Changes between Initial Version and Version 1 of Ticket #18077


Ignore:
Timestamp:
Jun 25, 2025, 12:53:41 PM (4 months ago)
Author:
pett
Comment:

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #18077

    • Property Component Unassigned → Window Toolkit
    • Property Owner set to Tom Goddard
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → Crash on Mac waking from sleep

  • Ticket #18077 – Description

    initial v1  
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    1742     "CFBundleShortVersionString" : "6.9",
    1743     "CFBundleIdentifier" : "com.apple.CoreFoundation",
    1744     "size" : 5500928,
    1745     "uuid" : "df489a59-b4f6-32b8-9bb4-9b832960aa52",
    1746     "path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
    1747     "name" : "CoreFoundation",
    1748     "CFBundleVersion" : "3502.1.401"
    1749   },
    1750   {
    1751     "source" : "P",
    1752     "arch" : "arm64e",
    1753     "base" : 6777049088,
    1754     "CFBundleShortVersionString" : "2.1.1",
    1755     "CFBundleIdentifier" : "com.apple.HIToolbox",
    1756     "size" : 3174368,
    1757     "uuid" : "9286e29f-fcee-31d0-acea-2842ea23bedf",
    1758     "path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
    1759     "name" : "HIToolbox"
    1760   },
    1761   {
    1762     "source" : "P",
    1763     "arch" : "arm64e",
    1764     "base" : 6577422336,
    1765     "size" : 636112,
    1766     "uuid" : "9cf0401a-a938-389e-a77d-9e9608076ccf",
    1767     "path" : "\/usr\/lib\/dyld",
    1768     "name" : "dyld"
    1769   },
    1770   {
    1771     "size" : 0,
    1772     "source" : "A",
    1773     "base" : 0,
    1774     "uuid" : "00000000-0000-0000-0000-000000000000"
    1775   },
    1776   {
    1777     "source" : "P",
    1778     "arch" : "arm64e",
    1779     "base" : 6604705792,
    1780     "CFBundleShortVersionString" : "6.9",
    1781     "CFBundleIdentifier" : "com.apple.Foundation",
    1782     "size" : 14586624,
    1783     "uuid" : "e8f6a451-0acc-3e05-b18f-fec6618ce44a",
    1784     "path" : "\/System\/Library\/Frameworks\/Foundation.framework\/Versions\/C\/Foundation",
    1785     "name" : "Foundation",
    1786     "CFBundleVersion" : "3502.1.401"
    1787   }
     179[deleted to fit within ticket limits]
     180
    1788181],
    1789182  "sharedCache" : {
    … …  
    33511744> ui tool show Matchmaker
    33521745
    3353 > matchmaker #35 to #49
    3354 
    3355 Computing secondary structure 
    3356 Parameters 
    3357 --- 
    3358 Chain pairing | bb 
    3359 Alignment algorithm | Needleman-Wunsch 
    3360 Similarity matrix | BLOSUM-62 
    3361 SS fraction | 0.3 
    3362 Gap open (HH/SS/other) | 18/18/6 
    3363 Gap extend | 1 
    3364 SS matrix |  |  | H | S | O 
    3365 ---|---|---|--- 
    3366 H | 6 | -9 | -6 
    3367 S |  | 6 | -6 
    3368 O |  |  | 4 
    3369 Iteration cutoff | 2 
    3370  
    3371 Matchmaker cluster11_1.pdb, chain B (#49) with fold_cpe30_alone_model_0.cif,
    3372 chain A (#35), sequence alignment score = 143.8 
    3373 RMSD between 30 pruned atom pairs is 1.156 angstroms; (across all 30 pairs:
    3374 1.156) 
    3375  
    3376 
    3377 > matchmaker #35 to #48
    3378 
    3379 Computing secondary structure 
    3380 Parameters 
    3381 --- 
    3382 Chain pairing | bb 
    3383 Alignment algorithm | Needleman-Wunsch 
    3384 Similarity matrix | BLOSUM-62 
    3385 SS fraction | 0.3 
    3386 Gap open (HH/SS/other) | 18/18/6 
    3387 Gap extend | 1 
    3388 SS matrix |  |  | H | S | O 
    3389 ---|---|---|--- 
    3390 H | 6 | -9 | -6 
    3391 S |  | 6 | -6 
    3392 O |  |  | 4 
    3393 Iteration cutoff | 2 
    3394  
    3395 Matchmaker cluster1_1.pdb, chain B (#48) with fold_cpe30_alone_model_0.cif,
    3396 chain A (#35), sequence alignment score = 143.8 
    3397 RMSD between 30 pruned atom pairs is 0.823 angstroms; (across all 30 pairs:
    3398 0.823) 
    3399  
    3400 
    3401 > show #48 models
    3402 
    3403 > hide #!49 models
    3404 
    3405 > show #!49 models
    3406 
    3407 > hide #35 models
    3408 
    3409 > show #35 models
    3410 
    3411 > hide #35 models
    3412 
    3413 > hide #48 models
    3414 
    3415 > hide #!49 models
    3416 
    3417 > show #35 models
    3418 
    3419 > hide #35 models
    3420 
    3421 > open
    3422 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_fe428a78299ec14/README
    3423 
    3424 '/Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_fe428a78299ec14/README'
    3425 has no suffix 
    3426 
    3427 > open
    3428 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_fe428a78299ec14/model_2.pdb
    3429 
    3430 Summary of feedback from opening
    3431 /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_fe428a78299ec14/model_2.pdb 
    3432 --- 
    3433 warning | Ignored bad PDB record found on line 15 
    3434 .Kty6Eg.B99990002_fit.pdb 
    3435  
    3436 Chain information for model_2.pdb #27 
    3437 --- 
    3438 Chain | Description 
    3439 A | No description available 
    3440 B | No description available 
    3441  
    3442 
    3443 > open
    3444 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_fe428a78299ec14/model_5.pdb
    3445 
    3446 Summary of feedback from opening
    3447 /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_fe428a78299ec14/model_5.pdb 
    3448 --- 
    3449 warning | Ignored bad PDB record found on line 14 
    3450 .hHLvdr.B99990002_fit.pdb 
    3451  
    3452 Chain information for model_5.pdb #28 
    3453 --- 
    3454 Chain | Description 
    3455 A | No description available 
    3456 B | No description available 
    3457  
    3458 
    3459 > open
    3460 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_fe428a78299ec14/model_7.pdb
    3461 
    3462 Summary of feedback from opening
    3463 /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_fe428a78299ec14/model_7.pdb 
    3464 --- 
    3465 warning | Ignored bad PDB record found on line 14 
    3466 .hKCKZK.B99990003_fit.pdb 
    3467  
    3468 Chain information for model_7.pdb #29 
    3469 --- 
    3470 Chain | Description 
    3471 A | No description available 
    3472 B | No description available 
    3473  
    3474 
    3475 > open
    3476 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_fe428a78299ec14/model_8.pdb
    3477 
    3478 Summary of feedback from opening
    3479 /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_fe428a78299ec14/model_8.pdb 
    3480 --- 
    3481 warning | Ignored bad PDB record found on line 13 
    3482 .fOys4B.B99990001_fit.pdb 
    3483  
    3484 Chain information for model_8.pdb #46 
    3485 --- 
    3486 Chain | Description 
    3487 A | No description available 
    3488 B | No description available 
    3489  
    3490 
    3491 > rename #27 CABS_2.pdb
    3492 
    3493 > rename #28 CABSl_5.pdb
    3494 
    3495 > rename #29 CABS_7.pdb
    3496 
    3497 > rename #46 CABSl_8.pdb
    3498 
    3499 > rename #46 CABS_8.pdb
    3500 
    3501 > save
    3502 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/modelXfold_Haddock_CABS-
    3503 > dock.cxs
    3504 
    3505 > ui tool show Matchmaker
    3506 
    3507 > matchmaker #27-29,46 to #3
    3508 
    3509 Computing secondary structure 
    3510 Parameters 
    3511 --- 
    3512 Chain pairing | bb 
    3513 Alignment algorithm | Needleman-Wunsch 
    3514 Similarity matrix | BLOSUM-62 
    3515 SS fraction | 0.3 
    3516 Gap open (HH/SS/other) | 18/18/6 
    3517 Gap extend | 1 
    3518 SS matrix |  |  | H | S | O 
    3519 ---|---|---|--- 
    3520 H | 6 | -9 | -6 
    3521 S |  | 6 | -6 
    3522 O |  |  | 4 
    3523 Iteration cutoff | 2 
    3524  
    3525 Matchmaker 7kp4, chain A (#3) with CABS_2.pdb, chain A (#27), sequence
    3526 alignment score = 862.7 
    3527 RMSD between 180 pruned atom pairs is 0.577 angstroms; (across all 182 pairs:
    3528 0.691) 
    3529  
    3530 Matchmaker 7kp4, chain A (#3) with CABSl_5.pdb, chain A (#28), sequence
    3531 alignment score = 873.5 
    3532 RMSD between 169 pruned atom pairs is 0.617 angstroms; (across all 182 pairs:
    3533 0.892) 
    3534  
    3535 Matchmaker 7kp4, chain A (#3) with CABS_7.pdb, chain A (#29), sequence
    3536 alignment score = 809.9 
    3537 RMSD between 180 pruned atom pairs is 0.652 angstroms; (across all 182 pairs:
    3538 0.687) 
    3539  
    3540 Matchmaker 7kp4, chain A (#3) with CABS_8.pdb, chain A (#46), sequence
    3541 alignment score = 801.5 
    3542 RMSD between 179 pruned atom pairs is 0.586 angstroms; (across all 182 pairs:
    3543 0.651) 
    3544  
    3545 
    3546 > hide #46 models
    3547 
    3548 > show #46 models
    3549 
    3550 > hide #46 models
    3551 
    3552 > show #46 models
    3553 
    3554 > hide #46 models
    3555 
    3556 > hide #29 models
    3557 
    3558 > hide #28 models
    3559 
    3560 > select #27/B:1
    3561 
    3562 6 atoms, 5 bonds, 1 residue, 1 model selected 
    3563 
    3564 > select up
    3565 
    3566 40 atoms, 39 bonds, 6 residues, 1 model selected 
    3567 
    3568 > select up
    3569 
    3570 240 atoms, 246 bonds, 30 residues, 1 model selected 
    3571 
    3572 > color sel purple
    3573 
    3574 > select clear
    3575 
    3576 > show #!9 models
    3577 
    3578 > hide #!9 models
    3579 
    3580 > show #!9 models
    3581 
    3582 > hide #!9 models
    3583 
    3584 > show #!6 models
    3585 
    3586 > hide #!6 models
    3587 
    3588 > show #!9 models
    3589 
    3590 > hide #!9 models
    3591 
    3592 > show #!49 models
    3593 
    3594 > hide #!49 models
    3595 
    3596 > select #27/B:3
    3597 
    3598 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3599 
    3600 > select up
    3601 
    3602 40 atoms, 39 bonds, 6 residues, 1 model selected 
    3603 
    3604 > select up
    3605 
    3606 240 atoms, 246 bonds, 30 residues, 1 model selected 
    3607 
    3608 > ui tool show H-Bonds
    3609 
    3610 > hbonds sel color #04fff7 restrict cross interModel false distSlop 0.8
    3611 > angleSlop 60.0 intraMol false reveal true
    3612 
    3613 17 hydrogen bonds found 
    3614 
    3615 > color sel byhetero
    3616 
    3617 > select clear
    3618 
    3619 > hide #!27 models
    3620 
    3621 > show #28 models
    3622 
    3623 > select #28/B:24
    3624 
    3625 6 atoms, 5 bonds, 1 residue, 1 model selected 
    3626 
    3627 > select up
    3628 
    3629 136 atoms, 141 bonds, 16 residues, 1 model selected 
    3630 
    3631 > select up
    3632 
    3633 240 atoms, 246 bonds, 30 residues, 1 model selected 
    3634 
    3635 > select down
    3636 
    3637 136 atoms, 141 bonds, 16 residues, 1 model selected 
    3638 
    3639 > select up
    3640 
    3641 240 atoms, 246 bonds, 30 residues, 1 model selected 
    3642 
    3643 > color sel purple
    3644 
    3645 > select clear
    3646 
    3647 > select #28/B:13
    3648 
    3649 5 atoms, 4 bonds, 1 residue, 1 model selected 
    3650 
    3651 > select up
    3652 
    3653 22 atoms, 21 bonds, 3 residues, 1 model selected 
    3654 
    3655 > select up
    3656 
    3657 240 atoms, 246 bonds, 30 residues, 1 model selected 
    3658 
    3659 > hbonds sel color #04fff7 restrict cross interModel false distSlop 0.8
    3660 > angleSlop 60.0 intraMol false reveal true
    3661 
    3662 8 hydrogen bonds found 
    3663 
    3664 > select clear
    3665 
    3666 > select #28/B:13
    3667 
    3668 5 atoms, 4 bonds, 1 residue, 1 model selected 
    3669 
    3670 > select up
    3671 
    3672 22 atoms, 21 bonds, 3 residues, 1 model selected 
    3673 
    3674 > select up
    3675 
    3676 240 atoms, 246 bonds, 30 residues, 1 model selected 
    3677 
    3678 > select up
    3679 
    3680 1578 atoms, 1607 bonds, 212 residues, 1 model selected 
    3681 
    3682 > select down
    3683 
    3684 240 atoms, 246 bonds, 30 residues, 1 model selected 
    3685 
    3686 > color sel byhetero
    3687 
    3688 > select clear
    3689 
    3690 > show #29 models
    3691 
    3692 > hide #!28 models
    3693 
    3694 > select #29/B:25
    3695 
    3696 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3697 
    3698 > select up
    3699 
    3700 240 atoms, 246 bonds, 30 residues, 1 model selected 
    3701 
    3702 > color sel purple
    3703 
    3704 > color sel byhetero
    3705 
    3706 > hbonds sel color #04fff7 restrict cross interModel false distSlop 0.8
    3707 > angleSlop 60.0 intraMol false reveal true
    3708 
    3709 12 hydrogen bonds found 
    3710 
    3711 > show #!28 models
    3712 
    3713 > select clear
    3714 
    3715 > hide #!28 models
    3716 
    3717 > hide #!29 models
    3718 
    3719 > show #46 models
    3720 
    3721 > select #46/B:19
    3722 
    3723 4 atoms, 3 bonds, 1 residue, 1 model selected 
    3724 
    3725 > select up
    3726 
    3727 240 atoms, 246 bonds, 30 residues, 1 model selected 
    3728 
    3729 > color sel purple
    3730 
    3731 > ui tool show H-Bonds
    3732 
    3733 > hbonds sel color #04fff7 restrict cross interModel false distSlop 0.8
    3734 > angleSlop 60.0 intraMol false reveal true
    3735 
    3736 5 hydrogen bonds found 
    3737 
    3738 > show #!29 models
    3739 
    3740 > hide #!29 models
    3741 
    3742 > show #!29 models
    3743 
    3744 > hide #!29 models
    3745 
    3746 > color sel byhetero
    3747 
    3748 > select clear
    3749 
    3750 > show #!6 models
    3751 
    3752 > hide #!6 models
    3753 
    3754 > show #!7 models
    3755 
    3756 > select #7/B:311
    3757 
    3758 7 atoms, 7 bonds, 1 residue, 1 model selected 
    3759 
    3760 > select add #7/B:310
    3761 
    3762 19 atoms, 19 bonds, 2 residues, 2 models selected 
    3763 
    3764 > select add #7/B:312
    3765 
    3766 31 atoms, 31 bonds, 3 residues, 2 models selected 
    3767 
    3768 > show sel atoms
    3769 
    3770 > select #7/B:306
    3771 
    3772 12 atoms, 12 bonds, 1 residue, 1 model selected 
    3773 
    3774 > show sel atoms
    3775 
    3776 > ui tool show H-Bonds
    3777 
    3778 > hbonds sel color #ff00be interModel false distSlop 0.8 angleSlop 60.0 reveal
    3779 > true
    3780 
    3781 2 hydrogen bonds found 
    3782 
    3783 > show #!6 models
    3784 
    3785 > hide #!6 models
    3786 
    3787 > show #!6 models
    3788 
    3789 > hide #!7 models
    3790 
    3791 > show #!7 models
    3792 
    3793 > hide #!7 models
    3794 
    3795 > show #!7 models
    3796 
    3797 > hide #!46 models
    3798 
    3799 > hide #!7 models
    3800 
    3801 > show #!7 models
    3802 
    3803 > hide #!6 models
    3804 
    3805 > show #!6 models
    3806 
    3807 > hide #!6 models
    3808 
    3809 > show #!6 models
    3810 
    3811 > hide #!6 models
    3812 
    3813 > show #!6 models
    3814 
    3815 > hide #!7 models
    3816 
    3817 > show #!7 models
    3818 
    3819 > hide #!7 models
    3820 
    3821 > show #!7 models
    3822 
    3823 > hide #!7 models
    3824 
    3825 > show #!7 models
    3826 
    3827 > show #!8 models
    3828 
    3829 > hide #!6 models
    3830 
    3831 > hide #!7 models
    3832 
    3833 > ui tool show "Show Sequence Viewer"
    3834 
    3835 > sequence chain #3/B
    3836 
    3837 Alignment identifier is 3/B 
    3838 
    3839 > select #3/B:210-219
    3840 
    3841 73 atoms, 73 bonds, 10 residues, 1 model selected 
    3842 
    3843 > select #3/B:210-219
    3844 
    3845 73 atoms, 73 bonds, 10 residues, 1 model selected 
    3846 
    3847 > select #3/B:228
    3848 
    3849 6 atoms, 5 bonds, 1 residue, 1 model selected 
    3850 
    3851 > select #3/B:210-228
    3852 
    3853 149 atoms, 152 bonds, 19 residues, 1 model selected 
    3854 
    3855 > select #8/B:228
    3856 
    3857 6 atoms, 5 bonds, 1 residue, 1 model selected 
    3858 
    3859 > select add #8/B:228
    3860 
    3861 6 atoms, 6 bonds, 1 residue, 1 model selected 
    3862 
    3863 > select add #8/B:210
    3864 
    3865 14 atoms, 12 bonds, 2 residues, 2 models selected 
    3866 
    3867 > select up
    3868 
    3869 140 atoms, 142 bonds, 17 residues, 2 models selected 
    3870 
    3871 > close #30-39
    3872 
    3873 > hide #8.1 models
    3874 
    3875 > show #8.1 models
    3876 
    3877 > open
    3878 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/design1_noendtail_seed_9278872321/fold_cpe30_noendtail_seed_9278872321_model_1.cif
    3879 
    3880 Chain information for fold_cpe30_noendtail_seed_9278872321_model_1.cif #30 
    3881 --- 
    3882 Chain | Description 
    3883 A | . 
    3884 B | . 
    3885  
    3886 Computing secondary structure 
    3887 
    3888 > close #30
    3889 
    3890 > hide #!8 models
    3891 
    3892 > show #!3 models
    3893 
    3894 > show #1 models
    3895 
    3896 > hide #!3 models
    3897 
    3898 > hide #8.1 models
    3899 
    3900 > show #!3 models
    3901 
    3902 > hide #1 models
    3903 
    3904 > ui tool show "Show Sequence Viewer"
    3905 
    3906 > sequence chain #3/A
    3907 
    3908 Alignment identifier is 3/A 
    3909 
    3910 > select #3/A:149
    3911 
    3912 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3913 
    3914 > select #3/A:149-153
    3915 
    3916 35 atoms, 35 bonds, 5 residues, 1 model selected 
    3917 
    3918 > ui tool show "Color Actions"
    3919 
    3920 > color sel gold
    3921 
    3922 > color sel byhetero
    3923 
    3924 > select clear
    3925 
    3926 > show #3.2 models
    3927 
    3928 > select #3:67/a
    3929 
    3930 1318 atoms, 1342 bonds, 182 residues, 1 model selected 
    3931 
    3932 > select #3:76/a
    3933 
    3934 1318 atoms, 1342 bonds, 182 residues, 1 model selected 
    3935 
    3936 > select #3:76
    3937 
    3938 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3939 
    3940 > select #3:76.a
    3941 
    3942 Expected an objects specifier or a keyword 
    3943 
    3944 > select #3:76/a
    3945 
    3946 1318 atoms, 1342 bonds, 182 residues, 1 model selected 
    3947 
    3948 > select #3:76\a
    3949 
    3950 Nothing selected 
    3951 
    3952 > select #3:76/A
    3953 
    3954 1318 atoms, 1342 bonds, 182 residues, 1 model selected 
    3955 
    3956 > select #3/A:76
    3957 
    3958 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3959 
    3960 > select #3/A:31,33,48,76,138,141,142,146,150,151,156,158
    3961 
    3962 110 atoms, 104 bonds, 12 residues, 1 model selected 
    3963 
    3964 > style sel ball
    3965 
    3966 Changed 110 atom styles 
    3967 
    3968 > show sel atoms
    3969 
    3970 > select up
    3971 
    3972 2 atoms, 1 bond, 1 residue, 1 model selected 
    3973 
    3974 > hide sel atoms
    3975 
    3976 > select up
    3977 
    3978 2 atoms, 1 bond, 1 residue, 1 model selected 
    3979 
    3980 > hide sel atoms
    3981 
    3982 > select #3/A:153
    3983 
    3984 5 atoms, 4 bonds, 1 residue, 1 model selected 
    3985 
    3986 > select up
    3987 
    3988 37 atoms, 37 bonds, 6 residues, 2 models selected 
    3989 
    3990 > select down
    3991 
    3992 5 atoms, 4 bonds, 1 residue, 2 models selected 
    3993 
    3994 > hide sel atoms
    3995 
    3996 > select add #3/A:152
    3997 
    3998 12 atoms, 10 bonds, 2 residues, 2 models selected 
    3999 
    4000 > select up
    4001 
    4002 37 atoms, 37 bonds, 6 residues, 2 models selected 
    4003 
    4004 > select down
    4005 
    4006 12 atoms, 10 bonds, 2 residues, 2 models selected 
    4007 
    4008 > select up
    4009 
    4010 37 atoms, 37 bonds, 6 residues, 2 models selected 
    4011 
    4012 > select up
    4013 
    4014 1318 atoms, 1342 bonds, 182 residues, 2 models selected 
    4015 
    4016 > select up
    4017 
    4018 2375 atoms, 2421 bonds, 316 residues, 2 models selected 
    4019 
    4020 > select down
    4021 
    4022 1318 atoms, 1342 bonds, 182 residues, 3 models selected 
    4023 
    4024 > ui tool show "Color Actions"
    4025 
    4026 > color sel orchid
    4027 
    4028 > color sel pale violet red
    4029 
    4030 > color sel hot pink
    4031 
    4032 > color sel orchid
    4033 
    4034 > select clear
    4035 
    4036 > select #3/A:31,33,48,76,138,141,142,146,150,151,156,158
    4037 
    4038 110 atoms, 104 bonds, 12 residues, 1 model selected 
    4039 
    4040 > color sel gold
    4041 
    4042 > color sel orange
    4043 
    4044 > color sel byhetero
    4045 
    4046 > select clear
    4047 
    4048 > hide #!3 models
    4049 
    4050 > show #!3 models
    4051 
    4052 > hide #3.2 models
    4053 
    4054 > show #3.2 models
    4055 
    4056 > hide #3.2 models
    4057 
    4058 > show #3.2 models
    4059 
    4060 > hide #3.2 models
    4061 
    4062 > show #3.2 models
    4063 
    4064 > hide #3.2 models
    4065 
    4066 > show #3.2 models
    4067 
    4068 > hide #3.2 models
    4069 
    4070 > select #3/A:31,33,48,76,138,141,142,146,150,151,156,158
    4071 
    4072 110 atoms, 104 bonds, 12 residues, 1 model selected 
    4073 
    4074 > ui tool show H-Bonds
    4075 
    4076 > hbonds sel color #ff00be distSlop 0.8 angleSlop 60.0 reveal true
    4077 
    4078 1446 hydrogen bonds found 
    4079 
    4080 > hbonds sel color #ff00be interModel false distSlop 0.8 angleSlop 60.0 reveal
    4081 > true
    4082 
    4083 46 hydrogen bonds found 
    4084 
    4085 > hbonds sel color #00ff05 interModel false distSlop 0.8 angleSlop 60.0 reveal
    4086 > true
    4087 
    4088 46 hydrogen bonds found 
    4089 
    4090 > select clear
    4091 
    4092 > select #3/A:31,33,48,76,138,141,142,146,150,151,156,158
    4093 
    4094 110 atoms, 104 bonds, 26 pseudobonds, 12 residues, 3 models selected 
    4095 
    4096 > select intersect sidechain
    4097 
    4098 65 bonds, 12 pseudobonds, 3 models selected 
    4099 
    4100 > ui tool show H-Bonds
    4101 
    4102 > hbonds sel color #00ff05 interModel false distSlop 0.8 angleSlop 60.0 reveal
    4103 > true
    4104 
    4105 Atom specifier selects no atoms 
    4106 
    4107 > select clear
    4108 
    4109 > select #3/A:31,33,48,76,138,141,142,146,150,151,156,158
    4110 
    4111 110 atoms, 104 bonds, 26 pseudobonds, 12 residues, 3 models selected 
    4112 
    4113 > select intersect sideonly
    4114 
    4115 53 bonds, 12 pseudobonds, 3 models selected 
    4116 
    4117 > hbonds sel color #00ff05 interModel false distSlop 0.8 angleSlop 60.0 reveal
    4118 > true
    4119 
    4120 Atom specifier selects no atoms 
    4121 
    4122 > select clear
    4123 
    4124 > select intersect sidechain
    4125 
    4126 Nothing selected 
    4127 
    4128 > select #3/A:31,33,48,76,138,141,142,146,150,151,156,158
    4129 
    4130 110 atoms, 104 bonds, 26 pseudobonds, 12 residues, 3 models selected 
    4131 
    4132 > select subtract backbone
    4133 
    4134 62 atoms, 53 bonds, 12 pseudobonds, 12 residues, 4 models selected 
    4135 
    4136 > hbonds sel color #00ff05 interModel false distSlop 0.8 angleSlop 60.0 reveal
    4137 > true
    4138 
    4139 16 hydrogen bonds found 
    4140 
    4141 > select clear
    4142 
    4143 > select #3/A:150
    4144 
    4145 7 atoms, 7 bonds, 1 residue, 1 model selected 
    4146 
    4147 > select up
    4148 
    4149 37 atoms, 37 bonds, 6 residues, 2 models selected 
    4150 
    4151 > select down
    4152 
    4153 7 atoms, 7 bonds, 1 residue, 2 models selected 
    4154 
    4155 > hbonds sel color #00ff05 dashes 6 interModel false distSlop 0.8 angleSlop
    4156 > 60.0 reveal true retainCurrent true
    4157 
    4158 1 hydrogen bonds found 
    4159 
    4160 > select #3/B:225,227,256
    4161 
    4162 25 atoms, 22 bonds, 3 residues, 1 model selected 
    4163 
    4164 > style sel ball
    4165 
    4166 Changed 25 atom styles 
    4167 
    4168 > nucleotides sel atoms
    4169 
    4170 > style nucleic & sel stick
    4171 
    4172 Changed 0 atom styles 
    4173 
    4174 > select clear
    4175 
    4176 > nucleotides #!3 fill
    4177 
    4178 > style nucleic & #!3 stick
    4179 
    4180 Changed 0 atom styles 
    4181 
    4182 > nucleotides #!3 tube/slab shape box
    4183 
    4184 > nucleotides #!3 ladder
    4185 
    4186 > select clear
    4187 
    4188 > nucleotides #!3 ladder
    4189 
    4190 > nucleotides #!3 atoms
    4191 
    4192 > style nucleic & #!3 stick
    4193 
    4194 Changed 0 atom styles 
    4195 
    4196 > select clear
    4197 
    4198 > select #3/B:225,227,256
    4199 
    4200 25 atoms, 22 bonds, 3 residues, 1 model selected 
    4201 
    4202 > color (#!3 & sel) cornflower blue
    4203 
    4204 > color (#!3 & sel) cyan
    4205 
    4206 > color (#!3 & sel) medium blue
    4207 
    4208 > color (#!3 & sel) light sea green
    4209 
    4210 > color sel byhetero
    4211 
    4212 > select #3/A:158
    4213 
    4214 11 atoms, 10 bonds, 1 residue, 1 model selected 
    4215 
    4216 > color (#!3 & sel) orange red
    4217 
    4218 > color sel byhetero
    4219 
    4220 > select #3/A:35
    4221 
    4222 11 atoms, 11 bonds, 1 residue, 1 model selected 
    4223 
    4224 > select clear
    4225 
    4226 > select #3/A:35@CG
    4227 
    4228 1 atom, 1 residue, 1 model selected 
    4229 
    4230 > select up
    4231 
    4232 11 atoms, 11 bonds, 1 residue, 2 models selected 
    4233 
    4234 > style sel ball
    4235 
    4236 Changed 11 atom styles 
    4237 
    4238 > color (#!3 & sel) orange
    4239 
    4240 > ui tool show H-Bonds
    4241 
    4242 > hbonds sel color #00ff05 dashes 6 interModel false distSlop 0.8 angleSlop
    4243 > 60.0 reveal true retainCurrent true
    4244 
    4245 2 hydrogen bonds found 
    4246 
    4247 > select clear
    4248 
    4249 > select add #3/B:223@CD2
    4250 
    4251 1 atom, 1 residue, 1 model selected 
    4252 
    4253 > select up
    4254 
    4255 8 atoms, 7 bonds, 1 residue, 2 models selected 
    4256 
    4257 > select add #3/B:315@CD2
    4258 
    4259 9 atoms, 7 bonds, 2 residues, 2 models selected 
    4260 
    4261 > select up
    4262 
    4263 16 atoms, 14 bonds, 2 residues, 2 models selected 
    4264 
    4265 > style sel ball
    4266 
    4267 Changed 16 atom styles 
    4268 
    4269 > select clear
    4270 
    4271 > show #2 models
    4272 
    4273 > ui tool show Matchmaker
    4274 
    4275 > matchmaker #1-2 to #3
    4276 
    4277 Parameters 
    4278 --- 
    4279 Chain pairing | bb 
    4280 Alignment algorithm | Needleman-Wunsch 
    4281 Similarity matrix | BLOSUM-62 
    4282 SS fraction | 0.3 
    4283 Gap open (HH/SS/other) | 18/18/6 
    4284 Gap extend | 1 
    4285 SS matrix |  |  | H | S | O 
    4286 ---|---|---|--- 
    4287 H | 6 | -9 | -6 
    4288 S |  | 6 | -6 
    4289 O |  |  | 4 
    4290 Iteration cutoff | 2 
    4291  
    4292 Matchmaker 7kp4, chain A (#3) with 8u4v, chain A (#1), sequence alignment
    4293 score = 1004.1 
    4294 RMSD between 158 pruned atom pairs is 0.714 angstroms; (across all 180 pairs:
    4295 1.325) 
    4296  
    4297 Matchmaker 7kp4, chain A (#3) with 9cmh, chain A (#2), sequence alignment
    4298 score = 907.9 
    4299 RMSD between 139 pruned atom pairs is 0.935 angstroms; (across all 180 pairs:
    4300 2.951) 
    4301  
    4302 
    4303 > select #2/A:31,33,48,76,138,141,142,146,150,151,156,158
    4304 
    4305 110 atoms, 104 bonds, 12 residues, 1 model selected 
    4306 
    4307 > show sel atoms
    4308 
    4309 > select clear
    4310 
    4311 > show #1 models
    4312 
    4313 > hide #!3 models
    4314 
    4315 > select #1/A:31,33,48,76,138,141,142,146,150,151,156,158
    4316 
    4317 110 atoms, 104 bonds, 12 residues, 1 model selected 
    4318 
    4319 > show sel atoms
    4320 
    4321 > hide #2 models
    4322 
    4323 > show #!3 models
    4324 
    4325 > select clear
    4326 
    4327 > hide #1 models
    4328 
    4329 > select #3/A:153
    4330 
    4331 5 atoms, 4 bonds, 1 residue, 1 model selected 
    4332 
    4333 > select up
    4334 
    4335 37 atoms, 37 bonds, 6 residues, 2 models selected 
    4336 
    4337 > select #3/A:149
    4338 
    4339 8 atoms, 7 bonds, 1 residue, 1 model selected 
    4340 
    4341 > select add #3/A:150
    4342 
    4343 15 atoms, 14 bonds, 2 residues, 2 models selected 
    4344 
    4345 > select up
    4346 
    4347 331 atoms, 338 bonds, 45 residues, 2 models selected 
    4348 
    4349 > select down
    4350 
    4351 15 atoms, 14 bonds, 2 residues, 2 models selected 
    4352 
    4353 > select #3/A:152
    4354 
    4355 7 atoms, 6 bonds, 1 residue, 1 model selected 
    4356 
    4357 > select up
    4358 
    4359 37 atoms, 37 bonds, 6 residues, 2 models selected 
    4360 
    4361 > select add #3/A:149
    4362 
    4363 45 atoms, 44 bonds, 7 residues, 2 models selected 
    4364 
    4365 > style sel ball
    4366 
    4367 Changed 45 atom styles 
    4368 
    4369 > style sel ball
    4370 
    4371 Changed 45 atom styles 
    4372 
    4373 > show sel atoms
    4374 
    4375 > color sel byhetero
    4376 
    4377 > color (#!3 & sel) orange red
    4378 
    4379 > color sel byhetero
    4380 
    4381 > show #1 models
    4382 
    4383 > hide #1 models
    4384 
    4385 > select #3:310
    4386 
    4387 12 atoms, 12 bonds, 1 residue, 1 model selected 
    4388 
    4389 > select #3:310,306
    4390 
    4391 24 atoms, 24 bonds, 2 residues, 1 model selected 
    4392 
    4393 > select #3:310,306,312
    4394 
    4395 36 atoms, 36 bonds, 3 residues, 1 model selected 
    4396 
    4397 > show #!7 models
    4398 
    4399 > hide #!7 models
    4400 
    4401 > show #!6 models
    4402 
    4403 > hide #!3 models
    4404 
    4405 > show #!3 models
    4406 
    4407 > hide #!3 models
    4408 
    4409 > show #!3 models
    4410 
    4411 > hide #!3 models
    4412 
    4413 > show #!3 models
    4414 
    4415 > hide #!3 models
    4416 
    4417 > show #!3 models
    4418 
    4419 > hide #!3 models
    4420 
    4421 > show #!3 models
    4422 
    4423 > hide #!3 models
    4424 
    4425 > show #!3 models
    4426 
    4427 > hide #!3 models
    4428 
    4429 > show #!3 models
    4430 
    4431 > hide #!3 models
    4432 
    4433 > show #!3 models
    4434 
    4435 > hide #!3 models
    4436 
    4437 > show #!3 models
    4438 
    4439 > style sel ball
    4440 
    4441 Changed 36 atom styles 
    4442 
    4443 > select clear
    4444 
    4445 > select #3/B:306@CB
    4446 
    4447 1 atom, 1 residue, 1 model selected 
    4448 
    4449 > select up
    4450 
    4451 12 atoms, 12 bonds, 1 residue, 2 models selected 
    4452 
    4453 > color (#!3 & sel) orange
    4454 
    4455 > color (#!3 & sel) orange red
    4456 
    4457 > color sel byhetero
    4458 
    4459 > hide #3.3 models
    4460 
    4461 > show #3.3 models
    4462 
    4463 > hide #!3 models
    4464 
    4465 > show #!3 models
    4466 
    4467 > hide #!3 models
    4468 
    4469 > show #!3 models
    4470 
    4471 > hide #!3 models
    4472 
    4473 > show #!3 models
    4474 
    4475 > hide #!3 models
    4476 
    4477 > show #!3 models
    4478 
    4479 > hide #!3 models
    4480 
    4481 > show #!3 models
    4482 
    4483 > hide #!3 models
    4484 
    4485 > show #!3 models
    4486 
    4487 > hide #!3 models
    4488 
    4489 > show #!3 models
    4490 
    4491 > hide #!3 models
    4492 
    4493 > show #!3 models
    4494 
    4495 > hide #!3 models
    4496 
    4497 > show #!3 models
    4498 
    4499 > show #9 models
    4500 
    4501 > hide #9 models
    4502 
    4503 > show #28 models
    4504 
    4505 > hide #28 models
    4506 
    4507 > select #3:315
    4508 
    4509 8 atoms, 7 bonds, 1 residue, 1 model selected 
    4510 
    4511 > select clear
    4512 
    4513 > select #3/B:148
    4514 
    4515 Nothing selected 
    4516 
    4517 > select #3/A:138
    4518 
    4519 14 atoms, 15 bonds, 1 residue, 1 model selected 
    4520 
    4521 > select #3/A:138-168
    4522 
    4523 251 atoms, 259 bonds, 17 pseudobonds, 31 residues, 3 models selected 
    4524 
    4525 > select #3/A:160
    4526 
    4527 8 atoms, 7 bonds, 1 residue, 1 model selected 
    4528 
    4529 > select #3/A:160
    4530 
    4531 8 atoms, 7 bonds, 1 residue, 1 model selected 
    4532 
    4533 > select #3/B:184-319
    4534 
    4535 1019 atoms, 1040 bonds, 129 residues, 1 model selected 
    4536 
    4537 > show #22 models
    4538 
    4539 > hide #22 models
    4540 
    4541 > select clear
    4542 
    4543 > show #9 models
    4544 
    4545 > hide #3.3 models
    4546 
    4547 > hide #!6 models
    4548 
    4549 > hide #!3 models
    4550 
    4551 > show #!3 models
    4552 
    4553 > hide #!3 models
    4554 
    4555 > show #!6 models
    4556 
    4557 > hide #!6 models
    4558 
    4559 > select #9/B:28
    4560 
    4561 9 atoms, 8 bonds, 1 residue, 1 model selected 
    4562 
    4563 > select up
    4564 
    4565 240 atoms, 246 bonds, 30 residues, 1 model selected 
    4566 
    4567 > ui tool show H-Bonds
    4568 
    4569 > hbonds sel color #00ff05 dashes 6 interModel false distSlop 0.8 angleSlop
    4570 > 60.0 reveal true retainCurrent true
    4571 
    4572 24 hydrogen bonds found 
    4573 
    4574 > show #!3 models
    4575 
    4576 > hide #!9 models
    4577 
    4578 > show #!7 models
    4579 
    4580 > hide #!7 models
    4581 
    4582 > show #!9 models
    4583 
    4584 > select add #9
    4585 
    4586 1816 atoms, 1851 bonds, 24 pseudobonds, 244 residues, 2 models selected 
    4587 
    4588 > select subtract #9
    4589 
    4590 Nothing selected 
    4591 
    4592 > hide #!3 models
    4593 
    4594 > show #10 models
    4595 
    4596 > hide #10 models
    4597 
    4598 > show #11 models
    4599 
    4600 > hide #11 models
    4601 
    4602 > show #12 models
    4603 
    4604 > hide #12 models
    4605 
    4606 > show #13 models
    4607 
    4608 > hide #13 models
    4609 
    4610 > show #!14 models
    4611 
    4612 > hide #!14 models
    4613 
    4614 > show #14.1 models
    4615 
    4616 > hide #!9 models
    4617 
    4618 > show #3.1 models
    4619 
    4620 > hide #3.1 models
    4621 
    4622 > hide #14.1 models
    4623 
    4624 > show #14.1 models
    4625 
    4626 > hide #14.1 models
    4627 
    4628 > show #14.1 models
    4629 
    4630 > show #!9 models
    4631 
    4632 > hide #!9 models
    4633 
    4634 > show #!9 models
    4635 
    4636 > hide #!9 models
    4637 
    4638 > show #!9 models
    4639 
    4640 > hide #!9 models
    4641 
    4642 > show #!9 models
    4643 
    4644 > hide #!3 models
    4645 
    4646 > show #!3 models
    4647 
    4648 > hide #!9 models
    4649 
    4650 > show #14.2 models
    4651 
    4652 > hide #14.1 models
    4653 
    4654 > hide #!14 models
    4655 
    4656 > hide #!3 models
    4657 
    4658 > show #!14 models
    4659 
    4660 > show #!9 models
    4661 
    4662 > hide #!9 models
    4663 
    4664 > show #!6 models
    4665 
    4666 > show #14.1 models
    4667 
    4668 > hide #!6 models
    4669 
    4670 > select #14.2/B:319
    4671 
    4672 12 atoms, 12 bonds, 1 residue, 1 model selected 
    4673 
    4674 > select up
    4675 
    4676 27 atoms, 28 bonds, 3 residues, 1 model selected 
    4677 
    4678 > select up
    4679 
    4680 239 atoms, 245 bonds, 30 residues, 1 model selected 
    4681 
    4682 > hbonds sel color #00ff05 dashes 6 interModel false distSlop 0.8 angleSlop
    4683 > 60.0 reveal true retainCurrent true
    4684 
    4685 27 hydrogen bonds found 
    4686 
    4687 > hbonds sel color #00ff05 dashes 6 restrict cross interModel false distSlop
    4688 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    4689 
    4690 0 hydrogen bonds found 
    4691 
    4692 > hbonds sel color #00ff05 restrict cross interModel false distSlop 0.8
    4693 > angleSlop 60.0 reveal true
    4694 
    4695 0 hydrogen bonds found 
    4696 
    4697 > hbonds sel color #00ff05 restrict cross interModel false distSlop 0.8
    4698 > angleSlop 60.0 reveal true
    4699 
    4700 0 hydrogen bonds found 
    4701 
    4702 > hide #14.1 models
    4703 
    4704 > show #14.1 models
    4705 
    4706 > show #!3 models
    4707 
    4708 > hide #!3 models
    4709 
    4710 > show #3.1 models
    4711 
    4712 > hide #3.1 models
    4713 
    4714 > hide #!14 models
    4715 
    4716 > hide #14.1 models
    4717 
    4718 > hide #!14.2 models
    4719 
    4720 > select add #14
    4721 
    4722 1775 atoms, 1809 bonds, 239 residues, 3 models selected 
    4723 
    4724 > select subtract #14
    4725 
    4726 Nothing selected 
    4727 
    4728 > show #21 models
    4729 
    4730 > hide #21 models
    4731 
    4732 > show #40 models
    4733 
    4734 > hide #40 models
    4735 
    4736 > show #40 models
    4737 
    4738 > hide #40 models
    4739 
    4740 > show #49 models
    4741 
    4742 > hide #!3 models
    4743 
    4744 > show #48 models
    4745 
    4746 > hide #48 models
    4747 
    4748 > select #49/B:21
    4749 
    4750 14 atoms, 14 bonds, 1 residue, 1 model selected 
    4751 
    4752 > select up
    4753 
    4754 291 atoms, 297 bonds, 30 residues, 1 model selected 
    4755 
    4756 > select up
    4757 
    4758 1900 atoms, 1929 bonds, 212 residues, 1 model selected 
    4759 
    4760 > select down
    4761 
    4762 291 atoms, 297 bonds, 30 residues, 1 model selected 
    4763 
    4764 > color sel lime
    4765 
    4766 > show #!3 models
    4767 
    4768 > copy #3 #1000
    4769 
    4770 Unknown command: copy #3 #1000 
    4771 
    4772 > copy #3
    4773 
    4774 Unknown command: copy #3 
    4775 
    4776 > copy
    4777 
    4778 Unknown command: copy 
    4779 
    4780 > duplicate #3
    4781 
    4782 Unknown command: duplicate #3 
    4783 
    4784 > combine #3modelId #100
    4785 
    4786 Expected a keyword 
    4787 
    4788 > combine #3 modelId #100
    4789 
    4790 > hide #!100 models
    4791 
    4792 > show #!100 models
    4793 
    4794 > hide #!3 models
    4795 
    4796 > hide #49 models
    4797 
    4798 > select add #49
    4799 
    4800 1900 atoms, 1929 bonds, 212 residues, 1 model selected 
    4801 
    4802 > select subtract #49
    4803 
    4804 Nothing selected 
    4805 
    4806 > hide #100.2 models
    4807 
    4808 > hide #100.1 models
    4809 
    4810 > show #100.1 models
    4811 
    4812 > hide #100.1 models
    4813 
    4814 > show #100.2 models
    4815 
    4816 > split #100
    4817 
    4818 Split copy of 7kp4 (#100) into 2 models 
    4819 Chain information for copy of 7kp4 A #100.1 
    4820 --- 
    4821 Chain | Description 
    4822 A | No description available 
    4823  
    4824 Chain information for copy of 7kp4 B #100.2 
    4825 --- 
    4826 Chain | Description 
    4827 B | No description available 
    4828  
    4829 
    4830 > hide #!100.1 models
    4831 
    4832 > show #!100.1 models
    4833 
    4834 > hide #100.2 models
    4835 
    4836 > show #100.2 models
    4837 
    4838 > hide #100.1.1 models
    4839 
    4840 > show #100.1.1 models
    4841 
    4842 > hide #100.1.1 models
    4843 
    4844 > show #100.1.1 models
    4845 
    4846 > hide #!100 models
    4847 
    4848 > hide #100.2 models
    4849 
    4850 > hide #!100.1 models
    4851 
    4852 > show #!100 models
    4853 
    4854 > hide #100.1.1 models
    4855 
    4856 > show #!100.1 models
    4857 
    4858 > show #15 models
    4859 
    4860 > hide #15 models
    4861 
    4862 > show #!9 models
    4863 
    4864 > hide #!100.1 models
    4865 
    4866 > show #100.2 models
    4867 
    4868 > hide #100.2 models
    4869 
    4870 > show #10 models
    4871 
    4872 > show #11 models
    4873 
    4874 > show #12 models
    4875 
    4876 > show #13 models
    4877 
    4878 > show #!14 models
    4879 
    4880 > hide #!14 models
    4881 
    4882 > show #!14 models
    4883 
    4884 > hide #!9 models
    4885 
    4886 > hide #10 models
    4887 
    4888 > hide #11 models
    4889 
    4890 > hide #12 models
    4891 
    4892 > hide #13 models
    4893 
    4894 > show #14.1 models
    4895 
    4896 > hide #14.1 models
    4897 
    4898 > show #!14.2 models
    4899 
    4900 > show #100.2 models
    4901 
    4902 > show #!100.1 models
    4903 
    4904 > hide #!100.1 models
    4905 
    4906 > show #!100.1 models
    4907 
    4908 > hide #100.2 models
    4909 
    4910 > hide #!100.1 models
    4911 
    4912 > show #15 models
    4913 
    4914 > hide #15 models
    4915 
    4916 > show #14.1 models
    4917 
    4918 > show #!100.1 models
    4919 
    4920 > hide #!100.1 models
    4921 
    4922 > show #15 models
    4923 
    4924 > hide #15 models
    4925 
    4926 > show #!9 models
    4927 
    4928 > hide #!14.2 models
    4929 
    4930 > hide #14.1 models
    4931 
    4932 > show #14.1 models
    4933 
    4934 > hide #14.1 models
    4935 
    4936 > show #!14.2 models
    4937 
    4938 > show #8.1 models
    4939 
    4940 > hide #8.1 models
    4941 
    4942 > show #8.1 models
    4943 
    4944 > hide #!8 models
    4945 
    4946 > hide #!14 models
    4947 
    4948 > show #!14 models
    4949 
    4950 > hide #!9 models
    4951 
    4952 > show #49 models
    4953 
    4954 > show #48 models
    4955 
    4956 > hide #49 models
    4957 
    4958 > hide #!100 models
    4959 
    4960 > show #47 models
    4961 
    4962 > hide #48 models
    4963 
    4964 > hide #47 models
    4965 
    4966 > show #46 models
    4967 
    4968 > hide #46 models
    4969 
    4970 > show #45 models
    4971 
    4972 > show #44 models
    4973 
    4974 > hide #45 models
    4975 
    4976 > hide #44 models
    4977 
    4978 > show #43 models
    4979 
    4980 > hide #43 models
    4981 
    4982 > show #42 models
    4983 
    4984 > hide #42 models
    4985 
    4986 > show #41 models
    4987 
    4988 > hide #41 models
    4989 
    4990 > show #40 models
    4991 
    4992 > show #41 models
    4993 
    4994 > hide #40 models
    4995 
    4996 > hide #41 models
    4997 
    4998 > show #40 models
    4999 
    5000 > select #40/B:27
    5001 
    5002 12 atoms, 12 bonds, 1 residue, 1 model selected 
    5003 
    5004 > select up
    5005 
    5006 291 atoms, 297 bonds, 30 residues, 1 model selected 
    5007 
    5008 > hide #40 models
    5009 
    5010 > show #40 models
    5011 
    5012 > hide #!14.2 models
    5013 
    5014 > ui tool show H-Bonds
    5015 
    5016 > hbonds sel color #00ff05 dashes 6 restrict cross interModel false distSlop
    5017 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    5018 
    5019 13 hydrogen bonds found 
    5020 
    5021 > show #41 models
    5022 
    5023 > hide #!40 models
    5024 
    5025 > select #41/B:6
    5026 
    5027 12 atoms, 11 bonds, 1 residue, 1 model selected 
    5028 
    5029 > select up
    5030 
    5031 291 atoms, 297 bonds, 30 residues, 1 model selected 
    5032 
    5033 > ui tool show H-Bonds
    5034 
    5035 > hbonds sel color #00ff05 dashes 6 restrict cross interModel false distSlop
    5036 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    5037 
    5038 20 hydrogen bonds found 
    5039 
    5040 > show #42 models
    5041 
    5042 > hide #!41 models
    5043 
    5044 > select #42/B:19
    5045 
    5046 5 atoms, 4 bonds, 1 residue, 1 model selected 
    5047 
    5048 > select up
    5049 
    5050 291 atoms, 297 bonds, 30 residues, 1 model selected 
    5051 
    5052 > show #48 models
    5053 
    5054 > show #!41 models
    5055 
    5056 > hide #!41 models
    5057 
    5058 > show #!41 models
    5059 
    5060 > hide #!41 models
    5061 
    5062 > hide #48 models
    5063 
    5064 > hbonds sel color #00ff05 dashes 6 restrict cross interModel false distSlop
    5065 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    5066 
    5067 24 hydrogen bonds found 
    5068 
    5069 > show #!100.1 models
    5070 
    5071 > hide #!100.1 models
    5072 
    5073 > show #!100.1 models
    5074 
    5075 > hide #!100.1 models
    5076 
    5077 > show #100.2 models
    5078 
    5079 > hide #100.2 models
    5080 
    5081 > show #!100.1 models
    5082 
    5083 > hide #!100.1 models
    5084 
    5085 > hide #!100 models
    5086 
    5087 > hide #!42 models
    5088 
    5089 > select add #42
    5090 
    5091 1900 atoms, 1929 bonds, 24 pseudobonds, 212 residues, 2 models selected 
    5092 
    5093 > select subtract #42
    5094 
    5095 Nothing selected 
    5096 
    5097 > show #27 models
    5098 
    5099 > select #27/B:9
    5100 
    5101 8 atoms, 7 bonds, 1 residue, 1 model selected 
    5102 
    5103 > select up
    5104 
    5105 34 atoms, 34 bonds, 4 residues, 1 model selected 
    5106 
    5107 > select up
    5108 
    5109 240 atoms, 246 bonds, 30 residues, 1 model selected 
    5110 
    5111 > hbonds sel color #00ff05 dashes 6 restrict cross interModel false distSlop
    5112 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    5113 
    5114 17 hydrogen bonds found 
    5115 
    5116 > select clear
    5117 
    5118 > show #!100.1 models
    5119 
    5120 > show #28 models
    5121 
    5122 > hide #!27 models
    5123 
    5124 > hide #!100.1 models
    5125 
    5126 > select #28/B:20
    5127 
    5128 8 atoms, 7 bonds, 1 residue, 1 model selected 
    5129 
    5130 > select up
    5131 
    5132 136 atoms, 141 bonds, 16 residues, 1 model selected 
    5133 
    5134 > select up
    5135 
    5136 240 atoms, 246 bonds, 30 residues, 1 model selected 
    5137 
    5138 > select down
    5139 
    5140 136 atoms, 141 bonds, 16 residues, 1 model selected 
    5141 
    5142 > select down
    5143 
    5144 8 atoms, 7 bonds, 1 residue, 1 model selected 
    5145 
    5146 > select up
    5147 
    5148 136 atoms, 141 bonds, 16 residues, 1 model selected 
    5149 
    5150 > select up
    5151 
    5152 240 atoms, 246 bonds, 30 residues, 1 model selected 
    5153 
    5154 > select down
    5155 
    5156 136 atoms, 141 bonds, 16 residues, 1 model selected 
    5157 
    5158 > select down
    5159 
    5160 8 atoms, 7 bonds, 1 residue, 1 model selected 
    5161 
    5162 > select down
    5163 
    5164 8 atoms, 7 bonds, 1 residue, 1 model selected 
    5165 
    5166 > select up
    5167 
    5168 136 atoms, 141 bonds, 16 residues, 1 model selected 
    5169 
    5170 > select up
    5171 
    5172 240 atoms, 246 bonds, 30 residues, 1 model selected 
    5173 
    5174 > select down
    5175 
    5176 136 atoms, 141 bonds, 16 residues, 1 model selected 
    5177 
    5178 > select up
    5179 
    5180 240 atoms, 246 bonds, 30 residues, 1 model selected 
    5181 
    5182 > select down
    5183 
    5184 136 atoms, 141 bonds, 16 residues, 1 model selected 
    5185 
    5186 > ui tool show H-Bonds
    5187 
    5188 > hbonds sel color #00ff05 dashes 6 restrict cross interModel false distSlop
    5189 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    5190 
    5191 8 hydrogen bonds found 
    5192 
    5193 > show #29 models
    5194 
    5195 > hide #!28 models
    5196 
    5197 > select add #28
    5198 
    5199 1578 atoms, 1607 bonds, 8 pseudobonds, 212 residues, 2 models selected 
    5200 
    5201 > select #29/B:14
    5202 
    5203 8 atoms, 7 bonds, 1 residue, 1 model selected 
    5204 
    5205 > select up
    5206 
    5207 240 atoms, 246 bonds, 30 residues, 1 model selected 
    5208 
    5209 > select down
    5210 
    5211 8 atoms, 7 bonds, 1 residue, 1 model selected 
    5212 
    5213 > select up
    5214 
    5215 240 atoms, 246 bonds, 30 residues, 1 model selected 
    5216 
    5217 > ui tool show H-Bonds
    5218 
    5219 > hbonds sel color #00ff05 dashes 6 restrict cross interModel false distSlop
    5220 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    5221 
    5222 12 hydrogen bonds found 
    5223 
    5224 > hide #!29 models
    5225 
    5226 > select add #29
    5227 
    5228 1578 atoms, 1607 bonds, 12 pseudobonds, 212 residues, 2 models selected 
    5229 
    5230 > select subtract #29
    5231 
    5232 Nothing selected 
    5233 
    5234 > show #46 models
    5235 
    5236 > hide #!100 models
    5237 
    5238 > select #46/B:13
    5239 
    5240 5 atoms, 4 bonds, 1 residue, 1 model selected 
    5241 
    5242 > select up
    5243 
    5244 240 atoms, 246 bonds, 30 residues, 1 model selected 
    5245 
    5246 > ui tool show H-Bonds
    5247 
    5248 > hbonds sel color #00ff05 dashes 6 restrict cross interModel false distSlop
    5249 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    5250 
    5251 5 hydrogen bonds found 
    5252 
    5253 > select clear
    5254 
    5255 > hide #!46 models
    5256 
    5257 > save
    5258 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/modelXfold_Haddock_CABS-
    5259 > dock.cxs
    5260 
    5261 > hbonds sel color #00ff05 dashes 6 restrict cross interModel false distSlop
    5262 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    5263 
    5264 Atom specifier selects no atoms 
    5265 
    5266 > show #15 models
    5267 
    5268 > hide #!14 models
    5269 
    5270 > show #!14 models
    5271 
    5272 > hide #!14 models
    5273 
    5274 > select #15/B:11
    5275 
    5276 6 atoms, 5 bonds, 1 residue, 1 model selected 
    5277 
    5278 > select up
    5279 
    5280 54 atoms, 55 bonds, 6 residues, 1 model selected 
    5281 
    5282 > select up
    5283 
    5284 144 atoms, 149 bonds, 17 residues, 1 model selected 
    5285 
    5286 > color sel magenta
    5287 
    5288 > select clear
    5289 
    5290 > show #!9 models
    5291 
    5292 > hide #!9 models
    5293 
    5294 > show #21 models
    5295 
    5296 > hide #21 models
    5297 
    5298 > ui tool show Matchmaker
    5299 
    5300 > matchmaker #15-26 to #3
    5301 
    5302 Parameters 
    5303 --- 
    5304 Chain pairing | bb 
    5305 Alignment algorithm | Needleman-Wunsch 
    5306 Similarity matrix | BLOSUM-62 
    5307 SS fraction | 0.3 
    5308 Gap open (HH/SS/other) | 18/18/6 
    5309 Gap extend | 1 
    5310 SS matrix |  |  | H | S | O 
    5311 ---|---|---|--- 
    5312 H | 6 | -9 | -6 
    5313 S |  | 6 | -6 
    5314 O |  |  | 4 
    5315 Iteration cutoff | 2 
    5316  
    5317 Matchmaker 7kp4, chain A (#3) with fold_cpe17_model_0.cif, chain A (#15),
    5318 sequence alignment score = 1008.3 
    5319 RMSD between 149 pruned atom pairs is 0.809 angstroms; (across all 182 pairs:
    5320 1.817) 
    5321  
    5322 Matchmaker 7kp4, chain A (#3) with fold_cpe17_model_1.cif, chain A (#16),
    5323 sequence alignment score = 997.5 
    5324 RMSD between 146 pruned atom pairs is 0.804 angstroms; (across all 182 pairs:
    5325 1.920) 
    5326  
    5327 Matchmaker 7kp4, chain A (#3) with fold_cpe17_model_2.cif, chain A (#17),
    5328 sequence alignment score = 994.5 
    5329 RMSD between 144 pruned atom pairs is 0.806 angstroms; (across all 182 pairs:
    5330 2.072) 
    5331  
    5332 Matchmaker 7kp4, chain A (#3) with fold_cpe17_model_3.cif, chain A (#18),
    5333 sequence alignment score = 996.3 
    5334 RMSD between 146 pruned atom pairs is 0.773 angstroms; (across all 182 pairs:
    5335 2.050) 
    5336  
    5337 Matchmaker 7kp4, chain A (#3) with fold_cpe17_model_4.cif, chain A (#19),
    5338 sequence alignment score = 1008.3 
    5339 RMSD between 149 pruned atom pairs is 0.839 angstroms; (across all 182 pairs:
    5340 1.883) 
    5341  
    5342 Matchmaker 7kp4, chain A (#3) with ESMfold_Cpe17.pdb, chain A (#20), sequence
    5343 alignment score = 984.3 
    5344 RMSD between 156 pruned atom pairs is 0.779 angstroms; (across all 182 pairs:
    5345 1.898) 
    5346  
    5347 Matchmaker 7kp4, chain A (#3) with fold_cpe30_mt2_model_0.cif, chain A (#21),
    5348 sequence alignment score = 999.3 
    5349 RMSD between 151 pruned atom pairs is 0.762 angstroms; (across all 182 pairs:
    5350 1.666) 
    5351  
    5352 Matchmaker 7kp4, chain A (#3) with fold_cpe30_mt2_model_1.cif, chain A (#22),
    5353 sequence alignment score = 976.5 
    5354 RMSD between 151 pruned atom pairs is 0.806 angstroms; (across all 182 pairs:
    5355 2.053) 
    5356  
    5357 Matchmaker 7kp4, chain A (#3) with fold_cpe30_mt2_model_2.cif, chain A (#23),
    5358 sequence alignment score = 999.3 
    5359 RMSD between 147 pruned atom pairs is 0.764 angstroms; (across all 182 pairs:
    5360 1.793) 
    5361  
    5362 Matchmaker 7kp4, chain A (#3) with fold_cpe30_mt2_model_3.cif, chain A (#24),
    5363 sequence alignment score = 996.3 
    5364 RMSD between 149 pruned atom pairs is 0.785 angstroms; (across all 182 pairs:
    5365 1.840) 
    5366  
    5367 Matchmaker 7kp4, chain A (#3) with fold_cpe30_mt2_model_4.cif, chain A (#25),
    5368 sequence alignment score = 985.5 
    5369 RMSD between 145 pruned atom pairs is 0.768 angstroms; (across all 182 pairs:
    5370 1.886) 
    5371  
    5372 Matchmaker 7kp4, chain A (#3) with ESMfold_Cpe30MT2.pdb, chain A (#26),
    5373 sequence alignment score = 984.3 
    5374 RMSD between 156 pruned atom pairs is 0.784 angstroms; (across all 182 pairs:
    5375 1.904) 
    5376  
    5377 
    5378 > show #!9 models
    5379 
    5380 > select #15/B:14
    5381 
    5382 11 atoms, 11 bonds, 1 residue, 1 model selected 
    5383 
    5384 > select up
    5385 
    5386 54 atoms, 55 bonds, 6 residues, 1 model selected 
    5387 
    5388 > select up
    5389 
    5390 144 atoms, 149 bonds, 17 residues, 1 model selected 
    5391 
    5392 > hide #!9 models
    5393 
    5394 > show #16 models
    5395 
    5396 > show #17 models
    5397 
    5398 > show #18 models
    5399 
    5400 > show #19 models
    5401 
    5402 > show #20 models
    5403 
    5404 > show #21 models
    5405 
    5406 > hide #21 models
    5407 
    5408 > show #21 models
    5409 
    5410 > hide #21 models
    5411 
    5412 > hide #20 models
    5413 
    5414 > show #20 models
    5415 
    5416 > hide #20 models
    5417 
    5418 > hide #19 models
    5419 
    5420 > show #19 models
    5421 
    5422 > hide #18 models
    5423 
    5424 > select add #16/B:2
    5425 
    5426 150 atoms, 154 bonds, 18 residues, 2 models selected 
    5427 
    5428 > select up
    5429 
    5430 213 atoms, 220 bonds, 26 residues, 2 models selected 
    5431 
    5432 > select add #17/B:3
    5433 
    5434 219 atoms, 225 bonds, 27 residues, 3 models selected 
    5435 
    5436 > select up
    5437 
    5438 282 atoms, 291 bonds, 35 residues, 3 models selected 
    5439 
    5440 > select add #19/B:3
    5441 
    5442 288 atoms, 296 bonds, 36 residues, 4 models selected 
    5443 
    5444 > select up
    5445 
    5446 351 atoms, 362 bonds, 44 residues, 4 models selected 
    5447 
    5448 > ui tool show H-Bonds
    5449 
    5450 > hbonds sel color #00ff05 dashes 6 restrict cross interModel false distSlop
    5451 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    5452 
    5453 26 hydrogen bonds found 
    5454 
    5455 > hide #!19 models
    5456 
    5457 > hide #!17 models
    5458 
    5459 > hide #!16 models
    5460 
    5461 > hide #!15 models
    5462 
    5463 > show #!15 models
    5464 
    5465 > select clear
    5466 
    5467 > show #100.2 models
    5468 
    5469 > hide #100.2 models
    5470 
    5471 > show #100.1.1 models
    5472 
    5473 > hide #100.1.1 models
    5474 
    5475 > hide #!100.1 models
    5476 
    5477 > show #!100.1 models
    5478 
    5479 > show #100.2 models
    5480 
    5481 > hide #100.2 models
    5482 
    5483 > show #100.2 models
    5484 
    5485 > hide #100.2 models
    5486 
    5487 > hide #!100 models
    5488 
    5489 > show #!16 models
    5490 
    5491 > hide #!15 models
    5492 
    5493 > hide #!16 models
    5494 
    5495 > show #!17 models
    5496 
    5497 > show #!7 models
    5498 
    5499 > hide #!7 models
    5500 
    5501 > show #18 models
    5502 
    5503 > hide #!17 models
    5504 
    5505 > hide #18 models
    5506 
    5507 > show #!19 models
    5508 
    5509 > hide #!19 models
    5510 
    5511 > show #20 models
    5512 
    5513 > select #20/B:759
    5514 
    5515 12 atoms, 12 bonds, 1 residue, 1 model selected 
    5516 
    5517 > select up
    5518 
    5519 62 atoms, 63 bonds, 8 residues, 1 model selected 
    5520 
    5521 > select up
    5522 
    5523 143 atoms, 148 bonds, 17 residues, 1 model selected 
    5524 
    5525 > hbonds sel color #00ff05 dashes 6 restrict cross interModel false distSlop
    5526 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    5527 
    5528 0 hydrogen bonds found 
    5529 
    5530 > hide #!20 models
    5531 
    5532 > select add #20
    5533 
    5534 1718 atoms, 1752 bonds, 231 residues, 1 model selected 
    5535 
    5536 > select subtract #20
    5537 
    5538 Nothing selected 
    5539 
    5540 > open
    5541 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/cpe17_noendtail_seed_23782398/fold_cpe17_noendtail_seed_23782398_model_0.cif
    5542 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/cpe17_noendtail_seed_23782398/fold_cpe17_noendtail_seed_23782398_model_1.cif
    5543 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/cpe17_noendtail_seed_23782398/fold_cpe17_noendtail_seed_23782398_model_2.cif
    5544 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/cpe17_noendtail_seed_23782398/fold_cpe17_noendtail_seed_23782398_model_3.cif
    5545 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/cpe17_noendtail_seed_23782398/fold_cpe17_noendtail_seed_23782398_model_4.cif
    5546 
    5547 Chain information for fold_cpe17_noendtail_seed_23782398_model_0.cif #30 
    5548 --- 
    5549 Chain | Description 
    5550 A | . 
    5551 B | . 
    5552  
    5553 Chain information for fold_cpe17_noendtail_seed_23782398_model_1.cif #31 
    5554 --- 
    5555 Chain | Description 
    5556 A | . 
    5557 B | . 
    5558  
    5559 Chain information for fold_cpe17_noendtail_seed_23782398_model_2.cif #32 
    5560 --- 
    5561 Chain | Description 
    5562 A | . 
    5563 B | . 
    5564  
    5565 Chain information for fold_cpe17_noendtail_seed_23782398_model_3.cif #33 
    5566 --- 
    5567 Chain | Description 
    5568 A | . 
    5569 B | . 
    5570  
    5571 Chain information for fold_cpe17_noendtail_seed_23782398_model_4.cif #34 
    5572 --- 
    5573 Chain | Description 
    5574 A | . 
    5575 B | . 
    5576  
    5577 Computing secondary structure 
    5578 
    5579 > open
    5580 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/cpe17_noendtail_seed15948213/fold_cpe17_noendtail_seed15948213_model_0.cif
    5581 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/cpe17_noendtail_seed15948213/fold_cpe17_noendtail_seed15948213_model_1.cif
    5582 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/cpe17_noendtail_seed15948213/fold_cpe17_noendtail_seed15948213_model_2.cif
    5583 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/cpe17_noendtail_seed15948213/fold_cpe17_noendtail_seed15948213_model_3.cif
    5584 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/cpe17_noendtail_seed15948213/fold_cpe17_noendtail_seed15948213_model_4.cif
    5585 
    5586 Chain information for fold_cpe17_noendtail_seed15948213_model_0.cif #35 
    5587 --- 
    5588 Chain | Description 
    5589 A | . 
    5590 B | . 
    5591  
    5592 Chain information for fold_cpe17_noendtail_seed15948213_model_1.cif #36 
    5593 --- 
    5594 Chain | Description 
    5595 A | . 
    5596 B | . 
    5597  
    5598 Chain information for fold_cpe17_noendtail_seed15948213_model_2.cif #37 
    5599 --- 
    5600 Chain | Description 
    5601 A | . 
    5602 B | . 
    5603  
    5604 Chain information for fold_cpe17_noendtail_seed15948213_model_3.cif #38 
    5605 --- 
    5606 Chain | Description 
    5607 A | . 
    5608 B | . 
    5609  
    5610 Chain information for fold_cpe17_noendtail_seed15948213_model_4.cif #39 
    5611 --- 
    5612 Chain | Description 
    5613 A | . 
    5614 B | . 
    5615  
    5616 Computing secondary structure 
    5617 
    5618 > ui tool show Matchmaker
    5619 
    5620 > matchmaker #30-39 to #3
    5621 
    5622 Computing secondary structure 
    5623 Parameters 
    5624 --- 
    5625 Chain pairing | bb 
    5626 Alignment algorithm | Needleman-Wunsch 
    5627 Similarity matrix | BLOSUM-62 
    5628 SS fraction | 0.3 
    5629 Gap open (HH/SS/other) | 18/18/6 
    5630 Gap extend | 1 
    5631 SS matrix |  |  | H | S | O 
    5632 ---|---|---|--- 
    5633 H | 6 | -9 | -6 
    5634 S |  | 6 | -6 
    5635 O |  |  | 4 
    5636 Iteration cutoff | 2 
    5637  
    5638 Matchmaker 7kp4, chain A (#3) with
    5639 fold_cpe17_noendtail_seed_23782398_model_0.cif, chain A (#30), sequence
    5640 alignment score = 892.1 
    5641 RMSD between 140 pruned atom pairs is 0.793 angstroms; (across all 182 pairs:
    5642 2.097) 
    5643  
    5644 Matchmaker 7kp4, chain A (#3) with
    5645 fold_cpe17_noendtail_seed_23782398_model_1.cif, chain A (#31), sequence
    5646 alignment score = 914.9 
    5647 RMSD between 145 pruned atom pairs is 0.875 angstroms; (across all 182 pairs:
    5648 1.949) 
    5649  
    5650 Matchmaker 7kp4, chain A (#3) with
    5651 fold_cpe17_noendtail_seed_23782398_model_2.cif, chain A (#32), sequence
    5652 alignment score = 908.9 
    5653 RMSD between 145 pruned atom pairs is 0.827 angstroms; (across all 182 pairs:
    5654 1.904) 
    5655  
    5656 Matchmaker 7kp4, chain A (#3) with
    5657 fold_cpe17_noendtail_seed_23782398_model_3.cif, chain A (#33), sequence
    5658 alignment score = 908.9 
    5659 RMSD between 149 pruned atom pairs is 0.816 angstroms; (across all 182 pairs:
    5660 1.833) 
    5661  
    5662 Matchmaker 7kp4, chain A (#3) with
    5663 fold_cpe17_noendtail_seed_23782398_model_4.cif, chain A (#34), sequence
    5664 alignment score = 895.1 
    5665 RMSD between 147 pruned atom pairs is 0.803 angstroms; (across all 182 pairs:
    5666 1.799) 
    5667  
    5668 Matchmaker 7kp4, chain A (#3) with
    5669 fold_cpe17_noendtail_seed15948213_model_0.cif, chain A (#35), sequence
    5670 alignment score = 896.9 
    5671 RMSD between 150 pruned atom pairs is 0.840 angstroms; (across all 182 pairs:
    5672 1.671) 
    5673  
    5674 Matchmaker 7kp4, chain A (#3) with
    5675 fold_cpe17_noendtail_seed15948213_model_1.cif, chain A (#36), sequence
    5676 alignment score = 898.1 
    5677 RMSD between 145 pruned atom pairs is 0.794 angstroms; (across all 182 pairs:
    5678 1.934) 
    5679  
    5680 Matchmaker 7kp4, chain A (#3) with
    5681 fold_cpe17_noendtail_seed15948213_model_2.cif, chain A (#37), sequence
    5682 alignment score = 883.1 
    5683 RMSD between 146 pruned atom pairs is 0.804 angstroms; (across all 182 pairs:
    5684 1.798) 
    5685  
    5686 Matchmaker 7kp4, chain A (#3) with
    5687 fold_cpe17_noendtail_seed15948213_model_3.cif, chain A (#38), sequence
    5688 alignment score = 902.9 
    5689 RMSD between 149 pruned atom pairs is 0.826 angstroms; (across all 182 pairs:
    5690 1.805) 
    5691  
    5692 Matchmaker 7kp4, chain A (#3) with
    5693 fold_cpe17_noendtail_seed15948213_model_4.cif, chain A (#39), sequence
    5694 alignment score = 895.1 
    5695 RMSD between 147 pruned atom pairs is 0.811 angstroms; (across all 182 pairs:
    5696 1.768) 
    5697  
    5698 
    5699 > select clear
    5700 
    5701 > select #38/B:1
    5702 
    5703 8 atoms, 7 bonds, 1 residue, 1 model selected 
    5704 
    5705 > select down
    5706 
    5707 8 atoms, 7 bonds, 1 residue, 1 model selected 
    5708 
    5709 > select up
    5710 
    5711 69 atoms, 71 bonds, 9 residues, 1 model selected 
    5712 
    5713 > select add #33/B:1
    5714 
    5715 77 atoms, 78 bonds, 10 residues, 2 models selected 
    5716 
    5717 > select up
    5718 
    5719 156 atoms, 161 bonds, 20 residues, 2 models selected 
    5720 
    5721 > select add #39/B:1
    5722 
    5723 164 atoms, 168 bonds, 21 residues, 3 models selected 
    5724 
    5725 > select up
    5726 
    5727 225 atoms, 232 bonds, 29 residues, 3 models selected 
    5728 
    5729 > select add #34/B:1
    5730 
    5731 233 atoms, 239 bonds, 30 residues, 4 models selected 
    5732 
    5733 > select up
    5734 
    5735 287 atoms, 295 bonds, 37 residues, 4 models selected 
    5736 
    5737 > select up
    5738 
    5739 576 atoms, 596 bonds, 68 residues, 4 models selected 
    5740 
    5741 > select up
    5742 
    5743 6036 atoms, 6148 bonds, 812 residues, 4 models selected 
    5744 
    5745 > select down
    5746 
    5747 576 atoms, 596 bonds, 68 residues, 4 models selected 
    5748 
    5749 > select add #32/B:2
    5750 
    5751 582 atoms, 601 bonds, 69 residues, 5 models selected 
    5752 
    5753 > select up
    5754 
    5755 645 atoms, 667 bonds, 77 residues, 5 models selected 
    5756 
    5757 > select up
    5758 
    5759 720 atoms, 745 bonds, 85 residues, 5 models selected 
    5760 
    5761 > select up
    5762 
    5763 7545 atoms, 7685 bonds, 1015 residues, 5 models selected 
    5764 
    5765 > select down
    5766 
    5767 720 atoms, 745 bonds, 85 residues, 5 models selected 
    5768 
    5769 > select add #36/B:1
    5770 
    5771 728 atoms, 752 bonds, 86 residues, 6 models selected 
    5772 
    5773 > select up
    5774 
    5775 807 atoms, 835 bonds, 96 residues, 6 models selected 
    5776 
    5777 > select up
    5778 
    5779 864 atoms, 894 bonds, 102 residues, 6 models selected 
    5780 
    5781 > select up
    5782 
    5783 9054 atoms, 9222 bonds, 1218 residues, 6 models selected 
    5784 
    5785 > select down
    5786 
    5787 864 atoms, 894 bonds, 102 residues, 6 models selected 
    5788 
    5789 > select add #30/B:1
    5790 
    5791 872 atoms, 901 bonds, 103 residues, 7 models selected 
    5792 
    5793 > select up
    5794 
    5795 1008 atoms, 1043 bonds, 119 residues, 7 models selected 
    5796 
    5797 > select up
    5798 
    5799 10563 atoms, 10759 bonds, 1421 residues, 7 models selected 
    5800 
    5801 > select down
    5802 
    5803 1008 atoms, 1043 bonds, 119 residues, 7 models selected 
    5804 
    5805 > hbonds sel color #00ff05 dashes 6 restrict cross interModel false distSlop
    5806 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    5807 
    5808 36 hydrogen bonds found 
    5809 
    5810 > select clear
    5811 
    5812 > hide #31 models
    5813 
    5814 > hide #!32 models
    5815 
    5816 > hide #!33 models
    5817 
    5818 > hide #!34 models
    5819 
    5820 > hide #35 models
    5821 
    5822 > hide #!36 models
    5823 
    5824 > hide #37 models
    5825 
    5826 > hide #!38 models
    5827 
    5828 > hide #!39 models
    5829 
    5830 > show #!15 models
    5831 
    5832 > hide #!30 models
    5833 
    5834 > show #31 models
    5835 
    5836 > show #!32 models
    5837 
    5838 > hide #31 models
    5839 
    5840 > show #31 models
    5841 
    5842 > show #!33 models
    5843 
    5844 > hide #!32 models
    5845 
    5846 > hide #!33 models
    5847 
    5848 > hide #31 models
    5849 
    5850 > show #!30 models
    5851 
    5852 > hide #!15 models
    5853 
    5854 > show #21 models
    5855 
    5856 > hide #21 models
    5857 
    5858 > show #!9 models
    5859 
    5860 > hide #!9 models
    5861 
    5862 > show #10 models
    5863 
    5864 > hide #10 models
    5865 
    5866 > show #11 models
    5867 
    5868 > hide #11 models
    5869 
    5870 > show #12 models
    5871 
    5872 > hide #12 models
    5873 
    5874 > show #13 models
    5875 
    5876 > hide #13 models
    5877 
    5878 > show #!100 models
    5879 
    5880 > hide #!30 models
    5881 
    5882 > show #31 models
    5883 
    5884 > select #31/B:13
    5885 
    5886 8 atoms, 7 bonds, 1 residue, 1 model selected 
    5887 
    5888 > select up
    5889 
    5890 27 atoms, 27 bonds, 3 residues, 1 model selected 
    5891 
    5892 > select up
    5893 
    5894 144 atoms, 149 bonds, 17 residues, 1 model selected 
    5895 
    5896 > hbonds sel color #00ff05 dashes 6 restrict cross interModel false distSlop
    5897 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    5898 
    5899 11 hydrogen bonds found 
    5900 
    5901 > hide #!100.1 models
    5902 
    5903 > show #!100.1 models
    5904 
    5905 > hide #!100.1 models
    5906 
    5907 > show #!100.1 models
    5908 
    5909 > hide #!100.1 models
    5910 
    5911 > show #!100.1 models
    5912 
    5913 > hide #!100.1 models
    5914 
    5915 > show #!100.1 models
    5916 
    5917 > hide #!100.1 models
    5918 
    5919 > show #!32 models
    5920 
    5921 > hide #!31 models
    5922 
    5923 > hide #!32 models
    5924 
    5925 > show #!33 models
    5926 
    5927 > show #!100.1 models
    5928 
    5929 > hide #!100.1 models
    5930 
    5931 > hide #!33 models
    5932 
    5933 > show #!34 models
    5934 
    5935 > hide #!34 models
    5936 
    5937 > show #35 models
    5938 
    5939 > select #35/B:17
    5940 
    5941 12 atoms, 12 bonds, 1 residue, 1 model selected 
    5942 
    5943 > select up
    5944 
    5945 30 atoms, 30 bonds, 3 residues, 1 model selected 
    5946 
    5947 > select up
    5948 
    5949 144 atoms, 149 bonds, 17 residues, 1 model selected 
    5950 
    5951 > hbonds sel color #00ff05 dashes 6 restrict cross interModel false distSlop
    5952 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    5953 
    5954 9 hydrogen bonds found 
    5955 
    5956 > show #!36 models
    5957 
    5958 > hide #!36 models
    5959 
    5960 > show #!36 models
    5961 
    5962 > hide #!35 models
    5963 
    5964 > select #36/B:9
    5965 
    5966 7 atoms, 7 bonds, 1 residue, 1 model selected 
    5967 
    5968 > select up
    5969 
    5970 87 atoms, 90 bonds, 11 residues, 1 model selected 
    5971 
    5972 > select up
    5973 
    5974 144 atoms, 149 bonds, 17 residues, 1 model selected 
    5975 
    5976 > show #37 models
    5977 
    5978 > hide #!36 models
    5979 
    5980 > show #!38 models
    5981 
    5982 > hide #37 models
    5983 
    5984 > show #!39 models
    5985 
    5986 > hide #!38 models
    5987 
    5988 > hide #!39 models
    5989 
    5990 > open
    5991 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/cpe30_mt2_noendtail_seed237811399/fold_cpe30_mt2_noendtail_seed237811399_model_0.cif
    5992 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/cpe30_mt2_noendtail_seed237811399/fold_cpe30_mt2_noendtail_seed237811399_model_1.cif
    5993 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/cpe30_mt2_noendtail_seed237811399/fold_cpe30_mt2_noendtail_seed237811399_model_2.cif
    5994 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/cpe30_mt2_noendtail_seed237811399/fold_cpe30_mt2_noendtail_seed237811399_model_3.cif
    5995 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/cpe30_mt2_noendtail_seed237811399/fold_cpe30_mt2_noendtail_seed237811399_model_4.cif
    5996 
    5997 Chain information for fold_cpe30_mt2_noendtail_seed237811399_model_0.cif #50 
    5998 --- 
    5999 Chain | Description 
    6000 A | . 
    6001 B | . 
    6002  
    6003 Chain information for fold_cpe30_mt2_noendtail_seed237811399_model_1.cif #51 
    6004 --- 
    6005 Chain | Description 
    6006 A | . 
    6007 B | . 
    6008  
    6009 Chain information for fold_cpe30_mt2_noendtail_seed237811399_model_2.cif #52 
    6010 --- 
    6011 Chain | Description 
    6012 A | . 
    6013 B | . 
    6014  
    6015 Chain information for fold_cpe30_mt2_noendtail_seed237811399_model_3.cif #53 
    6016 --- 
    6017 Chain | Description 
    6018 A | . 
    6019 B | . 
    6020  
    6021 Chain information for fold_cpe30_mt2_noendtail_seed237811399_model_4.cif #54 
    6022 --- 
    6023 Chain | Description 
    6024 A | . 
    6025 B | . 
    6026  
    6027 Computing secondary structure 
    6028 
    6029 > ui tool show Matchmaker
    6030 
    6031 > matchmaker #50-54 to #3
    6032 
    6033 Computing secondary structure 
    6034 Parameters 
    6035 --- 
    6036 Chain pairing | bb 
    6037 Alignment algorithm | Needleman-Wunsch 
    6038 Similarity matrix | BLOSUM-62 
    6039 SS fraction | 0.3 
    6040 Gap open (HH/SS/other) | 18/18/6 
    6041 Gap extend | 1 
    6042 SS matrix |  |  | H | S | O 
    6043 ---|---|---|--- 
    6044 H | 6 | -9 | -6 
    6045 S |  | 6 | -6 
    6046 O |  |  | 4 
    6047 Iteration cutoff | 2 
    6048  
    6049 Matchmaker 7kp4, chain A (#3) with
    6050 fold_cpe30_mt2_noendtail_seed237811399_model_0.cif, chain A (#50), sequence
    6051 alignment score = 902.9 
    6052 RMSD between 150 pruned atom pairs is 0.811 angstroms; (across all 182 pairs:
    6053 1.685) 
    6054  
    6055 Matchmaker 7kp4, chain A (#3) with
    6056 fold_cpe30_mt2_noendtail_seed237811399_model_1.cif, chain A (#51), sequence
    6057 alignment score = 896.9 
    6058 RMSD between 150 pruned atom pairs is 0.813 angstroms; (across all 182 pairs:
    6059 2.007) 
    6060  
    6061 Matchmaker 7kp4, chain A (#3) with
    6062 fold_cpe30_mt2_noendtail_seed237811399_model_2.cif, chain A (#52), sequence
    6063 alignment score = 905.9 
    6064 RMSD between 149 pruned atom pairs is 0.790 angstroms; (across all 182 pairs:
    6065 1.748) 
    6066  
    6067 Matchmaker 7kp4, chain A (#3) with
    6068 fold_cpe30_mt2_noendtail_seed237811399_model_3.cif, chain A (#53), sequence
    6069 alignment score = 905.9 
    6070 RMSD between 147 pruned atom pairs is 0.807 angstroms; (across all 182 pairs:
    6071 1.903) 
    6072  
    6073 Matchmaker 7kp4, chain A (#3) with
    6074 fold_cpe30_mt2_noendtail_seed237811399_model_4.cif, chain A (#54), sequence
    6075 alignment score = 895.1 
    6076 RMSD between 145 pruned atom pairs is 0.829 angstroms; (across all 182 pairs:
    6077 1.919) 
    6078  
    6079 
    6080 > hide #!100 models
    6081 
    6082 > hide #54 models
    6083 
    6084 > hide #53 models
    6085 
    6086 > hide #52 models
    6087 
    6088 > hide #51 models
    6089 
    6090 > show #51 models
    6091 
    6092 > hide #50 models
    6093 
    6094 > hide #51 models
    6095 
    6096 > show #52 models
    6097 
    6098 > show #53 models
    6099 
    6100 > show #54 models
    6101 
    6102 > close #50-54
    6103 
    6104 > open
    6105 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/cpe30_mt2_noendtail_seed289341117/fold_cpe30_mt2_noendtail_seed289341117_model_0.cif
    6106 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/cpe30_mt2_noendtail_seed289341117/fold_cpe30_mt2_noendtail_seed289341117_model_1.cif
    6107 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/cpe30_mt2_noendtail_seed289341117/fold_cpe30_mt2_noendtail_seed289341117_model_2.cif
    6108 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/cpe30_mt2_noendtail_seed289341117/fold_cpe30_mt2_noendtail_seed289341117_model_3.cif
    6109 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/AF3/cpe30_mt2_noendtail_seed289341117/fold_cpe30_mt2_noendtail_seed289341117_model_4.cif
    6110 
    6111 Chain information for fold_cpe30_mt2_noendtail_seed289341117_model_0.cif #50 
    6112 --- 
    6113 Chain | Description 
    6114 A | . 
    6115 B | . 
    6116  
    6117 Chain information for fold_cpe30_mt2_noendtail_seed289341117_model_1.cif #51 
    6118 --- 
    6119 Chain | Description 
    6120 A | . 
    6121 B | . 
    6122  
    6123 Chain information for fold_cpe30_mt2_noendtail_seed289341117_model_2.cif #52 
    6124 --- 
    6125 Chain | Description 
    6126 A | . 
    6127 B | . 
    6128  
    6129 Chain information for fold_cpe30_mt2_noendtail_seed289341117_model_3.cif #53 
    6130 --- 
    6131 Chain | Description 
    6132 A | . 
    6133 B | . 
    6134  
    6135 Chain information for fold_cpe30_mt2_noendtail_seed289341117_model_4.cif #54 
    6136 --- 
    6137 Chain | Description 
    6138 A | . 
    6139 B | . 
    6140  
    6141 Computing secondary structure 
    6142 
    6143 > ui tool show Matchmaker
    6144 
    6145 > matchmaker #50-54 to #3
    6146 
    6147 Computing secondary structure 
    6148 Parameters 
    6149 --- 
    6150 Chain pairing | bb 
    6151 Alignment algorithm | Needleman-Wunsch 
    6152 Similarity matrix | BLOSUM-62 
    6153 SS fraction | 0.3 
    6154 Gap open (HH/SS/other) | 18/18/6 
    6155 Gap extend | 1 
    6156 SS matrix |  |  | H | S | O 
    6157 ---|---|---|--- 
    6158 H | 6 | -9 | -6 
    6159 S |  | 6 | -6 
    6160 O |  |  | 4 
    6161 Iteration cutoff | 2 
    6162  
    6163 Matchmaker 7kp4, chain A (#3) with
    6164 fold_cpe30_mt2_noendtail_seed289341117_model_0.cif, chain A (#50), sequence
    6165 alignment score = 893.9 
    6166 RMSD between 156 pruned atom pairs is 0.829 angstroms; (across all 182 pairs:
    6167 1.643) 
    6168  
    6169 Matchmaker 7kp4, chain A (#3) with
    6170 fold_cpe30_mt2_noendtail_seed289341117_model_1.cif, chain A (#51), sequence
    6171 alignment score = 898.1 
    6172 RMSD between 148 pruned atom pairs is 0.816 angstroms; (across all 182 pairs:
    6173 1.803) 
    6174  
    6175 Matchmaker 7kp4, chain A (#3) with
    6176 fold_cpe30_mt2_noendtail_seed289341117_model_2.cif, chain A (#52), sequence
    6177 alignment score = 899.9 
    6178 RMSD between 146 pruned atom pairs is 0.790 angstroms; (across all 182 pairs:
    6179 1.781) 
    6180  
    6181 Matchmaker 7kp4, chain A (#3) with
    6182 fold_cpe30_mt2_noendtail_seed289341117_model_3.cif, chain A (#53), sequence
    6183 alignment score = 905.9 
    6184 RMSD between 147 pruned atom pairs is 0.800 angstroms; (across all 182 pairs:
    6185 1.883) 
    6186  
    6187 Matchmaker 7kp4, chain A (#3) with
    6188 fold_cpe30_mt2_noendtail_seed289341117_model_4.cif, chain A (#54), sequence
    6189 alignment score = 887.9 
    6190 RMSD between 148 pruned atom pairs is 0.791 angstroms; (across all 182 pairs:
    6191 1.860) 
    6192  
    6193 
    6194 > hide #51 models
    6195 
    6196 > hide #53 models
    6197 
    6198 > hide #52 models
    6199 
    6200 > hide #54 models
    6201 
    6202 > show #51 models
    6203 
    6204 > hide #50 models
    6205 
    6206 > show #52 models
    6207 
    6208 > hide #51 models
    6209 
    6210 > hide #52 models
    6211 
    6212 > show #53 models
    6213 
    6214 > hide #53 models
    6215 
    6216 > show #54 models
    6217 
    6218 > show #53 models
    6219 
    6220 > hide #53 models
    6221 
    6222 > select #54/A:44
    6223 
    6224 9 atoms, 8 bonds, 1 residue, 1 model selected 
    6225 
    6226 > select up
    6227 
    6228 47 atoms, 48 bonds, 5 residues, 1 model selected 
    6229 
    6230 > select clear
    6231 
    6232 > select #54/B:1
    6233 
    6234 8 atoms, 7 bonds, 1 residue, 1 model selected 
    6235 
    6236 > select up
    6237 
    6238 97 atoms, 99 bonds, 12 residues, 1 model selected 
    6239 
    6240 > hbonds sel color #00ff05 dashes 6 restrict cross interModel false distSlop
    6241 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    6242 
    6243 5 hydrogen bonds found 
    6244 
    6245 > show #!100.1 models
    6246 
    6247 > hide #!54 models
    6248 
    6249 > show #!54 models
    6250 
    6251 > hide #!100.1 models
    6252 
    6253 > hide #!100 models
    6254 
    6255 > hide #!54 models
    6256 
    6257 > open
    6258 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Design1/CABS-
    6259 > Cpe17_model_1.pdb
    6260 
    6261 Summary of feedback from opening
    6262 /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Design1/CABS-
    6263 Cpe17_model_1.pdb 
    6264 --- 
    6265 warning | Ignored bad PDB record found on line 14 
    6266 .o8NynO.B99990001_fit.pdb 
    6267  
    6268 Chain information for CABS-Cpe17_model_1.pdb #55 
    6269 --- 
    6270 Chain | Description 
    6271 A | No description available 
    6272 B | No description available 
    6273  
    6274 
    6275 > open
    6276 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Design1/CABS-
    6277 > Cpe17_model_2.pdb
    6278 
    6279 Summary of feedback from opening
    6280 /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Design1/CABS-
    6281 Cpe17_model_2.pdb 
    6282 --- 
    6283 warning | Ignored bad PDB record found on line 12 
    6284 .YKhQl4.B99990003_fit.pdb 
    6285  
    6286 Chain information for CABS-Cpe17_model_2.pdb #56 
    6287 --- 
    6288 Chain | Description 
    6289 A | No description available 
    6290 B | No description available 
    6291  
    6292 
    6293 > open
    6294 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Design1/CABS-
    6295 > Cpe17_model_3.pdb
    6296 
    6297 Summary of feedback from opening
    6298 /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Design1/CABS-
    6299 Cpe17_model_3.pdb 
    6300 --- 
    6301 warning | Ignored bad PDB record found on line 14 
    6302 .GHmlJQ.B99990003_fit.pdb 
    6303  
    6304 Chain information for CABS-Cpe17_model_3.pdb #57 
    6305 --- 
    6306 Chain | Description 
    6307 A | No description available 
    6308 B | No description available 
    6309  
    6310 
    6311 > open
    6312 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Design1/CABS-
    6313 > Cpe17_model_5.pdb
    6314 
    6315 Summary of feedback from opening
    6316 /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Design1/CABS-
    6317 Cpe17_model_5.pdb 
    6318 --- 
    6319 warning | Ignored bad PDB record found on line 12 
    6320 .hqVbRV.B99990003_fit.pdb 
    6321  
    6322 Chain information for CABS-Cpe17_model_5.pdb #58 
    6323 --- 
    6324 Chain | Description 
    6325 A | No description available 
    6326 B | No description available 
    6327  
    6328 
    6329 > open
    6330 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Design1/CABS-
    6331 > Cpe17_model_6.pdb
    6332 
    6333 Summary of feedback from opening
    6334 /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Design1/CABS-
    6335 Cpe17_model_6.pdb 
    6336 --- 
    6337 warning | Ignored bad PDB record found on line 15 
    6338 .CoTr5e.B99990001_fit.pdb 
    6339  
    6340 Chain information for CABS-Cpe17_model_6.pdb #59 
    6341 --- 
    6342 Chain | Description 
    6343 A | No description available 
    6344 B | No description available 
    6345  
    6346 
    6347 > open
    6348 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Design1/CABS-
    6349 > Cpe17_model_7.pdb
    6350 
    6351 Summary of feedback from opening
    6352 /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Design1/CABS-
    6353 Cpe17_model_7.pdb 
    6354 --- 
    6355 warning | Ignored bad PDB record found on line 12 
    6356 .YdQLzg.B99990003_fit.pdb 
    6357  
    6358 Chain information for CABS-Cpe17_model_7.pdb #60 
    6359 --- 
    6360 Chain | Description 
    6361 A | No description available 
    6362 B | No description available 
    6363  
    6364 
    6365 > open
    6366 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Design1/CABS-
    6367 > Cpe17_model_8.pdb
    6368 
    6369 Summary of feedback from opening
    6370 /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Design1/CABS-
    6371 Cpe17_model_8.pdb 
    6372 --- 
    6373 warning | Ignored bad PDB record found on line 13 
    6374 .wamPcx.B99990003_fit.pdb 
    6375  
    6376 Chain information for CABS-Cpe17_model_8.pdb #61 
    6377 --- 
    6378 Chain | Description 
    6379 A | No description available 
    6380 B | No description available 
    6381  
    6382 
    6383 > open
    6384 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Design1/CABS-
    6385 > Cpe17_model_10.pdb
    6386 
    6387 Summary of feedback from opening
    6388 /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Design1/CABS-
    6389 Cpe17_model_10.pdb 
    6390 --- 
    6391 warning | Ignored bad PDB record found on line 12 
    6392 .DtuU9F.B99990003_fit.pdb 
    6393  
    6394 Chain information for CABS-Cpe17_model_10.pdb #62 
    6395 --- 
    6396 Chain | Description 
    6397 A | No description available 
    6398 B | No description available 
    6399  
    6400 
    6401 > select #62/B:18
    6402 
    6403 11 atoms, 10 bonds, 1 residue, 1 model selected 
    6404 
    6405 > select up
    6406 
    6407 150 atoms, 153 bonds, 19 residues, 1 model selected 
    6408 
    6409 > select add #58/B:19
    6410 
    6411 157 atoms, 159 bonds, 20 residues, 2 models selected 
    6412 
    6413 > select up
    6414 
    6415 300 atoms, 306 bonds, 38 residues, 2 models selected 
    6416 
    6417 > select add #55/B:19
    6418 
    6419 307 atoms, 312 bonds, 39 residues, 3 models selected 
    6420 
    6421 > select up
    6422 
    6423 414 atoms, 423 bonds, 52 residues, 3 models selected 
    6424 
    6425 > select add #59/B:16
    6426 
    6427 422 atoms, 430 bonds, 53 residues, 4 models selected 
    6428 
    6429 > select up
    6430 
    6431 528 atoms, 540 bonds, 66 residues, 4 models selected 
    6432 
    6433 > select add #57/B:14
    6434 
    6435 536 atoms, 547 bonds, 67 residues, 5 models selected 
    6436 
    6437 > select up
    6438 
    6439 620 atoms, 635 bonds, 77 residues, 5 models selected 
    6440 
    6441 > select add #57/B:3
    6442 
    6443 627 atoms, 641 bonds, 78 residues, 5 models selected 
    6444 
    6445 > select up
    6446 
    6447 670 atoms, 685 bonds, 84 residues, 5 models selected 
    6448 
    6449 > hbonds sel color #ff00d7 dashes 6 restrict cross interModel false distSlop
    6450 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    6451 
    6452 61 hydrogen bonds found 
    6453 
    6454 > hide #!62 models
    6455 
    6456 > hide #61 models
    6457 
    6458 > hide #60 models
    6459 
    6460 > hide #!59 models
    6461 
    6462 > hide #!58 models
    6463 
    6464 > hide #!57 models
    6465 
    6466 > hide #56 models
    6467 
    6468 > show #!30 models
    6469 
    6470 > hide #!30 models
    6471 
    6472 > show #!30 models
    6473 
    6474 > hide #!30 models
    6475 
    6476 > show #!31 models
    6477 
    6478 > show #!32 models
    6479 
    6480 > hide #!31 models
    6481 
    6482 > show #!33 models
    6483 
    6484 > show #!31 models
    6485 
    6486 > hide #!31 models
    6487 
    6488 > hide #!32 models
    6489 
    6490 > hide #!33 models
    6491 
    6492 > show #!34 models
    6493 
    6494 > hide #!34 models
    6495 
    6496 > show #!35 models
    6497 
    6498 > hide #!35 models
    6499 
    6500 > show #56 models
    6501 
    6502 > hide #56 models
    6503 
    6504 > select add #55
    6505 
    6506 2044 atoms, 2082 bonds, 13 pseudobonds, 271 residues, 6 models selected 
    6507 
    6508 > select subtract #55
    6509 
    6510 556 atoms, 568 bonds, 70 residues, 4 models selected 
    6511 
    6512 > select add #57
    6513 
    6514 1902 atoms, 1937 bonds, 19 pseudobonds, 253 residues, 5 models selected 
    6515 
    6516 > select subtract #57
    6517 
    6518 414 atoms, 423 bonds, 52 residues, 3 models selected 
    6519 
    6520 > select add #58
    6521 
    6522 1752 atoms, 1784 bonds, 8 pseudobonds, 234 residues, 4 models selected 
    6523 
    6524 > select subtract #58
    6525 
    6526 264 atoms, 270 bonds, 33 residues, 2 models selected 
    6527 
    6528 > select add #59
    6529 
    6530 1638 atoms, 1667 bonds, 14 pseudobonds, 220 residues, 3 models selected 
    6531 
    6532 > select subtract #59
    6533 
    6534 150 atoms, 153 bonds, 19 residues, 1 model selected 
    6535 
    6536 > select add #62
    6537 
    6538 1488 atoms, 1514 bonds, 7 pseudobonds, 201 residues, 2 models selected 
    6539 
    6540 > select subtract #62
    6541 
    6542 Nothing selected 
    6543 
    6544 > show #56 models
    6545 
    6546 > hide #!55 models
    6547 
    6548 > select #56/B:2
    6549 
    6550 8 atoms, 7 bonds, 1 residue, 1 model selected 
    6551 
    6552 > select up
    6553 
    6554 150 atoms, 153 bonds, 19 residues, 1 model selected 
    6555 
    6556 > hbonds sel color #ff00d7 dashes 6 restrict cross interModel false distSlop
    6557 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    6558 
    6559 18 hydrogen bonds found 
    6560 
    6561 > show #!55 models
    6562 
    6563 > hide #!56 models
    6564 
    6565 > show #!56 models
    6566 
    6567 > hide #!55 models
    6568 
    6569 > select add #56
    6570 
    6571 1488 atoms, 1514 bonds, 18 pseudobonds, 201 residues, 2 models selected 
    6572 
    6573 > select subtract #56
    6574 
    6575 Nothing selected 
    6576 
    6577 > hide #!56 models
    6578 
    6579 > show #!57 models
    6580 
    6581 > show #!58 models
    6582 
    6583 > hide #!57 models
    6584 
    6585 > show #!59 models
    6586 
    6587 > hide #!58 models
    6588 
    6589 > show #60 models
    6590 
    6591 > hide #!59 models
    6592 
    6593 > select #60/B:14
    6594 
    6595 8 atoms, 7 bonds, 1 residue, 1 model selected 
    6596 
    6597 > select up
    6598 
    6599 150 atoms, 153 bonds, 19 residues, 1 model selected 
    6600 
    6601 > hbonds sel color #ff00d7 dashes 6 restrict cross interModel false distSlop
    6602 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    6603 
    6604 8 hydrogen bonds found 
    6605 
    6606 > hide #!60 models
    6607 
    6608 > select add #60
    6609 
    6610 1488 atoms, 1514 bonds, 8 pseudobonds, 201 residues, 2 models selected 
    6611 
    6612 > show #61 models
    6613 
    6614 > select subtract #60
    6615 
    6616 Nothing selected 
    6617 
    6618 > select clear
    6619 
    6620 > select #61/B:13
    6621 
    6622 8 atoms, 7 bonds, 1 residue, 1 model selected 
    6623 
    6624 > select up
    6625 
    6626 106 atoms, 109 bonds, 13 residues, 1 model selected 
    6627 
    6628 > select up
    6629 
    6630 150 atoms, 153 bonds, 19 residues, 1 model selected 
    6631 
    6632 > hbonds sel color #ff00d7 dashes 6 restrict cross interModel false distSlop
    6633 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    6634 
    6635 12 hydrogen bonds found 
    6636 
    6637 > hide #!61 models
    6638 
    6639 > select add #61
    6640 
    6641 1488 atoms, 1514 bonds, 12 pseudobonds, 201 residues, 2 models selected 
    6642 
    6643 > select subtract #61
    6644 
    6645 Nothing selected 
    6646 
    6647 > show #!62 models
    6648 
    6649 > hide #!62 models
    6650 
    6651 > show #!62 models
    6652 
    6653 > hide #!62 models
    6654 
    6655 > show #!55 models
    6656 
    6657 > show #!100 models
    6658 
    6659 > hide #!55 models
    6660 
    6661 > show #!100.1 models
    6662 
    6663 > hide #!100 models
    6664 
    6665 > show #!100 models
    6666 
    6667 > show #!55 models
    6668 
    6669 > hide #!55 models
    6670 
    6671 > show #!56 models
    6672 
    6673 > hide #!100 models
    6674 
    6675 > select #56/B:14
    6676 
    6677 8 atoms, 7 bonds, 1 residue, 1 model selected 
    6678 
    6679 > select up
    6680 
    6681 150 atoms, 153 bonds, 19 residues, 1 model selected 
    6682 
    6683 > select up
    6684 
    6685 1488 atoms, 1514 bonds, 201 residues, 1 model selected 
    6686 
    6687 > select down
    6688 
    6689 150 atoms, 153 bonds, 19 residues, 1 model selected 
    6690 
    6691 > color sel magenta
    6692 
    6693 > color sel byhetero
    6694 
    6695 > hbonds sel color #00fdff dashes 6 interModel false distSlop 0.8 angleSlop
    6696 > 60.0 reveal true retainCurrent true
    6697 
    6698 32 hydrogen bonds found 
    6699 
    6700 > hide #!100.1 models
    6701 
    6702 > show #!100.1 models
    6703 
    6704 > hide #!100.1 models
    6705 
    6706 > show #!100.1 models
    6707 
    6708 > rename #56 CABS-Cpe17_model_2.pdb_PAS-MAL
    6709 
    6710 > show #!55 models
    6711 
    6712 > hide #!56 models
    6713 
    6714 > hide #!100 models
    6715 
    6716 > hide #!55 models
    6717 
    6718 > show #!56 models
    6719 
    6720 > open /Users/adaina/Downloads/ceac02308cfdb11_model_2.pdb
    6721 
    6722 Summary of feedback from opening
    6723 /Users/adaina/Downloads/ceac02308cfdb11_model_2.pdb 
    6724 --- 
    6725 warning | Ignored bad PDB record found on line 10 
    6726 .2BFnv1.B99990001_fit.pdb 
    6727  
    6728 Chain information for ceac02308cfdb11_model_2.pdb #63 
    6729 --- 
    6730 Chain | Description 
    6731 A | No description available 
    6732 B | No description available 
    6733  
    6734 
    6735 > close #63#55-62
    6736 
    6737 > open
    6738 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Cpe-17/CABS_Cpe-17_model_1.pdb
    6739 
    6740 Summary of feedback from opening
    6741 /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Cpe-17/CABS_Cpe-17_model_1.pdb 
    6742 --- 
    6743 warning | Ignored bad PDB record found on line 13 
    6744 .7DEu6M.B99990001_fit.pdb 
    6745  
    6746 Chain information for CABS_Cpe-17_model_1.pdb #55 
    6747 --- 
    6748 Chain | Description 
    6749 A | No description available 
    6750 B | No description available 
    6751  
    6752 
    6753 > open
    6754 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Cpe-17/CABS_Cpe-17_model_2.pdb
    6755 
    6756 Summary of feedback from opening
    6757 /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Cpe-17/CABS_Cpe-17_model_2.pdb 
    6758 --- 
    6759 warning | Ignored bad PDB record found on line 10 
    6760 .2BFnv1.B99990001_fit.pdb 
    6761  
    6762 Chain information for CABS_Cpe-17_model_2.pdb #56 
    6763 --- 
    6764 Chain | Description 
    6765 A | No description available 
    6766 B | No description available 
    6767  
    6768 
    6769 > open
    6770 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Cpe-17/CABS_Cpe-17_model_3.pdb
    6771 
    6772 Summary of feedback from opening
    6773 /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Cpe-17/CABS_Cpe-17_model_3.pdb 
    6774 --- 
    6775 warning | Ignored bad PDB record found on line 14 
    6776 .aoUxAv.B99990001_fit.pdb 
    6777  
    6778 Chain information for CABS_Cpe-17_model_3.pdb #57 
    6779 --- 
    6780 Chain | Description 
    6781 A | No description available 
    6782 B | No description available 
    6783  
    6784 
    6785 > open
    6786 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Cpe-17/CABS_Cpe-17_model_4.pdb
    6787 
    6788 Summary of feedback from opening
    6789 /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Cpe-17/CABS_Cpe-17_model_4.pdb 
    6790 --- 
    6791 warning | Ignored bad PDB record found on line 13 
    6792 .hoSWaB.B99990001_fit.pdb 
    6793  
    6794 Chain information for CABS_Cpe-17_model_4.pdb #58 
    6795 --- 
    6796 Chain | Description 
    6797 A | No description available 
    6798 B | No description available 
    6799  
    6800 
    6801 > open
    6802 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Cpe-17/CABS_Cpe-17_model_5.pdb
    6803 
    6804 Summary of feedback from opening
    6805 /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/Structures/CABSdock/CABSdock_Cpe-17/CABS_Cpe-17_model_5.pdb 
    6806 --- 
    6807 warning | Ignored bad PDB record found on line 15 
    6808 .EDuUZe.B99990002_fit.pdb 
    6809  
    6810 Chain information for CABS_Cpe-17_model_5.pdb #59 
    6811 --- 
    6812 Chain | Description 
    6813 A | No description available 
    6814 B | No description available 
    6815  
    6816 
    6817 > hide #55 models
    6818 
    6819 > hide #56 models
    6820 
    6821 > hide #57 models
    6822 
    6823 > hide #58 models
    6824 
    6825 > hide #59 models
    6826 
    6827 > hide #!100.1 models
    6828 
    6829 > show #!6 models
    6830 
    6831 > hide #8.1 models
    6832 
    6833 > show #8.1 models
    6834 
    6835 > hide #8.1 models
    6836 
    6837 > show #8.1 models
    6838 
    6839 > hide #!8 models
    6840 
    6841 > show #!7 models
    6842 
    6843 > hide #!7 models
    6844 
    6845 > hide #!6 models
    6846 
    6847 > show #!7 models
    6848 
    6849 > show #3.1 models
    6850 
    6851 > hide #3.1 models
    6852 
    6853 > show #3.1 models
    6854 
    6855 > hide #!3 models
    6856 
    6857 > show #!3 models
    6858 
    6859 > hide #!3 models
    6860 
    6861 > show #!3 models
    6862 
    6863 > hide #!3 models
    6864 
    6865 > show #!3 models
    6866 
    6867 > hide #!3 models
    6868 
    6869 > show #!3 models
    6870 
    6871 > hide #!3 models
    6872 
    6873 > show #!3 models
    6874 
    6875 > hide #3.1 models
    6876 
    6877 > hide #!3 models
    6878 
    6879 > show #!100.1 models
    6880 
    6881 > select #100.1
    6882 
    6883 1318 atoms, 1342 bonds, 11 pseudobonds, 182 residues, 2 models selected 
    6884 
    6885 > show sel surfaces
    6886 
    6887 > hide #!7 models
    6888 
    6889 > hide #8.1 models
    6890 
    6891 > hide #100.1.2 models
    6892 
    6893 > show #100.1.2 models
    6894 
    6895 > hide #100.1.2 models
    6896 
    6897 > show #100.1.2 models
    6898 
    6899 > hide #100.1.2 models
    6900 
    6901 > show #100.2 models
    6902 
    6903 > hide #100.2 models
    6904 
    6905 > show #100.2 models
    6906 
    6907 > hide #100.2 models
    6908 
    6909 > show #3.2 models
    6910 
    6911 > hide #3.2 models
    6912 
    6913 > show #3.1 models
    6914 
    6915 > hide #!100.1 models
    6916 
    6917 > show #!100.1 models
    6918 
    6919 > hide #!100.1 models
    6920 
    6921 > show #100.1.2 models
    6922 
    6923 > select subtract #100.1.2
    6924 
    6925 1 model selected 
    6926 
    6927 > hide #3.1 models
    6928 
    6929 > show #3.1 models
    6930 
    6931 > hide #100.1.2 models
    6932 
    6933 > hide #3.1 models
    6934 
    6935 > show #3.1 models
    6936 
    6937 > select ~sel & ##selected
    6938 
    6939 Nothing selected 
    6940 
    6941 > mcopy #3.1 #100.1.2
    6942 
    6943 Missing required "to_atoms" argument 
    6944 
    6945 > hide #3.1 models
    6946 
    6947 > show #100.1.2 models
    6948 
    6949 > ui tool show "Color Actions"
    6950 
    6951 > color byhetero target s
    6952 
    6953 > color byelement target s
    6954 
    6955 > color bychain target s
    6956 
    6957 > color bypolymer target s
    6958 
    6959 > combine #3.1 #100.1.2
    6960 
    6961 No structures specified 
    6962 
    6963 > show #3.1 models
    6964 
    6965 > hide #!3 models
    6966 
    6967 > hide #3.1 models
    6968 
    6969 > show #!3 models
    6970 
    6971 > show #3.1 models
    6972 
    6973 > hide #3.1 models
    6974 
    6975 > hide #100.1.2 models
    6976 
    6977 > hide #!100.1 models
    6978 
    6979 > hide #!100 models
    6980 
    6981 > hide #!3 models
    6982 
    6983 > show #!3 models
    6984 
    6985 > show #3.1 models
    6986 
    6987 > select add #3.1
    6988 
    6989 1318 atoms, 182 residues, 1 model selected 
    6990 
    6991 > hide #!3 models
    6992 
    6993 > show #!3 models
    6994 
    6995 > color surfaces #3 atoms #3
    6996 
    6997 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
    6998 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
    6999 'fromcartoons', 'fromribbons', or 'random' or a keyword 
    7000 
    7001 > color surfaces #3 fromatoms #3
    7002 
    7003 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
    7004 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
    7005 'fromcartoons', 'fromribbons', or 'random' or a keyword 
    7006 
    7007 > color surfaces #3 fromatoms
    7008 
    7009 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
    7010 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
    7011 'fromcartoons', 'fromribbons', or 'random' or a keyword 
    7012 
    7013 > color #3.1 fromatoms
    7014 
    7015 > color #100.1.2 fromatoms
    7016 
    7017 > hide #3.1 models
    7018 
    7019 > hide #!3 models
    7020 
    7021 > select subtract #3.1
    7022 
    7023 1 model selected 
    7024 
    7025 > select add #3
    7026 
    7027 2375 atoms, 2421 bonds, 251 pseudobonds, 316 residues, 4 models selected 
    7028 
    7029 > select subtract #3
    7030 
    7031 2 models selected 
    7032 
    7033 > show #100.1.2 models
    7034 
    7035 > show #!6 models
    7036 
    7037 > show #!7 models
    7038 
    7039 > hide #!6 models
    7040 
    7041 > hide #!7 models
    7042 
    7043 > show #!7 models
    7044 
    7045 > show #14.1 models
    7046 
    7047 > hide #!7 models
    7048 
    7049 > show #!14.2 models
    7050 
    7051 > hide #14.1 models
    7052 
    7053 > show #!9 models
    7054 
    7055 > hide #!9 models
    7056 
    7057 > show #!9 models
    7058 
    7059 > show #!6 models
    7060 
    7061 > hide #!6 models
    7062 
    7063 > show #!6 models
    7064 
    7065 > hide #!6 models
    7066 
    7067 > show #!8 models
    7068 
    7069 > hide #!8 models
    7070 
    7071 > show #!8 models
    7072 
    7073 > hide #!8 models
    7074 
    7075 > show #!7 models
    7076 
    7077 > hide #!7 models
    7078 
    7079 > show #!7 models
    7080 
    7081 > hide #!14 models
    7082 
    7083 > hide #!14.2 models
    7084 
    7085 > show #!14.2 models
    7086 
    7087 > hide #!14.2 models
    7088 
    7089 > show #!14.2 models
    7090 
    7091 > hide #!14.2 models
    7092 
    7093 > show #!14.2 models
    7094 
    7095 > hide #!9 models
    7096 
    7097 > hide #!14 models
    7098 
    7099 > hide #!14.2 models
    7100 
    7101 > hide #!7 models
    7102 
    7103 > show #!20 models
    7104 
    7105 > hide #!20 models
    7106 
    7107 > show #!20 models
    7108 
    7109 > hide #!20 models
    7110 
    7111 > show #26 models
    7112 
    7113 > hide #26 models
    7114 
    7115 > show #50 models
    7116 
    7117 > hide #!100 models
    7118 
    7119 > show #59 models
    7120 
    7121 > hide #59 models
    7122 
    7123 > hide #!100.1 models
    7124 
    7125 > show #!100.1 models
    7126 
    7127 > show #59 models
    7128 
    7129 > hide #59 models
    7130 
    7131 > show #58 models
    7132 
    7133 > hide #58 models
    7134 
    7135 > show #56 models
    7136 
    7137 > hide #56 models
    7138 
    7139 > show #55 models
    7140 
    7141 > show #56 models
    7142 
    7143 > show #57 models
    7144 
    7145 > show #58 models
    7146 
    7147 > show #59 models
    7148 
    7149 > hide #59 models
    7150 
    7151 > hide #58 models
    7152 
    7153 > hide #57 models
    7154 
    7155 > hide #56 models
    7156 
    7157 > select #55/B:1
    7158 
    7159 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7160 
    7161 > select up
    7162 
    7163 144 atoms, 149 bonds, 17 residues, 1 model selected 
    7164 
    7165 > select down
    7166 
    7167 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7168 
    7169 > select down
    7170 
    7171 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7172 
    7173 > select clear
    7174 
    7175 > hide #100.1.2 models
    7176 
    7177 > hide #55 models
    7178 
    7179 > show #55 models
    7180 
    7181 > hide #50 models
    7182 
    7183 > select #55/A:149
    7184 
    7185 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7186 
    7187 > select up
    7188 
    7189 57 atoms, 58 bonds, 8 residues, 1 model selected 
    7190 
    7191 > select sel @ select sel : select up
    7192 
    7193 51263 atoms, 40946 bonds, 859 pseudobonds, 6444 residues, 93 models selected 
    7194 
    7195 > select up
    7196 
    7197 104610 atoms, 95229 bonds, 859 pseudobonds, 13644 residues, 93 models selected 
    7198 
    7199 > select up
    7200 
    7201 104613 atoms, 95229 bonds, 859 pseudobonds, 13647 residues, 93 models selected 
    7202 
    7203 > select up
    7204 
    7205 120685 atoms, 122908 bonds, 1845 pseudobonds, 15723 residues, 93 models
    7206 selected 
    7207 
    7208 > select up
    7209 
    7210 120685 atoms, 122908 bonds, 1845 pseudobonds, 15723 residues, 99 models
    7211 selected 
    7212 
    7213 > select up
    7214 
    7215 120685 atoms, 122908 bonds, 1851 pseudobonds, 15723 residues, 100 models
    7216 selected 
    7217 
    7218 > select up
    7219 
    7220 120685 atoms, 122908 bonds, 1851 pseudobonds, 15723 residues, 102 models
    7221 selected 
    7222 
    7223 > select up
    7224 
    7225 120685 atoms, 122908 bonds, 1851 pseudobonds, 15723 residues, 102 models
    7226 selected 
    7227 
    7228 > select down
    7229 
    7230 120685 atoms, 122908 bonds, 405 pseudobonds, 15723 residues, 101 models
    7231 selected 
    7232 
    7233 > select down
    7234 
    7235 69365 atoms, 70654 bonds, 405 pseudobonds, 9037 residues, 77 models selected 
    7236 
    7237 > select down
    7238 
    7239 69365 atoms, 70654 bonds, 399 pseudobonds, 9037 residues, 60 models selected 
    7240 
    7241 > select down
    7242 
    7243 68047 atoms, 69312 bonds, 399 pseudobonds, 8855 residues, 59 models selected 
    7244 
    7245 > select down
    7246 
    7247 76993 atoms, 67113 bonds, 859 pseudobonds, 10064 residues, 65 models selected 
    7248 
    7249 > select down
    7250 
    7251 76990 atoms, 67113 bonds, 859 pseudobonds, 10061 residues, 76 models selected 
    7252 
    7253 > select down
    7254 
    7255 51263 atoms, 40946 bonds, 859 pseudobonds, 6444 residues, 93 models selected 
    7256 
    7257 > select down
    7258 
    7259 31641 atoms, 20749 bonds, 859 pseudobonds, 3993 residues, 93 models selected 
    7260 
    7261 > select down
    7262 
    7263 31303 atoms, 20408 bonds, 859 pseudobonds, 3951 residues, 93 models selected 
    7264 
    7265 > select down
    7266 
    7267 31303 atoms, 20408 bonds, 859 pseudobonds, 3951 residues, 93 models selected 
    7268 
    7269 > select down
    7270 
    7271 31303 atoms, 20408 bonds, 859 pseudobonds, 3951 residues, 93 models selected 
    7272 
    7273 > select down
    7274 
    7275 31303 atoms, 20408 bonds, 859 pseudobonds, 3951 residues, 93 models selected 
    7276 
    7277 > select down
    7278 
    7279 31303 atoms, 20408 bonds, 859 pseudobonds, 3951 residues, 93 models selected 
    7280 
    7281 > select down
    7282 
    7283 31303 atoms, 20408 bonds, 859 pseudobonds, 3951 residues, 93 models selected 
    7284 
    7285 > select down
    7286 
    7287 31303 atoms, 20408 bonds, 859 pseudobonds, 3951 residues, 93 models selected 
    7288 
    7289 > select clear
    7290 
    7291 > hide #!100 models
    7292 
    7293 > select clear
    7294 
    7295 > select #55/A:148
    7296 
    7297 12 atoms, 12 bonds, 1 residue, 1 model selected 
    7298 
    7299 > select up
    7300 
    7301 57 atoms, 58 bonds, 8 residues, 1 model selected 
    7302 
    7303 > select sel : select #55/B
    7304 
    7305 144 atoms, 149 bonds, 17 residues, 1 model selected 
    7306 
    7307 > select #55/A:150
    7308 
    7309 7 atoms, 7 bonds, 1 residue, 1 model selected 
    7310 
    7311 > select up
    7312 
    7313 57 atoms, 58 bonds, 8 residues, 1 model selected 
    7314 
    7315 > select intersect sel : select sel : show sel & #55 cartoons
    7316 
    7317 > show sel & #55 atoms
    7318 
    7319 > select #55/B:12
    7320 
    7321 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7322 
    7323 > select up
    7324 
    7325 144 atoms, 149 bonds, 17 residues, 1 model selected 
    7326 
    7327 > color sel orange
    7328 
    7329 > color sel byhetero
    7330 
    7331 > show #100.1.2 models
    7332 
    7333 > hide #100.1.2 models
    7334 
    7335 > hide #!100.1 models
    7336 
    7337 > hbonds sel color #00fdff dashes 6 interModel false distSlop 0.8 angleSlop
    7338 > 60.0 reveal true retainCurrent true
    7339 
    7340 28 hydrogen bonds found 
    7341 
    7342 > show #!100.1 models
    7343 
    7344 > hide #!100.1 models
    7345 
    7346 > show #!100.1 models
    7347 
    7348 > hide #!100.1 models
    7349 
    7350 > show #100.1.1 models
    7351 
    7352 > hide #100.1.1 models
    7353 
    7354 > show #100.1.1 models
    7355 
    7356 > hide #100.1.1 models
    7357 
    7358 > show #100.1.2 models
    7359 
    7360 > ui tool show H-Bonds
    7361 
    7362 > hbonds sel color #8efa00 dashes 6 restrict cross interModel false distSlop
    7363 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    7364 
    7365 8 hydrogen bonds found 
    7366 
    7367 > hide #100.1.2 models
    7368 
    7369 Drag select of 4 atoms, 4 residues, 2 bonds 
    7370 
    7371 > hide #!100 models
    7372 
    7373 > show #!7 models
    7374 
    7375 > hide #!7 models
    7376 
    7377 > toolshed show
    7378 
    7379 > select #55/A:149
    7380 
    7381 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7382 
    7383 > show #!3 models
    7384 
    7385 > hide #!55 models
    7386 
    7387 > hide #!100.1 models
    7388 
    7389 > show #!6 models
    7390 
    7391 > hide #!3 models
    7392 
    7393 > select #6/A:149@CG
    7394 
    7395 1 atom, 1 residue, 1 model selected 
    7396 
    7397 > select up
    7398 
    7399 8 atoms, 7 bonds, 1 residue, 2 models selected 
    7400 
    7401 > select clear
    7402 
    7403 > select #6/B:311
    7404 
    7405 7 atoms, 7 bonds, 1 residue, 1 model selected 
    7406 
    7407 > select up
    7408 
    7409 69 atoms, 71 bonds, 9 residues, 2 models selected 
    7410 
    7411 > show sel atoms
    7412 
    7413 > show #!7 models
    7414 
    7415 > hide #!6 models
    7416 
    7417 > show #!6 models
    7418 
    7419 > hide #!6 models
    7420 
    7421 > show #!6 models
    7422 
    7423 > hide #!7 models
    7424 
    7425 > show #!3 models
    7426 
    7427 > hide #!6 models
    7428 
    7429 > select add #6
    7430 
    7431 2375 atoms, 2421 bonds, 316 residues, 2 models selected 
    7432 
    7433 > select subtract #6
    7434 
    7435 2 models selected 
    7436 
    7437 > select #3/A:149@CB
    7438 
    7439 1 atom, 1 residue, 1 model selected 
    7440 
    7441 > select up
    7442 
    7443 8 atoms, 7 bonds, 1 residue, 2 models selected 
    7444 
    7445 > ui tool show H-Bonds
    7446 
    7447 > hbonds sel color #8efa00 dashes 6 interModel false distSlop 0.8 angleSlop
    7448 > 60.0 reveal true retainCurrent true
    7449 
    7450 6 hydrogen bonds found 
    7451 
    7452 > show #3.3 models
    7453 
    7454 > hide #3.3 models
    7455 
    7456 > show #!9 models
    7457 
    7458 > hide #!3 models
    7459 
    7460 > show #!3 models
    7461 
    7462 > hide #!3 models
    7463 
    7464 > select #9/B:23
    7465 
    7466 12 atoms, 12 bonds, 1 residue, 1 model selected 
    7467 
    7468 > select add #9/B:22
    7469 
    7470 19 atoms, 19 bonds, 2 residues, 1 model selected 
    7471 
    7472 > select add #9/B:21
    7473 
    7474 31 atoms, 31 bonds, 1 pseudobond, 3 residues, 2 models selected 
    7475 
    7476 > select add #9/B:20
    7477 
    7478 39 atoms, 38 bonds, 1 pseudobond, 4 residues, 2 models selected 
    7479 
    7480 > show sel cartoons
    7481 
    7482 > show sel atoms
    7483 
    7484 > show #!3 models
    7485 
    7486 > show #3.2 models
    7487 
    7488 > hide #3.2 models
    7489 
    7490 > show #3.3 models
    7491 
    7492 > hide #3.3 models
    7493 
    7494 > show #3.3 models
    7495 
    7496 > hide #3.3 models
    7497 
    7498 > select clear
    7499 
    7500 > hide #!9 models
    7501 
    7502 > show #3.3 models
    7503 
    7504 > color #3.3 #ff40ffff models
    7505 
    7506 > color #3.3 #fffb00ff models
    7507 
    7508 > select clear
    7509 
    7510 > show #!8 models
    7511 
    7512 > hide #!3 models
    7513 
    7514 > hide #!8 models
    7515 
    7516 > show #!9 models
    7517 
    7518 > select #9/A:149
    7519 
    7520 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7521 
    7522 > select up
    7523 
    7524 35 atoms, 35 bonds, 5 residues, 1 model selected 
    7525 
    7526 > select up
    7527 
    7528 1576 atoms, 1605 bonds, 214 residues, 1 model selected 
    7529 
    7530 > select down
    7531 
    7532 35 atoms, 35 bonds, 5 residues, 1 model selected 
    7533 
    7534 > select add #9/A:154
    7535 
    7536 41 atoms, 40 bonds, 6 residues, 1 model selected 
    7537 
    7538 > select add #9/A:148
    7539 
    7540 53 atoms, 52 bonds, 7 residues, 1 model selected 
    7541 
    7542 > ui tool show H-Bonds
    7543 
    7544 > hbonds sel color #8efa00 dashes 6 interModel false distSlop 0.8 angleSlop
    7545 > 60.0 reveal true retainCurrent true
    7546 
    7547 12 hydrogen bonds found 
    7548 
    7549 > hide #3.3 models
    7550 
    7551 > show #3.3 models
    7552 
    7553 > hide #!9 models
    7554 
    7555 > show #!9 models
    7556 
    7557 > hide #!9 models
    7558 
    7559 > show #!9 models
    7560 
    7561 > hide #3.3 models
    7562 
    7563 > hide #!3 models
    7564 
    7565 > show #3.3 models
    7566 
    7567 > hide #!9 models
    7568 
    7569 > hide #3.3 models
    7570 
    7571 > select add #9
    7572 
    7573 1816 atoms, 1851 bonds, 35 pseudobonds, 244 residues, 2 models selected 
    7574 
    7575 > show #10 models
    7576 
    7577 > hide #!3 models
    7578 
    7579 > select #10/A:148
    7580 
    7581 12 atoms, 12 bonds, 1 residue, 1 model selected 
    7582 
    7583 > select up
    7584 
    7585 290 atoms, 296 bonds, 38 residues, 1 model selected 
    7586 
    7587 > select down
    7588 
    7589 12 atoms, 12 bonds, 1 residue, 1 model selected 
    7590 
    7591 > select up
    7592 
    7593 290 atoms, 296 bonds, 38 residues, 1 model selected 
    7594 
    7595 > select down
    7596 
    7597 12 atoms, 12 bonds, 1 residue, 1 model selected 
    7598 
    7599 > select add #10/A:149
    7600 
    7601 20 atoms, 19 bonds, 2 residues, 1 model selected 
    7602 
    7603 > select add #10/A:150
    7604 
    7605 27 atoms, 26 bonds, 3 residues, 1 model selected 
    7606 
    7607 > select up
    7608 
    7609 325 atoms, 332 bonds, 43 residues, 1 model selected 
    7610 
    7611 > select down
    7612 
    7613 27 atoms, 26 bonds, 3 residues, 1 model selected 
    7614 
    7615 > select add #10/A:151
    7616 
    7617 35 atoms, 33 bonds, 4 residues, 1 model selected 
    7618 
    7619 > select add #10/A:152
    7620 
    7621 42 atoms, 39 bonds, 5 residues, 1 model selected 
    7622 
    7623 > select add #10/A:153
    7624 
    7625 47 atoms, 43 bonds, 6 residues, 1 model selected 
    7626 
    7627 > select add #10/A:154
    7628 
    7629 53 atoms, 48 bonds, 7 residues, 1 model selected 
    7630 
    7631 > hbonds sel color #8efa00 dashes 6 interModel false distSlop 0.8 angleSlop
    7632 > 60.0 reveal true retainCurrent true
    7633 
    7634 12 hydrogen bonds found 
    7635 
    7636 > hide #!10 models
    7637 
    7638 > select add #10
    7639 
    7640 1816 atoms, 1851 bonds, 12 pseudobonds, 244 residues, 2 models selected 
    7641 
    7642 > show #11 models
    7643 
    7644 > select add #11
    7645 
    7646 3632 atoms, 3702 bonds, 12 pseudobonds, 488 residues, 3 models selected 
    7647 
    7648 > select subtract #11
    7649 
    7650 1816 atoms, 1851 bonds, 12 pseudobonds, 244 residues, 2 models selected 
    7651 
    7652 > select #11/A:149
    7653 
    7654 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7655 
    7656 > select up
    7657 
    7658 35 atoms, 35 bonds, 5 residues, 1 model selected 
    7659 
    7660 > select add #11/A:148
    7661 
    7662 47 atoms, 47 bonds, 6 residues, 1 model selected 
    7663 
    7664 > select add #11/A:154
    7665 
    7666 53 atoms, 52 bonds, 7 residues, 1 model selected 
    7667 
    7668 > hbonds sel color #8efa00 dashes 6 interModel false distSlop 0.8 angleSlop
    7669 > 60.0 reveal true retainCurrent true
    7670 
    7671 12 hydrogen bonds found 
    7672 
    7673 > show #!10 models
    7674 
    7675 > show #!9 models
    7676 
    7677 > hide #!9 models
    7678 
    7679 > hide #!10 models
    7680 
    7681 > hide #!11 models
    7682 
    7683 > show #12 models
    7684 
    7685 > select add #12/A:150
    7686 
    7687 60 atoms, 59 bonds, 8 residues, 2 models selected 
    7688 
    7689 > select up
    7690 
    7691 379 atoms, 386 bonds, 51 residues, 2 models selected 
    7692 
    7693 > select add #12/A:148
    7694 
    7695 391 atoms, 398 bonds, 52 residues, 2 models selected 
    7696 
    7697 > select add #12/A:154
    7698 
    7699 397 atoms, 403 bonds, 53 residues, 2 models selected 
    7700 
    7701 > hbonds sel color #8efa00 dashes 6 interModel false distSlop 0.8 angleSlop
    7702 > 60.0 reveal true retainCurrent true
    7703 
    7704 107 hydrogen bonds found 
    7705 
    7706 > hide #!12 models
    7707 
    7708 > show #13 models
    7709 
    7710 > select #13/A:150
    7711 
    7712 7 atoms, 7 bonds, 1 residue, 1 model selected 
    7713 
    7714 > select up
    7715 
    7716 35 atoms, 35 bonds, 5 residues, 1 model selected 
    7717 
    7718 > select add #13/A:148
    7719 
    7720 47 atoms, 47 bonds, 6 residues, 1 model selected 
    7721 
    7722 > select add #13/A:154
    7723 
    7724 53 atoms, 52 bonds, 7 residues, 1 model selected 
    7725 
    7726 > hbonds sel color #8efa00 dashes 6 interModel false distSlop 0.8 angleSlop
    7727 > 60.0 reveal true retainCurrent true
    7728 
    7729 12 hydrogen bonds found 
    7730 
    7731 > hide #!13 models
    7732 
    7733 > select add #13
    7734 
    7735 1816 atoms, 1851 bonds, 12 pseudobonds, 244 residues, 2 models selected 
    7736 
    7737 > select subtract #13
    7738 
    7739 Nothing selected 
    7740 
    7741 > show #!14 models
    7742 
    7743 > show #14.1 models
    7744 
    7745 > show #!14.2 models
    7746 
    7747 > select #14.1/A:226
    7748 
    7749 7 atoms, 6 bonds, 1 residue, 1 model selected 
    7750 
    7751 > select up
    7752 
    7753 45 atoms, 45 bonds, 7 residues, 1 model selected 
    7754 
    7755 > hbonds sel color #8efa00 dashes 6 interModel false distSlop 0.8 angleSlop
    7756 > 60.0 reveal true retainCurrent true
    7757 
    7758 10 hydrogen bonds found 
    7759 
    7760 > select up
    7761 
    7762 2 atoms, 1 bond, 1 residue, 1 model selected 
    7763 
    7764 > select up
    7765 
    7766 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7767 
    7768 > select up
    7769 
    7770 45 atoms, 45 bonds, 7 residues, 1 model selected 
    7771 
    7772 > select down
    7773 
    7774 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7775 
    7776 > select up
    7777 
    7778 45 atoms, 45 bonds, 7 residues, 1 model selected 
    7779 
    7780 > select add #14.2/B:319
    7781 
    7782 57 atoms, 57 bonds, 8 residues, 2 models selected 
    7783 
    7784 > select up
    7785 
    7786 72 atoms, 73 bonds, 10 residues, 2 models selected 
    7787 
    7788 > select up
    7789 
    7790 1775 atoms, 1809 bonds, 239 residues, 2 models selected 
    7791 
    7792 > select down
    7793 
    7794 72 atoms, 73 bonds, 10 residues, 2 models selected 
    7795 
    7796 > select add #14.2/B:321
    7797 
    7798 84 atoms, 85 bonds, 11 residues, 2 models selected 
    7799 
    7800 > select add #14.2/B:322
    7801 
    7802 90 atoms, 90 bonds, 12 residues, 2 models selected 
    7803 
    7804 > select add #14.2/B:323
    7805 
    7806 98 atoms, 97 bonds, 13 residues, 2 models selected 
    7807 
    7808 > select add #14.2/B:324
    7809 
    7810 106 atoms, 104 bonds, 14 residues, 2 models selected 
    7811 
    7812 > hbonds sel color #8efa00 dashes 6 restrict cross distSlop 0.8 angleSlop 60.0
    7813 > reveal true retainCurrent true
    7814 
    7815 1264 hydrogen bonds found 
    7816 
    7817 > hbonds sel color #8efa00 dashes 6 restrict both distSlop 0.8 angleSlop 60.0
    7818 > reveal true retainCurrent true
    7819 
    7820 9 hydrogen bonds found 
    7821 
    7822 > hide #!14.2 models
    7823 
    7824 > show #!14.2 models
    7825 
    7826 > hide #!14 models
    7827 
    7828 > hide #!14.1 models
    7829 
    7830 > hide #!14.2 models
    7831 
    7832 > show #!3 models
    7833 
    7834 > select #3/B:308
    7835 
    7836 4 atoms, 3 bonds, 1 residue, 1 model selected 
    7837 
    7838 > select #3/B:308-318
    7839 
    7840 94 atoms, 97 bonds, 11 residues, 1 model selected 
    7841 
    7842 > show #!7 models
    7843 
    7844 > hide #!3 models
    7845 
    7846 > show #!3 models
    7847 
    7848 > hide #!3 models
    7849 
    7850 > show #!3 models
    7851 
    7852 > hide #!3 models
    7853 
    7854 > show #!3 models
    7855 
    7856 > hide #!3 models
    7857 
    7858 > show #!3 models
    7859 
    7860 > hide #!3 models
    7861 
    7862 > show #!3 models
    7863 
    7864 > hide #!3 models
    7865 
    7866 > show #!3 models
    7867 
    7868 > hide #!3 models
    7869 
    7870 > show #!3 models
    7871 
    7872 > hide #!3 models
    7873 
    7874 > show #!3 models
    7875 
    7876 > hide #!3 models
    7877 
    7878 > show #!3 models
    7879 
    7880 > hide #!3 models
    7881 
    7882 > show #!3 models
    7883 
    7884 > hide #!3 models
    7885 
    7886 > show #!3 models
    7887 
    7888 > hide #!3 models
    7889 
    7890 > show #!3 models
    7891 
    7892 > hide #!3 models
    7893 
    7894 > show #!3 models
    7895 
    7896 > hide #!3 models
    7897 
    7898 > show #!3 models
    7899 
    7900 > hide #!3 models
    7901 
    7902 > show #!3 models
    7903 
    7904 > hide #!3 models
    7905 
    7906 > show #!3 models
    7907 
    7908 > hide #!3 models
    7909 
    7910 > show #!28 models
    7911 
    7912 > hide #!28 models
    7913 
    7914 > show #!40 models
    7915 
    7916 > hide #!7 models
    7917 
    7918 > show #!7 models
    7919 
    7920 > hide #!7 models
    7921 
    7922 > show #!7 models
    7923 
    7924 > hide #!7 models
    7925 
    7926 > hide #!40 models
    7927 
    7928 > show #!7 models
    7929 
    7930 > select #7/B:196,197,198,211,221,300
    7931 
    7932 43 atoms, 39 bonds, 6 residues, 1 model selected 
    7933 
    7934 > show sel atoms
    7935 
    7936 > style sel ball
    7937 
    7938 Changed 43 atom styles 
    7939 
    7940 > hide sel atoms
    7941 
    7942 > select #7/A:196,197,198,211,221,300
    7943 
    7944 Nothing selected 
    7945 
    7946 > select #3/A:6-26,68-69,74-102,111-149,161-184
    7947 
    7948 809 atoms, 817 bonds, 24 pseudobonds, 115 residues, 3 models selected 
    7949 
    7950 > select #7/A:196,197,198,211,221,300
    7951 
    7952 Nothing selected 
    7953 
    7954 > hide #!7 models
    7955 
    7956 > show #!7 models
    7957 
    7958 > select #7/A:196
    7959 
    7960 Nothing selected 
    7961 
    7962 > hide #!7 models
    7963 
    7964 > show #!7 models
    7965 
    7966 > select clear
    7967 
    7968 > show #3.1 models
    7969 
    7970 > hide #3.1 models
    7971 
    7972 > hide #!7 models
    7973 
    7974 > select #3/A:6-26,68-69,74-102,111-149,161-184
    7975 
    7976 809 atoms, 817 bonds, 24 pseudobonds, 115 residues, 3 models selected 
    7977 
    7978 > select clear
    7979 
    7980 > show #1 models
    7981 
    7982 > hide #!3 models
    7983 
    7984 > show #2 models
    7985 
    7986 > hide #1 models
    7987 
    7988 > ui tool show "Show Sequence Viewer"
    7989 
    7990 > sequence chain #2/A
    7991 
    7992 Alignment identifier is 2/A 
    7993 
    7994 > ui tool show "Show Sequence Viewer"
    7995 
    7996 > sequence chain #1/A
    7997 
    7998 Alignment identifier is 1/A 
    7999 
    8000 > show #!6 models
    8001 
    8002 > hide #!6 models
    8003 
    8004 > show #!7 models
    8005 
    8006 > hide #!7 models
    8007 
    8008 > show #!9 models
    8009 
    8010 > ui tool show "Show Sequence Viewer"
    8011 
    8012 > sequence chain #15/A
    8013 
    8014 Alignment identifier is 15/A 
    8015 
    8016 > select #15/A:196,197,198,211,221,300
    8017 
    8018 35 atoms, 34 bonds, 4 residues, 1 model selected 
    8019 
    8020 > show #2#!9 atoms
    8021 
    8022 > hide #2#!9 atoms
    8023 
    8024 > select add #15
    8025 
    8026 1720 atoms, 1754 bonds, 8 pseudobonds, 231 residues, 2 models selected 
    8027 
    8028 > select subtract #15
    8029 
    8030 Nothing selected 
    8031 
    8032 > select add #15
    8033 
    8034 1720 atoms, 1754 bonds, 8 pseudobonds, 231 residues, 2 models selected 
    8035 
    8036 > select #15/A:196,197,198,211,221,300
    8037 
    8038 35 atoms, 34 bonds, 4 residues, 1 model selected 
    8039 
    8040 > show #2#!9 cartoons
    8041 
    8042 > hide #2#!9 cartoons
    8043 
    8044 > show #2#!9 cartoons
    8045 
    8046 > show #2#!9 atoms
    8047 
    8048 > hide #2#!9 atoms
    8049 
    8050 > select #15/A:196,197,198,211,221,300
    8051 
    8052 35 atoms, 34 bonds, 4 residues, 1 model selected 
    8053 
    8054 > hide #!9 models
    8055 
    8056 > hide #2 models
    8057 
    8058 > show #!15 models
    8059 
    8060 > select #15/A:196,197,198,211,221,300
    8061 
    8062 35 atoms, 34 bonds, 4 residues, 1 model selected 
    8063 
    8064 > show sel atoms
    8065 
    8066 > hide #!15 models
    8067 
    8068 > show #!3 models
    8069 
    8070 > select #3/B:314
    8071 
    8072 8 atoms, 7 bonds, 1 residue, 1 model selected 
    8073 
    8074 > select #3/B:314-316
    8075 
    8076 27 atoms, 27 bonds, 3 residues, 1 model selected 
    8077 
    8078 > show sel atoms
    8079 
    8080 > select #3/B:319
    8081 
    8082 11 atoms, 11 bonds, 1 residue, 1 model selected 
    8083 
    8084 > select #3/B:319
    8085 
    8086 11 atoms, 11 bonds, 1 residue, 1 model selected 
    8087 
    8088 > select #3/B:312
    8089 
    8090 12 atoms, 12 bonds, 1 residue, 1 model selected 
    8091 
    8092 > hide #!3 models
    8093 
    8094 > show #3.2 models
    8095 
    8096 > show #3.1 models
    8097 
    8098 > hide #3.2 models
    8099 
    8100 > hide #!3 models
    8101 
    8102 > show #!55 models
    8103 
    8104 > hide #!55 models
    8105 
    8106 > show #!30 models
    8107 
    8108 > hide #!30 models
    8109 
    8110 > show #26 models
    8111 
    8112 > hide #26 models
    8113 
    8114 > show #!15 models
    8115 
    8116 > show #!16 models
    8117 
    8118 > show #!17 models
    8119 
    8120 > show #18 models
    8121 
    8122 > hide #!15 models
    8123 
    8124 > hide #!16 models
    8125 
    8126 > hide #!17 models
    8127 
    8128 > show #!30 models
    8129 
    8130 > hide #18 models
    8131 
    8132 > show #!31 models
    8133 
    8134 > hide #!30 models
    8135 
    8136 > show #!32 models
    8137 
    8138 > hide #!31 models
    8139 
    8140 > show #!33 models
    8141 
    8142 > hide #!32 models
    8143 
    8144 > show #!34 models
    8145 
    8146 > hide #!33 models
    8147 
    8148 > show #!7 models
    8149 
    8150 > hide #!34 models
    8151 
    8152 > select #3/A:40
    8153 
    8154 8 atoms, 7 bonds, 1 residue, 1 model selected 
    8155 
    8156 > select #3/A:40-42
    8157 
    8158 22 atoms, 21 bonds, 3 residues, 1 model selected 
    8159 
    8160 > show #!15 models
    8161 
    8162 > hide #!15 models
    8163 
    8164 > show #!3 models
    8165 
    8166 > hide #3.1 models
    8167 
    8168 > ui tool show H-Bonds
    8169 
    8170 > hbonds sel color #8efa00 dashes 6 interModel false distSlop 0.8 angleSlop
    8171 > 60.0 reveal true retainCurrent true
    8172 
    8173 6 hydrogen bonds found 
    8174 
    8175 > color sel byhetero
    8176 
    8177 > hbonds sel color #8efa00 dashes 6 interModel false distSlop 0.8 angleSlop
    8178 > 60.0 reveal true retainCurrent true
    8179 
    8180 6 hydrogen bonds found 
    8181 
    8182 > show #3.3 models
    8183 
    8184 > hide #!7 models
    8185 
    8186 > show #!7 models
    8187 
    8188 > hide #!3 models
    8189 
    8190 > show #!3 models
    8191 
    8192 > hide #!3 models
    8193 
    8194 > show #!3 models
    8195 
    8196 > hide #!3 models
    8197 
    8198 > show #!3 models
    8199 
    8200 > hide #!3 models
    8201 
    8202 > show #!3 models
    8203 
    8204 > hide #!3 models
    8205 
    8206 > show #!3 models
    8207 
    8208 > select #3/A:40-42
    8209 
    8210 22 atoms, 21 bonds, 2 pseudobonds, 3 residues, 2 models selected 
    8211 
    8212 > select #3/A:40-42,55
    8213 
    8214 29 atoms, 27 bonds, 2 pseudobonds, 4 residues, 2 models selected 
    8215 
    8216 > select #3/A:40-42,55,65-66
    8217 
    8218 45 atoms, 42 bonds, 2 pseudobonds, 6 residues, 2 models selected 
    8219 
    8220 > hide #3.3 models
    8221 
    8222 > show #3.4 models
    8223 
    8224 > show #3.3 models
    8225 
    8226 > hide #3.4 models
    8227 
    8228 > hide #!7 models
    8229 
    8230 > hide #!3 models
    8231 
    8232 > show #!3 models
    8233 
    8234 > show #!6 models
    8235 
    8236 > hide #3.3 models
    8237 
    8238 > show #3.3 models
    8239 
    8240 > hide #!3 models
    8241 
    8242 > show #!7 models
    8243 
    8244 > hide #!6 models
    8245 
    8246 > hide #3.3 models
    8247 
    8248 > show #!3 models
    8249 
    8250 > hide #!3 models
    8251 
    8252 > show #!6 models
    8253 
    8254 > hide #!7 models
    8255 
    8256 > hide #!6 models
    8257 
    8258 > show #!7 models
    8259 
    8260 > hide #!7 models
    8261 
    8262 > show #!9 models
    8263 
    8264 > show #!10 models
    8265 
    8266 > show #!11 models
    8267 
    8268 > show #!12 models
    8269 
    8270 > show #!13 models
    8271 
    8272 > show #5 models
    8273 
    8274 > hide #5 models
    8275 
    8276 > show #!6 models
    8277 
    8278 > hide #!6 models
    8279 
    8280 > show #!6 models
    8281 
    8282 > hide #!6 models
    8283 
    8284 > show #!6 models
    8285 
    8286 > hide #!6 models
    8287 
    8288 > show #!6 models
    8289 
    8290 > hide #!6 models
    8291 
    8292 > show #!6 models
    8293 
    8294 > hide #!6 models
    8295 
    8296 > show #!6 models
    8297 
    8298 > hide #!6 models
    8299 
    8300 > show #!6 models
    8301 
    8302 > hide #!6 models
    8303 
    8304 > show #!6 models
    8305 
    8306 > hide #!6 models
    8307 
    8308 > hide #!9 models
    8309 
    8310 > hide #!10 models
    8311 
    8312 > show #!10 models
    8313 
    8314 > show #!9 models
    8315 
    8316 > show #!3 models
    8317 
    8318 > hide #!3 models
    8319 
    8320 > hide #!9 models
    8321 
    8322 > hide #!10 models
    8323 
    8324 > hide #!11 models
    8325 
    8326 > hide #!12 models
    8327 
    8328 > hide #!13 models
    8329 
    8330 > show #!15 models
    8331 
    8332 > show #!16 models
    8333 
    8334 > show #!17 models
    8335 
    8336 > show #18 models
    8337 
    8338 > show #!19 models
    8339 
    8340 > show #!7 models
    8341 
    8342 > hide #!7 models
    8343 
    8344 > show #!7 models
    8345 
    8346 > hide #!7 models
    8347 
    8348 > show #!7 models
    8349 
    8350 > hide #!19 models
    8351 
    8352 > hide #18 models
    8353 
    8354 > hide #!17 models
    8355 
    8356 > hide #!16 models
    8357 
    8358 > show #!16 models
    8359 
    8360 > hide #!16 models
    8361 
    8362 > hide #!15 models
    8363 
    8364 > show #!15 models
    8365 
    8366 > hide #!15 models
    8367 
    8368 > show #48 models
    8369 
    8370 > hide #48 models
    8371 
    8372 > show #48 models
    8373 
    8374 > show #49 models
    8375 
    8376 > hide #49 models
    8377 
    8378 > show #49 models
    8379 
    8380 > hide #!7 models
    8381 
    8382 > hide #48 models
    8383 
    8384 > hide #49 models
    8385 
    8386 > show #!55 models
    8387 
    8388 > hide #!55 models
    8389 
    8390 > show #!46 models
    8391 
    8392 > hide #!46 models
    8393 
    8394 > show #!55 models
    8395 
    8396 > show #56 models
    8397 
    8398 > show #57 models
    8399 
    8400 > show #58 models
    8401 
    8402 > show #59 models
    8403 
    8404 > hide #59 models
    8405 
    8406 > hide #58 models
    8407 
    8408 > hide #57 models
    8409 
    8410 > hide #56 models
    8411 
    8412 > show #3.1 models
    8413 
    8414 > show #3.2 models
    8415 
    8416 > hide #!3 models
    8417 
    8418 > hide #3.1 models
    8419 
    8420 > hide #3.2 models
    8421 
    8422 > show #!8 models
    8423 
    8424 > hide #!55 models
    8425 
    8426 > hide #!8 models
    8427 
    8428 > show #!14.1 models
    8429 
    8430 > show #!14.2 models
    8431 
    8432 > show #3.1 models
    8433 
    8434 > hide #3.1 models
    8435 
    8436 > show #!20 models
    8437 
    8438 > hide #!20 models
    8439 
    8440 > show #!20 models
    8441 
    8442 > hide #!20 models
    8443 
    8444 > show #!20 models
    8445 
    8446 > hide #!20 models
    8447 
    8448 > close #20
    8449 
    8450 > close #14
    8451 
    8452 > show #2 models
    8453 
    8454 > hide #!3 models
    8455 
    8456 > select #2/A:150
    8457 
    8458 7 atoms, 7 bonds, 1 residue, 1 model selected 
    8459 
    8460 > select up
    8461 
    8462 83 atoms, 83 bonds, 11 residues, 1 model selected 
    8463 
    8464 > show #!3 models
    8465 
    8466 > hide #!3 models
    8467 
    8468 > select #2/A:155
    8469 
    8470 4 atoms, 3 bonds, 1 residue, 1 model selected 
    8471 
    8472 > select add #2/A:154
    8473 
    8474 10 atoms, 8 bonds, 2 residues, 1 model selected 
    8475 
    8476 > select add #2/A:153
    8477 
    8478 15 atoms, 12 bonds, 3 residues, 1 model selected 
    8479 
    8480 > select add #2/A:152
    8481 
    8482 22 atoms, 18 bonds, 4 residues, 1 model selected 
    8483 
    8484 > select add #2/A:151
    8485 
    8486 30 atoms, 25 bonds, 5 residues, 1 model selected 
    8487 
    8488 > select add #2/A:150
    8489 
    8490 37 atoms, 32 bonds, 6 residues, 1 model selected 
    8491 
    8492 > select add #2/A:149
    8493 
    8494 45 atoms, 39 bonds, 7 residues, 1 model selected 
    8495 
    8496 > ui tool show H-Bonds
    8497 
    8498 > hbonds sel color #8efa00 dashes 6 restrict cross interModel false distSlop
    8499 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    8500 
    8501 7 hydrogen bonds found 
    8502 
    8503 > show #!7 models
    8504 
    8505 > hide #!7 models
    8506 
    8507 > show #!3 models
    8508 
    8509 > hide #!3 models
    8510 
    8511 > select #2/B:227
    8512 
    8513 11 atoms, 10 bonds, 1 residue, 1 model selected 
    8514 
    8515 > show sel atoms
    8516 
    8517 > ui tool show H-Bonds
    8518 
    8519 > hbonds sel color #8efa00 dashes 6 restrict cross interModel false distSlop
    8520 > 0.8 angleSlop 60.0 reveal true retainCurrent true
    8521 
    8522 3 hydrogen bonds found 
    8523 
    8524 > show #1 models
    8525 
    8526 > hide #1 models
    8527 
    8528 > select
    8529 > #3/B:204-209,222-228,237-243,250-255,259-266,271-277,286-290,295-302,312-318
    8530 
    8531 510 atoms, 512 bonds, 61 residues, 1 model selected 
    8532 
    8533 > show #!4 models
    8534 
    8535 > hide #!4 models
    8536 
    8537 > show #!6 models
    8538 
    8539 > hide #!6 models
    8540 
    8541 > show #!6 models
    8542 
    8543 > hide #!2 models
    8544 
    8545 > select #6/B:318
    8546 
    8547 9 atoms, 8 bonds, 1 residue, 1 model selected 
    8548 
    8549 > show sel atoms
    8550 
    8551 > show #3.2 models
    8552 
    8553 > hide #!6 models
    8554 
    8555 > hide #!3 models
    8556 
    8557 > show #!3 models
    8558 
    8559 > show #3.1 models
    8560 
    8561 > hide #3.2 models
    8562 
    8563 > select #3/A:147@CA
    8564 
    8565 1 atom, 1 residue, 1 model selected 
    8566 
    8567 > select up
    8568 
    8569 11 atoms, 11 bonds, 1 residue, 2 models selected 
    8570 
    8571 > select up
    8572 
    8573 294 atoms, 300 bonds, 39 residues, 2 models selected 
    8574 
    8575 > select up
    8576 
    8577 1318 atoms, 1342 bonds, 182 residues, 2 models selected 
    8578 
    8579 > coulombic sel
    8580 
    8581 The following residues are missing heavy (non-hydrogen) atoms, which may
    8582 result in inaccurate electrostatics: 
    8583 7kp4 #3/A LEU 6 
    8584 7kp4 #3/A GLN 7 
    8585 7kp4 #3/A LYS 103 
    8586 7kp4 #3/A GLU 109 
    8587 7kp4 #3/A LYS 114 
    8588 
    8589 Using Amber 20 recommended default charges and atom types for standard
    8590 residues 
    8591 Coulombic values for 7kp4_A SES surface #3.1: minimum, -11.16, mean -0.86,
    8592 maximum 7.56 
    8593 To also show corresponding color key, enter the above coulombic command and
    8594 add key true 
    8595 
    8596 > coulombic sel
    8597 
    8598 Coulombic values for 7kp4_A SES surface #3.1: minimum, -11.16, mean -0.86,
    8599 maximum 7.56 
    8600 To also show corresponding color key, enter the above coulombic command and
    8601 add key true 
    8602 
    8603 > hide #3.1 models
    8604 
    8605 > show #3.1 models
    8606 
    8607 > hide #3.1 models
    8608 
    8609 > show #3.1 models
    8610 
    8611 > hide #3.1 models
    8612 
    8613 > show #3.1 models
    8614 
    8615 > open /Users/adaina/Downloads/muscle-I20250623-145406-0980-39275076-p1m.fa
    8616 
    8617 Summary of feedback from opening
    8618 /Users/adaina/Downloads/muscle-I20250623-145406-0980-39275076-p1m.fa 
    8619 --- 
    8620 notes | Alignment identifier is muscle-I20250623-145406-0980-39275076-p1m.fa 
    8621 Associated 8u4v chain A to sp|O14493|CLD4_HUMAN with 0 mismatches 
    8622 Associated 9cmh chain A to sp|O14493|CLD4_HUMAN with 0 mismatches 
    8623 Associated 7kp4 chain A to sp|O14493|CLD4_HUMAN with 0 mismatches 
    8624 Associated Cpe30 chain A to sp|O14493|CLD4_HUMAN with 0 mismatches 
    8625 Associated Cpe17 chain A to sp|O14493|CLD4_HUMAN with 0 mismatches 
    8626 51 messages similar to the above omitted 
    8627 Showing conservation header ("seq_conservation" residue attribute) for
    8628 alignment muscle-I20250623-145406-0980-39275076-p1m.fa 
    8629  
    8630 Opened 17 sequences from muscle-I20250623-145406-0980-39275076-p1m.fa 
    8631 
    8632 > select clear
    8633 
    8634 > sequence identity muscle-I20250623-145406-0980-39275076-p1m.fa
    8635 
    8636 sp|P57739|CLD2_HUMAN vs. sp|O88552|CLD2_MOUSE: 91.30% identity 
    8637 sp|P57739|CLD2_HUMAN vs. sp|Q9Z0S3|CLD14_MOUSE: 46.52% identity 
    8638 sp|P57739|CLD2_HUMAN vs. sp|Q9Z260|CLD8_MOUSE: 32.89% identity 
    8639 sp|P57739|CLD2_HUMAN vs. sp|Q9Z261|CLD7_MOUSE: 38.39% identity 
    8640 sp|P57739|CLD2_HUMAN vs. sp|O95471|CLD7_HUMAN: 37.44% identity 
    8641 sp|P57739|CLD2_HUMAN vs. sp|O95832|CLD1_HUMAN: 37.44% identity 
    8642 sp|P57739|CLD2_HUMAN vs. sp|O88551|CLD1_MOUSE: 37.44% identity 
    8643 sp|P57739|CLD2_HUMAN vs. sp|O00501|CLD5_HUMAN: 34.86% identity 
    8644 sp|P57739|CLD2_HUMAN vs. sp|O54942|CLD5_MOUSE: 34.40% identity 
    8645 sp|P57739|CLD2_HUMAN vs. sp|Q9Z262|CLD6_MOUSE: 39.73% identity 
    8646 sp|P57739|CLD2_HUMAN vs. sp|O95484|CLD9_HUMAN: 38.71% identity 
    8647 sp|P57739|CLD2_HUMAN vs. sp|O15551|CLD3_HUMAN: 37.73% identity 
    8648 sp|P57739|CLD2_HUMAN vs. sp|Q9Z0G9|CLD3_MOUSE: 38.36% identity 
    8649 sp|P57739|CLD2_HUMAN vs. sp|O35054|CLD4_MOUSE: 40.00% identity 
    8650 sp|P57739|CLD2_HUMAN vs. sp|O14493|CLD4_HUMAN: 39.23% identity 
    8651 sp|P57739|CLD2_HUMAN vs. tr|G7P183|G7P183_MACFA: 36.15% identity 
    8652 sp|O88552|CLD2_MOUSE vs. sp|Q9Z0S3|CLD14_MOUSE: 46.09% identity 
    8653 sp|O88552|CLD2_MOUSE vs. sp|Q9Z260|CLD8_MOUSE: 33.33% identity 
    8654 sp|O88552|CLD2_MOUSE vs. sp|Q9Z261|CLD7_MOUSE: 37.91% identity 
    8655 sp|O88552|CLD2_MOUSE vs. sp|O95471|CLD7_HUMAN: 36.97% identity 
    8656 sp|O88552|CLD2_MOUSE vs. sp|O95832|CLD1_HUMAN: 37.44% identity 
    8657 sp|O88552|CLD2_MOUSE vs. sp|O88551|CLD1_MOUSE: 36.49% identity 
    8658 sp|O88552|CLD2_MOUSE vs. sp|O00501|CLD5_HUMAN: 34.40% identity 
    8659 sp|O88552|CLD2_MOUSE vs. sp|O54942|CLD5_MOUSE: 33.03% identity 
    8660 sp|O88552|CLD2_MOUSE vs. sp|Q9Z262|CLD6_MOUSE: 37.90% identity 
    8661 sp|O88552|CLD2_MOUSE vs. sp|O95484|CLD9_HUMAN: 38.71% identity 
    8662 sp|O88552|CLD2_MOUSE vs. sp|O15551|CLD3_HUMAN: 39.09% identity 
    8663 sp|O88552|CLD2_MOUSE vs. sp|Q9Z0G9|CLD3_MOUSE: 39.73% identity 
    8664 sp|O88552|CLD2_MOUSE vs. sp|O35054|CLD4_MOUSE: 40.95% identity 
    8665 sp|O88552|CLD2_MOUSE vs. sp|O14493|CLD4_HUMAN: 40.67% identity 
    8666 sp|O88552|CLD2_MOUSE vs. tr|G7P183|G7P183_MACFA: 38.46% identity 
    8667 sp|Q9Z0S3|CLD14_MOUSE vs. sp|Q9Z260|CLD8_MOUSE: 35.56% identity 
    8668 sp|Q9Z0S3|CLD14_MOUSE vs. sp|Q9Z261|CLD7_MOUSE: 45.50% identity 
    8669 sp|Q9Z0S3|CLD14_MOUSE vs. sp|O95471|CLD7_HUMAN: 43.60% identity 
    8670 sp|Q9Z0S3|CLD14_MOUSE vs. sp|O95832|CLD1_HUMAN: 46.92% identity 
    8671 sp|Q9Z0S3|CLD14_MOUSE vs. sp|O88551|CLD1_MOUSE: 45.02% identity 
    8672 sp|Q9Z0S3|CLD14_MOUSE vs. sp|O00501|CLD5_HUMAN: 41.28% identity 
    8673 sp|Q9Z0S3|CLD14_MOUSE vs. sp|O54942|CLD5_MOUSE: 40.83% identity 
    8674 sp|Q9Z0S3|CLD14_MOUSE vs. sp|Q9Z262|CLD6_MOUSE: 40.18% identity 
    8675 sp|Q9Z0S3|CLD14_MOUSE vs. sp|O95484|CLD9_HUMAN: 43.78% identity 
    8676 sp|Q9Z0S3|CLD14_MOUSE vs. sp|O15551|CLD3_HUMAN: 42.73% identity 
    8677 sp|Q9Z0S3|CLD14_MOUSE vs. sp|Q9Z0G9|CLD3_MOUSE: 43.38% identity 
    8678 sp|Q9Z0S3|CLD14_MOUSE vs. sp|O35054|CLD4_MOUSE: 46.67% identity 
    8679 sp|Q9Z0S3|CLD14_MOUSE vs. sp|O14493|CLD4_HUMAN: 45.93% identity 
    8680 sp|Q9Z0S3|CLD14_MOUSE vs. tr|G7P183|G7P183_MACFA: 43.85% identity 
    8681 sp|Q9Z260|CLD8_MOUSE vs. sp|Q9Z261|CLD7_MOUSE: 42.18% identity 
    8682 sp|Q9Z260|CLD8_MOUSE vs. sp|O95471|CLD7_HUMAN: 44.08% identity 
    8683 sp|Q9Z260|CLD8_MOUSE vs. sp|O95832|CLD1_HUMAN: 40.28% identity 
    8684 sp|Q9Z260|CLD8_MOUSE vs. sp|O88551|CLD1_MOUSE: 38.39% identity 
    8685 sp|Q9Z260|CLD8_MOUSE vs. sp|O00501|CLD5_HUMAN: 42.20% identity 
    8686 sp|Q9Z260|CLD8_MOUSE vs. sp|O54942|CLD5_MOUSE: 41.74% identity 
    8687 sp|Q9Z260|CLD8_MOUSE vs. sp|Q9Z262|CLD6_MOUSE: 43.38% identity 
    8688 sp|Q9Z260|CLD8_MOUSE vs. sp|O95484|CLD9_HUMAN: 46.54% identity 
    8689 sp|Q9Z260|CLD8_MOUSE vs. sp|O15551|CLD3_HUMAN: 44.55% identity 
    8690 sp|Q9Z260|CLD8_MOUSE vs. sp|Q9Z0G9|CLD3_MOUSE: 42.01% identity 
    8691 sp|Q9Z260|CLD8_MOUSE vs. sp|O35054|CLD4_MOUSE: 44.29% identity 
    8692 sp|Q9Z260|CLD8_MOUSE vs. sp|O14493|CLD4_HUMAN: 44.50% identity 
    8693 sp|Q9Z260|CLD8_MOUSE vs. tr|G7P183|G7P183_MACFA: 40.00% identity 
    8694 sp|Q9Z261|CLD7_MOUSE vs. sp|O95471|CLD7_HUMAN: 91.94% identity 
    8695 sp|Q9Z261|CLD7_MOUSE vs. sp|O95832|CLD1_HUMAN: 59.72% identity 
    8696 sp|Q9Z261|CLD7_MOUSE vs. sp|O88551|CLD1_MOUSE: 59.72% identity 
    8697 sp|Q9Z261|CLD7_MOUSE vs. sp|O00501|CLD5_HUMAN: 44.55% identity 
    8698 sp|Q9Z261|CLD7_MOUSE vs. sp|O54942|CLD5_MOUSE: 44.08% identity 
    8699 sp|Q9Z261|CLD7_MOUSE vs. sp|Q9Z262|CLD6_MOUSE: 44.08% identity 
    8700 sp|Q9Z261|CLD7_MOUSE vs. sp|O95484|CLD9_HUMAN: 45.50% identity 
    8701 sp|Q9Z261|CLD7_MOUSE vs. sp|O15551|CLD3_HUMAN: 47.87% identity 
    8702 sp|Q9Z261|CLD7_MOUSE vs. sp|Q9Z0G9|CLD3_MOUSE: 48.34% identity 
    8703 sp|Q9Z261|CLD7_MOUSE vs. sp|O35054|CLD4_MOUSE: 50.48% identity 
    8704 sp|Q9Z261|CLD7_MOUSE vs. sp|O14493|CLD4_HUMAN: 45.45% identity 
    8705 sp|Q9Z261|CLD7_MOUSE vs. tr|G7P183|G7P183_MACFA: 41.54% identity 
    8706 sp|O95471|CLD7_HUMAN vs. sp|O95832|CLD1_HUMAN: 59.72% identity 
    8707 sp|O95471|CLD7_HUMAN vs. sp|O88551|CLD1_MOUSE: 59.24% identity 
    8708 sp|O95471|CLD7_HUMAN vs. sp|O00501|CLD5_HUMAN: 44.55% identity 
    8709 sp|O95471|CLD7_HUMAN vs. sp|O54942|CLD5_MOUSE: 45.50% identity 
    8710 sp|O95471|CLD7_HUMAN vs. sp|Q9Z262|CLD6_MOUSE: 43.60% identity 
    8711 sp|O95471|CLD7_HUMAN vs. sp|O95484|CLD9_HUMAN: 44.08% identity 
    8712 sp|O95471|CLD7_HUMAN vs. sp|O15551|CLD3_HUMAN: 45.97% identity 
    8713 sp|O95471|CLD7_HUMAN vs. sp|Q9Z0G9|CLD3_MOUSE: 46.92% identity 
    8714 sp|O95471|CLD7_HUMAN vs. sp|O35054|CLD4_MOUSE: 47.62% identity 
    8715 sp|O95471|CLD7_HUMAN vs. sp|O14493|CLD4_HUMAN: 43.54% identity 
    8716 sp|O95471|CLD7_HUMAN vs. tr|G7P183|G7P183_MACFA: 38.46% identity 
    8717 sp|O95832|CLD1_HUMAN vs. sp|O88551|CLD1_MOUSE: 88.15% identity 
    8718 sp|O95832|CLD1_HUMAN vs. sp|O00501|CLD5_HUMAN: 45.50% identity 
    8719 sp|O95832|CLD1_HUMAN vs. sp|O54942|CLD5_MOUSE: 45.02% identity 
    8720 sp|O95832|CLD1_HUMAN vs. sp|Q9Z262|CLD6_MOUSE: 47.39% identity 
    8721 sp|O95832|CLD1_HUMAN vs. sp|O95484|CLD9_HUMAN: 48.34% identity 
    8722 sp|O95832|CLD1_HUMAN vs. sp|O15551|CLD3_HUMAN: 49.29% identity 
    8723 sp|O95832|CLD1_HUMAN vs. sp|Q9Z0G9|CLD3_MOUSE: 48.82% identity 
    8724 sp|O95832|CLD1_HUMAN vs. sp|O35054|CLD4_MOUSE: 48.10% identity 
    8725 sp|O95832|CLD1_HUMAN vs. sp|O14493|CLD4_HUMAN: 46.89% identity 
    8726 sp|O95832|CLD1_HUMAN vs. tr|G7P183|G7P183_MACFA: 40.00% identity 
    8727 sp|O88551|CLD1_MOUSE vs. sp|O00501|CLD5_HUMAN: 44.08% identity 
    8728 sp|O88551|CLD1_MOUSE vs. sp|O54942|CLD5_MOUSE: 43.60% identity 
    8729 sp|O88551|CLD1_MOUSE vs. sp|Q9Z262|CLD6_MOUSE: 48.34% identity 
    8730 sp|O88551|CLD1_MOUSE vs. sp|O95484|CLD9_HUMAN: 47.39% identity 
    8731 sp|O88551|CLD1_MOUSE vs. sp|O15551|CLD3_HUMAN: 47.39% identity 
    8732 sp|O88551|CLD1_MOUSE vs. sp|Q9Z0G9|CLD3_MOUSE: 45.50% identity 
    8733 sp|O88551|CLD1_MOUSE vs. sp|O35054|CLD4_MOUSE: 45.71% identity 
    8734 sp|O88551|CLD1_MOUSE vs. sp|O14493|CLD4_HUMAN: 45.93% identity 
    8735 sp|O88551|CLD1_MOUSE vs. tr|G7P183|G7P183_MACFA: 38.46% identity 
    8736 sp|O00501|CLD5_HUMAN vs. sp|O54942|CLD5_MOUSE: 91.74% identity 
    8737 sp|O00501|CLD5_HUMAN vs. sp|Q9Z262|CLD6_MOUSE: 50.92% identity 
    8738 sp|O00501|CLD5_HUMAN vs. sp|O95484|CLD9_HUMAN: 54.38% identity 
    8739 sp|O00501|CLD5_HUMAN vs. sp|O15551|CLD3_HUMAN: 54.13% identity 
    8740 sp|O00501|CLD5_HUMAN vs. sp|Q9Z0G9|CLD3_MOUSE: 53.21% identity 
    8741 sp|O00501|CLD5_HUMAN vs. sp|O35054|CLD4_MOUSE: 50.48% identity 
    8742 sp|O00501|CLD5_HUMAN vs. sp|O14493|CLD4_HUMAN: 49.76% identity 
    8743 sp|O00501|CLD5_HUMAN vs. tr|G7P183|G7P183_MACFA: 43.85% identity 
    8744 sp|O54942|CLD5_MOUSE vs. sp|Q9Z262|CLD6_MOUSE: 51.38% identity 
    8745 sp|O54942|CLD5_MOUSE vs. sp|O95484|CLD9_HUMAN: 53.92% identity 
    8746 sp|O54942|CLD5_MOUSE vs. sp|O15551|CLD3_HUMAN: 52.29% identity 
    8747 sp|O54942|CLD5_MOUSE vs. sp|Q9Z0G9|CLD3_MOUSE: 50.92% identity 
    8748 sp|O54942|CLD5_MOUSE vs. sp|O35054|CLD4_MOUSE: 51.43% identity 
    8749 sp|O54942|CLD5_MOUSE vs. sp|O14493|CLD4_HUMAN: 47.85% identity 
    8750 sp|O54942|CLD5_MOUSE vs. tr|G7P183|G7P183_MACFA: 41.54% identity 
    8751 sp|Q9Z262|CLD6_MOUSE vs. sp|O95484|CLD9_HUMAN: 70.97% identity 
    8752 sp|Q9Z262|CLD6_MOUSE vs. sp|O15551|CLD3_HUMAN: 57.08% identity 
    8753 sp|Q9Z262|CLD6_MOUSE vs. sp|Q9Z0G9|CLD3_MOUSE: 58.45% identity 
    8754 sp|Q9Z262|CLD6_MOUSE vs. sp|O35054|CLD4_MOUSE: 60.95% identity 
    8755 sp|Q9Z262|CLD6_MOUSE vs. sp|O14493|CLD4_HUMAN: 61.72% identity 
    8756 sp|Q9Z262|CLD6_MOUSE vs. tr|G7P183|G7P183_MACFA: 54.62% identity 
    8757 sp|O95484|CLD9_HUMAN vs. sp|O15551|CLD3_HUMAN: 64.98% identity 
    8758 sp|O95484|CLD9_HUMAN vs. sp|Q9Z0G9|CLD3_MOUSE: 64.98% identity 
    8759 sp|O95484|CLD9_HUMAN vs. sp|O35054|CLD4_MOUSE: 62.38% identity 
    8760 sp|O95484|CLD9_HUMAN vs. sp|O14493|CLD4_HUMAN: 64.59% identity 
    8761 sp|O95484|CLD9_HUMAN vs. tr|G7P183|G7P183_MACFA: 59.23% identity 
    8762 sp|O15551|CLD3_HUMAN vs. sp|Q9Z0G9|CLD3_MOUSE: 89.50% identity 
    8763 sp|O15551|CLD3_HUMAN vs. sp|O35054|CLD4_MOUSE: 67.14% identity 
    8764 sp|O15551|CLD3_HUMAN vs. sp|O14493|CLD4_HUMAN: 70.33% identity 
    8765 sp|O15551|CLD3_HUMAN vs. tr|G7P183|G7P183_MACFA: 63.08% identity 
    8766 sp|Q9Z0G9|CLD3_MOUSE vs. sp|O35054|CLD4_MOUSE: 67.62% identity 
    8767 sp|Q9Z0G9|CLD3_MOUSE vs. sp|O14493|CLD4_HUMAN: 68.42% identity 
    8768 sp|Q9Z0G9|CLD3_MOUSE vs. tr|G7P183|G7P183_MACFA: 63.85% identity 
    8769 sp|O35054|CLD4_MOUSE vs. sp|O14493|CLD4_HUMAN: 83.73% identity 
    8770 sp|O35054|CLD4_MOUSE vs. tr|G7P183|G7P183_MACFA: 82.31% identity 
    8771 sp|O14493|CLD4_HUMAN vs. tr|G7P183|G7P183_MACFA: 99.23% identity 
    8772 
    8773 > hide #3.1 models
    8774 
    8775 > show #3.1 models
    8776 
    8777 > hide #3.1 models
    8778 
    8779 > select #3/A:151
    8780 
    8781 8 atoms, 7 bonds, 1 residue, 1 model selected 
    8782 
    8783 > select up
    8784 
    8785 37 atoms, 37 bonds, 6 residues, 2 models selected 
    8786 
    8787 > select clear
    8788 
    8789 > select #1/A:149-153 #2/A:149-153 #3/A:149-153 #6/A:149-153 #7/A:149-153
    8790 > #8/A:149-153 #9/A:149-153 #10/A:149-153 #11/A:149-153 #12/A:149-153
    8791 > #13/A:149-153 #15/A:149-153 #16/A:149-153 #17/A:149-153 #18/A:149-153
    8792 > #19/A:149-153 #21/A:149-153 #22/A:149-153 #23/A:149-153 #24/A:149-153
    8793 > #25/A:149-153 #26/A:149-153 #41/A:149-153 #40/A:149-153 #42/A:149-153
    8794 > #43/A:149-153 #44/A:149-153 #45/A:149-153 #47/A:149-153 #48/A:149-153
    8795 > #49/A:149-153 #27/A:149-153 #28/A:149-153 #29/A:149-153 #46/A:149-153
    8796 > #100.1/A:149-153 #30/A:149-153 #31/A:149-153 #32/A:149-153 #33/A:149-153
    8797 > #34/A:149-153 #35/A:149-153 #36/A:149-153 #37/A:149-153 #38/A:149-153
    8798 > #39/A:149-153 #50/A:149-153 #51/A:149-153 #52/A:149-153 #53/A:149-153
    8799 > #54/A:149-153 #55/A:149-153 #56/A:149-153 #57/A:149-153 #58/A:149-153
    8800 > #59/A:149-153
    8801 
    8802 2014 atoms, 2014 bonds, 41 pseudobonds, 280 residues, 63 models selected 
    8803 muscle-I20250623-145406-0980-39275076-p1m.fa [ID:
    8804 muscle-I20250623-145406-0980-39275076-p1m.fa] region
    8805 sp|P57739|CLD2_HUMAN..tr|G7P183|G7P183_MACFA [150-154] RMSD: 1.792 
    8806  
    8807 
    8808 > select #1/A:149-153 #2/A:149-153 #3/A:149-153 #6/A:149-153 #7/A:149-153
    8809 > #8/A:149-153 #9/A:149-153 #10/A:149-153 #11/A:149-153 #12/A:149-153
    8810 > #13/A:149-153 #15/A:149-153 #16/A:149-153 #17/A:149-153 #18/A:149-153
    8811 > #19/A:149-153 #21/A:149-153 #22/A:149-153 #23/A:149-153 #24/A:149-153
    8812 > #25/A:149-153 #26/A:149-153 #41/A:149-153 #40/A:149-153 #42/A:149-153
    8813 > #43/A:149-153 #44/A:149-153 #45/A:149-153 #47/A:149-153 #48/A:149-153
    8814 > #49/A:149-153 #27/A:149-153 #28/A:149-153 #29/A:149-153 #46/A:149-153
    8815 > #100.1/A:149-153 #30/A:149-153 #31/A:149-153 #32/A:149-153 #33/A:149-153
    8816 > #34/A:149-153 #35/A:149-153 #36/A:149-153 #37/A:149-153 #38/A:149-153
    8817 > #39/A:149-153 #50/A:149-153 #51/A:149-153 #52/A:149-153 #53/A:149-153
    8818 > #54/A:149-153 #55/A:149-153 #56/A:149-153 #57/A:149-153 #58/A:149-153
    8819 > #59/A:149-153
    8820 
    8821 2014 atoms, 2014 bonds, 41 pseudobonds, 280 residues, 63 models selected 
    8822 
    8823 > select #1/A:149-153 #2/A:149-153 #3/A:149-153 #6/A:149-153 #7/A:149-153
    8824 > #8/A:149-153 #9/A:149-153 #10/A:149-153 #11/A:149-153 #12/A:149-153
    8825 > #13/A:149-153 #15/A:149-153 #16/A:149-153 #17/A:149-153 #18/A:149-153
    8826 > #19/A:149-153 #21/A:149-153 #22/A:149-153 #23/A:149-153 #24/A:149-153
    8827 > #25/A:149-153 #26/A:149-153 #41/A:149-153 #40/A:149-153 #42/A:149-153
    8828 > #43/A:149-153 #44/A:149-153 #45/A:149-153 #47/A:149-153 #48/A:149-153
    8829 > #49/A:149-153 #27/A:149-153 #28/A:149-153 #29/A:149-153 #46/A:149-153
    8830 > #100.1/A:149-153 #30/A:149-153 #31/A:149-153 #32/A:149-153 #33/A:149-153
    8831 > #34/A:149-153 #35/A:149-153 #36/A:149-153 #37/A:149-153 #38/A:149-153
    8832 > #39/A:149-153 #50/A:149-153 #51/A:149-153 #52/A:149-153 #53/A:149-153
    8833 > #54/A:149-153 #55/A:149-153 #56/A:149-153 #57/A:149-153 #58/A:149-153
    8834 > #59/A:149-153
    8835 
    8836 2014 atoms, 2014 bonds, 41 pseudobonds, 280 residues, 63 models selected 
    8837 
    8838 > select #1/A:158 #2/A:158 #3/A:158 #6/A:158 #7/A:158 #8/A:158 #9/A:158
    8839 > #10/A:158 #11/A:158 #12/A:158 #13/A:158 #15/A:158 #16/A:158 #17/A:158
    8840 > #18/A:158 #19/A:158 #21/A:158 #22/A:158 #23/A:158 #24/A:158 #25/A:158
    8841 > #26/A:158 #41/A:158 #40/A:158 #42/A:158 #43/A:158 #44/A:158 #45/A:158
    8842 > #47/A:158 #48/A:158 #49/A:158 #27/A:158 #28/A:158 #29/A:158 #46/A:158
    8843 > #100.1/A:158 #30/A:158 #31/A:158 #32/A:158 #33/A:158 #34/A:158 #35/A:158
    8844 > #36/A:158 #37/A:158 #38/A:158 #39/A:158 #50/A:158 #51/A:158 #52/A:158
    8845 > #53/A:158 #54/A:158 #55/A:158 #56/A:158 #57/A:158 #58/A:158 #59/A:158
    8846 
    8847 670 atoms, 614 bonds, 4 pseudobonds, 56 residues, 57 models selected 
    8848 
    8849 > select #1/A:158 #2/A:158 #3/A:158 #6/A:158 #7/A:158 #8/A:158 #9/A:158
    8850 > #10/A:158 #11/A:158 #12/A:158 #13/A:158 #15/A:158 #16/A:158 #17/A:158
    8851 > #18/A:158 #19/A:158 #21/A:158 #22/A:158 #23/A:158 #24/A:158 #25/A:158
    8852 > #26/A:158 #41/A:158 #40/A:158 #42/A:158 #43/A:158 #44/A:158 #45/A:158
    8853 > #47/A:158 #48/A:158 #49/A:158 #27/A:158 #28/A:158 #29/A:158 #46/A:158
    8854 > #100.1/A:158 #30/A:158 #31/A:158 #32/A:158 #33/A:158 #34/A:158 #35/A:158
    8855 > #36/A:158 #37/A:158 #38/A:158 #39/A:158 #50/A:158 #51/A:158 #52/A:158
    8856 > #53/A:158 #54/A:158 #55/A:158 #56/A:158 #57/A:158 #58/A:158 #59/A:158
    8857 
    8858 670 atoms, 614 bonds, 4 pseudobonds, 56 residues, 57 models selected 
    8859 muscle-I20250623-145406-0980-39275076-p1m.fa [ID:
    8860 muscle-I20250623-145406-0980-39275076-p1m.fa] region sp|O14493|CLD4_HUMAN
    8861 [159] RMSD: 1.000 
    8862  
    8863 
    8864 > select #1/A:158 #2/A:158 #3/A:158 #6/A:158 #7/A:158 #8/A:158 #9/A:158
    8865 > #10/A:158 #11/A:158 #12/A:158 #13/A:158 #15/A:158 #16/A:158 #17/A:158
    8866 > #18/A:158 #19/A:158 #21/A:158 #22/A:158 #23/A:158 #24/A:158 #25/A:158
    8867 > #26/A:158 #27/A:158 #28/A:158 #29/A:158 #30/A:158 #31/A:158 #32/A:158
    8868 > #33/A:158 #34/A:158 #35/A:158 #36/A:158 #37/A:158 #38/A:158 #39/A:158
    8869 > #40/A:158 #41/A:158 #42/A:158 #43/A:158 #44/A:158 #45/A:158 #46/A:158
    8870 > #47/A:158 #48/A:158 #49/A:158 #50/A:158 #51/A:158 #52/A:158 #53/A:158
    8871 > #54/A:158 #55/A:158 #56/A:158 #57/A:158 #58/A:158 #59/A:158 #100.1/A:158
    8872 
    8873 670 atoms, 614 bonds, 4 pseudobonds, 56 residues, 57 models selected 
    8874 
    8875 > select clear
    8876 
    8877 > select #1/A:158 #2/A:158 #3/A:158 #6/A:158 #7/A:158 #8/A:158 #9/A:158
    8878 > #10/A:158 #11/A:158 #12/A:158 #13/A:158 #15/A:158 #16/A:158 #17/A:158
    8879 > #18/A:158 #19/A:158 #21/A:158 #22/A:158 #23/A:158 #24/A:158 #25/A:158
    8880 > #26/A:158 #41/A:158 #40/A:158 #42/A:158 #43/A:158 #44/A:158 #45/A:158
    8881 > #47/A:158 #48/A:158 #49/A:158 #27/A:158 #28/A:158 #29/A:158 #46/A:158
    8882 > #100.1/A:158 #30/A:158 #31/A:158 #32/A:158 #33/A:158 #34/A:158 #35/A:158
    8883 > #36/A:158 #37/A:158 #38/A:158 #39/A:158 #50/A:158 #51/A:158 #52/A:158
    8884 > #53/A:158 #54/A:158 #55/A:158 #56/A:158 #57/A:158 #58/A:158 #59/A:158
    8885 
    8886 670 atoms, 614 bonds, 4 pseudobonds, 56 residues, 57 models selected 
    8887 muscle-I20250623-145406-0980-39275076-p1m.fa [ID:
    8888 muscle-I20250623-145406-0980-39275076-p1m.fa] region
    8889 sp|P57739|CLD2_HUMAN..tr|G7P183|G7P183_MACFA [159] RMSD: 1.000 
    8890  
    8891 
    8892 > select clear
    8893 
    8894 > select #1/A:145 #2/A:145 #3/A:145 #6/A:145 #7/A:145 #8/A:145 #9/A:145
    8895 > #10/A:145 #11/A:145 #12/A:145 #13/A:145 #15/A:145 #16/A:145 #17/A:145
    8896 > #18/A:145 #19/A:145 #21/A:145 #22/A:145 #23/A:145 #24/A:145 #25/A:145
    8897 > #26/A:145 #41/A:145 #40/A:145 #42/A:145 #43/A:145 #44/A:145 #45/A:145
    8898 > #47/A:145 #48/A:145 #49/A:145 #27/A:145 #28/A:145 #29/A:145 #46/A:145
    8899 > #100.1/A:145 #30/A:145 #31/A:145 #32/A:145 #33/A:145 #34/A:145 #35/A:145
    8900 > #36/A:145 #37/A:145 #38/A:145 #39/A:145 #50/A:145 #51/A:145 #52/A:145
    8901 > #53/A:145 #54/A:145 #55/A:145 #56/A:145 #57/A:145 #58/A:145 #59/A:145
    8902 
    8903 531 atoms, 475 bonds, 56 residues, 56 models selected 
    8904 muscle-I20250623-145406-0980-39275076-p1m.fa [ID:
    8905 muscle-I20250623-145406-0980-39275076-p1m.fa] region
    8906 sp|P57739|CLD2_HUMAN..tr|G7P183|G7P183_MACFA [146] RMSD: 0.787 
    8907  
    8908 
    8909 > select clear
    8910 
    8911 > select #1/A:158 #2/A:158 #3/A:158 #6/A:158 #7/A:158 #8/A:158 #9/A:158
    8912 > #10/A:158 #11/A:158 #12/A:158 #13/A:158 #15/A:158 #16/A:158 #17/A:158
    8913 > #18/A:158 #19/A:158 #21/A:158 #22/A:158 #23/A:158 #24/A:158 #25/A:158
    8914 > #26/A:158 #41/A:158 #40/A:158 #42/A:158 #43/A:158 #44/A:158 #45/A:158
    8915 > #47/A:158 #48/A:158 #49/A:158 #27/A:158 #28/A:158 #29/A:158 #46/A:158
    8916 > #100.1/A:158 #30/A:158 #31/A:158 #32/A:158 #33/A:158 #34/A:158 #35/A:158
    8917 > #36/A:158 #37/A:158 #38/A:158 #39/A:158 #50/A:158 #51/A:158 #52/A:158
    8918 > #53/A:158 #54/A:158 #55/A:158 #56/A:158 #57/A:158 #58/A:158 #59/A:158
    8919 
    8920 670 atoms, 614 bonds, 4 pseudobonds, 56 residues, 57 models selected 
    8921 muscle-I20250623-145406-0980-39275076-p1m.fa [ID:
    8922 muscle-I20250623-145406-0980-39275076-p1m.fa] region
    8923 sp|P57739|CLD2_HUMAN..tr|G7P183|G7P183_MACFA [159] RMSD: 1.000 
    8924  
    8925 
    8926 > select clear
    8927 
    8928 > select #1/A:31 #2/A:31 #3/A:31 #6/A:31 #7/A:31 #8/A:31 #9/A:31 #10/A:31
    8929 > #11/A:31 #12/A:31 #13/A:31 #15/A:31 #16/A:31 #17/A:31 #18/A:31 #19/A:31
    8930 > #21/A:31 #22/A:31 #23/A:31 #24/A:31 #25/A:31 #26/A:31 #41/A:31 #40/A:31
    8931 > #42/A:31 #43/A:31 #44/A:31 #45/A:31 #47/A:31 #48/A:31 #49/A:31 #27/A:31
    8932 > #28/A:31 #29/A:31 #46/A:31 #100.1/A:31 #30/A:31 #31/A:31 #32/A:31 #33/A:31
    8933 > #34/A:31 #35/A:31 #36/A:31 #37/A:31 #38/A:31 #39/A:31 #50/A:31 #51/A:31
    8934 > #52/A:31 #53/A:31 #54/A:31 #55/A:31 #56/A:31 #57/A:31 #58/A:31 #59/A:31
    8935 
    8936 670 atoms, 614 bonds, 13 pseudobonds, 56 residues, 57 models selected 
    8937 muscle-I20250623-145406-0980-39275076-p1m.fa [ID:
    8938 muscle-I20250623-145406-0980-39275076-p1m.fa] region
    8939 sp|P57739|CLD2_HUMAN..sp|O14493|CLD4_HUMAN [31] RMSD: 0.528 
    8940  
    8941 
    8942 > close #18,21-26,37,43-45,47-53,56-59#9-13,15-17,19,27-36,38-42,46,54-55
    8943 
    8944 > hide #!3 models
    8945 
    8946 > show #!100 models
    8947 
    8948 > show #!100.1 models
    8949 
    8950 > hide #!100.1 models
    8951 
    8952 > hide #!100 models
    8953 
    8954 > show #!3 models
    8955 
    8956 > save
    8957 > /Users/adaina/Documents/PROJETS/DEBIO/service_MM0033_Claudin4/sequences/claudins.cxs
     1746[deleted to fit within ticket limits]
     1747
    89581748
    89591749> show #!4 models