Changes between Initial Version and Version 1 of Ticket #1756


Ignore:
Timestamp:
Mar 7, 2019, 9:47:52 AM (7 years ago)
Author:
Elaine Meng
Comment:

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  • Ticket #1756

    • Property Component Unassigned → Volume Data
    • Property Owner set to Tom Goddard
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → hide/show DICOM SEG gives AttributeError: 'NoneType' object has no attribute 'redraw_needed'

  • Ticket #1756 – Description

    initial v1  
    1 {{{
    2 The following bug report has been submitted:
     1
    32Platform:        Darwin-17.7.0-x86_64-i386-64bit
    43ChimeraX Version: 0.9 (2019-03-07)
     4
    55Description
    66With the dataset that includes a CT scan and associated SEG models, showing/hiding the SEG models (e.g. with checkboxes in the Model Panel) gives a traceback.  Example dataset
    … …  
    88
    99Log:
    10 > open /Users/meng/Desktop/startup.cxc
    11 
    12 > alias reset view orient; view initial
    13 
    14 > alias cartoon1 car style modeh def arrows t wid 2 thick 0.4; car style
    15 ~(nucleic|strand) x round; car style (nucleic|strand) x rect
    16 
    17 > alias nucrib cartoon1; car style nucleic x oval width 1.6 thick 1.6
    18 
    19 > alias cylinders cartoon1; car style protein modeh tube rad 2 sides 24
    20 
    21 > alias licorice cartoon1; car style protein modeh default arrows f x oval
    22 width 1 thick 1
    23 
    24 > alias cartoon2 surf close; cartoon; cylinders; car style nucleic x oval
    25 width 1.6 thick 1.6; nuc stubs
    26 
    27 > alias cartoon3 surf close; cartoon; licorice; car style nucleic x oval width
    28 1.6 thick 1.6; nuc tube/slab shape ellipsoid
    29 
    30 > alias surf1 surface; color white targ s; trans 75 targ s
    31 
    32 > alias pub set bg white; set silhouettes t
    33 
    34 > alias unpub set bg black; set silhouettes f
    35 
    36 executed startup.cxc 
    37 UCSF ChimeraX version: 0.9 (2019-03-07) 
    38 © 2016-2019 Regents of the University of California. All rights reserved. 
    39 How to cite UCSF ChimeraX 
    4010
    4111> open /Users/meng/Desktop/11*subset* format dicom
    … …  
    6232AttributeError: 'NoneType' object has no attribute 'redraw_needed' 
    6333
    64 > close
    65 
    66 Exception ignored in: <function Drawing.__del__ at 0x10c5e9d90> 
    67 Traceback (most recent call last): 
    68 File
    69 "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
    70 packages/chimerax/core/graphics/drawing.py", line 1086, in __del__ 
    71 self.delete() 
    72 File
    73 "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
    74 packages/chimerax/map/image3d.py", line 618, in delete 
    75 ir._remove_planes() 
    76 File
    77 "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
    78 packages/chimerax/map/image3d.py", line 532, in _remove_planes 
    79 self._drawing.redraw_needed() 
    80 AttributeError: 'NoneType' object has no attribute 'redraw_needed' 
    81 
    82 > open /Users/meng/Desktop/11*subset* format dicom
    83 
    84 Opened multi-channel map CHEST CT 4, 4 channels, grid size 512,512,236, pixel
    85 0.576,0.576,1.25, shown at step 1, values int16 
    86 
    87 > show #!1.1.1.1.4 models
    88 
    89 Exception ignored in: <function Drawing.__del__ at 0x10c5e9d90> 
    90 Traceback (most recent call last): 
    91 File
    92 "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
    93 packages/chimerax/core/graphics/drawing.py", line 1086, in __del__ 
    94 self.delete() 
    95 File
    96 "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
    97 packages/chimerax/map/image3d.py", line 618, in delete 
    98 ir._remove_planes() 
    99 File
    100 "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
    101 packages/chimerax/map/image3d.py", line 532, in _remove_planes 
    102 self._drawing.redraw_needed() 
    103 AttributeError: 'NoneType' object has no attribute 'redraw_needed' 
    104 
    105 > close
    106 
    107 Exception ignored in: <function Drawing.__del__ at 0x10c5e9d90> 
    108 Traceback (most recent call last): 
    109 File
    110 "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
    111 packages/chimerax/core/graphics/drawing.py", line 1086, in __del__ 
    112 self.delete() 
    113 File
    114 "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
    115 packages/chimerax/map/image3d.py", line 618, in delete 
    116 ir._remove_planes() 
    117 File
    118 "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
    119 packages/chimerax/map/image3d.py", line 532, in _remove_planes 
    120 self._drawing.redraw_needed() 
    121 AttributeError: 'NoneType' object has no attribute 'redraw_needed' 
    122 
    123 > open /Users/meng/Desktop/11*subset* format dicom
    124 
    125 Opened multi-channel map CHEST CT 4, 4 channels, grid size 512,512,236, pixel
    126 0.576,0.576,1.25, shown at step 1, values int16 
    127 
    128 > hide #!1.1.1.1.3 models
    129 
    130 Exception ignored in: <function Drawing.__del__ at 0x10c5e9d90> 
    131 Traceback (most recent call last): 
    132 File
    133 "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
    134 packages/chimerax/core/graphics/drawing.py", line 1086, in __del__ 
    135 self.delete() 
    136 File
    137 "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
    138 packages/chimerax/map/image3d.py", line 618, in delete 
    139 ir._remove_planes() 
    140 File
    141 "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
    142 packages/chimerax/map/image3d.py", line 532, in _remove_planes 
    143 self._drawing.redraw_needed() 
    144 AttributeError: 'NoneType' object has no attribute 'redraw_needed' 
    145 
    146 
    147 
    14834
    14935OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102
    … …  
    15137OpenGL vendor: NVIDIA Corporation
    15238
    153 }}}