.12162,509.67,#200.12,-0.049423,-0.12247,0.99124,-50.702,-0.70933,0.70299,0.051488,81.662,-0.70314,-0.70058,-0.12162,509.67,#200.13,-0.049423,-0.12247,0.99124,-50.702,-0.70933,0.70299,0.051488,81.662,-0.70314,-0.70058,-0.12162,509.67
+> select subtract #200.10
+models selected
+> select add #200.10
+models selected
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #200.10,-0.2863,-0.025869,0.95779,-29.294,-0.88651,-0.37209,-0.27504,391.65,0.3635,-0.92784,0.083596,360.94,#200.11,-0.65585,0.42656,0.62282,14.642,-0.61983,0.16663,-0.76684,372.34,-0.43089,-0.88898,0.15511,442.16,#200.12,-0.65585,0.42656,0.62282,14.642,-0.61983,0.16663,-0.76684,372.34,-0.43089,-0.88898,0.15511,442.16,#200.13,-0.65585,0.42656,0.62282,14.642,-0.61983,0.16663,-0.76684,372.34,-0.43089,-0.88898,0.15511,442.16
+> view matrix models
+> #200.10,-0.5087,-0.0058521,0.86092,20.013,-0.84463,-0.19032,-0.50037,405.59,0.16678,-0.9817,0.091874,395.6,#200.11,-0.72421,0.54556,0.42177,49.736,-0.36659,0.21346,-0.90556,362.89,-0.58407,-0.81043,0.045405,474.3,#200.12,-0.72421,0.54556,0.42177,49.736,-0.36659,0.21346,-0.90556,362.89,-0.58407,-0.81043,0.045405,474.3,#200.13,-0.72421,0.54556,0.42177,49.736,-0.36659,0.21346,-0.90556,362.89,-0.58407,-0.81043,0.045405,474.3
+> view matrix models
+> #200.10,-0.51715,-0.089899,0.85116,40.013,-0.81307,-0.25903,-0.52136,419.95,0.26735,-0.96168,0.060862,386.14,#200.11,-0.7787,0.48457,0.39852,74.744,-0.38238,0.13704,-0.91379,381.96,-0.4974,-0.86395,0.078576,465.2,#200.12,-0.7787,0.48457,0.39852,74.744,-0.38238,0.13704,-0.91379,381.96,-0.4974,-0.86395,0.078576,465.2,#200.13,-0.7787,0.48457,0.39852,74.744,-0.38238,0.13704,-0.91379,381.96,-0.4974,-0.86395,0.078576,465.2
+> ui mousemode right "translate selected models"
+> view matrix models
+> #200.10,-0.51715,-0.089899,0.85116,47.619,-0.81307,-0.25903,-0.52136,430.08,0.26735,-0.96168,0.060862,391.3,#200.11,-0.7787,0.48457,0.39852,82.35,-0.38238,0.13704,-0.91379,392.09,-0.4974,-0.86395,0.078576,470.36,#200.12,-0.7787,0.48457,0.39852,82.35,-0.38238,0.13704,-0.91379,392.09,-0.4974,-0.86395,0.078576,470.36,#200.13,-0.7787,0.48457,0.39852,82.35,-0.38238,0.13704,-0.91379,392.09,-0.4974,-0.86395,0.078576,470.36
+> view matrix models
+> #200.10,-0.51715,-0.089899,0.85116,47.259,-0.81307,-0.25903,-0.52136,430.81,0.26735,-0.96168,0.060862,384.15,#200.11,-0.7787,0.48457,0.39852,81.991,-0.38238,0.13704,-0.91379,392.82,-0.4974,-0.86395,0.078576,463.21,#200.12,-0.7787,0.48457,0.39852,81.991,-0.38238,0.13704,-0.91379,392.82,-0.4974,-0.86395,0.078576,463.21,#200.13,-0.7787,0.48457,0.39852,81.991,-0.38238,0.13704,-0.91379,392.82,-0.4974,-0.86395,0.078576,463.21
+> fitmap #200.10 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.9202, correlation about mean = 0.5469, overlap = 35.77
+steps = 60, shift = 2.41, angle = 43.6 degrees
+Position of S115_glycan.mrc (#200.10) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.46269606 -0.08752722 0.88218554 32.44846970
+-0.79714382 0.47650560 -0.37081552 247.99728120
+-0.38790989 -0.87480363 -0.29024905 539.49291136
+Axis -0.32732697 0.82489346 -0.46087725
+Axis point 211.92048946 0.00000000 334.88225663
+Rotation angle (degrees) 129.65919919
+Shift along axis -54.68993226
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #200.10,-0.40934,-0.028071,0.91195,7.7465,-0.767,0.55191,-0.32728,219.64,-0.49413,-0.83343,-0.24745,535.48,#200.11,-0.72788,0.56365,0.39049,61.72,-0.32355,0.21978,-0.92033,370.39,-0.60457,-0.79624,0.022395,478.22,#200.12,-0.72788,0.56365,0.39049,61.72,-0.32355,0.21978,-0.92033,370.39,-0.60457,-0.79624,0.022395,478.22,#200.13,-0.72788,0.56365,0.39049,61.72,-0.32355,0.21978,-0.92033,370.39,-0.60457,-0.79624,0.022395,478.22
+> view matrix models
+> #200.10,-0.68345,0.21035,0.69903,49.821,-0.48225,0.58878,-0.64867,252.12,-0.54802,-0.78044,-0.30097,545.41,#200.11,-0.7901,0.61254,-0.023095,161.65,0.06099,0.041068,-0.99729,371.97,-0.60993,-0.78937,-0.069807,500.15,#200.12,-0.7901,0.61254,-0.023095,161.65,0.06099,0.041068,-0.99729,371.97,-0.60993,-0.78937,-0.069807,500.15,#200.13,-0.7901,0.61254,-0.023095,161.65,0.06099,0.041068,-0.99729,371.97,-0.60993,-0.78937,-0.069807,500.15
+> view matrix models
+> #200.10,-0.8193,-0.059709,0.57025,151.74,-0.37822,0.80377,-0.45924,150.45,-0.43093,-0.59194,-0.68111,585.35,#200.11,-0.94566,0.32333,-0.034537,241.67,0.14586,0.32687,-0.93374,289.4,-0.29062,-0.88804,-0.35627,546.32,#200.12,-0.94566,0.32333,-0.034537,241.67,0.14586,0.32687,-0.93374,289.4,-0.29062,-0.88804,-0.35627,546.32,#200.13,-0.94566,0.32333,-0.034537,241.67,0.14586,0.32687,-0.93374,289.4,-0.29062,-0.88804,-0.35627,546.32
+> view matrix models
+> #200.10,-0.87525,-0.12874,0.46621,197.9,-0.40802,0.71413,-0.5688,198.45,-0.25971,-0.68807,-0.67757,580.18,#200.11,-0.97432,0.20408,-0.09517,283.56,0.13443,0.18808,-0.97291,327.52,-0.18065,-0.96072,-0.21069,510.03,#200.12,-0.97432,0.20408,-0.09517,283.56,0.13443,0.18808,-0.97291,327.52,-0.18065,-0.96072,-0.21069,510.03,#200.13,-0.97432,0.20408,-0.09517,283.56,0.13443,0.18808,-0.97291,327.52,-0.18065,-0.96072,-0.21069,510.03
+> fitmap #200.10 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.9206, correlation about mean = 0.5497, overlap = 35.75
+steps = 68, shift = 0.693, angle = 35.9 degrees
+Position of S115_glycan.mrc (#200.10) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.48084631 -0.09024619 0.87214818 37.85891189
+-0.77979017 0.49880611 -0.37831172 243.12622561
+-0.40089164 -0.86200237 -0.31022217 543.60642992
+Axis -0.31687235 0.83398575 -0.45172967
+Axis point 209.34378917 0.00000000 331.95085763
+Rotation angle (degrees) 130.25054143
+Shift along axis -54.79578628
+> fitmap #200.10 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.9209, correlation about mean = 0.5512, overlap = 35.76
+steps = 44, shift = 0.00627, angle = 0.108 degrees
+Position of S115_glycan.mrc (#200.10) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.48161756 -0.09039851 0.87170674 38.09492448
+-0.78011635 0.49744695 -0.37942722 243.70438045
+-0.39932820 -0.86277149 -0.31010054 543.51816596
+Axis -0.31699905 0.83360225 -0.45234819
+Axis point 209.39663981 0.00000000 332.12656975
+Rotation angle (degrees) 130.32598289
+Shift along axis -54.78299048
+> view matrix models
+> #200.10,-0.80487,-0.22871,0.54761,187.64,-0.5537,0.62143,-0.55429,233.01,-0.21353,-0.74934,-0.62681,573.67,#200.11,-0.87513,-0.078223,-0.47752,417.99,0.44443,0.26033,-0.85715,243.83,0.19136,-0.96234,-0.19306,455.98,#200.12,-0.87513,-0.078223,-0.47752,417.99,0.44443,0.26033,-0.85715,243.83,0.19136,-0.96234,-0.19306,455.98,#200.13,-0.87513,-0.078223,-0.47752,417.99,0.44443,0.26033,-0.85715,243.83,0.19136,-0.96234,-0.19306,455.98
+> fitmap #200.10 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.9196, correlation about mean = 0.5463, overlap = 35.72
+steps = 56, shift = 1.24, angle = 28.3 degrees
+Position of S115_glycan.mrc (#200.10) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.48466829 -0.09151774 0.86989721 39.18228689
+-0.77379929 0.50856194 -0.37762339 240.25189339
+-0.40783737 -0.85614793 -0.31730021 545.12159258
+Axis -0.31368715 0.83759326 -0.44725598
+Axis point 208.52177889 0.00000000 330.63021516
+Rotation angle (degrees) 130.29350174
+Shift along axis -54.86650432
+> ui mousemode right "translate selected models"
+> view matrix models
+> #200.10,-0.47032,-0.11533,0.87493,41.06,-0.79015,0.49656,-0.35929,241.79,-0.39302,-0.8603,-0.32468,546.95,#200.11,-0.87513,-0.078223,-0.47752,417.17,0.44443,0.26033,-0.85715,244.4,0.19136,-0.96234,-0.19306,457.04,#200.12,-0.87513,-0.078223,-0.47752,417.17,0.44443,0.26033,-0.85715,244.4,0.19136,-0.96234,-0.19306,457.04,#200.13,-0.87513,-0.078223,-0.47752,417.17,0.44443,0.26033,-0.85715,244.4,0.19136,-0.96234,-0.19306,457.04
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #200.10,-0.7834,-0.23606,0.57495,179.16,-0.621,0.33537,-0.70844,335.2,-0.025592,-0.91203,-0.40932,528.41,#200.11,-0.59324,-0.30553,-0.7448,488.78,0.76141,0.087458,-0.64235,183.08,0.26139,-0.94816,0.18075,353.66,#200.12,-0.59324,-0.30553,-0.7448,488.78,0.76141,0.087458,-0.64235,183.08,0.26139,-0.94816,0.18075,353.66,#200.13,-0.59324,-0.30553,-0.7448,488.78,0.76141,0.087458,-0.64235,183.08,0.26139,-0.94816,0.18075,353.66
+> fitmap #200.10 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.9204, correlation about mean = 0.5475, overlap = 35.75
+steps = 72, shift = 2.26, angle = 29.8 degrees
+Position of S115_glycan.mrc (#200.10) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.47547683 -0.08938216 0.87517577 36.22758975
+-0.78420908 0.49389320 -0.37561369 244.03703403
+-0.39867019 -0.86491639 -0.30492907 542.59407003
+Axis -0.31953382 0.83187128 -0.45374918
+Axis point 209.97782445 0.00000000 332.60831648
+Rotation angle (degrees) 130.03506794
+Shift along axis -54.77015359
+> view matrix models
+> #200.10,-0.84915,-0.22821,0.4763,211.05,-0.52699,0.30623,-0.79278,348.16,0.035064,-0.9242,-0.3803,514.59,#200.11,-0.093813,-0.57658,-0.81164,491.44,0.9875,0.049826,-0.14954,40.249,0.12666,-0.81552,0.5647,252.17,#200.12,-0.093813,-0.57658,-0.81164,491.44,0.9875,0.049826,-0.14954,40.249,0.12666,-0.81552,0.5647,252.17,#200.13,-0.093813,-0.57658,-0.81164,491.44,0.9875,0.049826,-0.14954,40.249,0.12666,-0.81552,0.5647,252.17
+> view matrix models
+> #200.10,-0.60689,-0.44913,0.65572,177.76,-0.734,0.00026105,-0.67915,407.29,0.30486,-0.89347,-0.32982,460.27,#200.11,-0.40231,-0.67092,-0.62291,504.61,0.91505,-0.31616,-0.25045,145.45,-0.028909,-0.67075,0.74112,201.61,#200.12,-0.40231,-0.67092,-0.62291,504.61,0.91505,-0.31616,-0.25045,145.45,-0.028909,-0.67075,0.74112,201.61,#200.13,-0.40231,-0.67092,-0.62291,504.61,0.91505,-0.31616,-0.25045,145.45,-0.028909,-0.67075,0.74112,201.61
+> view matrix models
+> #200.10,-0.81419,-0.18299,0.55101,179.38,-0.57584,0.37579,-0.72607,324.85,-0.074203,-0.90846,-0.41134,533.57,#200.11,-0.16514,-0.52095,-0.83746,496.28,0.96478,0.090963,-0.24683,58.798,0.20477,-0.84873,0.48758,266.95,#200.12,-0.16514,-0.52095,-0.83746,496.28,0.96478,0.090963,-0.24683,58.798,0.20477,-0.84873,0.48758,266.95,#200.13,-0.16514,-0.52095,-0.83746,496.28,0.96478,0.090963,-0.24683,58.798,0.20477,-0.84873,0.48758,266.95
+> fitmap #200.10 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.9203, correlation about mean = 0.5464, overlap = 35.74
+steps = 72, shift = 0.913, angle = 30.2 degrees
+Position of S115_glycan.mrc (#200.10) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.47648069 -0.08904441 0.87466408 36.42098470
+-0.78237899 0.49677165 -0.37563419 243.23916329
+-0.40106019 -0.86330124 -0.30636858 542.95371628
+Axis -0.31838969 0.83289913 -0.45266660
+Axis point 209.68742932 0.00000000 332.26429856
+Rotation angle (degrees) 130.01879046
+Shift along axis -54.77939239
+> ui mousemode right "translate selected models"
+> view matrix models
+> #200.10,-0.46183,-0.11266,0.87978,37.338,-0.79845,0.48476,-0.35706,244.13,-0.38626,-0.86736,-0.31383,543.45,#200.11,-0.16514,-0.52095,-0.83746,494.6,0.96478,0.090963,-0.24683,58.817,0.20477,-0.84873,0.48758,266.66,#200.12,-0.16514,-0.52095,-0.83746,494.6,0.96478,0.090963,-0.24683,58.817,0.20477,-0.84873,0.48758,266.66,#200.13,-0.16514,-0.52095,-0.83746,494.6,0.96478,0.090963,-0.24683,58.817,0.20477,-0.84873,0.48758,266.66
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #200.10,-0.74435,0.11664,0.65752,84.858,-0.49162,0.57065,-0.65778,259.65,-0.45194,-0.81287,-0.36742,554.74,#200.11,0.24721,-0.41877,-0.8738,428.98,0.92068,0.38263,0.077098,-70.768,0.30206,-0.82354,0.48014,250.71,#200.12,0.24721,-0.41877,-0.8738,428.98,0.92068,0.38263,0.077098,-70.768,0.30206,-0.82354,0.48014,250.71,#200.13,0.24721,-0.41877,-0.8738,428.98,0.92068,0.38263,0.077098,-70.768,0.30206,-0.82354,0.48014,250.71
+> view matrix models
+> #200.10,-0.71601,0.071385,0.69443,80.839,-0.55627,0.54267,-0.62934,266.77,-0.42177,-0.83691,-0.34885,550.85,#200.11,0.19087,-0.45097,-0.87189,442.23,0.94627,0.32072,0.041271,-53.45,0.26103,-0.83293,0.48796,256.07,#200.12,0.19087,-0.45097,-0.87189,442.23,0.94627,0.32072,0.041271,-53.45,0.26103,-0.83293,0.48796,256.07,#200.13,0.19087,-0.45097,-0.87189,442.23,0.94627,0.32072,0.041271,-53.45,0.26103,-0.83293,0.48796,256.07
+> view matrix models
+> #200.10,-0.7001,0.097358,0.70738,70.541,-0.5297,0.59352,-0.60593,247.69,-0.47884,-0.79891,-0.36395,554.8,#200.11,0.17942,-0.42419,-0.88762,442.38,0.92845,0.37131,0.010227,-53.351,0.32524,-0.82595,0.46047,252.89,#200.12,0.17942,-0.42419,-0.88762,442.38,0.92845,0.37131,0.010227,-53.351,0.32524,-0.82595,0.46047,252.89,#200.13,0.17942,-0.42419,-0.88762,442.38,0.92845,0.37131,0.010227,-53.351,0.32524,-0.82595,0.46047,252.89
+> fitmap #200.10 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.9207, correlation about mean = 0.5501, overlap = 35.76
+steps = 84, shift = 1.96, angle = 22 degrees
+Position of S115_glycan.mrc (#200.10) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.47849718 -0.08974106 0.87349127 37.11624681
+-0.78260242 0.49471014 -0.37788270 244.19901811
+-0.39821339 -0.86441219 -0.30694898 542.91915126
+Axis -0.31846279 0.83240712 -0.45351940
+Axis point 209.74439696 0.00000000 332.49667161
+Rotation angle (degrees) 130.19327300
+Shift along axis -54.77151021
+> view matrix models
+> #200.10,-0.83184,-0.023426,0.55452,150.19,-0.51154,0.42,-0.74962,313.55,-0.21534,-0.90722,-0.36136,540.07,#200.11,0.6321,-0.33919,-0.6967,319.43,0.7553,0.47058,0.45616,-157.62,0.17313,-0.81456,0.55364,248.29,#200.12,0.6321,-0.33919,-0.6967,319.43,0.7553,0.47058,0.45616,-157.62,0.17313,-0.81456,0.55364,248.29,#200.13,0.6321,-0.33919,-0.6967,319.43,0.7553,0.47058,0.45616,-157.62,0.17313,-0.81456,0.55364,248.29
+> ui mousemode right "translate selected models"
+> view matrix models
+> #200.10,-0.83184,-0.023426,0.55452,149.05,-0.51154,0.42,-0.74962,313.95,-0.21534,-0.90722,-0.36136,541.51,#200.11,0.6321,-0.33919,-0.6967,318.29,0.7553,0.47058,0.45616,-157.22,0.17313,-0.81456,0.55364,249.73,#200.12,0.6321,-0.33919,-0.6967,318.29,0.7553,0.47058,0.45616,-157.22,0.17313,-0.81456,0.55364,249.73,#200.13,0.6321,-0.33919,-0.6967,318.29,0.7553,0.47058,0.45616,-157.22,0.17313,-0.81456,0.55364,249.73
+> view matrix models
+> #200.10,-0.83184,-0.023426,0.55452,148.96,-0.51154,0.42,-0.74962,314.04,-0.21534,-0.90722,-0.36136,541.23,#200.11,0.6321,-0.33919,-0.6967,318.2,0.7553,0.47058,0.45616,-157.13,0.17313,-0.81456,0.55364,249.44,#200.12,0.6321,-0.33919,-0.6967,318.2,0.7553,0.47058,0.45616,-157.13,0.17313,-0.81456,0.55364,249.44,#200.13,0.6321,-0.33919,-0.6967,318.2,0.7553,0.47058,0.45616,-157.13,0.17313,-0.81456,0.55364,249.44
+> view matrix models
+> #200.10,-0.83184,-0.023426,0.55452,149.51,-0.51154,0.42,-0.74962,313.55,-0.21534,-0.90722,-0.36136,540.64,#200.11,0.6321,-0.33919,-0.6967,318.75,0.7553,0.47058,0.45616,-157.62,0.17313,-0.81456,0.55364,248.85,#200.12,0.6321,-0.33919,-0.6967,318.75,0.7553,0.47058,0.45616,-157.62,0.17313,-0.81456,0.55364,248.85,#200.13,0.6321,-0.33919,-0.6967,318.75,0.7553,0.47058,0.45616,-157.62,0.17313,-0.81456,0.55364,248.85
+> fitmap #200.11 inMap #200.10
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0.9167, correlation about mean = 0.6668, overlap = 32.32
+steps = 76, shift = 4.13, angle = 48.3 degrees
+Position of S115_glycan.mrc (#200.11) relative to S115_glycan.mrc (#200.10)
+coordinates:
+Matrix rotation and translation
+-0.68314031 0.67827326 -0.27067455 162.31714837
+.66426241 0.42311771 -0.61621981 171.12690806
+-0.30343822 -0.60076353 -0.73960019 579.20102662
+Axis 0.39793249 0.84352332 -0.36071893
+Axis point 44.12810327 0.00000000 325.25599129
+Rotation angle (degrees) 178.88720413
+Shift along axis 0.01203065
+> fitmap #200.12 inMap #200.10
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0.9167, correlation about mean = 0.6668, overlap = 32.32
+steps = 76, shift = 4.13, angle = 48.3 degrees
+Position of S115_glycan.mrc (#200.12) relative to S115_glycan.mrc (#200.10)
+coordinates:
+Matrix rotation and translation
+-0.68314031 0.67827326 -0.27067455 162.31714837
+.66426241 0.42311771 -0.61621981 171.12690806
+-0.30343822 -0.60076353 -0.73960019 579.20102662
+Axis 0.39793249 0.84352332 -0.36071893
+Axis point 44.12810327 0.00000000 325.25599129
+Rotation angle (degrees) 178.88720413
+Shift along axis 0.01203065
+> fitmap #200.13 inMap #200.10
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0.9167, correlation about mean = 0.6668, overlap = 32.32
+steps = 76, shift = 4.13, angle = 48.3 degrees
+Position of S115_glycan.mrc (#200.13) relative to S115_glycan.mrc (#200.10)
+coordinates:
+Matrix rotation and translation
+-0.68314031 0.67827326 -0.27067455 162.31714837
+.66426241 0.42311771 -0.61621981 171.12690806
+-0.30343822 -0.60076353 -0.73960019 579.20102662
+Axis 0.39793249 0.84352332 -0.36071893
+Axis point 44.12810327 0.00000000 325.25599129
+Rotation angle (degrees) 178.88720413
+Shift along axis 0.01203065
+> select subtract #200.11
+models selected
+> select subtract #200.12
+models selected
+> select subtract #200.13
+models selected
+> select subtract #200.10
+Nothing selected
+> select add #200.11
+models selected
+> select add #200.12
+models selected
+> select add #200.13
+models selected
+> view matrix models
+> #200.11,0.38444,-0.90726,-0.17053,335.93,0.85591,0.28109,0.43406,-120.67,-0.34587,-0.31283,0.8846,192.02,#200.12,0.38444,-0.90726,-0.17053,335.93,0.85591,0.28109,0.43406,-120.67,-0.34587,-0.31283,0.8846,192.02,#200.13,0.38444,-0.90726,-0.17053,335.93,0.85591,0.28109,0.43406,-120.67,-0.34587,-0.31283,0.8846,192.02
+> view matrix models
+> #200.11,0.38444,-0.90726,-0.17053,334.57,0.85591,0.28109,0.43406,-142.41,-0.34587,-0.31283,0.8846,194.27,#200.12,0.38444,-0.90726,-0.17053,334.57,0.85591,0.28109,0.43406,-142.41,-0.34587,-0.31283,0.8846,194.27,#200.13,0.38444,-0.90726,-0.17053,334.57,0.85591,0.28109,0.43406,-142.41,-0.34587,-0.31283,0.8846,194.27
+> view matrix models
+> #200.11,0.38444,-0.90726,-0.17053,335.13,0.85591,0.28109,0.43406,-131.29,-0.34587,-0.31283,0.8846,193.24,#200.12,0.38444,-0.90726,-0.17053,335.13,0.85591,0.28109,0.43406,-131.29,-0.34587,-0.31283,0.8846,193.24,#200.13,0.38444,-0.90726,-0.17053,335.13,0.85591,0.28109,0.43406,-131.29,-0.34587,-0.31283,0.8846,193.24
+> view matrix models
+> #200.11,0.38444,-0.90726,-0.17053,330.64,0.85591,0.28109,0.43406,-129.54,-0.34587,-0.31283,0.8846,193.58,#200.12,0.38444,-0.90726,-0.17053,330.64,0.85591,0.28109,0.43406,-129.54,-0.34587,-0.31283,0.8846,193.58,#200.13,0.38444,-0.90726,-0.17053,330.64,0.85591,0.28109,0.43406,-129.54,-0.34587,-0.31283,0.8846,193.58
+> view matrix models
+> #200.11,0.38444,-0.90726,-0.17053,332.58,0.85591,0.28109,0.43406,-129.63,-0.34587,-0.31283,0.8846,193.72,#200.12,0.38444,-0.90726,-0.17053,332.58,0.85591,0.28109,0.43406,-129.63,-0.34587,-0.31283,0.8846,193.72,#200.13,0.38444,-0.90726,-0.17053,332.58,0.85591,0.28109,0.43406,-129.63,-0.34587,-0.31283,0.8846,193.72
+> view matrix models
+> #200.11,0.38444,-0.90726,-0.17053,332.31,0.85591,0.28109,0.43406,-129.59,-0.34587,-0.31283,0.8846,192.83,#200.12,0.38444,-0.90726,-0.17053,332.31,0.85591,0.28109,0.43406,-129.59,-0.34587,-0.31283,0.8846,192.83,#200.13,0.38444,-0.90726,-0.17053,332.31,0.85591,0.28109,0.43406,-129.59,-0.34587,-0.31283,0.8846,192.83
+> view matrix models
+> #200.11,0.38444,-0.90726,-0.17053,331.47,0.85591,0.28109,0.43406,-130.41,-0.34587,-0.31283,0.8846,192.32,#200.12,0.38444,-0.90726,-0.17053,331.47,0.85591,0.28109,0.43406,-130.41,-0.34587,-0.31283,0.8846,192.32,#200.13,0.38444,-0.90726,-0.17053,331.47,0.85591,0.28109,0.43406,-130.41,-0.34587,-0.31283,0.8846,192.32
+> view matrix models
+> #200.11,0.38444,-0.90726,-0.17053,331.83,0.85591,0.28109,0.43406,-130.34,-0.34587,-0.31283,0.8846,193.73,#200.12,0.38444,-0.90726,-0.17053,331.83,0.85591,0.28109,0.43406,-130.34,-0.34587,-0.31283,0.8846,193.73,#200.13,0.38444,-0.90726,-0.17053,331.83,0.85591,0.28109,0.43406,-130.34,-0.34587,-0.31283,0.8846,193.73
+> view matrix models
+> #200.11,0.38444,-0.90726,-0.17053,331.52,0.85591,0.28109,0.43406,-130.36,-0.34587,-0.31283,0.8846,191.96,#200.12,0.38444,-0.90726,-0.17053,331.52,0.85591,0.28109,0.43406,-130.36,-0.34587,-0.31283,0.8846,191.96,#200.13,0.38444,-0.90726,-0.17053,331.52,0.85591,0.28109,0.43406,-130.36,-0.34587,-0.31283,0.8846,191.96
+> view matrix models
+> #200.11,0.38444,-0.90726,-0.17053,331.44,0.85591,0.28109,0.43406,-130.47,-0.34587,-0.31283,0.8846,193.33,#200.12,0.38444,-0.90726,-0.17053,331.44,0.85591,0.28109,0.43406,-130.47,-0.34587,-0.31283,0.8846,193.33,#200.13,0.38444,-0.90726,-0.17053,331.44,0.85591,0.28109,0.43406,-130.47,-0.34587,-0.31283,0.8846,193.33
+> select subtract #200.11
+models selected
+> view matrix models
+> #200.12,0.38444,-0.90726,-0.17053,333,0.85591,0.28109,0.43406,-130.51,-0.34587,-0.31283,0.8846,129.52,#200.13,0.38444,-0.90726,-0.17053,333,0.85591,0.28109,0.43406,-130.51,-0.34587,-0.31283,0.8846,129.52
+> view matrix models
+> #200.12,0.38444,-0.90726,-0.17053,334.8,0.85591,0.28109,0.43406,-130.87,-0.34587,-0.31283,0.8846,89.193,#200.13,0.38444,-0.90726,-0.17053,334.8,0.85591,0.28109,0.43406,-130.87,-0.34587,-0.31283,0.8846,89.193
+> view matrix models
+> #200.12,0.38444,-0.90726,-0.17053,333.08,0.85591,0.28109,0.43406,-131.51,-0.34587,-0.31283,0.8846,88.918,#200.13,0.38444,-0.90726,-0.17053,333.08,0.85591,0.28109,0.43406,-131.51,-0.34587,-0.31283,0.8846,88.918
+> fitmap #200.12 inMap #200.10
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of S115_glycan.mrc (#200.12) relative to S115_glycan.mrc (#200.10)
+coordinates:
+Matrix rotation and translation
+-0.68314031 0.67827326 -0.27067455 172.23520133
+.66426241 0.42311771 -0.61621981 218.58605187
+-0.30343822 -0.60076353 -0.73960019 598.64752743
+Axis 0.39793249 0.84352332 -0.36071893
+Axis point 38.08139044 0.00000000 345.15438599
+Rotation angle (degrees) 178.88720413
+Shift along axis 36.97691961
+> fitmap #200.12 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.9667, correlation about mean = 0.6849, overlap = 39.26
+steps = 64, shift = 2.26, angle = 32 degrees
+Position of S115_glycan.mrc (#200.12) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.33562595 -0.93497003 0.11483158 275.43120154
+.94186958 0.33507031 -0.02468988 -44.68914391
+-0.01539236 0.11644294 0.99307811 -65.00217146
+Axis 0.07480651 0.06902433 0.99480633
+Axis point 169.56365491 177.87123790 0.00000000
+Rotation angle (degrees) 70.61664027
+Shift along axis -47.14516359
+> select subtract #200.12
+models selected
+> view matrix models
+> #200.13,0.38444,-0.90726,-0.17053,340.69,0.85591,0.28109,0.43406,-126.7,-0.34587,-0.31283,0.8846,36.698
+> view matrix models
+> #200.13,0.38444,-0.90726,-0.17053,343.41,0.85591,0.28109,0.43406,-132.73,-0.34587,-0.31283,0.8846,36.942
+> view matrix models
+> #200.13,0.38444,-0.90726,-0.17053,338.84,0.85591,0.28109,0.43406,-130.63,-0.34587,-0.31283,0.8846,37.086
+> view matrix models
+> #200.13,0.38444,-0.90726,-0.17053,333.74,0.85591,0.28109,0.43406,-130.75,-0.34587,-0.31283,0.8846,35.648
+> view matrix models
+> #200.13,0.38444,-0.90726,-0.17053,335.95,0.85591,0.28109,0.43406,-133.57,-0.34587,-0.31283,0.8846,36.912
+> view matrix models
+> #200.13,0.38444,-0.90726,-0.17053,335.42,0.85591,0.28109,0.43406,-133.54,-0.34587,-0.31283,0.8846,36.434
+> view matrix models
+> #200.13,0.38444,-0.90726,-0.17053,331.58,0.85591,0.28109,0.43406,-137.73,-0.34587,-0.31283,0.8846,89.081
+> view matrix models
+> #200.13,0.38444,-0.90726,-0.17053,331.67,0.85591,0.28109,0.43406,-135.09,-0.34587,-0.31283,0.8846,90.083
+> fitmap #200.13 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.9667, correlation about mean = 0.6853, overlap = 39.27
+steps = 72, shift = 2.25, angle = 32 degrees
+Position of S115_glycan.mrc (#200.13) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.33712156 -0.93471914 0.11246868 275.74061723
+.94137238 0.33631608 -0.02663729 -44.40453103
+-0.01292664 0.11485492 0.99329818 -65.09043648
+Axis 0.07503855 0.06650177 0.99496067
+Axis point 169.66127948 178.45408176 0.00000000
+Rotation angle (degrees) 70.52667850
+Shift along axis -47.02422860
+> view matrix models
+> #200.13,0.31318,-0.94131,0.12595,283.41,0.94929,0.31413,-0.01277,-39.228,-0.027544,0.12356,0.99195,-115.14
+> view matrix models
+> #200.13,0.31318,-0.94131,0.12595,285.17,0.94929,0.31413,-0.01277,-43.152,-0.027544,0.12356,0.99195,-116.06
+> view matrix models
+> #200.13,0.31318,-0.94131,0.12595,281.18,0.94929,0.31413,-0.01277,-40.306,-0.027544,0.12356,0.99195,-114.89
+> view matrix models
+> #200.13,0.31318,-0.94131,0.12595,282.15,0.94929,0.31413,-0.01277,-44.213,-0.027544,0.12356,0.99195,-116.09
+> view matrix models
+> #200.13,0.31318,-0.94131,0.12595,281.3,0.94929,0.31413,-0.01277,-43.975,-0.027544,0.12356,0.99195,-116.59
+> select subtract #200.13
+Nothing selected
+> select add #200.10
+models selected
+> view matrix models
+> #200.10,-0.83184,-0.023426,0.55452,148.79,-0.51154,0.42,-0.74962,310.08,-0.21534,-0.90722,-0.36136,491.89
+> fitmap #200.10 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.94, correlation about mean = 0.5403, overlap = 37.74
+steps = 92, shift = 4.41, angle = 25.2 degrees
+Position of S115_glycan.mrc (#200.10) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.84288312 -0.15057088 0.51660088 186.07718623
+-0.43816758 0.74932419 -0.49651028 176.33083023
+-0.31234154 -0.64485789 -0.69756798 532.44980974
+Axis -0.16670750 0.93153452 -0.32319042
+Axis point 174.31712235 0.00000000 274.18580356
+Rotation angle (degrees) 153.58089568
+Shift along axis -38.84488571
+> view matrix models
+> #200.10,-0.83559,-0.17768,0.51983,190.78,-0.46252,0.73811,-0.49118,184.66,-0.29642,-0.65086,-0.69893,584.84
+> view matrix models
+> #200.10,-0.83559,-0.17768,0.51983,188.67,-0.46252,0.73811,-0.49118,181.28,-0.29642,-0.65086,-0.69893,583.88
+> view matrix models
+> #200.10,-0.83559,-0.17768,0.51983,187.71,-0.46252,0.73811,-0.49118,181.75,-0.29642,-0.65086,-0.69893,584.49
+> view matrix models
+> #200.10,-0.83559,-0.17768,0.51983,188.23,-0.46252,0.73811,-0.49118,181.57,-0.29642,-0.65086,-0.69893,585.13
+> view matrix models
+> #200.10,-0.83559,-0.17768,0.51983,188.34,-0.46252,0.73811,-0.49118,181.13,-0.29642,-0.65086,-0.69893,585.02
+> view matrix models
+> #200.10,-0.83559,-0.17768,0.51983,187.61,-0.46252,0.73811,-0.49118,181.3,-0.29642,-0.65086,-0.69893,584.72
+> view matrix models
+> #200.10,-0.83559,-0.17768,0.51983,187.88,-0.46252,0.73811,-0.49118,181.21,-0.29642,-0.65086,-0.69893,584.84
+> select subtract #200.10
+Nothing selected
+> select add #200.11
+models selected
+> view matrix models
+> #200.11,0.38444,-0.90726,-0.17053,330.71,0.85591,0.28109,0.43406,-134.28,-0.34587,-0.31283,0.8846,143.04
+> fitmap #200.11 inMap #200.10
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0.916, correlation about mean = 0.6643, overlap = 32.34
+steps = 68, shift = 1.3, angle = 25.3 degrees
+Position of S115_glycan.mrc (#200.11) relative to S115_glycan.mrc (#200.10)
+coordinates:
+Matrix rotation and translation
+-0.68310165 0.67904381 -0.26883387 161.72587012
+.66325136 0.42271234 -0.61758554 171.66739180
+-0.30572824 -0.60017814 -0.73913223 579.29043936
+Axis 0.39793005 0.84339882 -0.36101260
+Axis point 44.12137544 0.00000000 325.33725908
+Rotation angle (degrees) 178.74670175
+Shift along axis 0.00851084
+> view matrix models
+> #200.11,0.29402,-0.9545,-0.049863,322.99,0.95567,0.29273,0.031546,-52.75,-0.015514,-0.056927,0.99826,71.461
+> view matrix models
+> #200.11,0.29402,-0.9545,-0.049863,321.84,0.95567,0.29273,0.031546,-52.549,-0.015514,-0.056927,0.99826,73.249
+> view matrix models
+> #200.11,0.29402,-0.9545,-0.049863,322.07,0.95567,0.29273,0.031546,-51.366,-0.015514,-0.056927,0.99826,72.245
+> view matrix models
+> #200.11,0.29402,-0.9545,-0.049863,322.36,0.95567,0.29273,0.031546,-51.333,-0.015514,-0.056927,0.99826,71.884
+> view matrix models
+> #200.11,0.29402,-0.9545,-0.049863,322.38,0.95567,0.29273,0.031546,-51.172,-0.015514,-0.056927,0.99826,71.986
+> select subtract #200.11
+Nothing selected
+> select add #200.12
+models selected
+> select subtract #200.12
+Nothing selected
+> select add #200.14
+models selected
+> select add #200.15
+models selected
+> select add #200.16
+models selected
+> select add #200.17
+models selected
+> view matrix models
+> #200.14,1,0,0,156.19,0,1,0,-48.066,0,0,1,-0.83881,#200.15,1,0,0,156.19,0,1,0,-48.066,0,0,1,-0.83881,#200.16,1,0,0,156.19,0,1,0,-48.066,0,0,1,-0.83881,#200.17,1,0,0,156.19,0,1,0,-48.066,0,0,1,-0.83881
+> view matrix models
+> #200.14,1,0,0,166.72,0,1,0,-30.201,0,0,1,-61.949,#200.15,1,0,0,166.72,0,1,0,-30.201,0,0,1,-61.949,#200.16,1,0,0,166.72,0,1,0,-30.201,0,0,1,-61.949,#200.17,1,0,0,166.72,0,1,0,-30.201,0,0,1,-61.949
+> view matrix models
+> #200.14,1,0,0,133,0,1,0,-83.133,0,0,1,-183.16,#200.15,1,0,0,133,0,1,0,-83.133,0,0,1,-183.16,#200.16,1,0,0,133,0,1,0,-83.133,0,0,1,-183.16,#200.17,1,0,0,133,0,1,0,-83.133,0,0,1,-183.16
+> view matrix models
+> #200.14,1,0,0,29.491,0,1,0,-64.442,0,0,1,-103.13,#200.15,1,0,0,29.491,0,1,0,-64.442,0,0,1,-103.13,#200.16,1,0,0,29.491,0,1,0,-64.442,0,0,1,-103.13,#200.17,1,0,0,29.491,0,1,0,-64.442,0,0,1,-103.13
+> fitmap #200.14 inMap #200.13
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of S115_glycan.mrc (#200.14) relative to S115_glycan.mrc (#200.13)
+coordinates:
+Matrix rotation and translation
+.31317900 0.94929461 -0.02754360 -98.66053838
+-0.94130522 0.31412840 0.12356291 232.26282121
+.12594983 -0.01277038 0.99195440 -18.10077774
+Axis -0.07168970 -0.08071322 -0.99415590
+Axis point 112.56576754 184.89507864 0.00000000
+Rotation angle (degrees) 71.96301149
+Shift along axis 6.32126015
+> fitmap #200.14 inMap #200.13
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of S115_glycan.mrc (#200.14) relative to S115_glycan.mrc (#200.13)
+coordinates:
+Matrix rotation and translation
+.31317900 0.94929461 -0.02754360 -98.66053838
+-0.94130522 0.31412840 0.12356291 232.26282121
+.12594983 -0.01277038 0.99195440 -18.10077774
+Axis -0.07168970 -0.08071322 -0.99415590
+Axis point 112.56576754 184.89507864 0.00000000
+Rotation angle (degrees) 71.96301149
+Shift along axis 6.32126015
+> select subtract #200.17
+models selected
+> select subtract #200.16
+models selected
+> select subtract #200.15
+models selected
+> select subtract #200.14
+Nothing selected
+> select add #200.14
+models selected
+> select add #200.15
+models selected
+> select add #200.16
+models selected
+> select add #200.17
+models selected
+> view matrix models
+> #200.14,1,0,0,33.425,0,1,0,-61.907,0,0,1,-95.768,#200.15,1,0,0,33.425,0,1,0,-61.907,0,0,1,-95.768,#200.16,1,0,0,33.425,0,1,0,-61.907,0,0,1,-95.768,#200.17,1,0,0,33.425,0,1,0,-61.907,0,0,1,-95.768
+> view matrix models
+> #200.14,1,0,0,37.299,0,1,0,-59.458,0,0,1,-94.034,#200.15,1,0,0,37.299,0,1,0,-59.458,0,0,1,-94.034,#200.16,1,0,0,37.299,0,1,0,-59.458,0,0,1,-94.034,#200.17,1,0,0,37.299,0,1,0,-59.458,0,0,1,-94.034
+> view matrix models
+> #200.14,1,0,0,33.241,0,1,0,-54.306,0,0,1,-97.809,#200.15,1,0,0,33.241,0,1,0,-54.306,0,0,1,-97.809,#200.16,1,0,0,33.241,0,1,0,-54.306,0,0,1,-97.809,#200.17,1,0,0,33.241,0,1,0,-54.306,0,0,1,-97.809
+> view matrix models
+> #200.14,1,0,0,35.542,0,1,0,-52.332,0,0,1,-97.759,#200.15,1,0,0,35.542,0,1,0,-52.332,0,0,1,-97.759,#200.16,1,0,0,35.542,0,1,0,-52.332,0,0,1,-97.759,#200.17,1,0,0,35.542,0,1,0,-52.332,0,0,1,-97.759
+> fitmap #200.14 inMap #200.13
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0.9999, correlation about mean = 0.9991, overlap = 45.34
+steps = 100, shift = 1.01, angle = 70.7 degrees
+Position of S115_glycan.mrc (#200.14) relative to S115_glycan.mrc (#200.13)
+coordinates:
+Matrix rotation and translation
+.99964461 0.02214660 -0.01483841 -0.65121993
+-0.02229951 0.99969908 -0.01021992 5.56182679
+.01460761 0.01054717 0.99983767 -3.98599712
+Axis 0.36295251 -0.51463656 -0.77679771
+Axis point 248.90994858 33.36043093 -0.00000000
+Rotation angle (degrees) 1.63937284
+Shift along axis -0.00236788
+> select subtract #200.15
+models selected
+> select subtract #200.16
+models selected
+> select subtract #200.17
+models selected
+> view matrix models
+> #200.14,0.3359,-0.93276,0.1309,279.14,0.94177,0.33492,-0.030065,-36.284,-0.015799,0.13338,0.99094,-174.59
+> view matrix models
+> #200.14,0.3359,-0.93276,0.1309,280.27,0.94177,0.33492,-0.030065,-49.97,-0.015799,0.13338,0.99094,-170.16
+> view matrix models
+> #200.14,0.3359,-0.93276,0.1309,273.09,0.94177,0.33492,-0.030065,-49.327,-0.015799,0.13338,0.99094,-171.86
+> view matrix models
+> #200.14,0.3359,-0.93276,0.1309,276.22,0.94177,0.33492,-0.030065,-46.752,-0.015799,0.13338,0.99094,-171.5
+> view matrix models
+> #200.14,0.3359,-0.93276,0.1309,275.04,0.94177,0.33492,-0.030065,-45.073,-0.015799,0.13338,0.99094,-171.37
+> view matrix models
+> #200.14,0.3359,-0.93276,0.1309,275.21,0.94177,0.33492,-0.030065,-44.847,-0.015799,0.13338,0.99094,-171.71
+> select subtract #200.14
+Nothing selected
+> select add #200.15
+models selected
+> select add #200.16
+models selected
+> select add #200.17
+models selected
+> view matrix models
+> #200.15,1,0,0,66.829,0,1,0,-55.232,0,0,1,-75.706,#200.16,1,0,0,66.829,0,1,0,-55.232,0,0,1,-75.706,#200.17,1,0,0,66.829,0,1,0,-55.232,0,0,1,-75.706
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #200.15,0.38007,-0.91527,0.13353,295.25,0.87703,0.40247,0.26239,-121.2,-0.2939,0.017386,0.95568,-28.751,#200.16,0.38007,-0.91527,0.13353,295.25,0.87703,0.40247,0.26239,-121.2,-0.2939,0.017386,0.95568,-28.751,#200.17,0.38007,-0.91527,0.13353,295.25,0.87703,0.40247,0.26239,-121.2,-0.2939,0.017386,0.95568,-28.751
+> view matrix models
+> #200.15,0.35992,-0.92154,0.14564,296.23,0.89755,0.38462,0.21558,-109.13,-0.25468,0.053129,0.96556,-43.359,#200.16,0.35992,-0.92154,0.14564,296.23,0.89755,0.38462,0.21558,-109.13,-0.25468,0.053129,0.96556,-43.359,#200.17,0.35992,-0.92154,0.14564,296.23,0.89755,0.38462,0.21558,-109.13,-0.25468,0.053129,0.96556,-43.359
+> view matrix models
+> #200.15,0.30916,-0.93601,0.16826,300.37,0.93189,0.33347,0.14279,-86.146,-0.18976,0.11265,0.97535,-66.013,#200.16,0.30916,-0.93601,0.16826,300.37,0.93189,0.33347,0.14279,-86.146,-0.18976,0.11265,0.97535,-66.013,#200.17,0.30916,-0.93601,0.16826,300.37,0.93189,0.33347,0.14279,-86.146,-0.18976,0.11265,0.97535,-66.013
+> view matrix models
+> #200.15,0.021115,-0.97864,0.20451,338.6,0.98296,0.057684,0.17454,-47.276,-0.18261,0.19734,0.96318,-80.435,#200.16,0.021115,-0.97864,0.20451,338.6,0.98296,0.057684,0.17454,-47.276,-0.18261,0.19734,0.96318,-80.435,#200.17,0.021115,-0.97864,0.20451,338.6,0.98296,0.057684,0.17454,-47.276,-0.18261,0.19734,0.96318,-80.435
+> ui mousemode right "translate selected models"
+> view matrix models
+> #200.15,0.021115,-0.97864,0.20451,333.55,0.98296,0.057684,0.17454,-33.893,-0.18261,0.19734,0.96318,-23.266,#200.16,0.021115,-0.97864,0.20451,333.55,0.98296,0.057684,0.17454,-33.893,-0.18261,0.19734,0.96318,-23.266,#200.17,0.021115,-0.97864,0.20451,333.55,0.98296,0.057684,0.17454,-33.893,-0.18261,0.19734,0.96318,-23.266
+> view matrix models
+> #200.15,0.021115,-0.97864,0.20451,327.04,0.98296,0.057684,0.17454,-48.41,-0.18261,0.19734,0.96318,-21.77,#200.16,0.021115,-0.97864,0.20451,327.04,0.98296,0.057684,0.17454,-48.41,-0.18261,0.19734,0.96318,-21.77,#200.17,0.021115,-0.97864,0.20451,327.04,0.98296,0.057684,0.17454,-48.41,-0.18261,0.19734,0.96318,-21.77
+> view matrix models
+> #200.15,0.021115,-0.97864,0.20451,336.04,0.98296,0.057684,0.17454,-39.677,-0.18261,0.19734,0.96318,28.48,#200.16,0.021115,-0.97864,0.20451,336.04,0.98296,0.057684,0.17454,-39.677,-0.18261,0.19734,0.96318,28.48,#200.17,0.021115,-0.97864,0.20451,336.04,0.98296,0.057684,0.17454,-39.677,-0.18261,0.19734,0.96318,28.48
+> view matrix models
+> #200.15,0.021115,-0.97864,0.20451,341.66,0.98296,0.057684,0.17454,-48.583,-0.18261,0.19734,0.96318,27.714,#200.16,0.021115,-0.97864,0.20451,341.66,0.98296,0.057684,0.17454,-48.583,-0.18261,0.19734,0.96318,27.714,#200.17,0.021115,-0.97864,0.20451,341.66,0.98296,0.057684,0.17454,-48.583,-0.18261,0.19734,0.96318,27.714
+> view matrix models
+> #200.15,0.021115,-0.97864,0.20451,334.94,0.98296,0.057684,0.17454,-51.318,-0.18261,0.19734,0.96318,30.534,#200.16,0.021115,-0.97864,0.20451,334.94,0.98296,0.057684,0.17454,-51.318,-0.18261,0.19734,0.96318,30.534,#200.17,0.021115,-0.97864,0.20451,334.94,0.98296,0.057684,0.17454,-51.318,-0.18261,0.19734,0.96318,30.534
+> fitmap #200.15 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.9237, correlation about mean = 0.6007, overlap = 32.05
+steps = 60, shift = 3.04, angle = 22.8 degrees
+Position of S115_glycan.mrc (#200.15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.15860878 -0.97787496 -0.13639578 439.23030826
+.97838690 -0.17422649 0.11137413 10.33384629
+-0.13267373 -0.11578293 0.98437391 78.17524711
+Axis -0.11534271 -0.00188993 0.99332396
+Axis point 219.77032920 191.96060987 0.00000000
+Rotation angle (degrees) 100.03389176
+Shift along axis 26.97180013
+> fitmap #200.16 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.9237, correlation about mean = 0.6007, overlap = 32.05
+steps = 60, shift = 3.04, angle = 22.8 degrees
+Position of S115_glycan.mrc (#200.16) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.15860878 -0.97787496 -0.13639578 439.23030826
+.97838690 -0.17422649 0.11137413 10.33384629
+-0.13267373 -0.11578293 0.98437391 78.17524711
+Axis -0.11534271 -0.00188993 0.99332396
+Axis point 219.77032920 191.96060987 0.00000000
+Rotation angle (degrees) 100.03389176
+Shift along axis 26.97180013
+> fitmap #200.17 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.9237, correlation about mean = 0.6007, overlap = 32.05
+steps = 60, shift = 3.04, angle = 22.8 degrees
+Position of S115_glycan.mrc (#200.17) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.15860878 -0.97787496 -0.13639578 439.23030826
+.97838690 -0.17422649 0.11137413 10.33384629
+-0.13267373 -0.11578293 0.98437391 78.17524711
+Axis -0.11534271 -0.00188993 0.99332396
+Axis point 219.77032920 191.96060987 0.00000000
+Rotation angle (degrees) 100.03389176
+Shift along axis 26.97180013
+> select subtract #200.15
+models selected
+> view matrix models
+> #200.16,-0.18483,-0.97461,-0.1264,441.57,0.97259,-0.19987,0.11888,15.231,-0.14112,-0.10096,0.98483,128.92,#200.17,-0.18483,-0.97461,-0.1264,441.57,0.97259,-0.19987,0.11888,15.231,-0.14112,-0.10096,0.98483,128.92
+> view matrix models
+> #200.16,-0.18483,-0.97461,-0.1264,439.44,0.97259,-0.19987,0.11888,15.675,-0.14112,-0.10096,0.98483,129.14,#200.17,-0.18483,-0.97461,-0.1264,439.44,0.97259,-0.19987,0.11888,15.675,-0.14112,-0.10096,0.98483,129.14
+> view matrix models
+> #200.16,-0.18483,-0.97461,-0.1264,440.23,0.97259,-0.19987,0.11888,16.639,-0.14112,-0.10096,0.98483,129.39,#200.17,-0.18483,-0.97461,-0.1264,440.23,0.97259,-0.19987,0.11888,16.639,-0.14112,-0.10096,0.98483,129.39
+> view matrix models
+> #200.16,-0.18483,-0.97461,-0.1264,440.69,0.97259,-0.19987,0.11888,16.729,-0.14112,-0.10096,0.98483,128.95,#200.17,-0.18483,-0.97461,-0.1264,440.69,0.97259,-0.19987,0.11888,16.729,-0.14112,-0.10096,0.98483,128.95
+> view matrix models
+> #200.16,-0.18483,-0.97461,-0.1264,440.87,0.97259,-0.19987,0.11888,17.196,-0.14112,-0.10096,0.98483,129.27,#200.17,-0.18483,-0.97461,-0.1264,440.87,0.97259,-0.19987,0.11888,17.196,-0.14112,-0.10096,0.98483,129.27
+> view matrix models
+> #200.16,-0.18483,-0.97461,-0.1264,440.25,0.97259,-0.19987,0.11888,17.061,-0.14112,-0.10096,0.98483,128.9,#200.17,-0.18483,-0.97461,-0.1264,440.25,0.97259,-0.19987,0.11888,17.061,-0.14112,-0.10096,0.98483,128.9
+> select subtract #200.16
+models selected
+> view matrix models
+> #200.17,-0.18483,-0.97461,-0.1264,443.32,0.97259,-0.19987,0.11888,15.658,-0.14112,-0.10096,0.98483,24.911
+> view matrix models
+> #200.17,-0.18483,-0.97461,-0.1264,443.64,0.97259,-0.19987,0.11888,16.542,-0.14112,-0.10096,0.98483,25.368
+> view matrix models
+> #200.17,-0.18483,-0.97461,-0.1264,443.2,0.97259,-0.19987,0.11888,16.686,-0.14112,-0.10096,0.98483,24.768
+> view matrix models
+> #200.17,-0.18483,-0.97461,-0.1264,443.06,0.97259,-0.19987,0.11888,16.664,-0.14112,-0.10096,0.98483,24.495
+> select subtract #200.17
+Nothing selected
+> select add #200.18
+models selected
+> view matrix models #200.18,1,0,0,123.3,0,1,0,-18.767,0,0,1,-25.338
+> view matrix models #200.18,1,0,0,65.299,0,1,0,-47.996,0,0,1,-29.518
+> view matrix models #200.18,1,0,0,64.992,0,1,0,-47.526,0,0,1,-18.366
+> view matrix models #200.18,1,0,0,64.861,0,1,0,-50.347,0,0,1,-22.668
+> view matrix models #200.18,1,0,0,64.225,0,1,0,-49.122,0,0,1,-17.701
+> view matrix models #200.18,1,0,0,63.555,0,1,0,-55.683,0,0,1,-21.952
+> fitmap #200.18 inMap #200.17
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0.9998, correlation about mean = 0.999, overlap = 45.3
+steps = 160, shift = 4.14, angle = 100 degrees
+Position of S115_glycan.mrc (#200.18) relative to S115_glycan.mrc (#200.17)
+coordinates:
+Matrix rotation and translation
+.99962849 0.02298561 -0.01464787 -0.85151486
+-0.02318446 0.99963933 -0.01355317 6.49215373
+.01433106 0.01388774 0.99980086 -4.57875432
+Axis 0.44964223 -0.47484379 -0.75653502
+Axis point 279.34199258 41.52834981 0.00000000
+Rotation angle (degrees) 1.74860439
+Shift along axis -0.00164792
+> view matrix models
+> #200.18,-0.16398,-0.98026,-0.11046,441.91,0.97856,-0.17579,0.10732,-4.8449,-0.12461,-0.09049,0.98807,-25.053
+> view matrix models
+> #200.18,-0.16398,-0.98026,-0.11046,433.21,0.97856,-0.17579,0.10732,1.6952,-0.12461,-0.09049,0.98807,-30.622
+> view matrix models
+> #200.18,-0.16398,-0.98026,-0.11046,443.21,0.97856,-0.17579,0.10732,5.9496,-0.12461,-0.09049,0.98807,-30.67
+> view matrix models
+> #200.18,-0.16398,-0.98026,-0.11046,440.15,0.97856,-0.17579,0.10732,10.657,-0.12461,-0.09049,0.98807,-31.492
+> view matrix models
+> #200.18,-0.16398,-0.98026,-0.11046,439.12,0.97856,-0.17579,0.10732,10.467,-0.12461,-0.09049,0.98807,-31.682
+> view matrix models
+> #200.18,-0.16398,-0.98026,-0.11046,439.12,0.97856,-0.17579,0.10732,13.647,-0.12461,-0.09049,0.98807,-30.579
+> view matrix models
+> #200.18,-0.16398,-0.98026,-0.11046,439.28,0.97856,-0.17579,0.10732,14.172,-0.12461,-0.09049,0.98807,-32.493
+> select subtract #200.18
+Nothing selected
+> color #100 #ff1721ff models
+> show #!100 models
+> color #100 #fdd900ff models
+> color #100 #febe0eff models
+> hide #!100 models
+> hide #!200 models
+> show #!200 models
+> hide #!200 models
+> select add #200
+models selected
+> show #!200 models
+> select subtract #200
+Nothing selected
+> color #200 #80e388ff models
+> color #200 #ff1721ff models
+> color #200.10 #ff1721ff models
+> color #200.11 #ff1721ff models
+> color #200.12 #ff1721ff models
+> select add #200.13
+models selected
+> select add #200.14
+models selected
+> select add #200.15
+models selected
+> select add #200.16
+models selected
+> select subtract #200.16
+models selected
+> select subtract #200.15
+models selected
+> select subtract #200.14
+models selected
+> select subtract #200.13
+Nothing selected
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #14, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> vop add #200.1-200.18
+> hide #!14 models
+> show #!14 models
+> hide #!200 models
+> hide #!14 models
+> show #!14 models
+> volume #14 level 0.4986
+> volume #14 level 0.204
+> color #14 #ff1721ff models
+> volume #14 level 0.06244
+> volume #14 level 0.055
+> select add #14
+models selected
+> hide #14.1 models
+> show #14.1 models
+> hide #!14 models
+> select subtract #14
+Nothing selected
+> vop add #200.1-200.18
+> vop add #200
+Opened volume sum as #15, grid size 75,68,238, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> hide #!15 models
+> show #!15 models
+> close #14
+> hide #!15 models
+> show #!15 models
+> color #15 #ff1721ff models
+> show #!200 models
+> hide #!200 models
+> show #!200.1-18 target m
+> select add #15
+models selected
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,-0.76578,-0.62633,0.14592,375.04,0.62938,-0.77652,-0.030062,194.5,0.13214,0.068819,0.98884,20.311
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,-0.76578,-0.62633,0.14592,451.89,0.62938,-0.77652,-0.030062,317.95,0.13214,0.068819,0.98884,17.835
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,-0.77304,-0.63435,0.0011443,477.46,0.62796,-0.76499,0.14302,288.75,-0.08985,0.11128,0.98972,47.76
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,-0.77304,-0.63435,0.0011443,475.75,0.62796,-0.76499,0.14302,288.01,-0.08985,0.11128,0.98972,53.561
+> view matrix models
+> #15,-0.77304,-0.63435,0.0011443,477.1,0.62796,-0.76499,0.14302,289.12,-0.08985,0.11128,0.98972,53.54
+> view matrix models
+> #15,-0.77304,-0.63435,0.0011443,497.91,0.62796,-0.76499,0.14302,291.37,-0.08985,0.11128,0.98972,53.049
+> view matrix models
+> #15,-0.77304,-0.63435,0.0011443,438.88,0.62796,-0.76499,0.14302,201.48,-0.08985,0.11128,0.98972,68.859
+> view matrix models
+> #15,-0.77304,-0.63435,0.0011443,475.83,0.62796,-0.76499,0.14302,196.03,-0.08985,0.11128,0.98972,67.118
+> view matrix models
+> #15,-0.77304,-0.63435,0.0011443,461.16,0.62796,-0.76499,0.14302,175.7,-0.08985,0.11128,0.98972,56.384
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,-0.77586,-0.62674,-0.072378,472.08,0.62448,-0.77922,0.053395,192.88,-0.089863,-0.0037716,0.99595,74.322
+> view matrix models
+> #15,-0.77556,-0.62794,-0.064705,471.01,0.62484,-0.77821,0.062877,191.15,-0.089838,0.0083342,0.99592,72.33
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,-0.77556,-0.62794,-0.064705,474.47,0.62484,-0.77821,0.062877,196.12,-0.089838,0.0083342,0.99592,75.693
+> view matrix models
+> #15,-0.77556,-0.62794,-0.064705,463.34,0.62484,-0.77821,0.062877,196.94,-0.089838,0.0083342,0.99592,75.761
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,-0.77608,-0.63019,-0.023842,457.29,0.62811,-0.7758,0.060073,196.44,-0.056354,0.031646,0.99791,66.021
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,-0.77608,-0.63019,-0.023842,460.75,0.62811,-0.7758,0.060073,201.01,-0.056354,0.031646,0.99791,65.846
+> view matrix models
+> #15,-0.77608,-0.63019,-0.023842,451.09,0.62811,-0.7758,0.060073,200.33,-0.056354,0.031646,0.99791,65.011
+> view matrix models
+> #15,-0.77608,-0.63019,-0.023842,454.98,0.62811,-0.7758,0.060073,205.41,-0.056354,0.031646,0.99791,65.266
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,-0.77425,-0.63286,0.004753,450.56,0.63199,-0.77274,0.058883,204.45,-0.033592,0.048594,0.99825,58.625
+> view matrix models
+> #15,-0.74917,-0.66207,-0.019922,455.11,0.66128,-0.74932,0.034972,199.52,-0.038082,0.013026,0.99919,65.076
+> ui mousemode right zoom
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,-0.74917,-0.66207,-0.019922,457.01,0.66128,-0.74932,0.034972,196.4,-0.038082,0.013026,0.99919,64.547
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,-0.74899,-0.66243,-0.01427,456.14,0.66137,-0.74875,0.044166,194.83,-0.039941,0.023642,0.99892,63.154
+> view matrix models
+> #15,-0.61168,-0.79109,0.0049161,451.33,0.79092,-0.6114,0.024976,153.67,-0.016753,0.019166,0.99968,59.9
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,-0.61168,-0.79109,0.0049161,455.43,0.79092,-0.6114,0.024976,160.28,-0.016753,0.019166,0.99968,59.119
+> view matrix models
+> #15,-0.61168,-0.79109,0.0049161,460.46,0.79092,-0.6114,0.024976,159.44,-0.016753,0.019166,0.99968,60.888
+> view matrix models
+> #15,-0.61168,-0.79109,0.0049161,459.59,0.79092,-0.6114,0.024976,158.01,-0.016753,0.019166,0.99968,61.738
+> view matrix models
+> #15,-0.61168,-0.79109,0.0049161,459.62,0.79092,-0.6114,0.024976,156.51,-0.016753,0.019166,0.99968,61.597
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 1878 points
+correlation = 0.6462, correlation about mean = 0.2484, overlap = 278.4
+steps = 68, shift = 2.5, angle = 2.44 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.62438026 -0.78095348 -0.01615380 461.45932268
+.78093750 -0.62454812 0.00873251 160.47769295
+-0.01690851 -0.00716270 0.99983138 65.99341982
+Axis -0.01017637 0.00048318 0.99994810
+Axis point 192.49654025 191.29984707 0.00000000
+Rotation angle (degrees) 128.64905635
+Shift along axis 61.37155120
+> hide #!15 models
+> select subtract #15
+Nothing selected
+> show #!15 models
+> vop add #200
+Opened volume sum as #14, grid size 75,68,238, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> color #14 #ff1721ff models
+> select add #14
+models selected
+> view matrix models #14,1,0,0,-25.458,0,1,0,196.87,0,0,1,59.253
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14,-0.32122,0.94447,-0.069215,50.694,-0.94434,-0.32493,-0.051356,580.62,-0.070995,0.048866,0.99628,63.655
+> view matrix models
+> #14,-0.79219,0.59775,-0.12298,194.9,-0.59406,-0.80147,-0.068853,603.33,-0.13972,0.018514,0.99002,81.116
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14,-0.79219,0.59775,-0.12298,256.08,-0.59406,-0.80147,-0.068853,485.8,-0.13972,0.018514,0.99002,80.904
+> view matrix models
+> #14,-0.79219,0.59775,-0.12298,209.92,-0.59406,-0.80147,-0.068853,483.45,-0.13972,0.018514,0.99002,84.995
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14,-0.072708,0.99714,0.020563,1.2917,-0.97647,-0.066973,-0.20501,448.12,-0.20305,-0.034985,0.97854,106.19
+> view matrix models
+> #14,-0.040115,0.99486,-0.092956,14.295,-0.99716,-0.045789,-0.059734,424.96,-0.063684,0.090296,0.99388,59.881
+> view matrix models
+> #14,-0.010196,0.99602,-0.088594,8.4178,-0.9981,-0.015527,-0.059698,420.13,-0.060836,0.087817,0.99428,59.75
+> view matrix models
+> #14,-0.020774,0.99973,0.010148,-6.1446,-0.99978,-0.020784,0.00091665,411.63,0.0011273,-0.010126,0.99995,64.618
+> view matrix models
+> #14,-0.18477,0.98278,0.0030574,25.144,-0.98277,-0.18478,0.003357,435.39,0.0038642,-0.0023844,0.99999,62.881
+> view matrix models
+> #14,-0.18482,0.98275,-0.0071359,26.78,-0.98263,-0.18491,-0.015733,438.42,-0.016781,0.0041042,0.99985,65.281
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14,-0.18482,0.98275,-0.0071359,37.948,-0.98263,-0.18491,-0.015733,424.46,-0.016781,0.0041042,0.99985,71.605
+> view matrix models
+> #14,-0.18482,0.98275,-0.0071359,39.058,-0.98263,-0.18491,-0.015733,424.31,-0.016781,0.0041042,0.99985,74.863
+> view matrix models
+> #14,-0.18482,0.98275,-0.0071359,35.808,-0.98263,-0.18491,-0.015733,419.63,-0.016781,0.0041042,0.99985,72.474
+> view matrix models
+> #14,-0.18482,0.98275,-0.0071359,36.138,-0.98263,-0.18491,-0.015733,416.73,-0.016781,0.0041042,0.99985,19.293
+> view matrix models
+> #14,-0.18482,0.98275,-0.0071359,37.106,-0.98263,-0.18491,-0.015733,416.86,-0.016781,0.0041042,0.99985,20.332
+> fitmap #14 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 1878 points
+correlation = 0.7253, correlation about mean = 0.359, overlap = 330.7
+steps = 80, shift = 1.5, angle = 3.08 degrees
+Position of volume sum (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.16033831 0.98688927 -0.01847279 36.87800583
+-0.98701393 -0.16048737 -0.00688126 411.41533977
+-0.00975569 0.01712957 0.99980570 16.86740547
+Axis 0.01216312 -0.00441580 -0.99991628
+Axis point 193.47999995 189.89209109 0.00000000
+Rotation angle (degrees) 99.23649863
+Shift along axis -18.23417008
+> view matrix models
+> #14,-0.13561,0.99075,-0.0053513,29.033,-0.99076,-0.13559,0.0037811,406.67,0.0030205,0.0058146,0.99998,15.723
+> fitmap #14 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 1878 points
+correlation = 0.7253, correlation about mean = 0.3589, overlap = 330.8
+steps = 68, shift = 0.677, angle = 0.00823 degrees
+Position of volume sum (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.16031977 0.98689027 -0.01858026 36.89134104
+-0.98701586 -0.16047149 -0.00697494 411.42277016
+-0.00986511 0.01722079 0.99980306 16.87037551
+Axis 0.01225675 -0.00441481 -0.99991514
+Axis point 193.49369691 189.88914062 0.00000000
+Rotation angle (degrees) 99.23557660
+Shift along axis -18.23312857
+> select subtract #14
+Nothing selected
+> select add #15
+models selected
+> select subtract #15
+Nothing selected
+> show #!200#!200.1-18 target m
+> select add #200
+models selected
+> select add #14
+models selected
+> select subtract #14
+models selected
+> select add #14
+models selected
+> select subtract #14
+models selected
+> select add #14
+models selected
+> select subtract #200
+models selected
+> select add #200
+models selected
+> select subtract #14
+models selected
+> select add #14
+models selected
+> select subtract #14
+models selected
+> select add #14
+models selected
+> ui mousemode right "rotate selected models"
+> select subtract #14
+models selected
+> select add #14
+models selected
+> select add #15
+models selected
+> select subtract #15
+models selected
+> select subtract #14
+models selected
+> select add #14
+models selected
+> select subtract #14
+models selected
+> ui mousemode right select
+> select clear
+> select #14
+models selected
+> select clear
+> select #14
+models selected
+> select #200.4
+models selected
+> hide #!14 models
+> show #!14 models
+> hide #!15 models
+> select add #200
+models selected
+> select subtract #200
+Nothing selected
+> hide #!200 models
+> hide #!6 models
+> hide #!5 models
+> show #!200 models
+> hide #!200 models
+> show #!200 models
+> hide #!200 models
+> ui tool show "Map Eraser"
+> select add #16
+model selected
+> select add #14
+models selected
+> select subtract #14
+model selected
+> volume erase #14 center 138.51,196.77,297.11 radius 10.899
+> volume erase #14 center 138.96,198.34,241.52 radius 10.899
+> show #!6 models
+> hide #!6 models
+> volume erase #14 center 161.5,191.66,208.89 radius 10.803
+> volume erase #14 center 141.04,196.25,183.81 radius 10.803
+> volume erase #14 center 139.75,189.15,189.74 radius 10.803
+> volume erase #14 center 136.33,194.16,137.79 radius 10.803
+> select subtract #16
+Nothing selected
+> hide #16 models
+> close #16
+> show #!200 models
+> show #!15 models
+> show #!6 models
+> show #!5 models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #16, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #21, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> rename #16 id #200
+> rename #21 id #200
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #16, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> rename #21 id #200
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #21, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> rename #21 id #200
+> rename #16 id #200
+> ui mousemode right select
+> select #5.16/AF:115
+atoms, 5 bonds, 1 residue, 1 model selected
+> select clear
+> select #5.16/AF:115
+atoms, 5 bonds, 1 residue, 1 model selected
+> select add #5.18/AH:115
+atoms, 10 bonds, 2 residues, 2 models selected
+> select add #5.19/AI:115
+atoms, 15 bonds, 3 residues, 3 models selected
+> select add #5.23/AM:115
+atoms, 20 bonds, 4 residues, 4 models selected
+> select add #5.24/AN:115
+atoms, 25 bonds, 5 residues, 5 models selected
+> select add #5.3/2:115
+atoms, 30 bonds, 6 residues, 6 models selected
+> select add #5.26/AP:115
+atoms, 35 bonds, 7 residues, 7 models selected
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #16, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> rename #16 id #200
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #16, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> rename #16 id #200
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan.mrc
+Opened S115_glycan.mrc as #16, grid size 9,10,12, pixel 1.07,1.07,1.07, shown
+at level 1.08, step 1, values float32
+> rename #16 id #200
+> select clear
+> select add #200.19
+models selected
+> select clear
+> select add #200.19
+models selected
+> ui mousemode right "translate selected models"
+> volume #200.25 level 0.055
+> volume #200.24 level 0.055
+> volume #200.23 level 0.055
+> volume #200.21 level 0.055
+> volume #200.22 level 0.055
+> volume #200.20 level 0.055
+> volume #200.19 level 0.055
+> view matrix models #200.19,1,0,0,2.9031,0,1,0,-6.1338,0,0,1,-156.08
+> view matrix models #200.19,1,0,0,2.9737,0,1,0,-6.8761,0,0,1,-156.15
+> select subtract #200.19
+Nothing selected
+> select add #200.20
+models selected
+> view matrix models #200.20,1,0,0,110.78,0,1,0,-84.339,0,0,1,-1.0536
+> view matrix models #200.20,1,0,0,62.698,0,1,0,-74.95,0,0,1,-122.91
+> select subtract #200.20
+Nothing selected
+> select add #200.21
+models selected
+> view matrix models #200.21,1,0,0,137.71,0,1,0,-17.898,0,0,1,11.401
+> view matrix models #200.21,1,0,0,149.34,0,1,0,-14.701,0,0,1,-164.36
+> view matrix models #200.21,1,0,0,68.213,0,1,0,-29.894,0,0,1,-176.68
+> view matrix models #200.21,1,0,0,81.937,0,1,0,-52.995,0,0,1,-179.03
+> view matrix models #200.21,1,0,0,65.995,0,1,0,-53.089,0,0,1,-173.9
+> select subtract #200.21
+Nothing selected
+> select add #200.22
+models selected
+> select subtract #200.22
+Nothing selected
+> select add #200.21
+models selected
+> view matrix models #200.21,1,0,0,68.407,0,1,0,-55.515,0,0,1,-173.97
+> select add #200.20
+models selected
+> select subtract #200.21
+models selected
+> view matrix models #200.20,1,0,0,74.84,0,1,0,-62.59,0,0,1,-123.2
+> view matrix models #200.20,1,0,0,66,0,1,0,-55.235,0,0,1,-121.88
+> select add #200.22
+models selected
+> select subtract #200.20
+models selected
+> view matrix models #200.22,1,0,0,151.26,0,1,0,-58.323,0,0,1,0.85766
+> view matrix models #200.22,1,0,0,164.39,0,1,0,-14.676,0,0,1,-174.8
+> view matrix models #200.22,1,0,0,109.04,0,1,0,-14.596,0,0,1,-171.45
+> view matrix models #200.22,1,0,0,109.6,0,1,0,-13.79,0,0,1,-168.82
+> view matrix models #200.22,1,0,0,107.62,0,1,0,-14.119,0,0,1,-169.16
+> select subtract #200.22
+Nothing selected
+> select add #200.23
+models selected
+> view matrix models #200.23,1,0,0,137.11,0,1,0,64.458,0,0,1,-132.66
+> view matrix models #200.23,1,0,0,104.24,0,1,0,41.325,0,0,1,-97.94
+> view matrix models #200.23,1,0,0,89.065,0,1,0,47.36,0,0,1,-115.03
+> view matrix models #200.23,1,0,0,90.186,0,1,0,45.15,0,0,1,-116.45
+> view matrix models #200.23,1,0,0,89.213,0,1,0,44.662,0,0,1,-115.09
+> select subtract #200.23
+Nothing selected
+> select add #200.24
+models selected
+> view matrix models #200.24,1,0,0,125.46,0,1,0,-18.871,0,0,1,-153.99
+> view matrix models #200.24,1,0,0,93.374,0,1,0,49.685,0,0,1,-164.82
+> view matrix models #200.24,1,0,0,92.607,0,1,0,40.212,0,0,1,-165.51
+> view matrix models #200.24,1,0,0,85.213,0,1,0,44.488,0,0,1,-166.7
+> select subtract #200.24
+Nothing selected
+> select add #200.25
+models selected
+> view matrix models #200.25,1,0,0,150.25,0,1,0,-13.331,0,0,1,-160.81
+> view matrix models #200.25,1,0,0,130.75,0,1,0,-60.541,0,0,1,-149.98
+> view matrix models #200.25,1,0,0,97.514,0,1,0,-61.19,0,0,1,-146.43
+> view matrix models #200.25,1,0,0,104.6,0,1,0,-43.005,0,0,1,-146.94
+> view matrix models #200.25,1,0,0,92.028,0,1,0,-42.379,0,0,1,-147.53
+> select add #200.19
+models selected
+> select subtract #200.25
+models selected
+> select subtract #200.19
+Nothing selected
+> select add #200.20
+models selected
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #200.20,0.71975,-0.69404,0.01606,234.35,0.69399,0.71992,0.0095421,-96.668,-0.018185,0.0042778,0.99983,-120.22
+> view matrix models
+> #200.20,-0.32252,-0.94259,-0.086614,447.77,0.93237,-0.33214,0.14273,42.825,-0.1633,-0.034723,0.98596,-89.758
+> ui mousemode right "translate selected models"
+> view matrix models
+> #200.20,-0.32252,-0.94259,-0.086614,448.47,0.93237,-0.33214,0.14273,42.909,-0.1633,-0.034723,0.98596,-38.325
+> ui mousemode right select
+> ui mousemode right "translate selected models"
+> select subtract #200.20
+Nothing selected
+> select add #200.22
+models selected
+> select subtract #200.22
+Nothing selected
+> select add #200.21
+models selected
+> view matrix models #200.21,1,0,0,65.689,0,1,0,-56.269,0,0,1,-70.692
+> ui mousemode right select
+> select #200.18
+models selected
+> select clear
+> fitmap #200.20 inMap #200.18
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 1, correlation about mean = 0.9996, overlap = 45.72
+steps = 56, shift = 1.35, angle = 9.91 degrees
+Position of S115_glycan.mrc (#200.20) relative to S115_glycan.mrc (#200.18)
+coordinates:
+Matrix rotation and translation
+.99999798 -0.00047830 -0.00194912 0.55441134
+.00048106 0.99999889 0.00141128 -0.40065779
+.00194844 -0.00141221 0.99999710 0.00422138
+Axis -0.57534257 -0.79420707 0.19548926
+Axis point -1.73841123 0.00000000 284.45979856
+Rotation angle (degrees) 0.14058927
+Shift along axis 0.00005403
+> fitmap #200.21 inMap #200.18
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0.9999, correlation about mean = 0.9994, overlap = 45.48
+steps = 156, shift = 1.53, angle = 99 degrees
+Position of S115_glycan.mrc (#200.21) relative to S115_glycan.mrc (#200.18)
+coordinates:
+Matrix rotation and translation
+.99976448 0.01796320 -0.01217814 -0.49672137
+-0.01809029 0.99978219 -0.01040781 5.01499573
+.01198853 0.01062566 0.99987168 -3.64924175
+Axis 0.43609297 -0.50105451 -0.74750739
+Axis point 276.80066610 31.24330475 0.00000000
+Rotation angle (degrees) 1.38186796
+Shift along axis -0.00156777
+> select add #200.21
+models selected
+> select add #200.20
+models selected
+Drag select of 200.18 S115_glycan.mrc , 200.20 S115_glycan.mrc , 200.21
+S115_glycan.mrc , 6 J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone , 1430
+residues, 29 volume sum
+> select clear
+> ui mousemode right "translate selected models"
+> select add #200.20
+models selected
+> select add #200.21
+models selected
+> view matrix models
+> #200.20,-0.16467,-0.98002,-0.11152,440.39,0.97868,-0.17641,0.10516,15.041,-0.12273,-0.091825,0.98818,-84.398,#200.21,-0.14753,-0.98417,-0.098242,435.66,0.9828,-0.15703,0.097214,12.668,-0.1111,-0.082209,0.9904,-88.367
+> view matrix models
+> #200.20,-0.16467,-0.98002,-0.11152,440.41,0.97868,-0.17641,0.10516,14.986,-0.12273,-0.091825,0.98818,-84.615,#200.21,-0.14753,-0.98417,-0.098242,435.68,0.9828,-0.15703,0.097214,12.613,-0.1111,-0.082209,0.9904,-88.584
+> select subtract #200.20
+models selected
+> view matrix models
+> #200.21,-0.14753,-0.98417,-0.098242,436.36,0.9828,-0.15703,0.097214,8.0037,-0.1111,-0.082209,0.9904,-140.06
+> view matrix models
+> #200.21,-0.14753,-0.98417,-0.098242,437.42,0.9828,-0.15703,0.097214,9.8967,-0.1111,-0.082209,0.9904,-141.75
+> view matrix models
+> #200.21,-0.14753,-0.98417,-0.098242,437.55,0.9828,-0.15703,0.097214,10.895,-0.1111,-0.082209,0.9904,-141.9
+> view matrix models
+> #200.21,-0.14753,-0.98417,-0.098242,436.91,0.9828,-0.15703,0.097214,10.634,-0.1111,-0.082209,0.9904,-141.32
+> select subtract #200.21
+Nothing selected
+> select add #200.22
+models selected
+> select add #200.23
+models selected
+> select subtract #200.23
+models selected
+> select subtract #200.22
+Nothing selected
+> select add #200.22
+models selected
+> view matrix models #200.22,1,0,0,111.51,0,1,0,-18.757,0,0,1,-119.27
+> view matrix models #200.22,1,0,0,111.11,0,1,0,-17.53,0,0,1,-116.18
+> fitmap #200.22 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.9509, correlation about mean = 0.5784, overlap = 32.61
+steps = 72, shift = 4.27, angle = 70.8 degrees
+Position of S115_glycan.mrc (#200.22) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.86162127 0.27344299 0.42759528 -28.28748852
+.27108460 0.46430872 -0.84316698 254.54871454
+-0.42909432 0.84240509 0.32593209 -59.94153521
+Axis 0.89146582 0.45308623 -0.00124731
+Axis point 0.00000000 181.52654954 138.10158822
+Rotation angle (degrees) 70.97800893
+Shift along axis 90.18995343
+> view matrix models
+> #200.22,0.84892,0.27258,0.45282,-45.13,0.28772,0.48033,-0.82855,259.28,-0.44335,0.83366,0.32933,-96.184
+> view matrix models
+> #200.22,0.84892,0.27258,0.45282,-37.882,0.28772,0.48033,-0.82855,263.28,-0.44335,0.83366,0.32933,-95.778
+> view matrix models
+> #200.22,0.84892,0.27258,0.45282,-43.122,0.28772,0.48033,-0.82855,251.41,-0.44335,0.83366,0.32933,-102.94
+> view matrix models
+> #200.22,0.84892,0.27258,0.45282,-40.258,0.28772,0.48033,-0.82855,255.53,-0.44335,0.83366,0.32933,-104.27
+> view matrix models
+> #200.22,0.84892,0.27258,0.45282,-37.327,0.28772,0.48033,-0.82855,257.21,-0.44335,0.83366,0.32933,-105.33
+> view matrix models
+> #200.22,0.84892,0.27258,0.45282,-36.82,0.28772,0.48033,-0.82855,257.92,-0.44335,0.83366,0.32933,-106.04
+> view matrix models
+> #200.22,0.84892,0.27258,0.45282,-37.159,0.28772,0.48033,-0.82855,249.43,-0.44335,0.83366,0.32933,-107.8
+> view matrix models
+> #200.22,0.84892,0.27258,0.45282,-36.908,0.28772,0.48033,-0.82855,250.22,-0.44335,0.83366,0.32933,-107.25
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #200.22,-0.5953,-0.35865,-0.71902,564.56,0.20278,-0.93295,0.29747,262.03,-0.77749,0.031287,0.62811,20.662
+> view matrix models
+> #200.22,-0.98996,-0.1248,-0.066332,413.76,0.1217,-0.99137,0.048805,344.68,-0.07185,0.040243,0.9966,-165.58
+> ui mousemode right "translate selected models"
+> view matrix models
+> #200.22,-0.98996,-0.1248,-0.066332,416.01,0.1217,-0.99137,0.048805,341.79,-0.07185,0.040243,0.9966,-167.94
+> view matrix models
+> #200.22,-0.98996,-0.1248,-0.066332,416.68,0.1217,-0.99137,0.048805,345.3,-0.07185,0.040243,0.9966,-167.48
+> view matrix models
+> #200.22,-0.98996,-0.1248,-0.066332,418.39,0.1217,-0.99137,0.048805,344.05,-0.07185,0.040243,0.9966,-167.41
+> view matrix models
+> #200.22,-0.98996,-0.1248,-0.066332,418.43,0.1217,-0.99137,0.048805,344.19,-0.07185,0.040243,0.9966,-167.14
+> ui mousemode right select
+> select clear
+> select #15
+models selected
+> select clear
+> select #200.25
+models selected
+> select #200.23
+models selected
+> select add #200.23
+models selected
+> select add #200.24
+models selected
+> ui mousemode right "translate selected models"
+> view matrix models
+> #200.23,1,0,0,95.172,0,1,0,43.41,0,0,1,-64.678,#200.24,1,0,0,91.172,0,1,0,43.236,0,0,1,-116.29
+> view matrix models
+> #200.23,1,0,0,94.712,0,1,0,43.109,0,0,1,-62.535,#200.24,1,0,0,90.712,0,1,0,42.935,0,0,1,-114.14
+> view matrix models
+> #200.23,1,0,0,96.522,0,1,0,39.16,0,0,1,-62.546,#200.24,1,0,0,92.522,0,1,0,38.986,0,0,1,-114.15
+> view matrix models
+> #200.23,1,0,0,94.576,0,1,0,41.127,0,0,1,-61.436,#200.24,1,0,0,90.576,0,1,0,40.953,0,0,1,-113.04
+> fitmap #200.23 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.9274, correlation about mean = 0.5342, overlap = 26.16
+steps = 140, shift = 2.56, angle = 102 degrees
+Position of S115_glycan.mrc (#200.23) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.10795494 -0.49285303 0.86338961 129.94114754
+.88291024 0.35165944 0.31113525 -30.26162117
+-0.45696305 0.79588412 0.39718162 -6.35689556
+Axis 0.24637869 0.67108306 0.69924608
+Axis point 87.04329248 64.34370510 0.00000000
+Rotation angle (degrees) 100.34395410
+Shift along axis 7.26163382
+> fitmap #200.24 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.9292, correlation about mean = 0.5642, overlap = 28.68
+steps = 88, shift = 3.23, angle = 92.1 degrees
+Position of S115_glycan.mrc (#200.24) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.12505883 -0.40853858 0.90413302 70.58907460
+.90355445 0.42331305 0.06629805 13.32235902
+-0.40981661 0.80864225 0.42207588 -75.78607641
+Axis 0.37121263 0.65704655 0.65611814
+Axis point -18.02941325 0.00000000 -101.58426716
+Rotation angle (degrees) 90.84664018
+Shift along axis -14.76765383
+> select subtract #200.24
+models selected
+> view matrix models
+> #200.23,-0.136,-0.49119,0.86037,149.91,0.8748,0.34807,0.337,-15.814,-0.465,0.79849,0.38235,-99.453
+> view matrix models
+> #200.23,-0.136,-0.49119,0.86037,125.02,0.8748,0.34807,0.337,-17.103,-0.465,0.79849,0.38235,-110.13
+> view matrix models
+> #200.23,-0.136,-0.49119,0.86037,133.23,0.8748,0.34807,0.337,-26.462,-0.465,0.79849,0.38235,-108.01
+> view matrix models
+> #200.23,-0.136,-0.49119,0.86037,133.33,0.8748,0.34807,0.337,-26.573,-0.465,0.79849,0.38235,-107.97
+> view matrix models
+> #200.23,-0.136,-0.49119,0.86037,128.95,0.8748,0.34807,0.337,-26.36,-0.465,0.79849,0.38235,-106.14
+> view matrix models
+> #200.23,-0.136,-0.49119,0.86037,129.28,0.8748,0.34807,0.337,-31.772,-0.465,0.79849,0.38235,-104.67
+> view matrix models
+> #200.23,-0.136,-0.49119,0.86037,126.93,0.8748,0.34807,0.337,-31.419,-0.465,0.79849,0.38235,-107.74
+> select subtract #200.23
+Nothing selected
+> select add #200.22
+models selected
+> select subtract #200.22
+Nothing selected
+> select add #200.23
+models selected
+> select subtract #200.23
+Nothing selected
+> select add #200.24
+models selected
+> select subtract #200.24
+Nothing selected
+> select add #200.25
+models selected
+> fitmap #200.25 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.8465, correlation about mean = 0.2456, overlap = 26.72
+steps = 76, shift = 2.78, angle = 65.8 degrees
+Position of S115_glycan.mrc (#200.25) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.65418083 -0.42170575 0.62786280 70.77060034
+-0.12436773 0.75885852 0.63927021 -132.44869850
+-0.74604297 -0.49628419 0.44398411 185.07755754
+Axis -0.62839451 0.76029369 0.16454129
+Axis point 192.70954227 0.00000000 108.24141912
+Rotation angle (degrees) 64.62685196
+Shift along axis -114.71886775
+> fitmap #200.25 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.8486, correlation about mean = 0.2544, overlap = 26.77
+steps = 28, shift = 0.0295, angle = 0.619 degrees
+Position of S115_glycan.mrc (#200.25) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.65071626 -0.41680367 0.63469918 68.65466735
+-0.13428352 0.75953483 0.63645485 -130.56660162
+-0.74735285 -0.49938116 0.43827180 187.24125637
+Axis -0.62715967 0.76310954 0.15599544
+Axis point 191.87808940 0.00000000 109.56153534
+Rotation angle (degrees) 64.89607586
+Shift along axis -113.48527495
+> view matrix models
+> #200.25,0.64416,-0.44218,0.62414,92.258,-0.1263,0.74329,0.65694,-106.85,-0.7544,-0.502,0.42295,168.43
+> select add #200.22
+models selected
+> select subtract #200.22
+models selected
+> fitmap #200.25 inMap #200.22
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 0.8723, correlation about mean = 0.6467, overlap = 30.07
+steps = 72, shift = 1.85, angle = 22 degrees
+Position of S115_glycan.mrc (#200.25) relative to S115_glycan.mrc (#200.22)
+coordinates:
+Matrix rotation and translation
+-0.53307789 0.32914847 -0.77941596 332.90893885
+.36388857 -0.74247019 -0.56242610 424.33791242
+-0.76381481 -0.58343748 0.27602108 391.89452441
+Axis -0.48308418 -0.35869468 0.79872887
+Axis point 282.07786553 302.43159120 0.00000000
+Rotation angle (degrees) 178.75388356
+Shift along axis -0.01332458
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #200.25,0.24448,-0.80629,0.53863,236.55,-0.91814,-0.013843,0.39602,211.52,-0.31185,-0.59135,-0.74367,410.4
+> view matrix models
+> #200.25,0.99451,0.021375,-0.10248,130.93,-0.091224,0.65717,-0.7482,248.16,0.051354,0.75344,0.65551,-239.13
+> view matrix models
+> #200.25,0.96503,0.15016,0.21485,32.828,-0.048319,0.90752,-0.41723,113.44,-0.25763,0.39226,0.88304,-182.81
+> view matrix models
+> #200.25,-0.97622,0.060972,-0.20803,414.14,-0.12586,-0.94074,0.3149,304.28,-0.1765,0.33359,0.92605,-192.81
+> fitmap #200.25 inMap #200.22
+Fit map S115_glycan.mrc in map S115_glycan.mrc using 53 points
+correlation = 1, correlation about mean = 0.9999, overlap = 45.91
+steps = 64, shift = 1.28, angle = 22 degrees
+Position of S115_glycan.mrc (#200.25) relative to S115_glycan.mrc (#200.22)
+coordinates:
+Matrix rotation and translation
+.99999943 -0.00088103 -0.00060539 0.31133312
+.00088151 0.99999931 0.00077748 -0.30583807
+.00060469 -0.00077800 0.99999951 0.06542859
+Axis -0.58832000 -0.45768206 0.66663836
+Axis point 347.00306979 353.43418033 0.00000000
+Rotation angle (degrees) 0.07574287
+Shift along axis 0.00043031
+> ui mousemode right "translate selected models"
+> view matrix models
+> #200.25,-0.99011,-0.12387,-0.06583,400.88,0.12086,-0.99151,0.047961,317.29,-0.071212,0.039531,0.99668,-143.42
+> fitmap #200.25 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.947, correlation about mean = 0.6686, overlap = 28.02
+steps = 68, shift = 2.5, angle = 8.9 degrees
+Position of S115_glycan.mrc (#200.25) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.95702436 -0.21281250 -0.19701573 448.41486126
+.22127746 -0.97496862 -0.02173642 316.05463250
+-0.18745839 -0.06439741 0.98015934 -104.25217750
+Axis -0.09778219 -0.02190613 0.99496672
+Axis point 201.73780007 180.91943403 0.00000000
+Rotation angle (degrees) 167.40001672
+Shift along axis -154.49796850
+> fitmap #200.25 inMap #6
+Fit map S115_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 53 points
+correlation = 0.9471, correlation about mean = 0.6688, overlap = 28.03
+steps = 36, shift = 0.0044, angle = 0.126 degrees
+Position of S115_glycan.mrc (#200.25) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.95680380 -0.21194456 -0.19901253 448.69784834
+.22053633 -0.97513546 -0.02178429 316.20012849
+-0.18944714 -0.06473277 0.97975479 -103.81735381
+Axis -0.09879722 -0.02200391 0.99486428
+Axis point 201.90233188 180.91201599 0.00000000
+Rotation angle (degrees) 167.44617180
+Shift along axis -154.57191808
+> select subtract #200.25
+Nothing selected
+> color #200.19 #ff1721ff models
+> color #200.20 #ff1721ff models
+> color #200.21 #ff1721ff models
+> color #200.22 #ff1721ff models
+> color #200.23 #ff1721ff models
+> color #200.24 #ff1721ff models
+> color #200.25 #ff1721ff models
+> vop add #200
+Opened volume sum as #16, grid size 116,109,261, pixel 1.07,1.07,1.07, shown
+at step 1, values float32
+> hide #!200 models
+> color #16 #ff1721ff models
+> vop add #14,15,16
+Opened volume sum as #21, grid size 128,151,281, pixel 1.07,1.07,1.07, shown
+at step 1, values float32
+> color #21 #ff1721ff models
+> show #!14 models
+> hide #!14 models
+> close #14-16
+> rename #21 S115_glycan_all
+> rename #21 #16
+No name or id option specified for renaming
+> rename #21 id #16
+> hide #!16 models
+> show #!17 models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #14, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #15, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> rename #14-15 id #201
+> rename #17 id #201
+> color #201 #ff4bf9ff models
+> color #201.1 #ff4bf9ff models
+> color #201.2 #ff4bf9ff models
+> rename #16 id #30
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #14, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #15, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #16, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #17, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> rename #14-17 id #201
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #14, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #15, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #16, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #17, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> rename #14-17 id #201
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #14, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #15, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #16, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #17, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> rename #14-17 id #201
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #14, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #15, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #16, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #17, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> rename #14-17 id #201
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #14, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #15, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #16, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #17, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> rename #14-17 id #201
+> color #5,201#6.1#!6 magenta
+> color #6 #fff6b6ff models
+> color #5 #fff6b6ff models
+> select add #5
+atoms, 169015 bonds, 22022 residues, 78 models selected
+> ui mousemode right select
+> select clear
+> select #5.1/0:115 #5.2/1:115 #5.3/2:115 #5.4/3:115 #5.5/4:115 #5.6/5:115
+> #5.7/6:115 #5.8/7:115 #5.9/8:115 #5.10/9:115 #5.11/AA:115 #5.12/AB:115
+> #5.13/AC:115 #5.14/AD:115 #5.15/AE:115 #5.16/AF:115 #5.17/AG:115
+> #5.18/AH:115 #5.19/AI:115 #5.20/AJ:115 #5.21/AK:115 #5.22/AL:115
+> #5.23/AM:115 #5.24/AN:115 #5.25/AO:115 #5.26/AP:115 #5.27/B:115 #5.28/C:115
+> #5.29/D:115 #5.30/E:115 #5.31/F:115 #5.32/G:115 #5.33/H:115 #5.34/I:115
+> #5.35/J:115 #5.36/K:115 #5.37/L:115 #5.38/M:115 #5.39/N:115 #5.40/O:115
+> #5.41/P:115 #5.42/Q:115 #5.43/R:115 #5.44/S:115 #5.45/T:115 #5.46/U:115
+> #5.47/V:115 #5.48/W:115 #5.49/X:115 #5.50/Y:115 #5.51/Z:115 #5.52/a:115
+> #5.53/b:115 #5.54/c:115 #5.55/d:115 #5.56/e:115 #5.57/f:115 #5.58/g:115
+> #5.59/h:115 #5.60/i:115 #5.61/j:115 #5.62/k:115 #5.63/l:115 #5.64/m:115
+> #5.65/n:115 #5.66/o:115 #5.67/p:115 #5.68/q:115 #5.69/r:115 #5.70/s:115
+> #5.71/t:115 #5.72/u:115 #5.73/v:115 #5.74/w:115 #5.75/x:115 #5.76/y:115
+> #5.77/z:115
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:115 #5.2/1:115 #5.3/2:115 #5.4/3:115 #5.5/4:115 #5.6/5:115
+> #5.7/6:115 #5.8/7:115 #5.9/8:115 #5.10/9:115 #5.11/AA:115 #5.12/AB:115
+> #5.13/AC:115 #5.14/AD:115 #5.15/AE:115 #5.16/AF:115 #5.17/AG:115
+> #5.18/AH:115 #5.19/AI:115 #5.20/AJ:115 #5.21/AK:115 #5.22/AL:115
+> #5.23/AM:115 #5.24/AN:115 #5.25/AO:115 #5.26/AP:115 #5.27/B:115 #5.28/C:115
+> #5.29/D:115 #5.30/E:115 #5.31/F:115 #5.32/G:115 #5.33/H:115 #5.34/I:115
+> #5.35/J:115 #5.36/K:115 #5.37/L:115 #5.38/M:115 #5.39/N:115 #5.40/O:115
+> #5.41/P:115 #5.42/Q:115 #5.43/R:115 #5.44/S:115 #5.45/T:115 #5.46/U:115
+> #5.47/V:115 #5.48/W:115 #5.49/X:115 #5.50/Y:115 #5.51/Z:115 #5.52/a:115
+> #5.53/b:115 #5.54/c:115 #5.55/d:115 #5.56/e:115 #5.57/f:115 #5.58/g:115
+> #5.59/h:115 #5.60/i:115 #5.61/j:115 #5.62/k:115 #5.63/l:115 #5.64/m:115
+> #5.65/n:115 #5.66/o:115 #5.67/p:115 #5.68/q:115 #5.69/r:115 #5.70/s:115
+> #5.71/t:115 #5.72/u:115 #5.73/v:115 #5.74/w:115 #5.75/x:115 #5.76/y:115
+> #5.77/z:115
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [115] RMSD: 167.880
+> color sel red
+> select add #5
+atoms, 169015 bonds, 22022 residues, 78 models selected
+> select clear
+> color #5 #feff46ff models
+> color #5 #fff6b6ff models
+> select #5.1/0:126 #5.2/1:126 #5.3/2:126 #5.4/3:126 #5.5/4:126 #5.6/5:126
+> #5.7/6:126 #5.8/7:126 #5.9/8:126 #5.10/9:126 #5.11/AA:126 #5.12/AB:126
+> #5.13/AC:126 #5.14/AD:126 #5.15/AE:126 #5.16/AF:126 #5.17/AG:126
+> #5.18/AH:126 #5.19/AI:126 #5.20/AJ:126 #5.21/AK:126 #5.22/AL:126
+> #5.23/AM:126 #5.24/AN:126 #5.25/AO:126 #5.26/AP:126 #5.27/B:126 #5.28/C:126
+> #5.29/D:126 #5.30/E:126 #5.31/F:126 #5.32/G:126 #5.33/H:126 #5.34/I:126
+> #5.35/J:126 #5.36/K:126 #5.37/L:126 #5.38/M:126 #5.39/N:126 #5.40/O:126
+> #5.41/P:126 #5.42/Q:126 #5.43/R:126 #5.44/S:126 #5.45/T:126 #5.46/U:126
+> #5.47/V:126 #5.48/W:126 #5.49/X:126 #5.50/Y:126 #5.51/Z:126 #5.52/a:126
+> #5.53/b:126 #5.54/c:126 #5.55/d:126 #5.56/e:126 #5.57/f:126 #5.58/g:126
+> #5.59/h:126 #5.60/i:126 #5.61/j:126 #5.62/k:126 #5.63/l:126 #5.64/m:126
+> #5.65/n:126 #5.66/o:126 #5.67/p:126 #5.68/q:126 #5.69/r:126 #5.70/s:126
+> #5.71/t:126 #5.72/u:126 #5.73/v:126 #5.74/w:126 #5.75/x:126 #5.76/y:126
+> #5.77/z:126
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:126 #5.2/1:126 #5.3/2:126 #5.4/3:126 #5.5/4:126 #5.6/5:126
+> #5.7/6:126 #5.8/7:126 #5.9/8:126 #5.10/9:126 #5.11/AA:126 #5.12/AB:126
+> #5.13/AC:126 #5.14/AD:126 #5.15/AE:126 #5.16/AF:126 #5.17/AG:126
+> #5.18/AH:126 #5.19/AI:126 #5.20/AJ:126 #5.21/AK:126 #5.22/AL:126
+> #5.23/AM:126 #5.24/AN:126 #5.25/AO:126 #5.26/AP:126 #5.27/B:126 #5.28/C:126
+> #5.29/D:126 #5.30/E:126 #5.31/F:126 #5.32/G:126 #5.33/H:126 #5.34/I:126
+> #5.35/J:126 #5.36/K:126 #5.37/L:126 #5.38/M:126 #5.39/N:126 #5.40/O:126
+> #5.41/P:126 #5.42/Q:126 #5.43/R:126 #5.44/S:126 #5.45/T:126 #5.46/U:126
+> #5.47/V:126 #5.48/W:126 #5.49/X:126 #5.50/Y:126 #5.51/Z:126 #5.52/a:126
+> #5.53/b:126 #5.54/c:126 #5.55/d:126 #5.56/e:126 #5.57/f:126 #5.58/g:126
+> #5.59/h:126 #5.60/i:126 #5.61/j:126 #5.62/k:126 #5.63/l:126 #5.64/m:126
+> #5.65/n:126 #5.66/o:126 #5.67/p:126 #5.68/q:126 #5.69/r:126 #5.70/s:126
+> #5.71/t:126 #5.72/u:126 #5.73/v:126 #5.74/w:126 #5.75/x:126 #5.76/y:126
+> #5.77/z:126
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [126] RMSD: 167.782
+> color sel magenta
+> select clear
+> ui tool show "Volume Viewer"
+> hide #!201 models
+> show #!201 models
+> volume #201.1 level 0.055
+> volume #201.2 level 0.055
+> volume #201.4 level 0.055
+> volume #201.5 level 0.055
+> volume #201.6 level 0.055
+> volume #201.7 level 0.055
+> volume #201.8 level 0.055
+> volume #201.10 level 0.055
+> volume #201.9 level 0.055
+> volume #201.11 level 0.055
+> volume #201.12 level 0.055
+> volume #201.13 level 0.055
+> volume #201.14 level 0.055
+> volume #201.15 level 0.055
+> volume #201.16 level 0.055
+> volume #201.17 level 0.055
+> volume #201.18 level 0.055
+> volume #201.19 level 0.055
+> volume #201.20 level 0.055
+> volume #201.21 level 0.055
+> volume #201.22 level 0.055
+> volume #201.23 level 0.055
+> select add #201
+models selected
+> select subtract #201
+Nothing selected
+> select add #201.1
+models selected
+> lighting soft
+> select add #201.2
+models selected
+> select add #201.3
+models selected
+> select add #201.4
+models selected
+> select add #201
+models selected
+> select subtract #201
+Nothing selected
+> select add #201.1
+models selected
+> select subtract #201.1
+Nothing selected
+> select add #201.2
+models selected
+> select subtract #201.2
+Nothing selected
+> select add #201.1
+models selected
+> select subtract #201.1
+Nothing selected
+> select add #201.2
+models selected
+> select subtract #201.2
+Nothing selected
+> select add #201.3
+models selected
+> select subtract #201.3
+Nothing selected
+> select add #201.4
+models selected
+> select subtract #201.4
+Nothing selected
+> select add #201.5
+models selected
+> select subtract #201.5
+Nothing selected
+> select add #201.6
+models selected
+> select subtract #201.6
+Nothing selected
+> select add #201.3
+models selected
+> select subtract #201.3
+Nothing selected
+> show #!200 models
+> hide #!200 models
+> show #!30 models
+> fitmap #30 inMap #6
+Fit map S115_glycan_all in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 7195 points
+correlation = 0.6668, correlation about mean = 0.3125, overlap = 897.7
+steps = 36, shift = 0.482, angle = 0.191 degrees
+Position of S115_glycan_all (#30) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.16094314 0.98676225 -0.01994051 37.08655389
+-0.98693782 -0.16105240 -0.00398950 410.72133150
+-0.00714815 0.01903796 0.99979323 15.64002597
+Axis 0.01166611 -0.00648083 -0.99991095
+Axis point 193.15774788 189.45816283 0.00000000
+Rotation angle (degrees) 99.27081666
+Shift along axis -17.86779347
+> combine #5
+> hide #14 models
+> hide #!5 models
+> show #!1 models
+> hide #!6 models
+> show #!6 models
+> fitmap #6 inMap #1
+Fit map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone in map
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc using 283482 points
+correlation = 1, correlation about mean = 0.9998, overlap = 2.083e+05
+steps = 40, shift = 0.0267, angle = 0.00516 degrees
+Position of J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) relative
+to J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc (#1) coordinates:
+Matrix rotation and translation
+.00000000 -0.00002712 0.00003893 0.00459755
+.00002711 1.00000000 0.00003085 -0.00062344
+-0.00003893 -0.00003085 1.00000000 0.01270342
+Axis -0.54513704 0.68793139 0.47914090
+Axis point 287.52412618 0.00000000 -162.22033886
+Rotation angle (degrees) 0.00324241
+Shift along axis 0.00315155
+> fitmap #6 inMap #1
+Fit map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone in map
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc using 283482 points
+correlation = 1, correlation about mean = 0.9997, overlap = 2.08e+05
+steps = 28, shift = 0.00468, angle = 0.00433 degrees
+Position of J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) relative
+to J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc (#1) coordinates:
+Matrix rotation and translation
+.00000000 -0.00002727 -0.00001230 0.01748868
+.00002727 1.00000000 -0.00002461 0.01333670
+.00001230 0.00002461 1.00000000 -0.00721220
+Axis 0.63531875 -0.31745958 0.70398118
+Axis point -509.97057324 599.35517468 0.00000000
+Rotation angle (degrees) 0.00221959
+Shift along axis 0.00179977
+> fitmap #30 inMap #6
+Fit map S115_glycan_all in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 7195 points
+correlation = 0.6668, correlation about mean = 0.3124, overlap = 897.7
+steps = 40, shift = 0.0465, angle = 0.0113 degrees
+Position of S115_glycan_all (#30) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.16091235 0.98676796 -0.01990619 37.07715527
+-0.98694255 -0.16102225 -0.00403684 410.74077518
+-0.00718876 0.01899669 0.99979372 15.64898456
+Axis 0.01166913 -0.00644284 -0.99991116
+Axis point 193.16716162 189.47166076 0.00000000
+Rotation angle (degrees) 99.26903367
+Shift along axis -17.86127359
+> hide #!1 models
+> fitmap #14 inMap #6
+Fit molecule combination (#14) to map
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) using 168014 atoms
+average map value = 0.2885, steps = 40
+shifted from previous position = 0.0333
+rotated from previous position = 0.00873 degrees
+atoms outside contour = 130082, contour level = 0.5
+Position of combination (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99729139 0.07276231 -0.01074831 -12.23459048
+-0.07284294 0.99731663 -0.00731042 15.10457146
+.01018754 0.00807355 0.99991551 101.61444560
+Axis 0.10401258 -0.14154940 -0.98445170
+Axis point 5.58769840 20.47945484 0.00000000
+Rotation angle (degrees) 4.24103539
+Shift along axis -103.44510812
+> show #14 models
+> fitmap #14 inMap #6
+Fit molecule combination (#14) to map
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) using 168014 atoms
+average map value = 0.2885, steps = 40
+shifted from previous position = 0.0193
+rotated from previous position = 0.00351 degrees
+atoms outside contour = 130079, contour level = 0.5
+Position of combination (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99729200 0.07276057 -0.01070324 -12.22558974
+-0.07284126 0.99731645 -0.00735201 15.09732391
+.01013958 0.00811174 0.99991569 101.60800062
+Axis 0.10455778 -0.14092817 -0.98448307
+Axis point 6.41722254 19.62321069 0.00000000
+Rotation angle (degrees) 4.24080050
+Shift along axis -103.43727546
+> fitmap #14 inMap #6
+Fit molecule combination (#14) to map
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) using 168014 atoms
+average map value = 0.2885, steps = 36
+shifted from previous position = 0.000947
+rotated from previous position = 0.000553 degrees
+atoms outside contour = 130069, contour level = 0.5
+Position of combination (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99729191 0.07276139 -0.01070675 -12.22456928
+-0.07284201 0.99731646 -0.00734305 15.09618199
+.01014372 0.00810306 0.99991572 101.60852553
+Axis 0.10443795 -0.14097919 -0.98448849
+Axis point 6.32320613 19.77566374 0.00000000
+Rotation angle (degrees) 4.24082277
+Shift along axis -103.43738011
+> show #!5 models
+> hide #!5 models
+> show #!5 models
+> mmaker #5 to #14
+Parameters
+---
+Chain pairing | bb
+Alignment algorithm | Needleman-Wunsch
+Similarity matrix | BLOSUM-62
+SS fraction | 0.3
+Gap open (HH/SS/other) | 18/18/6
+Gap extend | 1
+SS matrix |  |  | H | S | O
+---|---|---|---
+H | 6 | -9 | -6
+S |  | 6 | -6
+O |  |  | 4
+Iteration cutoff | 2
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb 0, chain 0 (#5.1), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb 1, chain 1 (#5.2), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb 2, chain 2 (#5.3), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.168 angstroms; (across all 286 pairs:
+.168)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb 3, chain 3 (#5.4), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.117 angstroms; (across all 286 pairs:
+.117)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb 4, chain 4 (#5.5), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.101 angstroms; (across all 286 pairs:
+.101)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb 5, chain 5 (#5.6), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.112 angstroms; (across all 286 pairs:
+.112)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb 6, chain 6 (#5.7), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.107 angstroms; (across all 286 pairs:
+.107)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb 7, chain 7 (#5.8), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.078 angstroms; (across all 286 pairs:
+.078)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb 8, chain 8 (#5.9), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.148 angstroms; (across all 286 pairs:
+.148)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb 9, chain 9 (#5.10), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.130 angstroms; (across all 286 pairs:
+.130)
+Matchmaker combination, chain AA (#14) with
+FlaB1_core_long_Asym_map_related.pdb AA, chain AA (#5.11), sequence alignment
+score = 1446.2
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AB, chain AB (#5.12), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.133 angstroms; (across all 286 pairs:
+.133)
+Matchmaker combination, chain AC (#14) with
+FlaB1_core_long_Asym_map_related.pdb AC, chain AC (#5.13), sequence alignment
+score = 1446.8
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AD, chain AD (#5.14), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.162 angstroms; (across all 286 pairs:
+.162)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AE, chain AE (#5.15), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.263 angstroms; (across all 286 pairs:
+.263)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AF, chain AF (#5.16), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.128 angstroms; (across all 286 pairs:
+.128)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AG, chain AG (#5.17), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.136 angstroms; (across all 286 pairs:
+.136)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AH, chain AH (#5.18), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.092 angstroms; (across all 286 pairs:
+.092)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AI, chain AI (#5.19), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.125 angstroms; (across all 286 pairs:
+.125)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AJ, chain AJ (#5.20), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.074 angstroms; (across all 286 pairs:
+.074)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AK, chain AK (#5.21), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.118 angstroms; (across all 286 pairs:
+.118)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AL, chain AL (#5.22), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.128 angstroms; (across all 286 pairs:
+.128)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AM, chain AM (#5.23), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.131 angstroms; (across all 286 pairs:
+.131)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AN, chain AN (#5.24), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AO, chain AO (#5.25), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.117 angstroms; (across all 286 pairs:
+.117)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AP, chain AP (#5.26), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.101 angstroms; (across all 286 pairs:
+.101)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb B, chain B (#5.27), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.112 angstroms; (across all 286 pairs:
+.112)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb C, chain C (#5.28), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.161 angstroms; (across all 286 pairs:
+.161)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb D, chain D (#5.29), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.107 angstroms; (across all 286 pairs:
+.107)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb E, chain E (#5.30), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.078 angstroms; (across all 286 pairs:
+.078)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb F, chain F (#5.31), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.188 angstroms; (across all 286 pairs:
+.188)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb G, chain G (#5.32), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.161 angstroms; (across all 286 pairs:
+.161)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb H, chain H (#5.33), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.107 angstroms; (across all 286 pairs:
+.107)
+Matchmaker combination, chain I (#14) with
+FlaB1_core_long_Asym_map_related.pdb I, chain I (#5.34), sequence alignment
+score = 1446.8
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb J, chain J (#5.35), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb K, chain K (#5.36), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.225 angstroms; (across all 286 pairs:
+.225)
+Matchmaker combination, chain AA (#14) with
+FlaB1_core_long_Asym_map_related.pdb L, chain L (#5.37), sequence alignment
+score = 1446.2
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb M, chain M (#5.38), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.078 angstroms; (across all 286 pairs:
+.078)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb N, chain N (#5.39), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.172 angstroms; (across all 286 pairs:
+.172)
+Matchmaker combination, chain AC (#14) with
+FlaB1_core_long_Asym_map_related.pdb O, chain O (#5.40), sequence alignment
+score = 1446.8
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb P, chain P (#5.41), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.188 angstroms; (across all 286 pairs:
+.188)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb Q, chain Q (#5.42), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.148 angstroms; (across all 286 pairs:
+.148)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb R, chain R (#5.43), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.157 angstroms; (across all 286 pairs:
+.157)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb S, chain S (#5.44), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.128 angstroms; (across all 286 pairs:
+.128)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb T, chain T (#5.45), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.116 angstroms; (across all 286 pairs:
+.116)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb U, chain U (#5.46), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.136 angstroms; (across all 286 pairs:
+.136)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb V, chain V (#5.47), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.130 angstroms; (across all 286 pairs:
+.130)
+Matchmaker combination, chain I (#14) with
+FlaB1_core_long_Asym_map_related.pdb W, chain W (#5.48), sequence alignment
+score = 1446.8
+RMSD between 286 pruned atom pairs is 0.001 angstroms; (across all 286 pairs:
+.001)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb X, chain X (#5.49), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.133 angstroms; (across all 286 pairs:
+.133)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb Y, chain Y (#5.50), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.074 angstroms; (across all 286 pairs:
+.074)
+Matchmaker combination, chain Z (#14) with
+FlaB1_core_long_Asym_map_related.pdb Z, chain Z (#5.51), sequence alignment
+score = 1445
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb a, chain a (#5.52), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.118 angstroms; (across all 286 pairs:
+.118)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb b, chain b (#5.53), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb c, chain c (#5.54), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.225 angstroms; (across all 286 pairs:
+.225)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb d, chain d (#5.55), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.111 angstroms; (across all 286 pairs:
+.111)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb e, chain e (#5.56), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb f, chain f (#5.57), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.168 angstroms; (across all 286 pairs:
+.168)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb g, chain g (#5.58), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.117 angstroms; (across all 286 pairs:
+.117)
+Matchmaker combination, chain AA (#14) with
+FlaB1_core_long_Asym_map_related.pdb h, chain h (#5.59), sequence alignment
+score = 1446.2
+RMSD between 286 pruned atom pairs is 0.001 angstroms; (across all 286 pairs:
+.001)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb i, chain i (#5.60), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.133 angstroms; (across all 286 pairs:
+.133)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb j, chain j (#5.61), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.172 angstroms; (across all 286 pairs:
+.172)
+Matchmaker combination, chain AC (#14) with
+FlaB1_core_long_Asym_map_related.pdb k, chain k (#5.62), sequence alignment
+score = 1446.8
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb l, chain l (#5.63), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.162 angstroms; (across all 286 pairs:
+.162)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb m, chain m (#5.64), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.263 angstroms; (across all 286 pairs:
+.263)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb n, chain n (#5.65), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.157 angstroms; (across all 286 pairs:
+.157)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb o, chain o (#5.66), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.128 angstroms; (across all 286 pairs:
+.128)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb p, chain p (#5.67), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.116 angstroms; (across all 286 pairs:
+.116)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb q, chain q (#5.68), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.136 angstroms; (across all 286 pairs:
+.136)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb r, chain r (#5.69), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.092 angstroms; (across all 286 pairs:
+.092)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb s, chain s (#5.70), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.125 angstroms; (across all 286 pairs:
+.125)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb t, chain t (#5.71), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.133 angstroms; (across all 286 pairs:
+.133)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb u, chain u (#5.72), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.074 angstroms; (across all 286 pairs:
+.074)
+Matchmaker combination, chain Z (#14) with
+FlaB1_core_long_Asym_map_related.pdb v, chain v (#5.73), sequence alignment
+score = 1445
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb w, chain w (#5.74), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.118 angstroms; (across all 286 pairs:
+.118)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb x, chain x (#5.75), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.128 angstroms; (across all 286 pairs:
+.128)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb y, chain y (#5.76), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.131 angstroms; (across all 286 pairs:
+.131)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb z, chain z (#5.77), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.111 angstroms; (across all 286 pairs:
+.111)
+> mmaker #5 to #14
+Parameters
+---
+Chain pairing | bb
+Alignment algorithm | Needleman-Wunsch
+Similarity matrix | BLOSUM-62
+SS fraction | 0.3
+Gap open (HH/SS/other) | 18/18/6
+Gap extend | 1
+SS matrix |  |  | H | S | O
+---|---|---|---
+H | 6 | -9 | -6
+S |  | 6 | -6
+O |  |  | 4
+Iteration cutoff | 2
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb 0, chain 0 (#5.1), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb 1, chain 1 (#5.2), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb 2, chain 2 (#5.3), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.168 angstroms; (across all 286 pairs:
+.168)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb 3, chain 3 (#5.4), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.117 angstroms; (across all 286 pairs:
+.117)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb 4, chain 4 (#5.5), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.101 angstroms; (across all 286 pairs:
+.101)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb 5, chain 5 (#5.6), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.112 angstroms; (across all 286 pairs:
+.112)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb 6, chain 6 (#5.7), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.107 angstroms; (across all 286 pairs:
+.107)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb 7, chain 7 (#5.8), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.078 angstroms; (across all 286 pairs:
+.078)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb 8, chain 8 (#5.9), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.148 angstroms; (across all 286 pairs:
+.148)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb 9, chain 9 (#5.10), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.130 angstroms; (across all 286 pairs:
+.130)
+Matchmaker combination, chain AA (#14) with
+FlaB1_core_long_Asym_map_related.pdb AA, chain AA (#5.11), sequence alignment
+score = 1446.2
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AB, chain AB (#5.12), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.133 angstroms; (across all 286 pairs:
+.133)
+Matchmaker combination, chain AC (#14) with
+FlaB1_core_long_Asym_map_related.pdb AC, chain AC (#5.13), sequence alignment
+score = 1446.8
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AD, chain AD (#5.14), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.162 angstroms; (across all 286 pairs:
+.162)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AE, chain AE (#5.15), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.263 angstroms; (across all 286 pairs:
+.263)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AF, chain AF (#5.16), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.128 angstroms; (across all 286 pairs:
+.128)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AG, chain AG (#5.17), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.136 angstroms; (across all 286 pairs:
+.136)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AH, chain AH (#5.18), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.092 angstroms; (across all 286 pairs:
+.092)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AI, chain AI (#5.19), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.125 angstroms; (across all 286 pairs:
+.125)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AJ, chain AJ (#5.20), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.074 angstroms; (across all 286 pairs:
+.074)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AK, chain AK (#5.21), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.118 angstroms; (across all 286 pairs:
+.118)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AL, chain AL (#5.22), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.128 angstroms; (across all 286 pairs:
+.128)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AM, chain AM (#5.23), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.131 angstroms; (across all 286 pairs:
+.131)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AN, chain AN (#5.24), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AO, chain AO (#5.25), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.117 angstroms; (across all 286 pairs:
+.117)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb AP, chain AP (#5.26), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.101 angstroms; (across all 286 pairs:
+.101)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb B, chain B (#5.27), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.112 angstroms; (across all 286 pairs:
+.112)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb C, chain C (#5.28), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.161 angstroms; (across all 286 pairs:
+.161)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb D, chain D (#5.29), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.107 angstroms; (across all 286 pairs:
+.107)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb E, chain E (#5.30), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.078 angstroms; (across all 286 pairs:
+.078)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb F, chain F (#5.31), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.188 angstroms; (across all 286 pairs:
+.188)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb G, chain G (#5.32), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.161 angstroms; (across all 286 pairs:
+.161)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb H, chain H (#5.33), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.107 angstroms; (across all 286 pairs:
+.107)
+Matchmaker combination, chain I (#14) with
+FlaB1_core_long_Asym_map_related.pdb I, chain I (#5.34), sequence alignment
+score = 1446.8
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb J, chain J (#5.35), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb K, chain K (#5.36), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.225 angstroms; (across all 286 pairs:
+.225)
+Matchmaker combination, chain AA (#14) with
+FlaB1_core_long_Asym_map_related.pdb L, chain L (#5.37), sequence alignment
+score = 1446.2
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb M, chain M (#5.38), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.078 angstroms; (across all 286 pairs:
+.078)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb N, chain N (#5.39), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.172 angstroms; (across all 286 pairs:
+.172)
+Matchmaker combination, chain AC (#14) with
+FlaB1_core_long_Asym_map_related.pdb O, chain O (#5.40), sequence alignment
+score = 1446.8
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb P, chain P (#5.41), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.188 angstroms; (across all 286 pairs:
+.188)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb Q, chain Q (#5.42), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.148 angstroms; (across all 286 pairs:
+.148)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb R, chain R (#5.43), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.157 angstroms; (across all 286 pairs:
+.157)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb S, chain S (#5.44), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.128 angstroms; (across all 286 pairs:
+.128)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb T, chain T (#5.45), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.116 angstroms; (across all 286 pairs:
+.116)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb U, chain U (#5.46), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.136 angstroms; (across all 286 pairs:
+.136)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb V, chain V (#5.47), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.130 angstroms; (across all 286 pairs:
+.130)
+Matchmaker combination, chain I (#14) with
+FlaB1_core_long_Asym_map_related.pdb W, chain W (#5.48), sequence alignment
+score = 1446.8
+RMSD between 286 pruned atom pairs is 0.001 angstroms; (across all 286 pairs:
+.001)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb X, chain X (#5.49), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.133 angstroms; (across all 286 pairs:
+.133)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb Y, chain Y (#5.50), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.074 angstroms; (across all 286 pairs:
+.074)
+Matchmaker combination, chain Z (#14) with
+FlaB1_core_long_Asym_map_related.pdb Z, chain Z (#5.51), sequence alignment
+score = 1445
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb a, chain a (#5.52), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.118 angstroms; (across all 286 pairs:
+.118)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb b, chain b (#5.53), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb c, chain c (#5.54), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.225 angstroms; (across all 286 pairs:
+.225)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb d, chain d (#5.55), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.111 angstroms; (across all 286 pairs:
+.111)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb e, chain e (#5.56), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb f, chain f (#5.57), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.168 angstroms; (across all 286 pairs:
+.168)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb g, chain g (#5.58), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.117 angstroms; (across all 286 pairs:
+.117)
+Matchmaker combination, chain AA (#14) with
+FlaB1_core_long_Asym_map_related.pdb h, chain h (#5.59), sequence alignment
+score = 1446.2
+RMSD between 286 pruned atom pairs is 0.001 angstroms; (across all 286 pairs:
+.001)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb i, chain i (#5.60), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.133 angstroms; (across all 286 pairs:
+.133)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb j, chain j (#5.61), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.172 angstroms; (across all 286 pairs:
+.172)
+Matchmaker combination, chain AC (#14) with
+FlaB1_core_long_Asym_map_related.pdb k, chain k (#5.62), sequence alignment
+score = 1446.8
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb l, chain l (#5.63), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.162 angstroms; (across all 286 pairs:
+.162)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb m, chain m (#5.64), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.263 angstroms; (across all 286 pairs:
+.263)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb n, chain n (#5.65), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.157 angstroms; (across all 286 pairs:
+.157)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb o, chain o (#5.66), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.128 angstroms; (across all 286 pairs:
+.128)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb p, chain p (#5.67), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.116 angstroms; (across all 286 pairs:
+.116)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb q, chain q (#5.68), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.136 angstroms; (across all 286 pairs:
+.136)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb r, chain r (#5.69), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.092 angstroms; (across all 286 pairs:
+.092)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb s, chain s (#5.70), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.125 angstroms; (across all 286 pairs:
+.125)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb t, chain t (#5.71), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.133 angstroms; (across all 286 pairs:
+.133)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb u, chain u (#5.72), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.074 angstroms; (across all 286 pairs:
+.074)
+Matchmaker combination, chain Z (#14) with
+FlaB1_core_long_Asym_map_related.pdb v, chain v (#5.73), sequence alignment
+score = 1445
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb w, chain w (#5.74), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.118 angstroms; (across all 286 pairs:
+.118)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb x, chain x (#5.75), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.128 angstroms; (across all 286 pairs:
+.128)
+Matchmaker combination, chain 1 (#14) with
+FlaB1_core_long_Asym_map_related.pdb y, chain y (#5.76), sequence alignment
+score = 1443.8
+RMSD between 286 pruned atom pairs is 0.131 angstroms; (across all 286 pairs:
+.131)
+Matchmaker combination, chain 0 (#14) with
+FlaB1_core_long_Asym_map_related.pdb z, chain z (#5.77), sequence alignment
+score = 1445.6
+RMSD between 286 pruned atom pairs is 0.111 angstroms; (across all 286 pairs:
+.111)
+> close #14
+> color #201 #ff97f2ff models
+> color #201 #ff4bf9ff models
+> color #201 #ff97f2ff models
+> color #201.1 #ff97f2ff models
+> color #201.2 #ff97f2ff models
+> color #201.3 #ff97f2ff models
+> select add #201
+models selected
+> select subtract #201
+Nothing selected
+> hide #!30 models
+> select #5.1/0:126 #5.2/1:126 #5.3/2:126 #5.4/3:126 #5.5/4:126 #5.6/5:126
+> #5.7/6:126 #5.8/7:126 #5.9/8:126 #5.10/9:126 #5.11/AA:126 #5.12/AB:126
+> #5.13/AC:126 #5.14/AD:126 #5.15/AE:126 #5.16/AF:126 #5.17/AG:126
+> #5.18/AH:126 #5.19/AI:126 #5.20/AJ:126 #5.21/AK:126 #5.22/AL:126
+> #5.23/AM:126 #5.24/AN:126 #5.25/AO:126 #5.26/AP:126 #5.27/B:126 #5.28/C:126
+> #5.29/D:126 #5.30/E:126 #5.31/F:126 #5.32/G:126 #5.33/H:126 #5.34/I:126
+> #5.35/J:126 #5.36/K:126 #5.37/L:126 #5.38/M:126 #5.39/N:126 #5.40/O:126
+> #5.41/P:126 #5.42/Q:126 #5.43/R:126 #5.44/S:126 #5.45/T:126 #5.46/U:126
+> #5.47/V:126 #5.48/W:126 #5.49/X:126 #5.50/Y:126 #5.51/Z:126 #5.52/a:126
+> #5.53/b:126 #5.54/c:126 #5.55/d:126 #5.56/e:126 #5.57/f:126 #5.58/g:126
+> #5.59/h:126 #5.60/i:126 #5.61/j:126 #5.62/k:126 #5.63/l:126 #5.64/m:126
+> #5.65/n:126 #5.66/o:126 #5.67/p:126 #5.68/q:126 #5.69/r:126 #5.70/s:126
+> #5.71/t:126 #5.72/u:126 #5.73/v:126 #5.74/w:126 #5.75/x:126 #5.76/y:126
+> #5.77/z:126
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:126 #5.2/1:126 #5.3/2:126 #5.4/3:126 #5.5/4:126 #5.6/5:126
+> #5.7/6:126 #5.8/7:126 #5.9/8:126 #5.10/9:126 #5.11/AA:126 #5.12/AB:126
+> #5.13/AC:126 #5.14/AD:126 #5.15/AE:126 #5.16/AF:126 #5.17/AG:126
+> #5.18/AH:126 #5.19/AI:126 #5.20/AJ:126 #5.21/AK:126 #5.22/AL:126
+> #5.23/AM:126 #5.24/AN:126 #5.25/AO:126 #5.26/AP:126 #5.27/B:126 #5.28/C:126
+> #5.29/D:126 #5.30/E:126 #5.31/F:126 #5.32/G:126 #5.33/H:126 #5.34/I:126
+> #5.35/J:126 #5.36/K:126 #5.37/L:126 #5.38/M:126 #5.39/N:126 #5.40/O:126
+> #5.41/P:126 #5.42/Q:126 #5.43/R:126 #5.44/S:126 #5.45/T:126 #5.46/U:126
+> #5.47/V:126 #5.48/W:126 #5.49/X:126 #5.50/Y:126 #5.51/Z:126 #5.52/a:126
+> #5.53/b:126 #5.54/c:126 #5.55/d:126 #5.56/e:126 #5.57/f:126 #5.58/g:126
+> #5.59/h:126 #5.60/i:126 #5.61/j:126 #5.62/k:126 #5.63/l:126 #5.64/m:126
+> #5.65/n:126 #5.66/o:126 #5.67/p:126 #5.68/q:126 #5.69/r:126 #5.70/s:126
+> #5.71/t:126 #5.72/u:126 #5.73/v:126 #5.74/w:126 #5.75/x:126 #5.76/y:126
+> #5.77/z:126
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [126] RMSD: 112.028
+> select add #201
+atoms, 385 bonds, 77 residues, 124 models selected
+> color #201 #ff4bf9ff models
+> select subtract #201
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:126 #5.2/1:126 #5.3/2:126 #5.4/3:126 #5.5/4:126 #5.6/5:126
+> #5.7/6:126 #5.8/7:126 #5.9/8:126 #5.10/9:126 #5.11/AA:126 #5.12/AB:126
+> #5.13/AC:126 #5.14/AD:126 #5.15/AE:126 #5.16/AF:126 #5.17/AG:126
+> #5.18/AH:126 #5.19/AI:126 #5.20/AJ:126 #5.21/AK:126 #5.22/AL:126
+> #5.23/AM:126 #5.24/AN:126 #5.25/AO:126 #5.26/AP:126 #5.27/B:126 #5.28/C:126
+> #5.29/D:126 #5.30/E:126 #5.31/F:126 #5.32/G:126 #5.33/H:126 #5.34/I:126
+> #5.35/J:126 #5.36/K:126 #5.37/L:126 #5.38/M:126 #5.39/N:126 #5.40/O:126
+> #5.41/P:126 #5.42/Q:126 #5.43/R:126 #5.44/S:126 #5.45/T:126 #5.46/U:126
+> #5.47/V:126 #5.48/W:126 #5.49/X:126 #5.50/Y:126 #5.51/Z:126 #5.52/a:126
+> #5.53/b:126 #5.54/c:126 #5.55/d:126 #5.56/e:126 #5.57/f:126 #5.58/g:126
+> #5.59/h:126 #5.60/i:126 #5.61/j:126 #5.62/k:126 #5.63/l:126 #5.64/m:126
+> #5.65/n:126 #5.66/o:126 #5.67/p:126 #5.68/q:126 #5.69/r:126 #5.70/s:126
+> #5.71/t:126 #5.72/u:126 #5.73/v:126 #5.74/w:126 #5.75/x:126 #5.76/y:126
+> #5.77/z:126
+atoms, 385 bonds, 77 residues, 77 models selected
+> select #5.1/0:126 #5.2/1:126 #5.3/2:126 #5.4/3:126 #5.5/4:126 #5.6/5:126
+> #5.7/6:126 #5.8/7:126 #5.9/8:126 #5.10/9:126 #5.11/AA:126 #5.12/AB:126
+> #5.13/AC:126 #5.14/AD:126 #5.15/AE:126 #5.16/AF:126 #5.17/AG:126
+> #5.18/AH:126 #5.19/AI:126 #5.20/AJ:126 #5.21/AK:126 #5.22/AL:126
+> #5.23/AM:126 #5.24/AN:126 #5.25/AO:126 #5.26/AP:126 #5.27/B:126 #5.28/C:126
+> #5.29/D:126 #5.30/E:126 #5.31/F:126 #5.32/G:126 #5.33/H:126 #5.34/I:126
+> #5.35/J:126 #5.36/K:126 #5.37/L:126 #5.38/M:126 #5.39/N:126 #5.40/O:126
+> #5.41/P:126 #5.42/Q:126 #5.43/R:126 #5.44/S:126 #5.45/T:126 #5.46/U:126
+> #5.47/V:126 #5.48/W:126 #5.49/X:126 #5.50/Y:126 #5.51/Z:126 #5.52/a:126
+> #5.53/b:126 #5.54/c:126 #5.55/d:126 #5.56/e:126 #5.57/f:126 #5.58/g:126
+> #5.59/h:126 #5.60/i:126 #5.61/j:126 #5.62/k:126 #5.63/l:126 #5.64/m:126
+> #5.65/n:126 #5.66/o:126 #5.67/p:126 #5.68/q:126 #5.69/r:126 #5.70/s:126
+> #5.71/t:126 #5.72/u:126 #5.73/v:126 #5.74/w:126 #5.75/x:126 #5.76/y:126
+> #5.77/z:126
+atoms, 385 bonds, 77 residues, 77 models selected
+[ID: 1] region 77 chains [126] RMSD: 112.028
+> hide #!5 models
+> show #!5 models
+> hide #!5 models
+> show #!5 models
+> hide #!5 models
+> show #!5 models
+> hide #!5 models
+> select add #5
+atoms, 169015 bonds, 22022 residues, 78 models selected
+> select subtract #5
+Nothing selected
+> show #!59 models
+> select add #59
+atoms, 88077 bonds, 10824 residues, 34 models selected
+> hide #!59 models
+> select subtract #59
+models selected
+> show #13 models
+> hide #13 models
+> show #13 models
+> hide #13 models
+> hide #!6 models
+> show #!5 models
+> hide #!5 models
+> hide #5.77 models
+> show #5.77 models
+> hide #5.76 models
+> hide #5.75 models
+> show #5.75 models
+> show #5.76 models
+> select add #5.76
+atoms, 2195 bonds, 286 residues, 1 model selected
+> select add #5.75
+atoms, 4390 bonds, 572 residues, 2 models selected
+> select add #5.74
+atoms, 6585 bonds, 858 residues, 3 models selected
+> select add #5.73
+atoms, 8780 bonds, 1144 residues, 4 models selected
+> select add #5.72
+atoms, 10975 bonds, 1430 residues, 5 models selected
+> select subtract #5.72
+atoms, 8780 bonds, 1144 residues, 4 models selected
+> select add #5.71
+atoms, 10975 bonds, 1430 residues, 5 models selected
+> hide #!5 models
+> select add #5
+atoms, 169015 bonds, 22022 residues, 78 models selected
+> select subtract #5
+Nothing selected
+> show #!5 models
+> hide #!5 models
+> show #3 models
+> hide #3 models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/T.Denticola_WT/FlaB1_core_monox33_real_refine.pdb
+Chain information for FlaB1_core_monox33_real_refine.pdb #14
+---
+Chain | Description
+B C D E F G H I J K L M N O P Q R S T U V W X Y Z a b c d e f g h | No description available
+> show #14 atoms
+> hide #14 atoms
+> show #14 cartoons
+> show #!2 models
+> hide #!2 models
+> show #!5 models
+> hide #!5 models
+> close #5
+> show #!6 models
+> select add #14
+atoms, 72435 bonds, 9438 residues, 1 model selected
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14,-0.39273,0.82702,-0.40226,191,0.87408,0.47165,0.11632,-90.146,0.28592,-0.30593,-0.90811,395.42
+> view matrix models
+> #14,-0.38432,0.84581,-0.37002,179.17,0.86627,0.46895,0.17221,-99.604,0.31918,-0.25435,-0.91293,380.16
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14,-0.38432,0.84581,-0.37002,187.02,0.86627,0.46895,0.17221,-103.09,0.31918,-0.25435,-0.91293,405.35
+> view matrix models
+> #14,-0.38432,0.84581,-0.37002,171.86,0.86627,0.46895,0.17221,-95.069,0.31918,-0.25435,-0.91293,413.19
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14,-0.40868,0.90871,-0.08502,105.98,0.91142,0.41123,0.014228,-60.239,0.047892,-0.071674,-0.99628,447.28
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14,-0.40868,0.90871,-0.08502,113.27,0.91142,0.41123,0.014228,-64.44,0.047892,-0.071674,-0.99628,446.58
+> view matrix models
+> #14,-0.40868,0.90871,-0.08502,117.31,0.91142,0.41123,0.014228,-71.11,0.047892,-0.071674,-0.99628,490.52
+> view matrix models
+> #14,-0.40868,0.90871,-0.08502,111.23,0.91142,0.41123,0.014228,-61.526,0.047892,-0.071674,-0.99628,439.47
+> view matrix models
+> #14,-0.40868,0.90871,-0.08502,109.97,0.91142,0.41123,0.014228,-61.652,0.047892,-0.071674,-0.99628,478.28
+> view matrix models
+> #14,-0.40868,0.90871,-0.08502,106.57,0.91142,0.41123,0.014228,-55,0.047892,-0.071674,-0.99628,479.55
+> view matrix models
+> #14,-0.40868,0.90871,-0.08502,104.97,0.91142,0.41123,0.014228,-36.888,0.047892,-0.071674,-0.99628,495.42
+> view matrix models
+> #14,-0.40868,0.90871,-0.08502,105.69,0.91142,0.41123,0.014228,-39.841,0.047892,-0.071674,-0.99628,492.62
+> view matrix models
+> #14,-0.40868,0.90871,-0.08502,108.49,0.91142,0.41123,0.014228,-57.914,0.047892,-0.071674,-0.99628,493.01
+> view matrix models
+> #14,-0.40868,0.90871,-0.08502,109.01,0.91142,0.41123,0.014228,-62.822,0.047892,-0.071674,-0.99628,493.16
+> view matrix models
+> #14,-0.40868,0.90871,-0.08502,112.19,0.91142,0.41123,0.014228,-63.866,0.047892,-0.071674,-0.99628,492.19
+> view matrix models
+> #14,-0.40868,0.90871,-0.08502,117.05,0.91142,0.41123,0.014228,-62.857,0.047892,-0.071674,-0.99628,492.12
+> view matrix models
+> #14,-0.40868,0.90871,-0.08502,112.7,0.91142,0.41123,0.014228,-64.876,0.047892,-0.071674,-0.99628,489.51
+> fitmap #14 inMap #6
+Fit molecule FlaB1_core_monox33_real_refine.pdb (#14) to map
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) using 72006 atoms
+average map value = 0.3109, steps = 112
+shifted from previous position = 4.22
+rotated from previous position = 6 degrees
+atoms outside contour = 53473, contour level = 0.5
+Position of FlaB1_core_monox33_real_refine.pdb (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.37210813 0.92767159 0.03099979 76.72713234
+.92818801 0.37184225 0.01415517 -61.67155663
+.00160432 0.03404089 -0.99941916 475.78705384
+Axis 0.56026053 0.82818865 0.01454982
+Axis point 61.77277542 0.00000000 238.02068841
+Rotation angle (degrees) 178.98312709
+Shift along axis -1.16588342
+> select subtract #14
+Nothing selected
+> select add #14
+atoms, 72435 bonds, 9438 residues, 1 model selected
+> view matrix models
+> #14,-0.39528,0.91839,0.017738,86.624,0.91855,0.39528,0.0039463,-64.537,-0.0033871,0.017853,-0.99983,505.6
+> view matrix models
+> #14,-0.39528,0.91839,0.017738,88.889,0.91855,0.39528,0.0039463,-63.085,-0.0033871,0.017853,-0.99983,510.21
+> view matrix models
+> #14,-0.39528,0.91839,0.017738,88.673,0.91855,0.39528,0.0039463,-66.55,-0.0033871,0.017853,-0.99983,488.94
+> view matrix models
+> #14,-0.39528,0.91839,0.017738,90.03,0.91855,0.39528,0.0039463,-60.961,-0.0033871,0.017853,-0.99983,479.42
+> fitmap #14 inMap #6
+Fit molecule FlaB1_core_monox33_real_refine.pdb (#14) to map
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) using 72006 atoms
+average map value = 0.3109, steps = 80
+shifted from previous position = 3.94
+rotated from previous position = 0.0046 degrees
+atoms outside contour = 53470, contour level = 0.5
+Position of FlaB1_core_monox33_real_refine.pdb (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.37207482 0.92768600 0.03096821 76.72990973
+.92820144 0.37181121 0.01408980 -61.65800834
+.00155658 0.03398719 -0.99942106 475.80843833
+Axis 0.56027534 0.82817926 0.01451404
+Axis point 61.77194214 -0.00000000 238.02967706
+Rotation angle (degrees) 178.98255688
+Shift along axis -1.16810464
+> view matrix models
+> #14,-0.39525,0.9184,0.017708,84.552,0.91857,0.39525,0.0038801,-60.473,-0.0034355,0.0178,-0.99984,528.9
+> fitmap #14 inMap #6
+Fit molecule FlaB1_core_monox33_real_refine.pdb (#14) to map
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) using 72006 atoms
+average map value = 0.241, steps = 160
+shifted from previous position = 2.89
+rotated from previous position = 1.63 degrees
+atoms outside contour = 61423, contour level = 0.5
+Position of FlaB1_core_monox33_real_refine.pdb (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.34852859 0.93641351 0.04071336 66.59908496
+.93727477 0.34788404 0.02219749 -61.66018663
+.00662250 0.04589606 -0.99892428 524.79675529
+Axis 0.57066889 0.82091833 0.02073927
+Axis point 58.05042824 0.00000000 262.74984192
+Rotation angle (degrees) 178.81023322
+Shift along axis -1.72804786
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/T.Denticola_WT/FlaB1_core_monox33_real_refine.pdb
+Chain information for FlaB1_core_monox33_real_refine.pdb #5
+---
+Chain | Description
+B C D E F G H I J K L M N O P Q R S T U V W X Y Z a b c d e f g h | No description available
+> select subtract #14
+Nothing selected
+> select add #5
+atoms, 72435 bonds, 9438 residues, 1 model selected
+> hide sel atoms
+> show sel cartoons
+> mmaker #5 to #14
+Computing secondary structure
+Parameters
+---
+Chain pairing | bb
+Alignment algorithm | Needleman-Wunsch
+Similarity matrix | BLOSUM-62
+SS fraction | 0.3
+Gap open (HH/SS/other) | 18/18/6
+Gap extend | 1
+SS matrix |  |  | H | S | O
+---|---|---|---
+H | 6 | -9 | -6
+S |  | 6 | -6
+O |  |  | 4
+Iteration cutoff | 2
+Matchmaker FlaB1_core_monox33_real_refine.pdb, chain I (#14) with
+FlaB1_core_monox33_real_refine.pdb, chain I (#5), sequence alignment score =
+.8
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+> ui mousemode right select
+> ui mousemode right "translate selected models"
+> select subtract #5
+Nothing selected
+> select add #5
+atoms, 72435 bonds, 9438 residues, 1 model selected
+> view matrix models
+> #5,-0.37188,0.92788,0.027252,80.22,0.92828,0.37168,0.012234,-57.153,0.0012229,0.029847,-0.99955,514.44
+> view matrix models
+> #5,-0.37188,0.92788,0.027252,60.404,0.92828,0.37168,0.012234,-66.408,0.0012229,0.029847,-0.99955,375.29
+> view matrix models
+> #5,-0.37188,0.92788,0.027252,59.181,0.92828,0.37168,0.012234,-55.48,0.0012229,0.029847,-0.99955,375.08
+> view matrix models
+> #5,-0.37188,0.92788,0.027252,71.632,0.92828,0.37168,0.012234,-63.756,0.0012229,0.029847,-0.99955,371.35
+> view matrix models
+> #5,-0.37188,0.92788,0.027252,71.116,0.92828,0.37168,0.012234,-52.65,0.0012229,0.029847,-0.99955,370.98
+> view matrix models
+> #5,-0.37188,0.92788,0.027252,79.13,0.92828,0.37168,0.012234,-53.765,0.0012229,0.029847,-0.99955,370.14
+> view matrix models
+> #5,-0.37188,0.92788,0.027252,79.533,0.92828,0.37168,0.012234,-54.686,0.0012229,0.029847,-0.99955,370.83
+> fitmap #5 inMap #6
+Fit molecule FlaB1_core_monox33_real_refine.pdb (#5) to map
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) using 72006 atoms
+average map value = 0.4053, steps = 84
+shifted from previous position = 5.08
+rotated from previous position = 4.9 degrees
+atoms outside contour = 45468, contour level = 0.5
+Position of FlaB1_core_monox33_real_refine.pdb (#5) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.41924698 0.90777748 0.01311522 95.18518014
+.90783565 0.41931600 -0.00291805 -62.74885403
+-0.00814836 0.01068307 -0.99990973 377.28547263
+Axis 0.53883973 0.84240515 0.00230451
+Axis point 69.07423347 0.00000000 188.37062473
+Rotation angle (degrees) 179.27686478
+Shift along axis -0.70094281
+> select subtract #5
+Nothing selected
+> select add #6
+models selected
+> select add #6
+models selected
+> select add #6
+models selected
+> select add #6
+models selected
+> select add #6
+models selected
+> select add #6
+models selected
+> select add #6
+models selected
+> select add #6
+models selected
+> show #6.2 models
+> select add #6.2
+models selected
+> select add #6.2
+models selected
+> close #6.2
+> select subtract #6
+Nothing selected
+> select add #5
+atoms, 72435 bonds, 9438 residues, 1 model selected
+> select subtract #5
+Nothing selected
+> select add #14
+atoms, 72435 bonds, 9438 residues, 1 model selected
+> select subtract #14
+Nothing selected
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/T.Denticola_WT/FlaB1_core_monox33_real_refine.pdb
+Chain information for FlaB1_core_monox33_real_refine.pdb #15
+---
+Chain | Description
+B C D E F G H I J K L M N O P Q R S T U V W X Y Z a b c d e f g h | No description available
+> show #5,14-15 cartoons
+> hide #5,14-15 atoms
+> mmaker #15 to #14
+Computing secondary structure
+Parameters
+---
+Chain pairing | bb
+Alignment algorithm | Needleman-Wunsch
+Similarity matrix | BLOSUM-62
+SS fraction | 0.3
+Gap open (HH/SS/other) | 18/18/6
+Gap extend | 1
+SS matrix |  |  | H | S | O
+---|---|---|---
+H | 6 | -9 | -6
+S |  | 6 | -6
+O |  |  | 4
+Iteration cutoff | 2
+Matchmaker FlaB1_core_monox33_real_refine.pdb, chain I (#14) with
+FlaB1_core_monox33_real_refine.pdb, chain I (#15), sequence alignment score =
+.8
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+> select add #15
+atoms, 72435 bonds, 9438 residues, 1 model selected
+> mmaker #15 to #5
+Computing secondary structure
+Parameters
+---
+Chain pairing | bb
+Alignment algorithm | Needleman-Wunsch
+Similarity matrix | BLOSUM-62
+SS fraction | 0.3
+Gap open (HH/SS/other) | 18/18/6
+Gap extend | 1
+SS matrix |  |  | H | S | O
+---|---|---|---
+H | 6 | -9 | -6
+S |  | 6 | -6
+O |  |  | 4
+Iteration cutoff | 2
+Matchmaker FlaB1_core_monox33_real_refine.pdb, chain I (#5) with
+FlaB1_core_monox33_real_refine.pdb, chain I (#15), sequence alignment score =
+.8
+RMSD between 286 pruned atom pairs is 0.000 angstroms; (across all 286 pairs:
+.000)
+> view matrix models
+> #15,-0.44202,0.89701,0.00028347,92.207,0.89692,0.44198,-0.013573,-65.37,-0.012301,-0.0057453,-0.99991,222.98
+> view matrix models
+> #15,-0.44202,0.89701,0.00028347,98.916,0.89692,0.44198,-0.013573,-62.208,-0.012301,-0.0057453,-0.99991,222.59
+> view matrix models
+> #15,-0.44202,0.89701,0.00028347,97.908,0.89692,0.44198,-0.013573,-68.942,-0.012301,-0.0057453,-0.99991,222.26
+> view matrix models
+> #15,-0.44202,0.89701,0.00028347,101.36,0.89692,0.44198,-0.013573,-65.998,-0.012301,-0.0057453,-0.99991,223.67
+> view matrix models
+> #15,-0.44202,0.89701,0.00028347,100.11,0.89692,0.44198,-0.013573,-68.325,-0.012301,-0.0057453,-0.99991,223.55
+> fitmap #15 inMap #6
+Fit molecule FlaB1_core_monox33_real_refine.pdb (#15) to map
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) using 72006 atoms
+average map value = 0.209, steps = 96
+shifted from previous position = 1.46
+rotated from previous position = 4.82 degrees
+atoms outside contour = 63929, contour level = 0.5
+Position of FlaB1_core_monox33_real_refine.pdb (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.48754875 0.87306736 -0.00704275 118.36363049
+.87277970 0.48713937 -0.03083544 -66.82669352
+-0.02349061 -0.02118055 -0.99949966 228.82133106
+Axis 0.50617064 0.86230149 -0.01508091
+Axis point 79.42810236 0.00000000 113.49737914
+Rotation angle (degrees) 179.45355114
+Shift along axis -1.16339710
+> select subtract #15
+Nothing selected
+> hide #!6 models
+> show #!6 models
+> combine #5,14,15
+Remapping chain ID 'B' in FlaB1_core_monox33_real_refine.pdb #14 to 'i'
+Remapping chain ID 'C' in FlaB1_core_monox33_real_refine.pdb #14 to 'j'
+Remapping chain ID 'D' in FlaB1_core_monox33_real_refine.pdb #14 to 'k'
+Remapping chain ID 'E' in FlaB1_core_monox33_real_refine.pdb #14 to 'l'
+Remapping chain ID 'F' in FlaB1_core_monox33_real_refine.pdb #14 to 'm'
+Remapping chain ID 'G' in FlaB1_core_monox33_real_refine.pdb #14 to 'n'
+Remapping chain ID 'H' in FlaB1_core_monox33_real_refine.pdb #14 to 'o'
+Remapping chain ID 'I' in FlaB1_core_monox33_real_refine.pdb #14 to 'p'
+Remapping chain ID 'J' in FlaB1_core_monox33_real_refine.pdb #14 to 'q'
+Remapping chain ID 'K' in FlaB1_core_monox33_real_refine.pdb #14 to 'r'
+Remapping chain ID 'L' in FlaB1_core_monox33_real_refine.pdb #14 to 's'
+Remapping chain ID 'M' in FlaB1_core_monox33_real_refine.pdb #14 to 't'
+Remapping chain ID 'N' in FlaB1_core_monox33_real_refine.pdb #14 to 'u'
+Remapping chain ID 'O' in FlaB1_core_monox33_real_refine.pdb #14 to 'v'
+Remapping chain ID 'P' in FlaB1_core_monox33_real_refine.pdb #14 to 'w'
+Remapping chain ID 'Q' in FlaB1_core_monox33_real_refine.pdb #14 to 'x'
+Remapping chain ID 'R' in FlaB1_core_monox33_real_refine.pdb #14 to 'y'
+Remapping chain ID 'S' in FlaB1_core_monox33_real_refine.pdb #14 to 'z'
+Remapping chain ID 'T' in FlaB1_core_monox33_real_refine.pdb #14 to '1'
+Remapping chain ID 'U' in FlaB1_core_monox33_real_refine.pdb #14 to '2'
+Remapping chain ID 'V' in FlaB1_core_monox33_real_refine.pdb #14 to '3'
+Remapping chain ID 'W' in FlaB1_core_monox33_real_refine.pdb #14 to '4'
+Remapping chain ID 'X' in FlaB1_core_monox33_real_refine.pdb #14 to '5'
+Remapping chain ID 'Y' in FlaB1_core_monox33_real_refine.pdb #14 to '6'
+Remapping chain ID 'Z' in FlaB1_core_monox33_real_refine.pdb #14 to '7'
+Remapping chain ID 'a' in FlaB1_core_monox33_real_refine.pdb #14 to '8'
+Remapping chain ID 'b' in FlaB1_core_monox33_real_refine.pdb #14 to '9'
+Remapping chain ID 'c' in FlaB1_core_monox33_real_refine.pdb #14 to '0'
+Remapping chain ID 'd' in FlaB1_core_monox33_real_refine.pdb #14 to 'AA'
+Remapping chain ID 'e' in FlaB1_core_monox33_real_refine.pdb #14 to 'AB'
+Remapping chain ID 'f' in FlaB1_core_monox33_real_refine.pdb #14 to 'AC'
+Remapping chain ID 'g' in FlaB1_core_monox33_real_refine.pdb #14 to 'AD'
+Remapping chain ID 'h' in FlaB1_core_monox33_real_refine.pdb #14 to 'AE'
+Remapping chain ID 'B' in FlaB1_core_monox33_real_refine.pdb #15 to 'AF'
+Remapping chain ID 'C' in FlaB1_core_monox33_real_refine.pdb #15 to 'AG'
+Remapping chain ID 'D' in FlaB1_core_monox33_real_refine.pdb #15 to 'AH'
+Remapping chain ID 'E' in FlaB1_core_monox33_real_refine.pdb #15 to 'AI'
+Remapping chain ID 'F' in FlaB1_core_monox33_real_refine.pdb #15 to 'AJ'
+Remapping chain ID 'G' in FlaB1_core_monox33_real_refine.pdb #15 to 'AK'
+Remapping chain ID 'H' in FlaB1_core_monox33_real_refine.pdb #15 to 'AL'
+Remapping chain ID 'I' in FlaB1_core_monox33_real_refine.pdb #15 to 'AM'
+Remapping chain ID 'J' in FlaB1_core_monox33_real_refine.pdb #15 to 'AN'
+Remapping chain ID 'K' in FlaB1_core_monox33_real_refine.pdb #15 to 'AO'
+Remapping chain ID 'L' in FlaB1_core_monox33_real_refine.pdb #15 to 'AP'
+Remapping chain ID 'M' in FlaB1_core_monox33_real_refine.pdb #15 to 'AQ'
+Remapping chain ID 'N' in FlaB1_core_monox33_real_refine.pdb #15 to 'AR'
+Remapping chain ID 'O' in FlaB1_core_monox33_real_refine.pdb #15 to 'AS'
+Remapping chain ID 'P' in FlaB1_core_monox33_real_refine.pdb #15 to 'AT'
+Remapping chain ID 'Q' in FlaB1_core_monox33_real_refine.pdb #15 to 'AU'
+Remapping chain ID 'R' in FlaB1_core_monox33_real_refine.pdb #15 to 'AV'
+Remapping chain ID 'S' in FlaB1_core_monox33_real_refine.pdb #15 to 'AW'
+Remapping chain ID 'T' in FlaB1_core_monox33_real_refine.pdb #15 to 'AX'
+Remapping chain ID 'U' in FlaB1_core_monox33_real_refine.pdb #15 to 'AY'
+Remapping chain ID 'V' in FlaB1_core_monox33_real_refine.pdb #15 to 'AZ'
+Remapping chain ID 'W' in FlaB1_core_monox33_real_refine.pdb #15 to 'Aa'
+Remapping chain ID 'X' in FlaB1_core_monox33_real_refine.pdb #15 to 'Ab'
+Remapping chain ID 'Y' in FlaB1_core_monox33_real_refine.pdb #15 to 'Ac'
+Remapping chain ID 'Z' in FlaB1_core_monox33_real_refine.pdb #15 to 'Ad'
+Remapping chain ID 'a' in FlaB1_core_monox33_real_refine.pdb #15 to 'Ae'
+Remapping chain ID 'b' in FlaB1_core_monox33_real_refine.pdb #15 to 'Af'
+Remapping chain ID 'c' in FlaB1_core_monox33_real_refine.pdb #15 to 'Ag'
+Remapping chain ID 'd' in FlaB1_core_monox33_real_refine.pdb #15 to 'Ah'
+Remapping chain ID 'e' in FlaB1_core_monox33_real_refine.pdb #15 to 'Ai'
+Remapping chain ID 'f' in FlaB1_core_monox33_real_refine.pdb #15 to 'Aj'
+Remapping chain ID 'g' in FlaB1_core_monox33_real_refine.pdb #15 to 'Ak'
+Remapping chain ID 'h' in FlaB1_core_monox33_real_refine.pdb #15 to 'Al'
+> rename #5,14,15 id #60
+> rename #16id #5
+Missing or invalid "models" argument: only initial part "#16" of atom
+specifier valid
+> rename #16 id #5
+> color #5 #fff6b6ff
+> color #5 #f3ad5bff
+> color #5 #fff6b6ff
+> hide #!201 models
+> show #!201 models
+> hide #!60 models
+> rename #60 FlaB1_core_monoxn_long.pdb
+> rename #5 FlaB1_core_long
+> rename #5 FlaB1_core_long.pdb
+> hide #5 models
+> show #5 models
+Alignment identifier is 1
+Alignment identifier is 2
+Alignment identifier is 3
+Alignment identifier is 4
+Alignment identifier is 5
+Alignment identifier is 6
+Alignment identifier is 7
+Alignment identifier is 8
+Alignment identifier is 9
+Alignment identifier is 10
+Alignment identifier is 11
+Alignment identifier is 12
+Alignment identifier is 13
+Alignment identifier is 14
+Alignment identifier is 15
+Alignment identifier is 16
+> select add #5
+atoms, 217305 bonds, 28314 residues, 1 model selected
+Alignment identifier is 1
+> ui tool show "Volume Viewer"
+> select subtract #5
+Nothing selected
+> select #5/B-z,1-9,0,AA-Al:127
+atoms, 495 bonds, 99 residues, 1 model selected
+> select #5/B-z,1-9,0,AA-Al:126-127
+atoms, 1089 bonds, 198 residues, 1 model selected
+> select #5/B-z,1-9,0,AA-Al:126-127
+atoms, 1089 bonds, 198 residues, 1 model selected
+> select #5/B-z,1-9,0,AA-Al:126-127
+atoms, 1089 bonds, 198 residues, 1 model selected
+> select #5/B-z,1-9,0,AA-Al:126
+atoms, 495 bonds, 99 residues, 1 model selected
+> select #5/B-z,1-9,0,AA-Al:126
+atoms, 495 bonds, 99 residues, 1 model selected
+> color sel magenta
+> select add #5
+atoms, 217305 bonds, 28314 residues, 1 model selected
+> select subtract #5
+Nothing selected
+> select add #201
+models selected
+> view matrix models #201,1,0,0,-0.038505,0,1,0,0.04598,0,0,1,0.0426
+> select subtract #201
+Nothing selected
+> hide #!201.2 models
+> show #!201.2 models
+> select add #201.2
+models selected
+> select subtract #201.2
+Nothing selected
+> select add #201.3
+models selected
+> select subtract #201.3
+Nothing selected
+> select add #201.1
+models selected
+> select add #201.2
+models selected
+> select add #201.4
+models selected
+> select add #201.5
+models selected
+> select add #201
+models selected
+> select subtract #201
+Nothing selected
+> select add #201
+models selected
+> select subtract #201.3
+models selected
+> view matrix models #201,1,0,0,0.075038,0,1,0,-0.083601,0,0,1,-0.13601
+> select add #201.3
+models selected
+> select subtract #201.3
+models selected
+> select add #201.3
+models selected
+> select subtract #201.4
+models selected
+> select add #201.4
+models selected
+> select subtract #201.3
+models selected
+> select add #201
+models selected
+> select subtract #201
+Nothing selected
+> hide #!201 models
+> show #!201 models
+> hide #!201.3 models
+> select add #201
+models selected
+> select subtract #201.3
+models selected
+> show #!201.3 models
+> view matrix models #201,1,0,0,-1.3798,0,1,0,2.0298,0,0,1,-1.8453
+> view matrix models #201,1,0,0,-1.787,0,1,0,2.959,0,0,1,-1.8562
+> view matrix models #201,1,0,0,-0.34812,0,1,0,2.3353,0,0,1,-2.5448
+> view matrix models #201,1,0,0,-0.74601,0,1,0,2.6174,0,0,1,-1.8671
+> view matrix models #201,1,0,0,-0.906,0,1,0,2.9028,0,0,1,-1.4726
+> view matrix models #201,1,0,0,-0.74364,0,1,0,3.7058,0,0,1,-1.5069
+> view matrix models #201,1,0,0,-0.97533,0,1,0,3.1195,0,0,1,-1.0379
+> view matrix models #201,1,0,0,-0.90261,0,1,0,3.319,0,0,1,-1.3941
+> view matrix models #201,1,0,0,-0.64684,0,1,0,3.4522,0,0,1,-1.489
+> view matrix models #201,1,0,0,-0.73034,0,1,0,3.7648,0,0,1,-1.0827
+> view matrix models #201,1,0,0,-0.48823,0,1,0,3.3355,0,0,1,-1.1554
+> view matrix models #201,1,0,0,-0.5621,0,1,0,3.2808,0,0,1,-1.2906
+> view matrix models #201,1,0,0,1.4702,0,1,0,-0.40641,0,0,1,-0.13132
+> view matrix models #201,1,0,0,0.27103,0,1,0,-0.0054869,0,0,1,0.1358
+> view matrix models #201,1,0,0,0.083533,0,1,0,-0.036138,0,0,1,-0.011917
+> select subtract #201.4
+models selected
+> select add #201.4
+models selected
+> select add #201.3
+models selected
+> select subtract #201
+Nothing selected
+> select add #201.1
+models selected
+> view matrix models #201.1,1,0,0,-0.36071,0,1,0,2.5971,0,0,1,-1.6468
+> select add #201
+models selected
+> select subtract #201
+Nothing selected
+> select add #201.1
+models selected
+> view matrix models #201.1,1,0,0,-3.9419,0,1,0,0.62331,0,0,1,50.72
+> view matrix models #201.1,1,0,0,-1.4412,0,1,0,0.99037,0,0,1,48.939
+> view matrix models #201.1,1,0,0,-0.91173,0,1,0,0.70618,0,0,1,51.798
+> view matrix models #201.1,1,0,0,-0.32731,0,1,0,0.33108,0,0,1,51.439
+> rename #201 #14
+No name or id option specified for renaming
+> rename #201 id #14
+> fitmap #14.1 inMap #6
+Fit map S126_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 24 points
+correlation = 0.9613, correlation about mean = 0.7073, overlap = 14.51
+steps = 68, shift = 1.31, angle = 26.4 degrees
+Position of S126_glycan.mrc (#14.1) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.94690112 -0.30082636 -0.11349788 101.61308186
+.24980765 0.91056668 -0.32933941 35.24369840
+.20242136 0.28349922 0.93736534 -39.40193855
+Axis 0.69453829 -0.35803554 0.62404096
+Axis point 0.00000000 230.27436643 80.75608838
+Rotation angle (degrees) 26.17946166
+Shift along axis 33.36725640
+> view matrix models
+> #14.1,0.94285,-0.31995,-0.093077,102.63,0.27562,0.90582,-0.32176,29.926,0.18726,0.27772,0.94224,-36.968
+> fitmap #14.1 inMap #6
+Fit map S126_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 24 points
+correlation = 0.9612, correlation about mean = 0.7074, overlap = 14.51
+steps = 48, shift = 1.66, angle = 0.0334 degrees
+Position of S126_glycan.mrc (#14.1) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.94682519 -0.30115886 -0.11324932 101.64252156
+.25010837 0.91033106 -0.32976228 35.32514249
+.20240521 0.28390263 0.93724673 -39.45485024
+Axis 0.69478615 -0.35738135 0.62414003
+Axis point 0.00000000 230.17224265 80.69942932
+Rotation angle (degrees) 26.20738083
+Shift along axis 33.36991707
+> select subtract #14.1
+Nothing selected
+> select add #14.2
+models selected
+> select subtract #14.2
+Nothing selected
+> select add #14.3
+models selected
+> fitmap #14.3 inMap #6
+Fit map S126_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 24 points
+correlation = 0.9971, correlation about mean = 0.9651, overlap = 17.59
+steps = 64, shift = 0.318, angle = 3.05 degrees
+Position of S126_glycan.mrc (#14.3) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99911429 -0.03400875 -0.02477970 12.98565660
+.03318958 0.99891231 -0.03275139 0.01935706
+.02586658 0.03189996 0.99915630 -12.88284070
+Axis 0.60925566 -0.47727588 0.63325766
+Axis point 15.74563206 386.00554243 0.00000000
+Rotation angle (degrees) 3.04140774
+Shift along axis -0.25581144
+> select subtract #14.3
+Nothing selected
+> select add #14.1
+models selected
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14.1,0.95977,-0.19713,-0.19996,98.202,0.14176,0.95488,-0.26096,39.122,0.24238,0.22212,0.94441,-39.611
+> view matrix models
+> #14.1,0.93491,-0.26184,-0.23956,127.25,0.23036,0.96122,-0.15161,-10.221,0.26997,0.086556,0.95897,-21.761
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14.1,0.93491,-0.26184,-0.23956,127.56,0.23036,0.96122,-0.15161,-10.857,0.26997,0.086556,0.95897,-21.657
+> view matrix models
+> #14.1,0.93491,-0.26184,-0.23956,127.95,0.23036,0.96122,-0.15161,-10.932,0.26997,0.086556,0.95897,-22.262
+> view matrix models
+> #14.1,0.93491,-0.26184,-0.23956,127.76,0.23036,0.96122,-0.15161,-10.338,0.26997,0.086556,0.95897,-22.13
+> view matrix models
+> #14.1,0.93491,-0.26184,-0.23956,127.65,0.23036,0.96122,-0.15161,-10.548,0.26997,0.086556,0.95897,-21.857
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14.1,0.91918,-0.28521,-0.27161,144.07,0.26421,0.95797,-0.11178,-27.754,0.29208,0.030978,0.95589,-14.978
+> view matrix models
+> #14.1,0.93644,-0.14241,-0.32062,122.13,0.14152,0.98959,-0.026196,-25.135,0.32101,-0.020844,0.94685,-9.0973
+> view matrix models
+> #14.1,0.95185,-0.16486,-0.25845,107.99,0.16708,0.98585,-0.013495,-33.657,0.25702,-0.030336,0.96593,3.8363
+> view matrix models
+> #14.1,0.88812,-0.38017,-0.25828,168.09,0.32937,0.91839,-0.21926,-9.4151,0.32056,0.10966,0.94086,-34.581
+> view matrix models
+> #14.1,0.87247,-0.3404,-0.35061,185.99,0.25781,0.93013,-0.26151,15.797,0.41513,0.13777,0.89927,-53.372
+> view matrix models
+> #14.1,0.86556,-0.29949,-0.40139,191.48,0.18403,0.93562,-0.30125,42.243,0.46577,0.18689,0.86495,-67.578
+> fitmap #14.1 inMap #6
+Fit map S126_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 24 points
+correlation = 0.9615, correlation about mean = 0.7096, overlap = 14.51
+steps = 64, shift = 0.486, angle = 18.4 degrees
+Position of S126_glycan.mrc (#14.1) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.94833925 -0.29666600 -0.11243640 100.14190352
+.24605668 0.91148533 -0.32962192 36.03733250
+.20027174 0.28492768 0.93739396 -39.18329334
+Axis 0.70034176 -0.35636273 0.61848769
+Axis point 0.00000000 227.71510566 83.91862947
+Rotation angle (degrees) 26.02413970
+Shift along axis 33.05681085
+> fitmap #14.1 inMap #6
+Fit map S126_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 24 points
+correlation = 0.9616, correlation about mean = 0.7069, overlap = 14.47
+steps = 60, shift = 0.0206, angle = 0.432 degrees
+Position of S126_glycan.mrc (#14.1) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.94670693 -0.30271235 -0.11005096 101.21057737
+.25171503 0.90849273 -0.33358731 36.22441591
+.20096150 0.28810794 0.93627362 -39.73031344
+Axis 0.69918596 -0.34977837 0.62353355
+Axis point 0.00000000 227.93321963 81.00411546
+Rotation angle (degrees) 26.39679338
+Shift along axis 33.32131438
+> view matrix models
+> #14.1,0.91945,-0.35742,-0.16389,132.5,0.33651,0.93088,-0.14222,-32.07,0.20339,0.075613,0.97617,-7.4329
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14.1,0.91945,-0.35742,-0.16389,132.87,0.33651,0.93088,-0.14222,-32.983,0.20339,0.075613,0.97617,-7.5805
+> view matrix models
+> #14.1,0.91945,-0.35742,-0.16389,133.23,0.33651,0.93088,-0.14222,-32.882,0.20339,0.075613,0.97617,-7.7816
+> view matrix models
+> #14.1,0.91945,-0.35742,-0.16389,133.16,0.33651,0.93088,-0.14222,-32.516,0.20339,0.075613,0.97617,-7.631
+> select add #14.3
+models selected
+> select subtract #14.1
+models selected
+> view matrix models
+> #14.3,0.99821,-0.058706,-0.011056,14.412,0.058448,0.99804,-0.022383,-5.5155,0.012348,0.021697,0.99969,-9.2645
+> view matrix models
+> #14.3,0.99821,-0.058706,-0.011056,14.603,0.058448,0.99804,-0.022383,-5.6792,0.012348,0.021697,0.99969,-8.9479
+> view matrix models
+> #14.3,0.99821,-0.058706,-0.011056,14.682,0.058448,0.99804,-0.022383,-5.5966,0.012348,0.021697,0.99969,-8.9804
+> select add #14.1
+models selected
+> select subtract #14.3
+models selected
+> view matrix models
+> #14.1,0.91945,-0.35742,-0.16389,132.31,0.33651,0.93088,-0.14222,-31.593,0.20339,0.075613,0.97617,-10.287
+> view matrix models
+> #14.1,0.91945,-0.35742,-0.16389,120.05,0.33651,0.93088,-0.14222,-31.566,0.20339,0.075613,0.97617,-60.718
+> view matrix models
+> #14.1,0.91945,-0.35742,-0.16389,124.2,0.33651,0.93088,-0.14222,-24.253,0.20339,0.075613,0.97617,-61.91
+> view matrix models
+> #14.1,0.91945,-0.35742,-0.16389,132.14,0.33651,0.93088,-0.14222,-31.112,0.20339,0.075613,0.97617,-60.725
+> fitmap #14.1 inMap #6
+Fit map S126_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 24 points
+correlation = 0.9971, correlation about mean = 0.9655, overlap = 17.6
+steps = 52, shift = 1.02, angle = 20.2 degrees
+Position of S126_glycan.mrc (#14.1) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99892484 -0.03702774 -0.02789456 14.42396248
+.03583713 0.99847311 -0.04203730 1.72456524
+.02940851 0.04099244 0.99872656 -15.54835399
+Axis 0.66719358 -0.46046442 0.58551281
+Axis point 0.00000000 376.13701953 24.35810914
+Rotation angle (degrees) 3.56742696
+Shift along axis -0.27428619
+> fitmap #14.1 inMap #14.3
+Fit map S126_glycan.mrc in map S126_glycan.mrc using 24 points
+correlation = 1, correlation about mean = 0.9995, overlap = 19.65
+steps = 68, shift = 0.236, angle = 0.855 degrees
+Position of S126_glycan.mrc (#14.1) relative to S126_glycan.mrc (#14.3)
+coordinates:
+Matrix rotation and translation
+.99999644 0.00260786 -0.00055821 -0.41160445
+-0.00260536 0.99998678 0.00443350 -0.44277778
+.00056977 -0.00443203 0.99999002 0.79047272
+Axis -0.85687224 -0.10902173 -0.50386926
+Axis point 0.00000000 178.43226517 100.33752474
+Rotation angle (degrees) 0.29640309
+Shift along axis 0.00266992
+> fitmap #14.1 inMap #14.3
+Fit map S126_glycan.mrc in map S126_glycan.mrc using 24 points
+correlation = 0.9999, correlation about mean = 0.9994, overlap = 19.62
+steps = 48, shift = 0.00265, angle = 0.0546 degrees
+Position of S126_glycan.mrc (#14.1) relative to S126_glycan.mrc (#14.3)
+coordinates:
+Matrix rotation and translation
+.99999728 0.00207345 -0.00106927 -0.17794582
+-0.00206934 0.99999052 0.00383158 -0.43062153
+.00107720 -0.00382935 0.99999209 0.54233642
+Axis -0.85406675 -0.23929613 -0.46185208
+Axis point 0.00000000 141.94187477 112.45500382
+Rotation angle (degrees) 0.25697076
+Shift along axis 0.00454447
+> select subtract #14.1
+Nothing selected
+> select add #14.1
+models selected
+> view matrix models
+> #14.1,0.99832,-0.056593,-0.012348,6.352,0.056358,0.99824,-0.018621,-10.567,0.01338,0.017894,0.99975,44.027
+> view matrix models
+> #14.1,0.99832,-0.056593,-0.012348,20.69,0.056358,0.99824,-0.018621,-15.333,0.01338,0.017894,0.99975,45.72
+> view matrix models
+> #14.1,0.99832,-0.056593,-0.012348,17.856,0.056358,0.99824,-0.018621,-8.4513,0.01338,0.017894,0.99975,46.729
+> view matrix models
+> #14.1,0.99832,-0.056593,-0.012348,16.772,0.056358,0.99824,-0.018621,-9.389,0.01338,0.017894,0.99975,45.76
+> view matrix models
+> #14.1,0.99832,-0.056593,-0.012348,16.514,0.056358,0.99824,-0.018621,-8.4794,0.01338,0.017894,0.99975,45.754
+> view matrix models
+> #14.1,0.99832,-0.056593,-0.012348,15.795,0.056358,0.99824,-0.018621,-9.0405,0.01338,0.017894,0.99975,45.842
+> view matrix models
+> #14.1,0.99832,-0.056593,-0.012348,15.626,0.056358,0.99824,-0.018621,-8.5229,0.01338,0.017894,0.99975,45.352
+> view matrix models
+> #14.1,0.99832,-0.056593,-0.012348,15.704,0.056358,0.99824,-0.018621,-8.5039,0.01338,0.017894,0.99975,45.338
+> view matrix models
+> #14.1,0.99832,-0.056593,-0.012348,15.675,0.056358,0.99824,-0.018621,-8.4573,0.01338,0.017894,0.99975,45.393
+> view matrix models
+> #14.1,0.99832,-0.056593,-0.012348,15.727,0.056358,0.99824,-0.018621,-8.4415,0.01338,0.017894,0.99975,45.389
+> view matrix models
+> #14.1,0.99832,-0.056593,-0.012348,15.764,0.056358,0.99824,-0.018621,-8.5413,0.01338,0.017894,0.99975,45.393
+> view matrix models
+> #14.1,0.99832,-0.056593,-0.012348,15.852,0.056358,0.99824,-0.018621,-8.5146,0.01338,0.017894,0.99975,45.344
+> select subtract #14.1
+Nothing selected
+> select add #14.2
+models selected
+> view matrix models #14.2,1,0,0,8.4481,0,1,0,7.7924,0,0,1,-54.703
+> view matrix models #14.2,1,0,0,-2.4535,0,1,0,1.185,0,0,1,-50.103
+> view matrix models #14.2,1,0,0,-3.6434,0,1,0,3.3839,0,0,1,-56.616
+> view matrix models #14.2,1,0,0,-2.8327,0,1,0,2.8553,0,0,1,-56.474
+> view matrix models #14.2,1,0,0,-2.6039,0,1,0,2.8692,0,0,1,-56.258
+> select subtract #14.2
+Nothing selected
+> select add #14.3
+models selected
+> select subtract #14.3
+Nothing selected
+> select add #14.4
+models selected
+> view matrix models #14.4,1,0,0,23.574,0,1,0,4.1302,0,0,1,-98.584
+> view matrix models #14.4,1,0,0,-4.4442,0,1,0,3.9456,0,0,1,-103.74
+> view matrix models #14.4,1,0,0,-5.9057,0,1,0,4.3434,0,0,1,-107.84
+> view matrix models #14.4,1,0,0,-3.0777,0,1,0,4.3621,0,0,1,-107.16
+> view matrix models #14.4,1,0,0,-3.0356,0,1,0,4.5279,0,0,1,-108.93
+> view matrix models #14.4,1,0,0,-3.0605,0,1,0,4.8002,0,0,1,-109.59
+> view matrix models #14.4,1,0,0,-2.8319,0,1,0,4.5662,0,0,1,-109.39
+> select subtract #14.4
+Nothing selected
+> select add #14.5
+models selected
+> view matrix models #14.5,1,0,0,-26.515,0,1,0,23.581,0,0,1,24.9
+> view matrix models #14.5,1,0,0,-25.63,0,1,0,34.221,0,0,1,23.858
+> view matrix models #14.5,1,0,0,-23.014,0,1,0,26.918,0,0,1,24.781
+> view matrix models #14.5,1,0,0,-25.321,0,1,0,20.03,0,0,1,78.875
+> view matrix models #14.5,1,0,0,-20.48,0,1,0,26.458,0,0,1,77.274
+> view matrix models #14.5,1,0,0,-19.288,0,1,0,25.414,0,0,1,80.643
+> view matrix models #14.5,1,0,0,-19.31,0,1,0,25.063,0,0,1,80.8
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14.5,0.98572,-0.16762,-0.015981,22.766,0.16784,0.98572,0.01394,-16.22,0.013416,-0.016423,0.99978,80.99
+> view matrix models
+> #14.5,0.97393,-0.22664,-0.010229,36.477,0.22681,0.97371,0.020977,-29.795,0.0052059,-0.02275,0.99973,84.312
+> view matrix models
+> #14.5,0.97131,-0.23768,0.0079506,35.004,0.23712,0.97048,0.04405,-37.217,-0.018186,-0.040901,0.999,93.946
+> view matrix models
+> #14.5,0.94705,-0.32077,0.01394,56.68,0.31954,0.94587,0.056718,-55.254,-0.031379,-0.049261,0.99829,99.062
+> select subtract #14.5
+Nothing selected
+> select add #14.6
+models selected
+> select add #14.7
+models selected
+> select add #14.8
+models selected
+> view matrix models
+> #14.6,0.28415,-0.43657,-0.85362,471.3,-0.072482,0.87799,-0.47316,157.4,0.95604,0.19632,0.21784,-84.255,#14.7,0.28415,-0.43657,-0.85362,471.3,-0.072482,0.87799,-0.47316,157.4,0.95604,0.19632,0.21784,-84.255,#14.8,0.28415,-0.43657,-0.85362,471.3,-0.072482,0.87799,-0.47316,157.4,0.95604,0.19632,0.21784,-84.255
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14.6,0.28415,-0.43657,-0.85362,423.77,-0.072482,0.87799,-0.47316,155.14,0.95604,0.19632,0.21784,-23.257,#14.7,0.28415,-0.43657,-0.85362,423.77,-0.072482,0.87799,-0.47316,155.14,0.95604,0.19632,0.21784,-23.257,#14.8,0.28415,-0.43657,-0.85362,423.77,-0.072482,0.87799,-0.47316,155.14,0.95604,0.19632,0.21784,-23.257
+> view matrix models
+> #14.6,0.28415,-0.43657,-0.85362,458,-0.072482,0.87799,-0.47316,190.98,0.95604,0.19632,0.21784,-18.932,#14.7,0.28415,-0.43657,-0.85362,458,-0.072482,0.87799,-0.47316,190.98,0.95604,0.19632,0.21784,-18.932,#14.8,0.28415,-0.43657,-0.85362,458,-0.072482,0.87799,-0.47316,190.98,0.95604,0.19632,0.21784,-18.932
+> view matrix models
+> #14.6,0.28415,-0.43657,-0.85362,457.81,-0.072482,0.87799,-0.47316,185.46,0.95604,0.19632,0.21784,-2.2243,#14.7,0.28415,-0.43657,-0.85362,457.81,-0.072482,0.87799,-0.47316,185.46,0.95604,0.19632,0.21784,-2.2243,#14.8,0.28415,-0.43657,-0.85362,457.81,-0.072482,0.87799,-0.47316,185.46,0.95604,0.19632,0.21784,-2.2243
+> view matrix models
+> #14.6,0.28415,-0.43657,-0.85362,454.63,-0.072482,0.87799,-0.47316,183.46,0.95604,0.19632,0.21784,-0.46278,#14.7,0.28415,-0.43657,-0.85362,454.63,-0.072482,0.87799,-0.47316,183.46,0.95604,0.19632,0.21784,-0.46278,#14.8,0.28415,-0.43657,-0.85362,454.63,-0.072482,0.87799,-0.47316,183.46,0.95604,0.19632,0.21784,-0.46278
+> view matrix models
+> #14.6,0.28415,-0.43657,-0.85362,453.9,-0.072482,0.87799,-0.47316,183.43,0.95604,0.19632,0.21784,-3.1851,#14.7,0.28415,-0.43657,-0.85362,453.9,-0.072482,0.87799,-0.47316,183.43,0.95604,0.19632,0.21784,-3.1851,#14.8,0.28415,-0.43657,-0.85362,453.9,-0.072482,0.87799,-0.47316,183.43,0.95604,0.19632,0.21784,-3.1851
+> select add #14.5
+models selected
+> select subtract #14.5
+models selected
+> fitmap #14.6 inMap #14.5
+Fit map S126_glycan.mrc in map S126_glycan.mrc using 24 points
+correlation = 1, correlation about mean = 0.9998, overlap = 19.67
+steps = 76, shift = 1.79, angle = 79.7 degrees
+Position of S126_glycan.mrc (#14.6) relative to S126_glycan.mrc (#14.5)
+coordinates:
+Matrix rotation and translation
+.99999798 -0.00149984 -0.00135573 0.64550640
+.00149588 0.99999487 -0.00285553 0.33131867
+.00136002 0.00285345 0.99999501 -0.92930510
+Axis 0.81605109 -0.38819427 0.42821236
+Axis point 0.00000000 325.90880215 115.46352988
+Rotation angle (degrees) 0.20041706
+Shift along axis 0.00021026
+> fitmap #14.7 inMap #14.5
+Fit map S126_glycan.mrc in map S126_glycan.mrc using 24 points
+correlation = 1, correlation about mean = 0.9998, overlap = 19.67
+steps = 76, shift = 1.79, angle = 79.7 degrees
+Position of S126_glycan.mrc (#14.7) relative to S126_glycan.mrc (#14.5)
+coordinates:
+Matrix rotation and translation
+.99999798 -0.00149984 -0.00135573 0.64550640
+.00149588 0.99999487 -0.00285553 0.33131867
+.00136002 0.00285345 0.99999501 -0.92930510
+Axis 0.81605109 -0.38819427 0.42821236
+Axis point 0.00000000 325.90880215 115.46352988
+Rotation angle (degrees) 0.20041706
+Shift along axis 0.00021026
+> fitmap #14.8 inMap #14.5
+Fit map S126_glycan.mrc in map S126_glycan.mrc using 24 points
+correlation = 1, correlation about mean = 0.9998, overlap = 19.67
+steps = 76, shift = 1.79, angle = 79.7 degrees
+Position of S126_glycan.mrc (#14.8) relative to S126_glycan.mrc (#14.5)
+coordinates:
+Matrix rotation and translation
+.99999798 -0.00149984 -0.00135573 0.64550640
+.00149588 0.99999487 -0.00285553 0.33131867
+.00136002 0.00285345 0.99999501 -0.92930510
+Axis 0.81605109 -0.38819427 0.42821236
+Axis point 0.00000000 325.90880215 115.46352988
+Rotation angle (degrees) 0.20041706
+Shift along axis 0.00021026
+> select subtract #14.7
+models selected
+> select subtract #14.8
+models selected
+> view matrix models
+> #14.6,0.94659,-0.32215,0.013572,59.91,0.32103,0.94555,0.053584,-50.087,-0.030095,-0.046365,0.99847,43.12
+> view matrix models
+> #14.6,0.94659,-0.32215,0.013572,59.076,0.32103,0.94555,0.053584,-54.711,-0.030095,-0.046365,0.99847,41.647
+> view matrix models
+> #14.6,0.94659,-0.32215,0.013572,57.697,0.32103,0.94555,0.053584,-54.702,-0.030095,-0.046365,0.99847,43.274
+> select add #14.5
+models selected
+> select subtract #14.6
+models selected
+> view matrix models
+> #14.5,0.94705,-0.32077,0.01394,58.3,0.31954,0.94587,0.056718,-56.1,-0.031379,-0.049261,0.99829,96.019
+> view matrix models
+> #14.5,0.94705,-0.32077,0.01394,56.586,0.31954,0.94587,0.056718,-58.033,-0.031379,-0.049261,0.99829,97.673
+> view matrix models
+> #14.5,0.94705,-0.32077,0.01394,57.191,0.31954,0.94587,0.056718,-58.609,-0.031379,-0.049261,0.99829,96.303
+> select subtract #14.5
+Nothing selected
+> select add #14.6
+models selected
+> select subtract #14.6
+Nothing selected
+> select add #14.7
+models selected
+> view matrix models
+> #14.7,0.94659,-0.32215,0.013572,77.269,0.32103,0.94555,0.053584,-24.12,-0.030095,-0.046365,0.99847,12.715
+> view matrix models
+> #14.7,0.94659,-0.32215,0.013572,73.436,0.32103,0.94555,0.053584,-55.75,-0.030095,-0.046365,0.99847,-15.668
+> view matrix models
+> #14.7,0.94659,-0.32215,0.013572,61.963,0.32103,0.94555,0.053584,-48.066,-0.030095,-0.046365,0.99847,-15.053
+> view matrix models
+> #14.7,0.94659,-0.32215,0.013572,61.228,0.32103,0.94555,0.053584,-49.694,-0.030095,-0.046365,0.99847,-8.1997
+> view matrix models
+> #14.7,0.94659,-0.32215,0.013572,57.491,0.32103,0.94555,0.053584,-52.426,-0.030095,-0.046365,0.99847,-13.835
+> view matrix models
+> #14.7,0.94659,-0.32215,0.013572,56.302,0.32103,0.94555,0.053584,-54.159,-0.030095,-0.046365,0.99847,-11.32
+> view matrix models
+> #14.7,0.94659,-0.32215,0.013572,57.085,0.32103,0.94555,0.053584,-53.361,-0.030095,-0.046365,0.99847,-9.071
+> view matrix models
+> #14.7,0.94659,-0.32215,0.013572,57.175,0.32103,0.94555,0.053584,-53.461,-0.030095,-0.046365,0.99847,-9.1908
+> select subtract #14.7
+Nothing selected
+> select add #14.8
+models selected
+> view matrix models
+> #14.8,0.94659,-0.32215,0.013572,23.946,0.32103,0.94555,0.053584,-89.429,-0.030095,-0.046365,0.99847,-20.167
+> view matrix models
+> #14.8,0.94659,-0.32215,0.013572,33.753,0.32103,0.94555,0.053584,-35.158,-0.030095,-0.046365,0.99847,-19.92
+> view matrix models
+> #14.8,0.94659,-0.32215,0.013572,51.825,0.32103,0.94555,0.053584,-54.007,-0.030095,-0.046365,0.99847,-63.53
+> view matrix models
+> #14.8,0.94659,-0.32215,0.013572,54.812,0.32103,0.94555,0.053584,-55.518,-0.030095,-0.046365,0.99847,-62.421
+> view matrix models
+> #14.8,0.94659,-0.32215,0.013572,55.234,0.32103,0.94555,0.053584,-54.177,-0.030095,-0.046365,0.99847,-64.084
+> view matrix models
+> #14.8,0.94659,-0.32215,0.013572,55.366,0.32103,0.94555,0.053584,-54.019,-0.030095,-0.046365,0.99847,-62.428
+> view matrix models
+> #14.8,0.94659,-0.32215,0.013572,55.385,0.32103,0.94555,0.053584,-54.038,-0.030095,-0.046365,0.99847,-62.482
+> select subtract #14.8
+Nothing selected
+> select add #14.9
+models selected
+> view matrix models #14.9,1,0,0,-107.55,0,1,0,43.309,0,0,1,-138.82
+> view matrix models #14.9,1,0,0,-100.85,0,1,0,57.575,0,0,1,-185.4
+> view matrix models #14.9,1,0,0,-19.946,0,1,0,32.714,0,0,1,-137.04
+> view matrix models #14.9,1,0,0,-3.8439,0,1,0,46.303,0,0,1,-93.136
+> view matrix models #14.9,1,0,0,-16.088,0,1,0,28.604,0,0,1,-75.685
+> view matrix models #14.9,1,0,0,-19.631,0,1,0,25.651,0,0,1,-81.131
+> fitmap #14.9 inMap #14.8
+Fit map S126_glycan.mrc in map S126_glycan.mrc using 24 points
+correlation = 1, correlation about mean = 0.9999, overlap = 19.7
+steps = 96, shift = 2.12, angle = 19.1 degrees
+Position of S126_glycan.mrc (#14.9) relative to S126_glycan.mrc (#14.8)
+coordinates:
+Matrix rotation and translation
+.99999870 -0.00104013 -0.00121482 0.51449870
+.00103820 0.99999801 -0.00166543 0.15219113
+.00121654 0.00166421 0.99999787 -0.64748974
+Axis 0.72115570 -0.52660193 0.45013871
+Axis point 0.00000000 389.03419250 90.75108908
+Rotation angle (degrees) 0.13226987
+Shift along axis -0.00057067
+> view matrix models
+> #14.9,0.94627,-0.32311,0.012959,48.122,0.32208,0.94531,0.051619,-57.464,-0.028929,-0.044672,0.99858,-116.7
+> view matrix models
+> #14.9,0.94627,-0.32311,0.012959,48.647,0.32208,0.94531,0.051619,-54.042,-0.028929,-0.044672,0.99858,-122.86
+> view matrix models
+> #14.9,0.94627,-0.32311,0.012959,53.931,0.32208,0.94531,0.051619,-54.479,-0.028929,-0.044672,0.99858,-117.39
+> view matrix models
+> #14.9,0.94627,-0.32311,0.012959,53.996,0.32208,0.94531,0.051619,-54.642,-0.028929,-0.044672,0.99858,-117.59
+> select subtract #14.9
+Nothing selected
+> select add #14.10
+models selected
+> select add #14.11
+models selected
+> select add #14.12
+models selected
+> select add #14.13
+models selected
+> select add #14.14
+models selected
+> view matrix models
+> #14.10,1,0,0,-141.54,0,1,0,-11.522,0,0,1,7.221,#14.11,1,0,0,-141.54,0,1,0,-11.522,0,0,1,7.221,#14.12,1,0,0,-141.54,0,1,0,-11.522,0,0,1,7.221,#14.13,1,0,0,-141.54,0,1,0,-11.522,0,0,1,7.221,#14.14,1,0,0,-141.54,0,1,0,-11.522,0,0,1,7.221
+> view matrix models
+> #14.10,1,0,0,-136.14,0,1,0,48.899,0,0,1,-66.308,#14.11,1,0,0,-136.14,0,1,0,48.899,0,0,1,-66.308,#14.12,1,0,0,-136.14,0,1,0,48.899,0,0,1,-66.308,#14.13,1,0,0,-136.14,0,1,0,48.899,0,0,1,-66.308,#14.14,1,0,0,-136.14,0,1,0,48.899,0,0,1,-66.308
+> view matrix models
+> #14.10,1,0,0,-46.226,0,1,0,75.942,0,0,1,-2.2175,#14.11,1,0,0,-46.226,0,1,0,75.942,0,0,1,-2.2175,#14.12,1,0,0,-46.226,0,1,0,75.942,0,0,1,-2.2175,#14.13,1,0,0,-46.226,0,1,0,75.942,0,0,1,-2.2175,#14.14,1,0,0,-46.226,0,1,0,75.942,0,0,1,-2.2175
+> view matrix models
+> #14.10,1,0,0,-46.636,0,1,0,43.079,0,0,1,8.5588,#14.11,1,0,0,-46.636,0,1,0,43.079,0,0,1,8.5588,#14.12,1,0,0,-46.636,0,1,0,43.079,0,0,1,8.5588,#14.13,1,0,0,-46.636,0,1,0,43.079,0,0,1,8.5588,#14.14,1,0,0,-46.636,0,1,0,43.079,0,0,1,8.5588
+> view matrix models
+> #14.10,1,0,0,-47.447,0,1,0,39.625,0,0,1,3.1947,#14.11,1,0,0,-47.447,0,1,0,39.625,0,0,1,3.1947,#14.12,1,0,0,-47.447,0,1,0,39.625,0,0,1,3.1947,#14.13,1,0,0,-47.447,0,1,0,39.625,0,0,1,3.1947,#14.14,1,0,0,-47.447,0,1,0,39.625,0,0,1,3.1947
+> fitmap #14.10 inMap #6
+Fit map S126_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 24 points
+correlation = 0.9584, correlation about mean = 0.5302, overlap = 11.81
+steps = 76, shift = 0.58, angle = 47.4 degrees
+Position of S126_glycan.mrc (#14.10) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.66113036 0.74732281 0.06644741 -134.85703824
+-0.74213500 0.66439863 -0.08837473 310.50808692
+-0.11019202 0.00911427 0.99386853 30.61683993
+Axis 0.06486034 0.11751986 -0.99095016
+Axis point 279.91168840 307.15273815 0.00000000
+Rotation angle (degrees) 48.72309748
+Shift along axis -2.59577023
+> fitmap #14.11 inMap #6
+Fit map S126_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 24 points
+correlation = 0.9584, correlation about mean = 0.5302, overlap = 11.81
+steps = 76, shift = 0.58, angle = 47.4 degrees
+Position of S126_glycan.mrc (#14.11) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.66113036 0.74732281 0.06644741 -134.85703824
+-0.74213500 0.66439863 -0.08837473 310.50808692
+-0.11019202 0.00911427 0.99386853 30.61683993
+Axis 0.06486034 0.11751986 -0.99095016
+Axis point 279.91168840 307.15273815 0.00000000
+Rotation angle (degrees) 48.72309748
+Shift along axis -2.59577023
+> fitmap #14.12 inMap #6
+Fit map S126_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 24 points
+correlation = 0.9584, correlation about mean = 0.5302, overlap = 11.81
+steps = 76, shift = 0.58, angle = 47.4 degrees
+Position of S126_glycan.mrc (#14.12) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.66113036 0.74732281 0.06644741 -134.85703824
+-0.74213500 0.66439863 -0.08837473 310.50808692
+-0.11019202 0.00911427 0.99386853 30.61683993
+Axis 0.06486034 0.11751986 -0.99095016
+Axis point 279.91168840 307.15273815 0.00000000
+Rotation angle (degrees) 48.72309748
+Shift along axis -2.59577023
+> fitmap #14.13 inMap #6
+Fit map S126_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 24 points
+correlation = 0.9584, correlation about mean = 0.5302, overlap = 11.81
+steps = 76, shift = 0.58, angle = 47.4 degrees
+Position of S126_glycan.mrc (#14.13) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.66113036 0.74732281 0.06644741 -134.85703824
+-0.74213500 0.66439863 -0.08837473 310.50808692
+-0.11019202 0.00911427 0.99386853 30.61683993
+Axis 0.06486034 0.11751986 -0.99095016
+Axis point 279.91168840 307.15273815 0.00000000
+Rotation angle (degrees) 48.72309748
+Shift along axis -2.59577023
+> fitmap #14.14 inMap #6
+Fit map S126_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 24 points
+correlation = 0.9584, correlation about mean = 0.5302, overlap = 11.81
+steps = 76, shift = 0.58, angle = 47.4 degrees
+Position of S126_glycan.mrc (#14.14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.66113036 0.74732281 0.06644741 -134.85703824
+-0.74213500 0.66439863 -0.08837473 310.50808692
+-0.11019202 0.00911427 0.99386853 30.61683993
+Axis 0.06486034 0.11751986 -0.99095016
+Axis point 279.91168840 307.15273815 0.00000000
+Rotation angle (degrees) 48.72309748
+Shift along axis -2.59577023
+> select subtract #14.11
+models selected
+> select subtract #14.12
+models selected
+> select subtract #14.13
+models selected
+> select subtract #14.14
+models selected
+> select subtract #14.10
+Nothing selected
+> select add #14.11
+models selected
+> view matrix models
+> #14.11,0.67811,0.73043,0.081465,-144.34,-0.72653,0.68294,-0.075762,290.19,-0.11098,-0.0078125,0.99379,-19.621
+> view matrix models
+> #14.11,0.67811,0.73043,0.081465,-144.26,-0.72653,0.68294,-0.075762,294.04,-0.11098,-0.0078125,0.99379,-25.648
+> view matrix models
+> #14.11,0.67811,0.73043,0.081465,-143.49,-0.72653,0.68294,-0.075762,294.48,-0.11098,-0.0078125,0.99379,-20.32
+> view matrix models
+> #14.11,0.67811,0.73043,0.081465,-143.04,-0.72653,0.68294,-0.075762,297.97,-0.11098,-0.0078125,0.99379,-21.348
+> view matrix models
+> #14.11,0.67811,0.73043,0.081465,-141.57,-0.72653,0.68294,-0.075762,298.12,-0.11098,-0.0078125,0.99379,-20.355
+> view matrix models
+> #14.11,0.67811,0.73043,0.081465,-141.03,-0.72653,0.68294,-0.075762,298.5,-0.11098,-0.0078125,0.99379,-19.196
+> view matrix models
+> #14.11,0.67811,0.73043,0.081465,-141.21,-0.72653,0.68294,-0.075762,300,-0.11098,-0.0078125,0.99379,-21.807
+> view matrix models
+> #14.11,0.67811,0.73043,0.081465,-141.63,-0.72653,0.68294,-0.075762,300.26,-0.11098,-0.0078125,0.99379,-20.376
+> view matrix models
+> #14.11,0.67811,0.73043,0.081465,-141.9,-0.72653,0.68294,-0.075762,300.73,-0.11098,-0.0078125,0.99379,-20.806
+> view matrix models
+> #14.11,0.67811,0.73043,0.081465,-142.11,-0.72653,0.68294,-0.075762,300.86,-0.11098,-0.0078125,0.99379,-20.663
+> select subtract #14.11
+Nothing selected
+> select add #14.12
+models selected
+> select add #14.13
+models selected
+> select add #14.14
+models selected
+> select add #14.15
+models selected
+> select subtract #14.15
+models selected
+> view matrix models
+> #14.12,0.67811,0.73043,0.081465,-143.14,-0.72653,0.68294,-0.075762,310.71,-0.11098,-0.0078125,0.99379,-72.038,#14.13,0.67811,0.73043,0.081465,-143.14,-0.72653,0.68294,-0.075762,310.71,-0.11098,-0.0078125,0.99379,-72.038,#14.14,0.67811,0.73043,0.081465,-143.14,-0.72653,0.68294,-0.075762,310.71,-0.11098,-0.0078125,0.99379,-72.038
+> view matrix models
+> #14.12,0.67811,0.73043,0.081465,-140.12,-0.72653,0.68294,-0.075762,300.64,-0.11098,-0.0078125,0.99379,-74.056,#14.13,0.67811,0.73043,0.081465,-140.12,-0.72653,0.68294,-0.075762,300.64,-0.11098,-0.0078125,0.99379,-74.056,#14.14,0.67811,0.73043,0.081465,-140.12,-0.72653,0.68294,-0.075762,300.64,-0.11098,-0.0078125,0.99379,-74.056
+> view matrix models
+> #14.12,0.67811,0.73043,0.081465,-143.67,-0.72653,0.68294,-0.075762,301.47,-0.11098,-0.0078125,0.99379,-73.699,#14.13,0.67811,0.73043,0.081465,-143.67,-0.72653,0.68294,-0.075762,301.47,-0.11098,-0.0078125,0.99379,-73.699,#14.14,0.67811,0.73043,0.081465,-143.67,-0.72653,0.68294,-0.075762,301.47,-0.11098,-0.0078125,0.99379,-73.699
+> view matrix models
+> #14.12,0.67811,0.73043,0.081465,-143.93,-0.72653,0.68294,-0.075762,301.14,-0.11098,-0.0078125,0.99379,-73.834,#14.13,0.67811,0.73043,0.081465,-143.93,-0.72653,0.68294,-0.075762,301.14,-0.11098,-0.0078125,0.99379,-73.834,#14.14,0.67811,0.73043,0.081465,-143.93,-0.72653,0.68294,-0.075762,301.14,-0.11098,-0.0078125,0.99379,-73.834
+> view matrix models
+> #14.12,0.67811,0.73043,0.081465,-144.04,-0.72653,0.68294,-0.075762,300.92,-0.11098,-0.0078125,0.99379,-73.889,#14.13,0.67811,0.73043,0.081465,-144.04,-0.72653,0.68294,-0.075762,300.92,-0.11098,-0.0078125,0.99379,-73.889,#14.14,0.67811,0.73043,0.081465,-144.04,-0.72653,0.68294,-0.075762,300.92,-0.11098,-0.0078125,0.99379,-73.889
+> select subtract #14.12
+models selected
+> view matrix models
+> #14.13,0.67811,0.73043,0.081465,-144.6,-0.72653,0.68294,-0.075762,306.45,-0.11098,-0.0078125,0.99379,-126.16,#14.14,0.67811,0.73043,0.081465,-144.6,-0.72653,0.68294,-0.075762,306.45,-0.11098,-0.0078125,0.99379,-126.16
+> view matrix models
+> #14.13,0.67811,0.73043,0.081465,-147.43,-0.72653,0.68294,-0.075762,300.17,-0.11098,-0.0078125,0.99379,-130.84,#14.14,0.67811,0.73043,0.081465,-147.43,-0.72653,0.68294,-0.075762,300.17,-0.11098,-0.0078125,0.99379,-130.84
+> view matrix models
+> #14.13,0.67811,0.73043,0.081465,-146.29,-0.72653,0.68294,-0.075762,300.37,-0.11098,-0.0078125,0.99379,-127.68,#14.14,0.67811,0.73043,0.081465,-146.29,-0.72653,0.68294,-0.075762,300.37,-0.11098,-0.0078125,0.99379,-127.68
+> view matrix models
+> #14.13,0.67811,0.73043,0.081465,-147.17,-0.72653,0.68294,-0.075762,299,-0.11098,-0.0078125,0.99379,-127.69,#14.14,0.67811,0.73043,0.081465,-147.17,-0.72653,0.68294,-0.075762,299,-0.11098,-0.0078125,0.99379,-127.69
+> view matrix models
+> #14.13,0.67811,0.73043,0.081465,-146.85,-0.72653,0.68294,-0.075762,299.43,-0.11098,-0.0078125,0.99379,-127.56,#14.14,0.67811,0.73043,0.081465,-146.85,-0.72653,0.68294,-0.075762,299.43,-0.11098,-0.0078125,0.99379,-127.56
+> view matrix models
+> #14.13,0.67811,0.73043,0.081465,-147.06,-0.72653,0.68294,-0.075762,299.04,-0.11098,-0.0078125,0.99379,-126.47,#14.14,0.67811,0.73043,0.081465,-147.06,-0.72653,0.68294,-0.075762,299.04,-0.11098,-0.0078125,0.99379,-126.47
+> view matrix models
+> #14.13,0.67811,0.73043,0.081465,-146.74,-0.72653,0.68294,-0.075762,299.28,-0.11098,-0.0078125,0.99379,-126.4,#14.14,0.67811,0.73043,0.081465,-146.74,-0.72653,0.68294,-0.075762,299.28,-0.11098,-0.0078125,0.99379,-126.4
+> view matrix models
+> #14.13,0.67811,0.73043,0.081465,-146.86,-0.72653,0.68294,-0.075762,299.02,-0.11098,-0.0078125,0.99379,-127.27,#14.14,0.67811,0.73043,0.081465,-146.86,-0.72653,0.68294,-0.075762,299.02,-0.11098,-0.0078125,0.99379,-127.27
+> view matrix models
+> #14.13,0.67811,0.73043,0.081465,-146.96,-0.72653,0.68294,-0.075762,298.83,-0.11098,-0.0078125,0.99379,-126.59,#14.14,0.67811,0.73043,0.081465,-146.96,-0.72653,0.68294,-0.075762,298.83,-0.11098,-0.0078125,0.99379,-126.59
+> view matrix models
+> #14.13,0.67811,0.73043,0.081465,-147.08,-0.72653,0.68294,-0.075762,298.47,-0.11098,-0.0078125,0.99379,-126.24,#14.14,0.67811,0.73043,0.081465,-147.08,-0.72653,0.68294,-0.075762,298.47,-0.11098,-0.0078125,0.99379,-126.24
+> view matrix models
+> #14.13,0.67811,0.73043,0.081465,-146.88,-0.72653,0.68294,-0.075762,298.21,-0.11098,-0.0078125,0.99379,-126.55,#14.14,0.67811,0.73043,0.081465,-146.88,-0.72653,0.68294,-0.075762,298.21,-0.11098,-0.0078125,0.99379,-126.55
+> select subtract #14.13
+models selected
+> view matrix models
+> #14.14,0.67811,0.73043,0.081465,-142.51,-0.72653,0.68294,-0.075762,293.01,-0.11098,-0.0078125,0.99379,87.494
+> view matrix models
+> #14.14,0.67811,0.73043,0.081465,-142.22,-0.72653,0.68294,-0.075762,298.63,-0.11098,-0.0078125,0.99379,83.763
+> view matrix models
+> #14.14,0.67811,0.73043,0.081465,-138.53,-0.72653,0.68294,-0.075762,296.92,-0.11098,-0.0078125,0.99379,87.598
+> view matrix models
+> #14.14,0.67811,0.73043,0.081465,-139.75,-0.72653,0.68294,-0.075762,298.12,-0.11098,-0.0078125,0.99379,88.366
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14.14,0.66934,0.74039,0.061744,-134.91,-0.73578,0.6721,-0.083113,304.4,-0.10303,0.010201,0.99463,82.498
+> view matrix models
+> #14.14,0.40642,0.8757,0.26071,-147.06,-0.86593,0.4602,-0.19588,407.28,-0.29151,-0.14615,0.94534,172.72
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14.14,0.40642,0.8757,0.26071,-145.56,-0.86593,0.4602,-0.19588,409.62,-0.29151,-0.14615,0.94534,171.06
+> view matrix models
+> #14.14,0.40642,0.8757,0.26071,-146.75,-0.86593,0.4602,-0.19588,409.63,-0.29151,-0.14615,0.94534,170.92
+> view matrix models
+> #14.14,0.40642,0.8757,0.26071,-146.71,-0.86593,0.4602,-0.19588,409.68,-0.29151,-0.14615,0.94534,170.5
+> select subtract #14.14
+Nothing selected
+> select add #14.14
+models selected
+> select subtract #14.14
+Nothing selected
+> select add #14.15
+models selected
+> select add #14.16
+models selected
+> select add #14.17
+models selected
+> select add #14.18
+models selected
+> select add #14.19
+models selected
+> select add #14.20
+models selected
+> select add #14.21
+models selected
+> select add #14.22
+models selected
+> select add #14.23
+models selected
+> view matrix models
+> #14.15,1,0,0,-68.925,0,1,0,104.74,0,0,1,57.117,#14.16,1,0,0,-68.925,0,1,0,104.74,0,0,1,57.117,#14.17,1,0,0,-68.925,0,1,0,104.74,0,0,1,57.117,#14.18,1,0,0,-68.925,0,1,0,104.74,0,0,1,57.117,#14.19,1,0,0,-68.925,0,1,0,104.74,0,0,1,57.117,#14.20,1,0,0,-68.925,0,1,0,104.74,0,0,1,57.117,#14.21,1,0,0,-68.925,0,1,0,104.74,0,0,1,57.117,#14.22,1,0,0,-68.925,0,1,0,104.74,0,0,1,57.117,#14.23,1,0,0,-68.925,0,1,0,104.74,0,0,1,57.117
+> view matrix models
+> #14.15,1,0,0,-96.837,0,1,0,102.08,0,0,1,27.142,#14.16,1,0,0,-96.837,0,1,0,102.08,0,0,1,27.142,#14.17,1,0,0,-96.837,0,1,0,102.08,0,0,1,27.142,#14.18,1,0,0,-96.837,0,1,0,102.08,0,0,1,27.142,#14.19,1,0,0,-96.837,0,1,0,102.08,0,0,1,27.142,#14.20,1,0,0,-96.837,0,1,0,102.08,0,0,1,27.142,#14.21,1,0,0,-96.837,0,1,0,102.08,0,0,1,27.142,#14.22,1,0,0,-96.837,0,1,0,102.08,0,0,1,27.142,#14.23,1,0,0,-96.837,0,1,0,102.08,0,0,1,27.142
+> view matrix models
+> #14.15,1,0,0,-65.181,0,1,0,53.821,0,0,1,29.579,#14.16,1,0,0,-65.181,0,1,0,53.821,0,0,1,29.579,#14.17,1,0,0,-65.181,0,1,0,53.821,0,0,1,29.579,#14.18,1,0,0,-65.181,0,1,0,53.821,0,0,1,29.579,#14.19,1,0,0,-65.181,0,1,0,53.821,0,0,1,29.579,#14.20,1,0,0,-65.181,0,1,0,53.821,0,0,1,29.579,#14.21,1,0,0,-65.181,0,1,0,53.821,0,0,1,29.579,#14.22,1,0,0,-65.181,0,1,0,53.821,0,0,1,29.579,#14.23,1,0,0,-65.181,0,1,0,53.821,0,0,1,29.579
+> view matrix models
+> #14.15,1,0,0,-77.629,0,1,0,33.838,0,0,1,28.75,#14.16,1,0,0,-77.629,0,1,0,33.838,0,0,1,28.75,#14.17,1,0,0,-77.629,0,1,0,33.838,0,0,1,28.75,#14.18,1,0,0,-77.629,0,1,0,33.838,0,0,1,28.75,#14.19,1,0,0,-77.629,0,1,0,33.838,0,0,1,28.75,#14.20,1,0,0,-77.629,0,1,0,33.838,0,0,1,28.75,#14.21,1,0,0,-77.629,0,1,0,33.838,0,0,1,28.75,#14.22,1,0,0,-77.629,0,1,0,33.838,0,0,1,28.75,#14.23,1,0,0,-77.629,0,1,0,33.838,0,0,1,28.75
+> view matrix models
+> #14.15,1,0,0,-78.116,0,1,0,35.862,0,0,1,27.659,#14.16,1,0,0,-78.116,0,1,0,35.862,0,0,1,27.659,#14.17,1,0,0,-78.116,0,1,0,35.862,0,0,1,27.659,#14.18,1,0,0,-78.116,0,1,0,35.862,0,0,1,27.659,#14.19,1,0,0,-78.116,0,1,0,35.862,0,0,1,27.659,#14.20,1,0,0,-78.116,0,1,0,35.862,0,0,1,27.659,#14.21,1,0,0,-78.116,0,1,0,35.862,0,0,1,27.659,#14.22,1,0,0,-78.116,0,1,0,35.862,0,0,1,27.659,#14.23,1,0,0,-78.116,0,1,0,35.862,0,0,1,27.659
+> view matrix models
+> #14.15,1,0,0,-78.075,0,1,0,35.383,0,0,1,32.102,#14.16,1,0,0,-78.075,0,1,0,35.383,0,0,1,32.102,#14.17,1,0,0,-78.075,0,1,0,35.383,0,0,1,32.102,#14.18,1,0,0,-78.075,0,1,0,35.383,0,0,1,32.102,#14.19,1,0,0,-78.075,0,1,0,35.383,0,0,1,32.102,#14.20,1,0,0,-78.075,0,1,0,35.383,0,0,1,32.102,#14.21,1,0,0,-78.075,0,1,0,35.383,0,0,1,32.102,#14.22,1,0,0,-78.075,0,1,0,35.383,0,0,1,32.102,#14.23,1,0,0,-78.075,0,1,0,35.383,0,0,1,32.102
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14.15,0.78671,-0.26234,0.5588,-106.97,-0.023509,0.89182,0.45178,-45.776,-0.61687,-0.36856,0.69544,332.37,#14.16,0.78671,-0.26234,0.5588,-106.97,-0.023509,0.89182,0.45178,-45.776,-0.61687,-0.36856,0.69544,332.37,#14.17,0.78671,-0.26234,0.5588,-106.97,-0.023509,0.89182,0.45178,-45.776,-0.61687,-0.36856,0.69544,332.37,#14.18,0.78671,-0.26234,0.5588,-106.97,-0.023509,0.89182,0.45178,-45.776,-0.61687,-0.36856,0.69544,332.37,#14.19,0.78671,-0.26234,0.5588,-106.97,-0.023509,0.89182,0.45178,-45.776,-0.61687,-0.36856,0.69544,332.37,#14.20,0.78671,-0.26234,0.5588,-106.97,-0.023509,0.89182,0.45178,-45.776,-0.61687,-0.36856,0.69544,332.37,#14.21,0.78671,-0.26234,0.5588,-106.97,-0.023509,0.89182,0.45178,-45.776,-0.61687,-0.36856,0.69544,332.37,#14.22,0.78671,-0.26234,0.5588,-106.97,-0.023509,0.89182,0.45178,-45.776,-0.61687,-0.36856,0.69544,332.37,#14.23,0.78671,-0.26234,0.5588,-106.97,-0.023509,0.89182,0.45178,-45.776,-0.61687,-0.36856,0.69544,332.37
+> view matrix models
+> #14.15,0.60873,-0.22157,0.76181,-121.19,0.14191,0.97513,0.17022,-35.202,-0.78058,0.0044874,0.62504,311.97,#14.16,0.60873,-0.22157,0.76181,-121.19,0.14191,0.97513,0.17022,-35.202,-0.78058,0.0044874,0.62504,311.97,#14.17,0.60873,-0.22157,0.76181,-121.19,0.14191,0.97513,0.17022,-35.202,-0.78058,0.0044874,0.62504,311.97,#14.18,0.60873,-0.22157,0.76181,-121.19,0.14191,0.97513,0.17022,-35.202,-0.78058,0.0044874,0.62504,311.97,#14.19,0.60873,-0.22157,0.76181,-121.19,0.14191,0.97513,0.17022,-35.202,-0.78058,0.0044874,0.62504,311.97,#14.20,0.60873,-0.22157,0.76181,-121.19,0.14191,0.97513,0.17022,-35.202,-0.78058,0.0044874,0.62504,311.97,#14.21,0.60873,-0.22157,0.76181,-121.19,0.14191,0.97513,0.17022,-35.202,-0.78058,0.0044874,0.62504,311.97,#14.22,0.60873,-0.22157,0.76181,-121.19,0.14191,0.97513,0.17022,-35.202,-0.78058,0.0044874,0.62504,311.97,#14.23,0.60873,-0.22157,0.76181,-121.19,0.14191,0.97513,0.17022,-35.202,-0.78058,0.0044874,0.62504,311.97
+> view matrix models
+> #14.15,0.50319,-0.24916,0.82748,-105.66,0.084408,0.96713,0.23988,-36.394,-0.86004,-0.050861,0.50768,371.18,#14.16,0.50319,-0.24916,0.82748,-105.66,0.084408,0.96713,0.23988,-36.394,-0.86004,-0.050861,0.50768,371.18,#14.17,0.50319,-0.24916,0.82748,-105.66,0.084408,0.96713,0.23988,-36.394,-0.86004,-0.050861,0.50768,371.18,#14.18,0.50319,-0.24916,0.82748,-105.66,0.084408,0.96713,0.23988,-36.394,-0.86004,-0.050861,0.50768,371.18,#14.19,0.50319,-0.24916,0.82748,-105.66,0.084408,0.96713,0.23988,-36.394,-0.86004,-0.050861,0.50768,371.18,#14.20,0.50319,-0.24916,0.82748,-105.66,0.084408,0.96713,0.23988,-36.394,-0.86004,-0.050861,0.50768,371.18,#14.21,0.50319,-0.24916,0.82748,-105.66,0.084408,0.96713,0.23988,-36.394,-0.86004,-0.050861,0.50768,371.18,#14.22,0.50319,-0.24916,0.82748,-105.66,0.084408,0.96713,0.23988,-36.394,-0.86004,-0.050861,0.50768,371.18,#14.23,0.50319,-0.24916,0.82748,-105.66,0.084408,0.96713,0.23988,-36.394,-0.86004,-0.050861,0.50768,371.18
+> view matrix models
+> #14.15,0.44234,0.28786,0.8494,-207.42,-0.21986,0.953,-0.20847,149.1,-0.86948,-0.094539,0.48483,388.05,#14.16,0.44234,0.28786,0.8494,-207.42,-0.21986,0.953,-0.20847,149.1,-0.86948,-0.094539,0.48483,388.05,#14.17,0.44234,0.28786,0.8494,-207.42,-0.21986,0.953,-0.20847,149.1,-0.86948,-0.094539,0.48483,388.05,#14.18,0.44234,0.28786,0.8494,-207.42,-0.21986,0.953,-0.20847,149.1,-0.86948,-0.094539,0.48483,388.05,#14.19,0.44234,0.28786,0.8494,-207.42,-0.21986,0.953,-0.20847,149.1,-0.86948,-0.094539,0.48483,388.05,#14.20,0.44234,0.28786,0.8494,-207.42,-0.21986,0.953,-0.20847,149.1,-0.86948,-0.094539,0.48483,388.05,#14.21,0.44234,0.28786,0.8494,-207.42,-0.21986,0.953,-0.20847,149.1,-0.86948,-0.094539,0.48483,388.05,#14.22,0.44234,0.28786,0.8494,-207.42,-0.21986,0.953,-0.20847,149.1,-0.86948,-0.094539,0.48483,388.05,#14.23,0.44234,0.28786,0.8494,-207.42,-0.21986,0.953,-0.20847,149.1,-0.86948,-0.094539,0.48483,388.05
+> view matrix models
+> #14.15,0.81388,0.075735,0.57607,-187.82,0.0016559,0.99116,-0.13265,68.902,-0.58103,0.10891,0.80656,197.82,#14.16,0.81388,0.075735,0.57607,-187.82,0.0016559,0.99116,-0.13265,68.902,-0.58103,0.10891,0.80656,197.82,#14.17,0.81388,0.075735,0.57607,-187.82,0.0016559,0.99116,-0.13265,68.902,-0.58103,0.10891,0.80656,197.82,#14.18,0.81388,0.075735,0.57607,-187.82,0.0016559,0.99116,-0.13265,68.902,-0.58103,0.10891,0.80656,197.82,#14.19,0.81388,0.075735,0.57607,-187.82,0.0016559,0.99116,-0.13265,68.902,-0.58103,0.10891,0.80656,197.82,#14.20,0.81388,0.075735,0.57607,-187.82,0.0016559,0.99116,-0.13265,68.902,-0.58103,0.10891,0.80656,197.82,#14.21,0.81388,0.075735,0.57607,-187.82,0.0016559,0.99116,-0.13265,68.902,-0.58103,0.10891,0.80656,197.82,#14.22,0.81388,0.075735,0.57607,-187.82,0.0016559,0.99116,-0.13265,68.902,-0.58103,0.10891,0.80656,197.82,#14.23,0.81388,0.075735,0.57607,-187.82,0.0016559,0.99116,-0.13265,68.902,-0.58103,0.10891,0.80656,197.82
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14.15,0.81388,0.075735,0.57607,-188.22,0.0016559,0.99116,-0.13265,68.436,-0.58103,0.10891,0.80656,197.75,#14.16,0.81388,0.075735,0.57607,-188.22,0.0016559,0.99116,-0.13265,68.436,-0.58103,0.10891,0.80656,197.75,#14.17,0.81388,0.075735,0.57607,-188.22,0.0016559,0.99116,-0.13265,68.436,-0.58103,0.10891,0.80656,197.75,#14.18,0.81388,0.075735,0.57607,-188.22,0.0016559,0.99116,-0.13265,68.436,-0.58103,0.10891,0.80656,197.75,#14.19,0.81388,0.075735,0.57607,-188.22,0.0016559,0.99116,-0.13265,68.436,-0.58103,0.10891,0.80656,197.75,#14.20,0.81388,0.075735,0.57607,-188.22,0.0016559,0.99116,-0.13265,68.436,-0.58103,0.10891,0.80656,197.75,#14.21,0.81388,0.075735,0.57607,-188.22,0.0016559,0.99116,-0.13265,68.436,-0.58103,0.10891,0.80656,197.75,#14.22,0.81388,0.075735,0.57607,-188.22,0.0016559,0.99116,-0.13265,68.436,-0.58103,0.10891,0.80656,197.75,#14.23,0.81388,0.075735,0.57607,-188.22,0.0016559,0.99116,-0.13265,68.436,-0.58103,0.10891,0.80656,197.75
+> view matrix models
+> #14.15,0.81388,0.075735,0.57607,-186.98,0.0016559,0.99116,-0.13265,67.443,-0.58103,0.10891,0.80656,197.03,#14.16,0.81388,0.075735,0.57607,-186.98,0.0016559,0.99116,-0.13265,67.443,-0.58103,0.10891,0.80656,197.03,#14.17,0.81388,0.075735,0.57607,-186.98,0.0016559,0.99116,-0.13265,67.443,-0.58103,0.10891,0.80656,197.03,#14.18,0.81388,0.075735,0.57607,-186.98,0.0016559,0.99116,-0.13265,67.443,-0.58103,0.10891,0.80656,197.03,#14.19,0.81388,0.075735,0.57607,-186.98,0.0016559,0.99116,-0.13265,67.443,-0.58103,0.10891,0.80656,197.03,#14.20,0.81388,0.075735,0.57607,-186.98,0.0016559,0.99116,-0.13265,67.443,-0.58103,0.10891,0.80656,197.03,#14.21,0.81388,0.075735,0.57607,-186.98,0.0016559,0.99116,-0.13265,67.443,-0.58103,0.10891,0.80656,197.03,#14.22,0.81388,0.075735,0.57607,-186.98,0.0016559,0.99116,-0.13265,67.443,-0.58103,0.10891,0.80656,197.03,#14.23,0.81388,0.075735,0.57607,-186.98,0.0016559,0.99116,-0.13265,67.443,-0.58103,0.10891,0.80656,197.03
+> view matrix models
+> #14.15,0.81388,0.075735,0.57607,-186.51,0.0016559,0.99116,-0.13265,67.636,-0.58103,0.10891,0.80656,198.47,#14.16,0.81388,0.075735,0.57607,-186.51,0.0016559,0.99116,-0.13265,67.636,-0.58103,0.10891,0.80656,198.47,#14.17,0.81388,0.075735,0.57607,-186.51,0.0016559,0.99116,-0.13265,67.636,-0.58103,0.10891,0.80656,198.47,#14.18,0.81388,0.075735,0.57607,-186.51,0.0016559,0.99116,-0.13265,67.636,-0.58103,0.10891,0.80656,198.47,#14.19,0.81388,0.075735,0.57607,-186.51,0.0016559,0.99116,-0.13265,67.636,-0.58103,0.10891,0.80656,198.47,#14.20,0.81388,0.075735,0.57607,-186.51,0.0016559,0.99116,-0.13265,67.636,-0.58103,0.10891,0.80656,198.47,#14.21,0.81388,0.075735,0.57607,-186.51,0.0016559,0.99116,-0.13265,67.636,-0.58103,0.10891,0.80656,198.47,#14.22,0.81388,0.075735,0.57607,-186.51,0.0016559,0.99116,-0.13265,67.636,-0.58103,0.10891,0.80656,198.47,#14.23,0.81388,0.075735,0.57607,-186.51,0.0016559,0.99116,-0.13265,67.636,-0.58103,0.10891,0.80656,198.47
+> view matrix models
+> #14.15,0.81388,0.075735,0.57607,-187.18,0.0016559,0.99116,-0.13265,67.836,-0.58103,0.10891,0.80656,198.61,#14.16,0.81388,0.075735,0.57607,-187.18,0.0016559,0.99116,-0.13265,67.836,-0.58103,0.10891,0.80656,198.61,#14.17,0.81388,0.075735,0.57607,-187.18,0.0016559,0.99116,-0.13265,67.836,-0.58103,0.10891,0.80656,198.61,#14.18,0.81388,0.075735,0.57607,-187.18,0.0016559,0.99116,-0.13265,67.836,-0.58103,0.10891,0.80656,198.61,#14.19,0.81388,0.075735,0.57607,-187.18,0.0016559,0.99116,-0.13265,67.836,-0.58103,0.10891,0.80656,198.61,#14.20,0.81388,0.075735,0.57607,-187.18,0.0016559,0.99116,-0.13265,67.836,-0.58103,0.10891,0.80656,198.61,#14.21,0.81388,0.075735,0.57607,-187.18,0.0016559,0.99116,-0.13265,67.836,-0.58103,0.10891,0.80656,198.61,#14.22,0.81388,0.075735,0.57607,-187.18,0.0016559,0.99116,-0.13265,67.836,-0.58103,0.10891,0.80656,198.61,#14.23,0.81388,0.075735,0.57607,-187.18,0.0016559,0.99116,-0.13265,67.836,-0.58103,0.10891,0.80656,198.61
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14.15,0.80637,0.079242,0.58608,-188.5,-0.0016891,0.99129,-0.1317,68.397,-0.59141,0.10521,0.79948,203.62,#14.16,0.80637,0.079242,0.58608,-188.5,-0.0016891,0.99129,-0.1317,68.397,-0.59141,0.10521,0.79948,203.62,#14.17,0.80637,0.079242,0.58608,-188.5,-0.0016891,0.99129,-0.1317,68.397,-0.59141,0.10521,0.79948,203.62,#14.18,0.80637,0.079242,0.58608,-188.5,-0.0016891,0.99129,-0.1317,68.397,-0.59141,0.10521,0.79948,203.62,#14.19,0.80637,0.079242,0.58608,-188.5,-0.0016891,0.99129,-0.1317,68.397,-0.59141,0.10521,0.79948,203.62,#14.20,0.80637,0.079242,0.58608,-188.5,-0.0016891,0.99129,-0.1317,68.397,-0.59141,0.10521,0.79948,203.62,#14.21,0.80637,0.079242,0.58608,-188.5,-0.0016891,0.99129,-0.1317,68.397,-0.59141,0.10521,0.79948,203.62,#14.22,0.80637,0.079242,0.58608,-188.5,-0.0016891,0.99129,-0.1317,68.397,-0.59141,0.10521,0.79948,203.62,#14.23,0.80637,0.079242,0.58608,-188.5,-0.0016891,0.99129,-0.1317,68.397,-0.59141,0.10521,0.79948,203.62
+> view matrix models
+> #14.15,0.82585,0.1142,0.55221,-192.29,-0.11828,0.99257,-0.028377,71.523,-0.55135,-0.04188,0.83322,216.18,#14.16,0.82585,0.1142,0.55221,-192.29,-0.11828,0.99257,-0.028377,71.523,-0.55135,-0.04188,0.83322,216.18,#14.17,0.82585,0.1142,0.55221,-192.29,-0.11828,0.99257,-0.028377,71.523,-0.55135,-0.04188,0.83322,216.18,#14.18,0.82585,0.1142,0.55221,-192.29,-0.11828,0.99257,-0.028377,71.523,-0.55135,-0.04188,0.83322,216.18,#14.19,0.82585,0.1142,0.55221,-192.29,-0.11828,0.99257,-0.028377,71.523,-0.55135,-0.04188,0.83322,216.18,#14.20,0.82585,0.1142,0.55221,-192.29,-0.11828,0.99257,-0.028377,71.523,-0.55135,-0.04188,0.83322,216.18,#14.21,0.82585,0.1142,0.55221,-192.29,-0.11828,0.99257,-0.028377,71.523,-0.55135,-0.04188,0.83322,216.18,#14.22,0.82585,0.1142,0.55221,-192.29,-0.11828,0.99257,-0.028377,71.523,-0.55135,-0.04188,0.83322,216.18,#14.23,0.82585,0.1142,0.55221,-192.29,-0.11828,0.99257,-0.028377,71.523,-0.55135,-0.04188,0.83322,216.18
+> view matrix models
+> #14.15,0.80837,0.19311,0.5561,-205.33,-0.13995,0.98062,-0.13709,105.58,-0.5718,0.032986,0.81973,208.91,#14.16,0.80837,0.19311,0.5561,-205.33,-0.13995,0.98062,-0.13709,105.58,-0.5718,0.032986,0.81973,208.91,#14.17,0.80837,0.19311,0.5561,-205.33,-0.13995,0.98062,-0.13709,105.58,-0.5718,0.032986,0.81973,208.91,#14.18,0.80837,0.19311,0.5561,-205.33,-0.13995,0.98062,-0.13709,105.58,-0.5718,0.032986,0.81973,208.91,#14.19,0.80837,0.19311,0.5561,-205.33,-0.13995,0.98062,-0.13709,105.58,-0.5718,0.032986,0.81973,208.91,#14.20,0.80837,0.19311,0.5561,-205.33,-0.13995,0.98062,-0.13709,105.58,-0.5718,0.032986,0.81973,208.91,#14.21,0.80837,0.19311,0.5561,-205.33,-0.13995,0.98062,-0.13709,105.58,-0.5718,0.032986,0.81973,208.91,#14.22,0.80837,0.19311,0.5561,-205.33,-0.13995,0.98062,-0.13709,105.58,-0.5718,0.032986,0.81973,208.91,#14.23,0.80837,0.19311,0.5561,-205.33,-0.13995,0.98062,-0.13709,105.58,-0.5718,0.032986,0.81973,208.91
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14.15,0.80837,0.19311,0.5561,-205.4,-0.13995,0.98062,-0.13709,105.54,-0.5718,0.032986,0.81973,208.48,#14.16,0.80837,0.19311,0.5561,-205.4,-0.13995,0.98062,-0.13709,105.54,-0.5718,0.032986,0.81973,208.48,#14.17,0.80837,0.19311,0.5561,-205.4,-0.13995,0.98062,-0.13709,105.54,-0.5718,0.032986,0.81973,208.48,#14.18,0.80837,0.19311,0.5561,-205.4,-0.13995,0.98062,-0.13709,105.54,-0.5718,0.032986,0.81973,208.48,#14.19,0.80837,0.19311,0.5561,-205.4,-0.13995,0.98062,-0.13709,105.54,-0.5718,0.032986,0.81973,208.48,#14.20,0.80837,0.19311,0.5561,-205.4,-0.13995,0.98062,-0.13709,105.54,-0.5718,0.032986,0.81973,208.48,#14.21,0.80837,0.19311,0.5561,-205.4,-0.13995,0.98062,-0.13709,105.54,-0.5718,0.032986,0.81973,208.48,#14.22,0.80837,0.19311,0.5561,-205.4,-0.13995,0.98062,-0.13709,105.54,-0.5718,0.032986,0.81973,208.48,#14.23,0.80837,0.19311,0.5561,-205.4,-0.13995,0.98062,-0.13709,105.54,-0.5718,0.032986,0.81973,208.48
+> select subtract #14.16
+models selected
+> select subtract #14.15
+models selected
+> select add #14.16
+models selected
+> view matrix models
+> #14.16,0.80837,0.19311,0.5561,-203.49,-0.13995,0.98062,-0.13709,96.57,-0.5718,0.032986,0.81973,158.64,#14.17,0.80837,0.19311,0.5561,-203.49,-0.13995,0.98062,-0.13709,96.57,-0.5718,0.032986,0.81973,158.64,#14.18,0.80837,0.19311,0.5561,-203.49,-0.13995,0.98062,-0.13709,96.57,-0.5718,0.032986,0.81973,158.64,#14.19,0.80837,0.19311,0.5561,-203.49,-0.13995,0.98062,-0.13709,96.57,-0.5718,0.032986,0.81973,158.64,#14.20,0.80837,0.19311,0.5561,-203.49,-0.13995,0.98062,-0.13709,96.57,-0.5718,0.032986,0.81973,158.64,#14.21,0.80837,0.19311,0.5561,-203.49,-0.13995,0.98062,-0.13709,96.57,-0.5718,0.032986,0.81973,158.64,#14.22,0.80837,0.19311,0.5561,-203.49,-0.13995,0.98062,-0.13709,96.57,-0.5718,0.032986,0.81973,158.64,#14.23,0.80837,0.19311,0.5561,-203.49,-0.13995,0.98062,-0.13709,96.57,-0.5718,0.032986,0.81973,158.64
+> view matrix models
+> #14.16,0.80837,0.19311,0.5561,-206.5,-0.13995,0.98062,-0.13709,105.1,-0.5718,0.032986,0.81973,152.72,#14.17,0.80837,0.19311,0.5561,-206.5,-0.13995,0.98062,-0.13709,105.1,-0.5718,0.032986,0.81973,152.72,#14.18,0.80837,0.19311,0.5561,-206.5,-0.13995,0.98062,-0.13709,105.1,-0.5718,0.032986,0.81973,152.72,#14.19,0.80837,0.19311,0.5561,-206.5,-0.13995,0.98062,-0.13709,105.1,-0.5718,0.032986,0.81973,152.72,#14.20,0.80837,0.19311,0.5561,-206.5,-0.13995,0.98062,-0.13709,105.1,-0.5718,0.032986,0.81973,152.72,#14.21,0.80837,0.19311,0.5561,-206.5,-0.13995,0.98062,-0.13709,105.1,-0.5718,0.032986,0.81973,152.72,#14.22,0.80837,0.19311,0.5561,-206.5,-0.13995,0.98062,-0.13709,105.1,-0.5718,0.032986,0.81973,152.72,#14.23,0.80837,0.19311,0.5561,-206.5,-0.13995,0.98062,-0.13709,105.1,-0.5718,0.032986,0.81973,152.72
+> view matrix models
+> #14.16,0.80837,0.19311,0.5561,-206.23,-0.13995,0.98062,-0.13709,105.09,-0.5718,0.032986,0.81973,154.82,#14.17,0.80837,0.19311,0.5561,-206.23,-0.13995,0.98062,-0.13709,105.09,-0.5718,0.032986,0.81973,154.82,#14.18,0.80837,0.19311,0.5561,-206.23,-0.13995,0.98062,-0.13709,105.09,-0.5718,0.032986,0.81973,154.82,#14.19,0.80837,0.19311,0.5561,-206.23,-0.13995,0.98062,-0.13709,105.09,-0.5718,0.032986,0.81973,154.82,#14.20,0.80837,0.19311,0.5561,-206.23,-0.13995,0.98062,-0.13709,105.09,-0.5718,0.032986,0.81973,154.82,#14.21,0.80837,0.19311,0.5561,-206.23,-0.13995,0.98062,-0.13709,105.09,-0.5718,0.032986,0.81973,154.82,#14.22,0.80837,0.19311,0.5561,-206.23,-0.13995,0.98062,-0.13709,105.09,-0.5718,0.032986,0.81973,154.82,#14.23,0.80837,0.19311,0.5561,-206.23,-0.13995,0.98062,-0.13709,105.09,-0.5718,0.032986,0.81973,154.82
+> view matrix models
+> #14.16,0.80837,0.19311,0.5561,-206.44,-0.13995,0.98062,-0.13709,104.71,-0.5718,0.032986,0.81973,154.58,#14.17,0.80837,0.19311,0.5561,-206.44,-0.13995,0.98062,-0.13709,104.71,-0.5718,0.032986,0.81973,154.58,#14.18,0.80837,0.19311,0.5561,-206.44,-0.13995,0.98062,-0.13709,104.71,-0.5718,0.032986,0.81973,154.58,#14.19,0.80837,0.19311,0.5561,-206.44,-0.13995,0.98062,-0.13709,104.71,-0.5718,0.032986,0.81973,154.58,#14.20,0.80837,0.19311,0.5561,-206.44,-0.13995,0.98062,-0.13709,104.71,-0.5718,0.032986,0.81973,154.58,#14.21,0.80837,0.19311,0.5561,-206.44,-0.13995,0.98062,-0.13709,104.71,-0.5718,0.032986,0.81973,154.58,#14.22,0.80837,0.19311,0.5561,-206.44,-0.13995,0.98062,-0.13709,104.71,-0.5718,0.032986,0.81973,154.58,#14.23,0.80837,0.19311,0.5561,-206.44,-0.13995,0.98062,-0.13709,104.71,-0.5718,0.032986,0.81973,154.58
+> view matrix models
+> #14.16,0.80837,0.19311,0.5561,-206.13,-0.13995,0.98062,-0.13709,105.2,-0.5718,0.032986,0.81973,154.55,#14.17,0.80837,0.19311,0.5561,-206.13,-0.13995,0.98062,-0.13709,105.2,-0.5718,0.032986,0.81973,154.55,#14.18,0.80837,0.19311,0.5561,-206.13,-0.13995,0.98062,-0.13709,105.2,-0.5718,0.032986,0.81973,154.55,#14.19,0.80837,0.19311,0.5561,-206.13,-0.13995,0.98062,-0.13709,105.2,-0.5718,0.032986,0.81973,154.55,#14.20,0.80837,0.19311,0.5561,-206.13,-0.13995,0.98062,-0.13709,105.2,-0.5718,0.032986,0.81973,154.55,#14.21,0.80837,0.19311,0.5561,-206.13,-0.13995,0.98062,-0.13709,105.2,-0.5718,0.032986,0.81973,154.55,#14.22,0.80837,0.19311,0.5561,-206.13,-0.13995,0.98062,-0.13709,105.2,-0.5718,0.032986,0.81973,154.55,#14.23,0.80837,0.19311,0.5561,-206.13,-0.13995,0.98062,-0.13709,105.2,-0.5718,0.032986,0.81973,154.55
+> select subtract #14.16
+models selected
+> view matrix models
+> #14.17,0.80837,0.19311,0.5561,-203.34,-0.13995,0.98062,-0.13709,99.117,-0.5718,0.032986,0.81973,99.51,#14.18,0.80837,0.19311,0.5561,-203.34,-0.13995,0.98062,-0.13709,99.117,-0.5718,0.032986,0.81973,99.51,#14.19,0.80837,0.19311,0.5561,-203.34,-0.13995,0.98062,-0.13709,99.117,-0.5718,0.032986,0.81973,99.51,#14.20,0.80837,0.19311,0.5561,-203.34,-0.13995,0.98062,-0.13709,99.117,-0.5718,0.032986,0.81973,99.51,#14.21,0.80837,0.19311,0.5561,-203.34,-0.13995,0.98062,-0.13709,99.117,-0.5718,0.032986,0.81973,99.51,#14.22,0.80837,0.19311,0.5561,-203.34,-0.13995,0.98062,-0.13709,99.117,-0.5718,0.032986,0.81973,99.51,#14.23,0.80837,0.19311,0.5561,-203.34,-0.13995,0.98062,-0.13709,99.117,-0.5718,0.032986,0.81973,99.51
+> view matrix models
+> #14.17,0.80837,0.19311,0.5561,-207.75,-0.13995,0.98062,-0.13709,101.02,-0.5718,0.032986,0.81973,101.67,#14.18,0.80837,0.19311,0.5561,-207.75,-0.13995,0.98062,-0.13709,101.02,-0.5718,0.032986,0.81973,101.67,#14.19,0.80837,0.19311,0.5561,-207.75,-0.13995,0.98062,-0.13709,101.02,-0.5718,0.032986,0.81973,101.67,#14.20,0.80837,0.19311,0.5561,-207.75,-0.13995,0.98062,-0.13709,101.02,-0.5718,0.032986,0.81973,101.67,#14.21,0.80837,0.19311,0.5561,-207.75,-0.13995,0.98062,-0.13709,101.02,-0.5718,0.032986,0.81973,101.67,#14.22,0.80837,0.19311,0.5561,-207.75,-0.13995,0.98062,-0.13709,101.02,-0.5718,0.032986,0.81973,101.67,#14.23,0.80837,0.19311,0.5561,-207.75,-0.13995,0.98062,-0.13709,101.02,-0.5718,0.032986,0.81973,101.67
+> view matrix models
+> #14.17,0.80837,0.19311,0.5561,-208.55,-0.13995,0.98062,-0.13709,101.99,-0.5718,0.032986,0.81973,100.46,#14.18,0.80837,0.19311,0.5561,-208.55,-0.13995,0.98062,-0.13709,101.99,-0.5718,0.032986,0.81973,100.46,#14.19,0.80837,0.19311,0.5561,-208.55,-0.13995,0.98062,-0.13709,101.99,-0.5718,0.032986,0.81973,100.46,#14.20,0.80837,0.19311,0.5561,-208.55,-0.13995,0.98062,-0.13709,101.99,-0.5718,0.032986,0.81973,100.46,#14.21,0.80837,0.19311,0.5561,-208.55,-0.13995,0.98062,-0.13709,101.99,-0.5718,0.032986,0.81973,100.46,#14.22,0.80837,0.19311,0.5561,-208.55,-0.13995,0.98062,-0.13709,101.99,-0.5718,0.032986,0.81973,100.46,#14.23,0.80837,0.19311,0.5561,-208.55,-0.13995,0.98062,-0.13709,101.99,-0.5718,0.032986,0.81973,100.46
+> view matrix models
+> #14.17,0.80837,0.19311,0.5561,-207.51,-0.13995,0.98062,-0.13709,103.16,-0.5718,0.032986,0.81973,102.33,#14.18,0.80837,0.19311,0.5561,-207.51,-0.13995,0.98062,-0.13709,103.16,-0.5718,0.032986,0.81973,102.33,#14.19,0.80837,0.19311,0.5561,-207.51,-0.13995,0.98062,-0.13709,103.16,-0.5718,0.032986,0.81973,102.33,#14.20,0.80837,0.19311,0.5561,-207.51,-0.13995,0.98062,-0.13709,103.16,-0.5718,0.032986,0.81973,102.33,#14.21,0.80837,0.19311,0.5561,-207.51,-0.13995,0.98062,-0.13709,103.16,-0.5718,0.032986,0.81973,102.33,#14.22,0.80837,0.19311,0.5561,-207.51,-0.13995,0.98062,-0.13709,103.16,-0.5718,0.032986,0.81973,102.33,#14.23,0.80837,0.19311,0.5561,-207.51,-0.13995,0.98062,-0.13709,103.16,-0.5718,0.032986,0.81973,102.33
+> view matrix models
+> #14.17,0.80837,0.19311,0.5561,-207.45,-0.13995,0.98062,-0.13709,103.5,-0.5718,0.032986,0.81973,102,#14.18,0.80837,0.19311,0.5561,-207.45,-0.13995,0.98062,-0.13709,103.5,-0.5718,0.032986,0.81973,102,#14.19,0.80837,0.19311,0.5561,-207.45,-0.13995,0.98062,-0.13709,103.5,-0.5718,0.032986,0.81973,102,#14.20,0.80837,0.19311,0.5561,-207.45,-0.13995,0.98062,-0.13709,103.5,-0.5718,0.032986,0.81973,102,#14.21,0.80837,0.19311,0.5561,-207.45,-0.13995,0.98062,-0.13709,103.5,-0.5718,0.032986,0.81973,102,#14.22,0.80837,0.19311,0.5561,-207.45,-0.13995,0.98062,-0.13709,103.5,-0.5718,0.032986,0.81973,102,#14.23,0.80837,0.19311,0.5561,-207.45,-0.13995,0.98062,-0.13709,103.5,-0.5718,0.032986,0.81973,102
+> view matrix models
+> #14.17,0.80837,0.19311,0.5561,-207.35,-0.13995,0.98062,-0.13709,103.7,-0.5718,0.032986,0.81973,102.12,#14.18,0.80837,0.19311,0.5561,-207.35,-0.13995,0.98062,-0.13709,103.7,-0.5718,0.032986,0.81973,102.12,#14.19,0.80837,0.19311,0.5561,-207.35,-0.13995,0.98062,-0.13709,103.7,-0.5718,0.032986,0.81973,102.12,#14.20,0.80837,0.19311,0.5561,-207.35,-0.13995,0.98062,-0.13709,103.7,-0.5718,0.032986,0.81973,102.12,#14.21,0.80837,0.19311,0.5561,-207.35,-0.13995,0.98062,-0.13709,103.7,-0.5718,0.032986,0.81973,102.12,#14.22,0.80837,0.19311,0.5561,-207.35,-0.13995,0.98062,-0.13709,103.7,-0.5718,0.032986,0.81973,102.12,#14.23,0.80837,0.19311,0.5561,-207.35,-0.13995,0.98062,-0.13709,103.7,-0.5718,0.032986,0.81973,102.12
+> view matrix models
+> #14.17,0.80837,0.19311,0.5561,-207.34,-0.13995,0.98062,-0.13709,103.75,-0.5718,0.032986,0.81973,102.05,#14.18,0.80837,0.19311,0.5561,-207.34,-0.13995,0.98062,-0.13709,103.75,-0.5718,0.032986,0.81973,102.05,#14.19,0.80837,0.19311,0.5561,-207.34,-0.13995,0.98062,-0.13709,103.75,-0.5718,0.032986,0.81973,102.05,#14.20,0.80837,0.19311,0.5561,-207.34,-0.13995,0.98062,-0.13709,103.75,-0.5718,0.032986,0.81973,102.05,#14.21,0.80837,0.19311,0.5561,-207.34,-0.13995,0.98062,-0.13709,103.75,-0.5718,0.032986,0.81973,102.05,#14.22,0.80837,0.19311,0.5561,-207.34,-0.13995,0.98062,-0.13709,103.75,-0.5718,0.032986,0.81973,102.05,#14.23,0.80837,0.19311,0.5561,-207.34,-0.13995,0.98062,-0.13709,103.75,-0.5718,0.032986,0.81973,102.05
+> select subtract #14.17
+models selected
+> view matrix models
+> #14.18,0.80837,0.19311,0.5561,-204.11,-0.13995,0.98062,-0.13709,90.914,-0.5718,0.032986,0.81973,54.118,#14.19,0.80837,0.19311,0.5561,-204.11,-0.13995,0.98062,-0.13709,90.914,-0.5718,0.032986,0.81973,54.118,#14.20,0.80837,0.19311,0.5561,-204.11,-0.13995,0.98062,-0.13709,90.914,-0.5718,0.032986,0.81973,54.118,#14.21,0.80837,0.19311,0.5561,-204.11,-0.13995,0.98062,-0.13709,90.914,-0.5718,0.032986,0.81973,54.118,#14.22,0.80837,0.19311,0.5561,-204.11,-0.13995,0.98062,-0.13709,90.914,-0.5718,0.032986,0.81973,54.118,#14.23,0.80837,0.19311,0.5561,-204.11,-0.13995,0.98062,-0.13709,90.914,-0.5718,0.032986,0.81973,54.118
+> view matrix models
+> #14.18,0.80837,0.19311,0.5561,-207.28,-0.13995,0.98062,-0.13709,97.924,-0.5718,0.032986,0.81973,40.97,#14.19,0.80837,0.19311,0.5561,-207.28,-0.13995,0.98062,-0.13709,97.924,-0.5718,0.032986,0.81973,40.97,#14.20,0.80837,0.19311,0.5561,-207.28,-0.13995,0.98062,-0.13709,97.924,-0.5718,0.032986,0.81973,40.97,#14.21,0.80837,0.19311,0.5561,-207.28,-0.13995,0.98062,-0.13709,97.924,-0.5718,0.032986,0.81973,40.97,#14.22,0.80837,0.19311,0.5561,-207.28,-0.13995,0.98062,-0.13709,97.924,-0.5718,0.032986,0.81973,40.97,#14.23,0.80837,0.19311,0.5561,-207.28,-0.13995,0.98062,-0.13709,97.924,-0.5718,0.032986,0.81973,40.97
+> view matrix models
+> #14.18,0.80837,0.19311,0.5561,-208.36,-0.13995,0.98062,-0.13709,99.272,-0.5718,0.032986,0.81973,48.884,#14.19,0.80837,0.19311,0.5561,-208.36,-0.13995,0.98062,-0.13709,99.272,-0.5718,0.032986,0.81973,48.884,#14.20,0.80837,0.19311,0.5561,-208.36,-0.13995,0.98062,-0.13709,99.272,-0.5718,0.032986,0.81973,48.884,#14.21,0.80837,0.19311,0.5561,-208.36,-0.13995,0.98062,-0.13709,99.272,-0.5718,0.032986,0.81973,48.884,#14.22,0.80837,0.19311,0.5561,-208.36,-0.13995,0.98062,-0.13709,99.272,-0.5718,0.032986,0.81973,48.884,#14.23,0.80837,0.19311,0.5561,-208.36,-0.13995,0.98062,-0.13709,99.272,-0.5718,0.032986,0.81973,48.884
+> view matrix models
+> #14.18,0.80837,0.19311,0.5561,-210,-0.13995,0.98062,-0.13709,101.32,-0.5718,0.032986,0.81973,47.352,#14.19,0.80837,0.19311,0.5561,-210,-0.13995,0.98062,-0.13709,101.32,-0.5718,0.032986,0.81973,47.352,#14.20,0.80837,0.19311,0.5561,-210,-0.13995,0.98062,-0.13709,101.32,-0.5718,0.032986,0.81973,47.352,#14.21,0.80837,0.19311,0.5561,-210,-0.13995,0.98062,-0.13709,101.32,-0.5718,0.032986,0.81973,47.352,#14.22,0.80837,0.19311,0.5561,-210,-0.13995,0.98062,-0.13709,101.32,-0.5718,0.032986,0.81973,47.352,#14.23,0.80837,0.19311,0.5561,-210,-0.13995,0.98062,-0.13709,101.32,-0.5718,0.032986,0.81973,47.352
+> view matrix models
+> #14.18,0.80837,0.19311,0.5561,-210.48,-0.13995,0.98062,-0.13709,101.64,-0.5718,0.032986,0.81973,49.476,#14.19,0.80837,0.19311,0.5561,-210.48,-0.13995,0.98062,-0.13709,101.64,-0.5718,0.032986,0.81973,49.476,#14.20,0.80837,0.19311,0.5561,-210.48,-0.13995,0.98062,-0.13709,101.64,-0.5718,0.032986,0.81973,49.476,#14.21,0.80837,0.19311,0.5561,-210.48,-0.13995,0.98062,-0.13709,101.64,-0.5718,0.032986,0.81973,49.476,#14.22,0.80837,0.19311,0.5561,-210.48,-0.13995,0.98062,-0.13709,101.64,-0.5718,0.032986,0.81973,49.476,#14.23,0.80837,0.19311,0.5561,-210.48,-0.13995,0.98062,-0.13709,101.64,-0.5718,0.032986,0.81973,49.476
+> view matrix models
+> #14.18,0.80837,0.19311,0.5561,-210.66,-0.13995,0.98062,-0.13709,102.23,-0.5718,0.032986,0.81973,49.688,#14.19,0.80837,0.19311,0.5561,-210.66,-0.13995,0.98062,-0.13709,102.23,-0.5718,0.032986,0.81973,49.688,#14.20,0.80837,0.19311,0.5561,-210.66,-0.13995,0.98062,-0.13709,102.23,-0.5718,0.032986,0.81973,49.688,#14.21,0.80837,0.19311,0.5561,-210.66,-0.13995,0.98062,-0.13709,102.23,-0.5718,0.032986,0.81973,49.688,#14.22,0.80837,0.19311,0.5561,-210.66,-0.13995,0.98062,-0.13709,102.23,-0.5718,0.032986,0.81973,49.688,#14.23,0.80837,0.19311,0.5561,-210.66,-0.13995,0.98062,-0.13709,102.23,-0.5718,0.032986,0.81973,49.688
+> view matrix models
+> #14.18,0.80837,0.19311,0.5561,-210.8,-0.13995,0.98062,-0.13709,101.87,-0.5718,0.032986,0.81973,49.66,#14.19,0.80837,0.19311,0.5561,-210.8,-0.13995,0.98062,-0.13709,101.87,-0.5718,0.032986,0.81973,49.66,#14.20,0.80837,0.19311,0.5561,-210.8,-0.13995,0.98062,-0.13709,101.87,-0.5718,0.032986,0.81973,49.66,#14.21,0.80837,0.19311,0.5561,-210.8,-0.13995,0.98062,-0.13709,101.87,-0.5718,0.032986,0.81973,49.66,#14.22,0.80837,0.19311,0.5561,-210.8,-0.13995,0.98062,-0.13709,101.87,-0.5718,0.032986,0.81973,49.66,#14.23,0.80837,0.19311,0.5561,-210.8,-0.13995,0.98062,-0.13709,101.87,-0.5718,0.032986,0.81973,49.66
+> view matrix models
+> #14.18,0.80837,0.19311,0.5561,-210.52,-0.13995,0.98062,-0.13709,102.68,-0.5718,0.032986,0.81973,49.65,#14.19,0.80837,0.19311,0.5561,-210.52,-0.13995,0.98062,-0.13709,102.68,-0.5718,0.032986,0.81973,49.65,#14.20,0.80837,0.19311,0.5561,-210.52,-0.13995,0.98062,-0.13709,102.68,-0.5718,0.032986,0.81973,49.65,#14.21,0.80837,0.19311,0.5561,-210.52,-0.13995,0.98062,-0.13709,102.68,-0.5718,0.032986,0.81973,49.65,#14.22,0.80837,0.19311,0.5561,-210.52,-0.13995,0.98062,-0.13709,102.68,-0.5718,0.032986,0.81973,49.65,#14.23,0.80837,0.19311,0.5561,-210.52,-0.13995,0.98062,-0.13709,102.68,-0.5718,0.032986,0.81973,49.65
+> view matrix models
+> #14.18,0.80837,0.19311,0.5561,-210.88,-0.13995,0.98062,-0.13709,101.99,-0.5718,0.032986,0.81973,49.281,#14.19,0.80837,0.19311,0.5561,-210.88,-0.13995,0.98062,-0.13709,101.99,-0.5718,0.032986,0.81973,49.281,#14.20,0.80837,0.19311,0.5561,-210.88,-0.13995,0.98062,-0.13709,101.99,-0.5718,0.032986,0.81973,49.281,#14.21,0.80837,0.19311,0.5561,-210.88,-0.13995,0.98062,-0.13709,101.99,-0.5718,0.032986,0.81973,49.281,#14.22,0.80837,0.19311,0.5561,-210.88,-0.13995,0.98062,-0.13709,101.99,-0.5718,0.032986,0.81973,49.281,#14.23,0.80837,0.19311,0.5561,-210.88,-0.13995,0.98062,-0.13709,101.99,-0.5718,0.032986,0.81973,49.281
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14.18,0.90217,0.16478,0.39866,-189.76,-0.14506,0.98623,-0.079383,88.113,-0.40625,0.013788,0.91366,-9.7772,#14.19,0.90217,0.16478,0.39866,-189.76,-0.14506,0.98623,-0.079383,88.113,-0.40625,0.013788,0.91366,-9.7772,#14.20,0.90217,0.16478,0.39866,-189.76,-0.14506,0.98623,-0.079383,88.113,-0.40625,0.013788,0.91366,-9.7772,#14.21,0.90217,0.16478,0.39866,-189.76,-0.14506,0.98623,-0.079383,88.113,-0.40625,0.013788,0.91366,-9.7772,#14.22,0.90217,0.16478,0.39866,-189.76,-0.14506,0.98623,-0.079383,88.113,-0.40625,0.013788,0.91366,-9.7772,#14.23,0.90217,0.16478,0.39866,-189.76,-0.14506,0.98623,-0.079383,88.113,-0.40625,0.013788,0.91366,-9.7772
+> view matrix models
+> #14.18,0.73256,-0.0785,0.67616,-165.18,7.8761e-05,0.99334,0.11524,4.2132,-0.6807,-0.084367,0.72769,122.38,#14.19,0.73256,-0.0785,0.67616,-165.18,7.8761e-05,0.99334,0.11524,4.2132,-0.6807,-0.084367,0.72769,122.38,#14.20,0.73256,-0.0785,0.67616,-165.18,7.8761e-05,0.99334,0.11524,4.2132,-0.6807,-0.084367,0.72769,122.38,#14.21,0.73256,-0.0785,0.67616,-165.18,7.8761e-05,0.99334,0.11524,4.2132,-0.6807,-0.084367,0.72769,122.38,#14.22,0.73256,-0.0785,0.67616,-165.18,7.8761e-05,0.99334,0.11524,4.2132,-0.6807,-0.084367,0.72769,122.38,#14.23,0.73256,-0.0785,0.67616,-165.18,7.8761e-05,0.99334,0.11524,4.2132,-0.6807,-0.084367,0.72769,122.38
+> view matrix models
+> #14.18,0.81738,-0.27013,0.50884,-105.65,0.13286,0.94783,0.28976,-60.912,-0.56057,-0.16924,0.81063,90.652,#14.19,0.81738,-0.27013,0.50884,-105.65,0.13286,0.94783,0.28976,-60.912,-0.56057,-0.16924,0.81063,90.652,#14.20,0.81738,-0.27013,0.50884,-105.65,0.13286,0.94783,0.28976,-60.912,-0.56057,-0.16924,0.81063,90.652,#14.21,0.81738,-0.27013,0.50884,-105.65,0.13286,0.94783,0.28976,-60.912,-0.56057,-0.16924,0.81063,90.652,#14.22,0.81738,-0.27013,0.50884,-105.65,0.13286,0.94783,0.28976,-60.912,-0.56057,-0.16924,0.81063,90.652,#14.23,0.81738,-0.27013,0.50884,-105.65,0.13286,0.94783,0.28976,-60.912,-0.56057,-0.16924,0.81063,90.652
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14.18,0.81738,-0.27013,0.50884,-106.1,0.13286,0.94783,0.28976,-61.548,-0.56057,-0.16924,0.81063,90.541,#14.19,0.81738,-0.27013,0.50884,-106.1,0.13286,0.94783,0.28976,-61.548,-0.56057,-0.16924,0.81063,90.541,#14.20,0.81738,-0.27013,0.50884,-106.1,0.13286,0.94783,0.28976,-61.548,-0.56057,-0.16924,0.81063,90.541,#14.21,0.81738,-0.27013,0.50884,-106.1,0.13286,0.94783,0.28976,-61.548,-0.56057,-0.16924,0.81063,90.541,#14.22,0.81738,-0.27013,0.50884,-106.1,0.13286,0.94783,0.28976,-61.548,-0.56057,-0.16924,0.81063,90.541,#14.23,0.81738,-0.27013,0.50884,-106.1,0.13286,0.94783,0.28976,-61.548,-0.56057,-0.16924,0.81063,90.541
+> view matrix models
+> #14.18,0.81738,-0.27013,0.50884,-106.17,0.13286,0.94783,0.28976,-60.954,-0.56057,-0.16924,0.81063,88.552,#14.19,0.81738,-0.27013,0.50884,-106.17,0.13286,0.94783,0.28976,-60.954,-0.56057,-0.16924,0.81063,88.552,#14.20,0.81738,-0.27013,0.50884,-106.17,0.13286,0.94783,0.28976,-60.954,-0.56057,-0.16924,0.81063,88.552,#14.21,0.81738,-0.27013,0.50884,-106.17,0.13286,0.94783,0.28976,-60.954,-0.56057,-0.16924,0.81063,88.552,#14.22,0.81738,-0.27013,0.50884,-106.17,0.13286,0.94783,0.28976,-60.954,-0.56057,-0.16924,0.81063,88.552,#14.23,0.81738,-0.27013,0.50884,-106.17,0.13286,0.94783,0.28976,-60.954,-0.56057,-0.16924,0.81063,88.552
+> view matrix models
+> #14.18,0.81738,-0.27013,0.50884,-105.89,0.13286,0.94783,0.28976,-61.165,-0.56057,-0.16924,0.81063,89.277,#14.19,0.81738,-0.27013,0.50884,-105.89,0.13286,0.94783,0.28976,-61.165,-0.56057,-0.16924,0.81063,89.277,#14.20,0.81738,-0.27013,0.50884,-105.89,0.13286,0.94783,0.28976,-61.165,-0.56057,-0.16924,0.81063,89.277,#14.21,0.81738,-0.27013,0.50884,-105.89,0.13286,0.94783,0.28976,-61.165,-0.56057,-0.16924,0.81063,89.277,#14.22,0.81738,-0.27013,0.50884,-105.89,0.13286,0.94783,0.28976,-61.165,-0.56057,-0.16924,0.81063,89.277,#14.23,0.81738,-0.27013,0.50884,-105.89,0.13286,0.94783,0.28976,-61.165,-0.56057,-0.16924,0.81063,89.277
+> view matrix models
+> #14.18,0.81738,-0.27013,0.50884,-105.8,0.13286,0.94783,0.28976,-61.106,-0.56057,-0.16924,0.81063,89.336,#14.19,0.81738,-0.27013,0.50884,-105.8,0.13286,0.94783,0.28976,-61.106,-0.56057,-0.16924,0.81063,89.336,#14.20,0.81738,-0.27013,0.50884,-105.8,0.13286,0.94783,0.28976,-61.106,-0.56057,-0.16924,0.81063,89.336,#14.21,0.81738,-0.27013,0.50884,-105.8,0.13286,0.94783,0.28976,-61.106,-0.56057,-0.16924,0.81063,89.336,#14.22,0.81738,-0.27013,0.50884,-105.8,0.13286,0.94783,0.28976,-61.106,-0.56057,-0.16924,0.81063,89.336,#14.23,0.81738,-0.27013,0.50884,-105.8,0.13286,0.94783,0.28976,-61.106,-0.56057,-0.16924,0.81063,89.336
+> view matrix models
+> #14.18,0.81738,-0.27013,0.50884,-106.01,0.13286,0.94783,0.28976,-61.448,-0.56057,-0.16924,0.81063,89.2,#14.19,0.81738,-0.27013,0.50884,-106.01,0.13286,0.94783,0.28976,-61.448,-0.56057,-0.16924,0.81063,89.2,#14.20,0.81738,-0.27013,0.50884,-106.01,0.13286,0.94783,0.28976,-61.448,-0.56057,-0.16924,0.81063,89.2,#14.21,0.81738,-0.27013,0.50884,-106.01,0.13286,0.94783,0.28976,-61.448,-0.56057,-0.16924,0.81063,89.2,#14.22,0.81738,-0.27013,0.50884,-106.01,0.13286,0.94783,0.28976,-61.448,-0.56057,-0.16924,0.81063,89.2,#14.23,0.81738,-0.27013,0.50884,-106.01,0.13286,0.94783,0.28976,-61.448,-0.56057,-0.16924,0.81063,89.2
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14.18,0.79642,-0.10626,0.59534,-155.79,-0.038659,0.97348,0.22547,-9.4421,-0.60351,-0.20258,0.77119,116.11,#14.19,0.79642,-0.10626,0.59534,-155.79,-0.038659,0.97348,0.22547,-9.4421,-0.60351,-0.20258,0.77119,116.11,#14.20,0.79642,-0.10626,0.59534,-155.79,-0.038659,0.97348,0.22547,-9.4421,-0.60351,-0.20258,0.77119,116.11,#14.21,0.79642,-0.10626,0.59534,-155.79,-0.038659,0.97348,0.22547,-9.4421,-0.60351,-0.20258,0.77119,116.11,#14.22,0.79642,-0.10626,0.59534,-155.79,-0.038659,0.97348,0.22547,-9.4421,-0.60351,-0.20258,0.77119,116.11,#14.23,0.79642,-0.10626,0.59534,-155.79,-0.038659,0.97348,0.22547,-9.4421,-0.60351,-0.20258,0.77119,116.11
+> view matrix models
+> #14.18,0.81649,-0.10759,0.56725,-153.61,-0.079512,0.95217,0.29504,-11.909,-0.57186,-0.286,0.76888,126.25,#14.19,0.81649,-0.10759,0.56725,-153.61,-0.079512,0.95217,0.29504,-11.909,-0.57186,-0.286,0.76888,126.25,#14.20,0.81649,-0.10759,0.56725,-153.61,-0.079512,0.95217,0.29504,-11.909,-0.57186,-0.286,0.76888,126.25,#14.21,0.81649,-0.10759,0.56725,-153.61,-0.079512,0.95217,0.29504,-11.909,-0.57186,-0.286,0.76888,126.25,#14.22,0.81649,-0.10759,0.56725,-153.61,-0.079512,0.95217,0.29504,-11.909,-0.57186,-0.286,0.76888,126.25,#14.23,0.81649,-0.10759,0.56725,-153.61,-0.079512,0.95217,0.29504,-11.909,-0.57186,-0.286,0.76888,126.25
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14.18,0.81649,-0.10759,0.56725,-152.67,-0.079512,0.95217,0.29504,-11.54,-0.57186,-0.286,0.76888,126.11,#14.19,0.81649,-0.10759,0.56725,-152.67,-0.079512,0.95217,0.29504,-11.54,-0.57186,-0.286,0.76888,126.11,#14.20,0.81649,-0.10759,0.56725,-152.67,-0.079512,0.95217,0.29504,-11.54,-0.57186,-0.286,0.76888,126.11,#14.21,0.81649,-0.10759,0.56725,-152.67,-0.079512,0.95217,0.29504,-11.54,-0.57186,-0.286,0.76888,126.11,#14.22,0.81649,-0.10759,0.56725,-152.67,-0.079512,0.95217,0.29504,-11.54,-0.57186,-0.286,0.76888,126.11,#14.23,0.81649,-0.10759,0.56725,-152.67,-0.079512,0.95217,0.29504,-11.54,-0.57186,-0.286,0.76888,126.11
+> view matrix models
+> #14.18,0.81649,-0.10759,0.56725,-152.18,-0.079512,0.95217,0.29504,-10.902,-0.57186,-0.286,0.76888,126.17,#14.19,0.81649,-0.10759,0.56725,-152.18,-0.079512,0.95217,0.29504,-10.902,-0.57186,-0.286,0.76888,126.17,#14.20,0.81649,-0.10759,0.56725,-152.18,-0.079512,0.95217,0.29504,-10.902,-0.57186,-0.286,0.76888,126.17,#14.21,0.81649,-0.10759,0.56725,-152.18,-0.079512,0.95217,0.29504,-10.902,-0.57186,-0.286,0.76888,126.17,#14.22,0.81649,-0.10759,0.56725,-152.18,-0.079512,0.95217,0.29504,-10.902,-0.57186,-0.286,0.76888,126.17,#14.23,0.81649,-0.10759,0.56725,-152.18,-0.079512,0.95217,0.29504,-10.902,-0.57186,-0.286,0.76888,126.17
+> view matrix models
+> #14.18,0.81649,-0.10759,0.56725,-152.61,-0.079512,0.95217,0.29504,-10.823,-0.57186,-0.286,0.76888,125.9,#14.19,0.81649,-0.10759,0.56725,-152.61,-0.079512,0.95217,0.29504,-10.823,-0.57186,-0.286,0.76888,125.9,#14.20,0.81649,-0.10759,0.56725,-152.61,-0.079512,0.95217,0.29504,-10.823,-0.57186,-0.286,0.76888,125.9,#14.21,0.81649,-0.10759,0.56725,-152.61,-0.079512,0.95217,0.29504,-10.823,-0.57186,-0.286,0.76888,125.9,#14.22,0.81649,-0.10759,0.56725,-152.61,-0.079512,0.95217,0.29504,-10.823,-0.57186,-0.286,0.76888,125.9,#14.23,0.81649,-0.10759,0.56725,-152.61,-0.079512,0.95217,0.29504,-10.823,-0.57186,-0.286,0.76888,125.9
+> view matrix models
+> #14.18,0.81649,-0.10759,0.56725,-152.88,-0.079512,0.95217,0.29504,-10.987,-0.57186,-0.286,0.76888,125.93,#14.19,0.81649,-0.10759,0.56725,-152.88,-0.079512,0.95217,0.29504,-10.987,-0.57186,-0.286,0.76888,125.93,#14.20,0.81649,-0.10759,0.56725,-152.88,-0.079512,0.95217,0.29504,-10.987,-0.57186,-0.286,0.76888,125.93,#14.21,0.81649,-0.10759,0.56725,-152.88,-0.079512,0.95217,0.29504,-10.987,-0.57186,-0.286,0.76888,125.93,#14.22,0.81649,-0.10759,0.56725,-152.88,-0.079512,0.95217,0.29504,-10.987,-0.57186,-0.286,0.76888,125.93,#14.23,0.81649,-0.10759,0.56725,-152.88,-0.079512,0.95217,0.29504,-10.987,-0.57186,-0.286,0.76888,125.93
+> select subtract #14.18
+models selected
+> view matrix models
+> #14.19,0.81649,-0.10759,0.56725,-157.54,-0.079512,0.95217,0.29504,-34.41,-0.57186,-0.286,0.76888,312.17,#14.20,0.81649,-0.10759,0.56725,-157.54,-0.079512,0.95217,0.29504,-34.41,-0.57186,-0.286,0.76888,312.17,#14.21,0.81649,-0.10759,0.56725,-157.54,-0.079512,0.95217,0.29504,-34.41,-0.57186,-0.286,0.76888,312.17,#14.22,0.81649,-0.10759,0.56725,-157.54,-0.079512,0.95217,0.29504,-34.41,-0.57186,-0.286,0.76888,312.17,#14.23,0.81649,-0.10759,0.56725,-157.54,-0.079512,0.95217,0.29504,-34.41,-0.57186,-0.286,0.76888,312.17
+> view matrix models
+> #14.19,0.81649,-0.10759,0.56725,-182.32,-0.079512,0.95217,0.29504,-25.214,-0.57186,-0.286,0.76888,307.05,#14.20,0.81649,-0.10759,0.56725,-182.32,-0.079512,0.95217,0.29504,-25.214,-0.57186,-0.286,0.76888,307.05,#14.21,0.81649,-0.10759,0.56725,-182.32,-0.079512,0.95217,0.29504,-25.214,-0.57186,-0.286,0.76888,307.05,#14.22,0.81649,-0.10759,0.56725,-182.32,-0.079512,0.95217,0.29504,-25.214,-0.57186,-0.286,0.76888,307.05,#14.23,0.81649,-0.10759,0.56725,-182.32,-0.079512,0.95217,0.29504,-25.214,-0.57186,-0.286,0.76888,307.05
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14.19,0.79616,-0.44478,0.41026,-69.512,0.27155,0.86853,0.41463,-122.3,-0.54074,-0.21871,0.81226,275.03,#14.20,0.79616,-0.44478,0.41026,-69.512,0.27155,0.86853,0.41463,-122.3,-0.54074,-0.21871,0.81226,275.03,#14.21,0.79616,-0.44478,0.41026,-69.512,0.27155,0.86853,0.41463,-122.3,-0.54074,-0.21871,0.81226,275.03,#14.22,0.79616,-0.44478,0.41026,-69.512,0.27155,0.86853,0.41463,-122.3,-0.54074,-0.21871,0.81226,275.03,#14.23,0.79616,-0.44478,0.41026,-69.512,0.27155,0.86853,0.41463,-122.3,-0.54074,-0.21871,0.81226,275.03
+> view matrix models
+> #14.19,0.5767,-0.8053,0.13748,124.63,0.68767,0.56937,0.45048,-170.31,-0.44105,-0.16525,0.88214,222.77,#14.20,0.5767,-0.8053,0.13748,124.63,0.68767,0.56937,0.45048,-170.31,-0.44105,-0.16525,0.88214,222.77,#14.21,0.5767,-0.8053,0.13748,124.63,0.68767,0.56937,0.45048,-170.31,-0.44105,-0.16525,0.88214,222.77,#14.22,0.5767,-0.8053,0.13748,124.63,0.68767,0.56937,0.45048,-170.31,-0.44105,-0.16525,0.88214,222.77,#14.23,0.5767,-0.8053,0.13748,124.63,0.68767,0.56937,0.45048,-170.31,-0.44105,-0.16525,0.88214,222.77
+> view matrix models
+> #14.19,0.67261,-0.69389,0.25713,49.239,0.56851,0.70697,0.4207,-162.61,-0.4737,-0.13679,0.87,227.76,#14.20,0.67261,-0.69389,0.25713,49.239,0.56851,0.70697,0.4207,-162.61,-0.4737,-0.13679,0.87,227.76,#14.21,0.67261,-0.69389,0.25713,49.239,0.56851,0.70697,0.4207,-162.61,-0.4737,-0.13679,0.87,227.76,#14.22,0.67261,-0.69389,0.25713,49.239,0.56851,0.70697,0.4207,-162.61,-0.4737,-0.13679,0.87,227.76,#14.23,0.67261,-0.69389,0.25713,49.239,0.56851,0.70697,0.4207,-162.61,-0.4737,-0.13679,0.87,227.76
+> view matrix models
+> #14.19,0.70787,-0.61793,0.34218,4.3382,0.5163,0.78324,0.34636,-147.71,-0.48204,-0.068514,0.87347,214.8,#14.20,0.70787,-0.61793,0.34218,4.3382,0.5163,0.78324,0.34636,-147.71,-0.48204,-0.068514,0.87347,214.8,#14.21,0.70787,-0.61793,0.34218,4.3382,0.5163,0.78324,0.34636,-147.71,-0.48204,-0.068514,0.87347,214.8,#14.22,0.70787,-0.61793,0.34218,4.3382,0.5163,0.78324,0.34636,-147.71,-0.48204,-0.068514,0.87347,214.8,#14.23,0.70787,-0.61793,0.34218,4.3382,0.5163,0.78324,0.34636,-147.71,-0.48204,-0.068514,0.87347,214.8
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14.19,0.70787,-0.61793,0.34218,6.9034,0.5163,0.78324,0.34636,-144.01,-0.48204,-0.068514,0.87347,223.11,#14.20,0.70787,-0.61793,0.34218,6.9034,0.5163,0.78324,0.34636,-144.01,-0.48204,-0.068514,0.87347,223.11,#14.21,0.70787,-0.61793,0.34218,6.9034,0.5163,0.78324,0.34636,-144.01,-0.48204,-0.068514,0.87347,223.11,#14.22,0.70787,-0.61793,0.34218,6.9034,0.5163,0.78324,0.34636,-144.01,-0.48204,-0.068514,0.87347,223.11,#14.23,0.70787,-0.61793,0.34218,6.9034,0.5163,0.78324,0.34636,-144.01,-0.48204,-0.068514,0.87347,223.11
+> view matrix models
+> #14.19,0.70787,-0.61793,0.34218,16.063,0.5163,0.78324,0.34636,-147.73,-0.48204,-0.068514,0.87347,227.42,#14.20,0.70787,-0.61793,0.34218,16.063,0.5163,0.78324,0.34636,-147.73,-0.48204,-0.068514,0.87347,227.42,#14.21,0.70787,-0.61793,0.34218,16.063,0.5163,0.78324,0.34636,-147.73,-0.48204,-0.068514,0.87347,227.42,#14.22,0.70787,-0.61793,0.34218,16.063,0.5163,0.78324,0.34636,-147.73,-0.48204,-0.068514,0.87347,227.42,#14.23,0.70787,-0.61793,0.34218,16.063,0.5163,0.78324,0.34636,-147.73,-0.48204,-0.068514,0.87347,227.42
+> view matrix models
+> #14.19,0.70787,-0.61793,0.34218,18.424,0.5163,0.78324,0.34636,-152.52,-0.48204,-0.068514,0.87347,220.75,#14.20,0.70787,-0.61793,0.34218,18.424,0.5163,0.78324,0.34636,-152.52,-0.48204,-0.068514,0.87347,220.75,#14.21,0.70787,-0.61793,0.34218,18.424,0.5163,0.78324,0.34636,-152.52,-0.48204,-0.068514,0.87347,220.75,#14.22,0.70787,-0.61793,0.34218,18.424,0.5163,0.78324,0.34636,-152.52,-0.48204,-0.068514,0.87347,220.75,#14.23,0.70787,-0.61793,0.34218,18.424,0.5163,0.78324,0.34636,-152.52,-0.48204,-0.068514,0.87347,220.75
+> view matrix models
+> #14.19,0.70787,-0.61793,0.34218,17.595,0.5163,0.78324,0.34636,-151.81,-0.48204,-0.068514,0.87347,222.34,#14.20,0.70787,-0.61793,0.34218,17.595,0.5163,0.78324,0.34636,-151.81,-0.48204,-0.068514,0.87347,222.34,#14.21,0.70787,-0.61793,0.34218,17.595,0.5163,0.78324,0.34636,-151.81,-0.48204,-0.068514,0.87347,222.34,#14.22,0.70787,-0.61793,0.34218,17.595,0.5163,0.78324,0.34636,-151.81,-0.48204,-0.068514,0.87347,222.34,#14.23,0.70787,-0.61793,0.34218,17.595,0.5163,0.78324,0.34636,-151.81,-0.48204,-0.068514,0.87347,222.34
+> view matrix models
+> #14.19,0.70787,-0.61793,0.34218,17.738,0.5163,0.78324,0.34636,-150.01,-0.48204,-0.068514,0.87347,220.54,#14.20,0.70787,-0.61793,0.34218,17.738,0.5163,0.78324,0.34636,-150.01,-0.48204,-0.068514,0.87347,220.54,#14.21,0.70787,-0.61793,0.34218,17.738,0.5163,0.78324,0.34636,-150.01,-0.48204,-0.068514,0.87347,220.54,#14.22,0.70787,-0.61793,0.34218,17.738,0.5163,0.78324,0.34636,-150.01,-0.48204,-0.068514,0.87347,220.54,#14.23,0.70787,-0.61793,0.34218,17.738,0.5163,0.78324,0.34636,-150.01,-0.48204,-0.068514,0.87347,220.54
+> view matrix models
+> #14.19,0.70787,-0.61793,0.34218,17.314,0.5163,0.78324,0.34636,-150.91,-0.48204,-0.068514,0.87347,220.3,#14.20,0.70787,-0.61793,0.34218,17.314,0.5163,0.78324,0.34636,-150.91,-0.48204,-0.068514,0.87347,220.3,#14.21,0.70787,-0.61793,0.34218,17.314,0.5163,0.78324,0.34636,-150.91,-0.48204,-0.068514,0.87347,220.3,#14.22,0.70787,-0.61793,0.34218,17.314,0.5163,0.78324,0.34636,-150.91,-0.48204,-0.068514,0.87347,220.3,#14.23,0.70787,-0.61793,0.34218,17.314,0.5163,0.78324,0.34636,-150.91,-0.48204,-0.068514,0.87347,220.3
+> view matrix models
+> #14.19,0.70787,-0.61793,0.34218,16.852,0.5163,0.78324,0.34636,-151.05,-0.48204,-0.068514,0.87347,220.2,#14.20,0.70787,-0.61793,0.34218,16.852,0.5163,0.78324,0.34636,-151.05,-0.48204,-0.068514,0.87347,220.2,#14.21,0.70787,-0.61793,0.34218,16.852,0.5163,0.78324,0.34636,-151.05,-0.48204,-0.068514,0.87347,220.2,#14.22,0.70787,-0.61793,0.34218,16.852,0.5163,0.78324,0.34636,-151.05,-0.48204,-0.068514,0.87347,220.2,#14.23,0.70787,-0.61793,0.34218,16.852,0.5163,0.78324,0.34636,-151.05,-0.48204,-0.068514,0.87347,220.2
+> view matrix models
+> #14.19,0.70787,-0.61793,0.34218,16.921,0.5163,0.78324,0.34636,-150.7,-0.48204,-0.068514,0.87347,219.45,#14.20,0.70787,-0.61793,0.34218,16.921,0.5163,0.78324,0.34636,-150.7,-0.48204,-0.068514,0.87347,219.45,#14.21,0.70787,-0.61793,0.34218,16.921,0.5163,0.78324,0.34636,-150.7,-0.48204,-0.068514,0.87347,219.45,#14.22,0.70787,-0.61793,0.34218,16.921,0.5163,0.78324,0.34636,-150.7,-0.48204,-0.068514,0.87347,219.45,#14.23,0.70787,-0.61793,0.34218,16.921,0.5163,0.78324,0.34636,-150.7,-0.48204,-0.068514,0.87347,219.45
+> view matrix models
+> #14.19,0.70787,-0.61793,0.34218,16.545,0.5163,0.78324,0.34636,-150.76,-0.48204,-0.068514,0.87347,220.07,#14.20,0.70787,-0.61793,0.34218,16.545,0.5163,0.78324,0.34636,-150.76,-0.48204,-0.068514,0.87347,220.07,#14.21,0.70787,-0.61793,0.34218,16.545,0.5163,0.78324,0.34636,-150.76,-0.48204,-0.068514,0.87347,220.07,#14.22,0.70787,-0.61793,0.34218,16.545,0.5163,0.78324,0.34636,-150.76,-0.48204,-0.068514,0.87347,220.07,#14.23,0.70787,-0.61793,0.34218,16.545,0.5163,0.78324,0.34636,-150.76,-0.48204,-0.068514,0.87347,220.07
+> view matrix models
+> #14.19,0.70787,-0.61793,0.34218,16.918,0.5163,0.78324,0.34636,-150.94,-0.48204,-0.068514,0.87347,219.76,#14.20,0.70787,-0.61793,0.34218,16.918,0.5163,0.78324,0.34636,-150.94,-0.48204,-0.068514,0.87347,219.76,#14.21,0.70787,-0.61793,0.34218,16.918,0.5163,0.78324,0.34636,-150.94,-0.48204,-0.068514,0.87347,219.76,#14.22,0.70787,-0.61793,0.34218,16.918,0.5163,0.78324,0.34636,-150.94,-0.48204,-0.068514,0.87347,219.76,#14.23,0.70787,-0.61793,0.34218,16.918,0.5163,0.78324,0.34636,-150.94,-0.48204,-0.068514,0.87347,219.76
+> view matrix models
+> #14.19,0.70787,-0.61793,0.34218,17.024,0.5163,0.78324,0.34636,-150.78,-0.48204,-0.068514,0.87347,219.36,#14.20,0.70787,-0.61793,0.34218,17.024,0.5163,0.78324,0.34636,-150.78,-0.48204,-0.068514,0.87347,219.36,#14.21,0.70787,-0.61793,0.34218,17.024,0.5163,0.78324,0.34636,-150.78,-0.48204,-0.068514,0.87347,219.36,#14.22,0.70787,-0.61793,0.34218,17.024,0.5163,0.78324,0.34636,-150.78,-0.48204,-0.068514,0.87347,219.36,#14.23,0.70787,-0.61793,0.34218,17.024,0.5163,0.78324,0.34636,-150.78,-0.48204,-0.068514,0.87347,219.36
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14.19,0.64774,-0.61616,0.44809,5.6773,0.58448,0.77915,0.2265,-137.54,-0.48869,0.11518,0.86482,185.01,#14.20,0.64774,-0.61616,0.44809,5.6773,0.58448,0.77915,0.2265,-137.54,-0.48869,0.11518,0.86482,185.01,#14.21,0.64774,-0.61616,0.44809,5.6773,0.58448,0.77915,0.2265,-137.54,-0.48869,0.11518,0.86482,185.01,#14.22,0.64774,-0.61616,0.44809,5.6773,0.58448,0.77915,0.2265,-137.54,-0.48869,0.11518,0.86482,185.01,#14.23,0.64774,-0.61616,0.44809,5.6773,0.58448,0.77915,0.2265,-137.54,-0.48869,0.11518,0.86482,185.01
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14.19,0.64774,-0.61616,0.44809,5.9331,0.58448,0.77915,0.2265,-137.96,-0.48869,0.11518,0.86482,185.4,#14.20,0.64774,-0.61616,0.44809,5.9331,0.58448,0.77915,0.2265,-137.96,-0.48869,0.11518,0.86482,185.4,#14.21,0.64774,-0.61616,0.44809,5.9331,0.58448,0.77915,0.2265,-137.96,-0.48869,0.11518,0.86482,185.4,#14.22,0.64774,-0.61616,0.44809,5.9331,0.58448,0.77915,0.2265,-137.96,-0.48869,0.11518,0.86482,185.4,#14.23,0.64774,-0.61616,0.44809,5.9331,0.58448,0.77915,0.2265,-137.96,-0.48869,0.11518,0.86482,185.4
+> select subtract #14.19
+models selected
+> select subtract #14.20
+models selected
+> select add #14.20
+models selected
+> view matrix models
+> #14.20,0.64774,-0.61616,0.44809,-1.6609,0.58448,0.77915,0.2265,-133.88,-0.48869,0.11518,0.86482,136.63,#14.21,0.64774,-0.61616,0.44809,-1.6609,0.58448,0.77915,0.2265,-133.88,-0.48869,0.11518,0.86482,136.63,#14.22,0.64774,-0.61616,0.44809,-1.6609,0.58448,0.77915,0.2265,-133.88,-0.48869,0.11518,0.86482,136.63,#14.23,0.64774,-0.61616,0.44809,-1.6609,0.58448,0.77915,0.2265,-133.88,-0.48869,0.11518,0.86482,136.63
+> view matrix models
+> #14.20,0.64774,-0.61616,0.44809,0.098104,0.58448,0.77915,0.2265,-139.37,-0.48869,0.11518,0.86482,134.04,#14.21,0.64774,-0.61616,0.44809,0.098104,0.58448,0.77915,0.2265,-139.37,-0.48869,0.11518,0.86482,134.04,#14.22,0.64774,-0.61616,0.44809,0.098104,0.58448,0.77915,0.2265,-139.37,-0.48869,0.11518,0.86482,134.04,#14.23,0.64774,-0.61616,0.44809,0.098104,0.58448,0.77915,0.2265,-139.37,-0.48869,0.11518,0.86482,134.04
+> view matrix models
+> #14.20,0.64774,-0.61616,0.44809,5.3447,0.58448,0.77915,0.2265,-138.74,-0.48869,0.11518,0.86482,133.24,#14.21,0.64774,-0.61616,0.44809,5.3447,0.58448,0.77915,0.2265,-138.74,-0.48869,0.11518,0.86482,133.24,#14.22,0.64774,-0.61616,0.44809,5.3447,0.58448,0.77915,0.2265,-138.74,-0.48869,0.11518,0.86482,133.24,#14.23,0.64774,-0.61616,0.44809,5.3447,0.58448,0.77915,0.2265,-138.74,-0.48869,0.11518,0.86482,133.24
+> view matrix models
+> #14.20,0.64774,-0.61616,0.44809,5.101,0.58448,0.77915,0.2265,-139.08,-0.48869,0.11518,0.86482,134.1,#14.21,0.64774,-0.61616,0.44809,5.101,0.58448,0.77915,0.2265,-139.08,-0.48869,0.11518,0.86482,134.1,#14.22,0.64774,-0.61616,0.44809,5.101,0.58448,0.77915,0.2265,-139.08,-0.48869,0.11518,0.86482,134.1,#14.23,0.64774,-0.61616,0.44809,5.101,0.58448,0.77915,0.2265,-139.08,-0.48869,0.11518,0.86482,134.1
+> view matrix models
+> #14.20,0.64774,-0.61616,0.44809,5.2881,0.58448,0.77915,0.2265,-138.92,-0.48869,0.11518,0.86482,134.18,#14.21,0.64774,-0.61616,0.44809,5.2881,0.58448,0.77915,0.2265,-138.92,-0.48869,0.11518,0.86482,134.18,#14.22,0.64774,-0.61616,0.44809,5.2881,0.58448,0.77915,0.2265,-138.92,-0.48869,0.11518,0.86482,134.18,#14.23,0.64774,-0.61616,0.44809,5.2881,0.58448,0.77915,0.2265,-138.92,-0.48869,0.11518,0.86482,134.18
+> select subtract #14.20
+models selected
+> view matrix models
+> #14.21,0.64774,-0.61616,0.44809,0.74509,0.58448,0.77915,0.2265,-135.74,-0.48869,0.11518,0.86482,84.115,#14.22,0.64774,-0.61616,0.44809,0.74509,0.58448,0.77915,0.2265,-135.74,-0.48869,0.11518,0.86482,84.115,#14.23,0.64774,-0.61616,0.44809,0.74509,0.58448,0.77915,0.2265,-135.74,-0.48869,0.11518,0.86482,84.115
+> view matrix models
+> #14.21,0.64774,-0.61616,0.44809,2.6699,0.58448,0.77915,0.2265,-139.45,-0.48869,0.11518,0.86482,81.537,#14.22,0.64774,-0.61616,0.44809,2.6699,0.58448,0.77915,0.2265,-139.45,-0.48869,0.11518,0.86482,81.537,#14.23,0.64774,-0.61616,0.44809,2.6699,0.58448,0.77915,0.2265,-139.45,-0.48869,0.11518,0.86482,81.537
+> view matrix models
+> #14.21,0.64774,-0.61616,0.44809,2.7772,0.58448,0.77915,0.2265,-139.73,-0.48869,0.11518,0.86482,82.862,#14.22,0.64774,-0.61616,0.44809,2.7772,0.58448,0.77915,0.2265,-139.73,-0.48869,0.11518,0.86482,82.862,#14.23,0.64774,-0.61616,0.44809,2.7772,0.58448,0.77915,0.2265,-139.73,-0.48869,0.11518,0.86482,82.862
+> view matrix models
+> #14.21,0.64774,-0.61616,0.44809,3.4841,0.58448,0.77915,0.2265,-139.77,-0.48869,0.11518,0.86482,82.785,#14.22,0.64774,-0.61616,0.44809,3.4841,0.58448,0.77915,0.2265,-139.77,-0.48869,0.11518,0.86482,82.785,#14.23,0.64774,-0.61616,0.44809,3.4841,0.58448,0.77915,0.2265,-139.77,-0.48869,0.11518,0.86482,82.785
+> view matrix models
+> #14.21,0.64774,-0.61616,0.44809,3.5968,0.58448,0.77915,0.2265,-139.8,-0.48869,0.11518,0.86482,82.632,#14.22,0.64774,-0.61616,0.44809,3.5968,0.58448,0.77915,0.2265,-139.8,-0.48869,0.11518,0.86482,82.632,#14.23,0.64774,-0.61616,0.44809,3.5968,0.58448,0.77915,0.2265,-139.8,-0.48869,0.11518,0.86482,82.632
+> select subtract #14.21
+models selected
+> view matrix models
+> #14.22,0.64774,-0.61616,0.44809,9.6705,0.58448,0.77915,0.2265,-147.01,-0.48869,0.11518,0.86482,35.369,#14.23,0.64774,-0.61616,0.44809,9.6705,0.58448,0.77915,0.2265,-147.01,-0.48869,0.11518,0.86482,35.369
+> view matrix models
+> #14.22,0.64774,-0.61616,0.44809,4.3118,0.58448,0.77915,0.2265,-144.16,-0.48869,0.11518,0.86482,28.201,#14.23,0.64774,-0.61616,0.44809,4.3118,0.58448,0.77915,0.2265,-144.16,-0.48869,0.11518,0.86482,28.201
+> view matrix models
+> #14.22,0.64774,-0.61616,0.44809,2.607,0.58448,0.77915,0.2265,-142.28,-0.48869,0.11518,0.86482,30.332,#14.23,0.64774,-0.61616,0.44809,2.607,0.58448,0.77915,0.2265,-142.28,-0.48869,0.11518,0.86482,30.332
+> view matrix models
+> #14.22,0.64774,-0.61616,0.44809,2.8731,0.58448,0.77915,0.2265,-142.85,-0.48869,0.11518,0.86482,30.727,#14.23,0.64774,-0.61616,0.44809,2.8731,0.58448,0.77915,0.2265,-142.85,-0.48869,0.11518,0.86482,30.727
+> view matrix models
+> #14.22,0.64774,-0.61616,0.44809,2.9582,0.58448,0.77915,0.2265,-142.92,-0.48869,0.11518,0.86482,30.563,#14.23,0.64774,-0.61616,0.44809,2.9582,0.58448,0.77915,0.2265,-142.92,-0.48869,0.11518,0.86482,30.563
+> select subtract #14.22
+models selected
+> view matrix models
+> #14.23,0.64774,-0.61616,0.44809,-4.8722,0.58448,0.77915,0.2265,-142.88,-0.48869,0.11518,0.86482,-19.774
+> view matrix models
+> #14.23,0.64774,-0.61616,0.44809,0.84389,0.58448,0.77915,0.2265,-145.51,-0.48869,0.11518,0.86482,-22.861
+> view matrix models
+> #14.23,0.64774,-0.61616,0.44809,0.91632,0.58448,0.77915,0.2265,-145.75,-0.48869,0.11518,0.86482,-22.497
+> select subtract #14.23
+Nothing selected
+> vop add #14
+Opened volume sum as #15, grid size 113,52,230, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> select add #15
+models selected
+> view matrix models
+> #15,0.99832,-0.056593,-0.012348,18.948,0.056358,0.99824,-0.018621,-16.276,0.01338,0.017894,0.99975,45.256
+> view matrix models
+> #15,0.99832,-0.056593,-0.012348,-56.689,0.056358,0.99824,-0.018621,-135.48,0.01338,0.017894,0.99975,41.875
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,-0.48947,-0.83857,0.23918,365.71,0.84983,-0.52021,-0.084721,71.183,0.19547,0.16179,0.96727,-20.576
+> show #!14.1-23 target m
+> view matrix models
+> #15,-0.79276,-0.51937,0.31905,338.18,0.59936,-0.75946,0.25296,122.52,0.11093,0.39176,0.91335,-49.017
+> view matrix models
+> #15,-0.79242,-0.53344,0.29582,344.82,0.52928,-0.84239,-0.10124,207.92,0.30321,0.076346,0.94986,-18.829
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,-0.79242,-0.53344,0.29582,376.95,0.52928,-0.84239,-0.10124,257.22,0.30321,0.076346,0.94986,9.0682
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,-0.82987,-0.5248,0.18945,398.04,0.49383,-0.84891,-0.18838,278.5,0.25969,-0.062774,0.96365,47.013
+> view matrix models
+> #15,-0.82728,-0.52615,0.19689,396.75,0.49767,-0.84898,-0.17766,276.18,0.26063,-0.048989,0.96419,43.604
+> view matrix models
+> #15,-0.81921,-0.52964,0.21997,392.55,0.50956,-0.8482,-0.14456,268.78,0.26314,-0.0063342,0.96474,33.303
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,-0.81921,-0.52964,0.21997,399.6,0.50956,-0.8482,-0.14456,276.39,0.26314,-0.0063342,0.96474,38.106
+> view matrix models
+> #15,-0.81921,-0.52964,0.21997,410.23,0.50956,-0.8482,-0.14456,250.47,0.26314,-0.0063342,0.96474,32.669
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,-0.82091,-0.53026,0.21198,411.9,0.52453,-0.84691,-0.087224,238.73,0.22578,0.039589,0.97337,27.951
+> view matrix models
+> #15,-0.82308,-0.53218,0.1983,414.8,0.5449,-0.83842,0.01159,218.09,0.16009,0.11759,0.98007,21.556
+> view matrix models
+> #15,-0.82252,-0.56868,-0.0077974,453.99,0.56872,-0.8223,-0.019464,214.57,0.0046572,-0.020444,0.99978,79.542
+> view matrix models
+> #15,-0.7677,-0.63907,-0.047083,465.6,0.64068,-0.76694,-0.036535,190.87,-0.012761,-0.058213,0.99822,91.7
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,-0.7677,-0.63907,-0.047083,464.11,0.64068,-0.76694,-0.036535,200.51,-0.012761,-0.058213,0.99822,107.79
+> view matrix models
+> #15,-0.7677,-0.63907,-0.047083,462.19,0.64068,-0.76694,-0.036535,196.51,-0.012761,-0.058213,0.99822,109.99
+> view matrix models
+> #15,-0.7677,-0.63907,-0.047083,460.42,0.64068,-0.76694,-0.036535,196.62,-0.012761,-0.058213,0.99822,107.98
+> view matrix models
+> #15,-0.7677,-0.63907,-0.047083,459.29,0.64068,-0.76694,-0.036535,195.69,-0.012761,-0.058213,0.99822,110.18
+> view matrix models
+> #15,-0.7677,-0.63907,-0.047083,456.29,0.64068,-0.76694,-0.036535,191.91,-0.012761,-0.058213,0.99822,108.74
+> view matrix models
+> #15,-0.7677,-0.63907,-0.047083,457.43,0.64068,-0.76694,-0.036535,198.85,-0.012761,-0.058213,0.99822,108.41
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 1147 points
+correlation = 0.2253, correlation about mean = 0.09532, overlap = 19.55
+steps = 524, shift = 2.43, angle = 0.804 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.74342240 -0.66590053 -0.06244692 457.89648987
+.66848060 -0.74278055 -0.03755974 188.86467262
+-0.02137330 -0.06966731 0.99734129 112.47351216
+Axis -0.02404342 -0.03075756 0.99923765
+Axis point 193.56584846 184.30270308 0.00000000
+Rotation angle (degrees) 138.11023512
+Shift along axis 95.56935496
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,-0.757,-0.65341,-0.0018111,449.78,0.65323,-0.75686,0.021338,186.68,-0.015313,0.01497,0.99977,91.979
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,-0.757,-0.65341,-0.0018111,452.77,0.65323,-0.75686,0.021338,191.88,-0.015313,0.01497,0.99977,91.69
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,-0.86997,-0.49306,0.0065201,436.26,0.49305,-0.86963,0.025229,247.37,-0.0067692,0.025163,0.99966,87.761
+> view matrix models
+> #15,-0.83858,-0.54309,0.042928,436.28,0.54459,-0.83779,0.039197,228.25,0.014677,0.056247,0.99831,76.805
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,-0.83858,-0.54309,0.042928,442.98,0.54459,-0.83779,0.039197,231.45,0.014677,0.056247,0.99831,75.302
+> view matrix models
+> #15,-0.83858,-0.54309,0.042928,443.73,0.54459,-0.83779,0.039197,231.03,0.014677,0.056247,0.99831,78.037
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 1147 points
+correlation = 0.452, correlation about mean = 0.07864, overlap = 74.87
+steps = 928, shift = 11.4, angle = 11.2 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.91398218 -0.40535639 0.01796550 436.59737318
+.40448302 -0.91372720 -0.03867920 292.34568719
+.03209443 -0.02808536 0.99909016 88.52911268
+Axis 0.01307830 -0.01744243 0.99976233
+Axis point 186.62160621 193.01884058 0.00000000
+Rotation angle (degrees) 156.10787238
+Shift along axis 89.11880368
+> view matrix models
+> #15,-0.92338,-0.38258,0.03182,435.24,0.38183,-0.92383,-0.02724,291.81,0.039818,-0.013003,0.99912,85.778
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 1147 points
+correlation = 0.4558, correlation about mean = 0.1422, overlap = 74.22
+steps = 68, shift = 3.86, angle = 3.25 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.91313809 -0.40307345 0.06091479 433.82234527
+.40373171 -0.91487597 -0.00163193 284.38930151
+.05638726 0.02310305 0.99814163 73.24370398
+Axis 0.03064306 0.00560894 0.99951465
+Axis point 185.85653899 187.44365440 0.00000000
+Rotation angle (degrees) 156.19667031
+Shift along axis 88.09692359
+> view matrix models
+> #15,-0.9222,-0.37961,0.073809,428.91,0.38136,-0.92436,0.010857,290.73,0.064104,0.03816,0.99721,69.06
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 1147 points
+correlation = 0.4559, correlation about mean = 0.1424, overlap = 74.22
+steps = 48, shift = 1.01, angle = 0.00821 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.91317281 -0.40298328 0.06099088 433.80325549
+.40364761 -0.91491321 -0.00155270 284.40904126
+.05642707 0.02320094 0.99813711 73.21560497
+Axis 0.03067276 0.00565511 0.99951348
+Axis point 185.85167498 187.43901327 0.00000000
+Rotation angle (degrees) 156.20209995
+Shift along axis 88.09429117
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,-0.92384,-0.38095,0.037355,435.27,0.381,-0.92456,-0.0061744,292.68,0.036889,0.0085281,0.99928,80.027
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,-0.92384,-0.38095,0.037355,434.1,0.381,-0.92456,-0.0061744,290.3,0.036889,0.0085281,0.99928,81.774
+> view matrix models
+> #15,-0.92384,-0.38095,0.037355,432.32,0.381,-0.92456,-0.0061744,289.9,0.036889,0.0085281,0.99928,82.632
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 1147 points
+correlation = 0.4554, correlation about mean = 0.142, overlap = 74.24
+steps = 64, shift = 4.61, angle = 2.31 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.91315600 -0.40304106 0.06086059 433.82050821
+.40369676 -0.91489135 -0.00165399 284.38931597
+.05634746 0.02305888 0.99814490 73.25342389
+Axis 0.03061824 0.00559159 0.99951551
+Axis point 185.85900034 187.44009787 0.00000000
+Rotation angle (degrees) 156.19880172
+Shift along axis 88.09094359
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,-0.92155,-0.38003,0.079557,428.28,0.38212,-0.92403,0.012417,289.53,0.068794,0.041844,0.99675,66.751
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,-0.92155,-0.38003,0.079557,427.03,0.38212,-0.92403,0.012417,289.29,0.068794,0.041844,0.99675,67.63
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,-0.92591,-0.37605,0.035785,433.52,0.37631,-0.9265,0.0003528,292.76,0.033022,0.013793,0.99936,80.416
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,-0.92591,-0.37605,0.035785,431.17,0.37631,-0.9265,0.0003528,292.26,0.033022,0.013793,0.99936,81.69
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,-0.92645,-0.37531,0.028895,432.14,0.37543,-0.92685,-0.0015706,292.8,0.027371,0.0093929,0.99958,83.731
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 1147 points
+correlation = 0.4524, correlation about mean = 0.0793, overlap = 74.86
+steps = 72, shift = 4.74, angle = 1.53 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.91402935 -0.40525044 0.01795596 436.58534262
+.40438034 -0.91377657 -0.03858635 292.35563275
+.03204487 -0.02800802 0.99909393 88.51726583
+Axis 0.01306253 -0.01739753 0.99976332
+Axis point 186.62457527 193.00752914 0.00000000
+Rotation angle (degrees) 156.11443570
+Shift along axis 89.11295842
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,-0.92342,-0.38247,0.031809,431.96,0.38172,-0.92388,-0.027148,293.09,0.03977,-0.012927,0.99913,85.756
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 1147 points
+correlation = 0.4525, correlation about mean = 0.07931, overlap = 74.78
+steps = 100, shift = 5.56, angle = 0.00345 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.91404639 -0.40521130 0.01797236 436.59027077
+.40434203 -0.91379521 -0.03854644 292.36321553
+.03204251 -0.02796626 0.99909517 88.52349186
+Axis 0.01306608 -0.01737604 0.99976365
+Axis point 186.62949085 193.00604048 0.00000000
+Rotation angle (degrees) 156.11687138
+Shift along axis 89.12697762
+> view matrix models
+> #15,-0.92344,-0.38243,0.031824,439.07,0.38168,-0.9239,-0.027107,301.71,0.039769,-0.012885,0.99913,83.965
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,-0.91784,-0.39153,0.065328,435.06,0.39556,-0.91589,0.068356,282.92,0.03307,0.088581,0.99552,62.594
+> view matrix models
+> #15,-0.92046,-0.3898,0.028555,440.68,0.39072,-0.91956,0.041743,288.67,0.0099869,0.04958,0.99872,75.391
+> view matrix models
+> #15,-0.95201,-0.2997,-0.06201,439.67,0.29772,-0.95384,0.039272,314.47,-0.070918,0.018926,0.9973,97.917
+> view matrix models
+> #15,-0.95344,-0.29963,-0.034298,435.76,0.30053,-0.95345,-0.024801,323.47,-0.02527,-0.033954,0.9991,101.09
+> view matrix models
+> #15,-0.96252,-0.26366,0.063485,414.58,0.26528,-0.964,0.018391,326.07,0.056351,0.034543,0.99781,70.189
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,-0.96252,-0.26366,0.063485,414.91,0.26528,-0.964,0.018391,326.83,0.056351,0.034543,0.99781,74.911
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 1147 points
+correlation = 0.5359, correlation about mean = 0.03438, overlap = 117.6
+steps = 88, shift = 2.21, angle = 3.5 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.96748001 -0.25278105 0.00917386 420.32776737
+.25294636 -0.96694615 0.03214462 326.80354398
+.00074508 0.03341977 0.99944112 83.44272426
+Axis 0.00252107 0.01666428 0.99985796
+Axis point 189.14852996 189.70994648 0.00000000
+Rotation angle (degrees) 165.35083639
+Shift along axis 89.93649238
+> view matrix models
+> #15,-0.97345,-0.22793,0.021256,414.69,0.22866,-0.97254,0.043341,329.91,0.010793,0.047051,0.99883,79.598
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 1147 points
+correlation = 0.5359, correlation about mean = 0.0344, overlap = 117.6
+steps = 72, shift = 2.59, angle = 0.00626 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.96749560 -0.25272368 0.00911005 420.32811281
+.25288694 -0.96695948 0.03221104 326.80718311
+.00066856 0.03346785 0.99943957 83.44392159
+Axis 0.00248538 0.01669326 0.99985757
+Axis point 189.15509345 189.70435195 0.00000000
+Rotation angle (degrees) 165.35428909
+Shift along axis 89.93218906
+> view matrix models
+> #15,-0.97346,-0.22787,0.02119,413.44,0.2286,-0.97255,0.043406,329.72,0.010717,0.047098,0.99883,78.583
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 1147 points
+correlation = 0.5358, correlation about mean = 0.03443, overlap = 117.7
+steps = 60, shift = 2.8, angle = 0.0119 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.96747008 -0.25281782 0.00920839 420.33121049
+.25298419 -0.96693922 0.03205535 326.80984984
+.00079979 0.03334217 0.99944367 83.45574154
+Axis 0.00254376 0.01662194 0.99985861
+Axis point 189.14548668 189.71892891 0.00000000
+Rotation angle (degrees) 165.34863674
+Shift along axis 89.94537670
+> view matrix models
+> #15,-0.97344,-0.22797,0.021292,414.5,0.2287,-0.97253,0.043253,328.58,0.010847,0.046973,0.99884,79.679
+> view matrix models
+> #15,-0.97344,-0.22797,0.021292,414.19,0.2287,-0.97253,0.043253,328.81,0.010847,0.046973,0.99884,79.264
+> view matrix models
+> #15,-0.97344,-0.22797,0.021292,415.52,0.2287,-0.97253,0.043253,328.51,0.010847,0.046973,0.99884,78.957
+> view matrix models
+> #15,-0.97344,-0.22797,0.021292,414.36,0.2287,-0.97253,0.043253,327.79,0.010847,0.046973,0.99884,78.658
+> view matrix models
+> #15,-0.97344,-0.22797,0.021292,414.75,0.2287,-0.97253,0.043253,327.72,0.010847,0.046973,0.99884,78.992
+> view matrix models
+> #15,-0.97344,-0.22797,0.021292,415.18,0.2287,-0.97253,0.043253,327.47,0.010847,0.046973,0.99884,80.079
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,-0.97089,-0.23819,0.025215,416.45,0.23937,-0.96866,0.066284,321.1,0.0086363,0.07039,0.99748,75.352
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 1147 points
+correlation = 0.5361, correlation about mean = 0.03428, overlap = 117.6
+steps = 88, shift = 5.12, angle = 1.48 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.96750863 -0.25267637 0.00903840 420.32443390
+.25283732 -0.96696892 0.03231707 326.79945023
+.00057409 0.03355229 0.99943680 83.42730819
+Axis 0.00244315 0.01674157 0.99985687
+Axis point 189.15990467 189.69330796 0.00000000
+Rotation angle (degrees) 165.35714901
+Shift along axis 89.91341845
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/Td_DFlaB3_analysis.cxs
+> includeMaps true
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #16, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> select subtract #15
+Nothing selected
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #17, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> rename #16-17 id #14
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #16, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #17, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> rename #16-17 id #14
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #16, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> rename #16 id #14
+> color #15 #ff4bf9ff models
+> hide #!15 models
+> show #!15 models
+> select add #14.24
+models selected
+> volume #14.28 level 0.055
+> volume #14.27 level 0.055
+> volume #14.26 level 0.055
+> volume #14.25 level 0.055
+> volume #14.24 level 0.055
+> view matrix models
+> #14.24,0.98747,0.046594,0.15079,-43.085,-0.046809,0.9989,-0.0021227,12.14,-0.15073,-0.0049624,0.98856,40.498
+> select add #14.25
+models selected
+> select add #14.26
+models selected
+> select add #14.27
+models selected
+> select add #14.28
+models selected
+> select add #15
+models selected
+> select subtract #15
+models selected
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14.24,0.98747,0.046594,0.15079,-45.129,-0.046809,0.9989,-0.0021227,-14.224,-0.15073,-0.0049624,0.98856,10.228,#14.25,1,0,0,-2.0449,0,1,0,-26.364,0,0,1,-30.271,#14.26,1,0,0,-2.0449,0,1,0,-26.364,0,0,1,-30.271,#14.27,1,0,0,-2.0449,0,1,0,-26.364,0,0,1,-30.271,#14.28,1,0,0,-2.0449,0,1,0,-26.364,0,0,1,-30.271
+> view matrix models
+> #14.24,0.98747,0.046594,0.15079,-43.32,-0.046809,0.9989,-0.0021227,-17.367,-0.15073,-0.0049624,0.98856,8.0949,#14.25,1,0,0,-0.23512,0,1,0,-29.506,0,0,1,-32.404,#14.26,1,0,0,-0.23512,0,1,0,-29.506,0,0,1,-32.404,#14.27,1,0,0,-0.23512,0,1,0,-29.506,0,0,1,-32.404,#14.28,1,0,0,-0.23512,0,1,0,-29.506,0,0,1,-32.404
+> view matrix models
+> #14.24,0.98747,0.046594,0.15079,-42.331,-0.046809,0.9989,-0.0021227,-16.425,-0.15073,-0.0049624,0.98856,10.255,#14.25,1,0,0,0.75368,0,1,0,-28.564,0,0,1,-30.243,#14.26,1,0,0,0.75368,0,1,0,-28.564,0,0,1,-30.243,#14.27,1,0,0,0.75368,0,1,0,-28.564,0,0,1,-30.243,#14.28,1,0,0,0.75368,0,1,0,-28.564,0,0,1,-30.243
+> fitmap #14.24 inMap #6
+Fit map S126_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 24 points
+correlation = 0.957, correlation about mean = 0.4796, overlap = 14.6
+steps = 48, shift = 1.04, angle = 17.4 degrees
+Position of S126_glycan.mrc (#14.24) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.91410280 0.36062560 0.18537853 -97.57065779
+-0.34931440 0.93251760 -0.09159877 91.25808112
+-0.20590161 0.01897530 0.97838869 22.52446163
+Axis 0.13515416 0.47825982 -0.86775624
+Axis point 184.74940296 318.65442161 0.00000000
+Rotation angle (degrees) 24.14620768
+Shift along axis 10.91225129
+> fitmap #14.25 inMap #6
+Fit map S126_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 24 points
+correlation = 0.9574, correlation about mean = 0.48, overlap = 14.57
+steps = 64, shift = 1.06, angle = 23.2 degrees
+Position of S126_glycan.mrc (#14.25) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.91437947 0.36140110 0.18248132 -97.09623443
+-0.34898951 0.93206936 -0.09722664 92.64409781
+-0.20522306 0.02521797 0.97839028 21.04659493
+Axis 0.14959412 0.47366965 -0.86790475
+Axis point 188.52688553 317.92152731 0.00000000
+Rotation angle (degrees) 24.15811222
+Shift along axis 11.09123161
+> fitmap #14.26 inMap #6
+Fit map S126_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 24 points
+correlation = 0.9574, correlation about mean = 0.48, overlap = 14.57
+steps = 64, shift = 1.06, angle = 23.2 degrees
+Position of S126_glycan.mrc (#14.26) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.91437947 0.36140110 0.18248132 -97.09623443
+-0.34898951 0.93206936 -0.09722664 92.64409781
+-0.20522306 0.02521797 0.97839028 21.04659493
+Axis 0.14959412 0.47366965 -0.86790475
+Axis point 188.52688553 317.92152731 0.00000000
+Rotation angle (degrees) 24.15811222
+Shift along axis 11.09123161
+> fitmap #14.27 inMap #6
+Fit map S126_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 24 points
+correlation = 0.9574, correlation about mean = 0.48, overlap = 14.57
+steps = 64, shift = 1.06, angle = 23.2 degrees
+Position of S126_glycan.mrc (#14.27) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.91437947 0.36140110 0.18248132 -97.09623443
+-0.34898951 0.93206936 -0.09722664 92.64409781
+-0.20522306 0.02521797 0.97839028 21.04659493
+Axis 0.14959412 0.47366965 -0.86790475
+Axis point 188.52688553 317.92152731 0.00000000
+Rotation angle (degrees) 24.15811222
+Shift along axis 11.09123161
+> fitmap #14.28 inMap #6
+Fit map S126_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 24 points
+correlation = 0.9574, correlation about mean = 0.48, overlap = 14.57
+steps = 64, shift = 1.06, angle = 23.2 degrees
+Position of S126_glycan.mrc (#14.28) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.91437947 0.36140110 0.18248132 -97.09623443
+-0.34898951 0.93206936 -0.09722664 92.64409781
+-0.20522306 0.02521797 0.97839028 21.04659493
+Axis 0.14959412 0.47366965 -0.86790475
+Axis point 188.52688553 317.92152731 0.00000000
+Rotation angle (degrees) 24.15811222
+Shift along axis 11.09123161
+> view matrix models
+> #14.24,0.91987,0.33727,0.20023,-98.039,-0.32859,0.9414,-0.076181,82.541,-0.21419,0.0042833,0.97678,26.442,#14.25,0.92014,0.33814,0.19748,-97.619,-0.32825,0.94104,-0.081879,83.922,-0.21352,0.01052,0.97688,24.944,#14.26,0.92014,0.33814,0.19748,-97.619,-0.32825,0.94104,-0.081879,83.922,-0.21352,0.01052,0.97688,24.944,#14.27,0.92014,0.33814,0.19748,-97.619,-0.32825,0.94104,-0.081879,83.922,-0.21352,0.01052,0.97688,24.944,#14.28,0.92014,0.33814,0.19748,-97.619,-0.32825,0.94104,-0.081879,83.922,-0.21352,0.01052,0.97688,24.944
+> select subtract #14.24
+models selected
+> view matrix models
+> #14.25,0.92014,0.33814,0.19748,-83.308,-0.32825,0.94104,-0.081879,74.951,-0.21352,0.01052,0.97688,69.71,#14.26,0.92014,0.33814,0.19748,-83.308,-0.32825,0.94104,-0.081879,74.951,-0.21352,0.01052,0.97688,69.71,#14.27,0.92014,0.33814,0.19748,-83.308,-0.32825,0.94104,-0.081879,74.951,-0.21352,0.01052,0.97688,69.71,#14.28,0.92014,0.33814,0.19748,-83.308,-0.32825,0.94104,-0.081879,74.951,-0.21352,0.01052,0.97688,69.71
+> view matrix models
+> #14.25,0.92014,0.33814,0.19748,-86.712,-0.32825,0.94104,-0.081879,78.498,-0.21352,0.01052,0.97688,81.708,#14.26,0.92014,0.33814,0.19748,-86.712,-0.32825,0.94104,-0.081879,78.498,-0.21352,0.01052,0.97688,81.708,#14.27,0.92014,0.33814,0.19748,-86.712,-0.32825,0.94104,-0.081879,78.498,-0.21352,0.01052,0.97688,81.708,#14.28,0.92014,0.33814,0.19748,-86.712,-0.32825,0.94104,-0.081879,78.498,-0.21352,0.01052,0.97688,81.708
+> view matrix models
+> #14.25,0.92014,0.33814,0.19748,-92.096,-0.32825,0.94104,-0.081879,79.362,-0.21352,0.01052,0.97688,85.654,#14.26,0.92014,0.33814,0.19748,-92.096,-0.32825,0.94104,-0.081879,79.362,-0.21352,0.01052,0.97688,85.654,#14.27,0.92014,0.33814,0.19748,-92.096,-0.32825,0.94104,-0.081879,79.362,-0.21352,0.01052,0.97688,85.654,#14.28,0.92014,0.33814,0.19748,-92.096,-0.32825,0.94104,-0.081879,79.362,-0.21352,0.01052,0.97688,85.654
+> view matrix models
+> #14.25,0.92014,0.33814,0.19748,-97.288,-0.32825,0.94104,-0.081879,77.797,-0.21352,0.01052,0.97688,77.253,#14.26,0.92014,0.33814,0.19748,-97.288,-0.32825,0.94104,-0.081879,77.797,-0.21352,0.01052,0.97688,77.253,#14.27,0.92014,0.33814,0.19748,-97.288,-0.32825,0.94104,-0.081879,77.797,-0.21352,0.01052,0.97688,77.253,#14.28,0.92014,0.33814,0.19748,-97.288,-0.32825,0.94104,-0.081879,77.797,-0.21352,0.01052,0.97688,77.253
+> view matrix models
+> #14.25,0.92014,0.33814,0.19748,-97.123,-0.32825,0.94104,-0.081879,79.341,-0.21352,0.01052,0.97688,76.755,#14.26,0.92014,0.33814,0.19748,-97.123,-0.32825,0.94104,-0.081879,79.341,-0.21352,0.01052,0.97688,76.755,#14.27,0.92014,0.33814,0.19748,-97.123,-0.32825,0.94104,-0.081879,79.341,-0.21352,0.01052,0.97688,76.755,#14.28,0.92014,0.33814,0.19748,-97.123,-0.32825,0.94104,-0.081879,79.341,-0.21352,0.01052,0.97688,76.755
+> view matrix models
+> #14.25,0.92014,0.33814,0.19748,-97.136,-0.32825,0.94104,-0.081879,79.817,-0.21352,0.01052,0.97688,76.785,#14.26,0.92014,0.33814,0.19748,-97.136,-0.32825,0.94104,-0.081879,79.817,-0.21352,0.01052,0.97688,76.785,#14.27,0.92014,0.33814,0.19748,-97.136,-0.32825,0.94104,-0.081879,79.817,-0.21352,0.01052,0.97688,76.785,#14.28,0.92014,0.33814,0.19748,-97.136,-0.32825,0.94104,-0.081879,79.817,-0.21352,0.01052,0.97688,76.785
+> view matrix models
+> #14.25,0.92014,0.33814,0.19748,-96.886,-0.32825,0.94104,-0.081879,80.369,-0.21352,0.01052,0.97688,76.905,#14.26,0.92014,0.33814,0.19748,-96.886,-0.32825,0.94104,-0.081879,80.369,-0.21352,0.01052,0.97688,76.905,#14.27,0.92014,0.33814,0.19748,-96.886,-0.32825,0.94104,-0.081879,80.369,-0.21352,0.01052,0.97688,76.905,#14.28,0.92014,0.33814,0.19748,-96.886,-0.32825,0.94104,-0.081879,80.369,-0.21352,0.01052,0.97688,76.905
+> select subtract #14.25
+models selected
+> view matrix models
+> #14.26,0.92014,0.33814,0.19748,-96.972,-0.32825,0.94104,-0.081879,80.842,-0.21352,0.01052,0.97688,129.17,#14.27,0.92014,0.33814,0.19748,-96.972,-0.32825,0.94104,-0.081879,80.842,-0.21352,0.01052,0.97688,129.17,#14.28,0.92014,0.33814,0.19748,-96.972,-0.32825,0.94104,-0.081879,80.842,-0.21352,0.01052,0.97688,129.17
+> view matrix models
+> #14.26,0.92014,0.33814,0.19748,-98.83,-0.32825,0.94104,-0.081879,80.956,-0.21352,0.01052,0.97688,127.46,#14.27,0.92014,0.33814,0.19748,-98.83,-0.32825,0.94104,-0.081879,80.956,-0.21352,0.01052,0.97688,127.46,#14.28,0.92014,0.33814,0.19748,-98.83,-0.32825,0.94104,-0.081879,80.956,-0.21352,0.01052,0.97688,127.46
+> view matrix models
+> #14.26,0.92014,0.33814,0.19748,-100.43,-0.32825,0.94104,-0.081879,81.214,-0.21352,0.01052,0.97688,129.53,#14.27,0.92014,0.33814,0.19748,-100.43,-0.32825,0.94104,-0.081879,81.214,-0.21352,0.01052,0.97688,129.53,#14.28,0.92014,0.33814,0.19748,-100.43,-0.32825,0.94104,-0.081879,81.214,-0.21352,0.01052,0.97688,129.53
+> view matrix models
+> #14.26,0.92014,0.33814,0.19748,-101.41,-0.32825,0.94104,-0.081879,81.677,-0.21352,0.01052,0.97688,129.05,#14.27,0.92014,0.33814,0.19748,-101.41,-0.32825,0.94104,-0.081879,81.677,-0.21352,0.01052,0.97688,129.05,#14.28,0.92014,0.33814,0.19748,-101.41,-0.32825,0.94104,-0.081879,81.677,-0.21352,0.01052,0.97688,129.05
+> view matrix models
+> #14.26,0.92014,0.33814,0.19748,-101.62,-0.32825,0.94104,-0.081879,82.019,-0.21352,0.01052,0.97688,128.71,#14.27,0.92014,0.33814,0.19748,-101.62,-0.32825,0.94104,-0.081879,82.019,-0.21352,0.01052,0.97688,128.71,#14.28,0.92014,0.33814,0.19748,-101.62,-0.32825,0.94104,-0.081879,82.019,-0.21352,0.01052,0.97688,128.71
+> select subtract #14.26
+models selected
+> view matrix models
+> #14.27,0.92014,0.33814,0.19748,-71.434,-0.32825,0.94104,-0.081879,70.181,-0.21352,0.01052,0.97688,-18.232,#14.28,0.92014,0.33814,0.19748,-71.434,-0.32825,0.94104,-0.081879,70.181,-0.21352,0.01052,0.97688,-18.232
+> view matrix models
+> #14.27,0.92014,0.33814,0.19748,-97.786,-0.32825,0.94104,-0.081879,84.269,-0.21352,0.01052,0.97688,-33.522,#14.28,0.92014,0.33814,0.19748,-97.786,-0.32825,0.94104,-0.081879,84.269,-0.21352,0.01052,0.97688,-33.522
+> view matrix models
+> #14.27,0.92014,0.33814,0.19748,-99.379,-0.32825,0.94104,-0.081879,85.866,-0.21352,0.01052,0.97688,-29.348,#14.28,0.92014,0.33814,0.19748,-99.379,-0.32825,0.94104,-0.081879,85.866,-0.21352,0.01052,0.97688,-29.348
+> view matrix models
+> #14.27,0.92014,0.33814,0.19748,-99.593,-0.32825,0.94104,-0.081879,86.139,-0.21352,0.01052,0.97688,-29.461,#14.28,0.92014,0.33814,0.19748,-99.593,-0.32825,0.94104,-0.081879,86.139,-0.21352,0.01052,0.97688,-29.461
+> view matrix models
+> #14.27,0.92014,0.33814,0.19748,-99.593,-0.32825,0.94104,-0.081879,86.008,-0.21352,0.01052,0.97688,-29.738,#14.28,0.92014,0.33814,0.19748,-99.593,-0.32825,0.94104,-0.081879,86.008,-0.21352,0.01052,0.97688,-29.738
+> select subtract #14.27
+models selected
+> view matrix models
+> #14.28,0.92014,0.33814,0.19748,-104.01,-0.32825,0.94104,-0.081879,85.314,-0.21352,0.01052,0.97688,-78.777
+> view matrix models
+> #14.28,0.92014,0.33814,0.19748,-100.85,-0.32825,0.94104,-0.081879,84.987,-0.21352,0.01052,0.97688,-83.114
+> view matrix models
+> #14.28,0.92014,0.33814,0.19748,-100.06,-0.32825,0.94104,-0.081879,85.017,-0.21352,0.01052,0.97688,-79.883
+> view matrix models
+> #14.28,0.92014,0.33814,0.19748,-98.317,-0.32825,0.94104,-0.081879,84.158,-0.21352,0.01052,0.97688,-81.822
+> fitmap #14.28 inMap #6
+Fit map S126_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 24 points
+correlation = 0.9657, correlation about mean = 0.6151, overlap = 14.5
+steps = 72, shift = 2.14, angle = 39.3 degrees
+Position of S126_glycan.mrc (#14.28) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.89945232 0.10256322 -0.42481327 107.81520845
+-0.11136382 0.99377109 0.00413810 0.03261153
+.42259156 0.04358681 0.90527154 -224.09250141
+Axis 0.04509040 -0.96859492 -0.24452143
+Axis point 523.47937495 0.00000000 123.56498029
+Rotation angle (degrees) 25.94067347
+Shift along axis 59.62526256
+> view matrix models
+> #14.28,0.90735,0.078091,-0.41307,106.55,-0.084186,0.99644,0.0034572,-7.5095,0.41187,0.031638,0.91069,-221.29
+> view matrix models
+> #14.28,0.90735,0.078091,-0.41307,107.22,-0.084186,0.99644,0.0034572,-7.8663,0.41187,0.031638,0.91069,-222.32
+> view matrix models
+> #14.28,0.90735,0.078091,-0.41307,107.71,-0.084186,0.99644,0.0034572,-8.6197,0.41187,0.031638,0.91069,-221.77
+> fitmap #14.28 inMap #6
+Fit map S126_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 24 points
+correlation = 0.9657, correlation about mean = 0.6158, overlap = 14.5
+steps = 68, shift = 3.15, angle = 0.0283 degrees
+Position of S126_glycan.mrc (#14.28) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.89962939 0.10250803 -0.42445149 107.69135753
+-0.11117918 0.99379080 0.00436204 -0.07468544
+.42226313 0.04326595 0.90544017 -223.98254663
+Axis 0.04450591 -0.96863814 -0.24445731
+Axis point 523.60808326 0.00000000 123.64917774
+Rotation angle (degrees) 25.91673195
+Shift along axis 59.61941696
+> view matrix models
+> #14.28,0.90751,0.078032,-0.41271,107.14,-0.084001,0.99646,0.0036919,-8.9694,0.41154,0.031317,0.91085,-220.45
+> view matrix models
+> #14.28,0.90751,0.078032,-0.41271,107.69,-0.084001,0.99646,0.0036919,-8.92,0.41154,0.031317,0.91085,-221.4
+> select add #14
+models selected
+> select subtract #14
+Nothing selected
+> select add #14
+models selected
+> color #14.24 #ff4bf9ff models
+> color #14.25 #ff4bf9ff models
+> color #14.26 #ff4bf9ff models
+> color #14.27 #ff4bf9ff models
+> color #14.28 #ff4bf9ff models
+> select subtract #14
+Nothing selected
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #16, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #17, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> select add #16
+models selected
+> volume #16 level 0.055
+> volume #17 level 0.055
+> select add #17
+models selected
+> view matrix models
+> #16,1,0,0,-103.92,0,1,0,62.599,0,0,1,-141.6,#17,1,0,0,-103.92,0,1,0,62.599,0,0,1,-141.6
+> view matrix models
+> #16,1,0,0,-133.93,0,1,0,-17.371,0,0,1,-118.14,#17,1,0,0,-133.93,0,1,0,-17.371,0,0,1,-118.14
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #16,0.62959,-0.66017,-0.40963,192.17,0.64147,0.14424,0.75346,-178.53,-0.43833,-0.73714,0.51429,258.85,#17,0.62959,-0.66017,-0.40963,192.17,0.64147,0.14424,0.75346,-178.53,-0.43833,-0.73714,0.51429,258.85
+> view matrix models
+> #16,0.77572,-0.59618,-0.20695,94.285,0.33977,0.11822,0.93305,-143.12,-0.5318,-0.7941,0.29427,346.65,#17,0.77572,-0.59618,-0.20695,94.285,0.33977,0.11822,0.93305,-143.12,-0.5318,-0.7941,0.29427,346.65
+> view matrix models
+> #16,0.807,-0.51804,-0.28354,89.007,0.36218,0.054911,0.93049,-134.84,-0.46646,-0.85359,0.23193,358.15,#17,0.807,-0.51804,-0.28354,89.007,0.36218,0.054911,0.93049,-134.84,-0.46646,-0.85359,0.23193,358.15
+> ui mousemode right "translate selected models"
+> view matrix models
+> #16,0.807,-0.51804,-0.28354,98.311,0.36218,0.054911,0.93049,-124.08,-0.46646,-0.85359,0.23193,365,#17,0.807,-0.51804,-0.28354,98.311,0.36218,0.054911,0.93049,-124.08,-0.46646,-0.85359,0.23193,365
+> view matrix models
+> #16,0.807,-0.51804,-0.28354,112.93,0.36218,0.054911,0.93049,-142.81,-0.46646,-0.85359,0.23193,353.37,#17,0.807,-0.51804,-0.28354,112.93,0.36218,0.054911,0.93049,-142.81,-0.46646,-0.85359,0.23193,353.37
+> view matrix models
+> #16,0.807,-0.51804,-0.28354,112.94,0.36218,0.054911,0.93049,-142.72,-0.46646,-0.85359,0.23193,353.38,#17,0.807,-0.51804,-0.28354,112.94,0.36218,0.054911,0.93049,-142.72,-0.46646,-0.85359,0.23193,353.38
+> ui mousemode right select
+> select #15
+models selected
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,-0.97347,-0.22782,0.021116,414.88,0.22855,-0.97256,0.04351,332.55,0.010624,0.047182,0.99883,79.274
+> view matrix models
+> #15,-0.97347,-0.22782,0.021116,414.33,0.22855,-0.97256,0.04351,332.84,0.010624,0.047182,0.99883,79.107
+> view matrix models
+> #15,-0.97347,-0.22782,0.021116,412.67,0.22855,-0.97256,0.04351,332.35,0.010624,0.047182,0.99883,80.16
+> view matrix models
+> #15,-0.97347,-0.22782,0.021116,413.89,0.22855,-0.97256,0.04351,332.7,0.010624,0.047182,0.99883,79.392
+> view matrix models
+> #15,-0.97347,-0.22782,0.021116,413.02,0.22855,-0.97256,0.04351,331.38,0.010624,0.047182,0.99883,78.597
+> view matrix models
+> #15,-0.97347,-0.22782,0.021116,413.86,0.22855,-0.97256,0.04351,330.62,0.010624,0.047182,0.99883,79.163
+> select subtract #15
+Nothing selected
+> select add #16
+models selected
+> view matrix models
+> #16,0.807,-0.51804,-0.28354,112.91,0.36218,0.054911,0.93049,-142.47,-0.46646,-0.85359,0.23193,353.41
+> select add #17
+models selected
+> view matrix models
+> #16,0.807,-0.51804,-0.28354,113.29,0.36218,0.054911,0.93049,-139.41,-0.46646,-0.85359,0.23193,355.55,#17,0.807,-0.51804,-0.28354,113.33,0.36218,0.054911,0.93049,-139.66,-0.46646,-0.85359,0.23193,355.52
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #16,0.4891,-0.85669,-0.16389,231.94,0.3742,0.036364,0.92664,-137.57,-0.78788,-0.51454,0.33836,337.83,#17,0.4891,-0.85669,-0.16389,231.96,0.3742,0.036364,0.92664,-137.81,-0.78788,-0.51454,0.33836,337.78
+> view matrix models
+> #16,0.31446,-0.93584,-0.15912,289.71,0.4315,-0.0083942,0.90208,-136.3,-0.84553,-0.35233,0.40117,303.06,#17,0.31446,-0.93584,-0.15912,289.74,0.4315,-0.0083942,0.90208,-136.55,-0.84553,-0.35233,0.40117,303
+> view matrix models
+> #16,0.31124,-0.92802,-0.20473,299.9,0.44407,-0.048443,0.89468,-129.28,-0.8402,-0.36938,0.39703,306.3,#17,0.31124,-0.92802,-0.20473,299.94,0.44407,-0.048443,0.89468,-129.52,-0.8402,-0.36938,0.39703,306.24
+> ui mousemode right "translate selected models"
+> view matrix models
+> #16,0.31124,-0.92802,-0.20473,302.39,0.44407,-0.048443,0.89468,-131.46,-0.8402,-0.36938,0.39703,305.41,#17,0.31124,-0.92802,-0.20473,302.43,0.44407,-0.048443,0.89468,-131.71,-0.8402,-0.36938,0.39703,305.35
+> view matrix models
+> #16,0.31124,-0.92802,-0.20473,301.53,0.44407,-0.048443,0.89468,-129.55,-0.8402,-0.36938,0.39703,305.83,#17,0.31124,-0.92802,-0.20473,301.57,0.44407,-0.048443,0.89468,-129.79,-0.8402,-0.36938,0.39703,305.77
+> color #16 #ff4bf9ff models
+> color #17 #ff4bf9ff models
+> view matrix models
+> #16,0.31124,-0.92802,-0.20473,301.79,0.44407,-0.048443,0.89468,-129.48,-0.8402,-0.36938,0.39703,305.63,#17,0.31124,-0.92802,-0.20473,301.83,0.44407,-0.048443,0.89468,-129.72,-0.8402,-0.36938,0.39703,305.58
+> select subtract #16
+models selected
+> view matrix models
+> #17,0.31124,-0.92802,-0.20473,288.88,0.44407,-0.048443,0.89468,-129.57,-0.8402,-0.36938,0.39703,259.3
+> view matrix models
+> #17,0.31124,-0.92802,-0.20473,301.36,0.44407,-0.048443,0.89468,-133.29,-0.8402,-0.36938,0.39703,255.81
+> view matrix models
+> #17,0.31124,-0.92802,-0.20473,301.55,0.44407,-0.048443,0.89468,-132.63,-0.8402,-0.36938,0.39703,257.05
+> select subtract #17
+Nothing selected
+> rename #16-17 id #14
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #16, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> hide #!14 models
+> hide #!16 models
+> ui tool show "Map Eraser"
+> select add #17
+model selected
+> hide #5 models
+> hide #!6 models
+> show #!6 models
+> hide #!6 models
+> volume erase #15 center 135.66,184.81,172.76 radius 8.3518
+> close #17
+> show #!6 models
+> show #5 models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan.mrc
+Opened S126_glycan.mrc as #17, grid size 7,9,8, pixel 1.07,1.07,1.07, shown at
+level 1.03, step 1, values float32
+> select add #15
+models selected
+> select subtract #15
+Nothing selected
+> show #!16 models
+> select add #16
+models selected
+> volume #16 level 0.055
+> volume #17 level 0.055
+> ui mousemode right "translate selected models"
+> select add #17
+models selected
+> view matrix models
+> #16,1,0,0,-118.56,0,1,0,-114.7,0,0,1,-7.439,#17,1,0,0,-118.56,0,1,0,-114.7,0,0,1,-7.439
+> view matrix models
+> #16,1,0,0,-154.33,0,1,0,-26.302,0,0,1,-69.084,#17,1,0,0,-154.33,0,1,0,-26.302,0,0,1,-69.084
+> show #!14 models
+> view matrix models
+> #16,1,0,0,-117.76,0,1,0,-23.795,0,0,1,-49.628,#17,1,0,0,-117.76,0,1,0,-23.795,0,0,1,-49.628
+> view matrix models
+> #16,1,0,0,-114.47,0,1,0,-19.701,0,0,1,-70.657,#17,1,0,0,-114.47,0,1,0,-19.701,0,0,1,-70.657
+> view matrix models
+> #16,1,0,0,-112.27,0,1,0,-18.096,0,0,1,-66.826,#17,1,0,0,-112.27,0,1,0,-18.096,0,0,1,-66.826
+> view matrix models
+> #16,1,0,0,-109.34,0,1,0,-19.14,0,0,1,-69.421,#17,1,0,0,-109.34,0,1,0,-19.14,0,0,1,-69.421
+> fitmap #16 inMap #6
+Fit map S126_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 24 points
+correlation = 0.976, correlation about mean = 0.7633, overlap = 18.48
+steps = 48, shift = 0.86, angle = 67.9 degrees
+Position of S126_glycan.mrc (#16) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.62526807 -0.51794520 -0.58375732 232.51679115
+-0.07342853 0.70564985 -0.70474573 231.04033206
+.77694793 0.48351944 0.40318836 -214.48526578
+Axis 0.63871490 -0.73140469 0.23893608
+Axis point 415.40822574 0.00000000 210.11967457
+Rotation angle (degrees) 68.46600862
+Shift along axis -71.72031203
+> color #16 #ff4bf9ff models
+> select subtract #16
+models selected
+> view matrix models #17,1,0,0,-66.019,0,1,0,-42.658,0,0,1,-110.42
+> view matrix models #17,1,0,0,-102.38,0,1,0,-53.77,0,0,1,-145.47
+> view matrix models #17,1,0,0,-107.76,0,1,0,-45.495,0,0,1,-140.64
+> view matrix models #17,1,0,0,-112.74,0,1,0,-56.234,0,0,1,-102.37
+> view matrix models #17,1,0,0,-96.865,0,1,0,-48.632,0,0,1,-94.196
+> ui mousemode right select
+> select #15
+models selected
+> select clear
+> ui mousemode right "translate selected models"
+> select add #17
+models selected
+> select subtract #17
+Nothing selected
+> select add #17
+models selected
+> fitmap #17 inMap #15
+Fit map S126_glycan.mrc in map volume sum using 24 points
+correlation = 0.9717, correlation about mean = 0.8212, overlap = 12.15
+steps = 84, shift = 2.72, angle = 89.6 degrees
+Position of S126_glycan.mrc (#17) relative to volume sum (#15) coordinates:
+Matrix rotation and translation
+-0.31254849 0.94963414 0.02254862 92.09127935
+-0.37177236 -0.10044643 -0.92287368 565.53075429
+-0.87412743 -0.29682573 0.38444211 237.17528525
+Axis 0.36498954 0.52276728 -0.77038757
+Axis point 281.94926999 349.04502824 -0.00000000
+Rotation angle (degrees) 120.94910104
+Shift along axis 146.53643602
+> view matrix models
+> #17,0.3705,-0.90783,0.19642,191.37,0.2521,0.30182,0.91943,-191.74,-0.89397,-0.29113,0.34069,295.09
+> view matrix models
+> #17,0.3705,-0.90783,0.19642,199.1,0.2521,0.30182,0.91943,-187.58,-0.89397,-0.29113,0.34069,293.78
+> view matrix models
+> #17,0.3705,-0.90783,0.19642,199.75,0.2521,0.30182,0.91943,-188.12,-0.89397,-0.29113,0.34069,293.83
+> view matrix models
+> #17,0.3705,-0.90783,0.19642,199.41,0.2521,0.30182,0.91943,-187.74,-0.89397,-0.29113,0.34069,293.5
+> view matrix models
+> #17,0.3705,-0.90783,0.19642,199.31,0.2521,0.30182,0.91943,-188.12,-0.89397,-0.29113,0.34069,292.88
+> view matrix models
+> #17,0.3705,-0.90783,0.19642,198.71,0.2521,0.30182,0.91943,-188.53,-0.89397,-0.29113,0.34069,293.36
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #17,0.317,-0.93987,0.1271,235.15,0.32577,0.23376,0.91609,-191.56,-0.89072,-0.249,0.38029,274.26
+> view matrix models
+> #17,0.14258,-0.98853,-0.049755,330.49,0.49756,0.028128,0.86698,-178.9,-0.85563,-0.14837,0.49586,216.9
+> view matrix models
+> #17,0.064141,-0.96617,-0.24979,393.35,0.57252,-0.16939,0.8022,-140.55,-0.81738,-0.19446,0.54228,205.91
+> view matrix models
+> #17,0.067074,-0.95636,-0.28439,398.97,0.48176,-0.21856,0.84861,-119.49,-0.87373,-0.19393,0.44608,242.8
+> ui mousemode right "translate selected models"
+> view matrix models
+> #17,0.067074,-0.95636,-0.28439,399.24,0.48176,-0.21856,0.84861,-120.14,-0.87373,-0.19393,0.44608,243.3
+> select subtract #17
+Nothing selected
+> color #17 #ff4bf9ff models
+> rename #16-17 id #14
+> vop add #14,15
+Opened volume sum as #16, grid size 134,140,284, pixel 1.07,1.07,1.07, shown
+at step 1, values float32
+> hide #!14 models
+> hide #!16 models
+> show #!16 models
+> color #16 #ff4bf9ff models
+> close #17
+> hide #!16 models
+> show #!16 models
+> close #14-15
+> show #3 models
+> hide #3 models
+> show #3 models
+> show #!30 models
+> color #16 #ff1721ff models
+> rename #16 S126_glycan_all
+> rename #16 id #31
+> hide #3 models
+> show #3 models
+> hide #3 models
+> hide #!31 models
+> hide #!30 models
+> color #5 #a9fab5ff
+> color #5 #fff6b6ff
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/T137_glycan.mrc
+Opened T137_glycan.mrc as #14, grid size 11,10,9, pixel 1.07,1.07,1.07, shown
+at level 1.11, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/T137_glycan.mrc
+Opened T137_glycan.mrc as #15, grid size 11,10,9, pixel 1.07,1.07,1.07, shown
+at level 1.11, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/T137_glycan.mrc
+Opened T137_glycan.mrc as #16, grid size 11,10,9, pixel 1.07,1.07,1.07, shown
+at level 1.11, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/T137_glycan.mrc
+Opened T137_glycan.mrc as #17, grid size 11,10,9, pixel 1.07,1.07,1.07, shown
+at level 1.11, step 1, values float32
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/FlaB1_core_long.pdb
+> models #5
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S115_glycan_all.mrc
+> models #30
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S126_glycan_all.mrc
+> models #31
+> close #200
+> show #!18 models
+> rename #14-18 id #200
+> select #5/B-z,1-9,0,AA-Al:137
+atoms, 594 bonds, 99 residues, 1 model selected
+> select #5/B-z,1-9,0,AA-Al:137
+atoms, 594 bonds, 99 residues, 1 model selected
+> volume #200.1 level 0.055
+> volume #200.2 level 0.055
+> volume #200.3 level 0.055
+> volume #200.4 level 0.055
+> ui tool show "Volume Viewer"
+> select add #200.2
+atoms, 594 bonds, 99 residues, 3 models selected
+> select add #200.3
+atoms, 594 bonds, 99 residues, 5 models selected
+> select add #200.4
+atoms, 594 bonds, 99 residues, 7 models selected
+> select add #200.5
+atoms, 594 bonds, 99 residues, 9 models selected
+> ui mousemode right select
+> select clear
+> select add #200.2
+models selected
+> select add #200.3
+models selected
+> select add #200.4
+models selected
+> select add #200.5
+models selected
+> ui mousemode right "translate selected models"
+> view matrix models
+> #200.2,1,0,0,-0.69868,0,1,0,-0.12505,0,0,1,-0.58385,#200.3,1,0,0,-0.69868,0,1,0,-0.12505,0,0,1,-0.58385,#200.4,1,0,0,-0.69868,0,1,0,-0.12505,0,0,1,-0.58385,#200.5,0.9996,-0.025113,0.012944,1,0.02497,0.99963,0.011123,-6.1084,-0.013218,-0.010796,0.99985,3.385
+> select subtract #200.3
+models selected
+> select subtract #200.2
+models selected
+> select subtract #200.5
+models selected
+> view matrix models #200.4,1,0,0,-0.50828,0,1,0,-0.064736,0,0,1,-0.40575
+> select subtract #200.4
+Nothing selected
+> select add #200.1
+models selected
+> select subtract #200.1
+Nothing selected
+> select add #200.2
+models selected
+> select add #200.3
+models selected
+> select add #200.4
+models selected
+> select add #200.5
+models selected
+> fitmap #200.1 inMap #6
+Fit map T137_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 45 points
+correlation = 0.9987, correlation about mean = 0.9861, overlap = 38.62
+steps = 68, shift = 1.19, angle = 4.16 degrees
+Position of T137_glycan.mrc (#200.1) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99936040 -0.01560370 0.03217620 -5.38616630
+.01719297 0.99861508 -0.04972243 10.00155917
+-0.03135579 0.05024383 0.99824465 -2.75174247
+Axis 0.81337415 0.51692720 0.26684970
+Axis point 0.00000000 62.00605588 198.85097991
+Rotation angle (degrees) 3.52313635
+Shift along axis 0.05480786
+> fitmap #200.1 inMap #6
+Fit map T137_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 45 points
+correlation = 0.9987, correlation about mean = 0.9855, overlap = 38.61
+steps = 40, shift = 0.00424, angle = 0.0432 degrees
+Position of T137_glycan.mrc (#200.1) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99934296 -0.01627076 0.03238688 -5.33256114
+.01786056 0.99861840 -0.04941950 9.82668156
+-0.03153804 0.04996547 0.99825288 -2.68122883
+Axis 0.80801553 0.51971967 0.27749300
+Axis point 0.00000000 60.83662788 196.57031923
+Rotation angle (degrees) 3.52588213
+Shift along axis 0.05430523
+> fitmap #200.1 inMap #6
+Fit map T137_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 45 points
+correlation = 0.9987, correlation about mean = 0.9857, overlap = 38.62
+steps = 44, shift = 0.00161, angle = 0.0256 degrees
+Position of T137_glycan.mrc (#200.1) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99934380 -0.01586022 0.03256413 -5.44013795
+.01745979 0.99862454 -0.04943879 9.88963794
+-0.03173523 0.04997491 0.99824615 -2.65358134
+Axis 0.80827579 0.52278127 0.27090585
+Axis point 0.00000000 60.33287283 197.78725049
+Rotation angle (degrees) 3.52576541
+Shift along axis 0.05411498
+> select #5/B-z,1-9,0,AA-Al:137
+atoms, 594 bonds, 99 residues, 1 model selected
+> select #5/B-z,1-9,0,AA-Al:137
+atoms, 594 bonds, 99 residues, 1 model selected
+> color sel cyan
+> ui mousemode right select
+> select clear
+> select add #200.2
+models selected
+> select add #200.3
+models selected
+> select add #200.4
+models selected
+> select add #200.5
+models selected
+> ui mousemode right "translate selected models"
+> hide #!6 models
+> show #!6 models
+> hide #!6 models
+> show #!6 models
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #200.2,1,0,0,9.3408,0,1,0,7.5951,0,0,1,51.422,#200.3,1,0,0,9.3408,0,1,0,7.5951,0,0,1,51.422,#200.4,1,0,0,9.5312,0,1,0,7.6554,0,0,1,51.6,#200.5,0.9996,-0.025113,0.012944,11.039,0.02497,0.99963,0.011123,1.6117,-0.013218,-0.010796,0.99985,55.391
+> view matrix models
+> #200.2,1,0,0,-1.6626,0,1,0,-1.172,0,0,1,49.54,#200.3,1,0,0,-1.6626,0,1,0,-1.172,0,0,1,49.54,#200.4,1,0,0,-1.4722,0,1,0,-1.1117,0,0,1,49.718,#200.5,0.9996,-0.025113,0.012944,0.036119,0.02497,0.99963,0.011123,-7.1553,-0.013218,-0.010796,0.99985,53.508
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #200.2,1,0,0,-0.36764,0,1,0,0.35296,0,0,1,54.896,#200.3,1,0,0,-0.36764,0,1,0,0.35296,0,0,1,54.896,#200.4,1,0,0,-0.17724,0,1,0,0.41327,0,0,1,55.074,#200.5,0.9996,-0.025113,0.012944,1.3311,0.02497,0.99963,0.011123,-5.6304,-0.013218,-0.010796,0.99985,58.865
+> view matrix models
+> #200.2,1,0,0,-1.841,0,1,0,0.76184,0,0,1,54.148,#200.3,1,0,0,-1.841,0,1,0,0.76184,0,0,1,54.148,#200.4,1,0,0,-1.6506,0,1,0,0.82215,0,0,1,54.326,#200.5,0.9996,-0.025113,0.012944,-0.14228,0.02497,0.99963,0.011123,-5.2215,-0.013218,-0.010796,0.99985,58.117
+> view matrix models
+> #200.2,1,0,0,-0.48531,0,1,0,0.24738,0,0,1,53.7,#200.3,1,0,0,-0.48531,0,1,0,0.24738,0,0,1,53.7,#200.4,1,0,0,-0.29491,0,1,0,0.30769,0,0,1,53.878,#200.5,0.9996,-0.025113,0.012944,1.2134,0.02497,0.99963,0.011123,-5.736,-0.013218,-0.010796,0.99985,57.669
+> view matrix models
+> #200.2,1,0,0,-0.25917,0,1,0,0.090836,0,0,1,53.455,#200.3,1,0,0,-0.25917,0,1,0,0.090836,0,0,1,53.455,#200.4,1,0,0,-0.068765,0,1,0,0.15115,0,0,1,53.633,#200.5,0.9996,-0.025113,0.012944,1.4395,0.02497,0.99963,0.011123,-5.8925,-0.013218,-0.010796,0.99985,57.424
+> view matrix models
+> #200.2,1,0,0,-1.0706,0,1,0,1.2186,0,0,1,53.56,#200.3,1,0,0,-1.0706,0,1,0,1.2186,0,0,1,53.56,#200.4,1,0,0,-0.88024,0,1,0,1.2789,0,0,1,53.738,#200.5,0.9996,-0.025113,0.012944,0.62807,0.02497,0.99963,0.011123,-4.7648,-0.013218,-0.010796,0.99985,57.529
+> view matrix models
+> #200.2,1,0,0,-1.077,0,1,0,0.84272,0,0,1,53.053,#200.3,1,0,0,-1.077,0,1,0,0.84272,0,0,1,53.053,#200.4,1,0,0,-0.88663,0,1,0,0.90303,0,0,1,53.231,#200.5,0.9996,-0.025113,0.012944,0.62168,0.02497,0.99963,0.011123,-5.1406,-0.013218,-0.010796,0.99985,57.021
+> select subtract #200.2
+models selected
+> hide #!6 models
+> select add #200.2
+models selected
+> view matrix models
+> #200.2,1,0,0,-1.3347,0,1,0,1.4052,0,0,1,51.02,#200.3,1,0,0,-1.3347,0,1,0,1.4052,0,0,1,51.02,#200.4,1,0,0,-1.1443,0,1,0,1.4655,0,0,1,51.198,#200.5,0.9996,-0.025113,0.012944,0.36402,0.02497,0.99963,0.011123,-4.5782,-0.013218,-0.010796,0.99985,54.989
+> view matrix models
+> #200.2,1,0,0,-1.152,0,1,0,1.0987,0,0,1,50.89,#200.3,1,0,0,-1.152,0,1,0,1.0987,0,0,1,50.89,#200.4,1,0,0,-0.96156,0,1,0,1.159,0,0,1,51.068,#200.5,0.9996,-0.025113,0.012944,0.54675,0.02497,0.99963,0.011123,-4.8847,-0.013218,-0.010796,0.99985,54.858
+> show #!6 models
+> view matrix models
+> #200.2,1,0,0,-0.85005,0,1,0,0.93594,0,0,1,51.046,#200.3,1,0,0,-0.85005,0,1,0,0.93594,0,0,1,51.046,#200.4,1,0,0,-0.65964,0,1,0,0.99625,0,0,1,51.224,#200.5,0.9996,-0.025113,0.012944,0.84867,0.02497,0.99963,0.011123,-5.0474,-0.013218,-0.010796,0.99985,55.015
+> view matrix models
+> #200.2,1,0,0,-0.89718,0,1,0,1.359,0,0,1,51.265,#200.3,1,0,0,-0.89718,0,1,0,1.359,0,0,1,51.265,#200.4,1,0,0,-0.70678,0,1,0,1.4193,0,0,1,51.443,#200.5,0.9996,-0.025113,0.012944,0.80153,0.02497,0.99963,0.011123,-4.6243,-0.013218,-0.010796,0.99985,55.234
+> select subtract #200.2
+models selected
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #200.3,1,0,0,23.968,0,1,0,8.2773,0,0,1,-44.341,#200.4,1,0,0,24.159,0,1,0,8.3376,0,0,1,-44.163,#200.5,0.9996,-0.025113,0.012944,25.667,0.02497,0.99963,0.011123,2.2939,-0.013218,-0.010796,0.99985,-40.372
+> view matrix models
+> #200.3,1,0,0,5.2146,0,1,0,0.19354,0,0,1,-64.476,#200.4,1,0,0,5.405,0,1,0,0.25385,0,0,1,-64.298,#200.5,0.9996,-0.025113,0.012944,6.9133,0.02497,0.99963,0.011123,-5.7898,-0.013218,-0.010796,0.99985,-60.507
+> view matrix models
+> #200.3,1,0,0,4.207,0,1,0,-0.12056,0,0,1,-50.042,#200.4,1,0,0,4.3974,0,1,0,-0.060252,0,0,1,-49.863,#200.5,0.9996,-0.025113,0.012944,5.9057,0.02497,0.99963,0.011123,-6.1039,-0.013218,-0.010796,0.99985,-46.073
+> fitmap #200.2 inMap #6
+Fit map T137_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 45 points
+correlation = 0.9191, correlation about mean = 0.582, overlap = 16.05
+steps = 88, shift = 0.429, angle = 39.9 degrees
+Position of T137_glycan.mrc (#200.2) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.84630256 -0.21175959 0.48880452 -68.52018701
+.38132298 0.88155482 -0.27830538 32.02750595
+-0.37197414 0.42192295 0.82681090 83.25913495
+Axis 0.55654249 0.68414811 0.47138288
+Axis point 102.21671179 0.00000000 198.53441880
+Rotation angle (degrees) 38.98286467
+Shift along axis 23.02409347
+> select subtract #200.3
+models selected
+> select subtract #200.4
+models selected
+> select subtract #200.5
+Nothing selected
+> select add #200.2
+models selected
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #200.2,0.91939,-0.2442,0.30836,-27.784,0.23128,0.96972,0.078389,-47.214,-0.31817,-0.00075159,0.94803,110.56
+> view matrix models
+> #200.2,0.95256,0.067577,0.29674,-77.508,-0.053984,0.99709,-0.053775,22.77,-0.29952,0.035205,0.95344,101
+> view matrix models
+> #200.2,0.9708,-0.012407,0.23956,-53.729,0.055344,0.9833,-0.17335,38.633,-0.23341,0.18155,0.95528,68.51
+> view matrix models
+> #200.2,0.99192,-0.023338,0.12472,-26.665,0.065002,0.93762,-0.34153,85.903,-0.10897,0.34688,0.93156,30.976
+> view matrix models
+> #200.2,0.99872,-0.050495,-0.001594,7.8056,0.04777,0.95414,-0.29552,74.472,0.016443,0.29506,0.95534,14.811
+> view matrix models
+> #200.2,0.99379,0.11111,0.0057556,-18.067,-0.1071,0.9694,-0.22088,76.133,-0.030121,0.21889,0.97528,28.306
+> view matrix models
+> #200.2,0.99227,0.10594,-0.064657,0.39343,-0.1151,0.98035,-0.16022,60.586,0.046414,0.16642,0.98496,22.835
+> ui mousemode right "translate selected models"
+> view matrix models
+> #200.2,0.99227,0.10594,-0.064657,0.62696,-0.1151,0.98035,-0.16022,60.496,0.046414,0.16642,0.98496,22.99
+> select subtract #200.2
+Nothing selected
+> select add #200.3
+models selected
+> select add #200.4
+models selected
+> select add #200.5
+models selected
+> fitmap #200.3 inMap #6
+Fit map T137_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 45 points
+correlation = 0.9302, correlation about mean = 0.5878, overlap = 28.64
+steps = 56, shift = 2.4, angle = 13.1 degrees
+Position of T137_glycan.mrc (#200.3) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.98311964 -0.15593882 0.09570191 4.71498329
+.16424519 0.98265609 -0.08608441 -0.91925115
+-0.08061816 0.10034985 0.99168070 -53.10341825
+Axis 0.45436064 0.42971128 0.78032341
+Axis point -81.90360863 154.74895275 0.00000000
+Rotation angle (degrees) 11.83892973
+Shift along axis -39.69055024
+> select subtract #200.3
+models selected
+> view matrix models
+> #200.4,1,0,0,1.2314,0,1,0,-3.086,0,0,1,-102.49,#200.5,0.9996,-0.025113,0.012944,2.7397,0.02497,0.99963,0.011123,-9.1297,-0.013218,-0.010796,0.99985,-98.701
+> fitmap #200.4 inMap #6
+Fit map T137_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 45 points
+correlation = 0.8721, correlation about mean = 0.479, overlap = 20.35
+steps = 52, shift = 1.98, angle = 15.3 degrees
+Position of T137_glycan.mrc (#200.4) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.97085901 -0.19385153 -0.14090555 72.30161765
+.20205201 0.97828010 0.04629280 -39.40091587
+.12887117 -0.07341404 0.98894014 -107.83991297
+Axis -0.24241453 -0.54631627 0.80173170
+Axis point 439.86383276 203.73312803 0.00000000
+Rotation angle (degrees) 14.29445627
+Shift along axis -82.46027806
+> hide #!6 models
+> show #!6 models
+> select subtract #200.4
+models selected
+> view matrix models
+> #200.5,0.9996,-0.025113,0.012944,-7.935,0.02497,0.99963,0.011123,-21.989,-0.013218,-0.010796,0.99985,-145.01
+> view matrix models
+> #200.5,0.9996,-0.025113,0.012944,0.12697,0.02497,0.99963,0.011123,-24.204,-0.013218,-0.010796,0.99985,-150.65
+> view matrix models
+> #200.5,0.9996,-0.025113,0.012944,1.9494,0.02497,0.99963,0.011123,-11.889,-0.013218,-0.010796,0.99985,-151.65
+> view matrix models
+> #200.5,0.9996,-0.025113,0.012944,3.6938,0.02497,0.99963,0.011123,-12.217,-0.013218,-0.010796,0.99985,-150.7
+> view matrix models
+> #200.5,0.9996,-0.025113,0.012944,4.1857,0.02497,0.99963,0.011123,-12.459,-0.013218,-0.010796,0.99985,-151.46
+> hide #!6 models
+> show #!6 models
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #200.5,0.97705,-0.21295,0.0051481,38.181,0.21215,0.97062,-0.11352,-4.3153,0.019176,0.112,0.99352,-173.42
+> ui mousemode right "translate selected models"
+> view matrix models
+> #200.5,0.97705,-0.21295,0.0051481,38.649,0.21215,0.97062,-0.11352,-4.8562,0.019176,0.112,0.99352,-173.22
+> select subtract #200.5
+Nothing selected
+> color #200 #41feffff models
+> select add #200
+models selected
+> select subtract #200
+Nothing selected
+> vop add #200
+Opened volume sum as #14, grid size 28,30,205, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> vop add #200
+Opened volume sum as #15, grid size 28,30,205, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> vop add #200
+Opened volume sum as #16, grid size 28,30,205, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> vop add #200
+Opened volume sum as #17, grid size 28,30,205, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> vop add #200
+Opened volume sum as #18, grid size 28,30,205, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> select add #14
+models selected
+> select add #15
+models selected
+> select subtract #14
+models selected
+> hide #!6 models
+> show #!6 models
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #15,0.9981,-0.040324,0.046673,27.432,0.042097,0.9984,-0.03764,4.3212,-0.045081,0.039533,0.9982,31.709
+> view matrix models
+> #15,0.9981,-0.040324,0.046673,26.484,0.042097,0.9984,-0.03764,-1.5723,-0.045081,0.039533,0.9982,31.759
+> view matrix models
+> #15,0.9981,-0.040324,0.046673,28.085,0.042097,0.9984,-0.03764,-9.0132,-0.045081,0.039533,0.9982,33.127
+> view matrix models
+> #15,0.9981,-0.040324,0.046673,24.082,0.042097,0.9984,-0.03764,-7.8356,-0.045081,0.039533,0.9982,32.735
+> view matrix models
+> #15,0.9981,-0.040324,0.046673,19.199,0.042097,0.9984,-0.03764,-11.64,-0.045081,0.039533,0.9982,27.797
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #15,0.9981,-0.040324,0.046673,23.295,0.042097,0.9984,-0.03764,-13.436,-0.045081,0.039533,0.9982,29.761
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.7737, correlation about mean = 0.4669, overlap = 93.26
+steps = 88, shift = 4.77, angle = 2 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99980687 0.00367200 0.01930670 23.47037262
+-0.00220358 0.99714064 -0.07553609 3.11728110
+-0.01952887 0.07547895 0.99695614 22.37846295
+Axis 0.96780126 0.24888325 -0.03765448
+Axis point 0.00000000 -308.65841502 -21.66938940
+Rotation angle (degrees) 4.47474450
+Shift along axis 22.64784573
+> view matrix models
+> #15,0.99921,-0.020434,0.03406,23.811,0.022587,0.99769,-0.064073,-3.2223,-0.032673,0.064792,0.99736,24.039
+> view matrix models
+> #15,0.99921,-0.020434,0.03406,21.711,0.022587,0.99769,-0.064073,-2.8304,-0.032673,0.064792,0.99736,23.362
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,0.96866,-0.19949,0.14802,30.373,0.20496,0.97851,-0.02254,-35.087,-0.14034,0.052172,0.98873,42.835
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,0.96866,-0.19949,0.14802,31.733,0.20496,0.97851,-0.02254,-34.758,-0.14034,0.052172,0.98873,43.221
+> view matrix models
+> #15,0.96866,-0.19949,0.14802,33.048,0.20496,0.97851,-0.02254,-36.004,-0.14034,0.052172,0.98873,44.226
+> view matrix models
+> #15,0.96866,-0.19949,0.14802,32.347,0.20496,0.97851,-0.02254,-37.464,-0.14034,0.052172,0.98873,44.005
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.5966, correlation about mean = 0.3203, overlap = 51.06
+steps = 84, shift = 1.19, angle = 1.21 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.97634400 -0.17617395 0.12536003 29.98097645
+.17977239 0.98354526 -0.01790559 -36.79755001
+-0.12014276 0.04001828 0.99194972 42.24761920
+Axis 0.13277311 0.56274155 0.81590027
+Axis point 271.24943754 120.38389697 0.00000000
+Rotation angle (degrees) 12.59928320
+Shift along axis 17.74300089
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.5964, correlation about mean = 0.3201, overlap = 51.07
+steps = 48, shift = 0.0166, angle = 0.0386 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.97644875 -0.17552394 0.12545595 29.83815609
+.17914381 0.98365657 -0.01808980 -36.68097058
+-0.12023037 0.04013842 0.99193426 42.23593208
+Axis 0.13374615 0.56432438 0.81464714
+Axis point 271.46385744 120.08494073 0.00000000
+Rotation angle (degrees) 12.57291166
+Shift along axis 17.69815399
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.5965, correlation about mean = 0.3202, overlap = 51.05
+steps = 64, shift = 0.00987, angle = 0.0355 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.97653903 -0.17495606 0.12554638 29.72252607
+.17855842 0.98376557 -0.01794967 -36.64426801
+-0.12036781 0.03994591 0.99192536 42.29286911
+Axis 0.13324365 0.56595863 0.81359508
+Axis point 272.01312032 119.98262262 0.00000000
+Rotation angle (degrees) 12.54783107
+Shift along axis 17.63046820
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.5964, correlation about mean = 0.3202, overlap = 51.04
+steps = 24, shift = 0.00925, angle = 0.0329 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.97662917 -0.17439798 0.12562166 29.60431879
+.17800052 0.98386648 -0.01796009 -36.57852984
+-0.12046274 0.03990107 0.99191564 42.31223290
+Axis 0.13341482 0.56741532 0.81255175
+Axis point 272.38071104 119.80499213 0.00000000
+Rotation angle (degrees) 12.52389810
+Shift along axis 17.57531526
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.5963, correlation about mean = 0.3202, overlap = 51.03
+steps = 24, shift = 0.00731, angle = 0.0329 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.97672180 -0.17383881 0.12567659 29.49146182
+.17743840 0.98396817 -0.01795164 -36.51628190
+-0.12054107 0.03983361 0.99190883 42.33396855
+Axis 0.13349988 0.56883084 0.81154745
+Axis point 272.77937006 119.66559211 0.00000000
+Rotation angle (degrees) 12.49910239
+Shift along axis 17.52154347
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.5965, correlation about mean = 0.3203, overlap = 51.07
+steps = 48, shift = 0.0172, angle = 0.0526 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.97690248 -0.17296543 0.12547712 29.38295443
+.17657515 0.98411972 -0.01815482 -36.35912731
+-0.12034435 0.03989163 0.99193039 42.29581028
+Axis 0.13460060 0.57002135 0.81052967
+Axis point 273.21491580 119.76561182 0.00000000
+Rotation angle (degrees) 12.45218473
+Shift along axis 17.51149341
+> color #15 #41feffff models
+> color #14 #41feffff models
+> select add #15
+models selected
+> select subtract #15
+Nothing selected
+> select add #15
+models selected
+> select subtract #15
+Nothing selected
+> ui mousemode right "rotate selected models"
+> select add #15
+models selected
+> view matrix models
+> #15,0.97865,-0.19954,0.049224,49.249,0.19925,0.97989,0.010893,-43.976,-0.050408,-0.00085258,0.99873,36.871
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.7793, correlation about mean = 0.48, overlap = 88.75
+steps = 104, shift = 5.22, angle = 3.81 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.98772024 -0.15366428 0.02821388 47.23721897
+.15519415 0.98581178 -0.06395245 -21.07688735
+-0.01798637 0.06754575 0.99755404 23.07471104
+Axis 0.38807124 0.13634400 0.91148836
+Axis point 186.18626564 200.37294185 0.00000000
+Rotation angle (degrees) 9.75440843
+Shift along axis 36.49002952
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.7807, correlation about mean = 0.482, overlap = 89.08
+steps = 44, shift = 0.0307, angle = 0.667 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.98945563 -0.14217094 0.02765844 45.36063587
+.14369881 0.98750528 -0.06468372 -19.47565198
+-0.01811671 0.06797615 0.99752245 23.06240752
+Axis 0.41656939 0.14373995 0.89766852
+Axis point 189.48543143 197.18072768 0.00000000
+Rotation angle (degrees) 9.16214837
+Shift along axis 36.79882025
+> view matrix models
+> #15,0.98508,-0.16817,0.036434,49.312,0.16928,0.98512,-0.0298,-28.847,-0.03088,0.035523,0.99889,29.619
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,0.98508,-0.16817,0.036434,48.893,0.16928,0.98512,-0.0298,-33.05,-0.03088,0.035523,0.99889,29.847
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.7821, correlation about mean = 0.4843, overlap = 89.71
+steps = 92, shift = 4.42, angle = 1.93 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99226928 -0.12124455 0.02648457 42.02257735
+.12276327 0.99022020 -0.06628079 -16.43013177
+-0.01818937 0.06901972 0.99744946 22.94822754
+Axis 0.47883318 0.15810264 0.86355217
+Axis point 196.78949225 186.57392239 0.00000000
+Rotation angle (degrees) 8.12200580
+Shift along axis 37.34114873
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #15,0.98855,-0.14521,0.041009,44.387,0.14733,0.98758,-0.054636,-23.891,-0.032566,0.060053,0.99766,26.203
+> hide #!6 models
+> view matrix models
+> #15,0.98855,-0.14521,0.041009,42.325,0.14733,0.98758,-0.054636,-23.402,-0.032566,0.060053,0.99766,24.152
+> view matrix models
+> #15,0.98855,-0.14521,0.041009,40.183,0.14733,0.98758,-0.054636,-22.844,-0.032566,0.060053,0.99766,24.453
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,0.98946,-0.14415,0.013692,45.246,0.1447,0.98784,-0.056783,-22.075,-0.0053405,0.058165,0.99829,20.585
+> view matrix models
+> #15,0.98902,-0.14478,0.029785,42.251,0.14626,0.98769,-0.055527,-22.527,-0.021379,0.059274,0.99801,22.846
+> view matrix models
+> #15,0.98794,-0.14564,0.052598,38.067,0.14843,0.98746,-0.053704,-23.173,-0.044117,0.060863,0.99717,26.137
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,0.98794,-0.14564,0.052598,39.594,0.14843,0.98746,-0.053704,-22.974,-0.044117,0.060863,0.99717,25.307
+> show #!6 models
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6756, correlation about mean = 0.3542, overlap = 65.7
+steps = 56, shift = 1.72, angle = 0.958 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99033396 -0.13432545 0.03457336 39.87526453
+.13660799 0.98774988 -0.07542172 -18.72199707
+-0.02401878 0.07941568 0.99655218 21.00475509
+Axis 0.48766152 0.18453636 0.85330685
+Axis point 197.16881718 159.54349185 0.00000000
+Rotation angle (degrees) 9.13463874
+Shift along axis 33.91424414
+> select subtract #15
+Nothing selected
+> select add #16
+models selected
+> view matrix models
+> #16,0.9981,-0.040324,0.046673,141.53,0.042097,0.9984,-0.03764,-14.326,-0.045081,0.039533,0.9982,-1.9975
+> hide #!6 models
+> show #!6 models
+> color #16 #41feffff models
+> view matrix models
+> #16,0.9981,-0.040324,0.046673,58.998,0.042097,0.9984,-0.03764,-24.749,-0.045081,0.039533,0.9982,8.979
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #16,0.97679,-0.20056,0.075226,80.248,0.2005,0.97966,0.008438,-54.418,-0.075388,0.0068409,0.99713,18.503
+> view matrix models
+> #16,0.85454,-0.51199,0.087282,142.01,0.50159,0.85715,0.11708,-102.09,-0.13476,-0.05627,0.98928,38.149
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #16,0.8664,-0.4934,0.076815,139.56,0.48203,0.86657,0.12925,-102.98,-0.13033,-0.074952,0.98863,40.384
+> ui mousemode right "translate selected models"
+> view matrix models
+> #16,0.8664,-0.4934,0.076815,139.2,0.48203,0.86657,0.12925,-103.88,-0.13033,-0.074952,0.98863,34.657
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #16,0.8664,-0.4934,0.076815,138.37,0.48203,0.86657,0.12925,-102.99,-0.13033,-0.074952,0.98863,41.432
+> hide #!6 models
+> show #!6 models
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #16,0.86734,-0.49434,0.057768,142.1,0.4848,0.8654,0.12671,-102.73,-0.11263,-0.081891,0.99026,39.523
+> view matrix models
+> #16,0.99173,0.019545,0.12687,34.183,-0.0084993,0.99617,-0.087028,-7.2799,-0.12809,0.08523,0.98809,17.517
+> ui mousemode right "translate selected models"
+> view matrix models
+> #16,0.99173,0.019545,0.12687,2.6137,-0.0084993,0.99617,-0.087028,-15.965,-0.12809,0.08523,0.98809,-9.9555
+> view matrix models
+> #16,0.99173,0.019545,0.12687,-2.7885,-0.0084993,0.99617,-0.087028,-1.8236,-0.12809,0.08523,0.98809,-4.5294
+> view matrix models
+> #16,0.99173,0.019545,0.12687,-1.58,-0.0084993,0.99617,-0.087028,-3.0667,-0.12809,0.08523,0.98809,-11.239
+> fitmap #15 inMap #14
+Fit map volume sum in map volume sum using 427 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of volume sum (#15) relative to volume sum (#14) coordinates:
+Matrix rotation and translation
+.99283149 -0.11951168 0.00160801 44.03531058
+.11951284 0.99249049 -0.02606371 -28.10866951
+.00151898 0.02606905 0.99965899 26.50702461
+Axis 0.21309667 0.00036392 0.97703105
+Axis point 253.54574167 290.36055413 0.00000000
+Rotation angle (degrees) 7.02612300
+Shift along axis 35.27173484
+> fitmap #15 inMap #14
+Fit map volume sum in map volume sum using 427 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of volume sum (#15) relative to volume sum (#14) coordinates:
+Matrix rotation and translation
+.99283149 -0.11951168 0.00160801 44.03531058
+.11951284 0.99249049 -0.02606371 -28.10866951
+.00151898 0.02606905 0.99965899 26.50702461
+Axis 0.21309667 0.00036392 0.97703105
+Axis point 253.54574167 290.36055413 0.00000000
+Rotation angle (degrees) 7.02612300
+Shift along axis 35.27173484
+> fitmap #15 inMap #14
+Fit map volume sum in map volume sum using 427 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of volume sum (#15) relative to volume sum (#14) coordinates:
+Matrix rotation and translation
+.99283149 -0.11951168 0.00160801 44.03531058
+.11951284 0.99249049 -0.02606371 -28.10866951
+.00151898 0.02606905 0.99965899 26.50702461
+Axis 0.21309667 0.00036392 0.97703105
+Axis point 253.54574167 290.36055413 0.00000000
+Rotation angle (degrees) 7.02612300
+Shift along axis 35.27173484
+> fitmap #16 inMap #15
+Fit map volume sum in map volume sum using 427 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of volume sum (#16) relative to volume sum (#15) coordinates:
+Matrix rotation and translation
+.98159803 0.17643581 0.07304596 -38.64845236
+-0.17420070 0.98405314 -0.03596563 24.46335416
+-0.07822673 0.02257913 0.99667987 -39.18978252
+Axis 0.15153776 0.39155553 -0.90759053
+Axis point 28.70224524 255.79048274 0.00000000
+Rotation angle (degrees) 11.13777487
+Shift along axis 39.29033739
+> fitmap #16 inMap #15
+Fit map volume sum in map volume sum using 427 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of volume sum (#16) relative to volume sum (#15) coordinates:
+Matrix rotation and translation
+.98159803 0.17643581 0.07304596 -38.64845236
+-0.17420070 0.98405314 -0.03596563 24.46335416
+-0.07822673 0.02257913 0.99667987 -39.18978252
+Axis 0.15153776 0.39155553 -0.90759053
+Axis point 28.70224524 255.79048274 0.00000000
+Rotation angle (degrees) 11.13777487
+Shift along axis 39.29033739
+> view matrix models
+> #16,0.99173,0.019545,0.12687,-9.5292,-0.0084993,0.99617,-0.087028,-1.0365,-0.12809,0.08523,0.98809,-13.803
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #16,0.9996,-0.00069114,0.028374,11.602,0.0022909,0.99841,-0.056386,-8.9667,-0.02829,0.056428,0.99801,-26.236
+> ui mousemode right "translate selected models"
+> view matrix models
+> #16,0.9996,-0.00069114,0.028374,18.868,0.0022909,0.99841,-0.056386,-11.179,-0.02829,0.056428,0.99801,-26.6
+> view matrix models
+> #16,0.9996,-0.00069114,0.028374,19.776,0.0022909,0.99841,-0.056386,-6.0598,-0.02829,0.056428,0.99801,-23.093
+> fitmap #16 inMap #15
+Fit map volume sum in map volume sum using 427 points
+correlation = 0.7896, correlation about mean = 0.5779, overlap = 80.64
+steps = 104, shift = 4.81, angle = 1.4 degrees
+Position of volume sum (#16) relative to volume sum (#15) coordinates:
+Matrix rotation and translation
+.99036813 0.13835916 -0.00526411 -15.15584351
+-0.13830514 0.99034386 0.00952542 15.59706589
+.00653121 -0.00870562 0.99994077 -51.15429978
+Axis -0.06569385 -0.04250333 -0.99693419
+Axis point 122.00819764 93.66154877 0.00000000
+Rotation angle (degrees) 7.97595745
+Shift along axis 51.33018908
+> fitmap #16 inMap #15
+Fit map volume sum in map volume sum using 427 points
+correlation = 0.792, correlation about mean = 0.5814, overlap = 81.14
+steps = 60, shift = 0.02, angle = 0.587 degrees
+Position of volume sum (#16) relative to volume sum (#15) coordinates:
+Matrix rotation and translation
+.99173250 0.12824265 -0.00452543 -13.97692275
+-0.12819229 0.99169825 0.01006540 13.78563127
+.00577867 -0.00940206 0.99993910 -50.92862281
+Axis -0.07563730 -0.04003471 -0.99633138
+Axis point 117.95013491 86.36664037 0.00000000
+Rotation angle (degrees) 7.39387511
+Shift along axis 51.24705798
+> fitmap #16 inMap #15
+Fit map volume sum in map volume sum using 427 points
+correlation = 0.7955, correlation about mean = 0.5867, overlap = 81.74
+steps = 96, shift = 0.0128, angle = 0.928 degrees
+Position of volume sum (#16) relative to volume sum (#15) coordinates:
+Matrix rotation and translation
+.99367633 0.11223645 -0.00321450 -12.11998103
+-0.11219603 0.99362751 0.01078965 10.98307232
+.00440501 -0.01036076 0.99993662 -50.58151283
+Axis -0.09377027 -0.03378105 -0.99502059
+Axis point 109.21773704 71.45125323 0.00000000
+Rotation angle (degrees) 6.47546896
+Shift along axis 51.09512100
+> view matrix models
+> #16,0.99791,-0.046906,0.044434,50.09,0.04926,0.99735,-0.053469,-7.0956,-0.041808,0.055546,0.99758,-20.67
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #16,0.99791,-0.046906,0.044434,58.69,0.04926,0.99735,-0.053469,-3.4531,-0.041808,0.055546,0.99758,4.6812
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #16,0.99791,-0.046906,0.044434,59.338,0.04926,0.99735,-0.053469,-6.2948,-0.041808,0.055546,0.99758,3.0705
+> view matrix models
+> #16,0.99791,-0.046906,0.044434,58.747,0.04926,0.99735,-0.053469,-6.8318,-0.041808,0.055546,0.99758,-0.52267
+> hide #!6 models
+> show #!6 models
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #16,0.99791,-0.046906,0.044434,56.156,0.04926,0.99735,-0.053469,-6.7818,-0.041808,0.055546,0.99758,2.702
+> view matrix models
+> #16,0.99791,-0.046906,0.044434,56.268,0.04926,0.99735,-0.053469,-8.3255,-0.041808,0.055546,0.99758,1.9518
+> view matrix models
+> #16,0.99791,-0.046906,0.044434,56.22,0.04926,0.99735,-0.053469,-8.0829,-0.041808,0.055546,0.99758,2.5332
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #16,0.94248,-0.32928,0.057507,103.61,0.33166,0.94263,-0.038148,-44.729,-0.041647,0.055026,0.99762,2.5791
+> ui mousemode right "translate selected models"
+> view matrix models
+> #16,0.94248,-0.32928,0.057507,105.25,0.33166,0.94263,-0.038148,-44.75,-0.041647,0.055026,0.99762,3.0136
+> view matrix models
+> #16,0.94248,-0.32928,0.057507,105.21,0.33166,0.94263,-0.038148,-44.505,-0.041647,0.055026,0.99762,4.0334
+> view matrix models
+> #16,0.94248,-0.32928,0.057507,105.22,0.33166,0.94263,-0.038148,-45.769,-0.041647,0.055026,0.99762,3.829
+> view matrix models
+> #16,0.94248,-0.32928,0.057507,105.05,0.33166,0.94263,-0.038148,-45.739,-0.041647,0.055026,0.99762,4.2194
+> select subtract #16
+Nothing selected
+> select add #17
+models selected
+> view matrix models
+> #17,0.9981,-0.040324,0.046673,117.49,0.042097,0.9984,-0.03764,21.195,-0.045081,0.039533,0.9982,7.0876
+> hide #!17 models
+> show #!17 models
+> color #17 #41feffff models
+> view matrix models
+> #17,0.9981,-0.040324,0.046673,76.59,0.042097,0.9984,-0.03764,10.975,-0.045081,0.039533,0.9982,38.965
+> view matrix models
+> #17,0.9981,-0.040324,0.046673,84.164,0.042097,0.9984,-0.03764,20.672,-0.045081,0.039533,0.9982,4.5538
+> view matrix models
+> #17,0.9981,-0.040324,0.046673,75.274,0.042097,0.9984,-0.03764,14.899,-0.045081,0.039533,0.9982,-13.727
+> view matrix models
+> #17,0.9981,-0.040324,0.046673,78.866,0.042097,0.9984,-0.03764,9.4335,-0.045081,0.039533,0.9982,-16.695
+> view matrix models
+> #17,0.9981,-0.040324,0.046673,82.62,0.042097,0.9984,-0.03764,2.453,-0.045081,0.039533,0.9982,-14.784
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #17,0.9981,-0.040324,0.046673,84.271,0.042097,0.9984,-0.03764,3.8553,-0.045081,0.039533,0.9982,-17.44
+> view matrix models
+> #17,0.9981,-0.040324,0.046673,84.432,0.042097,0.9984,-0.03764,5.4001,-0.045081,0.039533,0.9982,-16.923
+> fitmap #17 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6779, correlation about mean = 0.3314, overlap = 66.33
+steps = 92, shift = 5.37, angle = 2.18 degrees
+Position of volume sum (#17) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99827306 -0.02505772 0.05313206 80.54172221
+.02924601 0.99639973 -0.07957544 19.10461279
+-0.05094679 0.08099192 0.99541184 -21.02641655
+Axis 0.80725673 0.52325923 0.27301348
+Axis point 0.00000000 479.69123104 -237.14194590
+Rotation angle (degrees) 5.70764225
+Shift along axis 69.27401681
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #17,0.55853,-0.82635,0.072077,260.36,0.82935,0.55789,-0.030535,-42.075,-0.014978,0.076832,0.99693,-26.867
+> fitmap #17 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6428, correlation about mean = 0.1466, overlap = 68.07
+steps = 64, shift = 4.5, angle = 0.701 degrees
+Position of volume sum (#17) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.58385146 -0.80988902 0.05654417 259.63656466
+.81183370 0.58298033 -0.03255729 -42.14947767
+-0.00659634 0.06491308 0.99786912 -22.78196689
+Axis 0.05994946 0.03883477 0.99744570
+Axis point 171.29580390 233.21634324 0.00000000
+Rotation angle (degrees) 54.38396843
+Shift along axis -8.79556701
+> ui mousemode right "translate selected models"
+> view matrix models
+> #17,0.56312,-0.82339,0.070214,266.74,0.82606,0.56322,-0.020169,-43.189,-0.022939,0.069359,0.99733,-22.504
+> hide #!6 models
+> show #!6 models
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #17,0.56312,-0.82339,0.070214,264.59,0.82606,0.56322,-0.020169,-49.313,-0.022939,0.069359,0.99733,-25.649
+> view matrix models
+> #17,0.56312,-0.82339,0.070214,262.28,0.82606,0.56322,-0.020169,-48.254,-0.022939,0.069359,0.99733,-22.681
+> hide #!6 models
+> show #!6 models
+> fitmap #17 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6079, correlation about mean = 0.2462, overlap = 57.67
+steps = 92, shift = 2.97, angle = 3.45 degrees
+Position of volume sum (#17) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.59413714 -0.79639650 0.11293219 245.04833396
+.80379744 0.59310557 -0.04621106 -44.12684983
+-0.03017839 0.11823031 0.99252751 -29.08149904
+Axis 0.10182290 0.08861477 0.99084788
+Axis point 167.17653592 223.49315763 0.00000000
+Rotation angle (degrees) 53.85114459
+Shift along axis -7.77410034
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #17,0.5642,-0.82049,0.092094,257.2,0.82352,0.56723,0.0084412,-52.029,-0.059164,0.071079,0.99571,-19.303
+> ui mousemode right "translate selected models"
+> view matrix models
+> #17,0.5642,-0.82049,0.092094,255.33,0.82352,0.56723,0.0084412,-54.34,-0.059164,0.071079,0.99571,-18.486
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #17,0.5642,-0.82049,0.092094,256.04,0.82352,0.56723,0.0084412,-53.88,-0.059164,0.071079,0.99571,-20.098
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #17,0.47328,-0.88046,0.02823,290.87,0.87541,0.47366,0.096478,-64.964,-0.098317,-0.020949,0.99493,-0.54976
+> view matrix models
+> #17,0.47316,-0.88096,-0.0059469,297.66,0.87947,0.47194,0.061682,-58.491,-0.051532,-0.034415,0.99808,-6.0889
+> view matrix models
+> #17,0.35244,-0.92989,0.10532,300.93,0.93578,0.35134,-0.029514,-31.107,-0.0095568,0.10896,0.994,-32.696
+> ui mousemode right "translate selected models"
+> view matrix models
+> #17,0.35244,-0.92989,0.10532,303.08,0.93578,0.35134,-0.029514,-30.866,-0.0095568,0.10896,0.994,-33.21
+> view matrix models
+> #17,0.35244,-0.92989,0.10532,303.74,0.93578,0.35134,-0.029514,-32.931,-0.0095568,0.10896,0.994,-34.606
+> view matrix models
+> #17,0.35244,-0.92989,0.10532,304.36,0.93578,0.35134,-0.029514,-31.68,-0.0095568,0.10896,0.994,-31.807
+> fitmap #17 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6036, correlation about mean = 0.2023, overlap = 57.73
+steps = 92, shift = 2.41, angle = 3.38 degrees
+Position of volume sum (#17) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.35971743 -0.92408868 0.12908712 296.99541853
+.93182522 0.36290519 0.00126117 -38.23997204
+-0.04801182 0.11983297 0.99163246 -26.52052825
+Axis 0.06347148 0.09480106 0.99347075
+Axis point 176.53667768 199.83794204 0.00000000
+Rotation angle (degrees) 69.07610729
+Shift along axis -11.12181892
+> hide #!6 models
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #17,0.31204,-0.94344,0.11201,310.33,0.95,0.31124,-0.024939,-26.218,-0.011333,0.11419,0.99339,-32.328
+> view matrix models
+> #17,0.34232,-0.93891,0.035563,320.17,0.9394,0.34275,0.0066567,-35.502,-0.018439,0.031129,0.99935,-20.16
+> view matrix models
+> #17,0.35137,-0.93504,0.047297,315.96,0.93545,0.35269,0.023137,-39.618,-0.038316,0.036114,0.99861,-17.816
+> view matrix models
+> #17,0.3323,-0.93927,0.08572,311.87,0.94255,0.33401,0.0060396,-34.554,-0.034305,0.078788,0.9963,-24.267
+> ui mousemode right "translate selected models"
+> view matrix models
+> #17,0.3323,-0.93927,0.08572,310.88,0.94255,0.33401,0.0060396,-35.654,-0.034305,0.078788,0.9963,-26.296
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #17,0.33382,-0.93782,0.095172,308.59,0.94163,0.33642,0.012249,-37.091,-0.043506,0.085527,0.99539,-25.753
+> ui mousemode right "translate selected models"
+> view matrix models
+> #17,0.33382,-0.93782,0.095172,308.28,0.94163,0.33642,0.012249,-37.09,-0.043506,0.085527,0.99539,-24.758
+> show #!6 models
+> view matrix models
+> #17,0.33382,-0.93782,0.095172,308.85,0.94163,0.33642,0.012249,-37.494,-0.043506,0.085527,0.99539,-25.955
+> view matrix models
+> #17,0.33382,-0.93782,0.095172,310.18,0.94163,0.33642,0.012249,-36.688,-0.043506,0.085527,0.99539,-26.116
+> view matrix models
+> #17,0.33382,-0.93782,0.095172,309.68,0.94163,0.33642,0.012249,-37.32,-0.043506,0.085527,0.99539,-24.794
+> select subtract #17
+Nothing selected
+> select add #18
+models selected
+> view matrix models
+> #18,0.9981,-0.040324,0.046673,56.032,0.042097,0.9984,-0.03764,-79.826,-0.045081,0.039533,0.9982,2.1794
+> view matrix models
+> #18,0.9981,-0.040324,0.046673,88.209,0.042097,0.9984,-0.03764,-0.11577,-0.045081,0.039533,0.9982,-19.991
+> fitmap #18 inMap #17
+Fit map volume sum in map volume sum using 427 points
+correlation = 0.6876, correlation about mean = 0.4538, overlap = 68.28
+steps = 116, shift = 8.37, angle = 3.5 degrees
+Position of volume sum (#18) relative to volume sum (#17) coordinates:
+Matrix rotation and translation
+.39154326 0.91419851 -0.10457034 -26.29295519
+-0.91969823 0.39241028 -0.01301279 231.14894092
+.02913820 0.10126822 0.99443236 -18.73041655
+Axis 0.06203129 -0.07257647 -0.99543195
+Axis point 161.38036020 136.18560724 0.00000000
+Rotation angle (degrees) 67.09570817
+Shift along axis 0.23789528
+> fitmap #18 inMap #17
+Fit map volume sum in map volume sum using 427 points
+correlation = 0.6888, correlation about mean = 0.4544, overlap = 68.42
+steps = 48, shift = 0.0213, angle = 0.536 degrees
+Position of volume sum (#18) relative to volume sum (#17) coordinates:
+Matrix rotation and translation
+.40010780 0.91056403 -0.10386001 -27.15887810
+-0.91599386 0.40096976 -0.01336068 229.37025152
+.02947897 0.10048085 0.99450218 -18.68155072
+Axis 0.06204056 -0.07266615 -0.99542483
+Axis point 161.37959164 136.16214868 0.00000000
+Rotation angle (degrees) 66.55991485
+Shift along axis 0.24367352
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,0.99326,-0.085941,0.077754,86.481,0.090607,0.99416,-0.058607,4.5773,-0.072263,0.065257,0.99525,-17.756
+> view matrix models
+> #18,0.99906,0.031444,0.029853,77.651,-0.029438,0.99742,-0.065412,23.17,-0.031833,0.064472,0.99741,-24.039
+> view matrix models
+> #18,0.97403,-0.21938,0.055981,113.32,0.22361,0.97088,-0.085932,-6.2827,-0.035499,0.096219,0.99473,-27.666
+> fitmap #18 inMap #17
+Fit map volume sum in map volume sum using 427 points
+correlation = 0.7102, correlation about mean = 0.4721, overlap = 72.62
+steps = 52, shift = 0.419, angle = 1.56 degrees
+Position of volume sum (#18) relative to volume sum (#17) coordinates:
+Matrix rotation and translation
+.54424990 0.83406395 -0.09016314 -39.79007647
+-0.83823557 0.54500447 -0.01820088 196.94709575
+.03395862 0.08548378 0.99576069 -17.32056394
+Axis 0.06171332 -0.07387752 -0.99535601
+Axis point 161.24546338 135.83154065 0.00000000
+Rotation angle (degrees) 57.14549954
+Shift along axis 0.23458713
+> view matrix models
+> #18,0.89857,-0.42684,0.10187,146.73,0.43383,0.899,-0.059918,-31.974,-0.066001,0.098033,0.99299,-23.086
+> fitmap #18 inMap #17
+Fit map volume sum in map volume sum using 427 points
+correlation = 0.7558, correlation about mean = 0.519, overlap = 80.03
+steps = 48, shift = 0.851, angle = 1.01 degrees
+Position of volume sum (#18) relative to volume sum (#17) coordinates:
+Matrix rotation and translation
+.72071611 0.68971139 -0.06976037 -48.33265945
+-0.69232580 0.72126101 -0.02162287 149.21759615
+.03540189 0.06388085 0.99732941 -14.58660605
+Axis 0.06157250 -0.07572891 -0.99522558
+Axis point 161.07492116 135.32200177 0.00000000
+Rotation angle (degrees) 43.97413959
+Shift along axis 0.24091474
+> view matrix models
+> #18,0.82545,-0.55879,0.079945,182.13,0.56321,0.82479,-0.050135,-42.118,-0.037923,0.086409,0.99554,-26.03
+> fitmap #18 inMap #17
+Fit map volume sum in map volume sum using 427 points
+correlation = 0.7915, correlation about mean = 0.5523, overlap = 85.95
+steps = 48, shift = 0.392, angle = 1.16 degrees
+Position of volume sum (#18) relative to volume sum (#17) coordinates:
+Matrix rotation and translation
+.81493053 0.57687911 -0.05566614 -48.11581512
+-0.57862315 0.81530857 -0.02161440 118.02234136
+.03291619 0.04982395 0.99821546 -12.29075973
+Axis 0.06152683 -0.07629222 -0.99518538
+Axis point 160.89827667 135.05359921 0.00000000
+Rotation angle (degrees) 35.48897137
+Shift along axis 0.26698433
+> fitmap #18 inMap #17
+Fit map volume sum in map volume sum using 427 points
+correlation = 0.7954, correlation about mean = 0.5564, overlap = 86.68
+steps = 44, shift = 0.0326, angle = 0.775 degrees
+Position of volume sum (#18) relative to volume sum (#17) coordinates:
+Matrix rotation and translation
+.82268105 0.56589746 -0.05436875 -47.86453904
+-0.56756946 0.82304424 -0.02151962 115.18248296
+.03256999 0.04856183 0.99828901 -12.06174884
+Axis 0.06153140 -0.07633207 -0.99518204
+Axis point 160.87921217 135.02068296 0.00000000
+Rotation angle (degrees) 34.71377510
+Shift along axis 0.26634641
+> view matrix models
+> #18,0.72793,-0.67416,0.12503,205.35,0.68172,0.73112,-0.026859,-50.288,-0.073305,0.10479,0.99179,-22.81
+> fitmap #18 inMap #17
+Fit map volume sum in map volume sum using 427 points
+correlation = 0.844, correlation about mean = 0.6258, overlap = 95.84
+steps = 60, shift = 0.612, angle = 1.83 degrees
+Position of volume sum (#18) relative to volume sum (#17) coordinates:
+Matrix rotation and translation
+.89591973 0.44236625 -0.04049636 -42.87909765
+-0.44335818 0.89612891 -0.01965984 85.29354002
+.02759311 0.03556803 0.99898626 -9.49428411
+Axis 0.06205010 -0.07650049 -0.99513691
+Axis point 160.84206666 134.81107813 0.00000000
+Rotation angle (degrees) 26.42502873
+Shift along axis 0.26246269
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,0.7175,-0.68935,0.099994,256.15,0.69481,0.71846,-0.03251,18.756,-0.049431,0.092802,0.99446,-9.7298
+> hide #!6 models
+> show #!6 models
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,0.30234,-0.9481,0.098443,356.07,0.9518,0.30588,0.022729,30.962,-0.051662,0.086826,0.99488,-8.6
+> view matrix models
+> #18,-0.58567,-0.8072,0.073581,471.35,0.8094,-0.5776,0.10606,166.33,-0.043111,0.12167,0.99163,-14.38
+> color #18 #41feffff models
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #18,-0.70743,-0.67017,0.22453,439.5,0.69614,-0.71561,0.0574,213.01,0.12221,0.19691,0.97278,-46.244
+> view matrix models
+> #18,-0.71475,-0.68329,0.14914,457.3,0.68843,-0.72496,-0.022168,231.13,0.12327,0.086827,0.98857,-33.216
+> view matrix models
+> #18,-0.72257,-0.68102,0.11876,464.07,0.6913,-0.71145,0.12629,199.61,-0.001517,0.17335,0.98486,-26.842
+> view matrix models
+> #18,-0.72204,-0.69117,0.030526,482.78,0.69139,-0.71925,0.068264,212.13,-0.025226,0.070395,0.9972,-10.531
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,-0.72204,-0.69117,0.030526,490.01,0.69139,-0.71925,0.068264,183.63,-0.025226,0.070395,0.9972,-11.669
+> view matrix models
+> #18,-0.72204,-0.69117,0.030526,465.59,0.69139,-0.71925,0.068264,167.28,-0.025226,0.070395,0.9972,-4.6726
+> view matrix models
+> #18,-0.72204,-0.69117,0.030526,466.98,0.69139,-0.71925,0.068264,170.35,-0.025226,0.070395,0.9972,1.3071
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.70413229 -0.70981224 0.01908558 469.50108267
+.70955746 -0.70235116 0.05684202 164.54948046
+-0.02694237 0.05356660 0.99820070 5.31563464
+Axis -0.00230644 0.03241132 0.99947195
+Axis point 200.52198680 180.05767415 0.00000000
+Rotation angle (degrees) 134.76021910
+Shift along axis 9.56321828
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.70413229 -0.70981224 0.01908558 469.50108267
+.70955746 -0.70235116 0.05684202 164.54948046
+-0.02694237 0.05356660 0.99820070 5.31563464
+Axis -0.00230644 0.03241132 0.99947195
+Axis point 200.52198680 180.05767415 0.00000000
+Rotation angle (degrees) 134.76021910
+Shift along axis 9.56321828
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.70413229 -0.70981224 0.01908558 469.50108267
+.70955746 -0.70235116 0.05684202 164.54948046
+-0.02694237 0.05356660 0.99820070 5.31563464
+Axis -0.00230644 0.03241132 0.99947195
+Axis point 200.52198680 180.05767415 0.00000000
+Rotation angle (degrees) 134.76021910
+Shift along axis 9.56321828
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,-0.7096,-0.67447,0.20387,428.7,0.68914,-0.72463,0.001342,184.59,0.14682,0.14144,0.979,-31.061
+> view matrix models
+> #18,-0.84929,-0.45775,0.26302,405.7,0.44603,-0.88867,-0.10639,265.89,0.28244,0.026965,0.95891,-30.237
+> view matrix models
+> #18,-0.96681,-0.25491,0.017118,441.26,0.25385,-0.96603,-0.048336,294.36,0.028858,-0.042386,0.99868,9.7014
+> view matrix models
+> #18,-0.96628,-0.25698,-0.016431,448.07,0.25749,-0.96495,-0.050744,294.13,-0.0028147,-0.053263,0.99858,16.012
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,-0.96628,-0.25698,-0.016431,436.89,0.25749,-0.96495,-0.050744,293.13,-0.0028147,-0.053263,0.99858,16.53
+> view matrix models
+> #18,-0.96628,-0.25698,-0.016431,440.3,0.25749,-0.96495,-0.050744,299.39,-0.0028147,-0.053263,0.99858,17.545
+> view matrix models
+> #18,-0.96628,-0.25698,-0.016431,437.8,0.25749,-0.96495,-0.050744,303.09,-0.0028147,-0.053263,0.99858,22.692
+> view matrix models
+> #18,-0.96628,-0.25698,-0.016431,439.62,0.25749,-0.96495,-0.050744,309.89,-0.0028147,-0.053263,0.99858,21.357
+> view matrix models
+> #18,-0.96628,-0.25698,-0.016431,434.41,0.25749,-0.96495,-0.050744,311.84,-0.0028147,-0.053263,0.99858,25.043
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,-0.96396,-0.26593,-0.0084536,433.82,0.2659,-0.96399,0.0045149,299.63,-0.0093498,0.0021043,0.99995,17.55
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #18,-0.96301,-0.2694,-0.0050939,433.54,0.26918,-0.96272,0.026786,294.59,-0.01212,0.024424,0.99963,14.723
+> hide #!6 models
+> show #!6 models
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,-0.96301,-0.2694,-0.0050939,433.38,0.26918,-0.96272,0.026786,286.47,-0.01212,0.024424,0.99963,8.3243
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6055, correlation about mean = 0.216, overlap = 57.32
+steps = 92, shift = 2.16, angle = 0.891 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.95331189 -0.30071918 -0.02764748 439.41258374
+.30005838 -0.95357577 0.02565494 279.05932832
+-0.03407889 0.01616128 0.99928842 14.93585147
+Axis -0.01579941 0.01070320 0.99981789
+Axis point 198.37340138 173.25431540 0.00000000
+Rotation angle (degrees) 162.51575771
+Shift along axis 10.97749941
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6053, correlation about mean = 0.2158, overlap = 57.33
+steps = 64, shift = 0.0167, angle = 0.361 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.95142325 -0.30669316 -0.02707531 439.92780514
+.30603077 -0.95166584 0.02602420 277.81740803
+-0.03374809 0.01647413 0.99929454 14.84539182
+Axis -0.01558344 0.01088837 0.99981928
+Axis point 198.27857275 173.37847372 0.00000000
+Rotation angle (degrees) 162.15654533
+Shift along axis 11.01210072
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6049, correlation about mean = 0.2153, overlap = 57.4
+steps = 84, shift = 0.0163, angle = 0.593 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.94824715 -0.31647156 -0.02594349 440.70986354
+.31581743 -0.94845229 0.02641121 275.80283724
+-0.03296455 0.01685093 0.99931441 14.66811690
+Axis -0.01511746 0.01110224 0.99982409
+Axis point 198.09559813 173.59523162 0.00000000
+Rotation angle (degrees) 161.56672108
+Shift along axis 11.06515387
+> hide #!6 models
+> show #!6 models
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,-0.9563,-0.29222,-0.010184,434.83,0.29044,-0.95334,0.082383,271.8,-0.033783,0.075824,0.99655,5.2375
+> view matrix models
+> #18,-0.86843,-0.4957,-0.010779,452.05,0.49342,-0.86617,0.079309,229.51,-0.04865,0.063556,0.99679,9.2015
+> view matrix models
+> #18,-0.3712,-0.92414,0.090415,422.09,0.9242,-0.35828,0.13228,80.359,-0.089852,0.13266,0.98708,6.9742
+> view matrix models
+> #18,-0.36968,-0.92364,0.10109,419.7,0.92759,-0.36056,0.097812,86.949,-0.053894,0.12993,0.99006,1.4804
+> view matrix models
+> #18,-0.3728,-0.92751,0.027379,435.18,0.92598,-0.36996,0.075473,92.955,-0.059873,0.053489,0.99677,12.353
+> view matrix models
+> #18,-0.26071,-0.96524,0.018567,425.92,0.96294,-0.25862,0.076574,70.811,-0.069111,0.037842,0.99689,16.009
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,-0.26071,-0.96524,0.018567,432.54,0.96294,-0.25862,0.076574,71.822,-0.069111,0.037842,0.99689,15.071
+> view matrix models
+> #18,-0.26071,-0.96524,0.018567,431.31,0.96294,-0.25862,0.076574,66.918,-0.069111,0.037842,0.99689,15.619
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6577, correlation about mean = 0.2697, overlap = 75.09
+steps = 84, shift = 4.97, angle = 2.47 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.22675251 -0.97304386 0.04205829 419.03050494
+.97087511 -0.22239515 0.08911727 57.76913398
+-0.07736144 0.06104090 0.99513272 14.44886246
+Axis -0.01441450 0.06131050 0.99801465
+Axis point 186.93855921 195.13508791 0.00000000
+Rotation angle (degrees) 103.12095305
+Shift along axis 11.92191371
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.658, correlation about mean = 0.2699, overlap = 75.09
+steps = 44, shift = 0.0238, angle = 0.32 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.22131860 -0.97427772 0.04243769 418.32457058
+.97213602 -0.21696614 0.08875372 56.82562146
+-0.07726323 0.06089804 0.99514910 14.43971983
+Axis -0.01428284 0.06137596 0.99801252
+Axis point 186.83194056 195.33808650 0.00000000
+Rotation angle (degrees) 102.80113548
+Shift along axis 11.92388436
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6581, correlation about mean = 0.2697, overlap = 75.06
+steps = 48, shift = 0.00744, angle = 0.333 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.21567825 -0.97551179 0.04312300 417.54611805
+.97341863 -0.21131031 0.08834072 55.87623943
+-0.07706507 0.06102988 0.99515639 14.38702510
+Axis -0.01398531 0.06154578 0.99800628
+Axis point 186.69009958 195.54684174 0.00000000
+Rotation angle (degrees) 102.46927793
+Shift along axis 11.95777803
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6584, correlation about mean = 0.2705, overlap = 75.08
+steps = 64, shift = 0.011, angle = 0.412 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.20869320 -0.97699423 0.04392468 416.58709459
+.97495226 -0.20430480 0.08790684 54.69324909
+-0.07691045 0.06117000 0.99515975 14.34290234
+Axis -0.01367008 0.06178089 0.99799612
+Axis point 186.52623153 195.80271051 0.00000000
+Rotation angle (degrees) 102.05901803
+Shift along axis 11.99838069
+> hide #!6 models
+> view matrix models
+> #18,-0.23412,-0.97068,0.054535,419.26,0.96852,-0.22799,0.099905,56.273,-0.084542,0.076208,0.9935,10.731
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,-0.23419,-0.97085,0.051108,419.96,0.97147,-0.23168,0.050615,66.042,-0.037299,0.061504,0.99741,5.1577
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,-0.23419,-0.97085,0.051108,420.22,0.97147,-0.23168,0.050615,67.097,-0.037299,0.061504,0.99741,5.6605
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,-0.23518,-0.9704,0.054888,419.56,0.9705,-0.23136,0.067831,63.821,-0.053124,0.069221,0.99619,7.0981
+> view matrix models
+> #18,-0.22727,-0.97249,0.051138,419.44,0.97117,-0.22245,0.08574,58.895,-0.072005,0.06915,0.995,10.131
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,-0.22727,-0.97249,0.051138,419.82,0.97117,-0.22245,0.08574,60.127,-0.072005,0.06915,0.995,8.559
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,-0.2312,-0.96992,0.07619,415.11,0.97063,-0.22459,0.086263,60.42,-0.066556,0.093896,0.99335,4.4174
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,-0.2312,-0.96992,0.07619,415.17,0.97063,-0.22459,0.086263,59.198,-0.066556,0.093896,0.99335,4.4155
+> show #!6 models
+> select subtract #18
+Nothing selected
+> hide #!6 models
+> show #!6 models
+> select add #18
+models selected
+> view matrix models
+> #18,-0.2312,-0.96992,0.07619,414.64,0.97063,-0.22459,0.086263,58.781,-0.066556,0.093896,0.99335,6.486
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6591, correlation about mean = 0.2712, overlap = 75.11
+steps = 76, shift = 3.28, angle = 1.49 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.19735963 -0.97929120 0.04514292 415.01553071
+.97733529 -0.19295051 0.08709654 52.80804720
+-0.07658252 0.06130909 0.99517648 14.26083353
+Axis -0.01315298 0.06208648 0.99798410
+Axis point 186.25147747 196.22768279 0.00000000
+Rotation angle (degrees) 101.39471026
+Shift along axis 12.05205990
+> view matrix models
+> #18,-0.22285,-0.97326,0.055773,418.14,0.97119,-0.2167,0.099125,57.381,-0.084388,0.076257,0.99351,12.512
+> view matrix models
+> #18,-0.22285,-0.97326,0.055773,417.17,0.97119,-0.2167,0.099125,54.199,-0.084388,0.076257,0.99351,13.211
+> view matrix models
+> #18,-0.22285,-0.97326,0.055773,414.94,0.97119,-0.2167,0.099125,47.65,-0.084388,0.076257,0.99351,12.349
+> view matrix models
+> #18,-0.22285,-0.97326,0.055773,417.8,0.97119,-0.2167,0.099125,57.337,-0.084388,0.076257,0.99351,10.739
+> view matrix models
+> #18,-0.22285,-0.97326,0.055773,418.64,0.97119,-0.2167,0.099125,56.515,-0.084388,0.076257,0.99351,10.582
+> view matrix models
+> #18,-0.22285,-0.97326,0.055773,418.75,0.97119,-0.2167,0.099125,57.003,-0.084388,0.076257,0.99351,10.794
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,-0.23226,-0.9689,0.085404,413.69,0.96965,-0.22375,0.098598,58.377,-0.076422,0.10571,0.99146,5.6636
+> view matrix models
+> #18,-0.23027,-0.96959,0.08289,413.99,0.97061,-0.22272,0.091155,59.542,-0.069921,0.10144,0.99238,5.1525
+> ui mousemode right "rotate selected models"
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,-0.23027,-0.96959,0.08289,413.73,0.97061,-0.22272,0.091155,58.832,-0.069921,0.10144,0.99238,5.1726
+> select subtract #18
+Nothing selected
+> hide #!6 models
+> hide #5 models
+> ui tool show "Map Eraser"
+> select add #21
+model selected
+Can only have one displayed volume when erasing
+> select subtract #21
+Nothing selected
+> hide #21 models
+> show #21 models
+Can only have one displayed volume when erasing
+> hide #!18 models
+> show #!18 models
+Can only have one displayed volume when erasing
+> close #21
+> ui tool show "Map Eraser"
+Can only have one displayed volume when erasing
+> show #!6 models
+> show #5 models
+> hide #5 models
+> show #5 models
+> vop add #14-18
+Opened volume sum as #21, grid size 137,97,251, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> show #!14 models
+> show #!15 models
+> show #!16 models
+> show #!17 models
+> show #!18 models
+> hide #!21 models
+> select add #18
+models selected
+> select add #17
+models selected
+> select add #16
+models selected
+> select add #15
+models selected
+> select add #14
+models selected
+> show #!21 models
+> close #22
+> ui mousemode right "translate selected models"
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14,-0.63241,-0.77464,0.00029696,461.15,0.77301,-0.63105,0.065083,90.292,-0.050228,0.041388,0.99788,2.0834,#15,-0.72045,-0.69323,0.01947,455.08,0.69215,-0.717,0.082751,143.79,-0.043406,0.073094,0.99638,25.159,#16,-0.8307,-0.55668,-0.0057957,435.35,0.55481,-0.82868,0.074052,207.25,-0.046026,0.0583,0.99724,4.4076,#17,-0.95354,0.29334,-0.068708,305.89,-0.29809,-0.95167,0.073937,365.75,-0.043699,0.090983,0.99489,-25.662,#18,-0.63824,0.75971,-0.12446,166.49,-0.76691,-0.64154,0.016756,391.47,-0.067117,0.10614,0.99208,3.9194
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14,-0.63241,-0.77464,0.00029696,459.69,0.77301,-0.63105,0.065083,180.99,-0.050228,0.041388,0.99788,1.887,#15,-0.72045,-0.69323,0.01947,453.62,0.69215,-0.717,0.082751,234.49,-0.043406,0.073094,0.99638,24.963,#16,-0.8307,-0.55668,-0.0057957,433.89,0.55481,-0.82868,0.074052,297.94,-0.046026,0.0583,0.99724,4.2111,#17,-0.95354,0.29334,-0.068708,304.44,-0.29809,-0.95167,0.073937,456.45,-0.043699,0.090983,0.99489,-25.858,#18,-0.63824,0.75971,-0.12446,165.03,-0.76691,-0.64154,0.016756,482.16,-0.067117,0.10614,0.99208,3.723
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14,-0.83753,-0.54606,-0.018963,469.18,0.54408,-0.83667,0.06286,263.21,-0.050192,0.04233,0.99784,1.7327,#15,-0.89682,-0.44236,-0.0060712,447.14,0.44029,-0.89378,0.085521,312.35,-0.043257,0.074023,0.99632,24.782,#16,-0.96009,-0.27833,-0.027495,409.04,0.27593,-0.95866,0.069552,366.78,-0.045717,0.059189,0.9972,4.0097,#17,-0.81778,0.56886,-0.087395,237.5,-0.57394,-0.81735,0.050312,478.4,-0.042812,0.091303,0.9949,-26.052,#18,-0.37488,0.91886,-0.12312,96.894,-0.92471,-0.38009,-0.021116,460.53,-0.066201,0.10594,0.99217,3.619
+> view matrix models
+> #14,-0.83682,-0.54616,-0.037918,472.9,0.54342,-0.83704,0.063718,263.2,-0.066539,0.032715,0.99725,6.8924,#15,-0.89615,-0.44304,-0.025016,450.4,0.43959,-0.89404,0.086386,312.34,-0.060638,0.066419,0.99595,29.477,#16,-0.95925,-0.27871,-0.046441,412.65,0.27518,-0.95881,0.070402,366.73,-0.06415,0.054754,0.99644,7.9373,#17,-0.8164,0.56762,-0.10627,241.64,-0.57458,-0.81685,0.051116,478.2,-0.057795,0.10279,0.99302,-25.469,#18,-0.37289,0.91696,-0.14189,100.5,-0.92504,-0.37932,-0.02034,460.25,-0.072474,0.12367,0.98967,1.5475
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14,-0.83682,-0.54616,-0.037918,457.05,0.54342,-0.83704,0.063718,251.76,-0.066539,0.032715,0.99725,6.8819,#15,-0.89615,-0.44304,-0.025016,434.55,0.43959,-0.89404,0.086386,300.91,-0.060638,0.066419,0.99595,29.466,#16,-0.95925,-0.27871,-0.046441,396.8,0.27518,-0.95881,0.070402,355.29,-0.06415,0.054754,0.99644,7.9268,#17,-0.8164,0.56762,-0.10627,225.79,-0.57458,-0.81685,0.051116,466.76,-0.057795,0.10279,0.99302,-25.48,#18,-0.37289,0.91696,-0.14189,84.656,-0.92504,-0.37932,-0.02034,448.81,-0.072474,0.12367,0.98967,1.5369
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14,-0.93929,-0.3393,-0.05111,448.87,0.33666,-0.94008,0.053867,313.4,-0.066324,0.03339,0.99724,6.7325,#15,-0.97318,-0.22583,-0.043759,415.69,0.22198,-0.97186,0.078892,356.08,-0.060344,0.067063,0.99592,29.307,#16,-0.99684,-0.051023,-0.06094,366.45,0.047468,-0.99716,0.058415,400.33,-0.063748,0.055337,0.99643,7.764,#17,-0.66264,0.7401,-0.11474,174.39,-0.74676,-0.66459,0.0259,469.52,-0.057089,0.10285,0.99306,-25.599,#18,-0.15049,0.97962,-0.133,41.164,-0.986,-0.15851,-0.051829,419.65,-0.071854,0.12334,0.98976,1.5033
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14,-0.93929,-0.3393,-0.05111,449.14,0.33666,-0.94008,0.053867,302.08,-0.066324,0.03339,0.99724,6.7573,#15,-0.97318,-0.22583,-0.043759,415.96,0.22198,-0.97186,0.078892,344.76,-0.060344,0.067063,0.99592,29.332,#16,-0.99684,-0.051023,-0.06094,366.72,0.047468,-0.99716,0.058415,389.01,-0.063748,0.055337,0.99643,7.7887,#17,-0.66264,0.7401,-0.11474,174.66,-0.74676,-0.66459,0.0259,458.2,-0.057089,0.10285,0.99306,-25.574,#18,-0.15049,0.97962,-0.133,41.436,-0.986,-0.15851,-0.051829,408.33,-0.071854,0.12334,0.98976,1.528
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14,-0.93885,-0.34002,-0.05423,449.75,0.3353,-0.93867,0.080481,296.71,-0.07827,0.057377,0.99528,5.9935,#15,-0.97284,-0.22668,-0.046859,416.53,0.22084,-0.96959,0.10546,339.99,-0.069339,0.092246,0.99332,27.316,#16,-0.9966,-0.051849,-0.064055,367.39,0.046317,-0.9953,0.085012,383.68,-0.068162,0.081756,0.99432,4.4435,#17,-0.66294,0.73933,-0.11787,175.48,-0.74764,-0.66203,0.052449,452.06,-0.039256,0.1229,0.99164,-31.364,#18,-0.15091,0.97912,-0.13617,42.137,-0.98748,-0.15572,-0.025329,403.01,-0.046004,0.13064,0.99036,-3.3653
+> view matrix models
+> #14,-0.96308,-0.26234,-0.060447,444.37,0.25762,-0.96326,0.075977,317.6,-0.078157,0.0576,0.99528,5.9371,#15,-0.98762,-0.14684,-0.055137,407.74,0.14076,-0.98483,0.10147,358.04,-0.069201,0.092454,0.99331,27.258,#16,-0.99707,0.029497,-0.070609,355.19,-0.035115,-0.9962,0.079691,397.57,-0.06799,0.081937,0.99432,4.387,#17,-0.59978,0.79088,-0.12159,158.35,-0.79922,-0.59951,0.042848,450.07,-0.039007,0.12288,0.99166,-31.398,#18,-0.069892,0.98858,-0.13348,29.449,-0.9965,-0.075335,-0.036164,390.31,-0.045807,0.13049,0.99039,-3.3662
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14,-0.96308,-0.26234,-0.060447,434.29,0.25762,-0.96326,0.075977,312.78,-0.078157,0.0576,0.99528,5.9252,#15,-0.98762,-0.14684,-0.055137,397.65,0.14076,-0.98483,0.10147,353.21,-0.069201,0.092454,0.99331,27.246,#16,-0.99707,0.029497,-0.070609,345.11,-0.035115,-0.9962,0.079691,392.74,-0.06799,0.081937,0.99432,4.3751,#17,-0.59978,0.79088,-0.12159,148.26,-0.79922,-0.59951,0.042848,445.25,-0.039007,0.12288,0.99166,-31.409,#18,-0.069892,0.98858,-0.13348,19.365,-0.9965,-0.075335,-0.036164,385.49,-0.045807,0.13049,0.99039,-3.3781
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14,-0.98698,-0.14539,-0.068851,423.63,0.14072,-0.98768,0.06849,342.23,-0.077961,0.057909,0.99527,5.839,#15,-0.99738,-0.028138,-0.066626,382.43,0.021771,-0.99529,0.094435,378,-0.068969,0.092738,0.9933,27.16,#16,-0.98575,0.1483,-0.079384,325.54,-0.15398,-0.98552,0.070963,410.97,-0.067712,0.082175,0.99432,4.2932,#17,-0.50003,0.85685,-0.1256,123.82,-0.86515,-0.50072,0.028294,439.57,-0.038647,0.12281,0.99168,-31.451,#18,0.049624,0.99054,-0.12797,2.9921,-0.99773,0.043322,-0.051573,364.85,-0.045541,0.13024,0.99044,-3.3702
+> hide #!6 models
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14,-0.98698,-0.14539,-0.068851,428.04,0.14072,-0.98768,0.06849,334.5,-0.077961,0.057909,0.99527,-8.0447,#15,-0.99738,-0.028138,-0.066626,386.84,0.021771,-0.99529,0.094435,370.28,-0.068969,0.092738,0.9933,13.276,#16,-0.98575,0.1483,-0.079384,329.94,-0.15398,-0.98552,0.070963,403.24,-0.067712,0.082175,0.99432,-9.5905,#17,-0.50003,0.85685,-0.1256,128.23,-0.86515,-0.50072,0.028294,431.85,-0.038647,0.12281,0.99168,-45.335,#18,0.049624,0.99054,-0.12797,7.3946,-0.99773,0.043322,-0.051573,357.13,-0.045541,0.13024,0.99044,-17.254
+> show #!6 models
+> view matrix models
+> #14,-0.98698,-0.14539,-0.068851,426.3,0.14072,-0.98768,0.06849,331.51,-0.077961,0.057909,0.99527,-13.156,#15,-0.99738,-0.028138,-0.066626,385.1,0.021771,-0.99529,0.094435,367.29,-0.068969,0.092738,0.9933,8.1645,#16,-0.98575,0.1483,-0.079384,328.21,-0.15398,-0.98552,0.070963,400.25,-0.067712,0.082175,0.99432,-14.702,#17,-0.50003,0.85685,-0.1256,126.49,-0.86515,-0.50072,0.028294,428.86,-0.038647,0.12281,0.99168,-50.447,#18,0.049624,0.99054,-0.12797,5.6572,-0.99773,0.043322,-0.051573,354.14,-0.045541,0.13024,0.99044,-22.366
+> view matrix models
+> #14,-0.98698,-0.14539,-0.068851,424.66,0.14072,-0.98768,0.06849,333.42,-0.077961,0.057909,0.99527,-13.475,#15,-0.99738,-0.028138,-0.066626,383.46,0.021771,-0.99529,0.094435,369.19,-0.068969,0.092738,0.9933,7.8463,#16,-0.98575,0.1483,-0.079384,326.57,-0.15398,-0.98552,0.070963,402.16,-0.067712,0.082175,0.99432,-15.02,#17,-0.50003,0.85685,-0.1256,124.85,-0.86515,-0.50072,0.028294,430.76,-0.038647,0.12281,0.99168,-50.765,#18,0.049624,0.99054,-0.12797,4.0215,-0.99773,0.043322,-0.051573,356.05,-0.045541,0.13024,0.99044,-22.684
+> fitmap #21 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 2890 points
+correlation = 0.6337, correlation about mean = 0.3483, overlap = 279.2
+steps = 44, shift = 0.161, angle = 0.0829 degrees
+Position of volume sum (#21) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99933615 -0.01594970 0.03275479 -5.39438354
+.01760431 0.99855042 -0.05086407 10.12324442
+-0.03189604 0.05140693 0.99816831 -2.67516804
+Axis 0.81452814 0.51490563 0.26723789
+Axis point 0.00000000 59.57191385 196.27758637
+Rotation angle (degrees) 3.59935568
+Shift along axis 0.10373211
+> fitmap #14 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.5699, correlation about mean = 0.09571, overlap = 58.25
+steps = 96, shift = 2.73, angle = 2.09 degrees
+Position of volume sum (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.97868214 -0.19352159 -0.06877974 430.25819480
+.18734385 -0.97841940 0.08716510 319.35143892
+-0.08416376 0.07242146 0.99381667 -10.88672943
+Axis -0.03865043 0.04032921 0.99843863
+Axis point 199.49734543 180.60663031 0.00000000
+Rotation angle (degrees) 169.00458036
+Shift along axis -14.62020787
+> view matrix models
+> #14,-0.98409,-0.1679,-0.058123,425.12,0.16187,-0.9821,0.09633,325.27,-0.073257,0.085388,0.99365,-16.125,#15,-0.99738,-0.028138,-0.066626,384.94,0.021771,-0.99529,0.094435,370.53,-0.068969,0.092738,0.9933,7.7473,#16,-0.98575,0.1483,-0.079384,328.04,-0.15398,-0.98552,0.070963,403.5,-0.067712,0.082175,0.99432,-15.119,#17,-0.50003,0.85685,-0.1256,126.33,-0.86515,-0.50072,0.028294,432.1,-0.038647,0.12281,0.99168,-50.864,#18,0.049624,0.99054,-0.12797,5.4952,-0.99773,0.043322,-0.051573,357.39,-0.045541,0.13024,0.99044,-22.783
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14,-0.98433,-0.16568,-0.060439,425.27,0.15899,-0.98195,0.10245,324.61,-0.076322,0.091232,0.9929,-16.299,#15,-0.99728,-0.025902,-0.068936,384.93,0.018887,-0.99475,0.10053,369.92,-0.071178,0.098955,0.99254,7.2036,#16,-0.98523,0.15053,-0.081639,328,-0.15682,-0.98462,0.077033,402.6,-0.068788,0.088698,0.99368,-15.989,#17,-0.49783,0.85781,-0.12774,126.29,-0.8666,-0.49783,0.034235,430.49,-0.034228,0.12775,0.99122,-52.332,#18,0.052155,0.99015,-0.12992,5.5836,-0.99787,0.046573,-0.045644,355.65,-0.039143,0.13202,0.99047,-24.032
+> view matrix models
+> #14,-0.98403,-0.17324,-0.040842,422.4,0.16775,-0.97938,0.11256,320.39,-0.059499,0.10391,0.99281,-21.656,#15,-0.99822,-0.033462,-0.049362,382.94,0.027827,-0.99346,0.11072,366.31,-0.052744,0.10915,0.99263,2.1511,#16,-0.98779,0.14283,-0.062264,325.9,-0.14796,-0.98513,0.087357,399.32,-0.04886,0.095502,0.99423,-20.294,#17,-0.50657,0.8553,-0.10881,123.81,-0.86204,-0.50484,0.044984,428.8,-0.016456,0.11659,0.99304,-53.139,#18,0.04196,0.99285,-0.11175,2.956,-0.99866,0.03828,-0.034873,355.41,-0.030346,0.11307,0.99312,-21.861
+> fitmap #14 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6384, correlation about mean = 0.2731, overlap = 64.42
+steps = 52, shift = 1.69, angle = 0.94 degrees
+Position of volume sum (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.97837784 -0.19618208 -0.06549342 429.72266519
+.18833103 -0.97593108 0.10995426 316.01437144
+-0.08548812 0.09524237 0.99177652 -14.49361899
+Axis -0.03818161 0.05189202 0.99792253
+Axis point 199.15099034 179.29354230 0.00000000
+Rotation angle (degrees) 168.89212778
+Shift along axis -14.47238775
+> select subtract #15
+models selected
+> select subtract #16
+models selected
+> select subtract #17
+models selected
+> select subtract #18
+models selected
+> view matrix models
+> #14,-0.98133,-0.18886,-0.036241,421.76,0.18613,-0.98018,0.067859,327.27,-0.048339,0.059847,0.99704,-17.437
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #14,-0.98199,-0.1881,-0.017672,418.11,0.18547,-0.97759,0.099592,320.77,-0.036009,0.094521,0.99487,-23.962
+> view matrix models
+> #14,-0.98273,-0.185,-0.0049978,415.27,0.18442,-0.98118,0.057148,329.77,-0.015476,0.055239,0.99835,-21.87
+> fitmap #14 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6679, correlation about mean = 0.2871, overlap = 72.77
+steps = 176, shift = 2.7, angle = 1.01 degrees
+Position of volume sum (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.97483730 -0.22112197 -0.02823636 425.14601940
+.21940111 -0.97414133 0.05396111 324.16539882
+-0.03943819 0.04640822 0.99814372 -17.10243063
+Axis -0.01713723 0.02541653 0.99953005
+Axis point 194.31407946 186.00916046 0.00000000
+Rotation angle (degrees) 167.26952190
+Shift along axis -16.14105876
+> fitmap #14 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6675, correlation about mean = 0.2863, overlap = 72.82
+steps = 48, shift = 0.0134, angle = 0.0971 degrees
+Position of volume sum (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.97446569 -0.22276852 -0.02812093 425.30424044
+.22104560 -0.97376073 0.05411897 323.84115186
+-0.03943906 0.04652107 0.99813844 -17.12479839
+Axis -0.01711148 0.02548994 0.99952862
+Axis point 194.27257148 186.03858124 0.00000000
+Rotation angle (degrees) 167.17278194
+Shift along axis -16.13961994
+> hide #!6 models
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14,-0.98014,-0.19759,-0.016594,421.58,0.19616,-0.97846,0.06436,321.73,-0.028953,0.059827,0.99779,-23.32
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14,-0.97891,-0.20269,-0.025492,423.9,0.19969,-0.97572,0.089969,315.79,-0.043108,0.082981,0.99562,-24.227
+> view matrix models
+> #14,-0.97908,-0.202,-0.024317,423.59,0.19924,-0.97612,0.086567,316.58,-0.041223,0.079911,0.99595,-24.116
+> ui mousemode right "translate selected models"
+> view matrix models
+> #14,-0.97908,-0.202,-0.024317,422.67,0.19924,-0.97612,0.086567,317.96,-0.041223,0.079911,0.99595,-21.761
+> show #!6 models
+> view matrix models
+> #14,-0.97908,-0.202,-0.024317,422.57,0.19924,-0.97612,0.086567,319.93,-0.041223,0.079911,0.99595,-22.202
+> fitmap #14 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.5972, correlation about mean = 0.1839, overlap = 59.69
+steps = 68, shift = 0.347, angle = 0.816 degrees
+Position of volume sum (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.97362990 -0.22415780 -0.04240383 430.24545454
+.21983479 -0.97154043 0.08821473 313.58871307
+-0.06097106 0.07656666 0.99519850 -16.89611004
+Axis -0.02620292 0.04176791 0.99878368
+Axis point 197.19841303 181.36500711 0.00000000
+Rotation angle (degrees) 167.15780131
+Shift along axis -15.05129983
+> fitmap #14 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.5972, correlation about mean = 0.1836, overlap = 59.71
+steps = 64, shift = 0.00527, angle = 0.25 degrees
+Position of volume sum (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.97458017 -0.21992021 -0.04276181 429.82801154
+.21559160 -0.97250980 0.08800530 314.39965832
+-0.06094042 0.07654914 0.99520173 -16.89952246
+Axis -0.02627310 0.04169010 0.99878509
+Axis point 197.29090560 181.27259060 0.00000000
+Rotation angle (degrees) 167.40718942
+Shift along axis -15.06455514
+> fitmap #14 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.5971, correlation about mean = 0.1833, overlap = 59.74
+steps = 44, shift = 0.007, angle = 0.182 degrees
+Position of volume sum (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.97525714 -0.21682866 -0.04311423 429.53383667
+.21248555 -0.97320205 0.08790705 314.98876080
+-0.06101962 0.07657083 0.99519521 -16.88652675
+Axis -0.02637331 0.04165625 0.99878386
+Axis point 197.36463696 181.20484730 0.00000000
+Rotation angle (degrees) 167.58925569
+Shift along axis -15.07296702
+> fitmap #14 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.5972, correlation about mean = 0.1832, overlap = 59.76
+steps = 60, shift = 0.00455, angle = 0.208 degrees
+Position of volume sum (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.97602309 -0.21329639 -0.04339998 429.17832918
+.20894604 -0.97397883 0.08778822 315.65141319
+-0.06099558 0.07661507 0.99519328 -16.89246971
+Axis -0.02642926 0.04162110 0.99878385
+Axis point 197.44047107 181.12318845 0.00000000
+Rotation angle (degrees) 167.79686443
+Shift along axis -15.07703436
+> view matrix models
+> #14,-0.98167,-0.18773,-0.032751,424.59,0.18379,-0.97811,0.097603,319.26,-0.050357,0.089795,0.99469,-20.521
+> fitmap #14 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.5971, correlation about mean = 0.1827, overlap = 59.78
+steps = 52, shift = 2.63, angle = 0.214 degrees
+Position of volume sum (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.97679762 -0.20965613 -0.04371159 428.81183166
+.20529883 -0.97476793 0.08763481 316.33476313
+-0.06098183 0.07662754 0.99519316 -16.89520946
+Axis -0.02649418 0.04156896 0.99878430
+Axis point 197.51943644 181.04020002 0.00000000
+Rotation angle (degrees) 168.01064132
+Shift along axis -15.08598272
+> fitmap #14 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.5968, correlation about mean = 0.1819, overlap = 59.82
+steps = 48, shift = 0.021, angle = 0.167 degrees
+Position of volume sum (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.97737548 -0.20684614 -0.04417960 428.56006351
+.20245759 -0.97536042 0.08765253 316.85515029
+-0.06122163 0.07672494 0.99517093 -16.85587630
+Axis -0.02666541 0.04158578 0.99877904
+Axis point 197.59734186 180.97335789 0.00000000
+Rotation angle (degrees) 168.17623546
+Shift along axis -15.08635700
+> view matrix models
+> #14,-0.98287,-0.18124,-0.033528,424.18,0.17727,-0.97933,0.097447,324.97,-0.050496,0.089834,0.99468,-21.592
+> fitmap #14 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6372, correlation about mean = 0.2719, overlap = 64.33
+steps = 68, shift = 4.47, angle = 1.79 degrees
+Position of volume sum (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.97691630 -0.20354902 -0.06482537 430.46886946
+.19571228 -0.97443697 0.11031449 314.63782226
+-0.08562265 0.09508090 0.99178040 -14.45682393
+Axis -0.03807514 0.05198114 0.99792196
+Axis point 198.99128200 179.46108193 0.00000000
+Rotation angle (degrees) 168.46033033
+Shift along axis -14.46171438
+> view matrix models
+> #14,-0.98255,-0.17773,-0.054779,424.48,0.17027,-0.97812,0.11955,318.8,-0.074828,0.10813,0.99132,-16.396
+> view matrix models
+> #14,-0.98255,-0.17773,-0.054779,427.56,0.17027,-0.97812,0.11955,317.07,-0.074828,0.10813,0.99132,-17.71
+> fitmap #14 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6394, correlation about mean = 0.2745, overlap = 64.48
+steps = 76, shift = 4.57, angle = 0.773 degrees
+Position of volume sum (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.97948563 -0.19037549 -0.06606863 429.13936146
+.18249931 -0.97705873 0.10977348 317.07739155
+-0.08545111 0.09546407 0.99175839 -14.51946764
+Axis -0.03829606 0.05187304 0.99791913
+Axis point 199.28334649 179.15369130 0.00000000
+Rotation angle (degrees) 169.23237955
+Shift along axis -14.47583327
+> fitmap #14 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6396, correlation about mean = 0.2738, overlap = 64.49
+steps = 36, shift = 0.0173, angle = 0.132 degrees
+Position of volume sum (#14) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.97991269 -0.18812364 -0.06618616 428.88538662
+.18026963 -0.97750892 0.10944934 317.52387553
+-0.08528757 0.09531944 0.99178638 -14.53796004
+Axis -0.03827595 0.05174309 0.99792665
+Axis point 199.31914672 179.11678284 0.00000000
+Rotation angle (degrees) 169.36339247
+Shift along axis -14.49414614
+> hide #!6 models
+> view matrix models
+> #14,-0.98516,-0.16223,-0.056117,422.25,0.15476,-0.9808,0.11865,322.02,-0.074289,0.1082,0.99135,-19.513
+> view matrix models
+> #14,-0.98516,-0.16223,-0.056117,422.61,0.15476,-0.9808,0.11865,318.44,-0.074289,0.1082,0.99135,-19.828
+> show #!6 models
+> view matrix models
+> #14,-0.98516,-0.16223,-0.056117,425.56,0.15476,-0.9808,0.11865,320.77,-0.074289,0.1082,0.99135,-18.515
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #14,-0.98524,-0.16475,-0.046544,424.07,0.16046,-0.98343,0.084346,327.04,-0.059668,0.075632,0.99535,-16.643
+> hide #!6 models
+> select add #15
+models selected
+> select subtract #14
+models selected
+> show #!6 models
+> view matrix models
+> #15,-0.99713,-0.061844,-0.043615,385.85,0.056546,-0.9919,0.11372,361.25,-0.050295,0.11093,0.99255,1.5393
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,-0.99713,-0.061844,-0.043615,387.25,0.056546,-0.9919,0.11372,359.82,-0.050295,0.11093,0.99255,8.1599
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6433, correlation about mean = 0.2459, overlap = 69.53
+steps = 72, shift = 4, angle = 1.82 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.99427415 -0.09391340 -0.05098215 391.24263012
+.08629041 -0.98703550 0.13533244 346.81787298
+-0.06303072 0.13015827 0.98948771 9.45101462
+Axis -0.02863712 0.06668450 0.99736307
+Axis point 187.91961091 181.98459820 0.00000000
+Rotation angle (degrees) 174.81682542
+Shift along axis 21.34940494
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,-0.99628,-0.072077,-0.047192,385.93,0.067013,-0.9926,0.10129,358.99,-0.054143,0.097748,0.99374,10.535
+> ui mousemode right "rotate selected models"
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,-0.99628,-0.072077,-0.047192,386.44,0.067013,-0.9926,0.10129,361.16,-0.054143,0.097748,0.99374,12.077
+> view matrix models
+> #15,-0.99628,-0.072077,-0.047192,387.02,0.067013,-0.9926,0.10129,362.21,-0.054143,0.097748,0.99374,11.544
+> view matrix models
+> #15,-0.99628,-0.072077,-0.047192,388.85,0.067013,-0.9926,0.10129,360.03,-0.054143,0.097748,0.99374,10.559
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #15,-0.99628,-0.072077,-0.047192,388.05,0.067013,-0.9926,0.10129,362.81,-0.054143,0.097748,0.99374,8.0871
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,-0.99691,-0.070251,-0.035253,385.54,0.066743,-0.99348,0.0924,364.72,-0.041515,0.089762,0.9951,7.1351
+> select subtract #15
+Nothing selected
+> select add #16
+models selected
+> fitmap #16 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6887, correlation about mean = 0.3556, overlap = 73.17
+steps = 76, shift = 4.25, angle = 2.38 degrees
+Position of volume sum (#16) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.99363534 0.10550640 -0.03946139 328.69450656
+-0.10768782 -0.99249242 0.05798373 396.92313252
+-0.03304748 0.06186419 0.99753730 -13.88635977
+Axis 0.01819031 -0.03006626 -0.99938238
+Axis point 174.84833929 189.87891793 0.00000000
+Rotation angle (degrees) 173.87701307
+Shift along axis 7.92284303
+> ui mousemode right "translate selected models"
+> view matrix models
+> #16,-0.99096,0.13122,-0.028035,319.91,-0.13286,-0.9888,0.067933,403.91,-0.018806,0.071044,0.9973,-16.171
+> fitmap #16 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6859, correlation about mean = 0.2917, overlap = 75.6
+steps = 76, shift = 3.41, angle = 2.39 degrees
+Position of volume sum (#16) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.99092563 0.10732564 -0.08091719 334.22320786
+-0.11237443 -0.99181320 0.06065106 402.25587413
+-0.07374533 0.06919372 0.99487378 -9.08456921
+Axis 0.03883324 -0.03260191 -0.99871372
+Axis point 178.05216341 192.05553226 0.00000000
+Rotation angle (degrees) 173.68517375
+Shift along axis 8.93754386
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #16,-0.98887,0.12914,-0.07389,327.06,-0.13555,-0.98671,0.08959,399.95,-0.061338,0.098608,0.99323,-16.19
+> ui mousemode right "translate selected models"
+> view matrix models
+> #16,-0.98887,0.12914,-0.07389,331,-0.13555,-0.98671,0.08959,400.84,-0.061338,0.098608,0.99323,-15.443
+> view matrix models
+> #16,-0.98887,0.12914,-0.07389,330.19,-0.13555,-0.98671,0.08959,401.09,-0.061338,0.098608,0.99323,-15.641
+> select subtract #16
+Nothing selected
+> select add #17
+models selected
+> view matrix models
+> #17,-0.50657,0.8553,-0.10881,121.22,-0.86204,-0.50484,0.044984,431.05,-0.016456,0.11659,0.99304,-53.636
+> view matrix models
+> #17,-0.50657,0.8553,-0.10881,126.04,-0.86204,-0.50484,0.044984,435.51,-0.016456,0.11659,0.99304,-48.782
+> view matrix models
+> #17,-0.50657,0.8553,-0.10881,124.8,-0.86204,-0.50484,0.044984,436.28,-0.016456,0.11659,0.99304,-47.194
+> fitmap #17 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6413, correlation about mean = 0.2082, overlap = 71.24
+steps = 80, shift = 3.62, angle = 1.81 degrees
+Position of volume sum (#17) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.53196474 0.84160082 -0.09338927 129.86623353
+-0.84620167 -0.53239449 0.02233456 439.03721975
+-0.03092315 0.09090736 0.99537912 -40.87723232
+Axis 0.04056723 -0.03695456 -0.99849319
+Axis point 185.49717830 184.79095565 0.00000000
+Rotation angle (degrees) 122.30933466
+Shift along axis 29.85952369
+> view matrix models
+> #17,-0.51087,0.85583,-0.081072,120.02,-0.85953,-0.51015,0.030925,436.17,-0.014892,0.085483,0.99623,-41.382
+> view matrix models
+> #17,-0.51087,0.85583,-0.081072,121.13,-0.85953,-0.51015,0.030925,436.77,-0.014892,0.085483,0.99623,-43.66
+> view matrix models
+> #17,-0.51087,0.85583,-0.081072,122.14,-0.85953,-0.51015,0.030925,437.36,-0.014892,0.085483,0.99623,-41.736
+> select subtract #17
+Nothing selected
+> select add #18
+models selected
+> view matrix models
+> #18,0.04196,0.99285,-0.11175,6.3004,-0.99866,0.03828,-0.034873,364.41,-0.030346,0.11307,0.99312,-17.431
+> view matrix models
+> #18,0.04196,0.99285,-0.11175,0.28372,-0.99866,0.03828,-0.034873,363.56,-0.030346,0.11307,0.99312,-15.704
+> view matrix models
+> #18,0.04196,0.99285,-0.11175,0.63546,-0.99866,0.03828,-0.034873,366.71,-0.030346,0.11307,0.99312,-15.951
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.682, correlation about mean = 0.2963, overlap = 72.54
+steps = 88, shift = 2.96, angle = 4.1 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.06651991 0.99500516 -0.07442962 -7.35340603
+-0.99720633 0.06375579 -0.03891905 361.76373847
+-0.03397932 0.07681056 0.99646647 -11.34311520
+Axis 0.05798135 -0.02026588 -0.99811195
+Axis point 189.12889414 185.03230642 0.00000000
+Rotation angle (degrees) 86.36666919
+Shift along axis 3.56387728
+> view matrix models
+> #18,0.091134,0.994,-0.060566,-14.317,-0.99554,0.08946,-0.029819,356.41,-0.024222,0.063013,0.99772,-11.977
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.6962, correlation about mean = 0.3166, overlap = 74.52
+steps = 68, shift = 1.44, angle = 2.04 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.10195306 0.99218343 -0.07195520 -12.70649362
+-0.99420866 0.09915592 -0.04143893 356.53224173
+-0.03398023 0.07576330 0.99654662 -11.19899088
+Axis 0.05888940 -0.01908090 -0.99808214
+Axis point 190.58032205 185.52024898 0.00000000
+Rotation angle (degrees) 84.32832595
+Shift along axis 3.62627890
+> select subtract #18
+Nothing selected
+> vop add #14-18
+Opened volume sum as #22, grid size 136,93,248, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> show #!14 models
+> hide #!14 models
+> select add #14
+models selected
+> show #!14 models
+> select subtract #14
+Nothing selected
+> show #!15 models
+> show #!16 models
+> show #!17 models
+> show #!18 models
+> show #!19 models
+> hide #!19 models
+> select add #18
+models selected
+> select subtract #18
+Nothing selected
+> select add #17
+models selected
+> select subtract #17
+Nothing selected
+> select add #18
+models selected
+> view matrix models
+> #18,0.12648,0.99027,-0.058028,-21.694,-0.99166,0.12476,-0.032276,319.08,-0.024722,0.061626,0.99779,-10.437
+> view matrix models
+> #18,0.12648,0.99027,-0.058028,-20.843,-0.99166,0.12476,-0.032276,317.73,-0.024722,0.061626,0.99779,19.019
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.7561, correlation about mean = 0.4471, overlap = 98.3
+steps = 68, shift = 1.01, angle = 1.31 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.10925753 0.99063568 -0.08187606 -12.73308883
+-0.99265312 0.10442942 -0.06110834 326.29482758
+-0.05198582 0.08795105 0.99476730 19.74243154
+Axis 0.07493785 -0.01502696 -0.99707498
+Axis point 175.83141012 169.02230266 0.00000000
+Rotation angle (degrees) 84.01736009
+Shift along axis -25.54209451
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,0.13335,0.98703,-0.089433,-14.365,-0.98984,0.12815,-0.06159,322.22,-0.04933,0.096737,0.99409,18.368
+> view matrix models
+> #18,0.13339,0.98766,-0.082076,-15.906,-0.98994,0.12884,-0.058449,321.52,-0.047153,0.089046,0.99491,19.023
+> view matrix models
+> #18,0.49372,0.86302,-0.10694,-45.856,-0.86957,0.48852,-0.072148,253.22,-0.010024,0.12861,0.99164,8.3244
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 427 points
+correlation = 0.7535, correlation about mean = 0.4191, overlap = 92.39
+steps = 76, shift = 1.93, angle = 1.94 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.46718090 0.87952503 -0.09043050 -46.01544108
+-0.88395576 0.46241512 -0.06924175 257.53630788
+-0.01908342 0.11228497 0.99349273 11.40114038
+Axis 0.10231272 -0.04021289 -0.99393915
+Axis point 190.14126922 164.43609596 0.00000000
+Rotation angle (degrees) 62.51319103
+Shift along axis -26.39628422
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,0.48898,0.86899,-0.075836,-52.3,-0.87215,0.48547,-0.060564,252.45,-0.015813,0.095755,0.99528,12.186
+> view matrix models
+> #18,0.48898,0.86899,-0.075836,-52.935,-0.87215,0.48547,-0.060564,250.22,-0.015813,0.095755,0.99528,13.38
+> view matrix models
+> #18,0.48898,0.86899,-0.075836,-53.891,-0.87215,0.48547,-0.060564,251.86,-0.015813,0.095755,0.99528,13.471
+> view matrix models
+> #18,0.48898,0.86899,-0.075836,-54.536,-0.87215,0.48547,-0.060564,251.73,-0.015813,0.095755,0.99528,11.801
+> select subtract #18
+Nothing selected
+> vop add #18,21,22
+Opened volume sum as #23, grid size 229,205,280, pixel 1.07,1.07,1.07, shown
+at step 1, values float32
+> show #!21 models
+> hide #!21 models
+> hide #!23 models
+> show #!21 models
+> hide #!21 models
+> close #21
+> show #!22 models
+> hide #!22 models
+> close #22
+> show #!23 models
+> hide #!23 models
+> show #!18 models
+> close #14-18
+> show #!200.1 models
+> show #!200.2 models
+> show #!200.3 models
+> show #!200.4 models
+> show #!200.5 models
+> show #!23 models
+> select add #200.1
+models selected
+> view matrix models
+> #200.1,0.9981,-0.040324,0.046673,37.286,0.042097,0.9984,-0.03764,-2.449,-0.045081,0.039533,0.9982,-181.42
+> view matrix models
+> #200.1,0.9981,-0.040324,0.046673,29.327,0.042097,0.9984,-0.03764,-37.479,-0.045081,0.039533,0.9982,-175.87
+> view matrix models
+> #200.1,0.9981,-0.040324,0.046673,21.575,0.042097,0.9984,-0.03764,-35.037,-0.045081,0.039533,0.9982,-173.86
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #200.1,0.93945,-0.32744,0.10112,60.607,0.33228,0.94253,-0.035004,-69.271,-0.083844,0.066484,0.99426,-171.38
+> ui mousemode right "translate selected models"
+> view matrix models
+> #200.1,0.93945,-0.32744,0.10112,56.972,0.33228,0.94253,-0.035004,-57.892,-0.083844,0.066484,0.99426,-174.42
+> view matrix models
+> #200.1,0.93945,-0.32744,0.10112,65.351,0.33228,0.94253,-0.035004,-59.806,-0.083844,0.066484,0.99426,-172.73
+> view matrix models
+> #200.1,0.93945,-0.32744,0.10112,70.613,0.33228,0.94253,-0.035004,-57.607,-0.083844,0.066484,0.99426,-172.52
+> view matrix models
+> #200.1,0.93945,-0.32744,0.10112,68.28,0.33228,0.94253,-0.035004,-54.503,-0.083844,0.066484,0.99426,-172.86
+> view matrix models
+> #200.1,0.93945,-0.32744,0.10112,68.279,0.33228,0.94253,-0.035004,-54.57,-0.083844,0.066484,0.99426,-173.11
+> vop add #23,200.1
+Opened T137_glycan.mrc resampled as #14, grid size 11,10,9, pixel
+.07,1.07,1.07, shown at step 1, values float32
+> hide #!14 models
+> show #!14 models
+> hide #!23 models
+> select subtract #200.1
+Nothing selected
+> show #!200.1 models
+> hide #!200.1 models
+> show #!200.1 models
+> show #!23 models
+> hide #!14 models
+> show #!14 models
+> close #14
+> close #200
+> color #23 #e93323ff models
+> color #23 #ff1721ff models
+> color #23 #e93323ff models
+> color #30 #e93323ff models
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/T137_glycan_all.mrc
+> models #23
+> rename #23 id #32
+> hide #!32 models
+> color #5 #fff6b6ff
+> select #5/B-z,1-9,0,AA-Al:152
+atoms, 495 bonds, 99 residues, 1 model selected
+> select #5/B-z,1-9,0,AA-Al:152
+atoms, 495 bonds, 99 residues, 1 model selected
+> color sel hot pink
+> color sel blue
+> color sel red
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S152_glycan.mrc
+Opened S152_glycan.mrc as #14, grid size 9,11,10, pixel 1.07,1.07,1.07, shown
+at level 0.994, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S152_glycan.mrc
+Opened S152_glycan.mrc as #15, grid size 9,11,10, pixel 1.07,1.07,1.07, shown
+at level 0.994, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S152_glycan.mrc
+Opened S152_glycan.mrc as #16, grid size 9,11,10, pixel 1.07,1.07,1.07, shown
+at level 0.994, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S152_glycan.mrc
+Opened S152_glycan.mrc as #17, grid size 9,11,10, pixel 1.07,1.07,1.07, shown
+at level 0.994, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S152_glycan.mrc
+Opened S152_glycan.mrc as #18, grid size 9,11,10, pixel 1.07,1.07,1.07, shown
+at level 0.994, step 1, values float32
+> show #!19 models
+> select add #14
+atoms, 495 bonds, 99 residues, 3 models selected
+> select add #15
+atoms, 495 bonds, 99 residues, 5 models selected
+> select add #16
+atoms, 495 bonds, 99 residues, 7 models selected
+> select add #17
+atoms, 495 bonds, 99 residues, 9 models selected
+> select add #18
+atoms, 495 bonds, 99 residues, 11 models selected
+> select add #19
+atoms, 495 bonds, 99 residues, 13 models selected
+> ui mousemode right select
+> select #6
+models selected
+> select clear
+> volume #14 level 0.055
+> volume #15 level 0.055
+> volume #16 level 0.055
+> volume #17 level 0.05
+> volume #17 level 0.055
+> volume #18 level 0.055
+> rename #14-19 id #19
+> hide #!19 models
+> show #!19 models
+> color #19 #e93323ff models
+> select add #19
+models selected
+> select clear
+> select add #19.1
+models selected
+> select subtract #19.1
+Nothing selected
+> fitmap #19.1 inMap #6
+Fit map S152_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 43 points
+correlation = 0.9942, correlation about mean = 0.9432, overlap = 28.51
+steps = 68, shift = 1.89, angle = 10.6 degrees
+Position of S152_glycan.mrc (#19.1) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.98272311 -0.02059835 -0.18393206 41.54180560
+.00916429 0.99798408 -0.06279961 10.44783121
+.18485483 0.06002902 0.98093078 -44.29914022
+Axis 0.31507317 -0.94599168 0.07634546
+Axis point 260.37668972 0.00000000 201.69969011
+Rotation angle (degrees) 11.24009642
+Shift along axis -0.17689138
+> fitmap #19.1 inMap #6
+Fit map S152_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 43 points
+correlation = 0.994, correlation about mean = 0.9408, overlap = 28.49
+steps = 48, shift = 0.00797, angle = 0.258 degrees
+Position of S152_glycan.mrc (#19.1) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.98213716 -0.01797171 -0.18730619 41.94061680
+.00663051 0.99811571 -0.06100056 10.63581542
+.18804954 0.05866898 0.98040569 -44.70042274
+Axis 0.30316203 -0.95089869 0.06232546
+Axis point 258.43875873 0.00000000 199.56722814
+Rotation angle (degrees) 11.38314382
+Shift along axis -0.18475456
+> select add #19.2
+models selected
+> select add #19.3
+models selected
+> select add #19.4
+models selected
+> select add #19.5
+models selected
+> select add #19.6
+models selected
+> ui mousemode right "translate selected models"
+> view matrix models
+> #19.2,1,0,0,-0.67254,0,1,0,-2.2856,0,0,1,52.318,#19.3,1,0,0,-0.67254,0,1,0,-2.2856,0,0,1,52.318,#19.4,1,0,0,-0.67254,0,1,0,-2.2856,0,0,1,52.318,#19.5,1,0,0,-0.67254,0,1,0,-2.2856,0,0,1,52.318,#19.6,0.9996,-0.025113,0.012944,1.0262,0.02497,0.99963,0.011123,-8.269,-0.013218,-0.010796,0.99985,56.286
+> fitmap #19.2 inMap #6
+Fit map S152_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 43 points
+correlation = 0.9394, correlation about mean = 0.4995, overlap = 23.17
+steps = 68, shift = 3.25, angle = 17.8 degrees
+Position of S152_glycan.mrc (#19.2) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.95253617 0.27998552 0.11951131 -53.28422953
+-0.29030334 0.95360783 0.07972505 52.92901394
+-0.09164506 -0.11063553 0.98962668 89.25195396
+Axis -0.29873449 0.33136951 -0.89495919
+Axis point 191.78632233 272.35117431 0.00000000
+Rotation angle (degrees) 18.57898452
+Shift along axis -46.41995797
+> fitmap #19.2 inMap #6
+Fit map S152_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 43 points
+correlation = 0.9393, correlation about mean = 0.4984, overlap = 23.16
+steps = 36, shift = 0.00555, angle = 0.0658 degrees
+Position of S152_glycan.mrc (#19.2) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.95240034 0.27996006 0.12064810 -53.46382930
+-0.29041103 0.95356991 0.07978632 52.94386129
+-0.09270942 -0.11102606 0.98948379 89.55886211
+Axis -0.29900184 0.33432995 -0.89376808
+Axis point 192.00902969 273.12690895 0.00000000
+Rotation angle (degrees) 18.60743346
+Shift along axis -46.35835023
+> hide #!6 models
+> show #!6 models
+> select subtract #19.2
+models selected
+> view matrix models
+> #19.3,1,0,0,-1.5914,0,1,0,-4.6641,0,0,1,104.97,#19.4,1,0,0,-1.5914,0,1,0,-4.6641,0,0,1,104.97,#19.5,1,0,0,-1.5914,0,1,0,-4.6641,0,0,1,104.97,#19.6,0.9996,-0.025113,0.012944,0.10729,0.02497,0.99963,0.011123,-10.647,-0.013218,-0.010796,0.99985,108.94
+> view matrix models
+> #19.3,1,0,0,-1.1747,0,1,0,-4.0201,0,0,1,105.28,#19.4,1,0,0,-1.1747,0,1,0,-4.0201,0,0,1,105.28,#19.5,1,0,0,-1.1747,0,1,0,-4.0201,0,0,1,105.28,#19.6,0.9996,-0.025113,0.012944,0.52397,0.02497,0.99963,0.011123,-10.003,-0.013218,-0.010796,0.99985,109.25
+> fitmap #19.3 inMap #6
+Fit map S152_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 43 points
+correlation = 0.9412, correlation about mean = 0.3809, overlap = 22.96
+steps = 88, shift = 5.82, angle = 61.9 degrees
+Position of S152_glycan.mrc (#19.3) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.56943606 0.17393608 -0.80342319 215.74568163
+.24693181 0.89602658 0.36900008 -110.64912025
+.78407096 -0.40851269 0.46727949 94.37679218
+Axis -0.43947676 -0.89730587 0.04125968
+Axis point 48.11214512 0.00000000 247.32480486
+Rotation angle (degrees) 62.20100925
+Shift along axis 8.36484848
+> fitmap #19.3 inMap #6
+Fit map S152_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 43 points
+correlation = 0.9406, correlation about mean = 0.3745, overlap = 22.96
+steps = 44, shift = 0.0149, angle = 0.221 degrees
+Position of S152_glycan.mrc (#19.3) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.57025409 0.17034886 -0.80361156 216.11009609
+.24958016 0.89609047 0.36705806 -110.86564874
+.78263658 -0.40988187 0.46848356 94.65338462
+Axis -0.43942651 -0.89716008 0.04481213
+Axis point 48.00585569 0.00000000 248.03147024
+Rotation angle (degrees) 62.13343213
+Shift along axis 8.74134814
+> select subtract #19.3
+models selected
+> view matrix models
+> #19.4,1,0,0,18.113,0,1,0,-49.64,0,0,1,-8.1886,#19.5,1,0,0,18.113,0,1,0,-49.64,0,0,1,-8.1886,#19.6,0.9996,-0.025113,0.012944,19.811,0.02497,0.99963,0.011123,-55.624,-0.013218,-0.010796,0.99985,-4.2198
+> select subtract #19.4
+models selected
+> select subtract #19.5
+models selected
+> select subtract #19.6
+Nothing selected
+> select add #19.1
+models selected
+> select subtract #19.1
+Nothing selected
+> select add #19.2
+models selected
+> select subtract #19.2
+Nothing selected
+> select add #19.3
+models selected
+> view matrix models
+> #19.3,0.57385,0.14246,-0.80648,222.36,0.27235,0.89551,0.35197,-112.13,0.77235,-0.42162,0.47509,96.078
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #19.3,0.90951,-0.40443,-0.096037,90.044,0.38273,0.72464,0.57307,-154.5,-0.16217,-0.55797,0.81386,252.14
+> view matrix models
+> #19.3,0.94627,0.12016,0.30022,-64.726,-0.25699,0.84294,0.47266,-13.612,-0.19627,-0.52442,0.82853,252.13
+> view matrix models
+> #19.3,0.77744,0.35447,0.51956,-101.91,-0.38345,0.92191,-0.055205,102.93,-0.49856,-0.1563,0.85265,262.44
+> view matrix models
+> #19.3,0.84663,0.37171,0.38084,-92.907,-0.36232,0.92677,-0.099095,106.03,-0.38979,-0.054091,0.91931,212.36
+> fitmap #19.3 inMap #6
+Fit map S152_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 43 points
+correlation = 0.9412, correlation about mean = 0.381, overlap = 22.97
+steps = 76, shift = 2.71, angle = 87.5 degrees
+Position of S152_glycan.mrc (#19.3) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.56971336 0.17329219 -0.80336574 215.76456146
+.24693781 0.89625266 0.36844658 -110.57580181
+.78386759 -0.40829031 0.46781473 94.28918679
+Axis -0.43917423 -0.89743641 0.04163991
+Axis point 48.12137526 0.00000000 247.39520508
+Rotation angle (degrees) 62.16736734
+Shift along axis 8.40270993
+> fitmap #19.3 inMap #6
+Fit map S152_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 43 points
+correlation = 0.9407, correlation about mean = 0.3757, overlap = 22.96
+steps = 44, shift = 0.0118, angle = 0.153 degrees
+Position of S152_glycan.mrc (#19.3) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.57031460 0.17092296 -0.80344671 215.98526564
+.24891788 0.89616029 0.36733721 -110.78481268
+.78280340 -0.40949002 0.46854751 94.55017788
+Axis -0.43938830 -0.89721333 0.04411541
+Axis point 48.00083584 0.00000000 247.89239915
+Rotation angle (degrees) 62.12713604
+Shift along axis 8.66733173
+> view matrix models
+> #19.3,0.88289,0.20316,-0.42335,74.163,-0.25451,0.96469,-0.067846,73.473,0.39462,0.16765,0.90342,16.639
+> view matrix models
+> #19.3,0.96738,0.20884,0.14341,-52.274,-0.22524,0.96812,0.10957,33.058,-0.11596,-0.13829,0.98358,153.44
+> ui mousemode right "translate selected models"
+> view matrix models
+> #19.3,0.96738,0.20884,0.14341,-50.201,-0.22524,0.96812,0.10957,33.998,-0.11596,-0.13829,0.98358,99.83
+> fitmap #19.3 inMap #6
+Fit map S152_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 43 points
+correlation = 0.9395, correlation about mean = 0.5011, overlap = 23.2
+steps = 52, shift = 1.11, angle = 2.91 degrees
+Position of S152_glycan.mrc (#19.3) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.95287352 0.28049338 0.11556616 -52.68978182
+-0.29050514 0.95341991 0.08122345 52.71817817
+-0.08740044 -0.11096824 0.98997335 88.32074896
+Axis -0.30230914 0.31925759 -0.89815576
+Axis point 189.37742385 269.85291560 0.00000000
+Rotation angle (degrees) 18.53432768
+Shift along axis -46.56650796
+> view matrix models
+> #19.3,0.95867,0.25497,0.12625,-53.029,-0.26753,0.95886,0.094958,45.531,-0.096843,-0.12481,0.98744,144.36
+> select subtract #19.3
+Nothing selected
+> select add #19.4
+models selected
+> select add #19.5
+models selected
+> select add #19.6
+models selected
+> view matrix models
+> #19.4,1,0,0,14.658,0,1,0,-50.481,0,0,1,-53.15,#19.5,1,0,0,14.658,0,1,0,-50.481,0,0,1,-53.15,#19.6,0.9996,-0.025113,0.012944,16.357,0.02497,0.99963,0.011123,-56.465,-0.013218,-0.010796,0.99985,-49.181
+> view matrix models
+> #19.4,1,0,0,33.045,0,1,0,-17.142,0,0,1,-53.444,#19.5,1,0,0,33.045,0,1,0,-17.142,0,0,1,-53.444,#19.6,0.9996,-0.025113,0.012944,34.744,0.02497,0.99963,0.011123,-23.126,-0.013218,-0.010796,0.99985,-49.475
+> view matrix models
+> #19.4,1,0,0,-4.3965,0,1,0,-6.401,0,0,1,-49.558,#19.5,1,0,0,-4.3965,0,1,0,-6.401,0,0,1,-49.558,#19.6,0.9996,-0.025113,0.012944,-2.6978,0.02497,0.99963,0.011123,-12.384,-0.013218,-0.010796,0.99985,-45.59
+> view matrix models
+> #19.4,1,0,0,-1.8557,0,1,0,-1.0378,0,0,1,-51.86,#19.5,1,0,0,-1.8557,0,1,0,-1.0378,0,0,1,-51.86,#19.6,0.9996,-0.025113,0.012944,-0.15699,0.02497,0.99963,0.011123,-7.0211,-0.013218,-0.010796,0.99985,-47.891
+> view matrix models
+> #19.4,1,0,0,0.68014,0,1,0,0.23108,0,0,1,-52.263,#19.5,1,0,0,0.68014,0,1,0,0.23108,0,0,1,-52.263,#19.6,0.9996,-0.025113,0.012944,2.3789,0.02497,0.99963,0.011123,-5.7523,-0.013218,-0.010796,0.99985,-48.294
+> fitmap #19.4 inMap #6
+Fit map S152_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 43 points
+correlation = 0.9612, correlation about mean = 0.7158, overlap = 27.29
+steps = 68, shift = 2.13, angle = 55.7 degrees
+Position of S152_glycan.mrc (#19.4) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.56554103 -0.02051636 -0.82446493 254.85844213
+-0.14544373 0.98154085 -0.12419211 58.69245610
+.81179398 0.19014899 0.55211765 -168.13168543
+Axis 0.18813175 -0.97929368 -0.07476847
+Axis point 292.07873798 0.00000000 154.51251543
+Rotation angle (degrees) 56.66044056
+Shift along axis 3.04076297
+> select subtract #19.4
+models selected
+> view matrix models
+> #19.5,1,0,0,3.8097,0,1,0,-7.7264,0,0,1,-102.88,#19.6,0.9996,-0.025113,0.012944,5.5084,0.02497,0.99963,0.011123,-13.71,-0.013218,-0.010796,0.99985,-98.907
+> select subtract #19.5
+models selected
+> select subtract #19.6
+Nothing selected
+> select add #19.4
+models selected
+> view matrix models
+> #19.4,0.57945,-0.042741,-0.81389,251.89,-0.12233,0.98275,-0.1387,55.912,0.80578,0.17993,0.56422,-168.12
+> view matrix models
+> #19.4,0.57945,-0.042741,-0.81389,253.38,-0.12233,0.98275,-0.1387,56.031,0.80578,0.17993,0.56422,-168.33
+> view matrix models
+> #19.4,0.57945,-0.042741,-0.81389,251.46,-0.12233,0.98275,-0.1387,70.995,0.80578,0.17993,0.56422,-117.29
+> view matrix models
+> #19.4,0.57945,-0.042741,-0.81389,258.8,-0.12233,0.98275,-0.1387,66.281,0.80578,0.17993,0.56422,-118.93
+> view matrix models
+> #19.4,0.57945,-0.042741,-0.81389,250.01,-0.12233,0.98275,-0.1387,62.326,0.80578,0.17993,0.56422,-118.4
+> fitmap #19.4 inMap #6
+Fit map S152_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 43 points
+correlation = 0.8782, correlation about mean = 0.3364, overlap = 19.46
+steps = 84, shift = 3.41, angle = 47.5 degrees
+Position of S152_glycan.mrc (#19.4) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.11410758 -0.10601980 -0.98779515 443.87346525
+.26001248 0.95644478 -0.13269095 -19.03620498
+.95883939 -0.27198011 -0.08157113 35.68406032
+Axis -0.07014823 -0.98035611 0.18433968
+Axis point 205.98774803 0.00000000 216.61101595
+Rotation angle (degrees) 96.86999691
+Shift along axis -5.89669193
+> view matrix models
+> #19.4,-0.10823,-0.13354,-0.98512,448.4,0.26759,0.95045,-0.15824,-14.48,0.95743,-0.28074,-0.067133,34.377
+> view matrix models
+> #19.4,-0.10823,-0.13354,-0.98512,445.47,0.26759,0.95045,-0.15824,-21.105,0.95743,-0.28074,-0.067133,34.101
+> fitmap #19.4 inMap #6
+Fit map S152_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 43 points
+correlation = 0.9941, correlation about mean = 0.9425, overlap = 28.51
+steps = 124, shift = 1.83, angle = 86.6 degrees
+Position of S152_glycan.mrc (#19.4) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.98249868 -0.01916007 -0.18528154 41.64682683
+.00784540 0.99806954 -0.06160886 10.49369042
+.18610429 0.05907702 0.98075232 -44.40329614
+Axis 0.30831607 -0.94877893 0.06899085
+Axis point 259.27240069 0.00000000 200.58380125
+Rotation angle (degrees) 11.28665764
+Shift along axis -0.17922769
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #19.4,0.98431,-0.043491,-0.17101,47.071,0.034458,0.99787,-0.055446,-1.6988,0.17305,0.048683,0.98371,-91.32
+> view matrix models
+> #19.4,0.98431,-0.043491,-0.17101,47.553,0.034458,0.99787,-0.055446,3.657,0.17305,0.048683,0.98371,-93.031
+> view matrix models
+> #19.4,0.98431,-0.043491,-0.17101,44.347,0.034458,0.99787,-0.055446,5.2786,0.17305,0.048683,0.98371,-93.24
+> fitmap #19.4 inMap #6
+Fit map S152_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 43 points
+correlation = 0.9613, correlation about mean = 0.7156, overlap = 27.26
+steps = 56, shift = 1.01, angle = 45.8 degrees
+Position of S152_glycan.mrc (#19.4) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.56385259 -0.02307096 -0.82555314 255.79828418
+-0.14481562 0.98136034 -0.12633419 58.98873510
+.81307976 0.19078685 0.55000153 -168.09794002
+Axis 0.18949897 -0.97918211 -0.07274979
+Axis point 292.16512937 0.00000000 154.82193649
+Rotation angle (degrees) 56.79698666
+Shift along axis 2.94188686
+> view matrix models
+> #19.4,0.57776,-0.045281,-0.81495,254.67,-0.12173,0.98251,-0.14089,56.288,0.80708,0.1806,0.56214,-168.29
+> view matrix models
+> #19.4,0.57776,-0.045281,-0.81495,253.78,-0.12173,0.98251,-0.14089,56.537,0.80708,0.1806,0.56214,-168.6
+> view matrix models
+> #19.4,0.57776,-0.045281,-0.81495,254.09,-0.12173,0.98251,-0.14089,55.858,0.80708,0.1806,0.56214,-168.72
+> view matrix models
+> #19.4,0.57776,-0.045281,-0.81495,253.7,-0.12173,0.98251,-0.14089,55.571,0.80708,0.1806,0.56214,-168.69
+> view matrix models
+> #19.4,0.57776,-0.045281,-0.81495,253.76,-0.12173,0.98251,-0.14089,56.257,0.80708,0.1806,0.56214,-168.48
+> select add #19.5
+models selected
+> select subtract #19.4
+models selected
+> select add #19.6
+models selected
+> view matrix models
+> #19.5,1,0,0,1.042,0,1,0,-3.8794,0,0,1,-102.78,#19.6,0.9996,-0.025113,0.012944,2.7407,0.02497,0.99963,0.011123,-9.8627,-0.013218,-0.010796,0.99985,-98.811
+> fitmap #19.5 inMap #6
+Fit map S152_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 43 points
+correlation = 0.917, correlation about mean = 0.3736, overlap = 21.67
+steps = 104, shift = 5.08, angle = 85 degrees
+Position of S152_glycan.mrc (#19.5) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.27453799 0.02400113 -0.96127667 337.54041136
+.65980942 0.72250800 0.20647933 -143.09437823
+.69948582 -0.69094582 0.18251973 -2.61080875
+Axis -0.45053211 -0.83374845 0.31919325
+Axis point 202.10739844 0.00000000 182.86166188
+Rotation angle (degrees) 84.84888454
+Shift along axis -33.60143046
+> fitmap #19.5 inMap #6
+Fit map S152_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 43 points
+correlation = 0.9174, correlation about mean = 0.3745, overlap = 21.68
+steps = 44, shift = 0.00886, angle = 0.152 degrees
+Position of S152_glycan.mrc (#19.5) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.27527660 0.02214067 -0.96111008 337.61051772
+.66124048 0.72133375 0.20600641 -143.14757996
+.69784226 -0.69223363 0.18392600 -2.34121705
+Axis -0.45096107 -0.83287639 0.32085982
+Axis point 201.97517585 0.00000000 183.12433639
+Rotation angle (degrees) 84.82096491
+Shift along axis -33.77616387
+> view matrix models
+> #19.5,0.26754,-0.0049401,-0.96353,341.65,0.67554,0.71401,0.18391,-143.06,0.68707,-0.70011,0.19436,-3.3011,#19.6,0.9996,-0.025113,0.012944,1.6142,0.02497,0.99963,0.011123,-12.305,-0.013218,-0.010796,0.99985,-100.78
+> view matrix models
+> #19.5,0.26754,-0.0049401,-0.96353,343.77,0.67554,0.71401,0.18391,-142.04,0.68707,-0.70011,0.19436,-4.4608,#19.6,0.9996,-0.025113,0.012944,3.7357,0.02497,0.99963,0.011123,-11.289,-0.013218,-0.010796,0.99985,-101.94
+> select subtract #19.5
+models selected
+> view matrix models
+> #19.6,0.9996,-0.025113,0.012944,45.164,0.02497,0.99963,0.011123,34.389,-0.013218,-0.010796,0.99985,-91.285
+> select add #19.5
+models selected
+> select subtract #19.6
+models selected
+> view matrix models
+> #19.5,0.26754,-0.0049401,-0.96353,344.03,0.67554,0.71401,0.18391,-143.07,0.68707,-0.70011,0.19436,-2.3189
+> view matrix models
+> #19.5,0.26754,-0.0049401,-0.96353,344.11,0.67554,0.71401,0.18391,-143.75,0.68707,-0.70011,0.19436,-2.6402
+> view matrix models
+> #19.5,0.26754,-0.0049401,-0.96353,344.79,0.67554,0.71401,0.18391,-143.93,0.68707,-0.70011,0.19436,-2.4896
+> view matrix models
+> #19.5,0.26754,-0.0049401,-0.96353,344.58,0.67554,0.71401,0.18391,-144.77,0.68707,-0.70011,0.19436,-2.613
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #19.5,0.72615,-0.23486,-0.64618,216.92,0.54621,0.76787,0.33472,-152.81,0.41757,-0.59601,0.68586,-51.868
+> view matrix models
+> #19.5,0.70227,-0.27297,-0.6575,229.43,0.57506,0.76195,0.29789,-151.25,0.41966,-0.5873,0.69207,-54.685
+> view matrix models
+> #19.5,0.42861,-0.19018,-0.88325,319.94,0.67356,0.71882,0.17208,-142.75,0.60217,-0.66868,0.43619,-34.434
+> view matrix models
+> #19.5,0.43409,-0.051251,-0.89941,302.83,0.12088,0.99267,0.0017759,-28.672,0.89272,-0.10949,0.4371,-173.75
+> ui mousemode right "translate selected models"
+> view matrix models
+> #19.5,0.43409,-0.051251,-0.89941,302.54,0.12088,0.99267,0.0017759,-27.682,0.89272,-0.10949,0.4371,-175.66
+> view matrix models
+> #19.5,0.43409,-0.051251,-0.89941,303.33,0.12088,0.99267,0.0017759,-28.225,0.89272,-0.10949,0.4371,-175.93
+> view matrix models
+> #19.5,0.43409,-0.051251,-0.89941,303.29,0.12088,0.99267,0.0017759,-28.758,0.89272,-0.10949,0.4371,-175.59
+> close #19.6
+> select subtract #19.5
+Nothing selected
+> vop add #19
+Opened volume sum as #14, grid size 44,28,210, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> color #14 #e93323ff models
+> vop add #19
+Opened volume sum as #15, grid size 44,28,210, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> color #15 #e93323ff models
+> select add #15
+models selected
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #15,0.984,-0.04231,-0.17305,61.428,0.033256,0.99794,-0.054892,33.241,0.17501,0.048259,0.98338,-63.162
+> view matrix models
+> #15,0.984,-0.04231,-0.17305,65.759,0.033256,0.99794,-0.054892,33.245,0.17501,0.048259,0.98338,-63.93
+> view matrix models
+> #15,0.984,-0.04231,-0.17305,63.751,0.033256,0.99794,-0.054892,29.077,0.17501,0.048259,0.98338,-65.911
+> view matrix models
+> #15,0.984,-0.04231,-0.17305,68.187,0.033256,0.99794,-0.054892,27.464,0.17501,0.048259,0.98338,-65.622
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 410 points
+correlation = 0.7345, correlation about mean = 0.4172, overlap = 64.37
+steps = 56, shift = 0.348, angle = 1.44 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.98410353 -0.03238350 -0.17461828 67.11358263
+.01866323 0.99664813 -0.07965032 33.84980842
+.17661234 0.07512522 0.98140933 -68.35372486
+Axis 0.39972976 -0.90710283 0.13183540
+Axis point 416.97262612 0.00000000 375.89115851
+Rotation angle (degrees) 11.16296426
+Shift along axis -12.88940170
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 410 points
+correlation = 0.7363, correlation about mean = 0.4193, overlap = 64.65
+steps = 40, shift = 0.0201, angle = 0.639 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.98380254 -0.04350736 -0.17389556 68.56712727
+.02969802 0.99625200 -0.08124017 31.82921033
+.17677835 0.07475993 0.98140734 -68.34325268
+Axis 0.39925645 -0.89749185 0.18735708
+Axis point 412.57977079 0.00000000 388.00329772
+Rotation angle (degrees) 11.26594629
+Shift along axis -13.99518120
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 410 points
+correlation = 0.7381, correlation about mean = 0.4216, overlap = 64.89
+steps = 44, shift = 0.0194, angle = 0.544 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.98341939 -0.05297878 -0.17343453 69.86380917
+.03908419 0.99581828 -0.08257349 30.11860948
+.17708392 0.07442583 0.98137764 -68.36074588
+Axis 0.39751433 -0.88749497 0.23309877
+Axis point 408.27848232 0.00000000 397.92829467
+Rotation angle (degrees) 11.38941901
+Shift along axis -14.89305502
+> view matrix models
+> #15,0.98433,-0.077042,-0.15863,70.271,0.065609,0.99494,-0.076099,25.008,0.16369,0.064499,0.9844,-65.801
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 410 points
+correlation = 0.7407, correlation about mean = 0.4242, overlap = 65.44
+steps = 72, shift = 0.389, angle = 1.2 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.98234201 -0.07388084 -0.17188887 72.65519532
+.05982787 0.99453568 -0.08555355 26.39117988
+.17727038 0.07375910 0.98139432 -68.30372921
+Axis 0.39199789 -0.85912631 0.32899793
+Axis point 398.43697491 -0.00000000 419.75978853
+Rotation angle (degrees) 11.72450032
+Shift along axis -16.66445890
+> view matrix models
+> #15,0.98273,-0.097912,-0.15701,72.668,0.08632,0.99313,-0.079039,21.615,0.16367,0.064122,0.98443,-65.675
+> view matrix models
+> #15,0.98273,-0.097912,-0.15701,73.772,0.08632,0.99313,-0.079039,22.594,0.16367,0.064122,0.98443,-65.888
+> view matrix models
+> #15,0.98273,-0.097912,-0.15701,73.325,0.08632,0.99313,-0.079039,22.193,0.16367,0.064122,0.98443,-66.063
+> hide #!6 models
+> show #!6 models
+> vop add #19
+Opened volume sum as #16, grid size 44,28,210, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> select subtract #15
+Nothing selected
+> color #16 #e93323ff models
+> select add #16
+models selected
+> select add #15
+models selected
+> select subtract #16
+models selected
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,0.98154,-0.092733,-0.16726,74.834,0.081856,0.99413,-0.07081,21.465,0.17285,0.055812,0.98337,-66.736
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 410 points
+correlation = 0.7422, correlation about mean = 0.4257, overlap = 65.73
+steps = 64, shift = 0.991, angle = 1.23 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.98153194 -0.08566160 -0.17104716 74.27259896
+.07151764 0.99361889 -0.08721653 24.31265921
+.17742680 0.07337292 0.98139500 -68.26895817
+Axis 0.38729620 -0.84042030 0.37907173
+Axis point 392.53959305 0.00000000 431.56944312
+Rotation angle (degrees) 11.96541625
+Shift along axis -17.54618908
+> view matrix models
+> #15,0.97576,-0.16799,-0.14025,80.533,0.15821,0.9843,-0.078255,7.0101,0.1512,0.054169,0.98702,-62.051
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 410 points
+correlation = 0.7512, correlation about mean = 0.4347, overlap = 67.49
+steps = 52, shift = 0.25, angle = 1.07 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.97390763 -0.15489569 -0.16586515 84.41675967
+.14022281 0.98537088 -0.09685959 12.47433179
+.17844183 0.07107421 0.98138013 -68.14290790
+Axis 0.34727619 -0.71200448 0.61028589
+Axis point 361.33136264 0.00000000 496.39437561
+Rotation angle (degrees) 13.99203990
+Shift along axis -21.15250479
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 410 points
+correlation = 0.7522, correlation about mean = 0.4356, overlap = 67.76
+steps = 40, shift = 0.0208, angle = 0.627 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.97227457 -0.16568259 -0.16501947 86.08811518
+.15092897 0.98364116 -0.09833878 10.68689053
+.17861297 0.07070607 0.98137559 -68.12374839
+Axis 0.34020397 -0.69156275 0.63718304
+Axis point 357.42759616 0.00000000 505.97798055
+Rotation angle (degrees) 14.38559239
+Shift along axis -21.51043372
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 410 points
+correlation = 0.7532, correlation about mean = 0.4364, overlap = 68.02
+steps = 40, shift = 0.0193, angle = 0.608 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.97058297 -0.17611601 -0.16417019 87.72184690
+.16128728 0.98185271 -0.09975803 8.97119328
+.17875993 0.07034489 0.98137479 -68.10082994
+Axis 0.33335764 -0.67205416 0.66122302
+Axis point 353.94604677 0.00000000 515.21173924
+Rotation angle (degrees) 14.78163058
+Shift along axis -21.81621634
+> select subtract #15
+Nothing selected
+> select add #16
+models selected
+> view matrix models
+> #16,0.95288,-0.27481,-0.12847,72.137,0.26596,0.96049,-0.081986,-34.913,0.14592,0.043956,0.98832,-35.502
+> view matrix models
+> #16,0.90838,-0.40462,-0.10552,94.74,0.39664,0.91366,-0.088879,-55.601,0.13237,0.03888,0.99044,-32.298
+> view matrix models
+> #16,0.91073,-0.391,-0.133,97.62,0.3856,0.92035,-0.065292,-58.577,0.14793,0.0081796,0.98896,-31.282
+> view matrix models
+> #16,0.90578,-0.39443,-0.15491,103.3,0.38458,0.91866,-0.090377,-53.376,0.17796,0.022285,0.98379,-38.674
+> ui mousemode right "translate selected models"
+> view matrix models
+> #16,0.90578,-0.39443,-0.15491,149.38,0.38458,0.91866,-0.090377,-2.7693,0.17796,0.022285,0.98379,-42.114
+> view matrix models
+> #16,0.90578,-0.39443,-0.15491,148.94,0.38458,0.91866,-0.090377,-7.6583,0.17796,0.022285,0.98379,-41.331
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #16,0.90533,-0.39468,-0.15684,149.44,0.38066,0.91786,-0.11241,-2.5299,0.18832,0.042066,0.98121,-45.723
+> view matrix models
+> #16,0.90452,-0.39521,-0.16016,150.31,0.37331,0.91541,-0.15055,6.6147,0.20611,0.07639,0.97554,-53.078
+> view matrix models
+> #16,0.86579,-0.46207,-0.19207,173.66,0.43709,0.8852,-0.15929,-1.4827,0.24362,0.053959,0.96837,-56.831
+> view matrix models
+> #16,0.41225,-0.91095,-0.014791,298.03,0.88712,0.40505,-0.22124,-22.902,0.20753,0.078084,0.97511,-53.529
+> ui mousemode right "translate selected models"
+> view matrix models
+> #16,0.41225,-0.91095,-0.014791,299.78,0.88712,0.40505,-0.22124,-7.364,0.20753,0.078084,0.97511,-94.81
+> view matrix models
+> #16,0.41225,-0.91095,-0.014791,291.56,0.88712,0.40505,-0.22124,-10.477,0.20753,0.078084,0.97511,-95.654
+> view matrix models
+> #16,0.41225,-0.91095,-0.014791,291.75,0.88712,0.40505,-0.22124,-16.737,0.20753,0.078084,0.97511,-96.001
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #16,0.40956,-0.91212,-0.017093,292.93,0.90273,0.4079,-0.13675,-36.501,0.13171,0.040578,0.99046,-77.513
+> view matrix models
+> #16,0.41247,-0.91096,0.004129,288.12,0.90081,0.40719,-0.15079,-33.331,0.13569,0.065917,0.98856,-81.396
+> ui mousemode right "translate selected models"
+> view matrix models
+> #16,0.41247,-0.91096,0.004129,284.44,0.90081,0.40719,-0.15079,-29.522,0.13569,0.065917,0.98856,-86.786
+> view matrix models
+> #16,0.41247,-0.91096,0.004129,284.95,0.90081,0.40719,-0.15079,-28.033,0.13569,0.065917,0.98856,-86.328
+> fitmap #16 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 410 points
+correlation = 0.6812, correlation about mean = 0.3109, overlap = 56.1
+steps = 72, shift = 1.83, angle = 1.51 degrees
+Position of volume sum (#16) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.42370495 -0.90527292 -0.03090379 289.88080487
+.88899787 0.42214416 -0.17741785 -23.88395361
+.17365743 0.04769942 0.98365027 -87.90646919
+Axis 0.12369957 -0.11240424 0.98593291
+Axis point 173.55247404 216.30678239 0.00000000
+Rotation angle (degrees) 65.49644551
+Shift along axis -48.12709233
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #16,0.41372,-0.90998,0.027802,280.21,0.90056,0.40458,-0.15906,-25.594,0.13349,0.090843,0.98688,-87.079
+> view matrix models
+> #16,0.40985,-0.91208,0.011668,284.38,0.90083,0.40272,-0.16224,-24.8,0.14328,0.077007,0.98668,-87.31
+> ui mousemode right "translate selected models"
+> view matrix models
+> #16,0.40985,-0.91208,0.011668,283.23,0.90083,0.40272,-0.16224,-25.096,0.14328,0.077007,0.98668,-87.987
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #16,0.4125,-0.91067,0.022656,280.39,0.90065,0.40398,-0.16007,-25.638,0.13662,0.086436,0.98685,-87.838
+> view matrix models
+> #16,0.41159,-0.91117,0.018847,281.37,0.90072,0.40354,-0.16082,-25.451,0.13893,0.08317,0.9868,-87.893
+> ui mousemode right "translate selected models"
+> view matrix models
+> #16,0.41159,-0.91117,0.018847,281.72,0.90072,0.40354,-0.16082,-25.352,0.13893,0.08317,0.9868,-88.701
+> vop add #19
+Opened volume sum as #17, grid size 44,28,210, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> select subtract #16
+Nothing selected
+> select add #17
+models selected
+> color #17 #e93323ff models
+> vop add #19
+Opened volume sum as #18, grid size 44,28,210, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> hide #!6 models
+> show #!6 models
+> hide #!6 models
+> show #!6 models
+> hide #!6 models
+> show #!6 models
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #17,0.984,-0.04231,-0.17305,17.172,0.033256,0.99794,-0.054892,16.15,0.17501,0.048259,0.98338,-57.11
+> view matrix models
+> #17,0.984,-0.04231,-0.17305,20.812,0.033256,0.99794,-0.054892,1.1656,0.17501,0.048259,0.98338,-54.521
+> view matrix models
+> #17,0.984,-0.04231,-0.17305,7.8789,0.033256,0.99794,-0.054892,4.5225,0.17501,0.048259,0.98338,-63.512
+> view matrix models
+> #17,0.984,-0.04231,-0.17305,7.8667,0.033256,0.99794,-0.054892,1.9779,0.17501,0.048259,0.98338,-63.922
+> view matrix models
+> #17,0.984,-0.04231,-0.17305,8.8773,0.033256,0.99794,-0.054892,0.95522,0.17501,0.048259,0.98338,-71.125
+> hide #!6 models
+> show #!6 models
+> fitmap #17 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 410 points
+correlation = 0.7311, correlation about mean = 0.3457, overlap = 71.64
+steps = 108, shift = 2.68, angle = 2.02 degrees
+Position of volume sum (#17) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.98293115 0.01404297 -0.18343704 4.72392037
+-0.02196789 0.99890766 -0.04124195 9.13909713
+.18265751 0.04456772 0.98216595 -70.15384490
+Axis 0.22716772 -0.96917822 -0.09533313
+Axis point 383.80535101 0.00000000 -8.60322452
+Rotation angle (degrees) 10.88676083
+Shift along axis -1.09630609
+> view matrix models
+> #17,0.98545,-0.01051,-0.16966,5.3851,0.0046286,0.99938,-0.035025,2.1113,0.16992,0.03373,0.98488,-67.604
+> view matrix models
+> #17,0.98545,-0.01051,-0.16966,4.6209,0.0046286,0.99938,-0.035025,1.9202,0.16992,0.03373,0.98488,-67.517
+> view matrix models
+> #17,0.98545,-0.01051,-0.16966,2.2703,0.0046286,0.99938,-0.035025,11.533,0.16992,0.03373,0.98488,-13.536
+> view matrix models
+> #17,0.98545,-0.01051,-0.16966,4.0173,0.0046286,0.99938,-0.035025,6.4982,0.16992,0.03373,0.98488,-14.254
+> view matrix models
+> #17,0.98545,-0.01051,-0.16966,5.0441,0.0046286,0.99938,-0.035025,5.8815,0.16992,0.03373,0.98488,-16.214
+> view matrix models
+> #17,0.98545,-0.01051,-0.16966,5.4229,0.0046286,0.99938,-0.035025,3.9144,0.16992,0.03373,0.98488,-16.403
+> fitmap #17 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 410 points
+correlation = 0.6987, correlation about mean = 0.2939, overlap = 63.34
+steps = 80, shift = 2.72, angle = 3.09 degrees
+Position of volume sum (#17) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.97842468 0.06027984 -0.19761449 0.19794883
+-0.07251710 0.99583411 -0.05527833 24.23229840
+.19345908 0.06841611 0.97871999 -22.76572688
+Axis 0.28690690 -0.90708771 -0.30802000
+Axis point 142.20306018 0.00000000 7.12574203
+Rotation angle (degrees) 12.44870402
+Shift along axis -14.91172803
+> view matrix models
+> #17,0.98235,0.036093,-0.18352,-0.026798,-0.045896,0.99772,-0.049448,17.414,0.18132,0.056998,0.98177,-20.443
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #17,0.95579,0.19623,-0.219,-8.9431,-0.19015,0.98055,0.048715,32.284,0.2243,-0.0049194,0.97451,-20.089
+> view matrix models
+> #17,0.95119,0.21266,-0.22364,-9.2637,-0.22807,0.9726,-0.045194,59.337,0.2079,0.093993,0.97362,-29.584
+> view matrix models
+> #17,0.95468,0.21993,-0.20055,-15.365,-0.23307,0.97146,-0.04415,60.374,0.18511,0.088892,0.97869,-24.938
+> ui mousemode right "translate selected models"
+> view matrix models
+> #17,0.95468,0.21993,-0.20055,-16.63,-0.23307,0.97146,-0.04415,60.222,0.18511,0.088892,0.97869,-25.646
+> fitmap #17 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 410 points
+correlation = 0.7364, correlation about mean = 0.3437, overlap = 71.01
+steps = 52, shift = 2.62, angle = 1.63 degrees
+Position of volume sum (#17) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.94438025 0.25561604 -0.20689700 -17.49243115
+-0.26592023 0.96371719 -0.02314308 64.29603770
+.19347445 0.07687397 0.97808897 -23.88743464
+Axis 0.15038870 -0.60201075 -0.78419787
+Axis point 177.81035027 93.82293085 0.00000000
+Rotation angle (degrees) 19.42231681
+Shift along axis -22.60509418
+> fitmap #17 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 410 points
+correlation = 0.7388, correlation about mean = 0.3489, overlap = 71.46
+steps = 40, shift = 0.016, angle = 0.664 degrees
+Position of volume sum (#17) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.94126489 0.26677140 -0.20701069 -18.31948281
+-0.27693099 0.96065577 -0.02120632 66.70633906
+.19320877 0.07728844 0.97810882 -23.88774613
+Axis 0.14436381 -0.58660186 -0.79690485
+Axis point 179.10156385 95.79895110 0.00000000
+Rotation angle (degrees) 19.94596737
+Shift along axis -22.73847216
+> view matrix models
+> #17,0.95035,0.2435,-0.19378,-19.069,-0.25117,0.96782,-0.015631,58.102,0.18373,0.063524,0.98092,-22.208
+> select subtract #17
+Nothing selected
+> select add #18
+models selected
+> ui mousemode right "rotate selected models"
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,0.984,-0.04231,-0.17305,-19.035,0.033256,0.99794,-0.054892,22.959,0.17501,0.048259,0.98338,-41.613
+> view matrix models
+> #18,0.984,-0.04231,-0.17305,-27.838,0.033256,0.99794,-0.054892,15.11,0.17501,0.048259,0.98338,-42.632
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,0.98449,-0.034244,-0.17204,-29.213,0.02604,0.99842,-0.04972,15.625,0.17347,0.044469,0.98383,-41.878
+> view matrix models
+> #18,0.94585,0.22941,-0.22966,-45.144,-0.23745,0.97137,-0.0075958,68.206,0.22135,0.061718,0.97324,-52.521
+> view matrix models
+> #18,0.9032,0.352,-0.2456,-49.275,-0.35658,0.93387,0.027143,92.378,0.23892,0.063061,0.96899,-55.693
+> view matrix models
+> #18,0.88066,0.40828,-0.24031,-52.921,-0.41099,0.91071,0.041152,104.58,0.23565,0.062521,0.96982,-55.073
+> view matrix models
+> #18,0.838,0.49139,-0.23725,-55.378,-0.49281,0.86823,0.057585,124.82,0.23428,0.068662,0.96974,-55.581
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,0.838,0.49139,-0.23725,-54.486,-0.49281,0.86823,0.057585,123.58,0.23428,0.068662,0.96974,-57.774
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 410 points
+correlation = 0.7255, correlation about mean = 0.3557, overlap = 78.4
+steps = 72, shift = 4.4, angle = 3.72 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.83041003 0.52526479 -0.18578505 -63.27903244
+-0.52596554 0.84905877 0.04959291 135.29508478
+.18379183 0.05653408 0.98133809 -49.06985473
+Axis 0.00622904 -0.33165983 -0.94337848
+Axis point 204.36655252 186.46583355 0.00000000
+Rotation angle (degrees) 33.85979591
+Shift along axis 1.02533180
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 410 points
+correlation = 0.7273, correlation about mean = 0.3586, overlap = 78.65
+steps = 44, shift = 0.0182, angle = 0.76 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.82328586 0.53643725 -0.18556794 -63.30515757
+-0.53698991 0.84200527 0.05166193 138.24933520
+.18396257 0.05711557 0.98127243 -49.18206951
+Axis 0.00480385 -0.32550132 -0.94552938
+Axis point 203.71015708 185.12767255 0.00000000
+Rotation angle (degrees) 34.58532492
+Shift along axis 1.19864242
+> view matrix models
+> #18,0.83884,0.51578,-0.17413,-66.849,-0.51418,0.85573,0.057781,129.81,0.17881,0.041067,0.98303,-47.621
+> color #18 #e93323ff models
+> select subtract #18
+Nothing selected
+> vop add #14-18
+Opened volume sum as #21, grid size 158,115,295, pixel 1.07,1.07,1.07, shown
+at step 1, values float32
+> vop add #14-18
+Opened volume sum as #22, grid size 158,115,295, pixel 1.07,1.07,1.07, shown
+at step 1, values float32
+> show #!15-18 target m
+> select add #22
+models selected
+> view matrix models
+> #22,0.984,-0.04231,-0.17305,160.94,0.033256,0.99794,-0.054892,4.3987,0.17501,0.048259,0.98338,-45.045
+> view matrix models
+> #22,0.984,-0.04231,-0.17305,143.05,0.033256,0.99794,-0.054892,120.35,0.17501,0.048259,0.98338,-44.996
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #22,0.13707,-0.99056,-0.0029883,431.28,0.97626,0.1356,-0.1689,89.208,0.16771,0.020234,0.98563,-39.512
+> ui mousemode right "translate selected models"
+> view matrix models
+> #22,0.13707,-0.99056,-0.0029883,358.24,0.97626,0.1356,-0.1689,24.24,0.16771,0.020234,0.98563,-43.096
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #22,-0.26082,-0.96537,0.0061361,431.7,0.93173,-0.25338,-0.26016,110.51,0.25271,-0.062137,0.96555,-43.452
+> view matrix models
+> #22,-0.22685,-0.96385,0.13978,401.31,0.95464,-0.24847,-0.16407,88.354,0.19287,0.09622,0.9765,-58.496
+> ui mousemode right "translate selected models"
+> view matrix models
+> #22,-0.22685,-0.96385,0.13978,381.59,0.95464,-0.24847,-0.16407,145.6,0.19287,0.09622,0.9765,-59.255
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #22,-0.82214,-0.55088,0.1436,433.94,0.54956,-0.83381,-0.0523,298.95,0.14855,0.035921,0.98825,-42.986
+> view matrix models
+> #22,-0.82057,-0.54935,0.15773,430.91,0.54776,-0.83467,-0.057344,300.32,0.16315,0.03934,0.98582,-46
+> view matrix models
+> #22,-0.82001,-0.54984,0.15895,430.66,0.55483,-0.83183,-0.015142,291.08,0.14054,0.075771,0.98717,-47.501
+> ui mousemode right "translate selected models"
+> view matrix models
+> #22,-0.82001,-0.54984,0.15895,427.29,0.55483,-0.83183,-0.015142,261.5,0.14054,0.075771,0.98717,-52.623
+> view matrix models
+> #22,-0.82001,-0.54984,0.15895,421.51,0.55483,-0.83183,-0.015142,270.17,0.14054,0.075771,0.98717,-57.988
+> view matrix models
+> #22,-0.82001,-0.54984,0.15895,421.75,0.55483,-0.83183,-0.015142,270.8,0.14054,0.075771,0.98717,-51.023
+> view matrix models
+> #22,-0.82001,-0.54984,0.15895,417.35,0.55483,-0.83183,-0.015142,270.8,0.14054,0.075771,0.98717,-54.383
+> view matrix models
+> #22,-0.82001,-0.54984,0.15895,416.28,0.55483,-0.83183,-0.015142,268.76,0.14054,0.075771,0.98717,-54.585
+> fitmap #22 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 2680 points
+correlation = 0.2927, correlation about mean = 0.1019, overlap = 50.23
+steps = 2000, shift = 3.57, angle = 1.88 degrees
+Position of volume sum (#22) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.81292087 -0.55946862 0.16172359 416.14809339
+.55900769 -0.82748582 -0.05270312 271.54892448
+.16330972 0.04756126 0.98542775 -51.17129626
+Axis 0.08928560 -0.00141245 0.99600506
+Axis point 168.48781561 200.11912315 0.00000000
+Rotation angle (degrees) 145.84170268
+Shift along axis -14.19438651
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #22,-0.91339,-0.36292,0.18441,398.72,0.36971,-0.92914,0.0026451,316.12,0.17039,0.070595,0.98285,-57.005
+> view matrix models
+> #22,-0.92523,-0.33196,0.1837,396.31,0.33939,-0.9406,0.0096125,322.74,0.1696,0.071239,0.98294,-56.966
+> ui mousemode right "translate selected models"
+> view matrix models
+> #22,-0.92523,-0.33196,0.1837,396.04,0.33939,-0.9406,0.0096125,317.11,0.1696,0.071239,0.98294,-57.061
+> view matrix models
+> #22,-0.92523,-0.33196,0.1837,395.17,0.33939,-0.9406,0.0096125,313.67,0.1696,0.071239,0.98294,-56.725
+> fitmap #22 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 2680 points
+correlation = 0.5693, correlation about mean = 0.2109, overlap = 197.3
+steps = 92, shift = 9.12, angle = 5.49 degrees
+Position of volume sum (#22) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.94871956 -0.26542670 0.17169701 391.90479191
+.27084459 -0.96258554 0.00850134 322.21233347
+.16301657 0.05456859 0.98511312 -53.62348591
+Axis 0.08557655 0.01612515 0.99620110
+Axis point 176.06596362 188.59593942 0.00000000
+Rotation angle (degrees) 164.38582181
+Shift along axis -14.68619195
+> view matrix models
+> #22,-0.95305,-0.24041,0.18412,384.41,0.24881,-0.96826,0.023614,326.42,0.1726,0.068317,0.98262,-58.563
+> select subtract #22
+Nothing selected
+> show #!19.5 models
+> select add #19.5
+models selected
+> select subtract #19.5
+Nothing selected
+> select add #19.5
+models selected
+> show #!19.4 models
+> show #!19.3 models
+> show #!19.2 models
+> show #!19.1 models
+> hide #!19.1 models
+> select subtract #19.5
+Nothing selected
+> close #19
+> show #!14 models
+> select add #14
+models selected
+> select subtract #14
+Nothing selected
+> select add #15
+models selected
+> select subtract #15
+Nothing selected
+> select add #16
+models selected
+> select subtract #16
+Nothing selected
+> select add #17
+models selected
+> select subtract #17
+Nothing selected
+> select add #18
+models selected
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,0.46134,0.87004,-0.17378,-32.626,-0.86499,0.48464,0.13005,241.49,0.19737,0.090318,0.97616,-56.906
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,0.46134,0.87004,-0.17378,-49.365,-0.86499,0.48464,0.13005,270.36,0.19737,0.090318,0.97616,-84.636
+> view matrix models
+> #18,0.46134,0.87004,-0.17378,-51.504,-0.86499,0.48464,0.13005,268.76,0.19737,0.090318,0.97616,-84.934
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,0.47194,0.87154,-0.13301,-61.72,-0.85746,0.48883,0.16065,260.78,0.20503,0.038234,0.97801,-79.987
+> view matrix models
+> #18,0.47481,0.87103,-0.12591,-63.619,-0.86038,0.48951,0.14188,264.87,0.18521,0.040962,0.98184,-76.795
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 410 points
+correlation = 0.746, correlation about mean = 0.4108, overlap = 74.27
+steps = 64, shift = 0.895, angle = 0.837 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.44895964 0.88531492 -0.12104843 -60.18722363
+-0.87624953 0.46273750 0.13439033 275.01098152
+.17499141 0.04573280 0.98350725 -75.29819371
+Axis -0.04957184 -0.16552728 -0.98495855
+Axis point 202.09934082 192.00431950 0.00000000
+Rotation angle (degrees) 63.41005291
+Shift along axis 31.62737154
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 410 points
+correlation = 0.7464, correlation about mean = 0.4112, overlap = 74.34
+steps = 60, shift = 0.0225, angle = 0.369 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.44328113 0.88826182 -0.12038594 -59.49448017
+-0.87914916 0.45702842 0.13498803 276.31626109
+.17492451 0.04599955 0.98350671 -75.32625995
+Axis -0.04960005 -0.16459899 -0.98511269
+Axis point 201.82976551 191.70683992 0.00000000
+Rotation angle (degrees) 63.77430909
+Shift along axis 31.67440591
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,0.46747,0.87701,-0.11104,-66.824,-0.86581,0.47958,0.14273,268.25,0.17843,0.029421,0.98351,-74.313
+> view matrix models
+> #18,0.46747,0.87701,-0.11104,-66.819,-0.86581,0.47958,0.14273,268.22,0.17843,0.029421,0.98351,-74.611
+> select subtract #18
+Nothing selected
+> vop add #18,21,22
+Opened volume sum as #19, grid size 292,251,337, pixel 1.07,1.07,1.07, shown
+at step 1, values float32
+> close #14-18
+> color #19 #e93323ff models
+> show #!21 models
+> hide #!21 models
+> show #!22 models
+> hide #!22 models
+> close #21-22
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/S152_glycan_all.mrc
+> models #19
+> rename #19 is #33
+Expected a keyword
+> rename #19 id #33
+> hide #!33 models
+> show #!20 models
+> color #20 #80e388ff models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/T171_glycan.mrc
+Opened T171_glycan.mrc as #14, grid size 10,12,11, pixel 1.07,1.07,1.07, shown
+at level 1.07, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/T171_glycan.mrc
+Opened T171_glycan.mrc as #15, grid size 10,12,11, pixel 1.07,1.07,1.07, shown
+at level 1.07, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/T171_glycan.mrc
+Opened T171_glycan.mrc as #16, grid size 10,12,11, pixel 1.07,1.07,1.07, shown
+at level 1.07, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/T171_glycan.mrc
+Opened T171_glycan.mrc as #17, grid size 10,12,11, pixel 1.07,1.07,1.07, shown
+at level 1.07, step 1, values float32
+> rename #20 id #18
+> rename #14-18 id #14
+> select add #14.1
+models selected
+> select subtract #14.1
+Nothing selected
+> color #14 #80e388ff models
+> select add #14
+models selected
+> select subtract #14
+Nothing selected
+> select add #14
+models selected
+> select subtract #14.1
+models selected
+> volume #14.1 level 0.055
+> volume #14.2 level 0.055
+> volume #14.3 level 0.055
+> volume #14.4 level 0.055
+> ui tool show "Volume Viewer"
+> hide #!6 models
+> show #!6 models
+> hide #!6 models
+> show #!6 models
+> color #5 #a9fab5ff
+> color #5 #fff6b6ff
+> select #5/B-z,1-9,0,AA-Al:171
+atoms, 594 bonds, 99 residues, 1 model selected
+> select #5/B-z,1-9,0,AA-Al:171
+atoms, 594 bonds, 99 residues, 1 model selected
+> color sel red
+> hide #!6 models
+> select add #5
+atoms, 217305 bonds, 28314 residues, 1 model selected
+> select subtract #5
+Nothing selected
+> show #!6 models
+> hide #!6 models
+> show #!6 models
+> hide #!6 models
+> show #!6 models
+> select add #14
+models selected
+> select subtract #14.1
+models selected
+> view matrix models #14,1,0,0,-2.5434,0,1,0,3.1423,0,0,1,104
+> fitmap #14.2 inMap #6
+Fit map T171_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 64 points
+correlation = 0.9405, correlation about mean = 0.6009, overlap = 40.12
+steps = 60, shift = 2.54, angle = 12.1 degrees
+Position of T171_glycan.mrc (#14.2) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.97878912 0.11240323 0.17128157 -37.18280660
+-0.11984746 0.99221929 0.03372653 18.28294926
+-0.16615791 -0.05353882 0.98464468 46.44357606
+Axis -0.20835359 0.80566606 -0.55451869
+Axis point 245.34146373 0.00000000 251.45396194
+Rotation angle (degrees) 12.08815782
+Shift along axis -3.27670824
+> select subtract #14.2
+models selected
+> view matrix models #14,1,0,0,-1.943,0,1,0,3.0475,0,0,1,103.7
+> fitmap #14.2 inMap #6
+Fit map T171_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 64 points
+correlation = 0.9405, correlation about mean = 0.6002, overlap = 40.14
+steps = 52, shift = 0.677, angle = 0.309 degrees
+Position of T171_glycan.mrc (#14.2) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.97805798 0.11735475 0.17213496 -38.43450920
+-0.12507336 0.99154176 0.03466389 19.47552925
+-0.16661103 -0.05543279 0.98446329 47.11485826
+Axis -0.21140043 0.79482446 -0.56882680
+Axis point 247.74172852 0.00000000 258.78527196
+Rotation angle (degrees) 12.30377963
+Shift along axis -3.19549544
+> select add #14.2
+models selected
+> select subtract #14.2
+models selected
+> select add #14.1
+models selected
+> select subtract #14.1
+models selected
+> select add #14.2
+models selected
+> select add #14.1
+models selected
+> select subtract #14
+Nothing selected
+> select add #14
+models selected
+> view matrix models #14,1,0,0,0.25349,0,1,0,-0.049845,0,0,1,-0.49267
+> fitmap #14.2 inMap #6
+Fit map T171_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 64 points
+correlation = 0.999, correlation about mean = 0.9887, overlap = 50.94
+steps = 76, shift = 3.71, angle = 10.8 degrees
+Position of T171_glycan.mrc (#14.2) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99956299 0.02854736 0.00767301 -5.22420727
+-0.02876317 0.99914598 0.02966474 1.90889646
+-0.00681961 -0.02987248 0.99953045 6.15142958
+Axis -0.70962104 0.17273673 -0.68308125
+Axis point 0.00000000 203.08507176 -59.46304156
+Rotation angle (degrees) 2.40426388
+Shift along axis -0.16498229
+> select subtract #14.1
+models selected
+> select add #14.1
+models selected
+> fitmap #14.1 inMap #6
+Fit map T171_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 64 points
+correlation = 0.9989, correlation about mean = 0.9877, overlap = 50.9
+steps = 52, shift = 1.28, angle = 2.58 degrees
+Position of T171_glycan.mrc (#14.1) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99966219 0.02545092 0.00526737 -4.44701476
+-0.02559974 0.99920893 0.03043298 1.09450761
+-0.00448865 -0.03055755 0.99952293 5.74194781
+Axis -0.76112240 0.12174885 -0.63707920
+Axis point 0.00000000 185.48018440 -31.70365198
+Rotation angle (degrees) 2.29623743
+Shift along axis -0.14009796
+> fitmap #14.1 inMap #6
+Fit map T171_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 64 points
+correlation = 0.9991, correlation about mean = 0.9904, overlap = 51.02
+steps = 40, shift = 0.0231, angle = 0.299 degrees
+Position of T171_glycan.mrc (#14.1) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99952839 0.02983351 0.00727645 -5.34718684
+-0.03002903 0.99914463 0.02843003 2.36986152
+-0.00642205 -0.02863512 0.99956930 5.89403481
+Axis -0.68071813 0.16340651 -0.71408763
+Axis point 74.65051396 184.55971732 0.00000000
+Rotation angle (degrees) 2.40227941
+Shift along axis -0.18167956
+> fitmap #14.1 inMap #6
+Fit map T171_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 64 points
+correlation = 0.9991, correlation about mean = 0.9905, overlap = 51.05
+steps = 44, shift = 0.00674, angle = 0.28 degrees
+Position of T171_glycan.mrc (#14.1) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99964614 0.02631614 0.00388104 -4.36193312
+-0.02641666 0.99924064 0.02864085 1.53630347
+-0.00312438 -0.02873324 0.99958223 5.18397982
+Axis -0.73330216 0.08953667 -0.67398155
+Axis point 0.00000000 177.43623603 -49.42901301
+Rotation angle (degrees) 2.24200387
+Shift along axis -0.15773627
+> select subtract #14.1
+models selected
+> view matrix models #14,1,0,0,-1.0544,0,1,0,1.5484,0,0,1,52.326
+> fitmap #14.2 inMap #6
+Fit map T171_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 64 points
+correlation = 0.9698, correlation about mean = 0.6965, overlap = 45.58
+steps = 64, shift = 1.55, angle = 6.46 degrees
+Position of T171_glycan.mrc (#14.2) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99015350 0.13998141 0.00111793 -17.15892448
+-0.13997962 0.99000227 0.01735560 27.86143609
+.00132271 -0.01734119 0.99984876 2.06037829
+Axis -0.12299335 -0.00072588 -0.99240723
+Axis point 189.33608928 135.85824782 0.00000000
+Rotation angle (degrees) 8.10869589
+Shift along axis 0.04547521
+> select subtract #14.2
+models selected
+> view matrix models #14,1,0,0,-2.4746,0,1,0,3.1448,0,0,1,104.47
+> fitmap #14.3 inMap #6
+Fit map T171_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 64 points
+correlation = 0.9406, correlation about mean = 0.6027, overlap = 40.16
+steps = 56, shift = 2.54, angle = 12.4 degrees
+Position of T171_glycan.mrc (#14.3) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.97795130 0.11603715 0.17362786 -37.92759339
+-0.12391232 0.99166904 0.03518891 19.01573563
+-0.16809815 -0.05592767 0.98418246 46.79428504
+Axis -0.21319747 0.79958138 -0.56144141
+Axis point 244.59455625 0.00000000 253.16355334
+Rotation angle (degrees) 12.33871730
+Shift along axis -2.98155414
+> select subtract #14.3
+models selected
+> view matrix models #14,1,0,0,-3.9686,0,1,0,4.6923,0,0,1,154.37
+> select subtract #14.4
+models selected
+> select subtract #14.5
+model selected
+> select add #14.1
+models selected
+> view matrix models #14,1,0,0,44.861,0,1,0,-2.9127,0,0,1,145.09
+> select add #14
+models selected
+> select subtract #14
+Nothing selected
+> hide #!14.1 models
+> show #!14.1 models
+> select add #14.1
+models selected
+> view matrix models
+> #14.1,0.99987,0.00080429,0.016055,-10.914,-0.0014413,0.99921,0.039708,-3.6888,-0.01601,-0.039726,0.99908,6.4825
+> view matrix models
+> #14.1,0.99987,0.00080429,0.016055,-44.861,-0.0014413,0.99921,0.039708,4.8793,-0.01601,-0.039726,0.99908,-31.474
+> view matrix models
+> #14.1,0.99987,0.00080429,0.016055,-51.137,-0.0014413,0.99921,0.039708,2.5458,-0.01601,-0.039726,0.99908,-32.648
+> fitmap #14.1 inMap #6
+Fit map T171_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 64 points
+correlation = 0.8276, correlation about mean = 0.3324, overlap = 29.94
+steps = 76, shift = 1.58, angle = 33.9 degrees
+Position of T171_glycan.mrc (#14.1) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.87933763 0.43181063 0.20076081 -111.59764718
+-0.34273453 0.86658289 -0.36272185 158.93716716
+-0.33060304 0.25014732 0.91001536 8.98654440
+Axis 0.54644795 0.47377597 -0.69060189
+Axis point 313.78621569 356.38937134 0.00000000
+Rotation angle (degrees) 34.10944136
+Shift along axis 8.11218098
+> view matrix models
+> #14.1,0.88334,0.41307,0.22154,-106.78,-0.32425,0.87981,-0.34757,144.59,-0.33849,0.23519,0.91111,15.153
+> view matrix models
+> #14.1,0.88334,0.41307,0.22154,-112.02,-0.32425,0.87981,-0.34757,144.51,-0.33849,0.23519,0.91111,15.312
+> fitmap #14.1 inMap #6
+Fit map T171_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 64 points
+correlation = 0.9407, correlation about mean = 0.6021, overlap = 40.14
+steps = 60, shift = 0.753, angle = 27.7 degrees
+Position of T171_glycan.mrc (#14.1) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.97848096 0.11552369 0.17096573 -84.19184344
+-0.12306961 0.99180921 0.03418115 26.65006133
+-0.16561665 -0.05448629 0.98468389 4.81586513
+Axis -0.21011693 0.79760565 -0.56539906
+Axis point 110.03674351 0.00000000 461.78003088
+Rotation angle (degrees) 12.18069667
+Shift along axis 36.22348581
+> select subtract #14.1
+Nothing selected
+> select add #14.2
+models selected
+> view matrix models
+> #14.2,0.9933,0.1148,0.01358,-60.444,-0.11515,0.99294,0.028361,30.148,-0.010228,-0.029734,0.99951,-87.259
+> view matrix models
+> #14.2,0.9933,0.1148,0.01358,-63.378,-0.11515,0.99294,0.028361,29.33,-0.010228,-0.029734,0.99951,-86.965
+> view matrix models
+> #14.2,0.9933,0.1148,0.01358,-61.425,-0.11515,0.99294,0.028361,28.65,-0.010228,-0.029734,0.99951,-86.987
+> view matrix models
+> #14.2,0.9933,0.1148,0.01358,-63.021,-0.11515,0.99294,0.028361,28.101,-0.010228,-0.029734,0.99951,-87.014
+> view matrix models
+> #14.2,0.9933,0.1148,0.01358,-60.354,-0.11515,0.99294,0.028361,26.175,-0.010228,-0.029734,0.99951,-86.657
+> fitmap #14.2 inMap #6
+Fit map T171_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 64 points
+correlation = 0.9703, correlation about mean = 0.7033, overlap = 45.63
+steps = 52, shift = 1.69, angle = 0.0955 degrees
+Position of T171_glycan.mrc (#14.2) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99011833 0.14023432 0.00015393 -61.61701155
+-0.14021876 0.98999095 0.01601917 34.71818912
+.00209405 -0.01588246 0.99987167 -91.60017991
+Axis -0.11301878 -0.00687332 -0.99356908
+Axis point 225.51524923 376.50866024 0.00000000
+Rotation angle (degrees) 8.11348063
+Shift along axis 97.73635659
+> fitmap #14.2 inMap #6
+Fit map T171_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 64 points
+correlation = 0.97, correlation about mean = 0.6994, overlap = 45.58
+steps = 40, shift = 0.012, angle = 0.115 degrees
+Position of T171_glycan.mrc (#14.2) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99019843 0.13966641 0.00059973 -61.61486572
+-0.13965469 0.99003855 0.01789540 34.30224643
+.00190563 -0.01780375 0.99983969 -91.29203833
+Axis -0.12677425 -0.00463747 -0.99192075
+Axis point 222.65939392 367.64182019 0.00000000
+Rotation angle (degrees) 8.09403109
+Shift along axis 98.20657029
+> select subtract #14.2
+Nothing selected
+> select add #14.3
+models selected
+> view matrix models
+> #14.3,0.97851,0.090329,0.18537,-69.917,-0.10126,0.99359,0.050329,30.487,-0.17964,-0.068018,0.98138,-96.312
+> view matrix models
+> #14.3,0.97851,0.090329,0.18537,-83.301,-0.10126,0.99359,0.050329,28.425,-0.17964,-0.068018,0.98138,-95.381
+> view matrix models
+> #14.3,0.97851,0.090329,0.18537,-76.419,-0.10126,0.99359,0.050329,21.512,-0.17964,-0.068018,0.98138,-95.091
+> view matrix models
+> #14.3,0.97851,0.090329,0.18537,-80.302,-0.10126,0.99359,0.050329,19.248,-0.17964,-0.068018,0.98138,-94.091
+> fitmap #14.3 inMap #6
+Fit map T171_glycan.mrc in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc
+zone using 64 points
+correlation = 0.9991, correlation about mean = 0.9903, overlap = 51.05
+steps = 60, shift = 0.666, angle = 11 degrees
+Position of T171_glycan.mrc (#14.3) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99961401 0.02722431 0.00553752 -47.33941077
+-0.02737089 0.99922218 0.02838781 7.32321389
+-0.00476038 -0.02852842 0.99958165 -140.58868043
+Axis -0.71559404 0.12947301 -0.68641234
+Axis point 0.00000000 -1772.52692233 292.42208160
+Rotation angle (degrees) 2.27916922
+Shift along axis 131.32576457
+> select subtract #14.3
+Nothing selected
+> select add #14.4
+models selected
+> view matrix models #14.4,1,0,0,-47.355,0,1,0,-12.704,0,0,1,-205.95
+> hide #!6 models
+> show #!6 models
+> view matrix models #14.4,1,0,0,-51.669,0,1,0,-10.601,0,0,1,-195.49
+> view matrix models #14.4,1,0,0,-55.365,0,1,0,-4.5223,0,0,1,-194.26
+> view matrix models #14.4,1,0,0,-42.934,0,1,0,-1.5721,0,0,1,-194.91
+> view matrix models #14.4,1,0,0,-45.556,0,1,0,2.4417,0,0,1,-197.25
+> view matrix models #14.4,1,0,0,-44.685,0,1,0,2.8744,0,0,1,-197.09
+> view matrix models #14.4,1,0,0,-44.705,0,1,0,3.1779,0,0,1,-197.5
+> select subtract #14.4
+Nothing selected
+> select add #14.5
+models selected
+> view matrix models
+> #14.5,0.9996,-0.025113,0.012944,-39.489,0.02497,0.99963,0.011123,7.1774,-0.013218,-0.010796,0.99985,-245.97
+> view matrix models
+> #14.5,0.9996,-0.025113,0.012944,-46.327,0.02497,0.99963,0.011123,5.9319,-0.013218,-0.010796,0.99985,-248.27
+> view matrix models
+> #14.5,0.9996,-0.025113,0.012944,-35.466,0.02497,0.99963,0.011123,-5.4782,-0.013218,-0.010796,0.99985,-246.26
+> view matrix models
+> #14.5,0.9996,-0.025113,0.012944,-44.023,0.02497,0.99963,0.011123,-4.8792,-0.013218,-0.010796,0.99985,-246.87
+> view matrix models
+> #14.5,0.9996,-0.025113,0.012944,-41.667,0.02497,0.99963,0.011123,-8.0395,-0.013218,-0.010796,0.99985,-246.64
+> view matrix models
+> #14.5,0.9996,-0.025113,0.012944,-42.653,0.02497,0.99963,0.011123,-8.374,-0.013218,-0.010796,0.99985,-246.42
+> view matrix models
+> #14.5,0.9996,-0.025113,0.012944,-42.912,0.02497,0.99963,0.011123,-8.1195,-0.013218,-0.010796,0.99985,-246.32
+> select subtract #14.5
+Nothing selected
+> vop add #14
+Opened volume sum as #15, grid size 51,24,207, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> show #!14.1 models
+> show #!14.2 models
+> show #!14.3 models
+> show #!14.4 models
+> show #!14.5 models
+> select add #15
+models selected
+> view matrix models
+> #15,0.97905,0.089831,0.18274,-79.42,-0.10037,0.99373,0.049261,-9.7925,-0.17717,-0.066571,0.98193,178.13
+> view matrix models
+> #15,0.97905,0.089831,0.18274,-83.031,-0.10037,0.99373,0.049261,-7.1544,-0.17717,-0.066571,0.98193,178.31
+> view matrix models
+> #15,0.97905,0.089831,0.18274,-73.603,-0.10037,0.99373,0.049261,-7.0216,-0.17717,-0.066571,0.98193,179.23
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,0.97042,0.15248,0.1872,-80.635,-0.16519,0.98477,0.054185,9.4554,-0.17609,-0.083505,0.98083,181.42
+> view matrix models
+> #15,0.959,0.25183,0.12998,-88.999,-0.25409,0.96718,0.00087943,35.919,-0.12549,-0.03387,0.99152,161.78
+> view matrix models
+> #15,0.92585,0.3574,0.12273,-95.645,-0.35913,0.93325,-0.0084676,66.264,-0.11757,-0.036237,0.9924,160.17
+> view matrix models
+> #15,0.80365,0.58996,0.078011,-97.065,-0.58734,0.80743,-0.055628,140.96,-0.095807,-0.001113,0.9954,149.86
+> view matrix models
+> #15,0.79339,0.59373,0.13427,-98.063,-0.58702,0.80463,-0.08934,143.02,-0.16108,-0.0079368,0.98691,166.84
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,0.79339,0.59373,0.13427,-103.87,-0.58702,0.80463,-0.08934,157.33,-0.16108,-0.0079368,0.98691,165.37
+> view matrix models
+> #15,0.79339,0.59373,0.13427,-99.576,-0.58702,0.80463,-0.08934,157.61,-0.16108,-0.0079368,0.98691,166.63
+> hide #!6 models
+> show #!6 models
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #15,0.79339,0.59373,0.13427,-98.802,-0.58702,0.80463,-0.08934,158.1,-0.16108,-0.0079368,0.98691,167.04
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.8158, correlation about mean = 0.4796, overlap = 139.2
+steps = 64, shift = 2.83, angle = 2.01 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.77774438 0.61212252 0.14289751 -97.44872720
+-0.60772422 0.79032511 -0.07782990 166.54970448
+-0.16057693 -0.02631051 0.98667259 168.18159640
+Axis 0.04095065 0.24121941 -0.96960623
+Axis point 242.09360972 238.61129875 0.00000000
+Rotation angle (degrees) 38.97950317
+Shift along axis -126.88549072
+> view matrix models
+> #15,0.79065,0.59166,0.15753,-98.283,-0.58981,0.80505,-0.063388,159.86,-0.16432,-0.042793,0.98548,171.53
+> view matrix models
+> #15,0.79065,0.59166,0.15753,-98.101,-0.58981,0.80505,-0.063388,159.55,-0.16432,-0.042793,0.98548,172.59
+> view matrix models
+> #15,0.79065,0.59166,0.15753,-98.555,-0.58981,0.80505,-0.063388,159.54,-0.16432,-0.042793,0.98548,172.44
+> select subtract #15
+Nothing selected
+> vop add #14
+Opened volume sum as #16, grid size 51,24,207, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> hide #!14 models
+> show #!14 models
+> show #!14.1 models
+> show #!14.2 models
+> show #!14.3 models
+> show #!14.4 models
+> show #!14.5 models
+> select add #16
+models selected
+> view matrix models
+> #16,0.97905,0.089831,0.18274,-47.138,-0.10037,0.99373,0.049261,-1.2866,-0.17717,-0.066571,0.98193,152.18
+> view matrix models
+> #16,0.97905,0.089831,0.18274,-33.843,-0.10037,0.99373,0.049261,4.012,-0.17717,-0.066571,0.98193,154.68
+> view matrix models
+> #16,0.97905,0.089831,0.18274,-39.816,-0.10037,0.99373,0.049261,4.8435,-0.17717,-0.066571,0.98193,154.24
+> view matrix models
+> #16,0.97905,0.089831,0.18274,-34.656,-0.10037,0.99373,0.049261,7.4053,-0.17717,-0.066571,0.98193,153.73
+> view matrix models
+> #16,0.97905,0.089831,0.18274,-39.907,-0.10037,0.99373,0.049261,13.728,-0.17717,-0.066571,0.98193,155.01
+> view matrix models
+> #16,0.97905,0.089831,0.18274,-37.961,-0.10037,0.99373,0.049261,14.956,-0.17717,-0.066571,0.98193,154.47
+> fitmap #15 inMap #14.1
+Fit map volume sum in map T171_glycan.mrc using 574 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of volume sum (#15) relative to T171_glycan.mrc (#14.1) coordinates:
+Matrix rotation and translation
+.86239467 0.50604269 -0.01400842 -58.19460885
+-0.50414934 0.85599994 -0.11444450 127.77366943
+-0.04592259 0.10575866 0.99333087 164.02969079
+Axis 0.21287883 0.03085265 -0.97659138
+Axis point 233.07675322 107.43783364 0.00000000
+Rotation angle (degrees) 31.14482216
+Shift along axis -168.63622504
+> fitmap #15 inMap #14.1
+Fit map volume sum in map T171_glycan.mrc using 574 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of volume sum (#15) relative to T171_glycan.mrc (#14.1) coordinates:
+Matrix rotation and translation
+.86239467 0.50604269 -0.01400842 -58.19460885
+-0.50414934 0.85599994 -0.11444450 127.77366943
+-0.04592259 0.10575866 0.99333087 164.02969079
+Axis 0.21287883 0.03085265 -0.97659138
+Axis point 233.07675322 107.43783364 0.00000000
+Rotation angle (degrees) 31.14482216
+Shift along axis -168.63622504
+> fitmap #15 inMap #14.1
+Fit map volume sum in map T171_glycan.mrc using 574 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of volume sum (#15) relative to T171_glycan.mrc (#14.1) coordinates:
+Matrix rotation and translation
+.86239467 0.50604269 -0.01400842 -58.19460885
+-0.50414934 0.85599994 -0.11444450 127.77366943
+-0.04592259 0.10575866 0.99333087 164.02969079
+Axis 0.21287883 0.03085265 -0.97659138
+Axis point 233.07675322 107.43783364 0.00000000
+Rotation angle (degrees) 31.14482216
+Shift along axis -168.63622504
+> fitmap #15 inMap #14.1
+Fit map volume sum in map T171_glycan.mrc using 574 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of volume sum (#15) relative to T171_glycan.mrc (#14.1) coordinates:
+Matrix rotation and translation
+.86239467 0.50604269 -0.01400842 -58.19460885
+-0.50414934 0.85599994 -0.11444450 127.77366943
+-0.04592259 0.10575866 0.99333087 164.02969079
+Axis 0.21287883 0.03085265 -0.97659138
+Axis point 233.07675322 107.43783364 0.00000000
+Rotation angle (degrees) 31.14482216
+Shift along axis -168.63622504
+> fitmap #15 inMap #14.1
+Fit map volume sum in map T171_glycan.mrc using 574 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of volume sum (#15) relative to T171_glycan.mrc (#14.1) coordinates:
+Matrix rotation and translation
+.86239467 0.50604269 -0.01400842 -58.19460885
+-0.50414934 0.85599994 -0.11444450 127.77366943
+-0.04592259 0.10575866 0.99333087 164.02969079
+Axis 0.21287883 0.03085265 -0.97659138
+Axis point 233.07675322 107.43783364 0.00000000
+Rotation angle (degrees) 31.14482216
+Shift along axis -168.63622504
+> fitmap #15 inMap #14.1
+Fit map volume sum in map T171_glycan.mrc using 574 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of volume sum (#15) relative to T171_glycan.mrc (#14.1) coordinates:
+Matrix rotation and translation
+.86239467 0.50604269 -0.01400842 -58.19460885
+-0.50414934 0.85599994 -0.11444450 127.77366943
+-0.04592259 0.10575866 0.99333087 164.02969079
+Axis 0.21287883 0.03085265 -0.97659138
+Axis point 233.07675322 107.43783364 0.00000000
+Rotation angle (degrees) 31.14482216
+Shift along axis -168.63622504
+> fitmap #15 inMap #14.1
+Fit map volume sum in map T171_glycan.mrc using 574 points
+correlation = 0, correlation about mean = 0, overlap = 0
+steps = 24, shift = 0, angle = 0 degrees
+Position of volume sum (#15) relative to T171_glycan.mrc (#14.1) coordinates:
+Matrix rotation and translation
+.86239467 0.50604269 -0.01400842 -58.19460885
+-0.50414934 0.85599994 -0.11444450 127.77366943
+-0.04592259 0.10575866 0.99333087 164.02969079
+Axis 0.21287883 0.03085265 -0.97659138
+Axis point 233.07675322 107.43783364 0.00000000
+Rotation angle (degrees) 31.14482216
+Shift along axis -168.63622504
+> select subtract #16
+Nothing selected
+> fitmap #16 inMap #14.1
+Fit map volume sum in map T171_glycan.mrc using 574 points
+correlation = 0.3694, correlation about mean = 0.3303, overlap = 22.84
+steps = 2000, shift = 220, angle = 144 degrees
+Position of volume sum (#16) relative to T171_glycan.mrc (#14.1) coordinates:
+Matrix rotation and translation
+-0.55008826 -0.71020119 -0.43933720 520.76285474
+-0.53544455 0.70366458 -0.46707098 221.02995045
+.64086039 -0.02168955 -0.76735098 286.19303069
+Axis 0.37699118 -0.91432857 0.14792200
+Axis point 255.75104212 0.00000000 251.61116281
+Rotation angle (degrees) 143.79292062
+Shift along axis 36.56324894
+> hide #!14 models
+> show #!14 models
+> select add #16
+models selected
+> view matrix models
+> #16,-0.46955,-0.63607,-0.61232,499.73,-0.4453,0.76947,-0.45785,199.87,0.76238,0.057685,-0.64455,177.66
+> view matrix models
+> #16,-0.46955,-0.63607,-0.61232,507.07,-0.4453,0.76947,-0.45785,181.68,0.76238,0.057685,-0.64455,-18.465
+> close #16
+> vop add #14
+Opened volume sum as #16, grid size 51,24,207, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> show #!14.1 models
+> select add #16
+models selected
+> view matrix models
+> #16,0.97905,0.089831,0.18274,-11.694,-0.10037,0.99373,0.049261,40.091,-0.17717,-0.066571,0.98193,150.79
+> view matrix models
+> #16,0.97905,0.089831,0.18274,-43.122,-0.10037,0.99373,0.049261,29.877,-0.17717,-0.066571,0.98193,153.05
+> view matrix models
+> #16,0.97905,0.089831,0.18274,-33.666,-0.10037,0.99373,0.049261,16.339,-0.17717,-0.066571,0.98193,154.33
+> view matrix models
+> #16,0.97905,0.089831,0.18274,-36.805,-0.10037,0.99373,0.049261,13.865,-0.17717,-0.066571,0.98193,155.71
+> view matrix models
+> #16,0.97905,0.089831,0.18274,-38.699,-0.10037,0.99373,0.049261,14.758,-0.17717,-0.066571,0.98193,155.05
+> fitmap #16 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.828, correlation about mean = 0.543, overlap = 151
+steps = 72, shift = 1.79, angle = 0.523 degrees
+Position of volume sum (#16) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.97839024 0.11488979 0.17190946 -41.32496560
+-0.12098195 0.99233082 0.02535564 21.55855372
+-0.16767795 -0.04560565 0.98478639 149.66608575
+Axis -0.16915185 0.80948137 -0.56225222
+Axis point 657.72474925 0.00000000 381.81763614
+Rotation angle (degrees) 12.10806332
+Shift along axis -59.70864745
+> fitmap #16 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.8269, correlation about mean = 0.5392, overlap = 151.1
+steps = 60, shift = 0.0733, angle = 0.0552 degrees
+Position of volume sum (#16) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.97832690 0.11485034 0.17229589 -41.35081268
+-0.12081300 0.99237304 0.02449406 21.61264103
+-0.16816865 -0.04477878 0.98474066 149.66749415
+Axis -0.16500454 0.81097003 -0.56133867
+Axis point 656.37579991 0.00000000 379.70331554
+Rotation angle (degrees) 12.11719008
+Shift along axis -59.66387658
+> select subtract #16
+Nothing selected
+> hide #!14.1 models
+> vop add #14
+Opened volume sum as #17, grid size 51,24,207, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> select add #17
+models selected
+> view matrix models
+> #17,0.97905,0.089831,0.18274,34.485,-0.10037,0.99373,0.049261,73.029,-0.17717,-0.066571,0.98193,116.4
+> view matrix models
+> #17,0.97905,0.089831,0.18274,-9.1018,-0.10037,0.99373,0.049261,48.615,-0.17717,-0.066571,0.98193,155.72
+> view matrix models
+> #17,0.97905,0.089831,0.18274,-18.214,-0.10037,0.99373,0.049261,44.083,-0.17717,-0.066571,0.98193,184.12
+> view matrix models
+> #17,0.97905,0.089831,0.18274,-12.596,-0.10037,0.99373,0.049261,43.522,-0.17717,-0.066571,0.98193,181.14
+> view matrix models
+> #17,0.97905,0.089831,0.18274,-14.609,-0.10037,0.99373,0.049261,35.883,-0.17717,-0.066571,0.98193,182.42
+> view matrix models
+> #17,0.97905,0.089831,0.18274,-12.796,-0.10037,0.99373,0.049261,37.632,-0.17717,-0.066571,0.98193,183.35
+> fitmap #17 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.7699, correlation about mean = 0.468, overlap = 119.1
+steps = 96, shift = 2.32, angle = 2 degrees
+Position of volume sum (#17) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.97960061 0.09688046 0.17605911 -14.02817606
+-0.09997145 0.99495182 0.00875106 39.19080495
+-0.17432253 -0.02617343 0.98434070 177.04029437
+Axis -0.08657372 0.86855489 -0.48797274
+Axis point 854.13865955 0.00000000 203.79064154
+Rotation angle (degrees) 11.63661038
+Shift along axis -51.13700161
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #17,0.94511,-0.26291,0.19403,44.216,0.25324,0.96461,0.073488,-42.075,-0.20648,-0.020318,0.97824,183.24
+> fitmap #17 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.8141, correlation about mean = 0.5192, overlap = 135.9
+steps = 116, shift = 1.25, angle = 2.24 degrees
+Position of volume sum (#17) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.95728223 -0.24829849 0.14818428 42.40677210
+.23957994 0.96802734 0.07432712 -41.21554880
+-0.16190175 -0.03565005 0.98616271 175.52426549
+Axis -0.18689291 0.52695369 0.82909037
+Axis point 450.99029477 180.42341310 0.00000000
+Rotation angle (degrees) 17.11107818
+Shift along axis 115.88126776
+> ui mousemode right "translate selected models"
+> view matrix models
+> #17,0.94879,-0.273,0.15898,47.334,0.26165,0.96106,0.088839,-43.694,-0.17704,-0.042692,0.98328,179.65
+> fitmap #17 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.8149, correlation about mean = 0.5211, overlap = 136.2
+steps = 76, shift = 0.568, angle = 0.428 degrees
+Position of volume sum (#17) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.95555471 -0.25548136 0.14712057 43.91878454
+.24668234 0.96614741 0.07554470 -42.69720011
+-0.16144042 -0.03589505 0.98622945 175.45490601
+Axis -0.18578528 0.51441332 0.83717547
+Axis point 441.28306950 180.04715686 0.00000000
+Rotation angle (degrees) 17.45252449
+Shift along axis 116.76307117
+> vop add #14
+Opened volume sum as #18, grid size 51,24,207, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> select subtract #17
+Nothing selected
+> select add #18
+models selected
+> view matrix models
+> #18,0.97905,0.089831,0.18274,22.9,-0.10037,0.99373,0.049261,141.38,-0.17717,-0.066571,0.98193,106.74
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,0.87366,-0.46229,0.1517,127.75,0.43891,0.88338,0.1643,22.348,-0.20996,-0.076956,0.97468,116.4
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,0.87366,-0.46229,0.1517,98.549,0.43891,0.88338,0.1643,-55.618,-0.20996,-0.076956,0.97468,224.5
+> view matrix models
+> #18,0.87366,-0.46229,0.1517,101.82,0.43891,0.88338,0.1643,-45.013,-0.20996,-0.076956,0.97468,222.63
+> view matrix models
+> #18,0.87366,-0.46229,0.1517,101.62,0.43891,0.88338,0.1643,-49.601,-0.20996,-0.076956,0.97468,222
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.7141, correlation about mean = 0.3746, overlap = 100.8
+steps = 68, shift = 3.95, angle = 3.2 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.88512449 -0.44500947 0.13609262 97.63428474
+.43514448 0.89513262 0.09688587 -46.46497654
+-0.16493608 -0.02653610 0.98594722 203.56449603
+Axis -0.13152925 0.32080250 0.93796898
+Axis point 274.50922259 196.76900130 0.00000000
+Rotation angle (degrees) 27.98112943
+Shift along axis 163.18933914
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,0.79609,-0.57464,0.18984,134.04,0.55829,0.8184,0.1361,-64.39,-0.23357,-0.0023636,0.97234,215.78
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.6838, correlation about mean = 0.2871, overlap = 100.7
+steps = 80, shift = 5.65, angle = 1.77 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.81029159 -0.56588103 0.15233578 126.17059026
+.55169235 0.82426406 0.12737468 -66.74117560
+-0.19764382 -0.01916815 0.98008647 212.44214464
+Axis -0.12416517 0.29653636 0.94691562
+Axis point 264.41203802 170.67989895 0.00000000
+Rotation angle (degrees) 36.16498795
+Shift along axis 165.70760770
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,0.79354,-0.58663,0.16172,132.15,0.56958,0.80959,0.1419,-65.659,-0.21417,-0.020497,0.97658,213.94
+> view matrix models
+> #18,0.79354,-0.58663,0.16172,136.67,0.56958,0.80959,0.1419,-62.137,-0.21417,-0.020497,0.97658,213.19
+> view matrix models
+> #18,0.79354,-0.58663,0.16172,135.79,0.56958,0.80959,0.1419,-67.464,-0.21417,-0.020497,0.97658,213.71
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.6843, correlation about mean = 0.2848, overlap = 101
+steps = 76, shift = 3.91, angle = 0.673 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.80382148 -0.57550471 0.15055015 129.18406682
+.56122405 0.81757627 0.12882782 -68.12307707
+-0.19722725 -0.01906220 0.98017245 212.34191392
+Axis -0.12345737 0.29032171 0.94893181
+Axis point 262.56646830 170.52840301 0.00000000
+Rotation angle (degrees) 36.79486016
+Shift along axis 165.77166381
+> view matrix models
+> #18,0.78684,-0.59608,0.1599,141.12,0.57895,0.80267,0.14331,-66.654,-0.21377,-0.020193,0.97668,214.15
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,0.78667,-0.60925,0.099777,146.14,0.59359,0.79085,0.14903,-68.771,-0.1697,-0.058008,0.98379,208.61
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,0.78667,-0.60925,0.099777,146.05,0.59359,0.79085,0.14903,-69.76,-0.1697,-0.058008,0.98379,207.41
+> fitmap #18 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.7419, correlation about mean = 0.417, overlap = 107.1
+steps = 60, shift = 0.828, angle = 1.62 degrees
+Position of volume sum (#18) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.79580485 -0.59526943 0.11112575 141.80661550
+.58377282 0.80292755 0.12048501 -69.87393971
+-0.16094697 -0.03101037 0.98647576 203.31152557
+Axis -0.12423018 0.22310675 0.96684551
+Axis point 245.61558495 188.06265085 0.00000000
+Rotation angle (degrees) 37.57046225
+Shift along axis 163.36482635
+> vop add #14
+Opened volume sum as #19, grid size 51,24,207, pixel 1.07,1.07,1.07, shown at
+step 1, values float32
+> select subtract #18
+Nothing selected
+> select add #19
+models selected
+> view matrix models
+> #19,0.97905,0.089831,0.18274,57.284,-0.10037,0.99373,0.049261,-31.99,-0.17717,-0.066571,0.98193,96.324
+> view matrix models
+> #19,0.97905,0.089831,0.18274,94.815,-0.10037,0.99373,0.049261,95.985,-0.17717,-0.066571,0.98193,164.86
+> view matrix models
+> #19,0.97905,0.089831,0.18274,60.711,-0.10037,0.99373,0.049261,130.07,-0.17717,-0.066571,0.98193,191.26
+> view matrix models
+> #19,0.97905,0.089831,0.18274,13.503,-0.10037,0.99373,0.049261,82.88,-0.17717,-0.066571,0.98193,192.08
+> view matrix models
+> #19,0.97905,0.089831,0.18274,-3.0969,-0.10037,0.99373,0.049261,118.85,-0.17717,-0.066571,0.98193,196.24
+> view matrix models
+> #19,0.97905,0.089831,0.18274,-12.769,-0.10037,0.99373,0.049261,100.62,-0.17717,-0.066571,0.98193,196.95
+> view matrix models
+> #19,0.97905,0.089831,0.18274,-12.436,-0.10037,0.99373,0.049261,98.933,-0.17717,-0.066571,0.98193,183.86
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #19,0.68909,-0.71873,0.092685,175.78,0.69262,0.69081,0.2075,-55.632,-0.21316,-0.078788,0.97383,194.59
+> fitmap #19 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.7563, correlation about mean = 0.4863, overlap = 108.3
+steps = 112, shift = 5.14, angle = 1.94 degrees
+Position of volume sum (#19) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.72075192 -0.68704262 0.09213637 162.38993600
+.66926570 0.72431939 0.16566488 -52.41306627
+-0.18055499 -0.05773957 0.98186865 181.67936737
+Axis -0.15941842 0.19458890 0.96784344
+Axis point 196.72772693 188.82796061 0.00000000
+Rotation angle (degrees) 44.48205189
+Shift along axis 139.75023638
+> view matrix models
+> #19,0.59619,-0.80252,0.022565,210.54,0.77499,0.58262,0.24484,-59.679,-0.20964,-0.12849,0.9693,197.67
+> ui mousemode right "translate selected models"
+> view matrix models
+> #19,0.59619,-0.80252,0.022565,215.9,0.77499,0.58262,0.24484,-53.325,-0.20964,-0.12849,0.9693,199.19
+> view matrix models
+> #19,0.59619,-0.80252,0.022565,219.97,0.77499,0.58262,0.24484,-62.143,-0.20964,-0.12849,0.9693,199.76
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #19,0.59553,-0.79943,0.079083,216.76,0.78971,0.60064,0.12483,-61.985,-0.14729,-0.011886,0.98902,167.37
+> ui mousemode right "translate selected models"
+> view matrix models
+> #19,0.59553,-0.79943,0.079083,214.24,0.78971,0.60064,0.12483,-55.866,-0.14729,-0.011886,0.98902,170.09
+> fitmap #19 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.5177, correlation about mean = 0.2023, overlap = 53.84
+steps = 108, shift = 3.8, angle = 1.44 degrees
+Position of volume sum (#19) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.60194906 -0.79383657 0.08649181 209.53905404
+.78596476 0.60813056 0.11151956 -57.38459665
+-0.14112662 0.00085042 0.98999119 168.74352675
+Axis -0.06917051 0.14226624 0.98740861
+Axis point 189.54267173 181.45960613 0.00000000
+Rotation angle (degrees) 53.12756647
+Shift along axis 143.96099718
+> fitmap #19 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.5174, correlation about mean = 0.2017, overlap = 53.88
+steps = 48, shift = 0.0207, angle = 0.413 degrees
+Position of volume sum (#19) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.59636430 -0.79818695 0.08513058 211.57729191
+.79026818 0.60240970 0.11215509 -57.61845519
+-0.14080422 0.00039070 0.99003738 168.71824130
+Axis -0.06949093 0.14047783 0.98764214
+Axis point 189.84001515 181.59456607 0.00000000
+Rotation angle (degrees) 53.52972302
+Shift along axis 143.83642663
+> ui mousemode right "translate selected models"
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #19,0.57741,-0.81216,0.083647,216.61,0.79959,0.58322,0.14322,-56.576,-0.1651,-0.015812,0.98615,175.31
+> view matrix models
+> #19,0.35306,-0.93303,0.069345,287.98,0.91156,0.35973,0.19911,-54.58,-0.21072,-0.0070835,0.97752,185.41
+> ui mousemode right "translate selected models"
+> view matrix models
+> #19,0.35306,-0.93303,0.069345,287.42,0.91156,0.35973,0.19911,-53.794,-0.21072,-0.0070835,0.97752,186.2
+> fitmap #19 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.6679, correlation about mean = 0.3868, overlap = 92.82
+steps = 128, shift = 1.88, angle = 3.44 degrees
+Position of volume sum (#19) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.38024556 -0.92488042 0.00308610 285.47622685
+.91070005 0.37499359 0.17322017 -55.52888975
+-0.16136521 -0.06305569 0.98487829 184.13872375
+Axis -0.12716562 0.08850906 0.98792462
+Axis point 205.33028401 190.41788284 0.00000000
+Rotation angle (degrees) 68.28076115
+Shift along axis 140.69760586
+> fitmap #19 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.6688, correlation about mean = 0.3879, overlap = 92.96
+steps = 56, shift = 0.0135, angle = 0.313 degrees
+Position of volume sum (#19) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.37530082 -0.92690101 0.00195100 287.00994481
+.91276772 0.36994283 0.17319753 -55.29286255
+-0.16125873 -0.06322036 0.98488518 184.14252173
+Axis -0.12697229 0.08765459 0.98802566
+Axis point 205.51330839 190.40266057 0.00000000
+Rotation angle (degrees) 68.58845304
+Shift along axis 140.64855489
+> select subtract #19
+Nothing selected
+> vop add #15-19
+Opened volume sum as #20, grid size 118,161,267, pixel 1.07,1.07,1.07, shown
+at step 1, values float32
+> select add #20
+models selected
+> vop add #15-19
+Opened volume sum as #21, grid size 118,161,267, pixel 1.07,1.07,1.07, shown
+at step 1, values float32
+> close #14
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #20,0.86864,0.46575,0.16892,-93.705,-0.46605,0.88384,-0.040353,111.45,-0.16809,-0.043673,0.9848,173.6
+> view matrix models
+> #20,0.88171,0.43881,0.17328,-91.882,-0.446,0.89503,0.0028778,101.51,-0.15382,-0.07982,0.98487,177.23
+> view matrix models
+> #20,-0.67424,-0.72546,-0.13821,548.71,0.7188,-0.6876,0.10262,119.05,-0.16947,-0.030153,0.98507,171.24
+> ui mousemode right "translate selected models"
+> view matrix models
+> #20,-0.67424,-0.72546,-0.13821,474.53,0.7188,-0.6876,0.10262,168.49,-0.16947,-0.030153,0.98507,170.64
+> select add #21
+models selected
+> select subtract #21
+models selected
+> color #21 #e93323ff models
+> view matrix models
+> #20,-0.67424,-0.72546,-0.13821,479.3,0.7188,-0.6876,0.10262,163.75,-0.16947,-0.030153,0.98507,181.82
+> view matrix models
+> #20,-0.67424,-0.72546,-0.13821,478.68,0.7188,-0.6876,0.10262,190.53,-0.16947,-0.030153,0.98507,178.85
+> view matrix models
+> #20,-0.67424,-0.72546,-0.13821,498.32,0.7188,-0.6876,0.10262,179.02,-0.16947,-0.030153,0.98507,206.18
+> view matrix models
+> #20,-0.67424,-0.72546,-0.13821,500.61,0.7188,-0.6876,0.10262,166.72,-0.16947,-0.030153,0.98507,203.92
+> view matrix models
+> #20,-0.67424,-0.72546,-0.13821,495.09,0.7188,-0.6876,0.10262,168.3,-0.16947,-0.030153,0.98507,203.07
+> view matrix models
+> #20,-0.67424,-0.72546,-0.13821,493.65,0.7188,-0.6876,0.10262,162.05,-0.16947,-0.030153,0.98507,203.41
+> view matrix models
+> #20,-0.67424,-0.72546,-0.13821,491.13,0.7188,-0.6876,0.10262,163.17,-0.16947,-0.030153,0.98507,203.15
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #20,-0.56715,-0.81426,-0.12381,481.12,0.80634,-0.57957,0.11797,118.79,-0.16781,-0.032924,0.98527,203.27
+> ui mousemode right "translate selected models"
+> view matrix models
+> #20,-0.56715,-0.81426,-0.12381,471.29,0.80634,-0.57957,0.11797,130.18,-0.16781,-0.032924,0.98527,202.97
+> view matrix models
+> #20,-0.56715,-0.81426,-0.12381,477.27,0.80634,-0.57957,0.11797,126.54,-0.16781,-0.032924,0.98527,203.18
+> fitmap #20 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 3652 points
+correlation = 0.5209, correlation about mean = 0.1025, overlap = 311.2
+steps = 68, shift = 1.19, angle = 0.543 degrees
+Position of volume sum (#20) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.53751255 -0.83238207 -0.13498276 476.26178215
+.82720586 -0.55156506 0.10726807 115.93902707
+-0.16373979 -0.05400060 0.98502447 206.46019489
+Axis -0.09670397 0.01724401 0.99516380
+Axis point 217.61797013 188.95155133 0.00000000
+Rotation angle (degrees) 123.50615538
+Shift along axis 161.40456216
+> fitmap #20 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 3652 points
+correlation = 0.521, correlation about mean = 0.1031, overlap = 311.2
+steps = 60, shift = 0.0181, angle = 0.0114 degrees
+Position of volume sum (#20) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.53740677 -0.83243401 -0.13508361 476.24321251
+.82728290 -0.55147064 0.10715940 115.89638568
+-0.16369777 -0.05416418 0.98502248 206.49600510
+Axis -0.09672928 0.01715699 0.99516284
+Axis point 217.61646480 188.95446382 0.00000000
+Rotation angle (degrees) 123.49934614
+Shift along axis 161.41892047
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #20,-0.47855,-0.87088,-0.11208,466.67,0.86331,-0.48996,0.12094,94.315,-0.16024,-0.038884,0.98631,201.86
+> ui mousemode right "translate selected models"
+> view matrix models
+> #20,-0.47855,-0.87088,-0.11208,466.69,0.86331,-0.48996,0.12094,98.493,-0.16024,-0.038884,0.98631,201.5
+> fitmap #20 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 3652 points
+correlation = 0.5234, correlation about mean = 0.1111, overlap = 311.5
+steps = 132, shift = 5.64, angle = 3.74 degrees
+Position of volume sum (#20) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.51122605 -0.85009529 -0.12643546 472.23064518
+.84562509 -0.52380892 0.10267626 104.88189171
+-0.15351262 -0.05442622 0.98664667 203.47580651
+Axis -0.09223973 0.01589784 0.99560991
+Axis point 216.82875568 187.47959563 0.00000000
+Rotation angle (degrees) 121.61400961
+Shift along axis 160.69149962
+> view matrix models
+> #20,-0.53427,-0.83728,-0.11624,466.13,0.83084,-0.54547,0.11031,116.95,-0.15577,-0.037638,0.98708,204.4
+> view matrix models
+> #20,-0.53427,-0.83728,-0.11624,465.37,0.83084,-0.54547,0.11031,119.72,-0.15577,-0.037638,0.98708,204.79
+> view matrix models
+> #20,-0.53427,-0.83728,-0.11624,467.07,0.83084,-0.54547,0.11031,118.89,-0.15577,-0.037638,0.98708,204.57
+> fitmap #20 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 3652 points
+correlation = 0.6047, correlation about mean = 0.265, overlap = 361.9
+steps = 116, shift = 4.33, angle = 3.32 degrees
+Position of volume sum (#20) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+-0.55568700 -0.82091301 -0.13158187 475.12780420
+.81346857 -0.56954036 0.11786717 129.04962568
+-0.17169988 -0.04154046 0.98427310 211.03652867
+Axis -0.09704433 0.02442308 0.99498036
+Axis point 215.01270667 191.06010667 0.00000000
+Rotation angle (degrees) 124.78350405
+Shift along axis 167.02053050
+> color #20 #e93323ff models
+> select subtract #20
+Nothing selected
+> hide #!20 models
+> hide #!21 models
+> show #!21 models
+> show #!20 models
+> show #!19 models
+> hide #!20 models
+> show #!20 models
+> hide #!21 models
+> hide #!19 models
+> show #13 models
+> hide #13 models
+> show #!15 models
+> select add #15
+models selected
+> show #!21 models
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,0.65462,0.74352,0.13657,-86.491,-0.73833,0.66762,-0.095664,216.09,-0.1623,-0.038207,0.986,171.28
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,0.65462,0.74352,0.13657,-107.47,-0.73833,0.66762,-0.095664,242.68,-0.1623,-0.038207,0.986,173.21
+> view matrix models
+> #15,0.65462,0.74352,0.13657,-116.4,-0.73833,0.66762,-0.095664,221.74,-0.1623,-0.038207,0.986,173.18
+> view matrix models
+> #15,0.65462,0.74352,0.13657,-114.03,-0.73833,0.66762,-0.095664,230.85,-0.1623,-0.038207,0.986,192.09
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,0.655,0.74365,0.13402,-114,-0.7388,0.66748,-0.092974,230.84,-0.15859,-0.038114,0.98661,191.16
+> view matrix models
+> #15,0.1593,0.98559,0.056828,-25.949,-0.96866,0.16716,-0.18374,361.15,-0.19059,-0.025776,0.98133,197.33
+> ui mousemode right zoom
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,0.1593,0.98559,0.056828,-26.975,-0.96866,0.16716,-0.18374,363.39,-0.19059,-0.025776,0.98133,199.41
+> view matrix models
+> #15,0.1593,0.98559,0.056828,-31.325,-0.96866,0.16716,-0.18374,358.14,-0.19059,-0.025776,0.98133,200.05
+> view matrix models
+> #15,0.1593,0.98559,0.056828,-33.368,-0.96866,0.16716,-0.18374,360.99,-0.19059,-0.025776,0.98133,199.29
+> fitmap #13 inMap #6
+Fit molecule core_one_layer (#13) to map
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) using 24002 atoms
+average map value = 0.4407, steps = 48
+shifted from previous position = 0.447
+rotated from previous position = 0.307 degrees
+atoms outside contour = 14088, contour level = 0.5
+Position of core_one_layer (#13) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.99717284 0.07352320 -0.01551330 -11.60335845
+-0.07367435 0.99723799 -0.00940636 15.75486569
+.01477887 0.01052270 0.99983542 100.40149487
+Axis 0.13146009 -0.19981932 -0.97097399
+Axis point -62.21426128 -27.23754412 0.00000000
+Rotation angle (degrees) 4.34712746
+Shift along axis -102.16074489
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.6783, correlation about mean = 0.2301, overlap = 102.4
+steps = 52, shift = 3.01, angle = 1.47 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.14794382 0.98837851 0.03493632 -27.95683282
+-0.97321181 0.15177776 -0.17269131 365.23039908
+-0.17598693 -0.00845182 0.98435622 191.99949836
+Axis 0.08296087 0.10654184 -0.99084122
+Axis point 216.22734039 201.79303557 0.00000000
+Rotation angle (degrees) 81.83415422
+Shift along axis -153.64802106
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.6717, correlation about mean = 0.214, overlap = 102.5
+steps = 48, shift = 0.173, angle = 0.539 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.15709027 0.98695171 0.03534077 -29.84974816
+-0.97152830 0.16086386 -0.17394134 363.68498905
+-0.17735676 -0.00701007 0.98412166 192.08246675
+Axis 0.08443427 0.10758296 -0.99060424
+Axis point 216.72261613 202.19042867 0.00000000
+Rotation angle (degrees) 81.31292116
+Shift along axis -153.67174074
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.6799, correlation about mean = 0.238, overlap = 106.7
+steps = 64, shift = 1.49, angle = 1.07 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.16434476 0.98592610 0.03066794 -30.51449230
+-0.96743979 0.16717441 -0.19003412 363.70687562
+-0.19248649 0.00156173 0.98129838 194.36536612
+Axis 0.09699165 0.11296757 -0.98885335
+Axis point 219.89634204 202.17375508 0.00000000
+Rotation angle (degrees) 81.00149040
+Shift along axis -154.07141179
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.6794, correlation about mean = 0.2368, overlap = 106.7
+steps = 44, shift = 0.0144, angle = 0.164 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.16712241 0.98544775 0.03102946 -31.12337225
+-0.96703482 0.16997029 -0.18961478 363.17951239
+-0.19212954 0.00168231 0.98136813 194.25495170
+Axis 0.09688465 0.11302149 -0.98885768
+Axis point 219.91975467 202.30770624 0.00000000
+Rotation angle (degrees) 80.83777019
+Shift along axis -154.05878689
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.6795, correlation about mean = 0.2365, overlap = 106.7
+steps = 44, shift = 0.0182, angle = 0.263 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.17156608 0.98465907 0.03180568 -32.10619590
+-0.96631541 0.17448081 -0.18918503 362.33273226
+-0.19183224 0.00172341 0.98142622 194.18945049
+Axis 0.09676009 0.11334871 -0.98883242
+Axis point 219.99174690 202.55559721 0.00000000
+Rotation angle (degrees) 80.57615373
+Shift along axis -154.05747676
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.6797, correlation about mean = 0.2366, overlap = 106.8
+steps = 48, shift = 0.0121, angle = 0.166 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.17434055 0.98415126 0.03242952 -32.73197845
+-0.96581513 0.17732341 -0.18909667 361.80934175
+-0.19185024 0.00164629 0.98142283 194.19767804
+Axis 0.09672229 0.11372819 -0.98879254
+Axis point 220.06035587 202.74105662 0.00000000
+Rotation angle (degrees) 80.41309491
+Shift along axis -154.03920528
+> view matrix models
+> #15,0.19609,0.97932,0.049834,-38.307,-0.9632,0.20189,-0.17743,355.78,-0.18383,-0.013208,0.98287,196.14
+> fitmap #15 inMap #6
+Fit map volume sum in map J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone
+using 574 points
+correlation = 0.6797, correlation about mean = 0.2355, overlap = 106.8
+steps = 84, shift = 2.06, angle = 0.464 degrees
+Position of volume sum (#15) relative to
+J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone (#6) coordinates:
+Matrix rotation and translation
+.18216662 0.98268620 0.03381062 -34.45869709
+-0.96449032 0.18527011 -0.18823763 360.29829470
+-0.19124262 0.00168060 0.98154136 194.04200771
+Axis 0.09643857 0.11427977 -0.98875666
+Axis point 220.17262685 203.18881566 0.00000000
+Rotation angle (degrees) 79.95107504
+Shift along axis -154.00866832
+> view matrix models
+> #15,0.20388,0.97766,0.051194,-39.869,-0.96168,0.2098,-0.17654,354.43,-0.18334,-0.013239,0.98296,195.53
+> view matrix models
+> #15,0.20388,0.97766,0.051194,-40.413,-0.96168,0.2098,-0.17654,354.93,-0.18334,-0.013239,0.98296,195.74
+> view matrix models
+> #15,0.20388,0.97766,0.051194,-40.473,-0.96168,0.2098,-0.17654,355.02,-0.18334,-0.013239,0.98296,195.29
+> vop add #15,20,21
+Opened volume sum as #14, grid size 285,292,321, pixel 1.07,1.07,1.07, shown
+at step 1, values float32
+> select subtract #15
+Nothing selected
+> hide #!14 models
+> show #!14 models
+> color #14 #e93323ff models
+> ui tool show "Map Eraser"
+> hide #!6 models
+> hide #5 models
+> select add #22
+model selected
+> ui mousemode right "translate selected models"
+> view matrix models #22,1,0,0,98.4,0,1,0,58.461,0,0,1,255.05
+> view matrix models #22,1,0,0,113.34,0,1,0,205.53,0,0,1,228.58
+> view matrix models #22,1,0,0,125.15,0,1,0,147.98,0,0,1,282.96
+> view matrix models #22,1,0,0,133.82,0,1,0,213.31,0,0,1,283.47
+> view matrix models #22,1,0,0,136,0,1,0,231.85,0,0,1,343.99
+> view matrix models #22,1,0,0,132.65,0,1,0,230.53,0,0,1,352.48
+> view matrix models #22,1,0,0,130.81,0,1,0,223.71,0,0,1,349.79
+> volume erase #14 center 130.81,223.71,349.79 radius 15.256
+> view matrix models #22,1,0,0,217.63,0,1,0,161.92,0,0,1,37.269
+> volume erase #14 center 217.63,161.92,37.269 radius 15.256
+> view matrix models #22,1,0,0,228.89,0,1,0,136.72,0,0,1,42.686
+> view matrix models #22,1,0,0,229.23,0,1,0,136.58,0,0,1,47.063
+> volume erase #14 center 229.23,136.58,47.063 radius 15.256
+> show #!6 models
+> show #5 models
+> show #!15 models
+> hide #!15 models
+> close #15-19
+> show #!20 models
+> hide #!20 models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/T171_glycan.mrc
+Opened T171_glycan.mrc as #15, grid size 10,12,11, pixel 1.07,1.07,1.07, shown
+at level 1.07, step 1, values float32
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/T171_glycan.mrc
+Opened T171_glycan.mrc as #16, grid size 10,12,11, pixel 1.07,1.07,1.07, shown
+at level 1.07, step 1, values float32
+> select add #15
+models selected
+> view matrix models #15,1,0,0,81.557,0,1,0,-176.46,0,0,1,8.4633
+> select add #16
+models selected
+> view matrix models
+> #15,1,0,0,168.99,0,1,0,-367.74,0,0,1,7.3803,#16,1,0,0,87.431,0,1,0,-191.28,0,0,1,-1.083
+> view matrix models
+> #15,1,0,0,159.65,0,1,0,-348.06,0,0,1,3.8907,#16,1,0,0,78.095,0,1,0,-171.61,0,0,1,-4.5726
+> select subtract #15
+models selected
+> view matrix models #16,1,0,0,48.799,0,1,0,-109.38,0,0,1,-13.18
+> select add #15
+models selected
+> select subtract #16
+models selected
+> view matrix models #15,1,0,0,48.876,0,1,0,-109.58,0,0,1,-13.344
+> select add #16
+models selected
+> view matrix models
+> #15,1,0,0,-121.47,0,1,0,50.783,0,0,1,-66.445,#16,1,0,0,-121.54,0,1,0,50.987,0,0,1,-66.281
+> volume #15 level 0.055
+> volume #16 level 0.055
+> view matrix models
+> #15,1,0,0,-97.517,0,1,0,79.387,0,0,1,-12.339,#16,1,0,0,-97.595,0,1,0,79.591,0,0,1,-12.175
+> view matrix models
+> #15,1,0,0,-89.467,0,1,0,78.554,0,0,1,-11.913,#16,1,0,0,-89.545,0,1,0,78.758,0,0,1,-11.749
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #15,-0.60526,0.22508,0.76355,112.1,-0.70641,-0.59403,-0.38485,509.64,0.36695,-0.77231,0.51854,87.789,#16,-0.60526,0.22508,0.76355,112.32,-0.70641,-0.59403,-0.38485,509.51,0.36695,-0.77231,0.51854,87.688
+> view matrix models
+> #15,-0.9482,0.17181,-0.26722,353.94,0.0082286,-0.82757,-0.5613,412.75,-0.31758,-0.53442,0.78329,163.83,#16,-0.9482,0.17181,-0.26722,354.01,0.0082286,-0.82757,-0.5613,412.49,-0.31758,-0.53442,0.78329,163.88
+> ui mousemode right "translate selected models"
+> view matrix models
+> #15,-0.9482,0.17181,-0.26722,353.23,0.0082286,-0.82757,-0.5613,407.9,-0.31758,-0.53442,0.78329,163.28,#16,-0.9482,0.17181,-0.26722,353.29,0.0082286,-0.82757,-0.5613,407.64,-0.31758,-0.53442,0.78329,163.32
+> fitmap #15 inMap #14
+Fit map T171_glycan.mrc in map volume sum using 64 points
+correlation = 0.9779, correlation about mean = 0.7705, overlap = 28.38
+steps = 52, shift = 1.59, angle = 45.8 degrees
+Position of T171_glycan.mrc (#15) relative to volume sum (#14) coordinates:
+Matrix rotation and translation
+.26574766 0.94167126 -0.20647863 30.13926772
+-0.96228605 0.27203133 0.00212529 309.29980777
+.05816998 0.19812671 0.97844881 -208.78667095
+Axis 0.10143799 -0.13696545 -0.98536836
+Axis point 223.76722580 160.40016525 0.00000000
+Rotation angle (degrees) 75.04182299
+Shift along axis 166.42565887
+> fitmap #16 inMap #14
+Fit map T171_glycan.mrc in map volume sum using 64 points
+correlation = 0.9779, correlation about mean = 0.7707, overlap = 28.38
+steps = 72, shift = 1.48, angle = 45.8 degrees
+Position of T171_glycan.mrc (#16) relative to volume sum (#14) coordinates:
+Matrix rotation and translation
+.26352212 0.94202443 -0.20771635 30.77106635
+-0.96289380 0.26987067 0.00231542 309.69744322
+.05823773 0.19939863 0.97818637 -208.93560024
+Axis 0.10193265 -0.13755309 -0.98523545
+Axis point 223.82879869 160.32940012 0.00000000
+Rotation angle (degrees) 75.17962342
+Shift along axis 166.38749516
+> view matrix models
+> #15,-0.88363,0.46809,0.010071,263.65,-0.46772,-0.88349,0.026277,423.39,0.021197,0.018508,0.9996,-73.393,#16,-0.88467,0.46611,0.0099912,264.16,-0.46571,-0.88451,0.027553,422.89,0.02168,0.019722,0.99957,-73.661
+> hide #!6 models
+> show #!6 models
+> view matrix models
+> #15,-0.88363,0.46809,0.010071,257.82,-0.46772,-0.88349,0.026277,423.7,0.021197,0.018508,0.9996,-70.621,#16,-0.88467,0.46611,0.0099912,258.33,-0.46571,-0.88451,0.027553,423.2,0.02168,0.019722,0.99957,-70.889
+> view matrix models
+> #15,-0.88363,0.46809,0.010071,257.46,-0.46772,-0.88349,0.026277,424.43,0.021197,0.018508,0.9996,-70.766,#16,-0.88467,0.46611,0.0099912,257.97,-0.46571,-0.88451,0.027553,423.93,0.02168,0.019722,0.99957,-71.033
+> view matrix models
+> #15,-0.88363,0.46809,0.010071,257.66,-0.46772,-0.88349,0.026277,424.05,0.021197,0.018508,0.9996,-70.308,#16,-0.88467,0.46611,0.0099912,258.17,-0.46571,-0.88451,0.027553,423.56,0.02168,0.019722,0.99957,-70.575
+> view matrix models
+> #15,-0.88363,0.46809,0.010071,257.77,-0.46772,-0.88349,0.026277,424.78,0.021197,0.018508,0.9996,-69.031,#16,-0.88467,0.46611,0.0099912,258.28,-0.46571,-0.88451,0.027553,424.28,0.02168,0.019722,0.99957,-69.299
+> view matrix models
+> #15,-0.88363,0.46809,0.010071,257.99,-0.46772,-0.88349,0.026277,424.47,0.021197,0.018508,0.9996,-69.805,#16,-0.88467,0.46611,0.0099912,258.5,-0.46571,-0.88451,0.027553,423.97,0.02168,0.019722,0.99957,-70.073
+> select subtract #15
+models selected
+> view matrix models
+> #16,-0.88467,0.46611,0.0099912,385.62,-0.46571,-0.88451,0.027553,384.6,0.02168,0.019722,0.99957,115.77
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #16,-0.26905,0.12831,0.95454,150.9,-0.20208,-0.97655,0.074304,332.32,0.94169,-0.17291,0.28867,51.144
+> view matrix models
+> #16,0.33963,-0.065923,0.93825,46.929,-0.095756,-0.99478,-0.035234,328.54,0.93567,-0.077877,-0.34417,137.51
+> view matrix models
+> #16,0.93113,-0.1667,0.32435,26.526,-0.089566,-0.9667,-0.23972,355.03,0.35352,0.19416,-0.91506,316.02
+> ui mousemode right "translate selected models"
+> view matrix models
+> #16,0.93113,-0.1667,0.32435,-15.012,-0.089566,-0.9667,-0.23972,344.14,0.35352,0.19416,-0.91506,294.87
+> view matrix models
+> #16,0.93113,-0.1667,0.32435,-36.915,-0.089566,-0.9667,-0.23972,285.89,0.35352,0.19416,-0.91506,276.48
+> view matrix models
+> #16,0.93113,-0.1667,0.32435,-12.483,-0.089566,-0.9667,-0.23972,311.85,0.35352,0.19416,-0.91506,307.15
+> view matrix models
+> #16,0.93113,-0.1667,0.32435,-19.164,-0.089566,-0.9667,-0.23972,315.47,0.35352,0.19416,-0.91506,303.79
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #16,0.85155,0.29219,0.43531,-81.447,-0.46228,0.81014,0.36052,61.988,-0.24732,-0.50823,0.82494,261.21
+> view matrix models
+> #16,0.80311,0.19403,0.56335,-77.33,-0.45274,0.81339,0.36527,58.725,-0.38735,-0.54841,0.74109,310.25
+> ui mousemode right "translate selected models"
+> view matrix models
+> #16,0.80311,0.19403,0.56335,-72.259,-0.45274,0.81339,0.36527,59.131,-0.38735,-0.54841,0.74109,303.64
+> view matrix models
+> #16,0.80311,0.19403,0.56335,-75.03,-0.45274,0.81339,0.36527,67.245,-0.38735,-0.54841,0.74109,303.79
+> view matrix models
+> #16,0.80311,0.19403,0.56335,-72.94,-0.45274,0.81339,0.36527,67.523,-0.38735,-0.54841,0.74109,303.32
+> fitmap #16 inMap #14
+Fit map T171_glycan.mrc in map volume sum using 64 points
+correlation = 0.9849, correlation about mean = 0.8521, overlap = 31.33
+steps = 48, shift = 0.319, angle = 38.3 degrees
+Position of T171_glycan.mrc (#16) relative to volume sum (#14) coordinates:
+Matrix rotation and translation
+.31362063 -0.93371772 -0.17266520 336.26677181
+.94540773 0.29008429 0.14851019 -64.70637291
+-0.08857914 -0.20981488 0.97372040 11.45202100
+Axis -0.18713138 -0.04391303 0.98135289
+Axis point 215.07222032 192.24759657 0.00000000
+Rotation angle (degrees) 73.21909920
+Shift along axis -48.84613804
+> view matrix models
+> #16,0.98369,0.082492,0.15984,-41.251,-0.087622,0.99583,0.025305,3.8836,-0.15708,-0.038897,0.98682,195.46
+> view matrix models
+> #16,0.98369,0.082492,0.15984,-39.082,-0.087622,0.99583,0.025305,15.539,-0.15708,-0.038897,0.98682,197.36
+> select subtract #16
+Nothing selected
+> vop add #14-16
+Opened volume sum as #17, grid size 287,294,323, pixel 1.07,1.07,1.07, shown
+at step 1, values float32
+> close #15-16
+> close #14
+> color #17 #e93323ff models
+> show #!20 models
+> hide #!20 models
+> close #20
+> show #!21 models
+> hide #!21 models
+> show #!21 models
+> hide #!21 models
+> close #21
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/T171_glycan_all.mrc
+> models #17
+> rename #17 id #34
+> show #!33 models
+> show #!32 models
+> show #!31 models
+> show #!30 models
+> vop add #30-34
+Opened volume sum as #14, grid size 428,415,424, pixel 1.07,1.07,1.07, shown
+at step 1, values float32
+> rename #14 id #35
+> rename #35 Glycan_all.mrc
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/Glycan_all.mrc
+> models #35
+> hide #5 models
+> ui mousemode right "map eraser"
+> select add #14
+model selected
+Can only have one displayed volume when erasing
+> hide #!35 models
+> show #!35 models
+Can only have one displayed volume when erasing
+> ui mousemode right "translate selected models"
+Can only have one displayed volume when erasing
+> view matrix models #14,1,0,0,134.75,0,1,0,174.46,0,0,1,367.85
+> view matrix models #14,1,0,0,144.89,0,1,0,170.97,0,0,1,362.9
+> view matrix models #14,1,0,0,147.71,0,1,0,171.85,0,0,1,362.62
+Can only have one displayed volume when erasing
+> hide #!6 models
+> volume erase #35 center 147.71,171.85,362.62 radius 13.485
+> view matrix models #14,1,0,0,133.72,0,1,0,184.29,0,0,1,20.575
+> volume erase #35 center 133.72,184.29,20.575 radius 13.485
+> view matrix models #14,1,0,0,141.04,0,1,0,199.39,0,0,1,21.339
+> view matrix models #14,1,0,0,139.95,0,1,0,196.67,0,0,1,14.819
+> view matrix models #14,1,0,0,130.38,0,1,0,204.43,0,0,1,18.9
+> volume erase #35 center 130.38,204.43,18.9 radius 13.485
+> show #!6 models
+> view matrix models #14,1,0,0,253.94,0,1,0,196.69,0,0,1,33.331
+> hide #!6 models
+> volume erase #35 center 253.94,196.69,33.331 radius 13.485
+> show #!6 models
+> show #5 models
+> show #3 models
+> show #!2 models
+> hide #!2 models
+> hide #3 models
+> show #!4 models
+> hide #!4 models
+> show #!2 models
+> hide #!2 models
+> show #3 models
+> show #!4 models
+> hide #!4 models
+> show #!4 models
+> show #!55 models
+> hide #3 models
+> show #3 models
+> hide #!4 models
+> show #!56 models
+> show #!57 models
+> show #!58 models
+> show #!2 models
+> hide #!2 models
+> show #!2 models
+> hide #3 models
+> hide #!2 models
+> show #!4 models
+> ui tool show "Color Zone"
+> color zone #4 near #55.1 distance 1.07
+> color single #4
+> hide #!35 models
+> show #!35 models
+> select add #55.1
+atoms, 1676 bonds, 197 residues, 1 model selected
+> select add #55.4
+atoms, 3352 bonds, 394 residues, 2 models selected
+> select add #55.2
+atoms, 5005 bonds, 594 residues, 3 models selected
+> select add #55.3
+atoms, 6599 bonds, 796 residues, 4 models selected
+> select add #55
+atoms, 8252 bonds, 996 residues, 6 models selected
+> select add #56
+atoms, 16504 bonds, 1992 residues, 12 models selected
+> select add #57
+atoms, 24756 bonds, 2988 residues, 18 models selected
+> select add #58
+atoms, 33008 bonds, 3984 residues, 24 models selected
+> color zone #4 near sel distance 1.16
+> color zone #4 near sel distance 1.17
+> color zone #4 near sel distance 1.49
+> color zone #4 near sel distance 10.75
+> select subtract #55
+atoms, 24756 bonds, 2988 residues, 18 models selected
+> select subtract #56
+atoms, 16504 bonds, 1992 residues, 12 models selected
+> select subtract #57
+atoms, 8252 bonds, 996 residues, 6 models selected
+> select subtract #58
+Nothing selected
+> view orient
+> view
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/1-Curvature_trend.png
+> width 1625 height 1210 supersample 3 transparentBackground true
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Local_refine_sheath_mask/DFlaB3/cryosparc_P1_J2108_003_volume_map_sharp.mrc
+Opened cryosparc_P1_J2108_003_volume_map_sharp.mrc as #14, grid size
+,360,360, pixel 1.07, shown at level 0.161, step 2, values float32
+> hide #!6 models
+> hide #5 models
+> hide #!4 models
+> hide #!35 models
+> volume #14 step 1
+> rename #14 id #101
+> hide #!101 models
+> show #5 models
+> show #!6 models
+> show #!35 models
+> view
+> show #!50 models
+> hide #!50 models
+> show #!100 models
+> hide #!58 models
+> hide #!57 models
+> hide #!56 models
+> hide #!55 models
+> hide #!35 models
+> hide #!6 models
+> hide #5 models
+> view orient
+> view
+> view orient
+> hide #!100 models
+> show #5 models
+> hide #5 models
+> show #!6 models
+> show #3 models
+> hide #3 models
+> show #!4 models
+> view
+> show #!2 models
+> hide #!2 models
+> show #5 models
+> hide #5 models
+> show #!7 models
+> show #!8 models
+> hide #!7 models
+> hide #!4 models
+> show #!101 models
+> hide #!101 models
+> show #!100 models
+> hide #!100 models
+> show #!100 models
+> hide #!100 models
+> show #!1 models
+> hide #!1 models
+> show #!1 models
+> hide #!1 models
+> show #!1 models
+> hide #!1 models
+> show #!101 models
+> hide #!101 models
+> show #!100 models
+> show #!59 models
+> hide #!8 models
+> hide #!6 models
+> show #!1 models
+> hide #!100 models
+> show #!100 models
+> hide #!100 models
+> show #!100 models
+> select add #59
+atoms, 88077 bonds, 10824 residues, 34 models selected
+> view matrix models
+> #59,0.99613,-0.086759,0.014154,103.36,0.086713,0.99623,0.0038109,40.32,-0.014431,-0.0025689,0.99989,8.4162
+> view matrix models
+> #59,0.99613,-0.086759,0.014154,11.684,0.086713,0.99623,0.0038109,-21.343,-0.014431,-0.0025689,0.99989,-2.7152
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #59,0.48905,0.87201,-0.020845,-67.828,0.81959,-0.45121,0.35311,46.436,0.29851,-0.18977,-0.93535,355.18
+> view matrix models
+> #59,0.44483,0.89265,0.072764,-81.805,0.84998,-0.44638,0.27979,54.154,0.28223,-0.06261,-0.9573,338.17
+> view matrix models
+> #59,0.44456,0.89345,0.064113,-80.205,0.8623,-0.44623,0.23942,59.707,0.24252,-0.051153,-0.9688,345.82
+> view matrix models
+> #59,0.43333,0.89261,0.12439,-89.815,0.89343,-0.44359,0.070775,86.761,0.11835,0.080465,-0.98971,348.61
+> view matrix models
+> #59,0.44471,0.89553,0.016012,-70.977,0.89534,-0.44398,-0.035249,107.73,-0.024458,0.030012,-0.99925,387.42
+> ui mousemode right "translate selected models"
+> view matrix models
+> #59,0.44471,0.89553,0.016012,-73.276,0.89534,-0.44398,-0.035249,101,-0.024458,0.030012,-0.99925,378.57
+> combine #59
+> rename #14 id #61
+> select subtract #59
+models selected
+> select add #61
+atoms, 88077 bonds, 10824 residues, 1 model selected
+> rename #61 FlaA1_sheath
+> view matrix models
+> #61,0.44471,0.89553,0.016012,-73.737,0.89534,-0.44398,-0.035249,100.19,-0.024458,0.030012,-0.99925,378.5
+> view matrix models
+> #61,0.44471,0.89553,0.016012,-76.113,0.89534,-0.44398,-0.035249,94.125,-0.024458,0.030012,-0.99925,372.17
+> view matrix models
+> #61,0.44471,0.89553,0.016012,-84.361,0.89534,-0.44398,-0.035249,104.91,-0.024458,0.030012,-0.99925,373.54
+> hide #!59 models
+> view matrix models
+> #61,0.44471,0.89553,0.016012,-67.346,0.89534,-0.44398,-0.035249,103,-0.024458,0.030012,-0.99925,373.54
+> view matrix models
+> #61,0.44471,0.89553,0.016012,-68.453,0.89534,-0.44398,-0.035249,104.96,-0.024458,0.030012,-0.99925,373.44
+> view matrix models
+> #61,0.44471,0.89553,0.016012,-69.26,0.89534,-0.44398,-0.035249,98.544,-0.024458,0.030012,-0.99925,376.53
+> view matrix models
+> #61,0.44471,0.89553,0.016012,-67.547,0.89534,-0.44398,-0.035249,110.23,-0.024458,0.030012,-0.99925,375.92
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #61,0.59137,0.80636,-0.0080352,-74.068,0.80543,-0.59112,-0.043184,157.17,-0.039572,0.019066,-0.99903,380.88
+> fitmap #61 inMap #100
+Fit molecule FlaA1_sheath (#61) to map
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#100) using 86328 atoms
+average map value = 0.2764, steps = 96
+shifted from previous position = 5.64
+rotated from previous position = 3.59 degrees
+atoms outside contour = 52125, contour level = 0.28858
+Position of FlaA1_sheath (#61) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#100) coordinates:
+Matrix rotation and translation
+.84829887 -0.52951773 0.00018779 130.97114383
+.52951779 0.84829883 -0.00024639 -72.54891380
+-0.00002882 0.00030845 0.99999996 28.53912969
+Axis 0.00052392 0.00020454 0.99999984
+Axis point 192.10546620 192.27598389 0.00000000
+Rotation angle (degrees) 31.97288250
+Shift along axis 28.59290440
+> fitmap #61 inMap #100
+Fit molecule FlaA1_sheath (#61) to map
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#100) using 86328 atoms
+average map value = 0.2764, steps = 28
+shifted from previous position = 0.00266
+rotated from previous position = 0.00599 degrees
+atoms outside contour = 52112, contour level = 0.28858
+Position of FlaA1_sheath (#61) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#100) coordinates:
+Matrix rotation and translation
+.84835145 -0.52943348 0.00017799 130.94835125
+.52943354 0.84835142 -0.00021503 -72.54688658
+-0.00003714 0.00027665 0.99999997 28.54753106
+Axis 0.00046435 0.00020316 0.99999987
+Axis point 192.11506499 192.28307642 0.00000000
+Rotation angle (degrees) 31.96719128
+Shift along axis 28.59359425
+> fitmap #61 inMap #100
+Fit molecule FlaA1_sheath (#61) to map
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#100) using 86328 atoms
+average map value = 0.2764, steps = 24
+shifted from previous position = 0.00329
+rotated from previous position = 0.00503 degrees
+atoms outside contour = 52124, contour level = 0.28858
+Position of FlaA1_sheath (#61) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#100) coordinates:
+Matrix rotation and translation
+.84830624 -0.52950592 0.00017185 130.97029476
+.52950598 0.84830620 -0.00023469 -72.55079870
+-0.00002150 0.00029009 0.99999996 28.54082530
+Axis 0.00049554 0.00018257 0.99999986
+Axis point 192.11096864 192.28129792 0.00000000
+Rotation angle (degrees) 31.97208437
+Shift along axis 28.59247614
+> select subtract #61
+Nothing selected
+> hide #!1 models
+> select add #61
+atoms, 88077 bonds, 10824 residues, 1 model selected
+> view matrix models
+> #61,0.45231,0.85415,-0.25658,-9.8456,0.87592,-0.4796,-0.052451,126.65,-0.16786,-0.20102,-0.9651,436.33
+> ui mousemode right "translate selected models"
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #61,0.89216,-0.44693,0.06566,90.51,-0.45105,-0.88931,0.075396,435.31,0.024695,-0.096881,-0.99499,385.24
+> ui mousemode right "translate selected models"
+> view matrix models
+> #61,0.89216,-0.44693,0.06566,83.005,-0.45105,-0.88931,0.075396,433.53,0.024695,-0.096881,-0.99499,397.84
+> fitmap #61 inMap #100
+Fit molecule FlaA1_sheath (#61) to map
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#100) using 86328 atoms
+average map value = 0.0712, steps = 144
+shifted from previous position = 9.34
+rotated from previous position = 3.92 degrees
+atoms outside contour = 78919, contour level = 0.28858
+Position of FlaA1_sheath (#61) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#100) coordinates:
+Matrix rotation and translation
+-0.29364717 -0.95366390 0.06554801 418.83724064
+.95344455 -0.28727358 0.09174665 44.94744750
+-0.06866524 0.08943753 0.99362268 8.73400473
+Axis -0.00120781 0.07020158 0.99753209
+Axis point 193.07178637 177.29957122 0.00000000
+Rotation angle (degrees) 107.07654500
+Shift along axis 11.36195702
+> view matrix models
+> #61,0.90867,-0.40458,0.10307,77.088,-0.41053,-0.91077,0.04423,446.32,0.075975,-0.082502,-0.99369,386.78
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #61,0.98233,0.18617,0.019148,-33.349,0.18501,-0.98144,0.050508,343.88,0.028195,-0.046073,-0.99854,389.98
+> fitmap #61 inMap #100
+Fit molecule FlaA1_sheath (#61) to map
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#100) using 86328 atoms
+average map value = 0.1157, steps = 112
+shifted from previous position = 10.5
+rotated from previous position = 5.78 degrees
+atoms outside contour = 73597, contour level = 0.28858
+Position of FlaA1_sheath (#61) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#100) coordinates:
+Matrix rotation and translation
+.38229190 -0.92404156 -0.00031833 296.44335800
+.92404163 0.38229181 0.00034506 -58.94262749
+-0.00019714 -0.00042606 0.99999990 8.99230228
+Axis -0.00041726 -0.00006557 0.99999991
+Axis point 192.30983225 192.25944718 0.00000000
+Rotation angle (degrees) 67.52428597
+Shift along axis 8.87247294
+> select subtract #61
+Nothing selected
+> fitmap #61 inMap #100
+Fit molecule FlaA1_sheath (#61) to map
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#100) using 86328 atoms
+average map value = 0.1157, steps = 24
+shifted from previous position = 0.0039
+rotated from previous position = 0.0023 degrees
+atoms outside contour = 73597, contour level = 0.28858
+Position of FlaA1_sheath (#61) relative to
+WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc (#100) coordinates:
+Matrix rotation and translation
+.38226038 -0.92405460 -0.00032513 296.45098314
+.92405467 0.38226028 0.00036519 -58.94499442
+-0.00021316 -0.00044003 0.99999989 8.99563175
+Axis -0.00043570 -0.00006059 0.99999990
+Axis point 192.31390443 192.25588048 0.00000000
+Rotation angle (degrees) 67.52624093
+Shift along axis 8.87003801
+> volume zone #100 nearAtoms #61 range 5 invert false newMap true
+> minimalBounds true bondPointSpacing 2
+Opened WT_Td_3.12A_sheath_fromJ766_EMhanced.mrc zone as #14, grid size
+,204,232, pixel 1.07, shown at step 1, values float32
+> surface dust #14 size 10.7
+> rename #14 FlaA1_sheath_sym
+> show #5 models
+> hide #5 models
+> show #!6 models
+> color #14 #a9fab5ff models
+> hide #61 models
+> view
+> show #3 models
+> hide #3 models
+> hide #!6 models
+> hide #!14 models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Homo/DFlaB3/cryosparc_P1_J1838_006_volume_map_sharp.mrc
+Opened cryosparc_P1_J1838_006_volume_map_sharp.mrc as #15, grid size
+,360,360, pixel 1.07, shown at level 0.109, step 2, values float32
+> volume #15 step 1
+> surface dust #15 size 10.7
+> view orient
+> view
+> view orient
+> view
+> hide #!15 models
+> rename #15 id #102
+> show #!1 models
+> color single #4
+> color single #1
+> show #!4 models
+> hide #!4 models
+> hide #!1 models
+> show #!2 models
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Local_refine_sheath_mask/DFlaB3/cryosparc_P1_J2103_003_volume_map_sharp.mrc
+Opened cryosparc_P1_J2103_003_volume_map_sharp.mrc as #15, grid size
+,360,360, pixel 1.07, shown at level 0.152, step 2, values float32
+> hide #!2 models
+> surface dust #15 size 10.7
+> volume #15 step 1
+> volume #15 level 0.125
+> volume #15 level 0.13
+> view
+> color #15 #9bccffff models
+> color #15 #fff6b6ff models
+> hide #!15 models
+> show #!102 models
+> color #102 #fff6b6ff models
+> rename #15 id #103
+> show #!103 models
+> hide #!102 models
+> hide #!103 models
+> show #!102 models
+> hide #!102 models
+> show #!4 models
+> show #3 models
+> hide #3 models
+> select add #55.1
+atoms, 1676 bonds, 197 residues, 1 model selected
+> select subtract #55.1
+Nothing selected
+> select add #55.3
+atoms, 1594 bonds, 202 residues, 1 model selected
+> select subtract #55.3
+Nothing selected
+> show #!55 models
+> hide #55.1 models
+> hide #55.2 models
+> hide #55.4 models
+> hide #55.5 models
+> select add #55.3
+atoms, 1594 bonds, 202 residues, 1 model selected
+> volume zone #1 nearAtoms #55.3 range 5 invert false newMap true
+> minimalBounds true bondPointSpacing 2
+Opened J1272_Td_DFlaB3_3.51A_sheath_emhanced_map.mrc zone as #15, grid size
+,42,70, pixel 1.07, shown at step 1, values float32
+> select subtract #55.3
+Nothing selected
+> hide #!55 models
+> show #55.1 models
+> show #55.2 models
+> show #55.4 models
+> show #55.5 models
+> hide #!55 models
+> hide #!15 models
+> show #!15 models
+> volume #15 level 0.08057
+> hide #!4 models
+> volume #15 level 0.004969
+> surface dust #15 size 10.7
+> show #!52 models
+> hide #!52 models
+> show #!55 models
+> volume #15 level 0.6627
+> close #15
+> show #!2 models
+> hide #!2 models
+> show #3 models
+> hide #3 models
+> show #!4 models
+> volume zone #4 nearAtoms #55.3 range 5 invert false newMap true
+> minimalBounds true bondPointSpacing 2
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone zone as #15, grid size
+,39,70, pixel 1.07, shown at step 1, values float32
+> surface dust #15 size 10.7
+> hide #!55 models
+> surface dust #15 size 10.7
+> volume #15 level 0.08079
+> select add #55.3
+atoms, 1594 bonds, 202 residues, 1 model selected
+> select subtract #55.3
+Nothing selected
+> show #!55 models
+> hide #55.1 models
+> hide #55.2 models
+> hide #55.4 models
+> hide #55.5 models
+> color #15 #cacacc80 models
+> color #15 #a2a2a34d models
+> color #15 #f5f1ef41 models
+> volume #15 level 0.08137
+> surface dust #15 size 10.7
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/3-HEAT.png
+> width 1625 height 1210 supersample 3 transparentBackground true
+> hide #55.3 models
+> show #55.2 models
+> hide #!15 models
+> show #!4 models
+> volume zone #4 nearAtoms #55.2 range 5 invert false newMap true
+> minimalBounds true bondPointSpacing 2
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone zone as #16, grid size
+,51,69, pixel 1.07, shown at step 1, values float32
+> surface dust #16 size 10.7
+> color #16 #f5f1ef41 models
+> volume #16 level 0.1069
+> hide #!55 models
+> ui tool show "Map Eraser"
+> show #!55 models
+> select add #17
+model selected
+> ui mousemode right "translate selected models"
+> view matrix models #17,1,0,0,130.12,0,1,0,144.71,0,0,1,228.04
+> view matrix models #17,1,0,0,120.88,0,1,0,152.63,0,0,1,236.01
+> view matrix models #17,1,0,0,117.99,0,1,0,141.58,0,0,1,237.07
+> view matrix models #17,1,0,0,113.48,0,1,0,143.09,0,0,1,237.76
+> view matrix models #17,1,0,0,113.85,0,1,0,143.98,0,0,1,237.47
+> view matrix models #17,1,0,0,114.24,0,1,0,144.9,0,0,1,237.37
+> volume erase #16 center 114.24,144.9,237.37 radius 4.0899
+> view matrix models #17,1,0,0,124.47,0,1,0,143.35,0,0,1,238.47
+> volume erase #16 center 124.47,143.35,238.47 radius 4.0899
+> view matrix models #17,1,0,0,131.8,0,1,0,146.41,0,0,1,238.63
+> volume erase #16 center 131.8,146.41,238.63 radius 4.0899
+> view matrix models #17,1,0,0,133.5,0,1,0,148.35,0,0,1,236.79
+> volume erase #16 center 133.5,148.35,236.79 radius 4.0899
+> view matrix models #17,1,0,0,133.23,0,1,0,151.86,0,0,1,241.42
+> volume erase #16 center 133.23,151.86,241.42 radius 4.0899
+> view matrix models #17,1,0,0,131.01,0,1,0,160.16,0,0,1,242.23
+> volume erase #16 center 131.01,160.16,242.23 radius 4.0899
+> view matrix models #17,1,0,0,127.05,0,1,0,158.28,0,0,1,240.93
+> view matrix models #17,1,0,0,126.56,0,1,0,161.59,0,0,1,241.13
+> volume erase #16 center 126.56,161.59,241.13 radius 4.0899
+> view matrix models #17,1,0,0,126.88,0,1,0,159.84,0,0,1,242.02
+> view matrix models #17,1,0,0,127.3,0,1,0,157.81,0,0,1,242.76
+> volume erase #16 center 127.3,157.81,242.76 radius 4.0899
+> view matrix models #17,1,0,0,128.41,0,1,0,152.43,0,0,1,241.34
+> volume erase #16 center 128.41,152.43,241.34 radius 4.0899
+> view matrix models #17,1,0,0,127.08,0,1,0,154.46,0,0,1,244.44
+> volume erase #16 center 127.08,154.46,244.44 radius 4.0899
+> view matrix models #17,1,0,0,126.76,0,1,0,153.71,0,0,1,244.3
+> view matrix models #17,1,0,0,125.35,0,1,0,153.33,0,0,1,245.44
+> volume erase #16 center 125.35,153.33,245.44 radius 4.0899
+> view matrix models #17,1,0,0,118.77,0,1,0,157.42,0,0,1,239
+> view matrix models #17,1,0,0,116.71,0,1,0,158.19,0,0,1,250.17
+> view matrix models #17,1,0,0,108.49,0,1,0,153.85,0,0,1,248.25
+> volume erase #16 center 108.49,153.85,248.25 radius 4.0899
+> view matrix models #17,1,0,0,106.61,0,1,0,159.16,0,0,1,255.58
+> view matrix models #17,1,0,0,110.02,0,1,0,161.84,0,0,1,256.73
+> volume erase #16 center 110.02,161.84,256.73 radius 4.0899
+> view matrix models #17,1,0,0,112.11,0,1,0,164.58,0,0,1,254.72
+> volume erase #16 center 112.11,164.58,254.72 radius 4.0899
+> view matrix models #17,1,0,0,127.86,0,1,0,185.65,0,0,1,249.08
+> view matrix models #17,1,0,0,120.42,0,1,0,165.99,0,0,1,240.3
+> view matrix models #17,1,0,0,130.19,0,1,0,155.58,0,0,1,246.59
+> view matrix models #17,1,0,0,130.75,0,1,0,157.3,0,0,1,246.13
+> volume erase #16 center 130.75,157.3,246.13 radius 4.0899
+> view matrix models #17,1,0,0,130.41,0,1,0,167.17,0,0,1,246.59
+> view matrix models #17,1,0,0,130.37,0,1,0,166.7,0,0,1,247.14
+> volume erase #16 center 130.37,166.7,247.14 radius 4.0899
+> view matrix models #17,1,0,0,129.08,0,1,0,165.82,0,0,1,250.15
+> view matrix models #17,1,0,0,131.12,0,1,0,163.52,0,0,1,249.57
+> volume erase #16 center 131.12,163.52,249.57 radius 4.0899
+> view matrix models #17,1,0,0,129.58,0,1,0,162.79,0,0,1,247.19
+> view matrix models #17,1,0,0,130.09,0,1,0,163.13,0,0,1,247.04
+> volume erase #16 center 130.09,163.13,247.04 radius 4.0899
+> view matrix models #17,1,0,0,128.69,0,1,0,153.81,0,0,1,230.16
+> view matrix models #17,1,0,0,131.12,0,1,0,141.91,0,0,1,239.63
+> volume erase #16 center 131.12,141.91,239.63 radius 4.0899
+> view matrix models #17,1,0,0,139.98,0,1,0,146.3,0,0,1,287.87
+> view matrix models #17,1,0,0,134.68,0,1,0,136.57,0,0,1,293.04
+> view matrix models #17,1,0,0,134.23,0,1,0,136.11,0,0,1,292.08
+> volume erase #16 center 134.23,136.11,292.08 radius 4.0899
+> view matrix models #17,1,0,0,133.48,0,1,0,136.72,0,0,1,286.02
+> volume erase #16 center 133.48,136.72,286.02 radius 4.0899
+> view matrix models #17,1,0,0,135.92,0,1,0,139.38,0,0,1,287.02
+> view matrix models #17,1,0,0,136.08,0,1,0,138.81,0,0,1,287.4
+> volume erase #16 center 136.08,138.81,287.4 radius 4.0899
+> view matrix models #17,1,0,0,176.79,0,1,0,127.84,0,0,1,292.79
+> view matrix models #17,1,0,0,173.39,0,1,0,128.1,0,0,1,285.49
+> view matrix models #17,1,0,0,128.89,0,1,0,134.87,0,0,1,288.89
+> view matrix models #17,1,0,0,130.8,0,1,0,142.18,0,0,1,298.3
+> view matrix models #17,1,0,0,129.41,0,1,0,143.03,0,0,1,296.03
+> view matrix models #17,1,0,0,128.88,0,1,0,142.51,0,0,1,295.03
+> volume erase #16 center 128.88,142.51,295.03 radius 4.0899
+> view matrix models #17,1,0,0,128.02,0,1,0,142,0,0,1,294.33
+> volume erase #16 center 128.02,142,294.33 radius 4.0899
+> view matrix models #17,1,0,0,128.42,0,1,0,142.45,0,0,1,293.97
+> view matrix models #17,1,0,0,129.97,0,1,0,142.03,0,0,1,293.59
+> volume erase #16 center 129.97,142.03,293.59 radius 4.0899
+> view matrix models #17,1,0,0,126.42,0,1,0,142.83,0,0,1,293.54
+> volume erase #16 center 126.42,142.83,293.54 radius 4.0899
+> view matrix models #17,1,0,0,122.02,0,1,0,147.12,0,0,1,312.24
+> view matrix models #17,1,0,0,124.79,0,1,0,150.14,0,0,1,297.29
+> view matrix models #17,1,0,0,125.61,0,1,0,149.74,0,0,1,298.34
+> view matrix models #17,1,0,0,125.74,0,1,0,149.15,0,0,1,298.88
+> volume erase #16 center 125.74,149.15,298.88 radius 4.0899
+> view matrix models #17,1,0,0,125.71,0,1,0,149.18,0,0,1,298.45
+> view matrix models #17,1,0,0,127.94,0,1,0,148.62,0,0,1,298.52
+> volume erase #16 center 127.94,148.62,298.52 radius 4.0899
+> view matrix models #17,1,0,0,122.46,0,1,0,142.41,0,0,1,313.68
+> hide #55.2 models
+> show #55.1 models
+> hide #55.1 models
+> show #55.2 models
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/3-FlaA3.png
+> width 1625 height 1210 supersample 3 transparentBackground true
+> hide #55.2 models
+> show #55.1 models
+> hide #!16 models
+> volume zone #4 nearAtoms #55.1 range 5 invert false newMap true
+> minimalBounds true bondPointSpacing 2
+Opened cryosparc_P1_J2054_003_volume_map_sharp.mrc zone zone as #17, grid size
+,53,72, pixel 1.07, shown at step 1, values float32
+> color #17 #f5f1ef41 models
+> surface dust #17 size 10.7
+> ui tool show "Map Eraser"
+> ui mousemode right "translate selected models"
+> select add #18
+model selected
+> view matrix models #18,1,0,0,150.31,0,1,0,140.09,0,0,1,243.01
+> view matrix models #18,1,0,0,156.55,0,1,0,124.43,0,0,1,249.89
+> view matrix models #18,1,0,0,154.15,0,1,0,127.73,0,0,1,254.99
+> view matrix models #18,1,0,0,152.47,0,1,0,120.87,0,0,1,250.97
+> view matrix models #18,1,0,0,149.83,0,1,0,114.91,0,0,1,255.84
+> view matrix models #18,1,0,0,150.74,0,1,0,114.75,0,0,1,256.88
+> volume erase #17 center 150.74,114.75,256.88 radius 4.9474
+> view matrix models #18,1,0,0,148.83,0,1,0,114.86,0,0,1,253.82
+> view matrix models #18,1,0,0,142.3,0,1,0,119.07,0,0,1,254.42
+> view matrix models #18,1,0,0,142.46,0,1,0,120.58,0,0,1,253.2
+> volume erase #17 center 142.46,120.58,253.2 radius 4.9474
+> view matrix models #18,1,0,0,144.7,0,1,0,119.64,0,0,1,253.95
+> view matrix models #18,1,0,0,146.5,0,1,0,120.09,0,0,1,253.85
+> volume erase #17 center 146.5,120.09,253.85 radius 4.9474
+> view matrix models #18,1,0,0,148.18,0,1,0,127.33,0,0,1,253.36
+> view matrix models #18,1,0,0,148.71,0,1,0,125.41,0,0,1,252.13
+> volume erase #17 center 148.71,125.41,252.13 radius 4.9474
+> view matrix models #18,1,0,0,147.42,0,1,0,129.92,0,0,1,251.43
+> volume erase #17 center 147.42,129.92,251.43 radius 4.9474
+> view matrix models #18,1,0,0,142.88,0,1,0,134.57,0,0,1,251.23
+> view matrix models #18,1,0,0,143.74,0,1,0,130.85,0,0,1,250.25
+> volume erase #17 center 143.74,130.85,250.25 radius 4.9474
+> view matrix models #18,1,0,0,142.61,0,1,0,137.27,0,0,1,250.14
+> volume erase #17 center 142.61,137.27,250.14 radius 4.9474
+> view matrix models #18,1,0,0,122.69,0,1,0,130.7,0,0,1,297.98
+> view matrix models #18,1,0,0,119.87,0,1,0,147.09,0,0,1,293.78
+> volume erase #17 center 119.87,147.09,293.78 radius 4.9474
+> view matrix models #18,1,0,0,125.52,0,1,0,150.68,0,0,1,284.39
+> view matrix models #18,1,0,0,135.23,0,1,0,149.56,0,0,1,289.78
+> volume erase #17 center 135.23,149.56,289.78 radius 4.9474
+> view matrix models #18,1,0,0,134.04,0,1,0,149.47,0,0,1,286.87
+> view matrix models #18,1,0,0,131.88,0,1,0,151.32,0,0,1,287.91
+> view matrix models #18,1,0,0,129.53,0,1,0,144.59,0,0,1,290.41
+> volume erase #17 center 129.53,144.59,290.41 radius 4.9474
+> view matrix models #18,1,0,0,137.04,0,1,0,158.76,0,0,1,272.59
+> view matrix models #18,1,0,0,117.98,0,1,0,148.92,0,0,1,268.21
+> view matrix models #18,1,0,0,119.16,0,1,0,145.27,0,0,1,261.67
+> view matrix models #18,1,0,0,121.58,0,1,0,146.43,0,0,1,261.68
+> volume erase #17 center 121.58,146.43,261.68 radius 4.9474
+> view matrix models #18,1,0,0,134.44,0,1,0,139.49,0,0,1,305.82
+> volume erase #17 center 134.44,139.49,305.82 radius 4.9474
+> undo
+> view matrix models #18,1,0,0,144.03,0,1,0,100.01,0,0,1,297.81
+> view matrix models #18,1,0,0,143.99,0,1,0,98.129,0,0,1,282
+> view matrix models #18,1,0,0,158.16,0,1,0,110.55,0,0,1,292.86
+> view matrix models #18,1,0,0,153.74,0,1,0,116.86,0,0,1,278.6
+> view matrix models #18,1,0,0,157.49,0,1,0,119.84,0,0,1,281.15
+> volume erase #17 center 157.49,119.84,281.15 radius 4.9474
+> view matrix models #18,1,0,0,135.29,0,1,0,155.69,0,0,1,268.36
+> view matrix models #18,1,0,0,138.21,0,1,0,148.31,0,0,1,262.3
+> view matrix models #18,1,0,0,138.53,0,1,0,146.39,0,0,1,275.09
+> view matrix models #18,1,0,0,136.23,0,1,0,140.09,0,0,1,273.41
+> view matrix models #18,1,0,0,131.32,0,1,0,142.37,0,0,1,275.16
+> view matrix models #18,1,0,0,131.57,0,1,0,141.71,0,0,1,275.06
+> volume erase #17 center 131.57,141.71,275.06 radius 4.9474
+> view matrix models #18,1,0,0,130.23,0,1,0,150.78,0,0,1,289.46
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/3-FlaA2.png
+> width 1625 height 1210 supersample 3 transparentBackground true
+> hide #!17 models
+> show #55.2 models
+> show #55.3 models
+> show #55.4 models
+> show #55.5 models
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/3-Asy_conformation.png
+> width 1625 height 1210 supersample 3 transparentBackground true
+> show #13 models
+> hide #13 models
+> show #!60 models
+> ui mousemode right select
+> select #60.1/F:115
+atoms, 5 bonds, 1 residue, 1 model selected
+> select add #60
+atoms, 217305 bonds, 28314 residues, 4 models selected
+> select subtract #60
+Nothing selected
+> hide #!60 models
+> show #5 models
+> hide #5 models
+> split #60
+Split FlaB1_core_monox33_real_refine.pdb (#60.1) into 33 models
+Split FlaB1_core_monox33_real_refine.pdb (#60.2) into 33 models
+Split FlaB1_core_monox33_real_refine.pdb (#60.3) into 33 models
+Chain information for FlaB1_core_monox33_real_refine.pdb B #60.1.1
+---
+Chain | Description
+B | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb C #60.1.2
+---
+Chain | Description
+C | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb D #60.1.3
+---
+Chain | Description
+D | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb E #60.1.4
+---
+Chain | Description
+E | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb F #60.1.5
+---
+Chain | Description
+F | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb G #60.1.6
+---
+Chain | Description
+G | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb H #60.1.7
+---
+Chain | Description
+H | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb I #60.1.8
+---
+Chain | Description
+I | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb J #60.1.9
+---
+Chain | Description
+J | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb K #60.1.10
+---
+Chain | Description
+K | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb L #60.1.11
+---
+Chain | Description
+L | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb M #60.1.12
+---
+Chain | Description
+M | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb N #60.1.13
+---
+Chain | Description
+N | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb O #60.1.14
+---
+Chain | Description
+O | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb P #60.1.15
+---
+Chain | Description
+P | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb Q #60.1.16
+---
+Chain | Description
+Q | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb R #60.1.17
+---
+Chain | Description
+R | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb S #60.1.18
+---
+Chain | Description
+S | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb T #60.1.19
+---
+Chain | Description
+T | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb U #60.1.20
+---
+Chain | Description
+U | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb V #60.1.21
+---
+Chain | Description
+V | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb W #60.1.22
+---
+Chain | Description
+W | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb X #60.1.23
+---
+Chain | Description
+X | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb Y #60.1.24
+---
+Chain | Description
+Y | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb Z #60.1.25
+---
+Chain | Description
+Z | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb a #60.1.26
+---
+Chain | Description
+a | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb b #60.1.27
+---
+Chain | Description
+b | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb c #60.1.28
+---
+Chain | Description
+c | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb d #60.1.29
+---
+Chain | Description
+d | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb e #60.1.30
+---
+Chain | Description
+e | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb f #60.1.31
+---
+Chain | Description
+f | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb g #60.1.32
+---
+Chain | Description
+g | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb h #60.1.33
+---
+Chain | Description
+h | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb B #60.2.1
+---
+Chain | Description
+B | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb C #60.2.2
+---
+Chain | Description
+C | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb D #60.2.3
+---
+Chain | Description
+D | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb E #60.2.4
+---
+Chain | Description
+E | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb F #60.2.5
+---
+Chain | Description
+F | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb G #60.2.6
+---
+Chain | Description
+G | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb H #60.2.7
+---
+Chain | Description
+H | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb I #60.2.8
+---
+Chain | Description
+I | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb J #60.2.9
+---
+Chain | Description
+J | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb K #60.2.10
+---
+Chain | Description
+K | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb L #60.2.11
+---
+Chain | Description
+L | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb M #60.2.12
+---
+Chain | Description
+M | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb N #60.2.13
+---
+Chain | Description
+N | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb O #60.2.14
+---
+Chain | Description
+O | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb P #60.2.15
+---
+Chain | Description
+P | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb Q #60.2.16
+---
+Chain | Description
+Q | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb R #60.2.17
+---
+Chain | Description
+R | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb S #60.2.18
+---
+Chain | Description
+S | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb T #60.2.19
+---
+Chain | Description
+T | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb U #60.2.20
+---
+Chain | Description
+U | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb V #60.2.21
+---
+Chain | Description
+V | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb W #60.2.22
+---
+Chain | Description
+W | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb X #60.2.23
+---
+Chain | Description
+X | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb Y #60.2.24
+---
+Chain | Description
+Y | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb Z #60.2.25
+---
+Chain | Description
+Z | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb a #60.2.26
+---
+Chain | Description
+a | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb b #60.2.27
+---
+Chain | Description
+b | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb c #60.2.28
+---
+Chain | Description
+c | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb d #60.2.29
+---
+Chain | Description
+d | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb e #60.2.30
+---
+Chain | Description
+e | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb f #60.2.31
+---
+Chain | Description
+f | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb g #60.2.32
+---
+Chain | Description
+g | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb h #60.2.33
+---
+Chain | Description
+h | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb B #60.3.1
+---
+Chain | Description
+B | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb C #60.3.2
+---
+Chain | Description
+C | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb D #60.3.3
+---
+Chain | Description
+D | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb E #60.3.4
+---
+Chain | Description
+E | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb F #60.3.5
+---
+Chain | Description
+F | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb G #60.3.6
+---
+Chain | Description
+G | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb H #60.3.7
+---
+Chain | Description
+H | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb I #60.3.8
+---
+Chain | Description
+I | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb J #60.3.9
+---
+Chain | Description
+J | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb K #60.3.10
+---
+Chain | Description
+K | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb L #60.3.11
+---
+Chain | Description
+L | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb M #60.3.12
+---
+Chain | Description
+M | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb N #60.3.13
+---
+Chain | Description
+N | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb O #60.3.14
+---
+Chain | Description
+O | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb P #60.3.15
+---
+Chain | Description
+P | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb Q #60.3.16
+---
+Chain | Description
+Q | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb R #60.3.17
+---
+Chain | Description
+R | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb S #60.3.18
+---
+Chain | Description
+S | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb T #60.3.19
+---
+Chain | Description
+T | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb U #60.3.20
+---
+Chain | Description
+U | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb V #60.3.21
+---
+Chain | Description
+V | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb W #60.3.22
+---
+Chain | Description
+W | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb X #60.3.23
+---
+Chain | Description
+X | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb Y #60.3.24
+---
+Chain | Description
+Y | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb Z #60.3.25
+---
+Chain | Description
+Z | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb a #60.3.26
+---
+Chain | Description
+a | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb b #60.3.27
+---
+Chain | Description
+b | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb c #60.3.28
+---
+Chain | Description
+c | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb d #60.3.29
+---
+Chain | Description
+d | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb e #60.3.30
+---
+Chain | Description
+e | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb f #60.3.31
+---
+Chain | Description
+f | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb g #60.3.32
+---
+Chain | Description
+g | No description available
+Chain information for FlaB1_core_monox33_real_refine.pdb h #60.3.33
+---
+Chain | Description
+h | No description available
+> show #!60 models
+> select #60.1.5/F:209
+atoms, 8 bonds, 1 residue, 1 model selected
+> select add #60.1.8/I:112
+atoms, 14 bonds, 2 residues, 2 models selected
+> select add #60.1.10/K:123
+atoms, 24 bonds, 3 residues, 3 models selected
+> select add #60.1.11/L:115
+atoms, 29 bonds, 4 residues, 4 models selected
+> select add #60.2.12/M:176
+atoms, 33 bonds, 5 residues, 5 models selected
+> select add #60.1.13/N:105
+atoms, 41 bonds, 6 residues, 6 models selected
+> select subtract #60.2.12/M:176
+atoms, 37 bonds, 5 residues, 5 models selected
+> select add #60.2.15/P:76
+atoms, 41 bonds, 6 residues, 6 models selected
+> select add #60.1.5
+atoms, 2228 bonds, 291 residues, 6 models selected
+> select add #60.1.8
+atoms, 4417 bonds, 576 residues, 6 models selected
+> select add #60.1.10
+atoms, 6602 bonds, 861 residues, 6 models selected
+> select add #60.1.11
+atoms, 8792 bonds, 1146 residues, 6 models selected
+> select add #60.2.33/h:213
+atoms, 8800 bonds, 1147 residues, 7 models selected
+> select add #60.2
+atoms, 81223 bonds, 10583 residues, 39 models selected
+> select subtract #60.2
+atoms, 8788 bonds, 1145 residues, 5 models selected
+> select add #60.2.33/h:122
+atoms, 8795 bonds, 1146 residues, 6 models selected
+> select add #60.2.12/M:166
+atoms, 8805 bonds, 1147 residues, 7 models selected
+> select add #60.2.15/P:119
+atoms, 8809 bonds, 1148 residues, 8 models selected
+> select add #60.1.13/N:195
+atoms, 8813 bonds, 1149 residues, 8 models selected
+> select add #60.1.13
+atoms, 10996 bonds, 1433 residues, 8 models selected
+> select add #60.2.12
+atoms, 13181 bonds, 1718 residues, 8 models selected
+> select add #60.2.15
+atoms, 15372 bonds, 2003 residues, 8 models selected
+> select add #60.2.33
+atoms, 17560 bonds, 2288 residues, 8 models selected
+> select ~sel & ##selected
+Nothing selected
+> select #60.1.5/F:108
+atoms, 7 bonds, 1 residue, 1 model selected
+> select add #60.1.5
+atoms, 2195 bonds, 286 residues, 1 model selected
+> select add #60.2.33/h:126
+atoms, 2200 bonds, 287 residues, 2 models selected
+> select add #60.1.10/K:105
+atoms, 2208 bonds, 288 residues, 3 models selected
+> select add #60.1.8/I:122
+atoms, 2215 bonds, 289 residues, 4 models selected
+> select add #60.1.10/K:205
+atoms, 2223 bonds, 290 residues, 4 models selected
+> select add #60.2.15/P:122
+atoms, 2230 bonds, 291 residues, 5 models selected
+> select add #60.1.13/N:195
+atoms, 2234 bonds, 292 residues, 6 models selected
+> select add #60.2.12/M:59
+atoms, 2241 bonds, 293 residues, 7 models selected
+> select add #60.1.8
+atoms, 4429 bonds, 578 residues, 7 models selected
+> select add #60.1.10
+atoms, 6608 bonds, 862 residues, 7 models selected
+> select add #60.1.13
+atoms, 8799 bonds, 1147 residues, 7 models selected
+> select add #60.2.12
+atoms, 10987 bonds, 1432 residues, 7 models selected
+> select add #60.2.15
+atoms, 13175 bonds, 1717 residues, 7 models selected
+> select add #60.2.33
+atoms, 15365 bonds, 2002 residues, 7 models selected
+> select add #60.1.4/E:105
+atoms, 15373 bonds, 2003 residues, 8 models selected
+> select add #60.1.4
+atoms, 17560 bonds, 2288 residues, 8 models selected
+> select subtract #60.2.12/M:205
+atoms, 17550 bonds, 2287 residues, 8 models selected
+> select add #60.2.12
+atoms, 17560 bonds, 2288 residues, 8 models selected
+> select subtract #60.2.12
+atoms, 15365 bonds, 2002 residues, 7 models selected
+> hide #60.1.1 models
+> hide #60.1.2 models
+> hide #60.1.3 models
+> hide #60.1.6 models
+> hide #60.1.7 models
+> hide #60.1.9 models
+> hide #60.1.11 models
+> hide #60.1.12 models
+> hide #60.1.14-33 target m
+> hide #60.2.1-14 target m
+> hide #60.2.16-32 target m
+> hide #!60.3 models
+> select clear
+> select add #55.3
+atoms, 1594 bonds, 202 residues, 1 model selected
+> select add #60.1.5/F:112
+atoms, 1600 bonds, 203 residues, 2 models selected
+> select add #60.1.5
+atoms, 3789 bonds, 488 residues, 2 models selected
+> hbonds sel reveal true
+hydrogen bonds found
+> hide sel atoms
+> interfaces select & ~solvent
+Missing or invalid "atoms" argument: invalid atoms specifier
+> interfaces select & ~solvent
+Missing or invalid "atoms" argument: invalid atoms specifier
+> select add #55.2
+atoms, 5442 bonds, 688 residues, 3 models selected
+> interfaces select & ~solvent
+Missing or invalid "atoms" argument: invalid atoms specifier
+> ~hbonds
+> interfaces select & ~solvent
+Missing or invalid "atoms" argument: invalid atoms specifier
+> select subtract #60.1.5
+atoms, 3247 bonds, 402 residues, 2 models selected
+> hbonds sel reveal true
+hydrogen bonds found
+> interfaces select & ~solvent
+Missing or invalid "atoms" argument: invalid atoms specifier
+> interfaces select & ~solvent
+Missing or invalid "atoms" argument: invalid atoms specifier
+> select subtract #55.2
+atoms, 1594 bonds, 202 residues, 1 model selected
+> select add #55.2
+atoms, 3247 bonds, 134 pseudobonds, 402 residues, 3 models selected
+> select subtract #55.3
+atoms, 1653 bonds, 134 pseudobonds, 200 residues, 2 models selected
+> select add #55.3
+atoms, 3247 bonds, 346 pseudobonds, 402 residues, 3 models selected
+> interfaces select & ~solvent
+Missing or invalid "atoms" argument: invalid atoms specifier
+> select add #18
+atoms, 3247 bonds, 1188 pseudobonds, 402 residues, 3 models selected
+> select subtract #18
+atoms, 3247 bonds, 402 residues, 2 models selected
+> interfaces select & ~solvent
+Missing or invalid "atoms" argument: invalid atoms specifier
+> ui tool show Contacts
+> contacts distanceOnly 4.0 ignoreHiddenModels true
+distances
+> hide #!55 models
+> select add #55
+atoms, 8252 bonds, 9755 pseudobonds, 996 residues, 8 models selected
+> select subtract #55
+Nothing selected
+> close #18-19
+> show #60.2 target m
+> show #60.1.1-33 target m
+> show #!60.3 models
+> show #!6 models
+> hide #!6 models
+> hide #60.1.1-33#60.2.1-33#60.3.1-33 atoms
+> show #60.1.1-33#60.2.1-33#60.3.1-33 cartoons
+> select #60.1.8/I:112
+atoms, 6 bonds, 1 residue, 1 model selected
+> select subtract #60.1.8/I:112
+Nothing selected
+> select #60.1.8/I:112
+atoms, 6 bonds, 1 residue, 1 model selected
+> select #60.1.9/J:195
+atoms, 4 bonds, 1 residue, 1 model selected
+> select #60.1.33/h:195
+atoms, 4 bonds, 1 residue, 1 model selected
+> select #60.2.7/H:45
+atoms, 3 bonds, 1 residue, 1 model selected
+> select clear
+> select #60.1.8/I:108
+atoms, 7 bonds, 1 residue, 1 model selected
+> select add #60.1.9/J:94
+atoms, 11 bonds, 2 residues, 2 models selected
+> select add #60.1.33/h:195
+atoms, 15 bonds, 3 residues, 3 models selected
+> hide #60.1.1-7 target m
+> hide #60.1.10-32 target m
+> hide #!60.2 models
+> hide #!60.3 models
+> select add #60.1
+atoms, 72435 bonds, 9438 residues, 34 models selected
+> select subtract #60.1
+Nothing selected
+> color #60.1.8 #fff6b6ff
+> color #60.1.9 #ffdb8eff
+> color #60.1.9 #ffd72aff
+> color #60.1.9 #ffe58aff
+> color #60.1.9 #e700ffff
+> color #60.1.9 #ff8e00ff
+> color #60.1.9 #febe0eff
+> color #60.1.9 #fdd900ff
+> color #60.1.9 #febe0eff
+> color #60.1.9 #ffb512ff
+> color #60.1.33 #fff6b6ff
+> show #60.1.8-9,33 surfaces
+> show #!55 models
+> show #60.1.7 models
+> hide #60.1.7 models
+> show #60.1.1-7 target m
+> hide #60.1.1-7 target m
+> show #60.1.10-32 target m
+> hide #60.1.10-32 target m
+> show #!60.2 models
+> show #60.1.1-7,10-32#!60.1.8-9 target m
+> select #60.2.33/h:122
+atoms, 7 bonds, 1 residue, 1 model selected
+> select add #60.2
+atoms, 72435 bonds, 9438 residues, 34 models selected
+> select add #60
+atoms, 217305 bonds, 28314 residues, 103 models selected
+> select subtract #60
+models selected
+> color #60.1.31 #ffb512ff
+> select #60.2.33/h:122
+atoms, 7 bonds, 1 residue, 1 model selected
+> color #60.2 #ffb512ff models
+> select add #60.2.33
+atoms, 2195 bonds, 286 residues, 1 model selected
+> select subtract #60.2.33
+Nothing selected
+> select add #60.2.33
+atoms, 2195 bonds, 286 residues, 1 model selected
+> show sel surfaces
+> select #60.2.7/H:209
+atoms, 8 bonds, 1 residue, 1 model selected
+> color #60.2.7 #fff6b6ff
+> select add #60.2.7
+atoms, 2195 bonds, 286 residues, 1 model selected
+> show sel surfaces
+> select #60.1.5/F:111
+atoms, 8 bonds, 1 residue, 1 model selected
+> color #60.1.5 #ffb512ff
+> select add #60.1.5
+atoms, 2195 bonds, 286 residues, 1 model selected
+> show sel surfaces
+> select #60.1.5/F:55@NE2
+atom, 1 residue, 1 model selected
+> select #60.1.4/E:198
+atoms, 10 bonds, 1 residue, 1 model selected
+> select #60.1.4/E:122
+atoms, 7 bonds, 1 residue, 1 model selected
+> color #60.1.4 #fff6b6ff
+> select add #60.1.4
+atoms, 2195 bonds, 286 residues, 1 model selected
+> show sel surfaces
+> select clear
+> select #60.1.7/H:199
+atoms, 5 bonds, 1 residue, 1 model selected
+> color #60.1.7 #ffb512ff
+> select add #60.1.7
+atoms, 2195 bonds, 286 residues, 1 model selected
+> show sel surfaces
+> select #60.1.10/K:195
+atoms, 4 bonds, 1 residue, 1 model selected
+> select add #60.1.11/L:111
+atoms, 12 bonds, 2 residues, 2 models selected
+> select add #60.1.10
+atoms, 2203 bonds, 287 residues, 2 models selected
+> select add #60.1.11
+atoms, 4390 bonds, 572 residues, 2 models selected
+> show sel surfaces
+> select #60.1.33/h:195@CB
+atom, 1 residue, 1 model selected
+> select add #60.1.33
+atoms, 2195 bonds, 286 residues, 2 models selected
+> hide sel surfaces
+> select #60.1.7/H:209@NZ
+atom, 1 residue, 1 model selected
+> select add #60.1.7
+atoms, 2195 bonds, 286 residues, 2 models selected
+> hide sel surfaces
+> select clear
+> select #60.2.12/M:195
+atoms, 4 bonds, 1 residue, 1 model selected
+> select add #60.2
+atoms, 72435 bonds, 9438 residues, 34 models selected
+> select subtract #60.2
+models selected
+> select #60.2.12/M:205
+atoms, 8 bonds, 1 residue, 1 model selected
+> select add #60.2.12
+atoms, 2195 bonds, 286 residues, 1 model selected
+> show sel surfaces
+> select clear
+> select #60.1.10/K:192@OG1
+atom, 1 residue, 1 model selected
+> color #60.1.10 #fff6b6ff
+> select #60.1.11/L:183@CA
+atom, 1 residue, 1 model selected
+> color #60.1.11 #ffb512ff
+> select #60.2.15/P:115
+atoms, 5 bonds, 1 residue, 1 model selected
+> select add #60.1.13/N:198
+atoms, 15 bonds, 2 residues, 2 models selected
+> select add #60.1.14/O:108
+atoms, 22 bonds, 3 residues, 3 models selected
+> show sel surfaces
+> select add #60.1.13
+atoms, 2207 bonds, 288 residues, 6 models selected
+> select add #60.1.14
+atoms, 4395 bonds, 573 residues, 6 models selected
+> select add #60.2.15
+atoms, 6585 bonds, 858 residues, 6 models selected
+> show sel surfaces
+> select #60.2.15/P:209@O
+atom, 1 residue, 1 model selected
+> select #60.2.15/P:183@O
+atom, 1 residue, 1 model selected
+> color #60.2.15 #fff6b6ff
+> select #60.1.13/N:183@O
+atom, 1 residue, 1 model selected
+> color #60.1.13 #ffb512ff
+> select #60.1.14/O:184@CA
+atom, 1 residue, 1 model selected
+> color #60.1.14 #fff6b6ff
+> select add #55
+atoms, 8252 bonds, 997 residues, 8 models selected
+> select add #60
+atoms, 225557 bonds, 29310 residues, 110 models selected
+> select subtract #60
+atoms, 8252 bonds, 996 residues, 20 models selected
+> show sel surfaces
+> select clear
+Drag select of 2151 residues
+> select clear
+> select add #60.2.7/H:178@CA
+atom, 1 residue, 1 model selected
+> select add #60.2.33/h:191@OE2
+atoms, 2 residues, 3 models selected
+> select add #60.2.12/M:184@CA
+atoms, 3 residues, 5 models selected
+> select add #60.1.5/F:191@OE2
+atoms, 4 residues, 7 models selected
+> select add #60.1.4/E:185@CB
+atoms, 5 residues, 9 models selected
+> hide #!55 models
+> select add #60.1.8/I:181@CG
+atoms, 6 residues, 11 models selected
+> select add #60.1.9/J:184@OD1
+atoms, 7 residues, 13 models selected
+> select add #60.1.10/K:180@CB
+atoms, 8 residues, 15 models selected
+> select add #60.1.11/L:180@NH1
+atoms, 9 residues, 17 models selected
+> select add #60.2.15/P:185@OE2
+atoms, 10 residues, 19 models selected
+> select add #60.1.13/N:180@CD
+atoms, 11 residues, 21 models selected
+> select add #60.1.14/O:185@CG
+atoms, 12 residues, 23 models selected
+> hide #60.1.1-3 target m
+> hide #60.1.6#!60.1.7 target m
+> hide #60.1.12 models
+> hide #60.1.15-32#!60.1.33 target m
+> hide #60.2.1-6 target m
+> hide #60.2.8-11 target m
+> hide #60.2.13 models
+> hide #60.2.14 models
+> hide #60.2.16-32#!60.2.33 target m
+> show #!60.2.33 models
+> select clear
+> show #!54 models
+> hide #!54 models
+> show #!55 models
+> show #!14 models
+> hide #!14 models
+> show #13 models
+> hide #13 models
+> show #!7 models
+> hide #7.1,4,8,19,22,25,28,31#!55.1-5#!60.1.4-5,8-11,13-14#!60.2.7,12,15,33
+> atoms
+> show #7.1,4,8,19,22,25,28,31#!55.1-5#!60.1.4-5,8-11,13-14#!60.2.7,12,15,33
+> surfaces
+> show #61 models
+> color #61 #a9fab5ff
+> show
+> #61#!7.1,4,8,19,22,25,28,31#!55.1-5#!60.1.4-5,8-11,13-14#!60.2.7,12,15,33
+> surfaces
+> show
+> #!61#!7.1,4,8,19,22,25,28,31#!55.1-5#!60.1.4-5,8-11,13-14#!60.2.7,12,15,33
+> surfaces
+> hide #!61 models
+> show #7.32 models
+> hide #7.32 models
+> show #7.33 models
+> hide #7.33 models
+> show #7.30 models
+> hide #7.30 models
+> show #7.2 models
+> hide #7.2 models
+> show #7.3 models
+> hide #7.3 models
+> show #7.5 models
+> hide #7.5 models
+> show #7.7 models
+> hide #7.7 models
+> show #7.17 models
+> hide #7.17 models
+> show #7.17 models
+> show #7.18 models
+> hide #7.18 models
+> show #7.20 models
+> hide #7.20 models
+> show #7.21 models
+> hide #7.21 models
+> show #7.18 models
+> show
+> #7.17-18#!7.1,4,8,19,22,25,28,31#!55.1-5#!60.1.4-5,8-11,13-14#!60.2.7,12,15,33
+> surfaces
+> show #!56 models
+> show #!57 models
+> show
+> #56.1-5#57.1-5#!7.1,4,8,17-19,22,25,28,31#!55.1-5#!60.1.4-5,8-11,13-14#!60.2.7,12,15,33
+> surfaces
+> hide #!60 models
+> show #7.20 models
+> hide #7.20 models
+> show #7.21 models
+> hide #7.21 models
+> show #7.23 models
+> hide #7.23 models
+> show #7.26 models
+> hide #7.26 models
+> show #7.29 models
+> hide #7.29 models
+> show #7.32 models
+> hide #7.32 models
+> show #7.5 models
+> hide #7.5 models
+> show #7.2 models
+> hide #7.2 models
+> show #7.2 models
+> hide #7.2 models
+> show #7.2 models
+> hide #7.2 models
+> show #7.3 models
+> hide #7.3 models
+> show #7.5 models
+> show #7.7 models
+> show #7.5,7#!7.1,4,8,17-19,22,25,28,31#!55.1-5#!56.1-5#!57.1-5 surfaces
+> hide #!7.1 models
+> hide #!7.22 models
+> hide #!7.25 models
+> hide #!7.28 models
+> hide #!7.31 models
+> hide #!7.4 models
+> show #!7.1 models
+> show #!7.4 models
+> show #7.2 models
+> hide #7.2 models
+> show #7.20 models
+> hide #7.20 models
+> show #7.21 models
+> hide #7.21 models
+> show #!7.22 models
+> hide #!7.22 models
+> hide #!7.1 models
+> hide #!7.4 models
+> show #7.20 models
+> hide #7.20 models
+> show #7.21 models
+> hide #7.21 models
+> show #!7.22 models
+> show #7.23 models
+> hide #7.23 models
+> show #7.23 models
+> hide #7.23 models
+> show #7.24 models
+> show #7.23 models
+> show #7.21 models
+> show #7.20 models
+> hide #7.24 models
+> hide #7.23 models
+> show #7.20-21#!7.5,7-8,17-19,22#!55.1-5#!56.1-5#!57.1-5 surfaces
+> show #!14 models
+> hide #!14 models
+> show #!61 models
+> hide #!61 models
+> show #!61 models
+> hide #!61#!7.5,7-8,17-22#!55.1-5#!56.1-5#!57.1-5 atoms
+> hide #!7 models
+> hide #!61#!55.1-5#!56.1-5#!57.1-5 surfaces
+> show #!7 models
+> hide #!61#!7.5,7-8,17-22#!55.1-5#!56.1-5#!57.1-5 surfaces
+> hide #!7 models
+> show #!6 models
+> hide #!6 models
+> show #!4 models
+> hide #!4 models
+> show #!101 models
+> hide #!101 models
+> show #!7 models
+> select add #7
+atoms, 64056 bonds, 7872 residues, 25 models selected
+> select subtract #7
+models selected
+> hide #!7 models
+> show #!4 models
+> hide #!4 models
+> show #!2 models
+> hide #!2 models
+> show #!2 models
+> hide #!2 models
+> show #!2 models
+> hide #!2 models
+> show #!7 models
+> hide #!61 models
+> show #!14 models
+> ui tool show "Fit in Map"
+> hide #!7 models
+> show #!61 models
+> show #!6 models
+> hide #!6 models
+> show #!1 models
+> hide #!1 models
+> show #3 models
+> hide #3 models
+> show #!2 models
+> fitmap #61 inMap #2
+Fit molecule FlaA1_sheath (#61) to map
+cryosparc_P1_J2054_003_volume_map_sharp.mrc (#2) using 86328 atoms
+average map value = 0.07737, steps = 80
+shifted from previous position = 4.16
+rotated from previous position = 2.05 degrees
+atoms outside contour = 54575, contour level = 0.1
+Position of FlaA1_sheath (#61) relative to
+cryosparc_P1_J2054_003_volume_map_sharp.mrc (#2) coordinates:
+Matrix rotation and translation
+.95485517 0.29706878 0.00135745 -50.01252716
+.29707165 -0.95483906 -0.00555144 320.69397578
+-0.00035304 0.00570409 -0.99998369 395.30619579
+Axis 0.98864902 0.15024332 0.00025267
+Axis point 0.00000000 163.57812531 198.12136168
+Rotation angle (degrees) 179.67384894
+Shift along axis -1.16282781
+> fitmap #14 inMap #2
+Fit map FlaA1_sheath_sym in map cryosparc_P1_J2054_003_volume_map_sharp.mrc
+using 204486 points
+correlation = 0.7973, correlation about mean = 0.1562, overlap = 1.1e+04
+steps = 60, shift = 0.548, angle = 0.248 degrees
+Position of FlaA1_sheath_sym (#14) relative to
+cryosparc_P1_J2054_003_volume_map_sharp.mrc (#2) coordinates:
+Matrix rotation and translation
+.12761319 0.99182356 0.00095845 -24.47479725
+.99180276 -0.12760407 -0.00667099 28.26910221
+-0.00649414 0.00180189 -0.99997730 402.01842394
+Axis 0.75086800 0.66044973 -0.00184263
+Axis point 0.00000000 24.14314185 201.03284124
+Rotation angle (degrees) 179.67673218
+Shift along axis -0.44779185
+> hide #!2 models
+> show #!7 models
+> hide #!61 models
+> hide #!14 models
+> hide #!7 models
+> show #!7 models
+> show #!61 models
+> hide #!61 models
+> show #!61 models
+> hide #!61 models
+> show #!61 models
+> hide #!61 models
+> show #!61 models
+> hide #!61 models
+> show #!61 models
+> hide #!61 models
+> show #!61 models
+Drag select of 5637 residues
+> hide #61.1 models
+> hide #61.2 models
+> hide #61.3 models
+> hide #61.4 models
+> hide #61.9 models
+> hide #61.10 models
+> hide #61.11 models
+> hide #61.23 models
+> hide #61.24 models
+> hide #61.25 models
+> hide #61.26 models
+> hide #61.27 models
+> hide #61.28 models
+> hide #61.29 models
+> hide #61.30 models
+> hide #61.31 models
+> hide #61.32 models
+> hide #61.33 models
+> select add #61
+atoms, 88077 bonds, 11238 residues, 25 models selected
+> select subtract #61
+atoms, 414 residues, 39 models selected
+> select clear
+> hide #!7 models
+> show #!7 models
+> hide #61.5 models
+> hide #61.6 models
+> hide #61.7 models
+> hide #61.8 models
+> hide #!61 models
+> show #!61 models
+> show #61.1 models
+> show #61.2 models
+> show #61.3 models
+> show #61.4 models
+> show #61.5 models
+> show #61.6 models
+> show #61.7 models
+> show #61.8 models
+> show #61.9 models
+> show #61.10 models
+> show #61.11 models
+> show #61.1-33 target m
+> hide #61.1-33 target m
+> show #61.1-33 target m
+> show #!61#!7.5,7-8,17-22#!55.1-5#!56.1-5#!57.1-5 surfaces
+> hide #!61#!7.5,7-8,17-22#!55.1-5#!56.1-5#!57.1-5 surfaces
+> show #!61#!7.5,7-8,17-22#!55.1-5#!56.1-5#!57.1-5 cartoons
+> close #61
+> combine #7
+> fitmap #18 inMap #2
+Fit molecule combination (#18) to map
+cryosparc_P1_J2054_003_volume_map_sharp.mrc (#2) using 62784 atoms
+average map value = 0.08912, steps = 64
+shifted from previous position = 0.347
+rotated from previous position = 0.219 degrees
+atoms outside contour = 35801, contour level = 0.1
+Position of combination (#18) relative to
+cryosparc_P1_J2054_003_volume_map_sharp.mrc (#2) coordinates:
+Matrix rotation and translation
+.96782193 -0.25162009 -0.00283083 53.75558850
+-0.25163543 -0.96773436 -0.01303061 429.76496216
+.00053927 0.01332365 -0.99991108 365.09437754
+Axis 0.99192253 -0.12684388 -0.00057723
+Axis point 0.00000000 217.09708467 184.00121613
+Rotation angle (degrees) 179.23883581
+Shift along axis -1.40241930
+> rename #18 FlaA1_sheath_model
+> show #!59 models
+> hide #!59 models
+> rename #18 id #61
+> split #61
+Split FlaA1_sheath_model (#61) into 24 models
+Chain information for FlaA1_sheath_model A #61.1
+---
+Chain | Description
+A | No description available
+Chain information for FlaA1_sheath_model B #61.2
+---
+Chain | Description
+B | No description available
+Chain information for FlaA1_sheath_model C #61.3
+---
+Chain | Description
+C | No description available
+Chain information for FlaA1_sheath_model D #61.4
+---
+Chain | Description
+D | No description available
+Chain information for FlaA1_sheath_model E #61.5
+---
+Chain | Description
+E | No description available
+Chain information for FlaA1_sheath_model G #61.6
+---
+Chain | Description
+G | No description available
+Chain information for FlaA1_sheath_model H #61.7
+---
+Chain | Description
+H | No description available
+Chain information for FlaA1_sheath_model Q #61.8
+---
+Chain | Description
+Q | No description available
+Chain information for FlaA1_sheath_model R #61.9
+---
+Chain | Description
+R | No description available
+Chain information for FlaA1_sheath_model S #61.10
+---
+Chain | Description
+S | No description available
+Chain information for FlaA1_sheath_model T #61.11
+---
+Chain | Description
+T | No description available
+Chain information for FlaA1_sheath_model U #61.12
+---
+Chain | Description
+U | No description available
+Chain information for FlaA1_sheath_model V #61.13
+---
+Chain | Description
+V | No description available
+Chain information for FlaA1_sheath_model W #61.14
+---
+Chain | Description
+W | No description available
+Chain information for FlaA1_sheath_model X #61.15
+---
+Chain | Description
+X | No description available
+Chain information for FlaA1_sheath_model Y #61.16
+---
+Chain | Description
+Y | No description available
+Chain information for FlaA1_sheath_model Z #61.17
+---
+Chain | Description
+Z | No description available
+Chain information for FlaA1_sheath_model a #61.18
+---
+Chain | Description
+a | No description available
+Chain information for FlaA1_sheath_model b #61.19
+---
+Chain | Description
+b | No description available
+Chain information for FlaA1_sheath_model c #61.20
+---
+Chain | Description
+c | No description available
+Chain information for FlaA1_sheath_model d #61.21
+---
+Chain | Description
+d | No description available
+Chain information for FlaA1_sheath_model e #61.22
+---
+Chain | Description
+e | No description available
+Chain information for FlaA1_sheath_model f #61.23
+---
+Chain | Description
+f | No description available
+Chain information for FlaA1_sheath_model g #61.24
+---
+Chain | Description
+g | No description available
+> combine #61
+> hide #!61 models
+> rename #18 FlaA1_sheath_model
+> rename #18 FlaA1_sheath_sym_part
+> rename #61 FlaA1_sheath_sym_part
+> close #7
+> rename #61 id #7
+> rename #18 id #61
+> show #!14 models
+> hide #!14 models
+> hide #61 models
+> show #!8 models
+> hide #!8 models
+> show #!7 models
+> show #3 models
+> hide #3 models
+> show #!4 models
+> hide #!4 models
+> color #7 #a9fab5ff models
+> show #!59 models
+> hide
+> #7.1-24#59.1-2,4-8,10-11,13,15-17,19-26,28-29,31,33#!55.1-5#!56.1-5#!57.1-5#!59.3,9,12,14,18,27,30,32
+> atoms
+> select add #59
+atoms, 88077 bonds, 10824 residues, 34 models selected
+> ui mousemode right "translate selected models"
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #59,0.21701,0.97616,0.0036612,-42.597,0.97614,-0.21697,-0.0083389,36.872,-0.0073457,0.0053834,-0.99996,380.1
+> view matrix models
+> #59,0.59424,0.80413,0.015794,-83.97,0.77813,-0.56984,-0.26419,193.11,-0.20344,0.16928,-0.96434,378.54
+> view matrix models
+> #59,0.76892,-0.62618,-0.12907,185.57,-0.63897,-0.74574,-0.18866,484.35,0.02188,0.22754,-0.97352,325.97
+> view matrix models
+> #59,0.84662,-0.5261,-0.080315,141.9,-0.52939,-0.81702,-0.22852,485.26,0.054604,0.23598,-0.97022,317.51
+> view matrix models
+> #59,0.99415,-0.10773,0.0076516,16.545,-0.10556,-0.98421,-0.14211,418.94,0.022841,0.14047,-0.98982,345.68
+> view matrix models
+> #59,-0.17857,0.98375,0.018903,29.235,0.93927,0.17616,-0.29452,24.629,-0.29307,-0.034839,-0.95546,433.18
+> view matrix models
+> #59,-0.80734,0.57862,0.1158,208.11,0.51355,0.78561,-0.34507,-1.0586,-0.29064,-0.21912,-0.93141,463.35
+> view matrix models
+> #59,-0.67541,0.73681,0.030427,168.43,0.68687,0.64358,-0.33766,-8.047,-0.26838,-0.20716,-0.94078,458.56
+> view matrix models
+> #59,-0.50701,0.86169,-0.020661,121.85,0.80916,0.46757,-0.35585,5.5706,-0.29697,-0.19714,-0.93431,460.89
+> show #!4 models
+> hide #!4 models
+> show #!6 models
+> hide #!6 models
+> show #!2 models
+> combine #59
+> show #!14 models
+> hide #!2 models
+> fitmap #18 inMap #14
+Fit molecule combination (#18) to map FlaA1_sheath_sym (#14) using 86328 atoms
+average map value = 0.2651, steps = 264
+shifted from previous position = 11.7
+rotated from previous position = 20.9 degrees
+atoms outside contour = 53279, contour level = 0.28858
+Position of combination (#18) relative to FlaA1_sheath_sym (#14) coordinates:
+Matrix rotation and translation
+.83521816 0.54991874 -0.00026439 -73.94763915
+-0.54991880 0.83521802 -0.00043092 137.51060350
+-0.00001613 0.00050530 0.99999988 23.73605824
+Axis 0.00085123 -0.00022572 -0.99999961
+Axis point 192.48114074 192.10976320 0.00000000
+Rotation angle (degrees) 33.36145449
+Shift along axis -23.83003520
+> select subtract #59
+models selected
+> hide #!59 models
+> hide #!14 models
+> show #!14 models
+> hide #!14 models
+> hide #!55 models
+> hide #!56 models
+> hide #!57 models
+> select add #18
+atoms, 88077 bonds, 10824 residues, 1 model selected
+> view matrix models
+> #18,-0.98573,0.030218,-0.16559,406.01,0.060978,0.98104,-0.18397,29.786,0.15689,-0.19144,-0.96888,377.5
+> fitmap #18 inMap #14
+Fit molecule combination (#18) to map FlaA1_sheath_sym (#14) using 86328 atoms
+average map value = 0.2718, steps = 208
+shifted from previous position = 5.49
+rotated from previous position = 14.6 degrees
+atoms outside contour = 52472, contour level = 0.28858
+Position of combination (#18) relative to FlaA1_sheath_sym (#14) coordinates:
+Matrix rotation and translation
+-0.15103636 0.98852808 -0.00050224 31.39489080
+-0.98852819 -0.15103653 -0.00025824 411.36631372
+-0.00033112 0.00045746 0.99999984 19.03310702
+Axis 0.00036201 -0.00008655 -0.99999993
+Axis point 192.34410924 192.19815797 0.00000000
+Rotation angle (degrees) 98.68699930
+Shift along axis -19.05734537
+> select subtract #18
+Nothing selected
+> rename #18 FlaA_all_sym_model
+> show #!55 models
+> show #!56 models
+> show #!57 models
+> show #18#7.1-24#!55.1-5#!56.1-5#!57.1-5 surfaces
+> show #!18#!7.1-24#!55.1-5#!56.1-5#!57.1-5 surfaces
+> hide #!55 models
+> hide #!18 models
+> hide #!7.1-24#!56.1-5#!57.1-5 surfaces
+> show #5 models
+> color #5 #a9fab5ff
+> color #5 #fff6b6ff
+> show #13 models
+> color #13 #fff6b6ff
+> hide #5 models
+> show #!55 models
+> hide #13#!7.1-24#!55.1-5#!56.1-5#!57.1-5 surfaces
+> hide #13#!7.1-24#!55.1-5#!56.1-5#!57.1-5 atoms
+> hide #!55 models
+> hide #!57 models
+> ui mousemode right select
+> select #7.4/D:311
+atoms, 8 bonds, 1 residue, 1 model selected
+> select #7.4/D:298
+atoms, 7 bonds, 1 residue, 1 model selected
+> select add #7.1/A:303
+atoms, 15 bonds, 2 residues, 3 models selected
+> select add #7.22/e:304
+atoms, 23 bonds, 3 residues, 5 models selected
+> select add #7.19/b:304
+atoms, 31 bonds, 4 residues, 7 models selected
+> select add #7.16/Y:308
+atoms, 37 bonds, 5 residues, 9 models selected
+> select add #7.13/V:304
+atoms, 45 bonds, 6 residues, 11 models selected
+> select add #7.10/S:309
+atoms, 53 bonds, 7 residues, 13 models selected
+> hide #!7.2 models
+> hide #!7.3 models
+> hide #!7.5 models
+> hide #!7.6 models
+> hide #!7.7 models
+> hide #!7.8 models
+> hide #!7.9 models
+> hide #!7.11 models
+> hide #!7.12 models
+> show #!7.9 models
+> hide #!7.9 models
+> show #!7.8 models
+> hide #!7.8 models
+> show #!7.7 models
+> hide #!7.14 models
+> hide #!7.15 models
+> hide #!7.17 models
+> hide #!7.18 models
+> hide #!7.20 models
+> hide #!7.21 models
+> hide #!7.23 models
+> hide #!7.24 models
+> select add #7
+atoms, 64056 bonds, 7872 residues, 32 models selected
+> select subtract #7
+models selected
+> show #13#!7.1,4,7,10,13,16,19,22#!56.1-5 surfaces
+> view orient
+> hide #!13#!7.1,4,7,10,13,16,19,22#!56.1-5 surfaces
+> show #!13#!7.1,4,7,10,13,16,19,22#!56.1-5 surfaces
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/3-one-
+> layer_top.png width 1625 height 1210 supersample 3 transparentBackground
+> true
+> hide #!13#!7.1,4,7,10,13,16,19,22#!56.1-5 atoms
+> show #!13#!7.1,4,7,10,13,16,19,22#!56.1-5 atoms
+> hide #!13#!7.1,4,7,10,13,16,19,22#!56.1-5 atoms
+> show #!13#!7.1,4,7,10,13,16,19,22#!56.1-5 cartoons
+> hide #!13#!7.1,4,7,10,13,16,19,22#!56.1-5 surfaces
+> interfaces #!13#!7.1,4,7,10,13,16,19,22#!56.1-5 & ~solvent
+buried areas: #13/q #13/u 1878, #13/3 #13/H 1878, #13/1 #13/w 1861, #13/b
+#13/i 1850, #13/M #13/b 1847, #13/k #13/o 1843, #7.10/S #7.7/H 1315, #7.19/b
+#7.16/Y 1313, #7.22/e #7.1/A 1305, #56.2/B #56.3/C 1112, #56.4/D #56.1/A 703,
+#13/o #13/q 640, #13/u #13/w 639, #13/H #13/M 633, #13/i #13/k 630, #13/1
+#13/3 627, #56.1/A #56.2/B 596, #7.4/D #56.5/E 487, #56.4/D #56.5/E 424, #13/b
+#56.2/B 326, #7.10/S #56.3/C 318
+> show sel atoms
+> style sel sphere
+Changed 679 atom styles
+> select clear
+> show #5 models
+> hide #5 models
+> show #!57 models
+> select clear
+> interfaces #!13#!7.1,4,7,10,13,16,19,22#!56.1-5#!57.1-5 & ~solvent
+buried areas: #13/q #13/u 1878, #13/3 #13/H 1878, #13/1 #13/w 1861, #13/b
+#13/i 1850, #13/M #13/b 1847, #13/k #13/o 1843, #7.10/S #7.7/H 1315, #7.19/b
+#7.16/Y 1313, #7.22/e #7.1/A 1305, #57.2/B #57.3/C 1112, #56.2/B #56.3/C 1112,
+#57.3/C #56.3/C 806, #56.2/B #57.2/B 797, #56.4/D #56.1/A 703, #57.4/D #57.1/A
+, #13/o #13/q 640, #13/u #13/w 639, #13/H #13/M 633, #13/i #13/k 630, #13/1
+#13/3 627, #56.1/A #57.1/A 626, #56.5/E #57.5/E 623, #56.1/A #56.2/B 596,
+#57.1/A #57.2/B 596, #56.4/D #57.4/D 559, #7.4/D #56.5/E 487, #57.4/D #56.5/E
+, #56.4/D #56.5/E 424, #57.4/D #57.5/E 424, #13/b #56.2/B 326, #7.10/S
+#56.3/C 318
+> hide #!13 models
+> show #!13 models
+> hide #13.1-11 target m
+> show #13.1-11 target m
+> select add #13
+atoms, 24145 bonds, 3146 residues, 1 model selected
+> show sel cartoons
+> select subtract #13
+models selected
+> select add #7
+atoms, 64056 bonds, 7872 residues, 25 models selected
+> show sel & #!7.1,4,7,10,13,16,19,22 cartoons
+> show #!55 models
+> select add #55
+atoms, 72308 bonds, 8868 residues, 55 models selected
+> select add #56
+atoms, 80560 bonds, 9864 residues, 66 models selected
+> select add #57
+atoms, 88812 bonds, 10860 residues, 77 models selected
+> show sel & #!7.1,4,7,10,13,16,19,22#!55.1-5#!56.1-5#!57.1-5 cartoons
+> select subtract #55
+atoms, 80560 bonds, 9864 residues, 76 models selected
+> select subtract #56
+atoms, 72308 bonds, 8868 residues, 65 models selected
+> select subtract #57
+atoms, 64056 bonds, 7872 residues, 54 models selected
+> select subtract #7
+models selected
+> hide #!55 models
+> interfaces #!13#!7.1,4,7,10,13,16,19,22#!56.1-5#!57.1-5 & ~solvent
+buried areas: #13/q #13/u 1878, #13/3 #13/H 1878, #13/1 #13/w 1861, #13/b
+#13/i 1850, #13/M #13/b 1847, #13/k #13/o 1843, #7.10/S #7.7/H 1315, #7.19/b
+#7.16/Y 1313, #7.22/e #7.1/A 1305, #57.2/B #57.3/C 1112, #56.2/B #56.3/C 1112,
+#57.3/C #56.3/C 806, #56.2/B #57.2/B 797, #56.4/D #56.1/A 703, #57.4/D #57.1/A
+, #13/o #13/q 640, #13/u #13/w 639, #13/H #13/M 633, #13/i #13/k 630, #13/1
+#13/3 627, #56.1/A #57.1/A 626, #56.5/E #57.5/E 623, #56.1/A #56.2/B 596,
+#57.1/A #57.2/B 596, #56.4/D #57.4/D 559, #7.4/D #56.5/E 487, #57.4/D #56.5/E
+, #56.4/D #56.5/E 424, #57.4/D #57.5/E 424, #13/b #56.2/B 326, #7.10/S
+#56.3/C 318
+> select clear
+> select add #56.1
+atoms, 1676 bonds, 885 residues, 8 models selected
+> select subtract #56.1
+atoms, 688 residues, 7 models selected
+> hide #!56.1 models
+> hide #!56.4 models
+> show #!56.4 models
+> hide #!56.4 models
+> show #!56.4 models
+> hide #!56.5 models
+> show #!56.5 models
+> hide #!57.2 models
+> hide #!56.3 models
+> select clear
+> ui tool show Contacts
+> contacts distanceOnly 4.0 ignoreHiddenModels true
+distances
+> select #56.2/B:158
+atoms, 8 bonds, 1 residue, 1 model selected
+> select add #13/b:144
+atoms, 14 bonds, 1 pseudobond, 2 residues, 4 models selected
+> select subtract #13/b:144
+atoms, 8 bonds, 1 residue, 3 models selected
+> select clear
+> select add #56.2/B:158
+atoms, 8 bonds, 1 residue, 1 model selected
+> select add #13/b:144
+atoms, 14 bonds, 2 residues, 3 models selected
+> show sel atoms
+> style sel stick
+Changed 16 atom styles
+> hide sel cartoons
+> select #56.2/B:157
+atoms, 11 bonds, 1 residue, 1 model selected
+> select clear
+> select add #56.2/B:159
+atoms, 7 bonds, 1 residue, 1 model selected
+> select add #56.2/B:157
+atoms, 18 bonds, 2 residues, 2 models selected
+> select #13/b:208
+atoms, 8 bonds, 1 residue, 1 model selected
+> select clear
+> select #56.2/B:159
+atoms, 7 bonds, 1 residue, 1 model selected
+> select add #56.2/B:157
+atoms, 18 bonds, 2 residues, 2 models selected
+> select add #56.2/B:158@CA
+atoms, 18 bonds, 3 residues, 2 models selected
+> select clear
+> select #56.2/B:158@N
+atom, 1 residue, 1 model selected
+> select clear
+> select #56.2/B:157
+atoms, 11 bonds, 1 residue, 1 model selected
+> select add #56.2/B:159
+atoms, 18 bonds, 2 residues, 2 models selected
+> hide sel cartoons
+> show sel atoms
+> style sel stick
+Changed 19 atom styles
+> select clear
+> select #56.2/B:159@CA
+atom, 1 residue, 1 model selected
+> select add #56.2
+atoms, 1653 bonds, 1722 pseudobonds, 200 residues, 3 models selected
+> show sel cartoons
+> hide sel atoms
+> select clear
+> select #13/b:144@O
+atom, 1 residue, 1 model selected
+> select #13/b:143
+atoms, 8 bonds, 1 residue, 1 model selected
+> select subtract #13.5
+model selected
+> select add #13.5
+atoms, 286 residues, 1 model selected
+> show sel cartoons
+> hide sel atoms
+> select clear
+> select #56.2/B:158
+atoms, 8 bonds, 1 residue, 1 model selected
+> select add #56.2/B:159
+atoms, 15 bonds, 2 residues, 2 models selected
+> select add #56.2/B:157
+atoms, 26 bonds, 3 residues, 2 models selected
+> hide (#!56.2 & sel-residues & (protein|nucleic)) target a
+> cartoon hide (#!56.2 & sel-residues)
+> show (#!56.2 & sel-residues & backbone) target ab
+> select #13/b:144
+atoms, 6 bonds, 1 residue, 1 model selected
+> select add #13/b:145
+atoms, 9 bonds, 2 residues, 2 models selected
+> hide (#!13 & sel-residues & (protein|nucleic)) target a
+> cartoon hide (#!13 & sel-residues)
+> show (#!13 & sel-residues & backbone) target ab
+> select add #13/b:146
+atoms, 17 bonds, 3 residues, 2 models selected
+> hide (#!13 & sel-residues & (protein|nucleic)) target a
+> cartoon hide (#!13 & sel-residues)
+> show (#!13 & sel-residues & backbone) target ab
+> select clear
+> hide #19 models
+> show #19 models
+> select #56.2/B:158@O
+atom, 1 residue, 1 model selected
+> select clear
+> select #13/b:144@C
+atom, 1 residue, 1 model selected
+> select clear
+> select #13/b:149
+atoms, 6 bonds, 1 residue, 1 model selected
+> select subtract #13.5
+model selected
+> select add #13.5
+atoms, 286 residues, 1 model selected
+> select add #56.2
+atoms, 1653 bonds, 1722 pseudobonds, 486 residues, 4 models selected
+Alignment identifier is 56.2/B
+Alignment identifier is 13/b
+> select clear
+> select #13/b:144@C
+atom, 1 residue, 1 model selected
+> select #13/b:144
+atoms, 6 bonds, 1 residue, 1 model selected
+> select add #56.2/B:158@C
+atoms, 6 bonds, 2 residues, 3 models selected
+> select #56.2/B:158
+atoms, 8 bonds, 1 residue, 1 model selected
+> select #56.2/B:158
+atoms, 8 bonds, 1 residue, 1 model selected
+> select #13/b:137
+atoms, 6 bonds, 1 residue, 1 model selected
+> select #13/b:166
+atoms, 10 bonds, 1 residue, 1 model selected
+> select clear
+> select #13/b:144@C
+atom, 1 residue, 1 model selected
+> select #13/b:144
+atoms, 6 bonds, 1 residue, 1 model selected
+> select #13/b:144
+atoms, 6 bonds, 1 residue, 1 model selected
+> show sel atoms
+> hide sel atoms
+> show sel cartoons
+> hide (#!13 & sel-residues & (protein|nucleic)) target a
+> cartoon hide (#!13 & sel-residues)
+> show (#!13 & sel-residues & backbone) target ab
+> style sel ball
+Changed 7 atom styles
+> select #13/b:145
+atoms, 3 bonds, 1 residue, 1 model selected
+> select #13/b:144-145
+atoms, 10 bonds, 2 residues, 1 model selected
+> style sel ball
+Changed 11 atom styles
+> color (#!13 & sel) byhetero
+> select clear
+> select #56.2/B:157@C
+atom, 1 residue, 1 model selected
+> select #56.2/B:156
+atoms, 10 bonds, 1 residue, 1 model selected
+> select #56.2/B:156-158
+atoms, 31 bonds, 3 pseudobonds, 3 residues, 2 models selected
+> select #56.2/B:159
+atoms, 7 bonds, 1 residue, 1 model selected
+> select #56.2/B:157-159
+atoms, 28 bonds, 3 residues, 1 model selected
+> style sel ball
+Changed 28 atom styles
+> color (#!56.2 & sel) byhetero
+> select ~sel & ##selected
+pseudobonds, 1 model selected
+> select clear
+> hide #19 models
+> show #19 models
+> select add #19
+pseudobonds, 1 model selected
+> hide #19 target m
+> show #19 target m
+> split #19
+> select clear
+> hide #19 target m
+> show #19 models
+> select add #19
+pseudobonds, 1 model selected
+> select subtract #19
+Nothing selected
+> select #56.2/B:158
+atoms, 8 bonds, 1 residue, 1 model selected
+> select #56.2/B:158-159
+atoms, 16 bonds, 2 residues, 1 model selected
+> select
+> #56.2/B:47-53,61-65,70-78,99-107,114-119,128-137,144-150,156-163,169-175,201-208,217-223,225-230
+atoms, 744 bonds, 709 pseudobonds, 89 residues, 2 models selected
+> select add #19
+atoms, 744 bonds, 82884 pseudobonds, 89 residues, 3 models selected
+> select subtract #19
+atoms, 744 bonds, 89 residues, 2 models selected
+> hide #19 models
+> select clear
+> hbonds #!13#!7.1,4,7,10,13,16,19,22#!56.2,4-5#!57.1,3-5 reveal true
+hydrogen bonds found
+> hide #!13#!7.1,4,7,10,13,16,19,22#!56.2,4-5#!57.1,3-5 atoms
+> select add #56.2
+atoms, 1653 bonds, 1856 pseudobonds, 200 residues, 3 models selected
+> show sel cartoons
+> select #13/b:81
+atoms, 8 bonds, 1 residue, 1 model selected
+> select subtract #13.5
+model selected
+> select add #13.5
+atoms, 286 residues, 1 model selected
+> show sel cartoons
+> select clear
+> interfaces #!13#!7.1,4,7,10,13,16,19,22#!56.2,4-5#!57.1,3-5 & ~solvent
+buried areas: #13/q #13/u 1878, #13/3 #13/H 1878, #13/1 #13/w 1861, #13/b
+#13/i 1850, #13/M #13/b 1847, #13/k #13/o 1843, #7.10/S #7.7/H 1315, #7.19/b
+#7.16/Y 1313, #7.22/e #7.1/A 1305, #57.4/D #57.1/A 703, #13/o #13/q 640, #13/u
+#13/w 639, #13/H #13/M 633, #13/i #13/k 630, #13/1 #13/3 627, #56.5/E #57.5/E
+, #56.4/D #57.4/D 559, #7.4/D #56.5/E 487, #57.4/D #56.5/E 447, #56.4/D
+#56.5/E 424, #57.4/D #57.5/E 424, #13/b #56.2/B 326
+Alignment identifier is 1
+Alignment identifier is 2
+Alignment identifier is 3
+Alignment identifier is 4
+Alignment identifier is 5
+Alignment identifier is 6
+Alignment identifier is 7
+Alignment identifier is 8
+> select #13/b:212
+atoms, 8 bonds, 1 residue, 1 model selected
+> select subtract #13.5
+model selected
+> select add #13.5
+atoms, 286 residues, 1 model selected
+> select add #56.2
+atoms, 1653 bonds, 1856 pseudobonds, 486 residues, 5 models selected
+Alignment identifier is 56.2/B
+Alignment identifier is 13/b
+> select clear
+> hbonds #!13#!7.1,4,7,10,13,16,19,22#!56.2,4-5#!57.1,3-5 reveal true
+hydrogen bonds found
+> hide #!13#!7.1,4,7,10,13,16,19,22#!56.2,4-5#!57.1,3-5 atoms
+> show #19 models
+> select #56.2/B:158
+atoms, 8 bonds, 1 residue, 1 model selected
+> show sel atoms
+> select #56.2/B:159
+atoms, 7 bonds, 1 residue, 1 model selected
+> select #56.2/B:158
+atoms, 8 bonds, 1 residue, 1 model selected
+> hide sel atoms
+> select #56.2/B:159
+atoms, 7 bonds, 1 residue, 1 model selected
+> select add #56.2/B:158
+atoms, 15 bonds, 2 residues, 2 models selected
+> select add #56.2/B:157
+atoms, 26 bonds, 3 residues, 2 models selected
+> hide (#!56.2 & sel-residues & (protein|nucleic)) target a
+> cartoon hide (#!56.2 & sel-residues)
+> show (#!56.2 & sel-residues & backbone) target ab
+> show sel atoms
+> select #13/b:144
+atoms, 6 bonds, 1 residue, 1 model selected
+> select add #13/b:145
+atoms, 9 bonds, 2 residues, 2 models selected
+> hide (#!13 & sel-residues & (protein|nucleic)) target a
+> cartoon hide (#!13 & sel-residues)
+> show (#!13 & sel-residues & backbone) target ab
+> show sel atoms
+> select #56.2/B:158@C
+atom, 1 residue, 1 model selected
+> select #56.2/B:158
+atoms, 8 bonds, 1 residue, 1 model selected
+> select #56.2/B:158
+atoms, 8 bonds, 1 residue, 1 model selected
+> ui tool show Distances
+> select #56.2/B:158
+atoms, 8 bonds, 1 residue, 1 model selected
+> select #56.2/B:158
+atoms, 8 bonds, 1 residue, 1 model selected
+Exactly two atoms must be selected!
+> select #56.2/B:158@CA
+atom, 1 residue, 1 model selected
+> select #13/b:144@O
+atom, 1 residue, 1 model selected
+> select add #56.2/B:158@O
+atoms, 2 residues, 3 models selected
+> select add #56.2/B:158@N
+atoms, 2 residues, 4 models selected
+Exactly two atoms must be selected!
+> select subtract #56.2/B:158@N
+atoms, 2 residues, 4 models selected
+> distance #13/b:144@O #56.2/B:158@O
+Distance between core_one_layer #13/b THR 144 O and Asym_part_2 B #56.2/B GLU
+O: 3.188Å
+> select subtract #56.2/B:158@O
+atom, 1 residue, 3 models selected
+> select add #56.2/B:158@N
+atoms, 2 residues, 3 models selected
+> distance #13/b:144@O #56.2/B:158@N
+Distance between core_one_layer #13/b THR 144 O and Asym_part_2 B #56.2/B GLU
+N: 3.561Å
+> hide #19 models
+> hide #20 models
+> select clear
+> select #13/b:146
+atoms, 8 bonds, 1 pseudobond, 1 residue, 2 models selected
+> hide (#!13 & sel-residues & (protein|nucleic)) target a
+> cartoon hide (#!13 & sel-residues)
+> show (#!13 & sel-residues & backbone) target ab
+> select #13/b:147
+atoms, 7 bonds, 1 residue, 1 model selected
+> hide (#!13 & sel-residues & (protein|nucleic)) target a
+> cartoon hide (#!13 & sel-residues)
+> show (#!13 & sel-residues & backbone) target ab
+> style sel ball
+Changed 8 atom styles
+> select #13/b:146@C
+atom, 1 residue, 1 model selected
+> select #13/b:146
+atoms, 8 bonds, 1 pseudobond, 1 residue, 2 models selected
+> select #13/b:146-149
+atoms, 30 bonds, 9 pseudobonds, 4 residues, 3 models selected
+> hide (#!13 & sel-residues & (protein|nucleic)) target a
+> cartoon hide (#!13 & sel-residues)
+> show (#!13 & sel-residues & backbone) target ab
+> style sel ball
+Changed 31 atom styles
+> color (#!13 & sel) byhetero
+> color (#!13 & sel) #fff6b6ff
+> select #13/b:145
+atoms, 3 bonds, 1 residue, 1 model selected
+> select #13/b:142-145
+atoms, 30 bonds, 6 pseudobonds, 4 residues, 3 models selected
+> hide (#!13 & sel-residues & (protein|nucleic)) target a
+> cartoon hide (#!13 & sel-residues)
+> show (#!13 & sel-residues & backbone) target ab
+> style sel ball
+Changed 31 atom styles
+> select clear
+> select #56.2/B:156
+atoms, 10 bonds, 1 residue, 1 model selected
+> select #56.2/B:156-159
+atoms, 39 bonds, 3 pseudobonds, 4 residues, 2 models selected
+> select #56.2/B:157
+atoms, 11 bonds, 1 residue, 1 model selected
+> select #56.2/B:157-161
+atoms, 48 bonds, 5 pseudobonds, 5 residues, 2 models selected
+> select #56.2/B:157
+atoms, 11 bonds, 1 residue, 1 model selected
+> select #56.2/B:157-160
+atoms, 41 bonds, 1 pseudobond, 4 residues, 2 models selected
+> select #56.2/B:157
+atoms, 11 bonds, 1 residue, 1 model selected
+> select #56.2/B:157-159
+atoms, 28 bonds, 3 residues, 1 model selected
+> hide (#!56.2 & sel-residues & (protein|nucleic)) target a
+> cartoon hide (#!56.2 & sel-residues)
+> show (#!56.2 & sel-residues & backbone) target ab
+> style sel ball
+Changed 28 atom styles
+> select clear
+> select #56.2/B:157
+atoms, 11 bonds, 1 residue, 1 model selected
+> select #56.2/B:157-159
+atoms, 28 bonds, 3 residues, 1 model selected
+> hide (#!56.2 & sel-residues & (protein|nucleic)) target a
+> cartoon hide (#!56.2 & sel-residues)
+> show (#!56.2 & sel-residues & backbone) target ab
+> style sel ball
+Changed 28 atom styles
+> select #56.2/B:159@CA
+atom, 1 residue, 1 model selected
+> select #56.2/B:159
+atoms, 7 bonds, 1 residue, 1 model selected
+> select #56.2/B:159
+atoms, 7 bonds, 1 residue, 1 model selected
+> color (#!56.2 & sel) #ff97f2ff
+> color (#!56.2 & sel) #76609fff
+> select clear
+> select #56.2/B:157
+atoms, 11 bonds, 1 residue, 1 model selected
+> select add #56.2/B:158
+atoms, 19 bonds, 2 residues, 2 models selected
+> select add #56.2/B:159
+atoms, 26 bonds, 3 residues, 2 models selected
+> hide (#!56.2 & sel-residues & (protein|nucleic)) target a
+> cartoon hide (#!56.2 & sel-residues)
+> show (#!56.2 & sel-residues & backbone) target ab
+> select #13/b:144
+atoms, 6 bonds, 1 residue, 1 model selected
+> select #13/b:142
+atoms, 10 bonds, 1 residue, 1 model selected
+> select #13/b:142-145
+atoms, 30 bonds, 6 pseudobonds, 4 residues, 3 models selected
+> select #13/b:142-146
+atoms, 39 bonds, 20 pseudobonds, 5 residues, 3 models selected
+> select #13/b:142-148
+atoms, 54 bonds, 35 pseudobonds, 7 residues, 3 models selected
+> hide (#!13 & sel-residues & (protein|nucleic)) target a
+> cartoon hide (#!13 & sel-residues)
+> show (#!13 & sel-residues & backbone) target ab
+> select clear
+> color #21 #3587b7ff models
+> select clear
+> label height 1
+> select add #21.1
+model selected
+> ui mousemode right "translate selected models"
+> view matrix models #21.1,1,0,0,0.82189,0,1,0,-1.1496,0,0,1,-1.5395
+> view matrix models
+> #21.1,0.99998,0.0028934,-0.0048498,1.4204,-0.0028967,1,-0.000677,-0.62005,0.0048478,0.00069104,0.99999,-2.2849
+> view matrix models
+> #21.1,0.99998,0.0028934,-0.0048498,0.18169,-0.0028967,1,-0.000677,-0.025843,0.0048478,0.00069104,0.99999,-0.4327
+> select subtract #21.1
+Nothing selected
+> select add #21.1
+model selected
+> split #21.1
+> view matrix models
+> #21.1,0.99998,0.0028934,-0.0048498,1.2847,-0.0028967,1,-0.000677,-1.6225,0.0048478,0.00069104,0.99999,-2.5209
+> view matrix models
+> #21.1,0.99998,0.0028934,-0.0048498,0.41088,-0.0028967,1,-0.000677,-0.68711,0.0048478,0.00069104,0.99999,-1.0021
+> select subtract #21.1
+Nothing selected
+> hide #21.1 models
+> select #56.2/B:158
+atoms, 8 bonds, 1 residue, 1 model selected
+> view matrix models
+> #56.2,0.85836,0.51286,-0.013572,-69.545,-0.51293,0.85843,-0.0015432,126.11,0.010859,0.0082861,0.99991,-30.671
+> ui mousemode right select
+> select clear
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/4-FlaB1_FlaA3_inter.png
+> width 1625 height 1210 supersample 3 transparentBackground true
+> select #56.2/B:158@N
+atom, 1 residue, 1 model selected
+> select #56.2/B:158
+atoms, 8 bonds, 1 residue, 1 model selected
+> select #56.2/B:158
+atoms, 8 bonds, 1 residue, 1 model selected
+> select #13/b:144@C
+atom, 1 residue, 1 model selected
+> select #13/b:144
+atoms, 6 bonds, 1 residue, 1 model selected
+> select #13/b:144
+atoms, 6 bonds, 1 residue, 1 model selected
+> show #21.1 models
+> hide #21.1 models
+> select clear
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/4-FlaB1_FlaA3_complex.png
+> width 1625 height 1210 supersample 3 transparentBackground true
+> show #!57.2 models
+> show #!56.3 models
+> show #!56.1 models
+> show #!60 models
+> show #60.1.12 models
+> hide #60.1.12 models
+> show #60.1.15 models
+> hide #60.1.15 models
+> show #60.1.6 models
+> hide #60.1.6 models
+> show
+> #60.1.1-3,6,12,15-32#60.2.1-6,8-11,13-14,16-32#!60.2#!60.1.4-5,7-11,13-14,33#!60.2.7,12,15,33
+> target m
+> hide
+> #60.1.1-3,6,12,15-32#60.2.1-6,8-11,13-14,16-32#!60.2#!60.1.4-5,7-11,13-14,33#!60.2.7,12,15,33
+> target m
+> show #!60.3 models
+> show
+> #60.1.1-3,6,12,15-32#60.2.1-6,8-11,13-14,16-32#!60.2#!60.1.4-5,7-11,13-14,33#!60.2.7,12,15,33
+> target m
+> select #60.1.7/H:199
+atoms, 5 bonds, 1 residue, 1 model selected
+> select add #60.1.7
+atoms, 2195 bonds, 286 residues, 2 models selected
+> hide #60.1.1-3,6#!60.1.4-5 target m
+> hide #60.1.12,15-32#!60.1.8-11,13-14,33 target m
+> hide #!60.2 models
+> hide #!60.3 models
+> hide sel atoms
+> show sel cartoons
+> color #60.1.7 #fff6b6ff
+> color #60.1.7 #ffdb8eff
+> color #60.1.7 #fff6b6ff
+> select clear
+> show #5 models
+> hide #5 models
+> show #5 models
+> hide #5#!13#!7.1,4,7,10,13,16,19,22#!56.1-5#!57.1-5#!60.1.7 atoms
+> show #5#!13#!7.1,4,7,10,13,16,19,22#!56.1-5#!57.1-5#!60.1.7 cartoons
+> hide #!7 models
+> hide #!13 models
+> show #!13 models
+> color #13 red
+> hide #!56 models
+> hide #!57 models
+> select #5/I:215
+atoms, 4 bonds, 1 residue, 1 model selected
+> select add #5/F:202
+atoms, 10 bonds, 2 residues, 1 model selected
+> select add #5/n:209
+atoms, 18 bonds, 3 residues, 1 model selected
+> select add #5/f:220
+atoms, 30 bonds, 4 residues, 1 model selected
+> select add #5/0:220
+atoms, 42 bonds, 5 residues, 1 model selected
+> select add #5/Z:212
+atoms, 50 bonds, 6 residues, 1 model selected
+> select add #5/4:220
+atoms, 62 bonds, 7 residues, 1 model selected
+> select add #5/T:212
+atoms, 70 bonds, 8 residues, 1 model selected
+> select add #5/x:220
+atoms, 82 bonds, 9 residues, 1 model selected
+> select add #5/N:216
+atoms, 89 bonds, 10 residues, 1 model selected
+> select add #5/K:216
+atoms, 96 bonds, 11 residues, 1 model selected
+> hide #5 models
+> select add #5
+atoms, 217305 bonds, 28314 residues, 1 model selected
+> select subtract #5
+Nothing selected
+> hide #!60 models
+> show #!60 models
+> hide #!60 models
+> show #60.1.1-3,6,12,15-32#!60.1.4-5,7-11,13-14,33 target m
+> hide #60.1.1-3,6,12,15-32#!13#!60.1.4-5,7-11,13-14,33 surfaces
+> show #60.1.1-3,6,12,15-32#!13#!60.1.4-5,7-11,13-14,33 cartoons
+> hide #60.1.1-3,6,12,15-32#!13#!60.1.4-5,7-11,13-14,33 atoms
+> show #!60.2 models
+> hide
+> #60.1.1-3,6,12,15-32#60.2.1-6,8-11,13-14,16-32#!13#!60.1.4-5,7-11,13-14,33#!60.2.7,12,15,33
+> surfaces
+> show
+> #60.1.1-3,6,12,15-32#60.2.1-6,8-11,13-14,16-32#!13#!60.1.4-5,7-11,13-14,33#!60.2.7,12,15,33
+> cartoons
+> hide
+> #60.1.1-3,6,12,15-32#60.2.1-6,8-11,13-14,16-32#!13#!60.1.4-5,7-11,13-14,33#!60.2.7,12,15,33
+> atoms
+> color #60.2 #ffdb8eff models
+> select add #13
+atoms, 24145 bonds, 42023 pseudobonds, 3146 residues, 3 models selected
+> show sel surfaces
+> select clear
+> select #60.1.31/f:213
+atoms, 8 bonds, 1 residue, 1 model selected
+> select add #60.2.28/c:220
+atoms, 20 bonds, 2 residues, 2 models selected
+> select add #60.1.25/Z:213
+atoms, 28 bonds, 3 residues, 3 models selected
+> select add #60.2.22/W:216
+atoms, 35 bonds, 4 residues, 4 models selected
+> select add #60.1.19/T:209
+atoms, 43 bonds, 5 residues, 5 models selected
+> select add #60.2.16/Q:216
+atoms, 50 bonds, 6 residues, 6 models selected
+> select add #60.1.13/N:202
+atoms, 56 bonds, 7 residues, 7 models selected
+> select add #60.1.10/K:212
+atoms, 64 bonds, 8 residues, 9 models selected
+> select add #60.1.8/I:205
+atoms, 72 bonds, 9 residues, 11 models selected
+> select add #60.1.5/F:209
+atoms, 80 bonds, 10 residues, 13 models selected
+> select add #60.2.6/G:209
+atoms, 88 bonds, 11 residues, 15 models selected
+> select add #60.1.5
+atoms, 2275 bonds, 296 residues, 15 models selected
+> select add #60.1.8
+atoms, 4462 bonds, 581 residues, 15 models selected
+> select add #60.1.10
+atoms, 6649 bonds, 866 residues, 15 models selected
+> select add #60.1.13
+atoms, 8838 bonds, 1151 residues, 15 models selected
+> select add #60.1.19
+atoms, 11025 bonds, 1436 residues, 15 models selected
+> select add #60.1.25
+atoms, 13212 bonds, 1721 residues, 15 models selected
+> select add #60.1.31
+atoms, 15399 bonds, 2006 residues, 15 models selected
+> select add #60.2
+atoms, 87800 bonds, 11440 residues, 45 models selected
+> select subtract #60.2
+atoms, 15365 bonds, 2002 residues, 15 models selected
+> select add #60.2.6/G:213
+atoms, 15373 bonds, 2003 residues, 12 models selected
+> select add #60.2.28/c:212
+atoms, 15381 bonds, 2004 residues, 13 models selected
+> select add #60.2.22/W:213
+atoms, 15389 bonds, 2005 residues, 14 models selected
+> select add #60.2.16/Q:209
+atoms, 15397 bonds, 2006 residues, 15 models selected
+> select add #60.2.6
+atoms, 17584 bonds, 2291 residues, 15 models selected
+> select add #60.2.16
+atoms, 19771 bonds, 2576 residues, 15 models selected
+> select add #60.2.22
+atoms, 21958 bonds, 2861 residues, 15 models selected
+> select add #60.2.28
+atoms, 24145 bonds, 3146 residues, 15 models selected
+> hide #60.1.1-3#!60.1.4 target m
+> hide #60.1.6#!60.1.7 target m
+> hide #!60.1.9 models
+> hide #60.1.12#!60.1.11 target m
+> hide #60.1.15-18#!60.1.14 target m
+> hide #60.1.20-24 target m
+> hide #60.1.26-30 target m
+> hide #60.1.32 models
+> hide #!60.1.33 models
+> hide #60.2.1-5 target m
+> hide #60.2.8-11,13-14#!60.2.7,12,15 target m
+> hide #60.2.17-21 target m
+> hide #60.2.23-27 target m
+> hide #60.2.29-32#!60.2.33 target m
+> hide #!13 models
+> hide #!21 models
+> select clear
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/FlaB1_core_one-
+> layer-2.pdb displayedOnly true
+> show #!13 models
+> hide #!60 models
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/FlaB1_core_one-
+> layer-1.pdb displayedOnly true
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/FlaB1_core_one-
+> layer-2.pdb
+Summary of feedback from opening
+/Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/FlaB1_core_one-
+layer-2.pdb
+---
+warnings | Start residue of secondary structure not found: HELIX 1 1 TYR A 223 ASP A 227 1 5
+End residue of secondary structure not found: HELIX 17 17 GLN C 231 LYS C 233
+3
+Start residue of secondary structure not found: HELIX 18 18 TYR D 223 ASP D
+1 5
+Start residue of secondary structure not found: HELIX 19 19 PRO E 88 GLU E 90
+3
+Start residue of secondary structure not found: HELIX 20 20 TYR E 232 ASP E
+1 4
+Start residue of secondary structure not found: HELIX 21 21 TYR F 223 ASP F
+1 5
+Start residue of secondary structure not found: HELIX 24 24 VAL H 33 LEU H 51
+19
+messages similar to the above omitted
+End residue of secondary structure not found: HELIX 33 33 SER H 176 LEU H 189
+14
+Start residue of secondary structure not found: HELIX 34 34 ALA H 190 THR H
+1 3
+Start residue of secondary structure not found: HELIX 35 35 LYS H 196 ASN H
+1 13
+End residue of secondary structure not found: HELIX 36 36 THR H 214 GLY H 230
+17
+End residue of secondary structure not found: HELIX 37 37 GLN H 231 LYS H 233
+3
+Start residue of secondary structure not found: HELIX 42 42 PRO L 88 GLU L 90
+3
+Start residue of secondary structure not found: HELIX 43 43 TYR L 232 ASP L
+1 4
+End residue of secondary structure not found: HELIX 57 57 GLN M 231 LYS M 233
+3
+Start residue of secondary structure not found: HELIX 61 61 TYR P 223 ASP P
+1 5
+Start residue of secondary structure not found: HELIX 62 62 PRO Q 88 GLU Q 90
+3
+Start residue of secondary structure not found: HELIX 63 63 TYR Q 232 ASP Q
+1 4
+Start residue of secondary structure not found: HELIX 64 64 VAL R 33 LEU R 51
+19
+Start residue of secondary structure not found: HELIX 65 65 ARG R 55 GLU R 70
+16
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 8 8 1 THR A 147 TYR A 154
+Start residue of secondary structure not found: SHEET 9 9 1 LYS A 158 THR A
+0
+Start residue of secondary structure not found: SHEET 10 10 1 THR A 185 THR A
+0
+Start residue of secondary structure not found: SHEET 11 11 1 PHE A 202 ASP A
+0
+Start residue of secondary structure not found: SHEET 12 12 1 PHE A 209 ASP A
+0
+Start residue of secondary structure not found: SHEET 13 13 1 ILE B 47 GLU B
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 15 15 1 GLY B 70 ASN B 78
+Start residue of secondary structure not found: SHEET 20 20 1 ARG B 156 LYS B
+0
+Start residue of secondary structure not found: SHEET 21 21 1 TRP B 169 ALA B
+0
+Start residue of secondary structure not found: SHEET 25 25 1 TYR D 31 ASP D
+0
+Start residue of secondary structure not found: SHEET 26 26 1 ALA D 48 GLY D
+0
+Start residue of secondary structure not found: SHEET 27 27 1 LYS D 63 ASN D
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 56 56 1 THR F 147 TYR F
+0
+Start residue of secondary structure not found: SHEET 57 57 1 LYS F 158 THR F
+0
+Start residue of secondary structure not found: SHEET 58 58 1 THR F 185 THR F
+0
+Start residue of secondary structure not found: SHEET 59 59 1 PHE F 202 ASP F
+0
+Start residue of secondary structure not found: SHEET 60 60 1 PHE F 209 ASP F
+0
+Start residue of secondary structure not found: SHEET 61 61 1 ILE G 47 GLU G
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 63 63 1 GLY G 70 ASN G 78
+Start residue of secondary structure not found: SHEET 68 68 1 ARG G 156 LYS G
+0
+Start residue of secondary structure not found: SHEET 69 69 1 TRP G 169 ALA G
+0
+Start residue of secondary structure not found: SHEET 73 73 1 TYR I 31 ASP I
+0
+End residue of secondary structure not found: SHEET 74 74 1 ALA I 48 GLY I 53
+End residue of secondary structure not found: SHEET 75 75 1 LYS I 63 ASN I 68
+End residue of secondary structure not found: SHEET 78 78 1 ASN I 119 ALA I
+0
+End residue of secondary structure not found: SHEET 80 80 1 THR I 147 TYR I
+0
+Start residue of secondary structure not found: SHEET 81 81 1 LYS I 158 THR I
+0
+Start residue of secondary structure not found: SHEET 85 85 1 ILE J 47 GLU J
+0
+Start residue of secondary structure not found: SHEET 86 86 1 TRP J 61 MET J
+0
+End residue of secondary structure not found: SHEET 87 87 1 GLY J 70 ASN J 78
+Start residue of secondary structure not found: SHEET 92 92 1 ARG J 156 LYS J
+0
+Start residue of secondary structure not found: SHEET 93 93 1 TRP J 169 ALA J
+0
+Start residue of secondary structure not found: SHEET 97 97 1 TYR K 31 ASP K
+0
+End residue of secondary structure not found: SHEET 98 98 1 ALA K 48 GLY K 53
+End residue of secondary structure not found: SHEET 99 99 1 LYS K 63 ASN K 68
+End residue of secondary structure not found: SHEET 102 102 1 ASN K 119 ALA K
+0
+Start residue of secondary structure not found: SHEET 104 104 1 THR K 147 TYR
+K 154 0
+Start residue of secondary structure not found: SHEET 105 105 1 LYS K 158 THR
+K 166 0
+Start residue of secondary structure not found: SHEET 109 109 1 ILE L 47 GLU L
+0
+Start residue of secondary structure not found: SHEET 110 110 1 TRP L 61 MET L
+0
+Start residue of secondary structure not found: SHEET 111 111 1 GLY L 70 ASN L
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 122 122 1 ALA N 48 GLY N
+0
+End residue of secondary structure not found: SHEET 123 123 1 LYS N 63 ASN N
+0
+End residue of secondary structure not found: SHEET 126 126 1 ASN N 119 ALA N
+0
+Start residue of secondary structure not found: SHEET 128 128 1 THR N 147 TYR
+N 154 0
+Start residue of secondary structure not found: SHEET 133 133 1 ILE O 47 GLU O
+0
+Start residue of secondary structure not found: SHEET 134 134 1 TRP O 61 MET O
+0
+End residue of secondary structure not found: SHEET 135 135 1 GLY O 70 ASN O
+0
+Start residue of secondary structure not found: SHEET 140 140 1 ARG O 156 LYS
+O 163 0
+Start residue of secondary structure not found: SHEET 141 141 1 TRP O 169 ALA
+O 175 0
+Start residue of secondary structure not found: SHEET 145 145 1 TYR P 31 ASP P
+0
+Start residue of secondary structure not found: SHEET 146 146 1 ALA P 48 GLY P
+0
+Start residue of secondary structure not found: SHEET 147 147 1 LYS P 63 ASN P
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 177 177 1 LYS S 158 THR S
+0
+Start residue of secondary structure not found: SHEET 178 178 1 THR S 185 THR
+S 193 0
+Start residue of secondary structure not found: SHEET 179 179 1 PHE S 202 ASP
+S 207 0
+Start residue of secondary structure not found: SHEET 180 180 1 PHE S 209 ASP
+S 214 0
+Start residue of secondary structure not found: SHEET 181 181 1 ILE T 47 GLU T
+0
+Start residue of secondary structure not found: SHEET 182 182 1 TRP T 61 MET T
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 8 8 1 THR A 147 TYR A 154
+Start residue of secondary structure not found: SHEET 9 9 1 LYS A 158 THR A
+0
+Start residue of secondary structure not found: SHEET 10 10 1 THR A 185 THR A
+0
+Start residue of secondary structure not found: SHEET 11 11 1 PHE A 202 ASP A
+0
+Start residue of secondary structure not found: SHEET 12 12 1 PHE A 209 ASP A
+0
+Start residue of secondary structure not found: SHEET 13 13 1 ILE B 47 GLU B
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 15 15 1 GLY B 70 ASN B 78
+Start residue of secondary structure not found: SHEET 20 20 1 ARG B 156 LYS B
+0
+Start residue of secondary structure not found: SHEET 21 21 1 TRP B 169 ALA B
+0
+Start residue of secondary structure not found: SHEET 25 25 1 TYR D 31 ASP D
+0
+Start residue of secondary structure not found: SHEET 26 26 1 ALA D 48 GLY D
+0
+Start residue of secondary structure not found: SHEET 27 27 1 LYS D 63 ASN D
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 2 2 1 ALA A 48 GLY A 53 0
+End residue of secondary structure not found: SHEET 3 3 1 LYS A 63 ASN A 68 0
+End residue of secondary structure not found: SHEET 6 6 1 ASN A 119 ALA A 130
+Start residue of secondary structure not found: SHEET 8 8 1 THR A 147 TYR A
+0
+Start residue of secondary structure not found: SHEET 9 9 1 LYS A 158 THR A
+0
+Start residue of secondary structure not found: SHEET 13 13 1 ILE B 47 GLU B
+0
+Start residue of secondary structure not found: SHEET 14 14 1 TRP B 61 MET B
+0
+Start residue of secondary structure not found: SHEET 15 15 1 GLY B 70 ASN B
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 15 15 1 GLY B 70 ASN B 78
+Start residue of secondary structure not found: SHEET 20 20 1 ARG B 156 LYS B
+0
+Start residue of secondary structure not found: SHEET 21 21 1 TRP B 169 ALA B
+0
+Start residue of secondary structure not found: SHEET 25 25 1 TYR D 31 ASP D
+0
+Start residue of secondary structure not found: SHEET 26 26 1 ALA D 48 GLY D
+0
+Start residue of secondary structure not found: SHEET 27 27 1 LYS D 63 ASN D
+0
+messages similar to the above omitted
+End residue of secondary structure not found: HELIX 60 60 TYR O 232 ASP O 235
+4
+Start residue of secondary structure not found: HELIX 61 61 TYR P 223 ASP P
+1 5
+Start residue of secondary structure not found: HELIX 62 62 PRO Q 88 GLU Q 90
+3
+Start residue of secondary structure not found: HELIX 63 63 TYR Q 232 ASP Q
+1 4
+Start residue of secondary structure not found: HELIX 64 64 VAL R 33 LEU R 51
+19
+Start residue of secondary structure not found: HELIX 65 65 ARG R 55 GLU R 70
+16
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 184 184 1 LYS T 99 PHE T
+0
+Start residue of secondary structure not found: SHEET 185 185 1 SER T 114 ALA
+T 119 0
+Start residue of secondary structure not found: SHEET 186 186 1 ILE T 128 VAL
+T 137 0
+Start residue of secondary structure not found: SHEET 187 187 1 THR T 144 GLU
+T 150 0
+Start residue of secondary structure not found: SHEET 188 188 1 ARG T 156 LYS
+T 163 0
+Start residue of secondary structure not found: SHEET 189 189 1 TRP T 169 ALA
+T 175 0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 33 33 1 LYS D 158 THR D
+0
+Start residue of secondary structure not found: SHEET 34 34 1 THR D 185 THR D
+0
+Start residue of secondary structure not found: SHEET 35 35 1 PHE D 202 ASP D
+0
+Start residue of secondary structure not found: SHEET 36 36 1 PHE D 209 ASP D
+0
+Start residue of secondary structure not found: SHEET 37 37 1 ILE E 47 GLU E
+0
+Start residue of secondary structure not found: SHEET 38 38 1 TRP E 61 MET E
+0
+messages similar to the above omitted
+End residue of secondary structure not found: HELIX 3 3 TYR B 232 ASP B 235 1
+Start residue of secondary structure not found: HELIX 4 4 VAL C 33 LEU C 51 1
+Start residue of secondary structure not found: HELIX 5 5 ARG C 55 GLU C 70 1
+Start residue of secondary structure not found: HELIX 6 6 PRO C 76 SER C 84 1
+Start residue of secondary structure not found: HELIX 7 7 LEU C 85 THR C 87 1
+Start residue of secondary structure not found: HELIX 8 8 PRO C 105 VAL C 118
+14
+messages similar to the above omitted
+End residue of secondary structure not found: HELIX 60 60 TYR O 232 ASP O 235
+4
+Start residue of secondary structure not found: HELIX 61 61 TYR P 223 ASP P
+1 5
+Start residue of secondary structure not found: HELIX 62 62 PRO Q 88 GLU Q 90
+3
+Start residue of secondary structure not found: HELIX 63 63 TYR Q 232 ASP Q
+1 4
+Start residue of secondary structure not found: HELIX 64 64 VAL R 33 LEU R 51
+19
+Start residue of secondary structure not found: HELIX 65 65 ARG R 55 GLU R 70
+16
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 16 16 1 LYS B 99 PHE B 107
+Start residue of secondary structure not found: SHEET 17 17 1 SER B 114 ALA B
+0
+Start residue of secondary structure not found: SHEET 18 18 1 ILE B 128 VAL B
+0
+Start residue of secondary structure not found: SHEET 19 19 1 THR B 144 GLU B
+0
+Start residue of secondary structure not found: SHEET 20 20 1 ARG B 156 LYS B
+0
+Start residue of secondary structure not found: SHEET 21 21 1 TRP B 169 ALA B
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 24 24 1 LEU B 225 ASP B
+0
+Start residue of secondary structure not found: SHEET 25 25 1 TYR D 31 ASP D
+0
+Start residue of secondary structure not found: SHEET 26 26 1 ALA D 48 GLY D
+0
+Start residue of secondary structure not found: SHEET 27 27 1 LYS D 63 ASN D
+0
+Start residue of secondary structure not found: SHEET 28 28 1 LYS D 85 PHE D
+0
+Start residue of secondary structure not found: SHEET 29 29 1 TRP D 100 THR D
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 88 88 1 LYS J 99 PHE J 107
+Start residue of secondary structure not found: SHEET 89 89 1 SER J 114 ALA J
+0
+Start residue of secondary structure not found: SHEET 90 90 1 ILE J 128 VAL J
+0
+Start residue of secondary structure not found: SHEET 91 91 1 THR J 144 GLU J
+0
+Start residue of secondary structure not found: SHEET 92 92 1 ARG J 156 LYS J
+0
+Start residue of secondary structure not found: SHEET 93 93 1 TRP J 169 ALA J
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 96 96 1 LEU J 225 ASP J
+0
+Start residue of secondary structure not found: SHEET 97 97 1 TYR K 31 ASP K
+0
+Start residue of secondary structure not found: SHEET 98 98 1 ALA K 48 GLY K
+0
+Start residue of secondary structure not found: SHEET 99 99 1 LYS K 63 ASN K
+0
+Start residue of secondary structure not found: SHEET 100 100 1 LYS K 85 PHE K
+0
+Start residue of secondary structure not found: SHEET 101 101 1 TRP K 100 THR
+K 106 0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 136 136 1 LYS O 99 PHE O
+0
+Start residue of secondary structure not found: SHEET 137 137 1 SER O 114 ALA
+O 119 0
+Start residue of secondary structure not found: SHEET 138 138 1 ILE O 128 VAL
+O 137 0
+Start residue of secondary structure not found: SHEET 139 139 1 THR O 144 GLU
+O 150 0
+Start residue of secondary structure not found: SHEET 140 140 1 ARG O 156 LYS
+O 163 0
+Start residue of secondary structure not found: SHEET 141 141 1 TRP O 169 ALA
+O 175 0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 144 144 1 LEU O 225 ASP O
+0
+Start residue of secondary structure not found: SHEET 145 145 1 TYR P 31 ASP P
+0
+Start residue of secondary structure not found: SHEET 146 146 1 ALA P 48 GLY P
+0
+Start residue of secondary structure not found: SHEET 147 147 1 LYS P 63 ASN P
+0
+Start residue of secondary structure not found: SHEET 148 148 1 LYS P 85 PHE P
+0
+Start residue of secondary structure not found: SHEET 149 149 1 TRP P 100 THR
+P 106 0
+messages similar to the above omitted
+Chain information for FlaB1_core_one-layer-2.pdb
+---
+Chain | Description
+.1/A 22.1/D 22.1/F 22.1/I 22.1/K 22.1/N 22.1/S | No description available
+.2/A | No description available
+.4/A | No description available
+.5/A | No description available
+.7/A | No description available
+.46/A | No description available
+.47/A | No description available
+.1/B 22.1/E 22.1/G 22.1/J 22.1/L 22.1/O 22.1/T | No description available
+.3/B | No description available
+.6/B | No description available
+.8/B | No description available
+.32/B | No description available
+.42/B | No description available
+.46/B | No description available
+.47/B | No description available
+.1/C 22.1/H 22.1/M 22.1/R | No description available
+.33/C | No description available
+.38/C | No description available
+.47/C | No description available
+.9/D | No description available
+.34/D | No description available
+.39/D | No description available
+.46/D | No description available
+.47/D | No description available
+.10/E | No description available
+.35/E | No description available
+.40/E | No description available
+.46/E 22.47/E 22.47/N 22.46/Z 22.46/f | No description available
+.11/F | No description available
+.47/F | No description available
+.12/H | No description available
+.46/H | No description available
+.47/H | No description available
+.47/I 22.46/T | No description available
+.14/J | No description available
+.47/J | No description available
+.41/K | No description available
+.15/M | No description available
+.47/M | No description available
+.16/N | No description available
+.17/O | No description available
+.47/O | No description available
+.18/Q | No description available
+.46/Q | No description available
+.47/Q 22.46/W | No description available
+.43/R 22.46/R 22.47/g | No description available
+.19/S | No description available
+.46/S | No description available
+.47/S | No description available
+.20/T | No description available
+.47/T | No description available
+.21/U | No description available
+.22/V | No description available
+.46/V | No description available
+.47/V | No description available
+.23/W | No description available
+.47/W | No description available
+.24/X | No description available
+.47/X | No description available
+.25/Y | No description available
+.46/Y | No description available
+.47/Y | No description available
+.26/Z | No description available
+.47/Z | No description available
+.27/a | No description available
+.47/a | No description available
+.28/b | No description available
+.46/b | No description available
+.47/b | No description available
+.29/c | No description available
+.46/c | No description available
+.47/c | No description available
+.47/d | No description available
+.30/e | No description available
+.46/e | No description available
+.47/e | No description available
+.31/f | No description available
+.47/f | No description available
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/FlaB1_core_one-
+> layer-1.pdb
+Summary of feedback from opening
+/Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/FlaB1_core_one-
+layer-1.pdb
+---
+warnings | Start residue of secondary structure not found: HELIX 1 1 TYR A 223 ASP A 227 1 5
+End residue of secondary structure not found: HELIX 17 17 GLN C 231 LYS C 233
+3
+Start residue of secondary structure not found: HELIX 18 18 TYR D 223 ASP D
+1 5
+Start residue of secondary structure not found: HELIX 19 19 PRO E 88 GLU E 90
+3
+Start residue of secondary structure not found: HELIX 20 20 TYR E 232 ASP E
+1 4
+Start residue of secondary structure not found: HELIX 21 21 TYR F 223 ASP F
+1 5
+Start residue of secondary structure not found: HELIX 24 24 VAL H 33 LEU H 51
+19
+messages similar to the above omitted
+End residue of secondary structure not found: HELIX 33 33 SER H 176 LEU H 189
+14
+Start residue of secondary structure not found: HELIX 34 34 ALA H 190 THR H
+1 3
+Start residue of secondary structure not found: HELIX 35 35 LYS H 196 ASN H
+1 13
+End residue of secondary structure not found: HELIX 36 36 THR H 214 GLY H 230
+17
+End residue of secondary structure not found: HELIX 37 37 GLN H 231 LYS H 233
+3
+Start residue of secondary structure not found: HELIX 42 42 PRO L 88 GLU L 90
+3
+Start residue of secondary structure not found: HELIX 43 43 TYR L 232 ASP L
+1 4
+End residue of secondary structure not found: HELIX 57 57 GLN M 231 LYS M 233
+3
+Start residue of secondary structure not found: HELIX 61 61 TYR P 223 ASP P
+1 5
+Start residue of secondary structure not found: HELIX 62 62 PRO Q 88 GLU Q 90
+3
+Start residue of secondary structure not found: HELIX 63 63 TYR Q 232 ASP Q
+1 4
+Start residue of secondary structure not found: HELIX 64 64 VAL R 33 LEU R 51
+19
+Start residue of secondary structure not found: HELIX 65 65 ARG R 55 GLU R 70
+16
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 8 8 1 THR A 147 TYR A 154
+Start residue of secondary structure not found: SHEET 9 9 1 LYS A 158 THR A
+0
+Start residue of secondary structure not found: SHEET 10 10 1 THR A 185 THR A
+0
+Start residue of secondary structure not found: SHEET 11 11 1 PHE A 202 ASP A
+0
+Start residue of secondary structure not found: SHEET 12 12 1 PHE A 209 ASP A
+0
+Start residue of secondary structure not found: SHEET 13 13 1 ILE B 47 GLU B
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 15 15 1 GLY B 70 ASN B 78
+Start residue of secondary structure not found: SHEET 20 20 1 ARG B 156 LYS B
+0
+Start residue of secondary structure not found: SHEET 21 21 1 TRP B 169 ALA B
+0
+Start residue of secondary structure not found: SHEET 25 25 1 TYR D 31 ASP D
+0
+Start residue of secondary structure not found: SHEET 26 26 1 ALA D 48 GLY D
+0
+Start residue of secondary structure not found: SHEET 27 27 1 LYS D 63 ASN D
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 56 56 1 THR F 147 TYR F
+0
+Start residue of secondary structure not found: SHEET 57 57 1 LYS F 158 THR F
+0
+Start residue of secondary structure not found: SHEET 58 58 1 THR F 185 THR F
+0
+Start residue of secondary structure not found: SHEET 59 59 1 PHE F 202 ASP F
+0
+Start residue of secondary structure not found: SHEET 60 60 1 PHE F 209 ASP F
+0
+Start residue of secondary structure not found: SHEET 61 61 1 ILE G 47 GLU G
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 63 63 1 GLY G 70 ASN G 78
+Start residue of secondary structure not found: SHEET 68 68 1 ARG G 156 LYS G
+0
+Start residue of secondary structure not found: SHEET 69 69 1 TRP G 169 ALA G
+0
+Start residue of secondary structure not found: SHEET 73 73 1 TYR I 31 ASP I
+0
+End residue of secondary structure not found: SHEET 74 74 1 ALA I 48 GLY I 53
+End residue of secondary structure not found: SHEET 75 75 1 LYS I 63 ASN I 68
+End residue of secondary structure not found: SHEET 78 78 1 ASN I 119 ALA I
+0
+End residue of secondary structure not found: SHEET 80 80 1 THR I 147 TYR I
+0
+Start residue of secondary structure not found: SHEET 81 81 1 LYS I 158 THR I
+0
+Start residue of secondary structure not found: SHEET 85 85 1 ILE J 47 GLU J
+0
+Start residue of secondary structure not found: SHEET 86 86 1 TRP J 61 MET J
+0
+End residue of secondary structure not found: SHEET 87 87 1 GLY J 70 ASN J 78
+Start residue of secondary structure not found: SHEET 92 92 1 ARG J 156 LYS J
+0
+Start residue of secondary structure not found: SHEET 93 93 1 TRP J 169 ALA J
+0
+Start residue of secondary structure not found: SHEET 97 97 1 TYR K 31 ASP K
+0
+End residue of secondary structure not found: SHEET 98 98 1 ALA K 48 GLY K 53
+End residue of secondary structure not found: SHEET 99 99 1 LYS K 63 ASN K 68
+End residue of secondary structure not found: SHEET 102 102 1 ASN K 119 ALA K
+0
+Start residue of secondary structure not found: SHEET 104 104 1 THR K 147 TYR
+K 154 0
+Start residue of secondary structure not found: SHEET 105 105 1 LYS K 158 THR
+K 166 0
+Start residue of secondary structure not found: SHEET 109 109 1 ILE L 47 GLU L
+0
+Start residue of secondary structure not found: SHEET 110 110 1 TRP L 61 MET L
+0
+Start residue of secondary structure not found: SHEET 111 111 1 GLY L 70 ASN L
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 122 122 1 ALA N 48 GLY N
+0
+End residue of secondary structure not found: SHEET 123 123 1 LYS N 63 ASN N
+0
+End residue of secondary structure not found: SHEET 126 126 1 ASN N 119 ALA N
+0
+Start residue of secondary structure not found: SHEET 128 128 1 THR N 147 TYR
+N 154 0
+Start residue of secondary structure not found: SHEET 133 133 1 ILE O 47 GLU O
+0
+Start residue of secondary structure not found: SHEET 134 134 1 TRP O 61 MET O
+0
+End residue of secondary structure not found: SHEET 135 135 1 GLY O 70 ASN O
+0
+Start residue of secondary structure not found: SHEET 140 140 1 ARG O 156 LYS
+O 163 0
+Start residue of secondary structure not found: SHEET 141 141 1 TRP O 169 ALA
+O 175 0
+Start residue of secondary structure not found: SHEET 145 145 1 TYR P 31 ASP P
+0
+Start residue of secondary structure not found: SHEET 146 146 1 ALA P 48 GLY P
+0
+Start residue of secondary structure not found: SHEET 147 147 1 LYS P 63 ASN P
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 177 177 1 LYS S 158 THR S
+0
+Start residue of secondary structure not found: SHEET 178 178 1 THR S 185 THR
+S 193 0
+Start residue of secondary structure not found: SHEET 179 179 1 PHE S 202 ASP
+S 207 0
+Start residue of secondary structure not found: SHEET 180 180 1 PHE S 209 ASP
+S 214 0
+Start residue of secondary structure not found: SHEET 181 181 1 ILE T 47 GLU T
+0
+Start residue of secondary structure not found: SHEET 182 182 1 TRP T 61 MET T
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 8 8 1 THR A 147 TYR A 154
+Start residue of secondary structure not found: SHEET 9 9 1 LYS A 158 THR A
+0
+Start residue of secondary structure not found: SHEET 10 10 1 THR A 185 THR A
+0
+Start residue of secondary structure not found: SHEET 11 11 1 PHE A 202 ASP A
+0
+Start residue of secondary structure not found: SHEET 12 12 1 PHE A 209 ASP A
+0
+Start residue of secondary structure not found: SHEET 13 13 1 ILE B 47 GLU B
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 15 15 1 GLY B 70 ASN B 78
+Start residue of secondary structure not found: SHEET 20 20 1 ARG B 156 LYS B
+0
+Start residue of secondary structure not found: SHEET 21 21 1 TRP B 169 ALA B
+0
+Start residue of secondary structure not found: SHEET 25 25 1 TYR D 31 ASP D
+0
+Start residue of secondary structure not found: SHEET 26 26 1 ALA D 48 GLY D
+0
+Start residue of secondary structure not found: SHEET 27 27 1 LYS D 63 ASN D
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 2 2 1 ALA A 48 GLY A 53 0
+End residue of secondary structure not found: SHEET 3 3 1 LYS A 63 ASN A 68 0
+End residue of secondary structure not found: SHEET 6 6 1 ASN A 119 ALA A 130
+Start residue of secondary structure not found: SHEET 8 8 1 THR A 147 TYR A
+0
+Start residue of secondary structure not found: SHEET 9 9 1 LYS A 158 THR A
+0
+Start residue of secondary structure not found: SHEET 13 13 1 ILE B 47 GLU B
+0
+Start residue of secondary structure not found: SHEET 14 14 1 TRP B 61 MET B
+0
+Start residue of secondary structure not found: SHEET 15 15 1 GLY B 70 ASN B
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 15 15 1 GLY B 70 ASN B 78
+Start residue of secondary structure not found: SHEET 20 20 1 ARG B 156 LYS B
+0
+Start residue of secondary structure not found: SHEET 21 21 1 TRP B 169 ALA B
+0
+Start residue of secondary structure not found: SHEET 25 25 1 TYR D 31 ASP D
+0
+Start residue of secondary structure not found: SHEET 26 26 1 ALA D 48 GLY D
+0
+Start residue of secondary structure not found: SHEET 27 27 1 LYS D 63 ASN D
+0
+messages similar to the above omitted
+End residue of secondary structure not found: HELIX 60 60 TYR O 232 ASP O 235
+4
+Start residue of secondary structure not found: HELIX 61 61 TYR P 223 ASP P
+1 5
+Start residue of secondary structure not found: HELIX 62 62 PRO Q 88 GLU Q 90
+3
+Start residue of secondary structure not found: HELIX 63 63 TYR Q 232 ASP Q
+1 4
+Start residue of secondary structure not found: HELIX 64 64 VAL R 33 LEU R 51
+19
+Start residue of secondary structure not found: HELIX 65 65 ARG R 55 GLU R 70
+16
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 184 184 1 LYS T 99 PHE T
+0
+Start residue of secondary structure not found: SHEET 185 185 1 SER T 114 ALA
+T 119 0
+Start residue of secondary structure not found: SHEET 186 186 1 ILE T 128 VAL
+T 137 0
+Start residue of secondary structure not found: SHEET 187 187 1 THR T 144 GLU
+T 150 0
+Start residue of secondary structure not found: SHEET 188 188 1 ARG T 156 LYS
+T 163 0
+Start residue of secondary structure not found: SHEET 189 189 1 TRP T 169 ALA
+T 175 0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 33 33 1 LYS D 158 THR D
+0
+Start residue of secondary structure not found: SHEET 34 34 1 THR D 185 THR D
+0
+Start residue of secondary structure not found: SHEET 35 35 1 PHE D 202 ASP D
+0
+Start residue of secondary structure not found: SHEET 36 36 1 PHE D 209 ASP D
+0
+Start residue of secondary structure not found: SHEET 37 37 1 ILE E 47 GLU E
+0
+Start residue of secondary structure not found: SHEET 38 38 1 TRP E 61 MET E
+0
+messages similar to the above omitted
+End residue of secondary structure not found: HELIX 3 3 TYR B 232 ASP B 235 1
+Start residue of secondary structure not found: HELIX 4 4 VAL C 33 LEU C 51 1
+Start residue of secondary structure not found: HELIX 5 5 ARG C 55 GLU C 70 1
+Start residue of secondary structure not found: HELIX 6 6 PRO C 76 SER C 84 1
+Start residue of secondary structure not found: HELIX 7 7 LEU C 85 THR C 87 1
+Start residue of secondary structure not found: HELIX 8 8 PRO C 105 VAL C 118
+14
+messages similar to the above omitted
+End residue of secondary structure not found: HELIX 60 60 TYR O 232 ASP O 235
+4
+Start residue of secondary structure not found: HELIX 61 61 TYR P 223 ASP P
+1 5
+Start residue of secondary structure not found: HELIX 62 62 PRO Q 88 GLU Q 90
+3
+Start residue of secondary structure not found: HELIX 63 63 TYR Q 232 ASP Q
+1 4
+Start residue of secondary structure not found: HELIX 64 64 VAL R 33 LEU R 51
+19
+Start residue of secondary structure not found: HELIX 65 65 ARG R 55 GLU R 70
+16
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 16 16 1 LYS B 99 PHE B 107
+Start residue of secondary structure not found: SHEET 17 17 1 SER B 114 ALA B
+0
+Start residue of secondary structure not found: SHEET 18 18 1 ILE B 128 VAL B
+0
+Start residue of secondary structure not found: SHEET 19 19 1 THR B 144 GLU B
+0
+Start residue of secondary structure not found: SHEET 20 20 1 ARG B 156 LYS B
+0
+Start residue of secondary structure not found: SHEET 21 21 1 TRP B 169 ALA B
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 24 24 1 LEU B 225 ASP B
+0
+Start residue of secondary structure not found: SHEET 25 25 1 TYR D 31 ASP D
+0
+Start residue of secondary structure not found: SHEET 26 26 1 ALA D 48 GLY D
+0
+Start residue of secondary structure not found: SHEET 27 27 1 LYS D 63 ASN D
+0
+Start residue of secondary structure not found: SHEET 28 28 1 LYS D 85 PHE D
+0
+Start residue of secondary structure not found: SHEET 29 29 1 TRP D 100 THR D
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 88 88 1 LYS J 99 PHE J 107
+Start residue of secondary structure not found: SHEET 89 89 1 SER J 114 ALA J
+0
+Start residue of secondary structure not found: SHEET 90 90 1 ILE J 128 VAL J
+0
+Start residue of secondary structure not found: SHEET 91 91 1 THR J 144 GLU J
+0
+Start residue of secondary structure not found: SHEET 92 92 1 ARG J 156 LYS J
+0
+Start residue of secondary structure not found: SHEET 93 93 1 TRP J 169 ALA J
+0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 96 96 1 LEU J 225 ASP J
+0
+Start residue of secondary structure not found: SHEET 97 97 1 TYR K 31 ASP K
+0
+Start residue of secondary structure not found: SHEET 98 98 1 ALA K 48 GLY K
+0
+Start residue of secondary structure not found: SHEET 99 99 1 LYS K 63 ASN K
+0
+Start residue of secondary structure not found: SHEET 100 100 1 LYS K 85 PHE K
+0
+Start residue of secondary structure not found: SHEET 101 101 1 TRP K 100 THR
+K 106 0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 136 136 1 LYS O 99 PHE O
+0
+Start residue of secondary structure not found: SHEET 137 137 1 SER O 114 ALA
+O 119 0
+Start residue of secondary structure not found: SHEET 138 138 1 ILE O 128 VAL
+O 137 0
+Start residue of secondary structure not found: SHEET 139 139 1 THR O 144 GLU
+O 150 0
+Start residue of secondary structure not found: SHEET 140 140 1 ARG O 156 LYS
+O 163 0
+Start residue of secondary structure not found: SHEET 141 141 1 TRP O 169 ALA
+O 175 0
+messages similar to the above omitted
+End residue of secondary structure not found: SHEET 144 144 1 LEU O 225 ASP O
+0
+Start residue of secondary structure not found: SHEET 145 145 1 TYR P 31 ASP P
+0
+Start residue of secondary structure not found: SHEET 146 146 1 ALA P 48 GLY P
+0
+Start residue of secondary structure not found: SHEET 147 147 1 LYS P 63 ASN P
+0
+Start residue of secondary structure not found: SHEET 148 148 1 LYS P 85 PHE P
+0
+Start residue of secondary structure not found: SHEET 149 149 1 TRP P 100 THR
+P 106 0
+messages similar to the above omitted
+Chain information for FlaB1_core_one-layer-1.pdb
+---
+Chain | Description
+.1/A 23.1/D 23.1/F 23.1/I 23.1/K 23.1/N 23.1/S | No description available
+.2/A | No description available
+.4/A | No description available
+.5/A | No description available
+.7/A | No description available
+.46/A | No description available
+.47/A | No description available
+.1/B 23.1/E 23.1/G 23.1/J 23.1/L 23.1/O 23.1/T | No description available
+.3/B | No description available
+.6/B | No description available
+.8/B | No description available
+.32/B | No description available
+.42/B | No description available
+.46/B | No description available
+.47/B | No description available
+.1/C 23.1/H 23.1/M 23.1/R | No description available
+.33/C | No description available
+.38/C | No description available
+.47/C | No description available
+.9/D | No description available
+.34/D | No description available
+.39/D | No description available
+.46/D | No description available
+.47/D | No description available
+.10/E | No description available
+.35/E | No description available
+.40/E | No description available
+.46/E 23.47/E 23.47/N 23.46/Z 23.46/f | No description available
+.11/F | No description available
+.47/F | No description available
+.12/H | No description available
+.46/H | No description available
+.47/H | No description available
+.47/I 23.46/T | No description available
+.14/J | No description available
+.47/J | No description available
+.41/K | No description available
+.15/M | No description available
+.47/M | No description available
+.16/N | No description available
+.17/O | No description available
+.47/O | No description available
+.18/Q | No description available
+.46/Q | No description available
+.47/Q 23.46/W | No description available
+.43/R 23.46/R 23.47/g | No description available
+.19/S | No description available
+.46/S | No description available
+.47/S | No description available
+.20/T | No description available
+.47/T | No description available
+.21/U | No description available
+.22/V | No description available
+.46/V | No description available
+.47/V | No description available
+.23/W | No description available
+.47/W | No description available
+.24/X | No description available
+.47/X | No description available
+.25/Y | No description available
+.46/Y | No description available
+.47/Y | No description available
+.26/Z | No description available
+.47/Z | No description available
+.27/a | No description available
+.47/a | No description available
+.28/b | No description available
+.46/b | No description available
+.47/b | No description available
+.29/c | No description available
+.46/c | No description available
+.47/c | No description available
+.47/d | No description available
+.30/e | No description available
+.46/e | No description available
+.47/e | No description available
+.31/f | No description available
+.47/f | No description available
+Computing secondary structure
+> hide
+> #22.13,36-37,44-45#23.13,36-37,44-45#!13#!22.1-12,14-35,38-43,46-47#!23.1-12,14-35,38-43,46-47
+> atoms
+> hide #!22 models
+> show #!22 models
+> hide #!13 models
+> hide #!22 models
+> show #!22 models
+> hide #!23 models
+> show #!23 models
+> close #23
+> close #22
+> show #!60 models
+> select add #60.1.5
+atoms, 2195 bonds, 286 residues, 1 model selected
+> select add #60.1.8
+atoms, 4390 bonds, 572 residues, 3 models selected
+> select add #60.1.10
+atoms, 6585 bonds, 858 residues, 5 models selected
+> select add #60.1.13
+atoms, 8780 bonds, 1144 residues, 7 models selected
+> select add #60.1.19
+atoms, 10975 bonds, 1430 residues, 9 models selected
+> select add #60.1.25
+atoms, 13170 bonds, 1716 residues, 10 models selected
+> select add #60.1.31
+atoms, 15365 bonds, 2002 residues, 11 models selected
+> select add #60.2.6
+atoms, 17560 bonds, 2288 residues, 12 models selected
+> select add #60.2.16
+atoms, 19755 bonds, 2574 residues, 13 models selected
+> select add #60.2.22
+atoms, 21950 bonds, 2860 residues, 14 models selected
+> select add #60.2.28
+atoms, 24145 bonds, 3146 residues, 15 models selected
+> combine sel
+> combine #13
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/FlaB1_core_one-
+> layer-2.pdb models #22
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/FlaB1_core_one-
+> layer-1.pdb models #23
+> rename #15-17 id #17
+> rename #14 id #15
+> hide #23 models
+> rename #22 id #14
+> color #13 #fff6b6ff
+> rename #14 core_one_layer_2
+> color #14 #fff6b6ff
+> split #14
+Split core_one_layer_2 (#14) into 11 models
+Chain information for core_one_layer_2 F #14.1
+---
+Chain | Description
+F | No description available
+Chain information for core_one_layer_2 G #14.2
+---
+Chain | Description
+G | No description available
+Chain information for core_one_layer_2 I #14.3
+---
+Chain | Description
+I | No description available
+Chain information for core_one_layer_2 K #14.4
+---
+Chain | Description
+K | No description available
+Chain information for core_one_layer_2 N #14.5
+---
+Chain | Description
+N | No description available
+Chain information for core_one_layer_2 Q #14.6
+---
+Chain | Description
+Q | No description available
+Chain information for core_one_layer_2 T #14.7
+---
+Chain | Description
+T | No description available
+Chain information for core_one_layer_2 W #14.8
+---
+Chain | Description
+W | No description available
+Chain information for core_one_layer_2 Z #14.9
+---
+Chain | Description
+Z | No description available
+Chain information for core_one_layer_2 c #14.10
+---
+Chain | Description
+c | No description available
+Chain information for core_one_layer_2 f #14.11
+---
+Chain | Description
+f | No description available
+> close #23
+> show #!13 models
+> hide sel surfaces
+> select clear
+> hide #14.1-11#60.1.19,25,31#60.2.6,16,22,28#!13#!60.1.5,8,10,13 surfaces
+> show #14.1-11#60.1.19,25,31#60.2.6,16,22,28#!13#!60.1.5,8,10,13 cartoons
+> hide #!17 models
+> color #14 #fff6b6ff models
+> show #!56 models
+> show #!55 models
+> hide #!56 models
+> hide #!55 models
+> show #!56 models
+> show #!55 models
+> interfaces
+> #14.1-11#60.1.19,25,31#60.2.6,16,22,28#!13#!55.1-5#!56.1-5#!60.1.5,8,10,13 &
+> ~solvent
+buried areas: #60.2.28/c #14.10/c 10945, #60.2.22/W #14.8/W 10878,
+#60.2.16/Q #14.6/Q 10686, #14.2/G #60.2.6/G 10593, #60.1.31/f #14.11/f 8486,
+#14.1/F #60.1.5/F 8453, #14.9/Z #60.1.25/Z 8453, #60.1.19/T #14.7/T 8451,
+#60.1.10/K #14.4/K 8448, #60.1.8/I #14.3/I 8441, #14.5/N #60.1.13/N 8420,
+#60.1.31/f #13/H 2051, #14.11/f #13/H 2051, #14.1/F #13/b 2039, #13/b
+#60.1.5/F 2039, #13/1 #60.1.25/Z 2037, #14.9/Z #13/1 2037, #14.6/Q #13/q 2013,
+#60.2.16/Q #13/q 2013, #13/i #60.1.8/I 2012, #13/i #14.3/I 2012, #60.1.19/T
+#13/u 2008, #14.7/T #13/u 2008, #14.4/K #13/k 2000, #60.1.10/K #13/k 2000,
+#14.5/N #13/o 1976, #60.1.13/N #13/o 1976, #14.2/G #14.1/F 1963, #14.2/G
+#60.1.5/F 1963, #60.2.6/G #14.1/F 1963, #60.2.6/G #60.1.5/F 1963, #14.8/W
+#13/w 1949, #60.2.22/W #13/w 1949, #13/q #13/u 1878, #13/3 #13/H 1878, #14.9/Z
+#13/3 1865, #13/3 #60.1.25/Z 1865, #13/1 #13/w 1861, #60.1.19/T #13/w 1855,
+#14.7/T #13/w 1855, #13/b #13/i 1850, #13/M #13/b 1847, #14.5/N #13/q 1846,
+#60.1.13/N #13/q 1846, #14.5/N #14.4/K 1846, #60.1.10/K #60.1.13/N 1846,
+#60.1.10/K #14.5/N 1846, #60.1.13/N #14.4/K 1846, #13/k #13/o 1843, #60.1.19/T
+#14.6/Q 1838, #14.6/Q #14.7/T 1838, #60.1.19/T #60.2.16/Q 1838, #60.2.16/Q
+#14.7/T 1838, #14.1/F #60.1.8/I 1831, #14.1/F #14.3/I 1831, #60.1.5/F
+#60.1.8/I 1831, #60.1.5/F #14.3/I 1831, #13/k #60.1.8/I 1826, #13/k #14.3/I
+, #60.1.31/f #13/M 1809, #14.11/f #13/M 1809, #14.10/c #13/3 1801,
+#60.2.28/c #13/3 1801, #14.2/G #13/M 1786, #60.2.6/G #13/M 1786, #60.1.31/f
+#60.2.28/c 1626, #60.2.28/c #14.11/f 1626, #60.1.31/f #14.10/c 1626, #14.11/f
+#14.10/c 1626, #14.9/Z #60.2.22/W 1520, #60.2.22/W #60.1.25/Z 1520, #14.9/Z
+#14.8/W 1520, #14.8/W #60.1.25/Z 1520, #56.2/B #56.3/C 1113, #55.2/B #55.3/C
+, #55.5/E #56.5/E 887, #55.2/B #56.2/B 807, #14.10/c #60.1.25/Z 807,
+#14.9/Z #14.10/c 807, #60.2.28/c #60.1.25/Z 807, #14.9/Z #60.2.28/c 807,
+#55.3/C #56.3/C 767, #55.1/A #55.4/D 703, #56.4/D #56.1/A 703, #60.1.31/f
+#14.2/G 693, #14.2/G #14.11/f 693, #60.1.31/f #60.2.6/G 693, #60.2.6/G
+#14.11/f 693, #55.1/A #56.1/A 676, #13/b #60.1.8/I 667, #13/b #14.3/I 667,
+#14.7/T #14.8/W 660, #60.1.19/T #14.8/W 660, #60.2.22/W #60.1.19/T 660,
+#60.2.22/W #14.7/T 660, #14.7/T #13/q 653, #60.1.19/T #13/q 653, #14.5/N #13/k
+, #60.1.13/N #13/k 653, #14.1/F #13/M 647, #13/M #60.1.5/F 647, #13/o #13/q
+, #13/u #13/w 639, #60.1.10/K #60.1.8/I 637, #14.4/K #60.1.8/I 637, #14.4/K
+#14.3/I 637, #60.1.10/K #14.3/I 637, #13/H #13/M 633, #13/i #13/k 630, #13/1
+#13/3 627, #60.1.31/f #13/3 621, #14.11/f #13/3 621, #56.4/D #55.4/D 619,
+#14.9/Z #13/w 618, #13/w #60.1.25/Z 618, #55.1/A #55.2/B 596, #56.1/A #56.2/B
+, #55.4/D #55.5/E 424, #56.4/D #56.5/E 424, #14.5/N #60.2.16/Q 423,
+#60.1.13/N #60.2.16/Q 423, #60.1.13/N #14.6/Q 423, #14.5/N #14.6/Q 423,
+#56.4/D #55.5/E 404, #13/b #56.2/B 326, #14.6/Q #13/u 325, #60.2.16/Q #13/u
+, #14.2/G #13/b 303, #60.2.6/G #13/b 303
+> show #!15 models
+> hide #!15 models
+> show #!7 models
+> interfaces
+> #14.1-11#60.1.19,25,31#60.2.6,16,22,28#!13#!7.1,4,7,10,13,16,19,22#!55.1-5#!56.1-5#!60.1.5,8,10,13
+> & ~solvent
+buried areas: #60.2.28/c #14.10/c 10945, #60.2.22/W #14.8/W 10878,
+#60.2.16/Q #14.6/Q 10686, #14.2/G #60.2.6/G 10593, #60.1.31/f #14.11/f 8486,
+#14.1/F #60.1.5/F 8453, #14.9/Z #60.1.25/Z 8453, #60.1.19/T #14.7/T 8451,
+#60.1.10/K #14.4/K 8448, #60.1.8/I #14.3/I 8441, #14.5/N #60.1.13/N 8420,
+#60.1.31/f #13/H 2051, #14.11/f #13/H 2051, #14.1/F #13/b 2039, #13/b
+#60.1.5/F 2039, #13/1 #60.1.25/Z 2037, #14.9/Z #13/1 2037, #14.6/Q #13/q 2013,
+#60.2.16/Q #13/q 2013, #13/i #60.1.8/I 2012, #13/i #14.3/I 2012, #60.1.19/T
+#13/u 2008, #14.7/T #13/u 2008, #14.4/K #13/k 2000, #60.1.10/K #13/k 2000,
+#14.5/N #13/o 1976, #60.1.13/N #13/o 1976, #14.2/G #14.1/F 1963, #14.2/G
+#60.1.5/F 1963, #60.2.6/G #14.1/F 1963, #60.2.6/G #60.1.5/F 1963, #14.8/W
+#13/w 1949, #60.2.22/W #13/w 1949, #13/q #13/u 1878, #13/3 #13/H 1878, #14.9/Z
+#13/3 1865, #13/3 #60.1.25/Z 1865, #13/1 #13/w 1861, #60.1.19/T #13/w 1855,
+#14.7/T #13/w 1855, #13/b #13/i 1850, #13/M #13/b 1847, #14.5/N #13/q 1846,
+#60.1.13/N #13/q 1846, #14.5/N #14.4/K 1846, #60.1.10/K #14.5/N 1846,
+#60.1.10/K #60.1.13/N 1846, #60.1.13/N #14.4/K 1846, #13/k #13/o 1843,
+#60.1.19/T #14.6/Q 1838, #14.6/Q #14.7/T 1838, #60.1.19/T #60.2.16/Q 1838,
+#60.2.16/Q #14.7/T 1838, #14.1/F #60.1.8/I 1831, #14.1/F #14.3/I 1831,
+#60.1.5/F #60.1.8/I 1831, #60.1.5/F #14.3/I 1831, #13/k #60.1.8/I 1826, #13/k
+#14.3/I 1826, #60.1.31/f #13/M 1809, #14.11/f #13/M 1809, #14.10/c #13/3 1801,
+#60.2.28/c #13/3 1801, #14.2/G #13/M 1786, #60.2.6/G #13/M 1786, #60.1.31/f
+#60.2.28/c 1626, #60.2.28/c #14.11/f 1626, #60.1.31/f #14.10/c 1626, #14.11/f
+#14.10/c 1626, #14.9/Z #60.2.22/W 1520, #60.2.22/W #60.1.25/Z 1520, #14.9/Z
+#14.8/W 1520, #14.8/W #60.1.25/Z 1520, #7.10/S #7.7/H 1315, #7.19/b #7.16/Y
+, #7.22/e #7.1/A 1305, #56.2/B #56.3/C 1113, #55.2/B #55.3/C 1112, #55.5/E
+#56.5/E 887, #55.2/B #56.2/B 807, #14.10/c #60.1.25/Z 807, #14.9/Z #14.10/c
+, #60.2.28/c #60.1.25/Z 807, #14.9/Z #60.2.28/c 807, #55.3/C #56.3/C 767,
+#55.1/A #55.4/D 703, #56.4/D #56.1/A 703, #60.1.31/f #14.2/G 693, #14.2/G
+#14.11/f 693, #60.1.31/f #60.2.6/G 693, #60.2.6/G #14.11/f 693, #55.1/A
+#56.1/A 676, #13/b #60.1.8/I 667, #13/b #14.3/I 667, #14.7/T #14.8/W 660,
+#60.1.19/T #14.8/W 660, #60.2.22/W #60.1.19/T 660, #60.2.22/W #14.7/T 660,
+#14.7/T #13/q 653, #60.1.19/T #13/q 653, #14.5/N #13/k 653, #60.1.13/N #13/k
+, #14.1/F #13/M 647, #13/M #60.1.5/F 647, #13/o #13/q 640, #13/u #13/w 639,
+#60.1.10/K #60.1.8/I 637, #14.4/K #60.1.8/I 637, #14.4/K #14.3/I 637,
+#60.1.10/K #14.3/I 637, #13/H #13/M 633, #13/i #13/k 630, #13/1 #13/3 627,
+#60.1.31/f #13/3 621, #14.11/f #13/3 621, #56.4/D #55.4/D 619, #14.9/Z #13/w
+, #13/w #60.1.25/Z 618, #55.1/A #55.2/B 596, #56.1/A #56.2/B 595, #7.4/D
+#56.5/E 487, #7.10/S #55.3/C 485, #55.4/D #55.5/E 424, #56.4/D #56.5/E 424,
+#14.5/N #60.2.16/Q 423, #60.1.13/N #60.2.16/Q 423, #60.1.13/N #14.6/Q 423,
+#14.5/N #14.6/Q 423, #56.4/D #55.5/E 404, #13/b #56.2/B 326, #14.6/Q #13/u
+, #60.2.16/Q #13/u 325, #7.10/S #56.3/C 318, #14.2/G #13/b 303, #60.2.6/G
+#13/b 303
+> select #56.2/B:135
+atoms, 15 bonds, 1 residue, 1 model selected
+> select add #56.3/C:106
+atoms, 22 bonds, 2 residues, 3 models selected
+> select clear
+> select #56.2/B:134
+atoms, 6 bonds, 1 residue, 1 model selected
+> select add #56.3/C:111
+atoms, 10 bonds, 2 residues, 3 models selected
+> hide #!56.1 models
+> hide #!55.2 models
+> select add #13/b:195
+atoms, 14 bonds, 3 residues, 4 models selected
+> select subtract #13.5
+atoms, 10 bonds, 2 residues, 4 models selected
+> hide #13.5 models
+> show #13.5 models
+> hide #13.5 models
+> show #13.5 models
+> hide #!13 models
+> select clear
+> interfaces
+> #14.1-11#60.1.19,25,31#60.2.6,16,22,28#!7.1,4,7,10,13,16,19,22#!55.1,3-5#!56.2-5#!60.1.5,8,10,13
+> & ~solvent
+buried areas: #60.2.28/c #14.10/c 10945, #60.2.22/W #14.8/W 10878,
+#60.2.16/Q #14.6/Q 10686, #14.2/G #60.2.6/G 10593, #60.1.31/f #14.11/f 8486,
+#14.1/F #60.1.5/F 8453, #14.9/Z #60.1.25/Z 8453, #60.1.19/T #14.7/T 8451,
+#60.1.10/K #14.4/K 8448, #60.1.8/I #14.3/I 8441, #14.5/N #60.1.13/N 8420,
+#14.2/G #14.1/F 1963, #14.2/G #60.1.5/F 1963, #60.2.6/G #14.1/F 1963,
+#60.2.6/G #60.1.5/F 1963, #14.5/N #14.4/K 1846, #60.1.10/K #60.1.13/N 1846,
+#60.1.10/K #14.5/N 1846, #60.1.13/N #14.4/K 1846, #60.1.19/T #14.6/Q 1838,
+#14.6/Q #14.7/T 1838, #60.1.19/T #60.2.16/Q 1838, #60.2.16/Q #14.7/T 1838,
+#14.1/F #60.1.8/I 1831, #14.1/F #14.3/I 1831, #60.1.5/F #60.1.8/I 1831,
+#60.1.5/F #14.3/I 1831, #60.1.31/f #60.2.28/c 1626, #60.2.28/c #14.11/f 1626,
+#60.1.31/f #14.10/c 1626, #14.11/f #14.10/c 1626, #14.9/Z #60.2.22/W 1520,
+#60.2.22/W #60.1.25/Z 1520, #14.9/Z #14.8/W 1520, #14.8/W #60.1.25/Z 1520,
+#7.10/S #7.7/H 1315, #7.19/b #7.16/Y 1313, #7.22/e #7.1/A 1305, #56.2/B
+#56.3/C 1113, #55.5/E #56.5/E 887, #14.10/c #60.1.25/Z 807, #14.9/Z #14.10/c
+, #60.2.28/c #60.1.25/Z 807, #14.9/Z #60.2.28/c 807, #55.3/C #56.3/C 767,
+#55.1/A #55.4/D 703, #60.1.31/f #14.2/G 693, #14.2/G #14.11/f 693, #60.1.31/f
+#60.2.6/G 693, #60.2.6/G #14.11/f 693, #14.7/T #14.8/W 660, #60.1.19/T #14.8/W
+, #60.2.22/W #60.1.19/T 660, #60.2.22/W #14.7/T 660, #60.1.10/K #60.1.8/I
+, #14.4/K #60.1.8/I 637, #14.4/K #14.3/I 637, #60.1.10/K #14.3/I 637,
+#56.4/D #55.4/D 619, #7.4/D #56.5/E 487, #7.10/S #55.3/C 485, #55.4/D #55.5/E
+, #56.4/D #56.5/E 424, #14.5/N #60.2.16/Q 423, #60.1.13/N #60.2.16/Q 423,
+#60.1.13/N #14.6/Q 423, #14.5/N #14.6/Q 423, #56.4/D #55.5/E 404, #7.10/S
+#56.3/C 318
+> ui tool show Contacts
+> contacts distanceOnly 4.0 ignoreHiddenModels true
+distances
+> show #19 models
+> show
+> #14.1-11#60.1.19,25,31#60.2.6,16,22,28#!7.1,4,7,10,13,16,19,22#!55.1,3-5#!56.2-5#!60.1.5,8,10,13
+> atoms
+> style
+> #14.1-11#60.1.19,25,31#60.2.6,16,22,28#!7.1,4,7,10,13,16,19,22#!55.1,3-5#!56.2-5#!60.1.5,8,10,13
+> stick
+Changed 81795 atom styles
+> hide
+> #14.1-11#60.1.19,25,31#60.2.6,16,22,28#!7.1,4,7,10,13,16,19,22#!55.1,3-5#!56.2-5#!60.1.5,8,10,13
+> atoms
+> show
+> #14.1-11#60.1.19,25,31#60.2.6,16,22,28#!7.1,4,7,10,13,16,19,22#!55.1,3-5#!56.2-5#!60.1.5,8,10,13
+> cartoons
+> hide #19 models
+> show #!56.1 models
+> show #!55.2 models
+> hbonds
+> #14.1-11#60.1.19,25,31#60.2.6,16,22,28#!7.1,4,7,10,13,16,19,22#!55.1-5#!56.1-5#!60.1.5,8,10,13
+> reveal true
+hydrogen bonds found
+> select add #55.3
+atoms, 1594 bonds, 2517 pseudobonds, 202 residues, 3 models selected
+> select subtract #55.3
+model selected
+> hide #!55 models
+> select add #56.3
+atoms, 1594 bonds, 2517 pseudobonds, 202 residues, 3 models selected
+> select add #56.2
+atoms, 3247 bonds, 4373 pseudobonds, 402 residues, 5 models selected
+> hide #!7 models
+> hide #!14 models
+> show #!14 models
+> hide #!14 models
+> hide #!60 models
+> hide #!56.5 models
+> hide #!56.4 models
+> hide #!56.1 models
+> select clear
+> hide #!56.2-3 atoms
+Drag select of 402 residues
+> select add #56.2
+atoms, 1653 bonds, 1856 pseudobonds, 402 residues, 6 models selected
+> select add #56.3
+atoms, 3247 bonds, 4373 pseudobonds, 402 residues, 6 models selected
+> ui tool show Contacts
+> contacts distanceOnly 4.0 ignoreHiddenModels true
+distances
+> show #19 models
+> select clear
+> select add #56.2
+atoms, 1653 bonds, 1856 pseudobonds, 200 residues, 3 models selected
+> select add #56.3
+atoms, 3247 bonds, 4373 pseudobonds, 402 residues, 5 models selected
+> show sel atoms
+> style sel stick
+Changed 3190 atom styles
+> style sel stick
+Changed 3190 atom styles
+> select clear
+> hide #!56.2-3 atoms
+> show #!15 models
+> hide #!15 models
+> show #!7 models
+> show #!7.1,4,7,10,13,16,19,22#!56.2-3 cartoons
+> hide #!7.1,4,7,10,13,16,19,22#!56.2-3 atoms
+> select #7.10/S:186
+atoms, 4 bonds, 1 residue, 1 model selected
+> select add #7.10
+atoms, 2669 bonds, 220 pseudobonds, 328 residues, 3 models selected
+> hide #19 models
+> select add #20
+atoms, 2669 bonds, 42577 pseudobonds, 328 residues, 3 models selected
+> select subtract #20
+atoms, 2669 bonds, 328 residues, 2 models selected
+> select add #56.3
+atoms, 4263 bonds, 2517 pseudobonds, 530 residues, 5 models selected
+> ui tool show Contacts
+> contacts distanceOnly 4.0 ignoreHiddenModels true
+distances
+> show #19 models
+> show #61 models
+> hide sel atoms
+> show sel surfaces
+> hide sel surfaces
+> hide #61 models
+> show #61 models
+> hide #61 models
+> close #7.2-3
+> close #7.5-6
+> close #7.8-9
+> close #7.11-12
+> close #7.14-15
+> close #7.17-18
+> close #7.20-21
+> close #7.23-24
+> hide #!7 models
+> show #!7 models
+> hide #!7.1 models
+> hide #!7.4 models
+> hide #!7.7 models
+> hide #!7.13 models
+> hide #!7.16 models
+> hide #!7.19 models
+> hide #!7.22 models
+> select clear
+> select #7.10/S:226
+atoms, 6 bonds, 1 residue, 1 model selected
+> select add #7.10/S:227
+atoms, 21 bonds, 2 residues, 2 models selected
+> select add #7.10/S:225
+atoms, 28 bonds, 3 residues, 2 models selected
+> select add #7.10/S:224
+atoms, 36 bonds, 4 residues, 2 models selected
+> select add #7.10/S:223
+atoms, 46 bonds, 5 residues, 2 models selected
+> select add #56.3/C:93
+atoms, 52 bonds, 6 residues, 3 models selected
+> select add #56.3/C:94
+atoms, 58 bonds, 7 residues, 4 models selected
+> select add #56.3/C:92
+atoms, 63 bonds, 8 residues, 4 models selected
+> select add #56.3/C:91
+atoms, 69 bonds, 9 residues, 4 models selected
+> hide (#!7.10#!56.3 & sel-residues & (protein|nucleic)) target a
+> cartoon hide (#!7.10#!56.3 & sel-residues)
+> show (#!7.10#!56.3 & sel-residues & backbone) target ab
+> style sel ball
+Changed 76 atom styles
+> color (#!7.10#!56.3 & sel) byhetero
+> select add #7.10/S:228
+atoms, 76 bonds, 10 residues, 4 models selected
+> select add #7.10/S:222
+atoms, 91 bonds, 11 residues, 4 models selected
+> hide (#!7.10#!56.3 & sel-residues & (protein|nucleic)) target a
+> cartoon hide (#!7.10#!56.3 & sel-residues)
+> show (#!7.10#!56.3 & sel-residues & backbone) target ab
+> select add #56.3/C:95
+atoms, 101 bonds, 12 residues, 4 models selected
+> select add #56.3/C:90
+atoms, 108 bonds, 13 residues, 4 models selected
+> hide (#!7.10#!56.3 & sel-residues & (protein|nucleic)) target a
+> cartoon hide (#!7.10#!56.3 & sel-residues)
+> show (#!7.10#!56.3 & sel-residues & backbone) target ab
+> select clear
+> select #7.10/S:224@O
+atom, 1 residue, 1 model selected
+> select add #56.3/C:92@CA
+atoms, 2 residues, 3 models selected
+> select clear
+> select #7.10/S:226@O
+atom, 1 residue, 1 model selected
+> select add #56.3/C:93@O
+atoms, 2 residues, 3 models selected
+> distance #7.10/S:226@O #56.3/C:93@O
+Distance between FlaA1_sheath_model S #7.10/S VAL 226 O and Asym_part_2 C
+#56.3/C VAL 93 O: 3.979Å
+> show #!21 models
+> show #21.1 models
+> select #7.10/S:224@O
+atom, 1 residue, 1 model selected
+> select add #56.3/C:92@CA
+atoms, 2 residues, 3 models selected
+> distance #7.10/S:224@O #56.3/C:92@CA
+Distance between FlaA1_sheath_model S #7.10/S GLU 224 O and Asym_part_2 C
+#56.3/C SER 92 CA: 3.649Å
+> select add #56.3/C:91@O
+atoms, 3 residues, 4 models selected
+> select subtract #56.3/C:92@CA
+atoms, 2 residues, 4 models selected
+> distance #7.10/S:224@O #56.3/C:91@O
+Distance between FlaA1_sheath_model S #7.10/S GLU 224 O and Asym_part_2 C
+#56.3/C THR 91 O: 3.488Å
+> select add #7.10/S:224@C
+atoms, 2 residues, 4 models selected
+> select subtract #7.10/S:224@O
+atoms, 2 residues, 4 models selected
+> distance #56.3/C:91@O #7.10/S:224@C
+Distance between Asym_part_2 C #56.3/C THR 91 O and FlaA1_sheath_model S
+#7.10/S GLU 224 C: 3.724Å
+> select add #7.10/S:224@N
+atoms, 1 bond, 2 residues, 4 models selected
+> select subtract #7.10/S:224@C
+atoms, 2 residues, 4 models selected
+> distance #56.3/C:91@O #7.10/S:224@N
+Distance between Asym_part_2 C #56.3/C THR 91 O and FlaA1_sheath_model S
+#7.10/S GLU 224 N: 3.695Å
+> hide #19 models
+> select clear
+> ~distance #56.3/C:91@O #7.10/S:224@C
+> ~distance #7.10/S:226@O #56.3/C:93@O
+> select clear
+Drag select of 35 atoms, 6 residues, 31 bonds, 3 pseudobonds
+> select add #56.3
+atoms, 1603 bonds, 2520 pseudobonds, 210 residues, 7 models selected
+> select subtract #56.3
+atoms, 9 bonds, 8 residues, 3 models selected
+> select add #56.3
+atoms, 1603 bonds, 2517 pseudobonds, 210 residues, 5 models selected
+> select add #56.2
+atoms, 3256 bonds, 4373 pseudobonds, 410 residues, 7 models selected
+> select subtract #56.2
+atoms, 1603 bonds, 2517 pseudobonds, 210 residues, 7 models selected
+> select add #7.10
+atoms, 4263 bonds, 6515 pseudobonds, 530 residues, 6 models selected
+> select clear
+> hide #!56.2 models
+> color #21 #3587b7ff models
+> hide #21.1 models
+> show #19 models
+> select #7.10/S:226@O
+atom, 1 residue, 1 model selected
+> select add #56.3/C:93@O
+atoms, 2 residues, 3 models selected
+> distance #7.10/S:226@O #56.3/C:93@O
+Distance between FlaA1_sheath_model S #7.10/S VAL 226 O and Asym_part_2 C
+#56.3/C VAL 93 O: 3.979Å
+> select #7.10/S:224@O
+atom, 1 residue, 1 model selected
+> select #7.10/S:224@C
+atom, 1 residue, 1 model selected
+> select add #56.3/C:91@O
+atoms, 2 residues, 3 models selected
+> distance #7.10/S:224@C #56.3/C:91@O
+Distance between FlaA1_sheath_model S #7.10/S GLU 224 C and Asym_part_2 C
+#56.3/C THR 91 O: 3.724Å
+> hide #19 models
+> color #21 #3587b7ff models
+> show #21.1 models
+> hide #21.1 models
+> select clear
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/4-FlaA1_HEAT_inter.png
+> width 1625 height 1210 supersample 3 transparentBackground true
+> select #7.10/S:226@C
+atom, 1 residue, 1 model selected
+> select #7.10/S:224@C
+atom, 1 residue, 1 model selected
+> show #21.1 models
+> select #56.3/C:93@C
+atom, 1 residue, 1 model selected
+> select #56.3/C:91@O
+atom, 1 residue, 1 model selected
+> select #56.3/C:92@CA
+atom, 1 residue, 1 model selected
+> select #56.3/C:93@O
+atom, 1 residue, 1 model selected
+> hide #21.1 models
+> select add #21
+pseudobonds, 2 models selected
+> select subtract #21
+Nothing selected
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/4-FlaA1_HEAT_complex.png
+> width 1625 height 1210 supersample 3 transparentBackground true
+> hide #!56.3 models
+> show #!56.1 models
+> show #!56.2 models
+> show #!56.3 models
+> show #!56.4 models
+> show #!56.5 models
+> hide #!56 models
+> hide #!21 models
+> hide #!7 models
+> show #5 models
+> hide #5 atoms
+> show #5 cartoons
+> show #!60 models
+> hide #5 models
+> hide #!60 models
+> show #!13 models
+> show #!14 models
+> hide #14.2,5,7-8,10#!13#!14.1,3-4,6,9,11 atoms
+> show #14.1-11#!13 cartoons
+> select add #13
+atoms, 24145 bonds, 3146 residues, 1 model selected
+> show sel cartoons
+> hide sel atoms
+> select add #14
+atoms, 48290 bonds, 2994 pseudobonds, 6292 residues, 25 models selected
+> show sel cartoons
+> hide sel atoms
+> select subtract #13
+atoms, 24145 bonds, 2994 pseudobonds, 3146 residues, 24 models selected
+> select subtract #14
+Nothing selected
+> interfaces #14.1-11#!13 & ~solvent
+buried areas: #14.11/f #13/H 2051, #14.1/F #13/b 2039, #14.9/Z #13/1 2037,
+#14.6/Q #13/q 2013, #13/i #14.3/I 2012, #14.7/T #13/u 2008, #14.4/K #13/k
+, #14.5/N #13/o 1976, #14.2/G #14.1/F 1963, #14.8/W #13/w 1949, #13/q
+#13/u 1878, #13/3 #13/H 1878, #14.9/Z #13/3 1865, #13/1 #13/w 1861, #14.7/T
+#13/w 1855, #13/b #13/i 1850, #13/M #13/b 1847, #14.5/N #13/q 1846, #14.5/N
+#14.4/K 1846, #13/k #13/o 1843, #14.6/Q #14.7/T 1838, #14.1/F #14.3/I 1831,
+#13/k #14.3/I 1826, #14.11/f #13/M 1809, #14.10/c #13/3 1801, #14.2/G #13/M
+, #14.11/f #14.10/c 1626, #14.9/Z #14.8/W 1520, #14.9/Z #14.10/c 807,
+#14.2/G #14.11/f 693, #13/b #14.3/I 667, #14.7/T #14.8/W 660, #14.7/T #13/q
+, #14.5/N #13/k 653, #14.1/F #13/M 647, #13/o #13/q 640, #13/u #13/w 639,
+#14.4/K #14.3/I 637, #13/H #13/M 633, #13/i #13/k 630, #13/1 #13/3 627,
+#14.11/f #13/3 621, #14.9/Z #13/w 618, #14.5/N #14.6/Q 423, #14.6/Q #13/u 325,
+#14.2/G #13/b 303
+> select add #13.11
+atoms, 286 residues, 1 model selected
+> select subtract #13.11
+model selected
+> select clear
+> select add #13.1
+atoms, 286 residues, 1 model selected
+> select add #13.2
+atoms, 572 residues, 2 models selected
+> select subtract #13.2
+atoms, 286 residues, 3 models selected
+> select #14.9/Z:206
+atoms, 3 bonds, 1 residue, 1 model selected
+> select add #13/1:195
+atoms, 7 bonds, 2 residues, 2 models selected
+> select add #14
+atoms, 24149 bonds, 2994 pseudobonds, 3147 residues, 15 models selected
+> select subtract #14
+atoms, 4 bonds, 1 residue, 2 models selected
+> select add #14.9/Z:209
+atoms, 12 bonds, 2 residues, 3 models selected
+> select add #14.9
+atoms, 2199 bonds, 279 pseudobonds, 287 residues, 4 models selected
+> hide #14.1-11 target m
+> show #14.9 models
+> hide #13.1-11 target m
+> show #13.1 models
+> hide #13.1 models
+> show #13.1 models
+> hide #!13 models
+> show #!13 models
+> hide #!13 target m
+> show #!13 models
+> show #13.2 models
+> hide #13.2 models
+> select subtract #13.1
+atoms, 2195 bonds, 279 pseudobonds, 286 residues, 3 models selected
+> select add #13.1
+atoms, 2195 bonds, 279 pseudobonds, 572 residues, 3 models selected
+> show #13.1-11 target m
+> hide #!13 models
+> show #!13 models
+> hide #13.1 models
+> hide #13.2 models
+> hide #13.3 models
+> show #13.1 models
+> show #13.2 models
+> show #13.3 models
+> show sel surfaces
+> hide sel surfaces
+> select subtract #13.1
+atoms, 2195 bonds, 279 pseudobonds, 286 residues, 4 models selected
+> select add #13
+atoms, 26340 bonds, 279 pseudobonds, 3432 residues, 4 models selected
+> show sel surfaces
+> hide sel surfaces
+> show sel cartoons
+> hide sel atoms
+> hide #13.1 models
+> show #13.1 models
+> hide #!13 models
+> show #!13 models
+> select subtract #13
+atoms, 2195 bonds, 279 pseudobonds, 286 residues, 14 models selected
+> select add #13.1
+atoms, 2195 bonds, 279 pseudobonds, 572 residues, 4 models selected
+> select add #20
+atoms, 2195 bonds, 42577 pseudobonds, 572 residues, 5 models selected
+> select subtract #20
+atoms, 2195 bonds, 572 residues, 4 models selected
+> hide #!13 target m
+> show #!13 target m
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/Fig_data/FlaB1_core_one-
+> layer-1.pdb
+Chain information for FlaB1_core_one-layer-1.pdb #16
+---
+Chain | Description
+3 H M b i k o q u w | No description available
+> split #16
+Split FlaB1_core_one-layer-1.pdb (#16) into 11 models
+Chain information for FlaB1_core_one-layer-1.pdb 1 #16.1
+---
+Chain | Description
+| No description available
+Chain information for FlaB1_core_one-layer-1.pdb 3 #16.2
+---
+Chain | Description
+| No description available
+Chain information for FlaB1_core_one-layer-1.pdb H #16.3
+---
+Chain | Description
+H | No description available
+Chain information for FlaB1_core_one-layer-1.pdb M #16.4
+---
+Chain | Description
+M | No description available
+Chain information for FlaB1_core_one-layer-1.pdb b #16.5
+---
+Chain | Description
+b | No description available
+Chain information for FlaB1_core_one-layer-1.pdb i #16.6
+---
+Chain | Description
+i | No description available
+Chain information for FlaB1_core_one-layer-1.pdb k #16.7
+---
+Chain | Description
+k | No description available
+Chain information for FlaB1_core_one-layer-1.pdb o #16.8
+---
+Chain | Description
+o | No description available
+Chain information for FlaB1_core_one-layer-1.pdb q #16.9
+---
+Chain | Description
+q | No description available
+Chain information for FlaB1_core_one-layer-1.pdb u #16.10
+---
+Chain | Description
+u | No description available
+Chain information for FlaB1_core_one-layer-1.pdb w #16.11
+---
+Chain | Description
+w | No description available
+> hide #!16 models
+> show #!16 models
+> hide #16.1 models
+> show #16.1 models
+> close #13
+> rename #16 id #13
+> select add #13
+atoms, 26340 bonds, 3432 residues, 14 models selected
+> hide sel atoms
+> show sel cartoons
+> color #13 #fff6b6ff models
+> select subtract #13
+atoms, 2195 bonds, 286 residues, 2 models selected
+> select add #13.1
+atoms, 4390 bonds, 572 residues, 3 models selected
+> hide #13.1 models
+> show #13.1 models
+> hide #13.2 models
+> hide #13.3 models
+> hide #13.4 models
+> hide #13.5 models
+> hide #13.6 models
+> hide #13.7 models
+> hide #13.8 models
+> hide #13.9 models
+> hide #13.10 models
+> hide #13.11 models
+> select clear
+> color #13.1 #ffdb8eff
+> color #13.1 #fff6b6ff
+> color #13.1 #febe0eff
+> interfaces #13.1#!14.9 & ~solvent
+buried areas: #14.9/Z #13.1/1 2037
+> show sel atoms
+> style sel sphere
+Changed 643 atom styles
+> hide sel atoms
+> select clear
+> ui tool show Contacts
+> contacts distanceOnly 4.0 ignoreHiddenModels true
+distances
+> show #19 models
+> select #14.9/Z:154
+atoms, 15 bonds, 1 residue, 1 model selected
+> select #14.9/Z:155
+atoms, 11 bonds, 1 residue, 1 model selected
+> select add #14.9/Z:154
+atoms, 26 bonds, 2 residues, 2 models selected
+> select add #14.9/Z:153
+atoms, 33 bonds, 3 residues, 2 models selected
+> select add #13.1/1:99
+atoms, 40 bonds, 4 residues, 3 models selected
+> select add #13.1/1:100
+atoms, 43 bonds, 5 residues, 3 models selected
+> select add #14.9/Z:152
+atoms, 48 bonds, 6 residues, 3 models selected
+> select add #14.9/Z:156
+atoms, 58 bonds, 7 residues, 3 models selected
+> select add #13.1/1:101
+atoms, 65 bonds, 8 residues, 3 models selected
+> select add #13.1/1:98
+atoms, 70 bonds, 9 residues, 3 models selected
+> hide (#13.1#!14.9 & sel-residues & (protein|nucleic)) target a
+> cartoon hide (#13.1#!14.9 & sel-residues)
+> show (#13.1#!14.9 & sel-residues & backbone) target ab
+> style sel ball
+Changed 75 atom styles
+> color (#13.1#!14.9 & sel) byhetero
+> color (#13.1#!14.9 & sel) #fff6b6ff
+> color (#13.1#!14.9 & sel) #febe0eff
+Alignment identifier is 1
+> select subtract #14.9/Z:152@CA
+atoms, 67 bonds, 9 residues, 3 models selected
+> select #14.9/Z:98 #13.1/1:98
+atoms, 10 bonds, 2 residues, 2 models selected
+> select #14.9/Z:98-101 #13.1/1:98-101
+atoms, 50 bonds, 17 pseudobonds, 8 residues, 4 models selected
+[ID: 1] region chains 1,Z [98-101] RMSD: 51.910
+> select #14.9/Z:153@CA
+atom, 1 residue, 1 model selected
+> select add #14.9/Z:152@CA
+atoms, 2 residues, 2 models selected
+> select add #14.9/Z:154@CA
+atoms, 3 residues, 2 models selected
+> select #14.9/Z:152 #13.1/1:152
+atoms, 10 bonds, 2 residues, 2 models selected
+> select #14.9/Z:152-156 #13.1/1:152-156
+atoms, 104 bonds, 29 pseudobonds, 10 residues, 3 models selected
+[ID: 1] region chains 1,Z [152-156] RMSD: 52.048
+> color (#13.1#!14.9 & sel) #fff6b6ff
+> select clear
+> select #14.9/Z:154@C
+atom, 1 residue, 1 model selected
+> select #14.9/Z:154-155 #13.1/1:154-155
+atoms, 54 bonds, 1 pseudobond, 4 residues, 3 models selected
+> select #14.9/Z:155 #13.1/1:155
+atoms, 22 bonds, 2 residues, 2 models selected
+> select #14.9/Z:154-155 #13.1/1:154-155
+atoms, 54 bonds, 1 pseudobond, 4 residues, 3 models selected
+> select #14.9/Z:155 #13.1/1:155
+atoms, 22 bonds, 2 residues, 2 models selected
+> select #14.9/Z:155-156 #13.1/1:155-156
+atoms, 44 bonds, 4 residues, 2 models selected
+[ID: 1] region chains 1,Z [155-156] RMSD: 51.918
+> select #14.9/Z:154 #13.1/1:154
+atoms, 30 bonds, 2 residues, 2 models selected
+> select #14.9/Z:154 #13.1/1:154
+atoms, 30 bonds, 2 residues, 2 models selected
+[ID: 1] region chains 1,Z [154] RMSD: 52.219
+> select #14.9/Z:156 #13.1/1:156
+atoms, 20 bonds, 2 residues, 2 models selected
+> select #14.9/Z:155-156 #13.1/1:155-156
+atoms, 44 bonds, 4 residues, 2 models selected
+[ID: 1] region chains 1,Z [155-156] RMSD: 51.918
+> select #14.9/Z:154 #13.1/1:154
+atoms, 30 bonds, 2 residues, 2 models selected
+> select #14.9/Z:154-155 #13.1/1:154-155
+atoms, 54 bonds, 1 pseudobond, 4 residues, 3 models selected
+[ID: 1] region chains 1,Z [154-155] RMSD: 52.074
+> select clear
+> select #14.9/Z:154 #13.1/1:154
+atoms, 30 bonds, 2 residues, 2 models selected
+> select #14.9/Z:154 #13.1/1:154
+atoms, 30 bonds, 2 residues, 2 models selected
+[ID: 1] region chains 1,Z [154] RMSD: 52.219
+> color (#13.1#!14.9 & sel) byhetero
+> select #13.1/1:100@N
+atom, 1 residue, 1 model selected
+> select #14.9/Z:100 #13.1/1:100
+atoms, 6 bonds, 2 residues, 2 models selected
+> select #14.9/Z:100-102 #13.1/1:100-102
+atoms, 48 bonds, 22 pseudobonds, 6 residues, 3 models selected
+[ID: 1] region chains 1,Z [100-102] RMSD: 51.909
+> select #14.9/Z:98 #13.1/1:98
+atoms, 10 bonds, 2 residues, 2 models selected
+> select #14.9/Z:98-100 #13.1/1:98-100
+atoms, 34 bonds, 7 pseudobonds, 6 residues, 4 models selected
+[ID: 1] region chains 1,Z [98-100] RMSD: 51.908
+> color #19 #a9fab5ff models
+> color #19 forestgreen models
+> select clear
+> select #13.1/1:100@CA
+atom, 1 residue, 1 model selected
+> select add #13.1/1:100@N
+atoms, 1 residue, 1 model selected
+> select add #13.1/1:99@CA
+atoms, 2 residues, 1 model selected
+> select add #13.1/1:98@O
+atoms, 3 residues, 1 model selected
+> select add #13.1/1:99@C
+atoms, 3 residues, 1 model selected
+> select #14.9/Z:98 #13.1/1:98
+atoms, 10 bonds, 2 residues, 2 models selected
+> select #14.9/Z:98-100 #13.1/1:98-100
+atoms, 34 bonds, 7 pseudobonds, 6 residues, 4 models selected
+[ID: 1] region chains 1,Z [98-100] RMSD: 51.908
+> color (#13.1#!14.9 & sel) byhetero
+> select clear
+> select add #19
+pseudobonds, 1 model selected
+> select subtract #19
+Nothing selected
+> select #13.1/1:100@CA
+atom, 1 residue, 1 model selected
+> select add #14.9/Z:154@O
+atoms, 2 residues, 2 models selected
+> distance #13.1/1:100@CA #14.9/Z:154@O
+Distance between FlaB1_core_one-layer-1.pdb 1 #13.1/1 GLY 100 CA and
+core_one_layer_2 Z #14.9/Z TRP 154 O: 3.554Å
+> show #!21 models
+> show #21.1 models
+> color #21 forestgreen models
+> color #21 #3587b7ff models
+> select #13.1/1:100@N
+atom, 1 residue, 1 model selected
+> select add #14.9/Z:154@C
+atoms, 2 residues, 2 models selected
+> distance #13.1/1:100@N #14.9/Z:154@C
+Distance between FlaB1_core_one-layer-1.pdb 1 #13.1/1 GLY 100 N and
+core_one_layer_2 Z #14.9/Z TRP 154 C: 3.967Å
+> select subtract #14.9/Z:154@C
+atom, 1 residue, 2 models selected
+> select add #14.9/Z:154@O
+atoms, 2 residues, 2 models selected
+> distance #13.1/1:100@N #14.9/Z:154@O
+Distance between FlaB1_core_one-layer-1.pdb 1 #13.1/1 GLY 100 N and
+core_one_layer_2 Z #14.9/Z TRP 154 O: 2.879Å
+> select subtract #13.1/1:100@N
+atom, 1 residue, 2 models selected
+> select add #13.1/1:99@C
+atoms, 2 residues, 3 models selected
+> distance #14.9/Z:154@O #13.1/1:99@C
+Distance between core_one_layer_2 Z #14.9/Z TRP 154 O and FlaB1_core_one-
+layer-1.pdb 1 #13.1/1 ASN 99 C: 3.471Å
+> select add #13.1/1:100@N
+atoms, 3 residues, 3 models selected
+> select subtract #13.1/1:100@N
+atoms, 2 residues, 3 models selected
+> select subtract #13.1/1:99@C
+atom, 1 residue, 2 models selected
+> select add #13.1/1:98@O
+atoms, 2 residues, 3 models selected
+> select subtract #13.1/1:98@O
+atom, 1 residue, 2 models selected
+> select add #13.1/1:99@CA
+atoms, 2 residues, 3 models selected
+> distance #14.9/Z:154@O #13.1/1:99@CA
+Distance between core_one_layer_2 Z #14.9/Z TRP 154 O and FlaB1_core_one-
+layer-1.pdb 1 #13.1/1 ASN 99 CA: 3.654Å
+> select add #13.1/1:98@O
+atoms, 1 pseudobond, 3 residues, 4 models selected
+> select clear
+> select add #14.9/Z:154@O
+atom, 1 residue, 1 model selected
+> select add #13.1/1:98@O
+atoms, 2 residues, 3 models selected
+> distance #14.9/Z:154@O #13.1/1:98@O
+Distance between core_one_layer_2 Z #14.9/Z TRP 154 O and FlaB1_core_one-
+layer-1.pdb 1 #13.1/1 SER 98 O: 3.349Å
+> color #21 forestgreen models
+> color #21 #3587b7ff models
+> select #14.9/Z:66
+atoms, 4 bonds, 1 residue, 1 model selected
+> select clear
+> hide #19 models
+> hide #21.1 models
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/4-FlaB1_FlaB1_inter-1.png
+> width 1625 height 1210 supersample 3 transparentBackground true
+> hide #!21 models
+> show #!21 models
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/4-FlaB1_FlaB1_complex-1.png
+> width 1625 height 1210 supersample 3 transparentBackground true
+> hide #!21 models
+> show #13.1#!14.9 cartoons
+> show #14.8 models
+> hide #!14.9 models
+> show #!14.9 models
+> hide #14.8 models
+> show #14.8 models
+> hide #!14.9 models
+> show #!14.9 models
+> hide #13.1 models
+> color #14.8 #febe0eff
+> color #14.8 #ffb512ff
+> color #14.8 #febe0eff
+> color #13.1 #ffb512ff
+> color #13.1 #febe0eff
+> ui tool show Contacts
+> contacts distanceOnly 4.0 ignoreHiddenModels true
+distances
+> show #19 models
+> show #14.10 models
+> ui tool show Contacts
+> contacts ignoreHiddenModels true
+contacts
+> ui tool show Contacts
+> contacts distanceOnly 4.0 ignoreHiddenModels true
+distances
+> hide #19 models
+> hide #!14 models
+> hide #!13 models
+> show #!15 models
+> hide #!15 models
+> show #!18 models
+> hide #!18 models
+> show #!7 models
+> show #!7.7 models
+> show #!7.4 models
+> hide #!7.4 models
+> show #!7.13 models
+> show #!7.7,10,13 cartoons
+> show #!7.1 models
+> show #!7.4 models
+> show #!7.16 models
+> show #!7.19 models
+> show #!7.22 models
+> hide #!7 models
+> show #!18 models
+> show #!18 cartoons
+> hide #!18 surfaces
+> hide #!18 atoms
+> select #18/T:309
+atoms, 8 bonds, 1 residue, 1 model selected
+> select add #18/U:304
+atoms, 16 bonds, 2 residues, 2 models selected
+> select add #18/W:224
+atoms, 24 bonds, 3 residues, 3 models selected
+> select add #18/X:185
+atoms, 31 bonds, 4 residues, 4 models selected
+> hide #18.1 models
+> hide #18.2 models
+> hide #18.3 models
+> hide #18.4 models
+> hide #18.5 models
+> hide #18.6 models
+> hide #18.7 models
+> hide #18.8 models
+> hide #18.9 models
+> hide #18.10 models
+> hide #18.11-16 target m
+> hide #18.17 models
+> hide #18.18 models
+> hide #18.19 models
+> hide #18.22 models
+> hide #18.25-33 target m
+> hide #!18 models
+> show #!18 models
+Drag select of 10824 residues
+> select clear
+> hide #!18 models
+> select add #18
+atoms, 88077 bonds, 10824 residues, 1 model selected
+> show #!18 models
+> close #20
+> hide #!18 models
+> select subtract #18
+models selected
+> show #!59 models
+> hide #59.1-2,4-8,10-11,13,15-17,19-26,28-29,31,33#!59.3,9,12,14,18,27,30,32
+> cartoons
+> show #59.1-2,6-7,11,16,21,33#!59.3-5,8-10,12-15,17-20,22-32 cartoons
+> show #59.1-2,4-8,10-11,13,15-17,19-26,28-29,31,33#!59.3,9,12,14,18,27,30,32
+> cartoons
+> hide #59.1-2,4-8,10-11,13,15-17,19-26,28-29,31,33#!59.3,9,12,14,18,27,30,32
+> atoms
+> hide #59.1 models
+> show #59.1 models
+> select #59.5/E:312
+atoms, 8 bonds, 1 residue, 1 model selected
+> select add #59.8/H:330
+atoms, 16 bonds, 2 residues, 2 models selected
+> select add #59.20/T:187
+atoms, 22 bonds, 3 residues, 3 models selected
+> select add #59.21/U:26
+atoms, 29 bonds, 4 residues, 4 models selected
+> hide #59.4 models
+> hide #!59.3 models
+> hide #59.2 models
+> hide #59.1 models
+> hide #59.10-11,13,15-17,19#!59.9,12,14,18 target m
+> hide #59.22-26,28-29,31,33#!59.27,30,32 target m
+> hide #59.6 models
+> hide #59.7 models
+> select clear
+> ui tool show Contacts
+> contacts distanceOnly 4.0 ignoreHiddenModels true
+distances
+> show #19 models
+> color #59.5 #a9fab5ff
+> color #59.8 #58ac5aff
+> color #59.20 #80e388ff
+> color #59.21 #a9fab5ff
+> color #59.8 #a9fab5ff
+> color #59.8 #58ac5aff
+> color #59.20 forestgreen
+> color #59.21 #3587b7ff
+> color #59.21 forestgreen
+> color #59.21 #1a6b20ff
+> color #59.21 #3eff4cff
+> color #59.21 #39ec46ff
+> color #59.21 #37e243ff
+> color #59.21 #35da41ff
+> color #59.21 #a9fab5ff
+> color #59.21 #cefae6ff
+> color #59.21 #c8fac3ff
+> color #59.21 #cafac5ff
+> color #59.21 #d4fad6ff
+> color #59.21 #d7fdd8ff
+> color #19 forestgreen models
+> color #19 #feff46ff models
+> color #19 forestgreen models
+> color #19 #ffdb8eff models
+> color #19 #fdd900ff models
+> color #19 #bbbbbbff models
+> color #19 #edaf00ff models
+> color #19 #ffb7e4ff models
+> show #!1 models
+> hide #!1 models
+> show #!2 models
+> hide #!2 models
+> show #!4 models
+> hide #!4 models
+> show #!6 models
+> hide #!6 models
+> show #!103 models
+> show #59.1 models
+> show #59.2 models
+> show #!59.3 models
+> show #59.4 models
+> show #59.6 models
+> show #59.7 models
+> show #59.10-11,13,15-17,19#!59.9,12,14,18 target m
+> show #59.22-26,28-29,31,33#!59.27,30,32 target m
+> combine #59
+> show #!15 models
+> hide #!15 models
+> show #!18 models
+> hide #!18 models
+> close #18
+> rename #16 FlaA1_all_sym_model
+> rename #16 id #18
+> show #!102 models
+> hide #!103 models
+> hide #!102 models
+> show #!101 models
+> surface dust #101 size 10.7
+> ui tool show "Volume Viewer"
+> volume #101 level 0.13
+> volume #101 level 0.14
+> volume #101 level 0.135
+> ui mousemode right "translate selected models"
+> hide #!59 models
+> show #!59 models
+> hide #!59 models
+> select add #18
+atoms, 88077 bonds, 10824 residues, 1 model selected
+> hide #19 models
+> ui mousemode right "rotate selected models"
+> view matrix models
+> #18,-0.5813,0.8061,-0.11087,164.44,0.8051,0.58955,0.065204,-99.422,0.11792,-0.051357,-0.99169,364.42
+> view matrix models
+> #18,-0.58533,0.80895,-0.054693,153.67,0.80474,0.58787,0.082526,-102.43,0.098911,0.0042919,-0.99509,358.13
+> ui mousemode right "translate selected models"
+> view matrix models
+> #18,-0.58533,0.80895,-0.054693,154.57,0.80474,0.58787,0.082526,-101.83,0.098911,0.0042919,-0.99509,362.59
+> ui tool show "Fit in Map"
+> fitmap #18 inMap #101
+Fit molecule FlaA1_all_sym_model (#18) to map
+cryosparc_P1_J2108_003_volume_map_sharp.mrc (#101) using 86328 atoms
+average map value = 0.08181, steps = 200
+shifted from previous position = 13.6
+rotated from previous position = 11.4 degrees
+atoms outside contour = 65165, contour level = 0.135
+Position of FlaA1_all_sym_model (#18) relative to
+cryosparc_P1_J2108_003_volume_map_sharp.mrc (#101) coordinates:
+Matrix rotation and translation
+-0.44624110 0.89486913 -0.00884012 106.01635968
+.89486097 0.44608714 -0.01517198 -61.73876115
+-0.00963349 -0.01468104 -0.99984583 381.49121526
+Axis 0.52618640 0.85032432 -0.00874248
+Axis point 72.16268381 0.00000000 190.41368449
+Rotation angle (degrees) 179.97327092
+Shift along axis -0.04878221
+> hide #!101 models
+> ui mousemode right select
+> select clear
+> show #!59 models
+> mmaker #59 to #18
+Parameters
+---
+Chain pairing | bb
+Alignment algorithm | Needleman-Wunsch
+Similarity matrix | BLOSUM-62
+SS fraction | 0.3
+Gap open (HH/SS/other) | 18/18/6
+Gap extend | 1
+SS matrix |  |  | H | S | O
+---|---|---|---
+H | 6 | -9 | -6
+S |  | 6 | -6
+O |  |  | 4
+Iteration cutoff | 2
+Matchmaker FlaA1_all_sym_model, chain A (#18) with
+FlaA1_sheath_monox33_real_refine.pdb A, chain A (#59.1), sequence alignment
+score = 1664.5
+RMSD between 328 pruned atom pairs is 0.000 angstroms; (across all 328 pairs:
+.000)
+Matchmaker FlaA1_all_sym_model, chain B (#18) with
+FlaA1_sheath_monox33_real_refine.pdb B, chain B (#59.2), sequence alignment
+score = 1668.7
+RMSD between 328 pruned atom pairs is 0.000 angstroms; (across all 328 pairs:
+.000)
+Matchmaker FlaA1_all_sym_model, chain C (#18) with
+FlaA1_sheath_monox33_real_refine.pdb C, chain C (#59.3), sequence alignment
+score = 1665.1
+RMSD between 328 pruned atom pairs is 0.000 angstroms; (across all 328 pairs:
+.000)
+Matchmaker FlaA1_all_sym_model, chain B (#18) with
+FlaA1_sheath_monox33_real_refine.pdb D, chain D (#59.4), sequence alignment
+score = 1668.7
+RMSD between 325 pruned atom pairs is 0.235 angstroms; (across all 328 pairs:
+.397)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb E, chain E (#59.5), sequence alignment
+score = 1665.1
+RMSD between 328 pruned atom pairs is 0.000 angstroms; (across all 328 pairs:
+.000)
+Matchmaker FlaA1_all_sym_model, chain F (#18) with
+FlaA1_sheath_monox33_real_refine.pdb F, chain F (#59.6), sequence alignment
+score = 1667.5
+RMSD between 328 pruned atom pairs is 0.000 angstroms; (across all 328 pairs:
+.000)
+Matchmaker FlaA1_all_sym_model, chain B (#18) with
+FlaA1_sheath_monox33_real_refine.pdb G, chain G (#59.7), sequence alignment
+score = 1668.7
+RMSD between 323 pruned atom pairs is 0.165 angstroms; (across all 328 pairs:
+.803)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb H, chain H (#59.8), sequence alignment
+score = 1665.1
+RMSD between 327 pruned atom pairs is 0.132 angstroms; (across all 328 pairs:
+.377)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb I, chain I (#59.9), sequence alignment
+score = 1665.1
+RMSD between 325 pruned atom pairs is 0.141 angstroms; (across all 328 pairs:
+.697)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb J, chain J (#59.10), sequence alignment
+score = 1665.1
+RMSD between 322 pruned atom pairs is 0.085 angstroms; (across all 328 pairs:
+.574)
+Matchmaker FlaA1_all_sym_model, chain K (#18) with
+FlaA1_sheath_monox33_real_refine.pdb K, chain K (#59.11), sequence alignment
+score = 1666.9
+RMSD between 328 pruned atom pairs is 0.000 angstroms; (across all 328 pairs:
+.000)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb L, chain L (#59.12), sequence alignment
+score = 1665.1
+RMSD between 324 pruned atom pairs is 0.148 angstroms; (across all 328 pairs:
+.574)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb M, chain M (#59.13), sequence alignment
+score = 1665.1
+RMSD between 326 pruned atom pairs is 0.183 angstroms; (across all 328 pairs:
+.463)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb N, chain N (#59.14), sequence alignment
+score = 1665.1
+RMSD between 324 pruned atom pairs is 0.143 angstroms; (across all 328 pairs:
+.420)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb O, chain O (#59.15), sequence alignment
+score = 1665.1
+RMSD between 326 pruned atom pairs is 0.229 angstroms; (across all 328 pairs:
+.358)
+Matchmaker FlaA1_all_sym_model, chain P (#18) with
+FlaA1_sheath_monox33_real_refine.pdb P, chain P (#59.16), sequence alignment
+score = 1669.3
+RMSD between 328 pruned atom pairs is 0.000 angstroms; (across all 328 pairs:
+.000)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb Q, chain Q (#59.17), sequence alignment
+score = 1665.1
+RMSD between 325 pruned atom pairs is 0.060 angstroms; (across all 328 pairs:
+.336)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb R, chain R (#59.18), sequence alignment
+score = 1665.1
+RMSD between 327 pruned atom pairs is 0.148 angstroms; (across all 328 pairs:
+.392)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb S, chain S (#59.19), sequence alignment
+score = 1665.1
+RMSD between 328 pruned atom pairs is 0.260 angstroms; (across all 328 pairs:
+.260)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb T, chain T (#59.20), sequence alignment
+score = 1665.1
+RMSD between 327 pruned atom pairs is 0.222 angstroms; (across all 328 pairs:
+.400)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb U, chain U (#59.21), sequence alignment
+score = 1665.1
+RMSD between 325 pruned atom pairs is 0.240 angstroms; (across all 328 pairs:
+.780)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb V, chain V (#59.22), sequence alignment
+score = 1665.1
+RMSD between 325 pruned atom pairs is 0.187 angstroms; (across all 328 pairs:
+.329)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb W, chain W (#59.23), sequence alignment
+score = 1665.1
+RMSD between 324 pruned atom pairs is 0.153 angstroms; (across all 328 pairs:
+.322)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb X, chain X (#59.24), sequence alignment
+score = 1665.1
+RMSD between 325 pruned atom pairs is 0.250 angstroms; (across all 328 pairs:
+.526)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb Y, chain Y (#59.25), sequence alignment
+score = 1665.1
+RMSD between 323 pruned atom pairs is 0.153 angstroms; (across all 328 pairs:
+.464)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb Z, chain Z (#59.26), sequence alignment
+score = 1665.1
+RMSD between 326 pruned atom pairs is 0.171 angstroms; (across all 328 pairs:
+.347)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb a, chain a (#59.27), sequence alignment
+score = 1665.1
+RMSD between 325 pruned atom pairs is 0.134 angstroms; (across all 328 pairs:
+.532)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb b, chain b (#59.28), sequence alignment
+score = 1665.1
+RMSD between 325 pruned atom pairs is 0.143 angstroms; (across all 328 pairs:
+.384)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb c, chain c (#59.29), sequence alignment
+score = 1665.1
+RMSD between 325 pruned atom pairs is 0.097 angstroms; (across all 328 pairs:
+.447)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb d, chain d (#59.30), sequence alignment
+score = 1665.1
+RMSD between 323 pruned atom pairs is 0.155 angstroms; (across all 328 pairs:
+.426)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb e, chain e (#59.31), sequence alignment
+score = 1665.1
+RMSD between 321 pruned atom pairs is 0.242 angstroms; (across all 328 pairs:
+.735)
+Matchmaker FlaA1_all_sym_model, chain E (#18) with
+FlaA1_sheath_monox33_real_refine.pdb f, chain f (#59.32), sequence alignment
+score = 1665.1
+RMSD between 326 pruned atom pairs is 0.078 angstroms; (across all 328 pairs:
+.279)
+Matchmaker FlaA1_all_sym_model, chain B (#18) with
+FlaA1_sheath_monox33_real_refine.pdb g, chain g (#59.33), sequence alignment
+score = 1668.7
+RMSD between 323 pruned atom pairs is 0.132 angstroms; (across all 328 pairs:
+.796)
+> hide #!59 models
+> show #!59 models
+> hide #18 models
+> show #18 models
+> hide #18 models
+> close #59
+> split #18
+Split FlaA1_all_sym_model (#18) into 33 models
+Chain information for FlaA1_all_sym_model A #18.1
+---
+Chain | Description
+A | No description available
+Chain information for FlaA1_all_sym_model B #18.2
+---
+Chain | Description
+B | No description available
+Chain information for FlaA1_all_sym_model C #18.3
+---
+Chain | Description
+C | No description available
+Chain information for FlaA1_all_sym_model D #18.4
+---
+Chain | Description
+D | No description available
+Chain information for FlaA1_all_sym_model E #18.5
+---
+Chain | Description
+E | No description available
+Chain information for FlaA1_all_sym_model F #18.6
+---
+Chain | Description
+F | No description available
+Chain information for FlaA1_all_sym_model G #18.7
+---
+Chain | Description
+G | No description available
+Chain information for FlaA1_all_sym_model H #18.8
+---
+Chain | Description
+H | No description available
+Chain information for FlaA1_all_sym_model I #18.9
+---
+Chain | Description
+I | No description available
+Chain information for FlaA1_all_sym_model J #18.10
+---
+Chain | Description
+J | No description available
+Chain information for FlaA1_all_sym_model K #18.11
+---
+Chain | Description
+K | No description available
+Chain information for FlaA1_all_sym_model L #18.12
+---
+Chain | Description
+L | No description available
+Chain information for FlaA1_all_sym_model M #18.13
+---
+Chain | Description
+M | No description available
+Chain information for FlaA1_all_sym_model N #18.14
+---
+Chain | Description
+N | No description available
+Chain information for FlaA1_all_sym_model O #18.15
+---
+Chain | Description
+O | No description available
+Chain information for FlaA1_all_sym_model P #18.16
+---
+Chain | Description
+P | No description available
+Chain information for FlaA1_all_sym_model Q #18.17
+---
+Chain | Description
+Q | No description available
+Chain information for FlaA1_all_sym_model R #18.18
+---
+Chain | Description
+R | No description available
+Chain information for FlaA1_all_sym_model S #18.19
+---
+Chain | Description
+S | No description available
+Chain information for FlaA1_all_sym_model T #18.20
+---
+Chain | Description
+T | No description available
+Chain information for FlaA1_all_sym_model U #18.21
+---
+Chain | Description
+U | No description available
+Chain information for FlaA1_all_sym_model V #18.22
+---
+Chain | Description
+V | No description available
+Chain information for FlaA1_all_sym_model W #18.23
+---
+Chain | Description
+W | No description available
+Chain information for FlaA1_all_sym_model X #18.24
+---
+Chain | Description
+X | No description available
+Chain information for FlaA1_all_sym_model Y #18.25
+---
+Chain | Description
+Y | No description available
+Chain information for FlaA1_all_sym_model Z #18.26
+---
+Chain | Description
+Z | No description available
+Chain information for FlaA1_all_sym_model a #18.27
+---
+Chain | Description
+a | No description available
+Chain information for FlaA1_all_sym_model b #18.28
+---
+Chain | Description
+b | No description available
+Chain information for FlaA1_all_sym_model c #18.29
+---
+Chain | Description
+c | No description available
+Chain information for FlaA1_all_sym_model d #18.30
+---
+Chain | Description
+d | No description available
+Chain information for FlaA1_all_sym_model e #18.31
+---
+Chain | Description
+e | No description available
+Chain information for FlaA1_all_sym_model f #18.32
+---
+Chain | Description
+f | No description available
+Chain information for FlaA1_all_sym_model g #18.33
+---
+Chain | Description
+g | No description available
+> show #18.1-33 target m
+> show #!101 models
+> hide #!101 models
+> show #!100 models
+> hide #!100 models
+> show #!101 models
+> show #!102 models
+> hide #!102 models
+> color #18 #ffb7e4ff models
+> select add #18
+atoms, 88077 bonds, 10824 residues, 34 models selected
+> color #18 #ffacfcff models
+> select subtract #18
+Nothing selected
+> select add #18
+atoms, 88077 bonds, 10824 residues, 34 models selected
+> color #18 #ffb7e4ff models
+> color #18 #a9fab5ff models
+> select clear
+> select #18.10/J:308
+atoms, 6 bonds, 1 residue, 1 model selected
+> select add #18.9/I:312
+atoms, 14 bonds, 2 residues, 2 models selected
+> select add #18.6/F:312
+atoms, 22 bonds, 3 residues, 3 models selected
+> select add #18.12/L:312
+atoms, 30 bonds, 4 residues, 4 models selected
+> hide #18.1 models
+> hide #18.2 models
+> hide #18.3 models
+> hide #18.4 models
+> hide #18.5 models
+> hide #18.7 models
+> hide #18.8 models
+> hide #18.11 models
+> hide #18.13-33 target m
+> select add #18.6
+atoms, 2691 bonds, 331 residues, 4 models selected
+> select add #18.9
+atoms, 5352 bonds, 658 residues, 4 models selected
+> select add #18.10
+atoms, 8015 bonds, 985 residues, 4 models selected
+> select add #18.12
+atoms, 10676 bonds, 1312 residues, 4 models selected
+> ui tool show "Fit in Map"
+> fitmap #18.6 inMap #101
+Fit molecule FlaA1_all_sym_model F (#18.6) to map
+cryosparc_P1_J2108_003_volume_map_sharp.mrc (#101) using 2616 atoms
+average map value = 0.1184, steps = 44
+shifted from previous position = 0.984
+rotated from previous position = 1.19 degrees
+atoms outside contour = 1521, contour level = 0.135
+Position of FlaA1_all_sym_model F (#18.6) relative to
+cryosparc_P1_J2108_003_volume_map_sharp.mrc (#101) coordinates:
+Matrix rotation and translation
+-0.45276283 0.89159691 -0.00779695 107.35982172
+.89160149 0.45280171 0.00418077 -65.66414629
+.00725801 -0.00505887 -0.99996087 375.95149118
+Axis -0.52307245 -0.85228818 0.00025942
+Axis point 72.85585192 0.00000000 188.24376611
+Rotation angle (degrees) 179.49395240
+Shift along axis -0.09465974
+> fitmap #18.9 inMap #101
+Fit molecule FlaA1_all_sym_model I (#18.9) to map
+cryosparc_P1_J2108_003_volume_map_sharp.mrc (#101) using 2616 atoms
+average map value = 0.113, steps = 64
+shifted from previous position = 0.765
+rotated from previous position = 1.15 degrees
+atoms outside contour = 1574, contour level = 0.135
+Position of FlaA1_all_sym_model I (#18.9) relative to
+cryosparc_P1_J2108_003_volume_map_sharp.mrc (#101) coordinates:
+Matrix rotation and translation
+-0.44443230 0.89552366 -0.02274479 108.19986954
+.89576308 0.44453118 -0.00078471 -64.01577788
+.00940802 -0.02072269 -0.99974101 378.33720218
+Axis -0.52699090 -0.84984737 0.00632827
+Axis point 71.84249166 0.00000000 189.53176763
+Rotation angle (degrees) 178.91608150
+Shift along axis -0.22248742
+> fitmap #18.10 inMap #101
+Fit molecule FlaA1_all_sym_model J (#18.10) to map
+cryosparc_P1_J2108_003_volume_map_sharp.mrc (#101) using 2616 atoms
+average map value = 0.1111, steps = 48
+shifted from previous position = 0.923
+rotated from previous position = 2.09 degrees
+atoms outside contour = 1636, contour level = 0.135
+Position of FlaA1_all_sym_model J (#18.10) relative to
+cryosparc_P1_J2108_003_volume_map_sharp.mrc (#101) coordinates:
+Matrix rotation and translation
+-0.43994971 0.89793684 -0.01239720 104.22786034
+.89770469 0.44011936 0.02052641 -66.03318606
+.02388765 -0.00209843 -0.99971246 371.71066248
+Axis -0.52909639 -0.84854436 -0.00542915
+Axis point 70.35919055 0.00000000 186.71943107
+Rotation angle (degrees) 178.77488603
+Shift along axis -1.13257079
+> fitmap #18.12 inMap #101
+Fit molecule FlaA1_all_sym_model L (#18.12) to map
+cryosparc_P1_J2108_003_volume_map_sharp.mrc (#101) using 2616 atoms
+average map value = 0.1168, steps = 64
+shifted from previous position = 1.25
+rotated from previous position = 0.601 degrees
+atoms outside contour = 1543, contour level = 0.135
+Position of FlaA1_all_sym_model L (#18.12) relative to
+cryosparc_P1_J2108_003_volume_map_sharp.mrc (#101) coordinates:
+Matrix rotation and translation
+-0.45288566 0.89146015 -0.01390695 108.60169861
+.89148698 0.45257797 -0.02059685 -61.17142510
+-0.01206731 -0.02172588 -0.99969115 382.85087125
+Axis -0.52302973 -0.85222379 0.01243029
+Axis point 72.95080154 0.00000000 191.01372127
+Rotation angle (degrees) 179.93815984
+Shift along axis 0.08877289
+> hide #!101 models
+> select clear
+> ui tool show Distances
+> ui tool show Contacts
+> contacts distanceOnly 4.0 ignoreHiddenModels true
+distances
+> select subtract #19
+Nothing selected
+> show #19 models
+> color #19 #ffb7e4ff models
+> interfaces #18.6,9-10,12 & ~solvent
+buried areas: #18.6/F #18.10/J 1347, #18.12/L #18.9/I 1325, #18.12/L #18.6/F
+, #18.9/I #18.10/J 740
+> hide #19 models
+> style sel sphere
+Changed 628 atom styles
+> show sel atoms
+> hide sel atoms
+> style sel ball
+Changed 628 atom styles
+> hide (sel-residues & (protein|nucleic)) target a
+> cartoon hide sel-residues
+> show (sel-residues & backbone) target ab
+> color sel byhetero
+> select clear
+> select #18.10/J:331@O
+atom, 1 residue, 1 model selected
+> select add #18.6/F:284@O
+atoms, 2 residues, 2 models selected
+> distance #18.10/J:331@O #18.6/F:284@O
+Distance between FlaA1_all_sym_model J #18.10/J LYS 331 O and
+FlaA1_all_sym_model F #18.6/F ASP 284 O: 1.719Å
+> show #!21 models
+> show #21.1 models
+> select subtract #18.6/F:284@O
+atom, 1 residue, 1 model selected
+> select add #18.6/F:285@N
+atoms, 2 residues, 2 models selected
+> distance #18.10/J:331@O #18.6/F:285@N
+Distance between FlaA1_all_sym_model J #18.10/J LYS 331 O and
+FlaA1_all_sym_model F #18.6/F LYS 285 N: 2.765Å
+> color #18.10 #58ac5aff
+> color sel byhetero
+> select clear
+> ui tool show Contacts
+> hide #18.6,9-10,12 cartoons
+> show #18.6,9-10,12 cartoons
+> hide #18.6,9-10,12 atoms
+> show #18.6,9-10,12 cartoons
+> contacts ignoreHiddenModels true
+contacts
+> show #19 models
+> hide #!21 models
+> hide #!18 models
+> show #18.1-33 target m
+> show #!15 models
+> hide #!15 models
+> hide #!18 models
+> show #!55 models
+> show #!55.1-5 cartoons
+> hide #!55.1-5 atoms
+> show #!7 models
+> show #!18 models
+Drag select of 2876 residues, 1078 pseudobonds
+> select add #18.2
+atoms, 2669 bonds, 1078 pseudobonds, 3072 residues, 24 models selected
+> select add #18.3
+atoms, 5338 bonds, 1078 pseudobonds, 3285 residues, 24 models selected
+> select add #18.5
+atoms, 8007 bonds, 1078 pseudobonds, 3602 residues, 24 models selected
+> select subtract #18.5
+atoms, 5338 bonds, 1078 pseudobonds, 3274 residues, 23 models selected
+> select add #18.6
+atoms, 8007 bonds, 2952 pseudobonds, 3404 residues, 23 models selected
+> select subtract #18.6
+atoms, 5338 bonds, 834 pseudobonds, 3076 residues, 22 models selected
+> select add #18.7
+atoms, 8007 bonds, 834 pseudobonds, 3388 residues, 22 models selected
+> select subtract #18.7
+atoms, 5338 bonds, 834 pseudobonds, 3060 residues, 21 models selected
+> select add #18.8
+atoms, 8007 bonds, 834 pseudobonds, 3376 residues, 21 models selected
+> select subtract #18.8
+atoms, 5338 bonds, 834 pseudobonds, 3048 residues, 20 models selected
+> select add #18.9
+atoms, 8007 bonds, 2513 pseudobonds, 3056 residues, 20 models selected
+> select subtract #18.9
+atoms, 5338 bonds, 406 pseudobonds, 2728 residues, 19 models selected
+> select add #18.10
+atoms, 8007 bonds, 2405 pseudobonds, 2970 residues, 19 models selected
+> select subtract #18.10
+atoms, 5338 bonds, 309 pseudobonds, 2642 residues, 18 models selected
+> select add #18.11
+atoms, 8007 bonds, 309 pseudobonds, 2726 residues, 18 models selected
+> select subtract #18.11
+atoms, 5338 bonds, 309 pseudobonds, 2398 residues, 17 models selected
+> select add #18.12
+atoms, 8007 bonds, 2123 pseudobonds, 2477 residues, 17 models selected
+> select subtract #18.12
+atoms, 5338 bonds, 2149 residues, 15 models selected
+> select add #18.16
+atoms, 8007 bonds, 2466 residues, 15 models selected
+> select subtract #18.16
+atoms, 5338 bonds, 2138 residues, 14 models selected
+> select add #18.20
+atoms, 8007 bonds, 2143 residues, 14 models selected
+> select subtract #18.20
+atoms, 5338 bonds, 1815 residues, 13 models selected
+> select add #18.20
+atoms, 8007 bonds, 2143 residues, 14 models selected
+> select add #18.21
+atoms, 10676 bonds, 2148 residues, 14 models selected
+> select subtract #18.21
+atoms, 8007 bonds, 1820 residues, 13 models selected
+> select add #18.21
+atoms, 10676 bonds, 2148 residues, 14 models selected
+> select add #18.22
+atoms, 13345 bonds, 2332 residues, 14 models selected
+> select add #18.23
+atoms, 16014 bonds, 2395 residues, 14 models selected
+> select add #18.24
+atoms, 18683 bonds, 2430 residues, 14 models selected
+> select add #18.25/Y:26
+atoms, 18690 bonds, 2431 residues, 15 models selected
+> select add #18.25
+atoms, 21352 bonds, 2758 residues, 15 models selected
+> select add #18.26
+atoms, 24021 bonds, 3067 residues, 15 models selected
+> select subtract #18.26
+atoms, 21352 bonds, 2739 residues, 14 models selected
+> select add #18.27
+atoms, 24021 bonds, 3044 residues, 14 models selected
+> select subtract #18.27
+atoms, 21352 bonds, 2716 residues, 13 models selected
+> select add #18.28
+atoms, 24021 bonds, 3041 residues, 13 models selected
+> select subtract #18.28
+atoms, 21352 bonds, 2713 residues, 12 models selected
+> select subtract #18.2
+atoms, 18683 bonds, 2385 residues, 11 models selected
+> select subtract #18.3
+atoms, 16014 bonds, 2057 residues, 10 models selected
+> select subtract #18.20
+atoms, 13345 bonds, 1729 residues, 9 models selected
+> select add #18.20
+atoms, 16014 bonds, 2057 residues, 10 models selected
+> select subtract #18.21
+atoms, 13345 bonds, 1729 residues, 9 models selected
+> select add #18.21
+atoms, 16014 bonds, 2057 residues, 10 models selected
+> select subtract #18.22
+atoms, 13345 bonds, 1729 residues, 9 models selected
+> select add #18.22
+atoms, 16014 bonds, 2057 residues, 10 models selected
+> select subtract #18.23
+atoms, 13345 bonds, 1729 residues, 9 models selected
+> select add #18.23
+atoms, 16014 bonds, 2057 residues, 10 models selected
+> select subtract #18.22
+atoms, 13345 bonds, 1729 residues, 9 models selected
+> select add #18.22
+atoms, 16014 bonds, 2057 residues, 10 models selected
+> select subtract #18.23
+atoms, 13345 bonds, 1729 residues, 9 models selected
+> select add #18.23
+atoms, 16014 bonds, 2057 residues, 10 models selected
+> select subtract #18.24
+atoms, 13345 bonds, 1729 residues, 9 models selected
+> select add #18.24
+atoms, 16014 bonds, 2057 residues, 10 models selected
+> select subtract #18.25
+atoms, 13345 bonds, 1729 residues, 9 models selected
+> select add #18.25
+atoms, 16014 bonds, 2057 residues, 10 models selected
+> select add #7
+atoms, 37366 bonds, 4592 residues, 17 models selected
+> select subtract #7
+atoms, 16014 bonds, 1968 residues, 14 models selected
+> hide sel atoms
+> show sel cartoons
+> hide #!7 models
+> hide #18.20-25 target m
+> show #!56 models
+> hide #!55 models
+> show #!57 models
+> hide #18.1-19,26-33#!56.1-5#!57.1-5 atoms
+> show #18.1-19,26-33#!56.1-5#!57.1-5 cartoons
+> select #18.8/H:311
+atoms, 8 bonds, 1 residue, 1 model selected
+> select clear
+> select #18.8/H:26
+atoms, 7 bonds, 1 residue, 1 model selected
+> select #18.8/H:56
+atoms, 8 bonds, 1 residue, 1 model selected
+> select add #18.5/E:330
+atoms, 16 bonds, 2 residues, 2 models selected
+> select add #18.7/G:326
+atoms, 27 bonds, 3 residues, 3 models selected
+> hide #18.5 models
+> select add #18.5
+atoms, 2688 bonds, 330 residues, 3 models selected
+> select add #18.7
+atoms, 5346 bonds, 657 residues, 3 models selected
+> select add #18.8
+atoms, 8007 bonds, 984 residues, 3 models selected
+> hide #18.7 models
+> hide #18.8 models
+> select subtract #18.5
+atoms, 5338 bonds, 656 residues, 2 models selected
+> select subtract #18.7
+atoms, 2669 bonds, 328 residues, 1 model selected
+> select subtract #18.8
+Nothing selected
+Drag select of 1760 pseudobonds, 3908 residues
+> select clear
+Drag select of 204 residues
+> select clear
+Drag select of 1760 pseudobonds, 5755 residues
+> select clear
+Drag select of 1760 pseudobonds, 4760 residues
+> hide #18.9 models
+> hide #18.10 models
+> hide #18.11 models
+> hide #18.12 models
+> hide #18.13 models
+> hide #18.14 models
+> hide #18.15 models
+> hide #18.16 models
+> hide #18.6 models
+> hide #18.4 models
+> hide #18.3 models
+> hide #18.2 models
+> hide #18.1 models
+> hide #18.29 models
+> hide #18.30 models
+> hide #18.31 models
+> hide #18.32 models
+> hide #18.33 models
+> select clear
+> ui tool show Contacts
+> contacts distanceOnly 4.0 ignoreHiddenModels true
+distances
+> hide #!56.3 models
+> select add #18.19/S:94
+atoms, 4 bonds, 1 residue, 1 model selected
+> select add #56.5/E:73
+atoms, 14 bonds, 2 residues, 2 models selected
+> hide #!57 models
+> hide #!56.4 models
+> hide #!56.2 models
+> hide #!56.1 models
+> hide #18.18 models
+> hide #18.17 models
+> hide #18.26 models
+> hide #18.27 models
+> hide #18.28 models
+> select #56.5/E:59
+atoms, 3 bonds, 1 residue, 1 model selected
+> select add #56.5/E:60
+atoms, 9 bonds, 2 residues, 2 models selected
+> select add #56.5/E:58
+atoms, 17 bonds, 3 residues, 2 models selected
+> select add #56.5/E:57
+atoms, 23 bonds, 1 pseudobond, 4 residues, 3 models selected
+> select add #18.19/S:327
+atoms, 30 bonds, 5 residues, 3 models selected
+> select add #18.19/S:328
+atoms, 38 bonds, 6 residues, 3 models selected
+> select add #18.19/S:331
+atoms, 46 bonds, 7 residues, 3 models selected
+> select add #18.19/S:330
+atoms, 54 bonds, 8 residues, 3 models selected
+> select add #18.19/S:329
+atoms, 62 bonds, 9 residues, 3 models selected
+> select subtract #18.19/S:331
+atoms, 54 bonds, 8 residues, 3 models selected
+> select add #18.19/S:331
+atoms, 62 bonds, 9 residues, 3 models selected
+> select add #18.19/S:332
+atoms, 69 bonds, 10 residues, 3 models selected
+> hide (#18.19#!56.5 & sel-residues & (protein|nucleic)) target a
+> cartoon hide (#18.19#!56.5 & sel-residues)
+> show (#18.19#!56.5 & sel-residues & backbone) target ab
+> style sel ball
+Changed 79 atom styles
+> select add #56.5/E:56
+atoms, 77 bonds, 11 residues, 3 models selected
+> select add #18.19/S:333
+atoms, 81 bonds, 12 residues, 3 models selected
+> hide (#18.19#!56.5 & sel-residues & (protein|nucleic)) target a
+> cartoon hide (#18.19#!56.5 & sel-residues)
+> show (#18.19#!56.5 & sel-residues & backbone) target ab
+> style sel ball
+Changed 93 atom styles
+> select clear
+> select #56.5/E:63
+atoms, 4 bonds, 1 residue, 1 model selected
+> select add #18.19/S:314
+atoms, 12 bonds, 2 residues, 3 models selected
+Alignment identifier is 56.5/E
+Alignment identifier is 18.19/S
+> select clear
+> select #56.5/E:59@O
+atom, 1 residue, 1 model selected
+> select add #56.5/E:59@CA
+atoms, 1 residue, 2 models selected
+> select add #56.5/E:58@O
+atoms, 2 residues, 2 models selected
+> select add #56.5/E:59@N
+atoms, 2 residues, 2 models selected
+> select add #56.5/E:58@C
+atoms, 1 bond, 2 residues, 2 models selected
+> select add #18.19/S:331@O
+atoms, 3 residues, 3 models selected
+> select add #18.19/S:331@C
+atoms, 3 residues, 3 models selected
+> select add #18.19/S:331@CA
+atoms, 3 residues, 3 models selected
+> select add #18.19/S:330@O
+atoms, 1 pseudobond, 4 residues, 4 models selected
+> select add #18.19/S:330@C
+atoms, 1 pseudobond, 4 residues, 4 models selected
+> select #56.5/E:58
+atoms, 8 bonds, 1 residue, 1 model selected
+> select #56.5/E:58-59
+atoms, 12 bonds, 2 residues, 1 model selected
+> select clear
+> select #56.5/E:58
+atoms, 8 bonds, 1 residue, 1 model selected
+> select #56.5/E:58-59
+atoms, 12 bonds, 2 residues, 1 model selected
+> color (#!56.5 & sel) byhetero
+> select clear
+> select #18.19/S:331@CA
+atom, 1 residue, 1 model selected
+> select add #18.19/S:331@N
+atoms, 1 residue, 1 model selected
+> select clear
+> select add #18.19/S:331@O
+atom, 1 residue, 1 model selected
+> select add #18.19/S:331@CA
+atoms, 1 residue, 1 model selected
+> select #18.19/S:330
+atoms, 8 bonds, 1 residue, 1 model selected
+> select #18.19/S:330-331
+atoms, 17 bonds, 1 pseudobond, 2 residues, 2 models selected
+> color (#18.19 & sel) byhetero
+> select clear
+> select #56.5/E:59@O
+atom, 1 residue, 1 model selected
+> select add #18.19/S:331@O
+atoms, 2 residues, 3 models selected
+> distance #56.5/E:59@O #18.19/S:331@O
+Distance between Asym_part_2 E #56.5/E GLY 59 O and FlaA1_all_sym_model S
+#18.19/S LYS 331 O: 3.945Å
+> show #!21 models
+> select add #18.19/S:331@C
+atoms, 1 bond, 2 residues, 3 models selected
+Exactly two atoms must be selected!
+> select subtract #18.19/S:331@O
+atoms, 2 residues, 3 models selected
+> distance #56.5/E:59@O #18.19/S:331@C
+Distance between Asym_part_2 E #56.5/E GLY 59 O and FlaA1_all_sym_model S
+#18.19/S LYS 331 C: 3.850Å
+> select subtract #18.19/S:331@C
+atom, 1 residue, 2 models selected
+> select add #18.19/S:331@CA
+atoms, 2 residues, 3 models selected
+> distance #56.5/E:59@O #18.19/S:331@CA
+Distance between Asym_part_2 E #56.5/E GLY 59 O and FlaA1_all_sym_model S
+#18.19/S LYS 331 CA: 3.348Å
+> select clear
+> select add #56.5/E:59@C
+atom, 1 residue, 1 model selected
+> select add #18.19/S:331@CA
+atoms, 2 residues, 3 models selected
+> distance #56.5/E:59@C #18.19/S:331@CA
+Distance between Asym_part_2 E #56.5/E GLY 59 C and FlaA1_all_sym_model S
+#18.19/S LYS 331 CA: 3.105Å
+> select subtract #56.5/E:59@C
+atom, 1 residue, 2 models selected
+> select add #56.5/E:59@CA
+atoms, 2 residues, 2 models selected
+> distance #18.19/S:331@CA #56.5/E:59@CA
+Distance between FlaA1_all_sym_model S #18.19/S LYS 331 CA and Asym_part_2 E
+#56.5/E GLY 59 CA: 3.044Å
+> select subtract #56.5/E:59@CA
+atom, 1 residue, 2 models selected
+> select add #56.5/E:58@O
+atoms, 1 pseudobond, 2 residues, 3 models selected
+> select subtract #56.5/E:58@O
+atom, 1 pseudobond, 1 residue, 3 models selected
+> select add #56.5/E:58@O
+atoms, 1 pseudobond, 2 residues, 3 models selected
+> select clear
+> select #18.19/S:331@CA
+atom, 1 residue, 1 model selected
+> select add #56.5/E:58@O
+atoms, 2 residues, 2 models selected
+> distance #18.19/S:331@CA #56.5/E:58@O
+Distance between FlaA1_all_sym_model S #18.19/S LYS 331 CA and Asym_part_2 E
+#56.5/E GLU 58 O: 2.651Å
+> select subtract #56.5/E:58@O
+atom, 1 residue, 2 models selected
+> select add #56.5/E:59@N
+atoms, 2 residues, 2 models selected
+> distance #18.19/S:331@CA #56.5/E:59@N
+Distance between FlaA1_all_sym_model S #18.19/S LYS 331 CA and Asym_part_2 E
+#56.5/E GLY 59 N: 3.729Å
+> select clear
+> select #56.5/E:58@C
+atom, 1 residue, 1 model selected
+> select add #18.19/S:331@CA
+atoms, 2 residues, 3 models selected
+> distance #56.5/E:58@C #18.19/S:331@CA
+Distance between Asym_part_2 E #56.5/E GLU 58 C and FlaA1_all_sym_model S
+#18.19/S LYS 331 CA: 3.566Å
+> select subtract #18.19/S:331@CA
+atom, 1 residue, 2 models selected
+> hide #21.1 models
+> select #56.5/E:59@CA
+atom, 1 residue, 1 model selected
+> select add #18.19/S:327@O
+atoms, 2 residues, 3 models selected
+> distance #56.5/E:59@CA #18.19/S:327@O
+Distance between Asym_part_2 E #56.5/E GLY 59 CA and FlaA1_all_sym_model S
+#18.19/S LEU 327 O: 3.870Å
+> select clear
+> select #56.5/E:59@CA
+atom, 1 residue, 1 model selected
+> select add #18.19/S:331@N
+atoms, 2 residues, 3 models selected
+> distance #56.5/E:59@CA #18.19/S:331@N
+Distance between Asym_part_2 E #56.5/E GLY 59 CA and FlaA1_all_sym_model S
+#18.19/S LYS 331 N: 3.621Å
+> select subtract #56.5/E:59@CA
+atom, 1 residue, 2 models selected
+> select add #56.5/E:58@C
+atoms, 2 residues, 2 models selected
+> distance #18.19/S:331@N #56.5/E:58@C
+Distance between FlaA1_all_sym_model S #18.19/S LYS 331 N and Asym_part_2 E
+#56.5/E GLU 58 C: 3.690Å
+> select add #56.5/E:58@CA
+atoms, 2 residues, 3 models selected
+> select #18.19/S:331@N
+atom, 1 residue, 1 model selected
+> select add #56.5/E:58@O
+atoms, 2 residues, 2 models selected
+> distance #18.19/S:331@N #56.5/E:58@O
+Distance between FlaA1_all_sym_model S #18.19/S LYS 331 N and Asym_part_2 E
+#56.5/E GLU 58 O: 2.768Å
+> select subtract #18.19/S:331@N
+atom, 1 residue, 2 models selected
+> select add #18.19/S:330@C
+atoms, 2 residues, 3 models selected
+> distance #56.5/E:58@O #18.19/S:330@C
+Distance between Asym_part_2 E #56.5/E GLU 58 O and FlaA1_all_sym_model S
+#18.19/S GLU 330 C: 3.259Å
+> select subtract #18.19/S:330@C
+atom, 1 residue, 2 models selected
+> select add #18.19/S:330@O
+atoms, 2 residues, 3 models selected
+> distance #56.5/E:58@O #18.19/S:330@O
+Distance between Asym_part_2 E #56.5/E GLU 58 O and FlaA1_all_sym_model S
+#18.19/S GLU 330 O: 3.622Å
+> select #56.5/E:60@N
+atom, 1 residue, 1 model selected
+> select add #18.19/S:331@CA
+atoms, 2 residues, 3 models selected
+> distance #56.5/E:60@N #18.19/S:331@CA
+Distance between Asym_part_2 E #56.5/E THR 60 N and FlaA1_all_sym_model S
+#18.19/S LYS 331 CA: 3.731Å
+> hide #19 models
+> select clear
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/4-FlaA1_FlaA3_inter.png
+> width 1625 height 1210 supersample 3 transparentBackground true
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/4-FlaA1_FlaA3_complex.png
+> width 1625 height 1210 supersample 3 transparentBackground true
+> select #18.19/S:327@O
+atom, 1 residue, 1 model selected
+> select add #18.19/S:331@N
+atoms, 2 residues, 1 model selected
+> select add #18.19/S:330@O
+atoms, 3 residues, 1 model selected
+> select add #18.19/S:331@CA
+atoms, 3 residues, 1 model selected
+> select add #18.19/S:331@O
+atoms, 3 residues, 1 model selected
+> select add #18.19/S:331@C
+atoms, 3 residues, 1 model selected
+> select clear
+> select #56.5/E:58@C
+atom, 1 residue, 1 model selected
+> select add #56.5/E:59@N
+atoms, 2 residues, 2 models selected
+> select add #56.5/E:59@CA
+atoms, 2 residues, 2 models selected
+> select add #56.5/E:59@C
+atoms, 2 residues, 2 models selected
+> select add #56.5/E:59@O
+atoms, 2 residues, 2 models selected
+> select add #56.5/E:58@O
+atoms, 2 residues, 2 models selected
+> select clear
+> show #!56.4 models
+> show #!56.1 models
+> show #18.19#!56.1,4-5 cartoons
+> hide #18.19#!56.1,4-5 atoms
+> hide #!21 models
+> hide #!18 models
+> ui tool show Contacts
+> contacts distanceOnly 4.0 ignoreHiddenModels true
+distances
+> show #19 models
+> show #3 models
+> hide #3 models
+> show #!2 models
+> hide #!2 models
+> ui tool show "Find Cavities"
+pyKVFinder module not installed; fetching from PyPi repository...
+Errors may have occurred when running pip:
+pip standard error:
+\---
+ERROR: pip's dependency resolver does not currently take into account all the
+packages that are installed. This behaviour is the source of the following
+dependency conflicts.
+chimerax-bundlebuilder 1.4.0 requires numpy==1.26.4, but you have numpy 2.2.6
+which is incompatible.
+nptyping 2.5.0 requires numpy=1.20.0; python_version >= "3.8", but you
+have numpy 2.2.6 which is incompatible.
+\---
+pip standard output:
+\---
+\---
+> kvfinder #56.1,4-5
+cavities found for Asym_part_2 A #56.1
+Asym_part_2 A Cavities
+---
+ID |  | Volume | Area | Points
+.1.2.4 |  | 301.97 | 202.77 | 1398
+.1.2.7 |  | 67.61 | 83.82 | 313
+.1.2.3 |  | 29.81 | 37.89 | 138
+.1.2.5 |  | 18.36 | 31.06 | 85
+.1.2.1 |  | 17.28 | 36.68 | 80
+.1.2.6 |  | 9.29 | 15.23 | 43
+.1.2.2 |  | 5.62 | 11.48 | 26
+Populating font family aliases took 118 ms. Replace uses of missing font
+family "Times" with one that exists to avoid this cost.
+cavities found for Asym_part_2 D #56.4
+Asym_part_2 D Cavities
+---
+ID |  | Volume | Area | Points
+.4.2.2 |  | 288.36 | 198.24 | 1335
+.4.2.1 |  | 59.62 | 75.31 | 276
+.4.2.4 |  | 24.84 | 29.18 | 115
+.4.2.3 |  | 16.63 | 22.67 | 77
+.4.2.5 |  | 5.18 | 10.2 | 24
+cavities found for Asym_part_2 E #56.5
+Asym_part_2 E Cavities
+---
+ID |  | Volume | Area | Points
+.5.2.3 |  | 52.06 | 67.91 | 241
+.5.2.9 |  | 34.78 | 41.19 | 161
+.5.2.11 |  | 31.32 | 43.64 | 145
+.5.2.2 |  | 19.66 | 31.58 | 91
+.5.2.5 |  | 16.42 | 28.99 | 76
+.5.2.6 |  | 14.26 | 27.91 | 66
+.5.2.4 |  | 9.94 | 20.08 | 46
+.5.2.7 |  | 9.72 | 20.35 | 45
+.5.2.1 |  | 9.07 | 17.52 | 42
+.5.2.12 |  | 8.64 | 19.18 | 40
+.5.2.10 |  | 7.56 | 16.2 | 35
+.5.2.8 |  | 5.18 | 9.17 | 24
+> show #56.1.2.1-7#56.4.2.1-5#56.5.2.1-12#!56.1,4-5 surfaces
+> hide #56.1.2.1-7#56.4.2.1-5#56.5.2.1-12#!56.1,4-5 surfaces
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Pallidum_Uconn/250627Tp_in_vitro_SPA/cryosparc_P1_J2127_014_volume_mask_refine.mrc
+Opened cryosparc_P1_J2127_014_volume_mask_refine.mrc as #16, grid size
+,512,512, pixel 0.534, shown at level 1, step 2, values float32
+> hide #19 models
+> hide #!56 models
+Can not turn on clipping since there are no models to clip
+> view
+> hide #!16 models
+> show #!16 models
+> volume #16 step 1
+> volume #16 level 0.914
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Pallidum_Uconn/250627Tp_in_vitro_SPA/Tp_mask_cylinder.mrc
+> models #16
+> close #16
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Pallidum_Uconn/250627Tp_in_vitro_SPA/Tp_mask_cylinder.mrc
+Opened Tp_mask_cylinder.mrc as #16, grid size 512,512,512, pixel 0.534, shown
+at level 1, step 2, values float32
+> volume #16 step 1
+> volume #16 level 1
+> volume #16 level 0.1637
+> close #16
+> show #!56 models
+> hide #56.1.2.1-7#56.4.2.1-5#56.5.2.1-12#!56.1,4-5 surfaces
+> show #56.1.2.1-7#56.4.2.1-5#56.5.2.1-12#!56.1,4-5 cartoons
+> hide #56.1.2.1-7#56.4.2.1-5#56.5.2.1-12#!56.1,4-5 atoms
+> ui tool show ViewDockX
+No suitable models found for ViewDockX
+> ui tool show Contacts
+> contacts distanceOnly 4.0 ignoreHiddenModels true
+distances
+> show #19 models
+> show #56.1.2.1-7#56.4.2.1-5#56.5.2.1-12#!56.1,4-5 surfaces
+> hide #19 models
+> hide #!56.5 models
+> mlp #56.1.2.1-7#56.4.2.1-5#!56.1,4
+Map values for surface "Asym_part_2 D_D SES surface": minimum -27.89, mean
+-4.555, maximum 22.89
+Map values for surface "Asym_part_2 A_A SES surface": minimum -28.01, mean
+-4.585, maximum 22.37
+To also show corresponding color key, enter the above mlp command and add key
+true
+> coulombic #56.1.2.1-7#56.4.2.1-5#!56.1,4
+Using Amber 20 recommended default charges and atom types for standard
+residues
+Assigning partial charges to residue CAV[Z0] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z2] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z3] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z4] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z5] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z6] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z7] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z8] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z9] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z10] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z11] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z12] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z13] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z14] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z15] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z16] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z17] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z18] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z19] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z20] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z21] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z22] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z23] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z24] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z25] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z26] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z27] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z28] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z29] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z30] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z31] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z32] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z33] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z34] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z35] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z36] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z37] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z38] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z39] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z40] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z41] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z42] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z43] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z44] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z45] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z46] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z47] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z48] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z49] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z50] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z51] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z52] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z53] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z54] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z55] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z56] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z57] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z58] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z59] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z60] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z61] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z62] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z63] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z64] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z65] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z66] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z67] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z68] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z69] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z70] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z71] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z72] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z73] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z74] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z75] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z76] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z77] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z78] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z79] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z80] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z81] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z82] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z83] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z84] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z85] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z86] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z87] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z88] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z89] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z90] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z91] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z92] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z93] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z94] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z95] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z96] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z97] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z98] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z99] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z100] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z101] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z102] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z103] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z104] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z105] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z106] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z107] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z108] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z109] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z110] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z111] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z112] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z113] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z114] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z115] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z116] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z117] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z118] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z119] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z120] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z121] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z122] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z123] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z124] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z125] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z126] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z127] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z128] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z129] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z130] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z131] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z132] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z133] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z134] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z135] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z136] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z137] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z138] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z139] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z140] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z141] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z142] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z143] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z144] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z145] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z146] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z147] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z148] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z149] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z150] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z151] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z152] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z153] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z154] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z155] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z156] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z157] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z158] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z159] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z160] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z161] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z162] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z163] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z164] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z165] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z166] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z167] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z168] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z169] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z170] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z171] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z172] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z173] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z174] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z175] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z176] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z177] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z178] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z179] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z180] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z181] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z182] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z183] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z184] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z185] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z186] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z187] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z188] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z189] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z190] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z191] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z192] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z193] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z194] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z195] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z196] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z197] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z198] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z199] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z200] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z201] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z202] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z203] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z204] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z205] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z206] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z207] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z208] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z209] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z210] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z211] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z212] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z213] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z214] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z215] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z216] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z217] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z218] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z219] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z220] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z221] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z222] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z223] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z224] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z225] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z226] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z227] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z228] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z229] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z230] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z231] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z232] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z233] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z234] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z235] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z236] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z237] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z238] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z239] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z240] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z241] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z242] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z243] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z244] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z245] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z246] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z247] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z248] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z249] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z250] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z251] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z252] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z253] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z254] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z255] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z256] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z257] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z258] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z259] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z260] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z261] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z262] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z263] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z264] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z265] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z266] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z267] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z268] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z269] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z270] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z271] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z272] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z273] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z274] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z275] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z276] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z277] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z278] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z279] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z280] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z281] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z282] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z283] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z284] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z285] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z286] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z287] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z288] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z289] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z290] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z291] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z292] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z293] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z294] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z295] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z296] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z297] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z298] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z299] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z300] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z301] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z302] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z303] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z304] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z305] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z306] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z307] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z308] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z309] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z310] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z311] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z312] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Using Amber 20 recommended default charges and atom types for standard
+residues
+Assigning partial charges to residue CAV[Z0] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z2] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z3] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z4] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z5] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z6] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z7] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z8] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z9] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z10] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z11] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z12] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z13] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z14] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z15] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z16] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z17] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z18] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z19] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z20] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z21] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z22] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z23] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z24] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z25] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z26] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z27] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z28] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z29] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z30] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z31] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z32] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z33] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z34] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z35] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z36] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z37] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z38] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z39] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z40] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z41] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z42] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z43] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z44] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z45] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z46] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z47] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z48] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z49] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z50] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z51] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z52] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z53] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z54] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z55] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z56] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z57] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z58] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z59] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z60] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z61] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z62] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z63] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z64] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z65] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z66] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z67] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z68] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z69] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z70] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z71] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z72] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z73] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z74] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z75] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z76] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z77] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z78] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z79] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z80] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z81] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z82] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z83] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z84] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Using Amber 20 recommended default charges and atom types for standard
+residues
+Assigning partial charges to residue CAV[Z0] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z2] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z3] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z4] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z5] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z6] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z7] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z8] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z9] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z10] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z11] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z12] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z13] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z14] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z15] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z16] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z17] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z18] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z19] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z20] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z21] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z22] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z23] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z24] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z25] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z26] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z27] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z28] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z29] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z30] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z31] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z32] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z33] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z34] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z35] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z36] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z37] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z38] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z39] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z40] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z41] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z42] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z43] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z44] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z45] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z46] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z47] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z48] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z49] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z50] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z51] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z52] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z53] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z54] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z55] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z56] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z57] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z58] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z59] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z60] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z61] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z62] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z63] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z64] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z65] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z66] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z67] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z68] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z69] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z70] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z71] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z72] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z73] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z74] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z75] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z76] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z77] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z78] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z79] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z80] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z81] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z82] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z83] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z84] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z85] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z86] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z87] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z88] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z89] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z90] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z91] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z92] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z93] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z94] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z95] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z96] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z97] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z98] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z99] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z100] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z101] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z102] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z103] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z104] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z105] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z106] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z107] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z108] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z109] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z110] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z111] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z112] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z113] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z114] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z115] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z116] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z117] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z118] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z119] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z120] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z121] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z122] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z123] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z124] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z125] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z126] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z127] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z128] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z129] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z130] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z131] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z132] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z133] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z134] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z135] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z136] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z137] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z138] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z139] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z140] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z141] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z142] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z143] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z144] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z145] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z146] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z147] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z148] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z149] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z150] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z151] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z152] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z153] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z154] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z155] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z156] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z157] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z158] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z159] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z160] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z161] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z162] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z163] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z164] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z165] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z166] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z167] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z168] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z169] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z170] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z171] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z172] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z173] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z174] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z175] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z176] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z177] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z178] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z179] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z180] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z181] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z182] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z183] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z184] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z185] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z186] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z187] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z188] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z189] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z190] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z191] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z192] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z193] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z194] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z195] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z196] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z197] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z198] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z199] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z200] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z201] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z202] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z203] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z204] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z205] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z206] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z207] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z208] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z209] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z210] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z211] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z212] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z213] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z214] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z215] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z216] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z217] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z218] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z219] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z220] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z221] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z222] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z223] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z224] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z225] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z226] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z227] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z228] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z229] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z230] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z231] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z232] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z233] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z234] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z235] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z236] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z237] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z238] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z239] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z240] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z241] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z242] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z243] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z244] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z245] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z246] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z247] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z248] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z249] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z250] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z251] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z252] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z253] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z254] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z255] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z256] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z257] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z258] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z259] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z260] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z261] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z262] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z263] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z264] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z265] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z266] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z267] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z268] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z269] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z270] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z271] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z272] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z273] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z274] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z275] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z276] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z277] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z278] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z279] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z280] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z281] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z282] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z283] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z284] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z285] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z286] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z287] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z288] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z289] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z290] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z291] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z292] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z293] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z294] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z295] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z296] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z297] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z298] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z299] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z300] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z301] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z302] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z303] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z304] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z305] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z306] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z307] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z308] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z309] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z310] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z311] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z312] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z313] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z314] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z315] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z316] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z317] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z318] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z319] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z320] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z321] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z322] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z323] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z324] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z325] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z326] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z327] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z328] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z329] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z330] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z331] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z332] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z333] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z334] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z335] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z336] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z337] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z338] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z339] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z340] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z341] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z342] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z343] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z344] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z345] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z346] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z347] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z348] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z349] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z350] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z351] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z352] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z353] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z354] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z355] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z356] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z357] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z358] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z359] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z360] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z361] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z362] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z363] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z364] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z365] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z366] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z367] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z368] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z369] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z370] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z371] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z372] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z373] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z374] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z375] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z376] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z377] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z378] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z379] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z380] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z381] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z382] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z383] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z384] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z385] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z386] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z387] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z388] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z389] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z390] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z391] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z392] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z393] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z394] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z395] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z396] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z397] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z398] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z399] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z400] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z401] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z402] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z403] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z404] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z405] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z406] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z407] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z408] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z409] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z410] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z411] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z412] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z413] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z414] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z415] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z416] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z417] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z418] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z419] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z420] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z421] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z422] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z423] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z424] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z425] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z426] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z427] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z428] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z429] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z430] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z431] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z432] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z433] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z434] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z435] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z436] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z437] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z438] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z439] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z440] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z441] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z442] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z443] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z444] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z445] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z446] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z447] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z448] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z449] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z450] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z451] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z452] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z453] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z454] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z455] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z456] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z457] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z458] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z459] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z460] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z461] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z462] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z463] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z464] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z465] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z466] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z467] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z468] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z469] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z470] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z471] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z472] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z473] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z474] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z475] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z476] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z477] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z478] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z479] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z480] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z481] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z482] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z483] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z484] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z485] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z486] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z487] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z488] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z489] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z490] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z491] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z492] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z493] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z494] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z495] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z496] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z497] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z498] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z499] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z500] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z501] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z502] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z503] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z504] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z505] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z506] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z507] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z508] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z509] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z510] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z511] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z512] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z513] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z514] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z515] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z516] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z517] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z518] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z519] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z520] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z521] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z522] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z523] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z524] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z525] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z526] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z527] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z528] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z529] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z530] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z531] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z532] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z533] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z534] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z535] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z536] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z537] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z538] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z539] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z540] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z541] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z542] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z543] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z544] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z545] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z546] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z547] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z548] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z549] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z550] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z551] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z552] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z553] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z554] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z555] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z556] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z557] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z558] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z559] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z560] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z561] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z562] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z563] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z564] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z565] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z566] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z567] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z568] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z569] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z570] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z571] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z572] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z573] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z574] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z575] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z576] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z577] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z578] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z579] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z580] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z581] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z582] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z583] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z584] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z585] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z586] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z587] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z588] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z589] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z590] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z591] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z592] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z593] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z594] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z595] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z596] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z597] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z598] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z599] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z600] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z601] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z602] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z603] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z604] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z605] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z606] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z607] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z608] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z609] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z610] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z611] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z612] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z613] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z614] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z615] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z616] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z617] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z618] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z619] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z620] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z621] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z622] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z623] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z624] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z625] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z626] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z627] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z628] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z629] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z630] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z631] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z632] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z633] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z634] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z635] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z636] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z637] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z638] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z639] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z640] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z641] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z642] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z643] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z644] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z645] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z646] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z647] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z648] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z649] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z650] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z651] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z652] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z653] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z654] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z655] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z656] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z657] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z658] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z659] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z660] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z661] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z662] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z663] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z664] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z665] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z666] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z667] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z668] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z669] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z670] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z671] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z672] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z673] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z674] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z675] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z676] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z677] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z678] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z679] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z680] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z681] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z682] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z683] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z684] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z685] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z686] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z687] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z688] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z689] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z690] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z691] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z692] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z693] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z694] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z695] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z696] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z697] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z698] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z699] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z700] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z701] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z702] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z703] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z704] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z705] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z706] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z707] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z708] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z709] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z710] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z711] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z712] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z713] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z714] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z715] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z716] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z717] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z718] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z719] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z720] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z721] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z722] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z723] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z724] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z725] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z726] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z727] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z728] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z729] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z730] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z731] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z732] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z733] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z734] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z735] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z736] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z737] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z738] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z739] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z740] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z741] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z742] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z743] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z744] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z745] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z746] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z747] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z748] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z749] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z750] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z751] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z752] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z753] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z754] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z755] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z756] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z757] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z758] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z759] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z760] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z761] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z762] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z763] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z764] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z765] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z766] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z767] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z768] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z769] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z770] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z771] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z772] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z773] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z774] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z775] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z776] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z777] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z778] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z779] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z780] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z781] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z782] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z783] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z784] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z785] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z786] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z787] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z788] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z789] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z790] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z791] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z792] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z793] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z794] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z795] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z796] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z797] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z798] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z799] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z800] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z801] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z802] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z803] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z804] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z805] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z806] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z807] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z808] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z809] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z810] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z811] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z812] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z813] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z814] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z815] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z816] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z817] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z818] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z819] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z820] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z821] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z822] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z823] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z824] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z825] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z826] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z827] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z828] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z829] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z830] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z831] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z832] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z833] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z834] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z835] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z836] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z837] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z838] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z839] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z840] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z841] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z842] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z843] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z844] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z845] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z846] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z847] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z848] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z849] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z850] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z851] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z852] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z853] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z854] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z855] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z856] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z857] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z858] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z859] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z860] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z861] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z862] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z863] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z864] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z865] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z866] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z867] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z868] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z869] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z870] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z871] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z872] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z873] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z874] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z875] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z876] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z877] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z878] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z879] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z880] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z881] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z882] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z883] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z884] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z885] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z886] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z887] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z888] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z889] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z890] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z891] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z892] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z893] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z894] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z895] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z896] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z897] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z898] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z899] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z900] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z901] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z902] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z903] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z904] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z905] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z906] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z907] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z908] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z909] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z910] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z911] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z912] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z913] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z914] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z915] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z916] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z917] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z918] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z919] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z920] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z921] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z922] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z923] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z924] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z925] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z926] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z927] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z928] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z929] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z930] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z931] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z932] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z933] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z934] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z935] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z936] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z937] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z938] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z939] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z940] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z941] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z942] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z943] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z944] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z945] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z946] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z947] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z948] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z949] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z950] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z951] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z952] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z953] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z954] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z955] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z956] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z957] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z958] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z959] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z960] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z961] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z962] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z963] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z964] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z965] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z966] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z967] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z968] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z969] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z970] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z971] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z972] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z973] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z974] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z975] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z976] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z977] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z978] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z979] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z980] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z981] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z982] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z983] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z984] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z985] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z986] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z987] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z988] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z989] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z990] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z991] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z992] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z993] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z994] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z995] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z996] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z997] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z998] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z999] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1000] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1001] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1002] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1003] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1004] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1005] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1006] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1007] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1008] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1009] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1010] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1011] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1012] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1013] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1014] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1015] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1016] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1017] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1018] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1019] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1020] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1021] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1022] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1023] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1024] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1025] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1026] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1027] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1028] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1029] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1030] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1031] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1032] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1033] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1034] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1035] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1036] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1037] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1038] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1039] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1040] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1041] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1042] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1043] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1044] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1045] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1046] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1047] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1048] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1049] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1050] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1051] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1052] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1053] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1054] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1055] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1056] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1057] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1058] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1059] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1060] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1061] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1062] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1063] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1064] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1065] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1066] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1067] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1068] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1069] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1070] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1071] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1072] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1073] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1074] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1075] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1076] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1077] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1078] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1079] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1080] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1081] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1082] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1083] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1084] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1085] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1086] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1087] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1088] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1089] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1090] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1091] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1092] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1093] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1094] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1095] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1096] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1097] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1098] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1099] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1100] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1101] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1102] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1103] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1104] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1105] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1106] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1107] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1108] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1109] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1110] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1111] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1112] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1113] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1114] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1115] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1116] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1117] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1118] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1119] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1120] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1121] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1122] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1123] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1124] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1125] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1126] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1127] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1128] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1129] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1130] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1131] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1132] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1133] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1134] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1135] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1136] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1137] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1138] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1139] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1140] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1141] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1142] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1143] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1144] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1145] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1146] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1147] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1148] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1149] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1150] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1151] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1152] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1153] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1154] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1155] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1156] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1157] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1158] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1159] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1160] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1161] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1162] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1163] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1164] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1165] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1166] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1167] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1168] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1169] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1170] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1171] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1172] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1173] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1174] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1175] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1176] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1177] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1178] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1179] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1180] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1181] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1182] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1183] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1184] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1185] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1186] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1187] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1188] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1189] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1190] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1191] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1192] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1193] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1194] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1195] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1196] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1197] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1198] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1199] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1200] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1201] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1202] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1203] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1204] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1205] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1206] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1207] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1208] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1209] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1210] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1211] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1212] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1213] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1214] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1215] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1216] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1217] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1218] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1219] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1220] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1221] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1222] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1223] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1224] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1225] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1226] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1227] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1228] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1229] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1230] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1231] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1232] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1233] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1234] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1235] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1236] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1237] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1238] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1239] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1240] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1241] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1242] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1243] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1244] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1245] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1246] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1247] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1248] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1249] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1250] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1251] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1252] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1253] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1254] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1255] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1256] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1257] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1258] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1259] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1260] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1261] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1262] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1263] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1264] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1265] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1266] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1267] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1268] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1269] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1270] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1271] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1272] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1273] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1274] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1275] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1276] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1277] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1278] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1279] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1280] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1281] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1282] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1283] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1284] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1285] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1286] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1287] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1288] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1289] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1290] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1291] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1292] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1293] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1294] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1295] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1296] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1297] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1298] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1299] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1300] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1301] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1302] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1303] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1304] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1305] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1306] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1307] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1308] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1309] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1310] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1311] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1312] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1313] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1314] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1315] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1316] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1317] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1318] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1319] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1320] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1321] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1322] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1323] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1324] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1325] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1326] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1327] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1328] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1329] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1330] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1331] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1332] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1333] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1334] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Using Amber 20 recommended default charges and atom types for standard
+residues
+Assigning partial charges to residue CAV[Z0] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z2] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z3] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z4] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z5] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z6] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z7] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z8] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z9] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z10] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z11] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z12] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z13] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z14] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z15] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z16] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z17] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z18] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z19] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z20] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z21] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z22] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z23] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z24] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z25] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z26] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z27] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z28] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z29] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z30] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z31] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z32] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z33] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z34] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z35] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z36] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z37] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z38] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z39] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z40] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z41] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z42] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z43] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z44] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z45] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z46] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z47] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z48] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z49] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z50] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z51] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z52] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z53] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z54] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z55] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z56] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z57] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z58] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z59] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z60] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z61] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z62] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z63] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z64] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z65] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z66] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z67] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z68] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z69] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z70] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z71] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z72] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z73] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z74] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z75] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z76] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z77] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z78] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z79] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z80] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z81] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z82] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z83] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z84] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z85] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z86] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z87] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z88] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z89] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z90] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z91] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z92] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z93] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z94] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z95] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z96] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z97] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z98] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z99] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z100] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z101] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z102] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z103] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z104] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z105] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z106] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z107] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z108] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z109] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z110] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z111] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z112] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z113] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z114] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Using Amber 20 recommended default charges and atom types for standard
+residues
+Assigning partial charges to residue CAV[Z0] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z2] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z3] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z4] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z5] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z6] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z7] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z8] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z9] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z10] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z11] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z12] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z13] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z14] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z15] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z16] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z17] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z18] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z19] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z20] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z21] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z22] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z23] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z24] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z25] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z26] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z27] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z28] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z29] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z30] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z31] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z32] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z33] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z34] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z35] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z36] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z37] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z38] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z39] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z40] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z41] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z42] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z43] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z44] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z45] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z46] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z47] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z48] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z49] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z50] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z51] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z52] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z53] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z54] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z55] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z56] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z57] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z58] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z59] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z60] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z61] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z62] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z63] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z64] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z65] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z66] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z67] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z68] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z69] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z70] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z71] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z72] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z73] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z74] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z75] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z76] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z77] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z78] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z79] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Using Amber 20 recommended default charges and atom types for standard
+residues
+Assigning partial charges to residue CAV[Z0] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z2] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z3] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z4] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z5] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z6] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z7] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z8] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z9] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z10] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z11] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z12] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z13] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z14] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z15] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z16] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z17] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z18] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z19] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z20] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z21] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z22] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z23] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z24] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z25] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z26] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z27] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z28] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z29] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z30] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z31] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z32] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z33] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z34] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z35] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z36] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z37] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z38] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z39] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z40] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z41] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z42] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z43] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z44] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z45] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z46] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z47] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z48] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z49] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z50] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z51] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z52] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z53] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z54] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z55] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z56] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z57] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z58] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z59] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z60] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z61] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z62] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z63] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z64] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z65] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z66] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z67] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z68] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z69] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z70] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z71] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z72] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z73] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z74] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z75] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z76] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z77] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z78] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z79] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z80] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z81] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z82] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z83] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z84] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z85] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z86] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z87] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z88] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z89] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z90] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z91] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z92] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z93] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z94] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z95] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z96] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z97] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z98] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z99] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z100] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z101] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z102] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z103] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z104] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z105] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z106] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z107] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z108] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z109] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z110] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z111] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z112] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z113] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z114] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z115] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z116] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z117] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z118] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z119] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z120] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z121] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z122] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z123] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z124] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z125] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z126] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z127] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z128] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z129] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z130] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z131] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z132] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z133] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z134] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z135] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z136] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z137] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z138] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z139] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z140] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z141] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z142] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z143] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z144] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z145] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z146] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z147] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z148] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z149] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z150] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z151] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z152] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z153] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z154] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z155] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z156] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z157] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z158] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z159] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z160] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z161] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z162] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z163] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z164] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z165] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z166] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z167] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z168] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z169] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z170] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z171] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z172] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z173] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z174] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z175] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z176] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z177] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z178] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z179] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z180] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z181] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z182] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z183] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z184] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z185] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z186] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z187] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z188] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z189] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z190] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z191] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z192] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z193] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z194] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z195] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z196] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z197] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z198] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z199] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z200] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z201] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z202] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z203] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z204] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z205] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z206] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z207] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z208] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z209] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z210] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z211] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z212] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z213] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z214] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z215] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z216] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z217] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z218] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z219] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z220] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z221] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z222] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z223] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z224] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z225] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z226] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z227] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z228] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z229] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z230] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z231] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z232] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z233] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z234] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z235] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z236] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z237] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z238] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z239] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z240] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z241] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z242] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z243] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z244] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z245] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z246] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z247] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z248] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z249] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z250] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z251] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z252] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z253] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z254] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z255] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z256] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z257] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z258] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z259] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z260] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z261] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z262] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z263] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z264] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z265] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z266] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z267] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z268] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z269] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z270] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z271] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z272] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z273] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z274] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z275] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Using Amber 20 recommended default charges and atom types for standard
+residues
+Assigning partial charges to residue CAV[Z0] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z2] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z3] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z4] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z5] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z6] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z7] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z8] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z9] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z10] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z11] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z12] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z13] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z14] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z15] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z16] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z17] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z18] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z19] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z20] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z21] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z22] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z23] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z24] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z25] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z26] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z27] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z28] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z29] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z30] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z31] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z32] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z33] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z34] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z35] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z36] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z37] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z38] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z39] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z40] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z41] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z42] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z43] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z44] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z45] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z46] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z47] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z48] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z49] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z50] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z51] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z52] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z53] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z54] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z55] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z56] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z57] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z58] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z59] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z60] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z61] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z62] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z63] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z64] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z65] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z66] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z67] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z68] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z69] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z70] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z71] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z72] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z73] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z74] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z75] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z76] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z77] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z78] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z79] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z80] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z81] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z82] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z83] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z84] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z85] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z86] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z87] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z88] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z89] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z90] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z91] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z92] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z93] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z94] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z95] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z96] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z97] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z98] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z99] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z100] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z101] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z102] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z103] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z104] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z105] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z106] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z107] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z108] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z109] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z110] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z111] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z112] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z113] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z114] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z115] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z116] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z117] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z118] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z119] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z120] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z121] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z122] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z123] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z124] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z125] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z126] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z127] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z128] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z129] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z130] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z131] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z132] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z133] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z134] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z135] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z136] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z137] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z138] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z139] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z140] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z141] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z142] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z143] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z144] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z145] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z146] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z147] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z148] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z149] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z150] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z151] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z152] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z153] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z154] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z155] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z156] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z157] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z158] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z159] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z160] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z161] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z162] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z163] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z164] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z165] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z166] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z167] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z168] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z169] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z170] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z171] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z172] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z173] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z174] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z175] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z176] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z177] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z178] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z179] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z180] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z181] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z182] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z183] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z184] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z185] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z186] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z187] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z188] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z189] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z190] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z191] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z192] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z193] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z194] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z195] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z196] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z197] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z198] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z199] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z200] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z201] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z202] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z203] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z204] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z205] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z206] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z207] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z208] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z209] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z210] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z211] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z212] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z213] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z214] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z215] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z216] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z217] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z218] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z219] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z220] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z221] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z222] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z223] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z224] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z225] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z226] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z227] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z228] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z229] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z230] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z231] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z232] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z233] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z234] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z235] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z236] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z237] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z238] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z239] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z240] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z241] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z242] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z243] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z244] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z245] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z246] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z247] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z248] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z249] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z250] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z251] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z252] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z253] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z254] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z255] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z256] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z257] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z258] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z259] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z260] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z261] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z262] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z263] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z264] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z265] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z266] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z267] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z268] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z269] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z270] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z271] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z272] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z273] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z274] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z275] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z276] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z277] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z278] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z279] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z280] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z281] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z282] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z283] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z284] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z285] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z286] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z287] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z288] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z289] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z290] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z291] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z292] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z293] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z294] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z295] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z296] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z297] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z298] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z299] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z300] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z301] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z302] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z303] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z304] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z305] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z306] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z307] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z308] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z309] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z310] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z311] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z312] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z313] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z314] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z315] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z316] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z317] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z318] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z319] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z320] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z321] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z322] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z323] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z324] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z325] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z326] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z327] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z328] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z329] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z330] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z331] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z332] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z333] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z334] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z335] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z336] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z337] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z338] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z339] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z340] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z341] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z342] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z343] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z344] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z345] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z346] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z347] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z348] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z349] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z350] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z351] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z352] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z353] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z354] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z355] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z356] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z357] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z358] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z359] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z360] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z361] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z362] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z363] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z364] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z365] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z366] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z367] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z368] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z369] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z370] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z371] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z372] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z373] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z374] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z375] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z376] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z377] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z378] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z379] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z380] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z381] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z382] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z383] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z384] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z385] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z386] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z387] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z388] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z389] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z390] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z391] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z392] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z393] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z394] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z395] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z396] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z397] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z398] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z399] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z400] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z401] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z402] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z403] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z404] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z405] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z406] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z407] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z408] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z409] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z410] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z411] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z412] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z413] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z414] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z415] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z416] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z417] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z418] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z419] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z420] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z421] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z422] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z423] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z424] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z425] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z426] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z427] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z428] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z429] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z430] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z431] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z432] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z433] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z434] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z435] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z436] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z437] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z438] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z439] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z440] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z441] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z442] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z443] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z444] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z445] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z446] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z447] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z448] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z449] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z450] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z451] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z452] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z453] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z454] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z455] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z456] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z457] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z458] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z459] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z460] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z461] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z462] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z463] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z464] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z465] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z466] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z467] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z468] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z469] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z470] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z471] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z472] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z473] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z474] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z475] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z476] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z477] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z478] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z479] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z480] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z481] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z482] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z483] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z484] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z485] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z486] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z487] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z488] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z489] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z490] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z491] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z492] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z493] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z494] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z495] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z496] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z497] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z498] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z499] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z500] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z501] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z502] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z503] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z504] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z505] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z506] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z507] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z508] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z509] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z510] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z511] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z512] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z513] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z514] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z515] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z516] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z517] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z518] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z519] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z520] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z521] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z522] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z523] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z524] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z525] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z526] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z527] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z528] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z529] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z530] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z531] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z532] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z533] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z534] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z535] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z536] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z537] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z538] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z539] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z540] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z541] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z542] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z543] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z544] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z545] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z546] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z547] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z548] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z549] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z550] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z551] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z552] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z553] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z554] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z555] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z556] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z557] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z558] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z559] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z560] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z561] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z562] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z563] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z564] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z565] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z566] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z567] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z568] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z569] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z570] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z571] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z572] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z573] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z574] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z575] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z576] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z577] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z578] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z579] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z580] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z581] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z582] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z583] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z584] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z585] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z586] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z587] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z588] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z589] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z590] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z591] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z592] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z593] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z594] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z595] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z596] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z597] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z598] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z599] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z600] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z601] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z602] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z603] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z604] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z605] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z606] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z607] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z608] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z609] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z610] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z611] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z612] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z613] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z614] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z615] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z616] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z617] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z618] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z619] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z620] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z621] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z622] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z623] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z624] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z625] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z626] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z627] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z628] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z629] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z630] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z631] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z632] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z633] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z634] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z635] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z636] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z637] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z638] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z639] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z640] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z641] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z642] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z643] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z644] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z645] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z646] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z647] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z648] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z649] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z650] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z651] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z652] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z653] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z654] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z655] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z656] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z657] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z658] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z659] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z660] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z661] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z662] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z663] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z664] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z665] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z666] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z667] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z668] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z669] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z670] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z671] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z672] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z673] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z674] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z675] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z676] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z677] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z678] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z679] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z680] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z681] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z682] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z683] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z684] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z685] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z686] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z687] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z688] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z689] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z690] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z691] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z692] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z693] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z694] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z695] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z696] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z697] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z698] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z699] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z700] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z701] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z702] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z703] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z704] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z705] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z706] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z707] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z708] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z709] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z710] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z711] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z712] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z713] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z714] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z715] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z716] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z717] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z718] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z719] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z720] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z721] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z722] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z723] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z724] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z725] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z726] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z727] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z728] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z729] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z730] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z731] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z732] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z733] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z734] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z735] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z736] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z737] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z738] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z739] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z740] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z741] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z742] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z743] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z744] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z745] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z746] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z747] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z748] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z749] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z750] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z751] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z752] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z753] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z754] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z755] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z756] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z757] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z758] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z759] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z760] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z761] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z762] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z763] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z764] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z765] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z766] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z767] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z768] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z769] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z770] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z771] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z772] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z773] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z774] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z775] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z776] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z777] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z778] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z779] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z780] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z781] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z782] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z783] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z784] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z785] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z786] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z787] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z788] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z789] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z790] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z791] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z792] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z793] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z794] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z795] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z796] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z797] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z798] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z799] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z800] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z801] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z802] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z803] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z804] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z805] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z806] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z807] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z808] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z809] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z810] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z811] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z812] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z813] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z814] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z815] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z816] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z817] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z818] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z819] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z820] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z821] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z822] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z823] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z824] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z825] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z826] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z827] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z828] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z829] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z830] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z831] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z832] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z833] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z834] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z835] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z836] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z837] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z838] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z839] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z840] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z841] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z842] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z843] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z844] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z845] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z846] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z847] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z848] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z849] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z850] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z851] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z852] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z853] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z854] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z855] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z856] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z857] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z858] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z859] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z860] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z861] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z862] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z863] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z864] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z865] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z866] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z867] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z868] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z869] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z870] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z871] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z872] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z873] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z874] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z875] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z876] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z877] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z878] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z879] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z880] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z881] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z882] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z883] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z884] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z885] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z886] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z887] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z888] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z889] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z890] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z891] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z892] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z893] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z894] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z895] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z896] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z897] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z898] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z899] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z900] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z901] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z902] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z903] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z904] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z905] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z906] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z907] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z908] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z909] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z910] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z911] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z912] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z913] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z914] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z915] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z916] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z917] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z918] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z919] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z920] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z921] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z922] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z923] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z924] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z925] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z926] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z927] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z928] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z929] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z930] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z931] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z932] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z933] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z934] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z935] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z936] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z937] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z938] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z939] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z940] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z941] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z942] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z943] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z944] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z945] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z946] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z947] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z948] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z949] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z950] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z951] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z952] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z953] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z954] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z955] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z956] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z957] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z958] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z959] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z960] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z961] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z962] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z963] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z964] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z965] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z966] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z967] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z968] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z969] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z970] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z971] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z972] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z973] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z974] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z975] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z976] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z977] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z978] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z979] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z980] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z981] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z982] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z983] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z984] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z985] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z986] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z987] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z988] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z989] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z990] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z991] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z992] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z993] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z994] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z995] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z996] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z997] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z998] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z999] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1000] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1001] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1002] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1003] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1004] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1005] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1006] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1007] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1008] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1009] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1010] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1011] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1012] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1013] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1014] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1015] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1016] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1017] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1018] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1019] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1020] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1021] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1022] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1023] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1024] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1025] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1026] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1027] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1028] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1029] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1030] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1031] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1032] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1033] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1034] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1035] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1036] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1037] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1038] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1039] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1040] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1041] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1042] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1043] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1044] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1045] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1046] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1047] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1048] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1049] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1050] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1051] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1052] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1053] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1054] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1055] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1056] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1057] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1058] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1059] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1060] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1061] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1062] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1063] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1064] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1065] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1066] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1067] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1068] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1069] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1070] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1071] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1072] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1073] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1074] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1075] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1076] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1077] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1078] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1079] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1080] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1081] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1082] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1083] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1084] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1085] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1086] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1087] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1088] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1089] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1090] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1091] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1092] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1093] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1094] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1095] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1096] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1097] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1098] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1099] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1100] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1101] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1102] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1103] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1104] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1105] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1106] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1107] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1108] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1109] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1110] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1111] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1112] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1113] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1114] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1115] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1116] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1117] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1118] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1119] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1120] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1121] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1122] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1123] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1124] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1125] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1126] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1127] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1128] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1129] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1130] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1131] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1132] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1133] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1134] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1135] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1136] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1137] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1138] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1139] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1140] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1141] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1142] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1143] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1144] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1145] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1146] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1147] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1148] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1149] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1150] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1151] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1152] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1153] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1154] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1155] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1156] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1157] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1158] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1159] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1160] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1161] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1162] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1163] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1164] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1165] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1166] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1167] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1168] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1169] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1170] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1171] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1172] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1173] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1174] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1175] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1176] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1177] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1178] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1179] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1180] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1181] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1182] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1183] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1184] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1185] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1186] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1187] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1188] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1189] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1190] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1191] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1192] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1193] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1194] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1195] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1196] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1197] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1198] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1199] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1200] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1201] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1202] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1203] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1204] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1205] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1206] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1207] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1208] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1209] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1210] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1211] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1212] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1213] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1214] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1215] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1216] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1217] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1218] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1219] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1220] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1221] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1222] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1223] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1224] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1225] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1226] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1227] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1228] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1229] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1230] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1231] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1232] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1233] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1234] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1235] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1236] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1237] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1238] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1239] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1240] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1241] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1242] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1243] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1244] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1245] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1246] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1247] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1248] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1249] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1250] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1251] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1252] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1253] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1254] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1255] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1256] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1257] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1258] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1259] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1260] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1261] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1262] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1263] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1264] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1265] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1266] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1267] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1268] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1269] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1270] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1271] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1272] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1273] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1274] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1275] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1276] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1277] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1278] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1279] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1280] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1281] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1282] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1283] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1284] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1285] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1286] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1287] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1288] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1289] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1290] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1291] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1292] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1293] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1294] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1295] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1296] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1297] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1298] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1299] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1300] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1301] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1302] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1303] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1304] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1305] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1306] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1307] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1308] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1309] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1310] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1311] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1312] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1313] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1314] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1315] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1316] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1317] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1318] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1319] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1320] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1321] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1322] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1323] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1324] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1325] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1326] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1327] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1328] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1329] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1330] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1331] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1332] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1333] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1334] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1335] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1336] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1337] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1338] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1339] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1340] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1341] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1342] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1343] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1344] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1345] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1346] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1347] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1348] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1349] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1350] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1351] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1352] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1353] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1354] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1355] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1356] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1357] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1358] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1359] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1360] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1361] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1362] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1363] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1364] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1365] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1366] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1367] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1368] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1369] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1370] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1371] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1372] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1373] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1374] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1375] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1376] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1377] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1378] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1379] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1380] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1381] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1382] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1383] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1384] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1385] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1386] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1387] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1388] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1389] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1390] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1391] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1392] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1393] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1394] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1395] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1396] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1397] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Using Amber 20 recommended default charges and atom types for standard
+residues
+Assigning partial charges to residue CAV[Z0] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z2] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z3] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z4] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z5] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z6] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z7] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z8] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z9] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z10] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z11] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z12] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z13] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z14] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z15] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z16] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z17] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z18] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z19] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z20] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z21] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z22] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z23] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z24] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z25] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z26] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z27] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z28] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z29] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z30] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z31] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z32] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z33] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z34] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z35] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z36] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z37] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z38] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z39] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z40] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z41] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z42] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Using Amber 20 recommended default charges and atom types for standard
+residues
+Assigning partial charges to residue CAV[Z0] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z2] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z3] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z4] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z5] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z6] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z7] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z8] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z9] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z10] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z11] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z12] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z13] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z14] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z15] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z16] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z17] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z18] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z19] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z20] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z21] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z22] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z23] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z24] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z25] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z26] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z27] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z28] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z29] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z30] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z31] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z32] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z33] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z34] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z35] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z36] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z37] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z38] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z39] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z40] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z41] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z42] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z43] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z44] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z45] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z46] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z47] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z48] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z49] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z50] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z51] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z52] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z53] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z54] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z55] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z56] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z57] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z58] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z59] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z60] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z61] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z62] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z63] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z64] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z65] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z66] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z67] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z68] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z69] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z70] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z71] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z72] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z73] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z74] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z75] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z76] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z77] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z78] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z79] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z80] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z81] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z82] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z83] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z84] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z85] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z86] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z87] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z88] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z89] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z90] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z91] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z92] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z93] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z94] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z95] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z96] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z97] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z98] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z99] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z100] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z101] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z102] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z103] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z104] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z105] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z106] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z107] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z108] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z109] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z110] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z111] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z112] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z113] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z114] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z115] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z116] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z117] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z118] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z119] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z120] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z121] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z122] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z123] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z124] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z125] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z126] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z127] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z128] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z129] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z130] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z131] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z132] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z133] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z134] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z135] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z136] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z137] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Using Amber 20 recommended default charges and atom types for standard
+residues
+Assigning partial charges to residue CAV[Z0] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z2] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z3] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z4] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z5] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z6] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z7] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z8] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z9] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z10] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z11] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z12] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z13] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z14] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z15] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z16] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z17] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z18] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z19] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z20] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z21] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z22] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z23] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z24] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z25] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Using Amber 20 recommended default charges and atom types for standard
+residues
+Assigning partial charges to residue CAV[Z0] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z2] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z3] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z4] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z5] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z6] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z7] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z8] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z9] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z10] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z11] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z12] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z13] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z14] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z15] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z16] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z17] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z18] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z19] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z20] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z21] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z22] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z23] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z24] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z25] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z26] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z27] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z28] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z29] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z30] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z31] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z32] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z33] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z34] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z35] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z36] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z37] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z38] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z39] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z40] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z41] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z42] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z43] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z44] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z45] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z46] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z47] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z48] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z49] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z50] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z51] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z52] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z53] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z54] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z55] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z56] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z57] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z58] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z59] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z60] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z61] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z62] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z63] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z64] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z65] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z66] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z67] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z68] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z69] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z70] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z71] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z72] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z73] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z74] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z75] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z76] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Using Amber 20 recommended default charges and atom types for standard
+residues
+Assigning partial charges to residue CAV[Z0] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z1] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z2] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z3] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z4] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z5] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z6] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z7] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z8] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z9] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z10] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z11] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z12] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z13] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z14] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z15] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z16] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z17] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z18] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z19] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z20] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z21] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z22] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Assigning partial charges to residue CAV[Z23] (net charge +0) with am1-bcc
+method
+Could not determine GAFF type for atom
+Coulombic values for cavity 1_cavity SES surface #56.1.2.1.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 2_cavity SES surface #56.1.2.2.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 3_cavity SES surface #56.1.2.3.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 4_cavity SES surface #56.1.2.4.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 5_cavity SES surface #56.1.2.5.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 6_cavity SES surface #56.1.2.6.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 7_cavity SES surface #56.1.2.7.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 1_cavity SES surface #56.4.2.1.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 2_cavity SES surface #56.4.2.2.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 3_cavity SES surface #56.4.2.3.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 4_cavity SES surface #56.4.2.4.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 5_cavity SES surface #56.4.2.5.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for Asym_part_2 A_A SES surface #56.1.1: minimum, -20.92,
+mean -1.49, maximum 10.56
+Coulombic values for Asym_part_2 D_D SES surface #56.4.1: minimum, -20.68,
+mean -1.49, maximum 10.63
+To also show corresponding color key, enter the above coulombic command and
+add key true
+> coulombic #!56.1,4#!56.1.2.1-7#!56.4.2.1-5
+Coulombic values for Asym_part_2 A_A SES surface #56.1.1: minimum, -20.92,
+mean -1.49, maximum 10.56
+Coulombic values for Asym_part_2 D_D SES surface #56.4.1: minimum, -20.68,
+mean -1.49, maximum 10.63
+Coulombic values for cavity 1_cavity SES surface #56.1.2.1.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 2_cavity SES surface #56.1.2.2.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 3_cavity SES surface #56.1.2.3.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 4_cavity SES surface #56.1.2.4.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 5_cavity SES surface #56.1.2.5.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 6_cavity SES surface #56.1.2.6.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 7_cavity SES surface #56.1.2.7.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 1_cavity SES surface #56.4.2.1.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 2_cavity SES surface #56.4.2.2.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 3_cavity SES surface #56.4.2.3.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 4_cavity SES surface #56.4.2.4.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+Coulombic values for cavity 5_cavity SES surface #56.4.2.5.1: minimum, 0.00,
+mean 0.00, maximum 0.00
+To also show corresponding color key, enter the above coulombic command and
+add key true
+> show #!56.1,4#!56.1.2.1-7#!56.4.2.1-5 surfaces
+> hide #!56.1,4#!56.1.2.1-7#!56.4.2.1-5 surfaces
+> show #!56.1,4#!56.1.2.1-7#!56.4.2.1-5 surfaces
+> color #56.4 #ffacfcff
+> color #56.4 #ff97f2ff
+> color #56.1 #ffacfcff
+> color #56.1 #ff97f2ff
+> interfaces #!56.1,4#!56.1.2.1-7#!56.4.2.1-5 & ~solvent
+buried areas: #56.4/D #56.1/A 703, #56.1/A #56.1.2.4/cavity 430, #56.4/D
+#56.4.2.2/cavity 416
+> color (#!56.1,4#!56.4.2.2 & sel) red
+> color (#!56.1,4#!56.4.2.2 & sel) magenta
+> color (#!56.1,4#!56.4.2.2 & sel) light gray
+> select ~sel & ##selected
+atoms, 3123 bonds, 7404 pseudobonds, 365 residues, 3 models selected
+> select ~sel
+atoms, 727530 bonds, 17379 pseudobonds, 92863 residues, 327 models
+selected
+> select ~sel & ##selected
+atoms, 3123 bonds, 25237 pseudobonds, 365 residues, 3 models selected
+Alignment identifier is 1
+> select add #19
+atoms, 3123 bonds, 42582 pseudobonds, 365 residues, 5 models selected
+> select subtract #19
+atoms, 3123 bonds, 365 residues, 4 models selected
+> hide sel surfaces
+> select ~sel & ##selected
+atoms, 229 bonds, 352 pseudobonds, 29 residues, 3 models selected
+> show sel surfaces
+> color (#!56.1,4 & sel) #ffacfcff
+> color (#!56.1,4 & sel) #ff97f2ff
+> select clear
+Drag select of Asym_part_2 A_A SES surface, 17938 of 191048 triangles, cavity
+_cavity SES surface, cavity 2_cavity SES surface, cavity 3_cavity SES
+surface, cavity 4_cavity SES surface, cavity 5_cavity SES surface, cavity
+_cavity SES surface, cavity 7_cavity SES surface, Asym_part_2 D_D SES
+surface, 25439 of 190622 triangles, cavity 1_cavity SES surface, cavity
+_cavity SES surface, cavity 3_cavity SES surface, cavity 4_cavity SES
+surface, cavity 5_cavity SES surface, 394 residues
+> color #56.1 #9bccffff
+> color #56.1 #ff97f2ff
+> color #56.4 #ff97f2ff
+> select clear
+> show sel surfaces
+> select add #56.1
+atoms, 1676 bonds, 16187 pseudobonds, 216 residues, 14 models selected
+> select add #56.4
+atoms, 3352 bonds, 30012 pseudobonds, 406 residues, 26 models selected
+> hide sel surfaces
+> show sel cartoons
+> select clear
+> show sel surfaces
+> hide sel surfaces
+> select clear
+> show sel surfaces
+> hide sel surfaces
+> show sel atoms
+> select clear
+> color (#!56.1,4#!56.1.2.4 & sel) byelement
+> color (#!56.1,4#!56.1.2.4 & sel) byhetero
+> color (#!56.1,4#!56.1.2.4 & sel) #9bccffff
+> color (#!56.1,4#!56.1.2.4 & sel) #ff97f2ff
+> select clear
+> color (#!56.1,4#!56.1.2.4 & sel) byhetero
+> select clear
+> show #!56.1,4#!56.1.2.1-7#!56.4.2.1-5 surfaces
+> surface style #56.1.1#56.4.1#56.1.2.4 mesh
+> surface style #56.1.1#56.4.1#56.1.2.4 dot
+> surface style #56.1.1#56.4.1#56.1.2.4 solid
+> transparency (#!56.1,4#!56.1.2.4 & sel) 20
+> transparency (#!56.1,4#!56.1.2.4 & sel) 50
+> transparency (#!56.1,4#!56.1.2.4 & sel) 80
+> transparency (#!56.1,4#!56.1.2.4 & sel) 70
+> transparency (#!56.1,4#!56.1.2.4 & sel) 60
+> transparency (#!56.1,4#!56.1.2.4 & sel) 50
+> select clear
+> transparency (#!56.1,4#!56.1.2.4 & sel) 60
+> select clear
+> select #56.1.2.4/cavity:1@Z456
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z882
+atom, 1 residue, 1 model selected
+> select clear
+> ui tool show "Find Cavities"
+> select #56.1.2.4/cavity:1@Z943
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z456
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z800
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z798
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z876
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z1026
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z944
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z458
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z456
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z696
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z696
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z1025
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z946
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z700
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z324
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z453
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z696
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z696
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z1073
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z798
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z876
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z960
+atom, 1 residue, 1 model selected
+> show sel surfaces
+> select add #56.1
+atoms, 1676 bonds, 16187 pseudobonds, 204 residues, 11 models selected
+> show sel surfaces
+> transparency (#!56.1#!56.1.2.1-7 & sel) 0
+> select #56.1.2.4/cavity:1@Z932
+atom, 1 residue, 1 model selected
+> hide sel surfaces
+> show sel surfaces
+> select add #56.1
+atoms, 1676 bonds, 16187 pseudobonds, 204 residues, 11 models selected
+> hide sel surfaces
+> show sel cartoons
+> show sel atoms
+> select #56.1.2.4/cavity:1@Z529
+atom, 1 residue, 1 model selected
+> select #56.1.2.4/cavity:1@Z218
+atom, 1 residue, 1 model selected
+> ui tool show "Find Cavities"
+> kvfinder #56.1
+cavities found for Asym_part_2 A #!56.1
+Asym_part_2 A Cavities
+---
+ID |  | Volume | Area | Points
+.1.3.4 |  | 301.97 | 202.77 | 1398
+.1.3.7 |  | 67.61 | 83.82 | 313
+.1.3.3 |  | 29.81 | 37.89 | 138
+.1.3.5 |  | 18.36 | 31.06 | 85
+.1.3.1 |  | 17.28 | 36.68 | 80
+.1.3.6 |  | 9.29 | 15.23 | 43
+.1.3.2 |  | 5.62 | 11.48 | 26
+> select clear
+> hide #!56.1 models
+> show #!56.1 models
+> select add #56.1
+atoms, 1676 bonds, 16187 pseudobonds, 211 residues, 18 models selected
+> hide sel atoms
+> show sel surfaces
+> select #56.1.2.4/cavity:1@Z699
+atom, 1 residue, 1 model selected
+> select #56.1/cavity
+atoms, 14 residues, 14 models selected
+> hide (#56.1.3.1-7#!56.1.2.1-7 & sel) target a
+> surface hidePatches (#56.1.3.1-7#!56.1.2.1-7 & sel)
+> select #56.4/cavity
+atoms, 5 residues, 5 models selected
+> hide sel surfaces
+> show sel surfaces
+> hide sel surfaces
+> show sel surfaces
+> select #56.1/cavity
+atoms, 14 residues, 14 models selected
+> hide sel surfaces
+> transparency (#!56.1,4#!56.1.2.4 & sel) 50
+> select clear
+> show #!56.3 models
+> hide #!56.3 models
+> show #!56.2 models
+> show #!56.3 models
+> show #!56.5 models
+> hide #!56.5 models
+> hide #!56.2 models
+> hide #!56.3 models
+> lighting full
+> lighting soft
+> lighting simple
+> lighting soft
+> lighting shadows true intensity 0.5
+> lighting shadows false
+> lighting shadows true
+> lighting soft
+> lighting flat
+> lighting soft
+> save
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Paper_construction/Treponema_Denticola/T.d_WT_vs_mut_sheath&core_inter/Asym/4-FlaA2_FlaA2_complex.png
+> width 1625 height 1210 supersample 3 transparentBackground true
+> show #!56.2 models
+> show #!56.3 models
+> show #!56.5 models
+> hide #!56 models
+> show #!56 models
+> hide #!56 models
+> show #!101 models
+> preset "overall look" "publication 1 (silhouettes)"
+Using preset: Overall Look / Publication 1 (Silhouettes)
+Preset expands to these ChimeraX commands:
+    set bg white
+    graphics silhouettes t
+    lighting depthCue f
+> ui tool show "Volume Viewer"
+> volume #101 level 0.14
+> volume #101 level 0.125
+> show #!102 models
+> hide #!101 models
+> show #!101 models
+> show #!103 models
+> hide #!102 models
+> hide #!101 models
+> show #!101 models
+> hide #!103 models
+> show #!103 models
+> hide #!101 models
+> volume #103 level 0.125
+> show #!101 models
+> hide #!101 models
+> show #!101 models
+> hide #!103 models
+> hide #!101 models
+> show #!101 models
+> show #!103 models
+> hide #!101 models
+> show #!102 models
+> hide #!103 models
+> show #!103 models
+> close #102
+> close #101
+> open
+> /Users/clem/Jiaqi_Wang/Yale/Tomography/Data/Data_Clem_Wang/Treponema_Denticola/Sheath_Asymmetry/Local_refine_sheath_mask/DFlaB3/cryosparc_P1_J2116_004_volume_map_sharp.mrc
+Opened cryosparc_P1_J2116_004_volume_map_sharp.mrc as #16, grid size
+,360,360, pixel 1.07, shown at level 0.172, step 2, values float32
+> rename #16 id #104
+> rename #104 core_masked_map
+> rename #103 sheath_masked_map
+> volume #104 step 1
+> surface dust #103 size 10.7
+> surface dust #104 size 10.7
+> hide #!103 models
+> volume #104 level 0.15
+> show #!103 models
+> hide #!104 models
+> volume #103 level 0.13
+> volume #103 level 0.12
+> show #3 models
+> hide #3 models
+> show #!2 models
+> hide #!2 models
+> show #!4 models
+> volume #103 level 0.1002
+> volume #103 level 0.11
+> volume #104 level 0.11
+> hide #!103 models
+> volume #104 level 0.12
+> hide #!4 models
+> show #3 models
+> hide #!104 models
+> show #!103 models
+> hide #3 atoms
+> ui tool show "Fit in Map"
+> fitmap #3 inMap #103
+Fit molecule Asym_part_model.pdb (#3) to map sheath_masked_map (#103) using
+atoms
+average map value = 0.1063, steps = 56
+shifted from previous position = 0.202
+rotated from previous position = 0.948 degrees
+atoms outside contour = 17407, contour level = 0.11
+Position of Asym_part_model.pdb (#3) relative to sheath_masked_map (#103)
+coordinates:
+Matrix rotation and translation
+.85675819 0.51571636 -0.00142534 -74.04274785
+-0.51570741 0.85671879 -0.00887564 129.76572487
+-0.00335620 0.00833933 0.99995959 22.30218942
+Axis 0.01668814 0.00187177 -0.99985899
+Axis point 196.84109165 197.49213333 0.00000000
+Rotation angle (degrees) 31.04991442
+Shift along axis -23.29178907
+> fitmap #3 inMap #103
+Fit molecule Asym_part_model.pdb (#3) to map sheath_masked_map (#103) using
+atoms
+average map value = 0.1062, steps = 40
+shifted from previous position = 0.0228
+rotated from previous position = 0.00729 degrees
+atoms outside contour = 17412, contour level = 0.11
+Position of Asym_part_model.pdb (#3) relative to sheath_masked_map (#103)
+coordinates:
+Matrix rotation and translation
+.85676565 0.51570426 -0.00131767 -74.04284292
+-0.51569419 0.85672606 -0.00894201 129.76740424
+-0.00348255 0.00834072 0.99995915 22.31547078
+Axis 0.01675421 0.00209867 -0.99985744
+Axis point 196.86102329 197.49702518 0.00000000
+Rotation angle (degrees) 31.04912114
+Shift along axis -23.28047925
+> fitmap #3 inMap #103
+Fit molecule Asym_part_model.pdb (#3) to map sheath_masked_map (#103) using
+atoms
+average map value = 0.1063, steps = 40
+shifted from previous position = 0.0156
+rotated from previous position = 0.0067 degrees
+atoms outside contour = 17416, contour level = 0.11
+Position of Asym_part_model.pdb (#3) relative to sheath_masked_map (#103)
+coordinates:
+Matrix rotation and translation
+.85675984 0.51571365 -0.00141514 -74.03863526
+-0.51570460 0.85672045 -0.00887835 129.76267926
+-0.00336631 0.00833641 0.99995958 22.30126755
+Axis 0.01668803 0.00189146 -0.99985896
+Axis point 196.83993058 197.48436607 0.00000000
+Rotation angle (degrees) 31.04973076
+Shift along axis -23.28823950
+> fitmap #3 inMap #103
+Fit molecule Asym_part_model.pdb (#3) to map sheath_masked_map (#103) using
+atoms
+average map value = 0.1062, steps = 40
+shifted from previous position = 0.0113
+rotated from previous position = 0.00507 degrees
+atoms outside contour = 17409, contour level = 0.11
+Position of Asym_part_model.pdb (#3) relative to sheath_masked_map (#103)
+coordinates:
+Matrix rotation and translation
+.85676558 0.51570432 -0.00134163 -74.04233584
+-0.51569449 0.85672604 -0.00892646 129.76515343
+-0.00345401 0.00833976 0.99995926 22.31221390
+Axis 0.01673820 0.00204778 -0.99985781
+Axis point 196.85481412 197.49497569 0.00000000
+Rotation angle (degrees) 31.04912022
+Shift along axis -23.28264647
+> show #!4 models
+> hide #!4 models
+> close #4
+> volume zone #103 nearAtoms #3 range 5 invert false newMap true minimalBounds
+> true bondPointSpacing 2
+Opened sheath_masked_map zone as #4, grid size 147,99,230, pixel 1.07, shown
+at step 1, values float32
+> surface dust #4 size 10.7
+> show #!7 models
+> rename #7 FlaA1_sheath_sym_part_one_layer
+> show #!6 models
+> hide #!6 models
+> show #5 models
+> hide #5 models
+> show #!1 models
+> hide #!1 models
+> show #!2 models
+> hide #!2 models
+> show #!103 models
+> show #!104 models
+> hide #!104 models
+> hide #!103 models
+> show #!8 models
+> hide #!8 models
+> show #!9 models
+> hide #!9 models
+> show #!13 models
+> hide #!13 models
+> show #!13 models
+> show #13.1-11 target m
+> hide #!13 models
+> show #!14 models
+> show #14.1-8,10-11#!14.9 target m
+> show #!15 models
+> hide #!15 models
+> show #!15 models
+> rename #15 FlaA1_sheath_all_sym
+> hide #!15 models
+> show #!17 models
+> show #!17.1 models
+> hide #!17.1 models
+> hide #!17 models
+> show #!18 models
+> rename #15 FlaA1_sheath_all_sym_map
+> show #18.1-33 target m
+> hide #!18 models
+> close #19
+> close #21
+> show #!18 models
+> hide #!18 models
+> show #61 models
+> hide #3,61#14.1-8,10-11#!7.1,4,7,10,13,16,19,22#!14.9 atoms
+> show #3,61#14.1-8,10-11#!7.1,4,7,10,13,16,19,22#!14.9 cartoons
+> hide #!7 models
+> hide #!14 models
+> show #!103 models
+> fitmap #61 inMap #103
+Fit molecule FlaA1_sheath_sym_part (#61) to map sheath_masked_map (#103) using
+atoms
+average map value = 0.09641, steps = 52
+shifted from previous position = 0.975
+rotated from previous position = 0.681 degrees
+atoms outside contour = 36780, contour level = 0.11
+Position of FlaA1_sheath_sym_part (#61) relative to sheath_masked_map (#103)
+coordinates:
+Matrix rotation and translation
+.96994743 -0.24309272 -0.01038732 52.65357782
+-0.24323412 -0.96984038 -0.01570940 429.23187410
+-0.00625521 0.01776384 -0.99982263 365.06068504
+Axis 0.99245790 -0.12251427 -0.00419227
+Axis point 0.00000000 216.31500396 184.46408451
+Rotation angle (degrees) 179.03372911
+Shift along axis -1.86100435
+> fitmap #61 inMap #103
+Fit molecule FlaA1_sheath_sym_part (#61) to map sheath_masked_map (#103) using
+atoms
+average map value = 0.09641, steps = 40
+shifted from previous position = 0.00366
+rotated from previous position = 0.00401 degrees
+atoms outside contour = 36791, contour level = 0.11
+Position of FlaA1_sheath_sym_part (#61) relative to sheath_masked_map (#103)
+coordinates:
+Matrix rotation and translation
+.96993473 -0.24314497 -0.01034983 52.65785774
+-0.24328584 -0.96982701 -0.01573358 429.24741509
+-0.00621200 0.01777852 -0.99982264 365.05187724
+Axis 0.99245470 -0.12254088 -0.00417196
+Axis point 0.00000000 216.32198165 184.46134385
+Rotation angle (degrees) 179.03260416
+Shift along axis -1.86279710
+> fitmap #61 inMap #103
+Fit molecule FlaA1_sheath_sym_part (#61) to map sheath_masked_map (#103) using
+atoms
+average map value = 0.09641, steps = 44
+shifted from previous position = 0.00597
+rotated from previous position = 0.00461 degrees
+atoms outside contour = 36779, contour level = 0.11
+Position of FlaA1_sheath_sym_part (#61) relative to sheath_masked_map (#103)
+coordinates:
+Matrix rotation and translation
+.96994888 -0.24308646 -0.01039840 52.64991261
+-0.24322807 -0.96984186 -0.01571183 429.23124947
+-0.00626548 0.01776886 -0.99982248 365.06634286
+Axis 0.99245826 -0.12251113 -0.00419765
+Axis point 0.00000000 216.31401286 184.46744788
+Rotation angle (degrees) 179.03351436
+Shift along axis -1.86518464
+> fitmap #61 inMap #103
+Fit molecule FlaA1_sheath_sym_part (#61) to map sheath_masked_map (#103) using
+atoms
+average map value = 0.09641, steps = 48
+shifted from previous position = 0.00449
+rotated from previous position = 0.0012 degrees
+atoms outside contour = 36792, contour level = 0.11
+Position of FlaA1_sheath_sym_part (#61) relative to sheath_masked_map (#103)
+coordinates:
+Matrix rotation and translation
+.96994875 -0.24308673 -0.01040425 52.65025754
+-0.24322832 -0.96984212 -0.01569177 429.23064563
+-0.00627602 0.01775082 -0.99982273 365.07461989
+Axis 0.99245823 -0.12251124 -0.00420178
+Axis point 0.00000000 216.31546567 184.46961877
+Rotation angle (degrees) 179.03461429
+Shift along axis -1.86635999
+> fitmap #61 inMap #103
+Fit molecule FlaA1_sheath_sym_part (#61) to map sheath_masked_map (#103) using
+atoms
+average map value = 0.09641, steps = 44
+shifted from previous position = 0.0031
+rotated from previous position = 0.00236 degrees
+atoms outside contour = 36785, contour level = 0.11
+Position of FlaA1_sheath_sym_part (#61) relative to sheath_masked_map (#103)
+coordinates:
+Matrix rotation and translation
+.96995365 -0.24306864 -0.01036950 52.64174224
+-0.24320969 -0.96984660 -0.01570365 429.22917787
+-0.00623976 0.01775378 -0.99982291 365.06476606
+Axis 0.99245947 -0.12250185 -0.00418388
+Axis point 0.00000000 216.31331064 184.46499807
+Rotation angle (degrees) 179.03418694
+Shift along axis -1.86396022
+> fitmap #61 inMap #103
+Fit molecule FlaA1_sheath_sym_part (#61) to map sheath_masked_map (#103) using
+atoms
+average map value = 0.09641, steps = 40
+shifted from previous position = 0.0104
+rotated from previous position = 0.00615 degrees
+atoms outside contour = 36791, contour level = 0.11
+Position of FlaA1_sheath_sym_part (#61) relative to sheath_masked_map (#103)
+coordinates:
+Matrix rotation and translation
+.96992756 -0.24317263 -0.01037194 52.67203980
+-0.24331371 -0.96982050 -0.01570409 429.24943202
+-0.00624012 0.01775547 -0.99982288 365.05831754
+Axis 0.99245289 -0.12255506 -0.00418462
+Axis point 0.00000000 216.32664982 184.46208510
+Rotation angle (degrees) 179.03411936
+Shift along axis -1.85980109
+> split #61
+Split FlaA1_sheath_sym_part (#61) into 24 models
+Chain information for FlaA1_sheath_sym_part A #61.1
+---
+Chain | Description
+A | No description available
+Chain information for FlaA1_sheath_sym_part B #61.2
+---
+Chain | Description
+B | No description available
+Chain information for FlaA1_sheath_sym_part C #61.3
+---
+Chain | Description
+C | No description available
+Chain information for FlaA1_sheath_sym_part D #61.4
+---
+Chain | Description
+D | No description available
+Chain information for FlaA1_sheath_sym_part E #61.5
+---
+Chain | Description
+E | No description available
+Chain information for FlaA1_sheath_sym_part G #61.6
+---
+Chain | Description
+G | No description available
+Chain information for FlaA1_sheath_sym_part H #61.7
+---
+Chain | Description
+H | No description available
+Chain information for FlaA1_sheath_sym_part Q #61.8
+---
+Chain | Description
+Q | No description available
+Chain information for FlaA1_sheath_sym_part R #61.9
+---
+Chain | Description
+R | No description available
+Chain information for FlaA1_sheath_sym_part S #61.10
+---
+Chain | Description
+S | No description available
+Chain information for FlaA1_sheath_sym_part T #61.11
+---
+Chain | Description
+T | No description available
+Chain information for FlaA1_sheath_sym_part U #61.12
+---
+Chain | Description
+U | No description available
+Chain information for FlaA1_sheath_sym_part V #61.13
+---
+Chain | Description
+V | No description available
+Chain information for FlaA1_sheath_sym_part W #61.14
+---
+Chain | Description
+W | No description available
+Chain information for FlaA1_sheath_sym_part X #61.15
+---
+Chain | Description
+X | No description available
+Chain information for FlaA1_sheath_sym_part Y #61.16
+---
+Chain | Description
+Y | No description available
+Chain information for FlaA1_sheath_sym_part Z #61.17
+---
+Chain | Description
+Z | No description available
+Chain information for FlaA1_sheath_sym_part a #61.18
+---
+Chain | Description
+a | No description available
+Chain information for FlaA1_sheath_sym_part b #61.19
+---
+Chain | Description
+b | No description available
+Chain information for FlaA1_sheath_sym_part c #61.20
+---
+Chain | Description
+c | No description available
+Chain information for FlaA1_sheath_sym_part d #61.21
+---
+Chain | Description
+d | No description available
+Chain information for FlaA1_sheath_sym_part e #61.22
+---
+Chain | Description
+e | No description available
+Chain information for FlaA1_sheath_sym_part f #61.23
+---
+Chain | Description
+f | No description available
+Chain information for FlaA1_sheath_sym_part g #61.24
+---
+Chain | Description
+g | No description available
+> combine #61
+> hide #!103 models
+> show #!8 models
+> hide #!8 models
+> show #!6 models
+> hide #!6 models
+> show #!8 models
+> hide #!8 models
+> show #!15 models
+> hide #!15 models
+> rename #16 FlaA1_sheath_sym_part
+> rename #16 id #62
+> rename #61 id #16
+> rename #62 id #61
+> hide #61 models
+> hide #!4 models
+> show #!4 models
+> hide #3 models
+> hide #!4 models
+> select add #16
+atoms, 64056 bonds, 7872 residues, 25 models selected
+> color #16 #a9fab5ff models
+> select subtract #16
+Nothing selected
+> show #!103 models
+> fitmap #16.1 inMap #103
+Fit molecule FlaA1_sheath_sym_part A (#16.1) to map sheath_masked_map (#103)
+using 2616 atoms
+average map value = 0.1201, steps = 48
+shifted from previous position = 0.425
+rotated from previous position = 1.46 degrees
+atoms outside contour = 1187, contour level = 0.11
+Position of FlaA1_sheath_sym_part A (#16.1) relative to sheath_masked_map
+(#103) coordinates:
+Matrix rotation and translation
+.97350255 -0.22867241 -0.00130577 47.22169811
+-0.22866800 -0.97350022 0.00287309 423.61116407
+-0.00192816 -0.00249837 -0.99999501 367.96706043
+Axis -0.99335346 0.11510095 0.00081562
+Axis point 0.00000000 214.79177844 183.71483918
+Rotation angle (degrees) 179.84508922
+Shift along axis 2.15033027
+> color #103 #fff6b653 models
+> fitmap #16.2 inMap #103
+Fit molecule FlaA1_sheath_sym_part B (#16.2) to map sheath_masked_map (#103)
+using 2616 atoms
+average map value = 0.1122, steps = 52
+shifted from previous position = 0.324
+rotated from previous position = 1.27 degrees
+atoms outside contour = 1296, contour level = 0.11
+Position of FlaA1_sheath_sym_part B (#16.2) relative to sheath_masked_map
+(#103) coordinates:
+Matrix rotation and translation
+.96612847 -0.25659888 -0.02743677 59.88014105
+-0.25711749 -0.96622406 -0.01736785 431.92890105
+-0.02205350 0.02383405 -0.99947264 367.73694304
+Axis 0.99149505 -0.12954465 -0.01247982
+Axis point 0.00000000 217.94960108 186.50763574
+Rotation angle (degrees) 178.80944185
+Shift along axis -1.17250397
+> fitmap #16.3 inMap #103
+Fit molecule FlaA1_sheath_sym_part C (#16.3) to map sheath_masked_map (#103)
+using 2616 atoms
+average map value = 0.09848, steps = 88
+shifted from previous position = 1.34
+rotated from previous position = 2.14 degrees
+atoms outside contour = 1482, contour level = 0.11
+Position of FlaA1_sheath_sym_part C (#16.3) relative to sheath_masked_map
+(#103) coordinates:
+Matrix rotation and translation
+.96520857 -0.25906493 -0.03546476 63.22718086
+-0.26032854 -0.96479501 -0.03741156 436.58628214
+-0.02452421 0.04534245 -0.99867042 363.86700312
+Axis 0.99126017 -0.13105029 -0.01513596
+Axis point 0.00000000 218.64038074 187.01430627
+Rotation angle (degrees) 177.60767492
+Shift along axis -0.04765007
+> fitmap #16.1 inMap #103
+Fit molecule FlaA1_sheath_sym_part A (#16.1) to map sheath_masked_map (#103)
+using 2616 atoms
+average map value = 0.1201, steps = 40
+shifted from previous position = 0.0095
+rotated from previous position = 0.00904 degrees
+atoms outside contour = 1184, contour level = 0.11
+Position of FlaA1_sheath_sym_part A (#16.1) relative to sheath_masked_map
+(#103) coordinates:
+Matrix rotation and translation
+.97348572 -0.22874407 -0.00129884 47.23488084
+-0.22873941 -0.97348302 0.00301266 423.59843816
+-0.00195353 -0.00263568 -0.99999461 368.00416158
+Axis -0.99334923 0.11513744 0.00082018
+Axis point 0.00000000 214.79999345 183.71866121
+Rotation angle (degrees) 179.83710351
+Shift along axis 2.15313601
+> fitmap #16.4 inMap #103
+Fit molecule FlaA1_sheath_sym_part D (#16.4) to map sheath_masked_map (#103)
+using 2616 atoms
+average map value = 0.1051, steps = 56
+shifted from previous position = 1.36
+rotated from previous position = 1.91 degrees
+atoms outside contour = 1382, contour level = 0.11
+Position of FlaA1_sheath_sym_part D (#16.4) relative to sheath_masked_map
+(#103) coordinates:
+Matrix rotation and translation
+.96325677 -0.26776542 -0.02092975 60.99412610
+-0.26775505 -0.96348119 0.00334797 430.46563407
+-0.02106190 0.00237909 -0.99977533 371.98326581
+Axis -0.99077103 0.13513063 0.01060533
+Axis point 0.00000000 219.43818390 186.26499578
+Rotation angle (degrees) 179.97198507
+Shift along axis 1.68288534
+> fitmap #16.3 inMap #103
+Fit molecule FlaA1_sheath_sym_part C (#16.3) to map sheath_masked_map (#103)
+using 2616 atoms
+average map value = 0.09848, steps = 76
+shifted from previous position = 0.000479
+rotated from previous position = 0.000911 degrees
+atoms outside contour = 1481, contour level = 0.11
+Position of FlaA1_sheath_sym_part C (#16.3) relative to sheath_masked_map
+(#103) coordinates:
+Matrix rotation and translation
+.96520829 -0.25906484 -0.03547306 63.22920683
+-0.26032849 -0.96479555 -0.03739802 436.58353381
+-0.02453575 0.04533153 -0.99867063 363.87302759
+Axis 0.99126010 -0.13105023 -0.01514096
+Axis point 0.00000000 218.64020852 187.01610566
+Rotation angle (degrees) 177.60838229
+Shift along axis -0.04717099
+> fitmap #16.5 inMap #103
+Fit molecule FlaA1_sheath_sym_part E (#16.5) to map sheath_masked_map (#103)
+using 2616 atoms
+average map value = 0.1171, steps = 48
+shifted from previous position = 0.229
+rotated from previous position = 0.761 degrees
+atoms outside contour = 1220, contour level = 0.11
+Position of FlaA1_sheath_sym_part E (#16.5) relative to sheath_masked_map
+(#103) coordinates:
+Matrix rotation and translation
+.96839866 -0.24896140 -0.01490768 54.97628495
+-0.24928482 -0.96806556 -0.02657307 431.94803491
+-0.00781595 0.02944959 -0.99953570 363.36542689
+Axis 0.99206663 -0.12558263 -0.00572731
+Axis point 0.00000000 216.86776586 184.91385385
+Rotation angle (degrees) 178.38201956
+Shift along axis -1.78613762
+> fitmap #16.6 inMap #103
+Fit molecule FlaA1_sheath_sym_part G (#16.6) to map sheath_masked_map (#103)
+using 2616 atoms
+average map value = 0.08137, steps = 72
+shifted from previous position = 1.75
+rotated from previous position = 2.06 degrees
+atoms outside contour = 1887, contour level = 0.11
+Position of FlaA1_sheath_sym_part G (#16.6) relative to sheath_masked_map
+(#103) coordinates:
+Matrix rotation and translation
+.96773327 -0.25057459 -0.02654563 57.77453301
+-0.25158927 -0.96670845 -0.04666476 436.45630267
+-0.01396889 0.05183764 -0.99855781 360.25352648
+Axis 0.99189551 -0.12664480 -0.01021760
+Axis point 0.00000000 217.40538170 185.88726532
+Rotation angle (degrees) 177.15388675
+Shift along axis -1.64954489
+> fitmap #16.7 inMap #103
+Fit molecule FlaA1_sheath_sym_part H (#16.7) to map sheath_masked_map (#103)
+using 2616 atoms
+average map value = 0.1336, steps = 64
+shifted from previous position = 0.54
+rotated from previous position = 1.06 degrees
+atoms outside contour = 1037, contour level = 0.11
+Position of FlaA1_sheath_sym_part H (#16.7) relative to sheath_masked_map
+(#103) coordinates:
+Matrix rotation and translation
+.96737754 -0.25332067 0.00305192 52.77247713
+-0.25328893 -0.96735560 -0.00823667 429.21229993
+.00503881 0.00719495 -0.99996141 365.50152412
+Axis 0.99181076 -0.12769986 0.00204002
+Axis point 0.00000000 217.28674679 183.53772914
+Rotation angle (degrees) 179.55426182
+Shift along axis -1.72441104
+> fitmap #16.8 inMap #103
+Fit molecule FlaA1_sheath_sym_part Q (#16.8) to map sheath_masked_map (#103)
+using 2616 atoms
+average map value = 0.1275, steps = 64
+shifted from previous position = 1.23
+rotated from previous position = 1.15 degrees
+atoms outside contour = 1112, contour level = 0.11
+Position of FlaA1_sheath_sym_part Q (#16.8) relative to sheath_masked_map
+(#103) coordinates:
+Matrix rotation and translation
+.97421564 -0.22550009 -0.00731959 48.21701531
+-0.22555618 -0.97419697 -0.00804132 425.53240179
+-0.00531741 0.00948497 -0.99994087 366.98237049
+Axis 0.99353290 -0.11350009 -0.00317935
+Axis point 0.00000000 214.70584439 184.51238565
+Rotation angle (degrees) 179.49463395
+Shift along axis -1.55953969
+> fitmap #16.9 inMap #103
+Fit molecule FlaA1_sheath_sym_part R (#16.9) to map sheath_masked_map (#103)
+using 2616 atoms
+average map value = 0.09908, steps = 64
+shifted from previous position = 2.66
+rotated from previous position = 1.5 degrees
+atoms outside contour = 1478, contour level = 0.11
+Position of FlaA1_sheath_sym_part R (#16.9) relative to sheath_masked_map
+(#103) coordinates:
+Matrix rotation and translation
+.97455217 -0.22300977 -0.02268668 50.77965098
+-0.22357555 -0.97432534 -0.02653457 428.30483153
+-0.01618674 0.03093151 -0.99939042 364.77184488
+Axis 0.99361635 -0.11238706 -0.00978268
+Axis point 0.00000000 214.36974254 185.75181362
+Rotation angle (degrees) 178.34291022
+Shift along axis -1.24887651
+> fitmap #16.10 inMap #103
+Fit molecule FlaA1_sheath_sym_part S (#16.10) to map sheath_masked_map (#103)
+using 2616 atoms
+average map value = 0.1315, steps = 64
+shifted from previous position = 1.4
+rotated from previous position = 2.24 degrees
+atoms outside contour = 1087, contour level = 0.11
+Position of FlaA1_sheath_sym_part S (#16.10) relative to sheath_masked_map
+(#103) coordinates:
+Matrix rotation and translation
+.97245368 -0.23288858 0.00983472 47.47030234
+-0.23302381 -0.97233724 0.01613003 423.06514157
+.00580616 -0.01797743 -0.99982152 370.34203952
+Axis -0.99308902 0.11729742 -0.00393745
+Axis point 0.00000000 215.93713317 183.24839688
+Rotation angle (degrees) 179.01604527
+Shift along axis 1.02401265
+> fitmap #16.11 inMap #103
+Fit molecule FlaA1_sheath_sym_part T (#16.11) to map sheath_masked_map (#103)
+using 2616 atoms
+average map value = 0.1218, steps = 72
+shifted from previous position = 1.36
+rotated from previous position = 1.48 degrees
+atoms outside contour = 1156, contour level = 0.11
+Position of FlaA1_sheath_sym_part T (#16.11) relative to sheath_masked_map
+(#103) coordinates:
+Matrix rotation and translation
+.96399210 -0.26498515 -0.02240730 59.79228649
+-0.26541389 -0.96394797 -0.01896745 433.06027989
+-0.01657338 0.02423168 -0.99956897 365.55982632
+Axis 0.99095607 -0.13382575 -0.00983506
+Axis point 0.00000000 218.55723406 185.45657600
+Rotation angle (degrees) 178.75104245
+Shift along axis -2.29839062
+> fitmap #16.12 inMap #103
+Fit molecule FlaA1_sheath_sym_part U (#16.12) to map sheath_masked_map (#103)
+using 2616 atoms
+average map value = 0.09538, steps = 68
+shifted from previous position = 1.09
+rotated from previous position = 2.33 degrees
+atoms outside contour = 1569, contour level = 0.11
+Position of FlaA1_sheath_sym_part U (#16.12) relative to sheath_masked_map
+(#103) coordinates:
+Matrix rotation and translation
+.96337493 -0.26608901 -0.03324692 62.68057274
+-0.26728384 -0.96282848 -0.03899550 437.38773514
+-0.02163481 0.04645365 -0.99868612 362.36144092
+Axis 0.99079714 -0.13464433 -0.01385421
+Axis point 0.00000000 219.00862386 186.37750343
+Rotation angle (degrees) 177.52855838
+Shift along axis -1.80827714
+> fitmap #16.13 inMap #103
+Fit molecule FlaA1_sheath_sym_part V (#16.13) to map sheath_masked_map (#103)
+using 2616 atoms
+average map value = 0.1266, steps = 56
+shifted from previous position = 1.55
+rotated from previous position = 1.64 degrees
+atoms outside contour = 1112, contour level = 0.11
+Position of FlaA1_sheath_sym_part V (#16.13) relative to sheath_masked_map
+(#103) coordinates:
+Matrix rotation and translation
+.96335394 -0.26799396 -0.01133158 58.07846073
+-0.26803904 -0.96340442 -0.00263951 430.82209757
+-0.01020952 0.00558009 -0.99993230 368.04587198
+Axis 0.99079616 -0.13525327 -0.00543419
+Axis point 0.00000000 218.98999174 184.63273308
+Rotation angle (degrees) 179.76233753
+Shift along axis -2.72621411
+> fitmap #16.14 inMap #103
+Fit molecule FlaA1_sheath_sym_part W (#16.14) to map sheath_masked_map (#103)
+using 2616 atoms
+average map value = 0.1184, steps = 48
+shifted from previous position = 1.04
+rotated from previous position = 1.63 degrees
+atoms outside contour = 1195, contour level = 0.11
+Position of FlaA1_sheath_sym_part W (#16.14) relative to sheath_masked_map
+(#103) coordinates:
+Matrix rotation and translation
+.96586641 -0.25795354 -0.02370703 58.25715458
+-0.25792164 -0.96615560 0.00444573 428.60961084
+-0.02405147 0.00182058 -0.99970905 370.52527450
+Axis -0.99142967 0.13008497 0.01204639
+Axis point 0.00000000 218.25043792 185.47358359
+Rotation angle (degrees) 179.92414476
+Shift along axis 2.46128797
+> fitmap #16.15 inMap #103
+Fit molecule FlaA1_sheath_sym_part X (#16.15) to map sheath_masked_map (#103)
+using 2616 atoms
+average map value = 0.1092, steps = 48
+shifted from previous position = 1.29
+rotated from previous position = 1.71 degrees
+atoms outside contour = 1313, contour level = 0.11
+Position of FlaA1_sheath_sym_part X (#16.15) relative to sheath_masked_map
+(#103) coordinates:
+Matrix rotation and translation
+.96642642 -0.25414651 -0.03780888 61.20401018
+-0.25494267 -0.96679039 -0.01790436 431.66169553
+-0.03200294 0.02694234 -0.99912457 367.54995450
+Axis 0.99157002 -0.12837066 -0.01760338
+Axis point 0.00000000 217.69688885 186.77884127
+Rotation angle (degrees) 178.70420359
+Shift along axis -1.19475678
+> fitmap #16.16 inMap #103
+Fit molecule FlaA1_sheath_sym_part Y (#16.16) to map sheath_masked_map (#103)
+using 2616 atoms
+average map value = 0.1135, steps = 52
+shifted from previous position = 2.2
+rotated from previous position = 2.75 degrees
+atoms outside contour = 1265, contour level = 0.11
+Position of FlaA1_sheath_sym_part Y (#16.16) relative to sheath_masked_map
+(#103) coordinates:
+Matrix rotation and translation
+.96401739 -0.26534847 -0.01614435 57.80850955
+-0.26488052 -0.96392095 0.02635689 427.39133801
+-0.02255564 -0.02113218 -0.99952221 374.51323638
+Axis -0.99096221 0.13378547 0.00976484
+Axis point 0.00000000 219.86191869 184.96039764
+Rotation angle (degrees) 178.62699916
+Shift along axis 3.54976560
+> fitmap #16.17 inMap #103
+Fit molecule FlaA1_sheath_sym_part Z (#16.17) to map sheath_masked_map (#103)
+using 2616 atoms
+average map value = 0.1157, steps = 52
+shifted from previous position = 0.817
+rotated from previous position = 1.12 degrees
+atoms outside contour = 1234, contour level = 0.11
+Position of FlaA1_sheath_sym_part Z (#16.17) relative to sheath_masked_map
+(#103) coordinates:
+Matrix rotation and translation
+.96930445 -0.24467618 -0.02413358 55.54835262
+-0.24479211 -0.96957367 -0.00192700 427.32875289
+-0.02292780 0.00777556 -0.99970688 369.50204664
+Axis 0.99229645 -0.12331745 -0.01185580
+Axis point 0.00000000 216.66090830 185.60892145
+Rotation angle (degrees) 179.71988329
+Shift along axis -1.95740044
+> fitmap #16.18 inMap #103
+Fit molecule FlaA1_sheath_sym_part a (#16.18) to map sheath_masked_map (#103)
+using 2616 atoms
+average map value = 0.09549, steps = 52
+shifted from previous position = 2.17
+rotated from previous position = 1.35 degrees
+atoms outside contour = 1562, contour level = 0.11
+Position of FlaA1_sheath_sym_part a (#16.18) relative to sheath_masked_map
+(#103) coordinates:
+Matrix rotation and translation
+.96922865 -0.24446548 -0.02885175 56.78587379
+-0.24530243 -0.96897370 -0.03027665 432.88518235
+-0.02055500 0.03642241 -0.99912506 363.91977505
+Axis 0.99227516 -0.12343000 -0.01245122
+Axis point 0.00000000 216.89214988 185.98105613
+Rotation angle (degrees) 178.07397438
+Shift along axis -1.61505295
+[deleted to fit within ticket limits]
 > fitmap #16.19 inMap #103