Changes between Initial Version and Version 1 of Ticket #17480


Ignore:
Timestamp:
Apr 24, 2025, 1:14:52 PM (6 months ago)
Author:
pett
Comment:

Reported by Swastik

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #17480

    • Property Component Unassigned → Window Toolkit
    • Property Owner set to Tom Goddard
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → Crash on Mac waking from sleep

  • Ticket #17480 – Description

    initial v1  
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    1609     "size" : 633604,
    1610     "uuid" : "46d42bfa-b2b0-3ce5-a3d9-6ba9ff4607aa",
    1611     "path" : "\/usr\/lib\/dyld",
    1612     "name" : "dyld"
    1613   },
    1614   {
    1615     "size" : 0,
    1616     "source" : "A",
    1617     "base" : 0,
    1618     "uuid" : "00000000-0000-0000-0000-000000000000"
    1619   },
    1620   {
    1621     "source" : "P",
    1622     "arch" : "arm64e",
    1623     "base" : 6514077696,
    1624     "size" : 305408,
    1625     "uuid" : "c211ddea-e3c5-351d-8619-900c01bedfc9",
    1626     "path" : "\/usr\/lib\/system\/libxpc.dylib",
    1627     "name" : "libxpc.dylib"
    1628   },
    1629   {
    1630     "source" : "P",
    1631     "arch" : "arm64e",
    1632     "base" : 6513082368,
    1633     "size" : 342068,
    1634     "uuid" : "3262cd12-9cc3-3417-895f-e859872c3848",
    1635     "path" : "\/usr\/lib\/libobjc.A.dylib",
    1636     "name" : "libobjc.A.dylib"
    1637   }
     74[deleted to fit within ticket limits]
     75
    163876],
    163977  "sharedCache" : {
    … …  
    2515953 
    2516954
    2517 > fitmap #3 inMap #2
    2518 
    2519 Fit map 301_46FAB_GT1-1_RM20A3_J311_C3_map_sharp_2.96A.mrc in map
    2520 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 105956 points 
    2521 correlation = 0.7767, correlation about mean = 0.4363, overlap = 1.16e+04 
    2522 steps = 40, shift = 0.0197, angle = 0.0048 degrees 
    2523  
    2524 Position of 301_46FAB_GT1-1_RM20A3_J311_C3_map_sharp_2.96A.mrc (#3) relative
    2525 to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) coordinates: 
    2526 Matrix rotation and translation 
    2527 -0.42415555 0.90558934 -0.00007215 107.25180291 
    2528 0.90558934 0.42415555 0.00003551 -68.18926622 
    2529 0.00006276 -0.00005028 -0.99999999 426.18270658 
    2530 Axis -0.53658343 -0.84384727 -0.00000560 
    2531 Axis point 75.29581562 0.00000000 213.09411932 
    2532 Rotation angle (degrees) 179.99541972 
    2533 Shift along axis -0.01059903 
    2534  
    2535 
    2536 > fitmap #3 inMap #2
    2537 
    2538 Fit map 301_46FAB_GT1-1_RM20A3_J311_C3_map_sharp_2.96A.mrc in map
    2539 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 105956 points 
    2540 correlation = 0.7773, correlation about mean = 0.4363, overlap = 1.158e+04 
    2541 steps = 44, shift = 0.0164, angle = 0.00419 degrees 
    2542  
    2543 Position of 301_46FAB_GT1-1_RM20A3_J311_C3_map_sharp_2.96A.mrc (#3) relative
    2544 to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) coordinates: 
    2545 Matrix rotation and translation 
    2546 -0.42413686 0.90559810 -0.00000641 107.22991616 
    2547 0.90559810 0.42413686 0.00006024 -68.19353804 
    2548 0.00005727 0.00001974 -1.00000000 426.18552126 
    2549 Axis -0.53659168 -0.84384202 -0.00004481 
    2550 Axis point 75.29202788 0.00000000 213.09577004 
    2551 Rotation angle (degrees) 179.99783810 
    2552 Shift along axis -0.01320731 
    2553  
    2554 
    2555 > fitmap #3 inMap #2
    2556 
    2557 Fit map 301_46FAB_GT1-1_RM20A3_J311_C3_map_sharp_2.96A.mrc in map
    2558 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 105956 points 
    2559 correlation = 0.7773, correlation about mean = 0.4363, overlap = 1.158e+04 
    2560 steps = 28, shift = 0.00519, angle = 0.0103 degrees 
    2561  
    2562 Position of 301_46FAB_GT1-1_RM20A3_J311_C3_map_sharp_2.96A.mrc (#3) relative
    2563 to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) coordinates: 
    2564 Matrix rotation and translation 
    2565 -0.42408047 0.90562450 0.00008891 107.18850650 
    2566 0.90562450 0.42408048 -0.00007937 -68.15603414 
    2567 -0.00010959 0.00004686 -0.99999999 426.21430023 
    2568 Axis 0.53661910 0.84382459 -0.00001641 
    2569 Axis point 75.28056984 0.00000000 213.10275238 
    2570 Rotation angle (degrees) 179.99326119 
    2571 Shift along axis 0.00066874 
    2572  
    2573 
    2574 > fitmap #3 inMap #2
    2575 
    2576 Fit map 301_46FAB_GT1-1_RM20A3_J311_C3_map_sharp_2.96A.mrc in map
    2577 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 105956 points 
    2578 correlation = 0.7772, correlation about mean = 0.4363, overlap = 1.158e+04 
    2579 steps = 28, shift = 0.0143, angle = 0.0139 degrees 
    2580  
    2581 Position of 301_46FAB_GT1-1_RM20A3_J311_C3_map_sharp_2.96A.mrc (#3) relative
    2582 to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) coordinates: 
    2583 Matrix rotation and translation 
    2584 -0.42412876 0.90560188 -0.00013564 107.23557228 
    2585 0.90560189 0.42412877 -0.00000412 -68.17546394 
    2586 0.00005380 -0.00012458 -0.99999999 426.21382596 
    2587 Axis -0.53659603 -0.84383926 0.00003103 
    2588 Axis point 75.27994580 0.00000000 213.10922576 
    2589 Rotation angle (degrees) 179.99356840 
    2590 Shift along axis 0.00017611 
    2591  
    2592 
    2593 > fitmap #3 inMap #2
    2594 
    2595 Fit map 301_46FAB_GT1-1_RM20A3_J311_C3_map_sharp_2.96A.mrc in map
    2596 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 105956 points 
    2597 correlation = 0.777, correlation about mean = 0.4363, overlap = 1.159e+04 
    2598 steps = 40, shift = 0.0146, angle = 0.0105 degrees 
    2599  
    2600 Position of 301_46FAB_GT1-1_RM20A3_J311_C3_map_sharp_2.96A.mrc (#3) relative
    2601 to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) coordinates: 
    2602 Matrix rotation and translation 
    2603 -0.42414406 0.90559473 0.00004752 107.21308751 
    2604 0.90559473 0.42414406 -0.00000807 -68.18397645 
    2605 -0.00002746 0.00003961 -1.00000000 426.19030234 
    2606 Axis 0.53658994 0.84384313 -0.00000859 
    2607 Axis point 75.29084861 0.00000000 213.09339276 
    2608 Rotation angle (degrees) 179.99745441 
    2609 Shift along axis -0.01077787 
    2610  
    2611 
    2612 > show #!1 models
    2613 
    2614 > select subtract #3
    2615 
    2616 Nothing selected 
    2617 
    2618 > hide #!1 models
    2619 
    2620 > hide #!3 models
    2621 
    2622 > show #!4 models
    2623 
    2624 > fitmap #4 inMap #2
    2625 
    2626 Fit map 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc in map
    2627 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 79787 points 
    2628 correlation = 0.1973, correlation about mean = 0.1028, overlap = 349.5 
    2629 steps = 108, shift = 1.46, angle = 4.67 degrees 
    2630  
    2631 Position of 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc (#4) relative
    2632 to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) coordinates: 
    2633 Matrix rotation and translation 
    2634 0.77488265 -0.63208300 -0.00528755 178.35495426 
    2635 0.63209655 0.77488858 0.00127750 -84.42954451 
    2636 0.00328978 -0.00433215 0.99998520 1.15594249 
    2637 Axis -0.00443724 -0.00678467 0.99996714 
    2638 Axis point 207.70819851 208.20112941 0.00000000 
    2639 Rotation angle (degrees) 39.20600723 
    2640 Shift along axis 0.93732726 
    2641  
    2642 
    2643 > fitmap #4 inMap #2
    2644 
    2645 Fit map 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc in map
    2646 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 79787 points 
    2647 correlation = 0.1972, correlation about mean = 0.1028, overlap = 349.5 
    2648 steps = 40, shift = 0.00836, angle = 0.0014 degrees 
    2649  
    2650 Position of 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc (#4) relative
    2651 to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) coordinates: 
    2652 Matrix rotation and translation 
    2653 0.77487511 -0.63209228 -0.00528376 178.35250727 
    2654 0.63210575 0.77488112 0.00125651 -84.42047688 
    2655 0.00330006 -0.00431354 0.99998525 1.15396976 
    2656 Axis -0.00440585 -0.00678971 0.99996724 
    2657 Axis point 207.69194572 208.19749288 0.00000000 
    2658 Rotation angle (degrees) 39.20668532 
    2659 Shift along axis 0.94132777 
    2660  
    2661 
    2662 > fitmap #4 inMap #2
    2663 
    2664 Fit map 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc in map
    2665 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 79787 points 
    2666 correlation = 0.1972, correlation about mean = 0.1028, overlap = 349.5 
    2667 steps = 44, shift = 0.0152, angle = 0.00371 degrees 
    2668  
    2669 Position of 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc (#4) relative
    2670 to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) coordinates: 
    2671 Matrix rotation and translation 
    2672 0.77488530 -0.63208028 -0.00522418 178.32144819 
    2673 0.63209343 0.77489120 0.00123697 -84.41657295 
    2674 0.00326631 -0.00426068 0.99998559 1.14541546 
    2675 Axis -0.00434867 -0.00671602 0.99996799 
    2676 Axis point 207.67399054 208.16193427 0.00000000 
    2677 Rotation angle (degrees) 39.20575137 
    2678 Shift along axis 0.93686146 
    2679  
    2680 
    2681 > fitmap #4 inMap #2
    2682 
    2683 Fit map 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc in map
    2684 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 79787 points 
    2685 correlation = 0.1972, correlation about mean = 0.1028, overlap = 349.4 
    2686 steps = 48, shift = 0.00437, angle = 0.000558 degrees 
    2687  
    2688 Position of 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc (#4) relative
    2689 to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) coordinates: 
    2690 Matrix rotation and translation 
    2691 0.77488774 -0.63207736 -0.00521526 178.31449015 
    2692 0.63209047 0.77489361 0.00123600 -84.41717041 
    2693 0.00326003 -0.00425428 0.99998564 1.14401841 
    2694 Axis -0.00434286 -0.00670403 0.99996810 
    2695 Axis point 207.67208742 208.15334980 0.00000000 
    2696 Rotation angle (degrees) 39.20552902 
    2697 Shift along axis 0.93552348 
    2698  
    2699 
    2700 > fitmap #4 inMap #2
    2701 
    2702 Fit map 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc in map
    2703 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 79787 points 
    2704 correlation = 0.1972, correlation about mean = 0.1028, overlap = 349.5 
    2705 steps = 40, shift = 0.0189, angle = 0.00506 degrees 
    2706  
    2707 Position of 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc (#4) relative
    2708 to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) coordinates: 
    2709 Matrix rotation and translation 
    2710 0.77487541 -0.63209182 -0.00529443 178.35394975 
    2711 0.63210538 0.77488139 0.00127019 -84.42333969 
    2712 0.00329968 -0.00433087 0.99998518 1.15740149 
    2713 Axis -0.00443038 -0.00679785 0.99996708 
    2714 Axis point 207.69679291 208.19833128 0.00000000 
    2715 Rotation angle (degrees) 39.20666270 
    2716 Shift along axis 0.94108508 
    2717  
    2718 
    2719 > fitmap #4 inMap #2
    2720 
    2721 Fit map 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc in map
    2722 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 79787 points 
    2723 correlation = 0.1971, correlation about mean = 0.1027, overlap = 349.5 
    2724 steps = 44, shift = 0.0123, angle = 0.00547 degrees 
    2725  
    2726 Position of 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc (#4) relative
    2727 to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) coordinates: 
    2728 Matrix rotation and translation 
    2729 0.77485290 -0.63211929 -0.00530810 178.36296759 
    2730 0.63213262 0.77485931 0.00118241 -84.39731672 
    2731 0.00336560 -0.00427162 0.99998521 1.13829925 
    2732 Axis -0.00431389 -0.00686051 0.99996716 
    2733 Axis point 207.65789662 208.20988211 0.00000000 
    2734 Rotation angle (degrees) 39.20868161 
    2735 Shift along axis 0.94783166 
    2736  
    2737 
    2738 > fitmap #4 inMap #2
    2739 
    2740 Fit map 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc in map
    2741 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 79787 points 
    2742 correlation = 0.1972, correlation about mean = 0.1028, overlap = 349.5 
    2743 steps = 40, shift = 0.019, angle = 0.0047 degrees 
    2744  
    2745 Position of 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc (#4) relative
    2746 to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) coordinates: 
    2747 Matrix rotation and translation 
    2748 0.77487352 -0.63209435 -0.00526778 178.33152058 
    2749 0.63210772 0.77487952 0.00124624 -84.41786729 
    2750 0.00329415 -0.00429548 0.99998535 1.14848305 
    2751 Axis -0.00438343 -0.00677238 0.99996746 
    2752 Axis point 207.67733175 208.16823883 0.00000000 
    2753 Rotation angle (degrees) 39.20682485 
    2754 Shift along axis 0.93845215 
    2755  
    2756 
    2757 > fitmap #4 inMap #2
    2758 
    2759 Fit map 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc in map
    2760 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 79787 points 
    2761 correlation = 0.1973, correlation about mean = 0.1028, overlap = 349.5 
    2762 steps = 48, shift = 0.00263, angle = 0.00225 degrees 
    2763  
    2764 Position of 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc (#4) relative
    2765 to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) coordinates: 
    2766 Matrix rotation and translation 
    2767 0.77488736 -0.63207741 -0.00526576 178.32639994 
    2768 0.63209088 0.77489321 0.00127900 -84.42419888 
    2769 0.00327197 -0.00431952 0.99998532 1.15603396 
    2770 Axis -0.00442847 -0.00675341 0.99996739 
    2771 Axis point 207.68783262 208.16657537 0.00000000 
    2772 Rotation angle (degrees) 39.20557901 
    2773 Shift along axis 0.93643383 
    2774  
    2775 
    2776 > volume #4 level 0.2
    2777 
    2778 > fitmap #4 inMap #2
    2779 
    2780 Fit map 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc in map
    2781 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 13348 points 
    2782 correlation = 0.2724, correlation about mean = 0.04796, overlap = 247.4 
    2783 steps = 48, shift = 0.112, angle = 0.333 degrees 
    2784  
    2785 Position of 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc (#4) relative
    2786 to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) coordinates: 
    2787 Matrix rotation and translation 
    2788 0.77740785 -0.62897681 -0.00502051 177.05298983 
    2789 0.62897074 0.77742354 -0.00290507 -83.40706522 
    2790 0.00573029 -0.00089933 0.99998318 -0.13945041 
    2791 Axis 0.00159440 -0.00854598 0.99996221 
    2792 Axis point 206.36564296 208.45959872 0.00000000 
    2793 Rotation angle (degrees) 38.97620201 
    2794 Shift along axis 0.85564321 
    2795  
    2796 
    2797 > select add #4
    2798 
    2799 2 models selected 
    2800 
    2801 > view matrix models
    2802 > #4,0.99633,0.085119,-0.0085539,-15.064,-0.085138,0.99637,-0.0018054,22.043,0.0083691,0.002527,0.99996,-0.49206
    2803 
    2804 > ui mousemode right "rotate selected models"
    2805 
    2806 > view matrix models
    2807 > #4,0.80786,0.50057,0.3111,-126.16,-0.5173,0.85518,-0.032686,149.92,-0.28241,-0.13453,0.94981,100.26
    2808 
    2809 > ui mousemode right "translate selected models"
    2810 
    2811 > view matrix models
    2812 > #4,0.80786,0.50057,0.3111,-126.52,-0.5173,0.85518,-0.032686,145.94,-0.28241,-0.13453,0.94981,107.19
    2813 
    2814 > view matrix models
    2815 > #4,0.80786,0.50057,0.3111,-120.56,-0.5173,0.85518,-0.032686,142.7,-0.28241,-0.13453,0.94981,107.33
    2816 
    2817 > ui mousemode right "rotate selected models"
    2818 
    2819 > view matrix models
    2820 > #4,0.82269,0.4993,0.27182,-115.59,-0.52319,0.85201,0.018464,134.39,-0.22237,-0.1574,0.96217,96.884
    2821 
    2822 > view matrix models
    2823 > #4,0.8364,0.51003,0.20075,-106.56,-0.51334,0.85729,-0.03926,142.73,-0.19212,-0.070214,0.97886,68.782
    2824 
    2825 > fitmap #4 inMap #2
    2826 
    2827 Fit map 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc in map
    2828 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 13348 points 
    2829 correlation = 0.778, correlation about mean = 0.441, overlap = 1469 
    2830 steps = 240, shift = 7.5, angle = 24 degrees 
    2831  
    2832 Position of 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc (#4) relative
    2833 to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) coordinates: 
    2834 Matrix rotation and translation 
    2835 0.98989986 0.14176834 -0.00008846 -27.19768931 
    2836 -0.14176833 0.98989986 0.00012832 31.38065192 
    2837 0.00010576 -0.00011448 0.99999999 14.40124217 
    2838 Axis -0.00085635 -0.00068500 -0.99999940 
    2839 Axis point 206.55954738 206.64910319 0.00000000 
    2840 Rotation angle (degrees) 8.15019019 
    2841 Shift along axis -14.39943862 
    2842  
    2843 
    2844 > hide #!2 models
    2845 
    2846 > volume #4 step 1
    2847 
    2848 > fitmap #4 inMap #2
    2849 
    2850 Fit map 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc in map
    2851 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 106298 points 
    2852 correlation = 0.7775, correlation about mean = 0.4505, overlap = 1.184e+04 
    2853 steps = 40, shift = 0.0336, angle = 0.0168 degrees 
    2854  
    2855 Position of 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc (#4) relative
    2856 to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) coordinates: 
    2857 Matrix rotation and translation 
    2858 0.98993117 0.14154958 -0.00004348 -27.19445665 
    2859 -0.14154959 0.98993116 -0.00005788 31.36611676 
    2860 0.00003485 0.00006345 1.00000000 14.39985182 
    2861 Axis 0.00042857 -0.00027667 -0.99999987 
    2862 Axis point 206.85324971 206.79006339 0.00000000 
    2863 Rotation angle (degrees) 8.13752509 
    2864 Shift along axis -14.42018283 
    2865  
    2866 
    2867 > fitmap #4 inMap #2
    2868 
    2869 Fit map 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc in map
    2870 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 106298 points 
    2871 correlation = 0.7776, correlation about mean = 0.4505, overlap = 1.184e+04 
    2872 steps = 44, shift = 0.00936, angle = 0.00375 degrees 
    2873  
    2874 Position of 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc (#4) relative
    2875 to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) coordinates: 
    2876 Matrix rotation and translation 
    2877 0.98992990 0.14155843 0.00000969 -27.19777822 
    2878 -0.14155843 0.98992990 -0.00009492 31.37309699 
    2879 -0.00002303 0.00009260 1.00000000 14.40575452 
    2880 Axis 0.00066234 0.00011560 -0.99999977 
    2881 Axis point 206.92817617 206.78396574 0.00000000 
    2882 Rotation angle (degrees) 8.13803792 
    2883 Shift along axis -14.42013892 
    2884  
    2885 
    2886 > select subtract #4
    2887 
    2888 Nothing selected 
    2889 
    2890 > show #!5 models
    2891 
    2892 > hide #!4 models
    2893 
    2894 > show #!2 models
    2895 
    2896 > volume #5 level 0.2
    2897 
    2898 > select add #5
    2899 
    2900 2 models selected 
    2901 
    2902 > view matrix models
    2903 > #5,-0.32983,-0.87056,-0.36515,549.71,-0.9411,0.33371,0.054469,327.2,0.074435,0.36161,-0.92936,354.49
    2904 
    2905 > view matrix models
    2906 > #5,-0.37571,-0.90681,-0.19114,526.82,-0.88456,0.41242,-0.21787,361.65,0.27639,0.087221,-0.95708,375.65
    2907 
    2908 > view matrix models
    2909 > #5,-0.96433,-0.18361,0.19065,411.59,-0.136,0.96163,0.23825,-18.169,-0.22709,0.20382,-0.95231,456.97
    2910 
    2911 > ui mousemode right "translate selected models"
    2912 
    2913 > view matrix models
    2914 > #5,-0.96433,-0.18361,0.19065,397.85,-0.136,0.96163,0.23825,-19.064,-0.22709,0.20382,-0.95231,440.97
    2915 
    2916 > view matrix models
    2917 > #5,-0.96433,-0.18361,0.19065,396.69,-0.136,0.96163,0.23825,-20.751,-0.22709,0.20382,-0.95231,445.2
    2918 
    2919 > view matrix models
    2920 > #5,-0.96433,-0.18361,0.19065,408.89,-0.136,0.96163,0.23825,-6.3382,-0.22709,0.20382,-0.95231,445
    2921 
    2922 > fitmap #5 inMap #2
    2923 
    2924 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    2925 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 15340 points 
    2926 correlation = 0.3151, correlation about mean = 0.05182, overlap = 367.8 
    2927 steps = 80, shift = 3.44, angle = 3.76 degrees 
    2928  
    2929 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    2930 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    2931 coordinates: 
    2932 Matrix rotation and translation 
    2933 -0.61662034 -0.78306166 -0.08120215 513.55492940 
    2934 -0.76976867 0.57808185 0.27069830 197.04538291 
    2935 -0.16503197 0.22942495 -0.95923336 425.50308667 
    2936 Axis -0.43730918 0.88821357 0.14084507 
    2937 Axis point 310.92021699 0.00000000 190.24344010 
    2938 Rotation angle (degrees) 177.29520030 
    2939 Shift along axis 10.36610818 
    2940  
    2941 
    2942 > ui mousemode right "rotate selected models"
    2943 
    2944 > view matrix models
    2945 > #5,-0.97759,-0.17589,0.1157,426.52,-0.13949,0.95276,0.26981,-13.319,-0.15769,0.24763,-0.95594,419.92
    2946 
    2947 > view matrix models
    2948 > #5,-0.98877,-0.11508,-0.095323,464.93,-0.12423,0.98756,0.09636,16.25,0.083048,0.10712,-0.99077,406.37
    2949 
    2950 > ui mousemode right "translate selected models"
    2951 
    2952 > view matrix models
    2953 > #5,-0.98877,-0.11508,-0.095323,456.35,-0.12423,0.98756,0.09636,9.2465,0.083048,0.10712,-0.99077,405.46
    2954 
    2955 > fitmap #5 inMap #2
    2956 
    2957 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    2958 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 15340 points 
    2959 correlation = 0.3746, correlation about mean = 0.04927, overlap = 533.4 
    2960 steps = 152, shift = 3.43, angle = 5.87 degrees 
    2961  
    2962 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    2963 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    2964 coordinates: 
    2965 Matrix rotation and translation 
    2966 -0.57796014 -0.81396650 -0.05848609 507.55537837 
    2967 -0.81511046 0.57926500 -0.00685551 261.76583066 
    2968 0.03945910 0.04371041 -0.99826468 430.28702333 
    2969 Axis 0.45871540 -0.88852264 -0.01037760 
    2970 Axis point 314.67099891 0.00000000 221.52210204 
    2971 Rotation angle (degrees) 176.84043459 
    2972 Shift along axis -4.22674816 
    2973  
    2974 
    2975 > view matrix models
    2976 > #5,-0.98162,-0.1857,-0.044006,460.29,-0.18741,0.98152,0.038764,36.789,0.035994,0.046299,-0.99828,433.23
    2977 
    2978 > volume #5 step 1
    2979 
    2980 > fitmap #5 inMap #2
    2981 
    2982 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    2983 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 123308 points 
    2984 correlation = 0.3928, correlation about mean = 0.0576, overlap = 4606 
    2985 steps = 80, shift = 1.43, angle = 3.08 degrees 
    2986  
    2987 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    2988 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    2989 coordinates: 
    2990 Matrix rotation and translation 
    2991 -0.54337730 -0.83908673 -0.02597267 497.77595687 
    2992 -0.83919149 0.54374801 -0.00978482 273.96291751 
    2993 0.02233290 0.01647919 -0.99961477 443.37661540 
    2994 Axis 0.47766671 -0.87853906 -0.00190533 
    2995 Axis point 319.89635207 0.00000000 225.30022834 
    2996 Rotation angle (degrees) 178.42462686 
    2997 Shift along axis -3.76090071 
    2998  
    2999 
    3000 > hide #!5 models
    3001 
    3002 > show #!5 models
    3003 
    3004 > hide #!5 models
    3005 
    3006 > show #!5 models
    3007 
    3008 > view matrix models
    3009 > #5,-0.97332,-0.22834,-0.022588,461.88,-0.22869,0.9734,0.014128,52.222,0.018761,0.018917,-0.99965,444.87
    3010 
    3011 > view matrix models
    3012 > #5,-0.97332,-0.22834,-0.022588,464.21,-0.22869,0.9734,0.014128,50.886,0.018761,0.018917,-0.99965,444.69
    3013 
    3014 > fitmap #5 inMap #2
    3015 
    3016 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    3017 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 123308 points 
    3018 correlation = 0.3929, correlation about mean = 0.05772, overlap = 4606 
    3019 steps = 60, shift = 2.7, angle = 0.00276 degrees 
    3020  
    3021 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    3022 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3023 coordinates: 
    3024 Matrix rotation and translation 
    3025 -0.54341688 -0.83906100 -0.02597558 497.78314302 
    3026 -0.83916602 0.54378750 -0.00977488 273.95741731 
    3027 0.02232692 0.01648599 -0.99961479 443.37807158 
    3028 Axis 0.47764601 -0.87855031 -0.00191007 
    3029 Axis point 319.89456758 0.00000000 225.29996188 
    3030 Rotation angle (degrees) 178.42474700 
    3031 Shift along axis -3.76812272 
    3032  
    3033 
    3034 > hide #!5 models
    3035 
    3036 > ui tool show "Side View"
    3037 
    3038 > show #!5 models
    3039 
    3040 > hide #!5 models
    3041 
    3042 > show #!5 models
    3043 
    3044 > hide #!5 models
    3045 
    3046 > show #!5 models
    3047 
    3048 > hide #!5 models
    3049 
    3050 > show #!5 models
    3051 
    3052 > ui mousemode right "rotate selected models"
    3053 
    3054 > view matrix models
    3055 > #5,-0.96539,-0.26078,-0.0035254,463.35,-0.25875,0.95938,-0.1124,91.593,0.032693,-0.10759,-0.99366,467.7
    3056 
    3057 > ui mousemode right "translate selected models"
    3058 
    3059 > view matrix models
    3060 > #5,-0.96539,-0.26078,-0.0035254,463.73,-0.25875,0.95938,-0.1124,91.893,0.032693,-0.10759,-0.99366,469.1
    3061 
    3062 > volume #5 level 0.2498
    3063 
    3064 > fitmap #5 inMap #2
    3065 
    3066 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    3067 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 95260 points 
    3068 correlation = 0.841, correlation about mean = 0.5274, overlap = 1.372e+04 
    3069 steps = 108, shift = 8.28, angle = 7.64 degrees 
    3070  
    3071 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    3072 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3073 coordinates: 
    3074 Matrix rotation and translation 
    3075 -0.57082693 -0.82107040 0.00010283 494.58964991 
    3076 -0.82107040 0.57082694 -0.00000018 258.53196128 
    3077 -0.00005855 -0.00008454 -1.00000000 448.64244855 
    3078 Axis -0.46323494 0.88623551 -0.00002322 
    3079 Axis point 314.87362371 0.00000000 224.31190860 
    3080 Rotation angle (degrees) 179.99478330 
    3081 Shift along axis -0.00142261 
    3082  
    3083 
    3084 > select clear
    3085 
    3086 > hide #!2 models
    3087 
    3088 > show #!2 models
    3089 
    3090 > hide #!2 models
    3091 
    3092 > show #!2 models
    3093 
    3094 > hide #!2 models
    3095 
    3096 > show #!2 models
    3097 
    3098 > hide #!2 models
    3099 
    3100 > show #!2 models
    3101 
    3102 > hide #!2 models
    3103 
    3104 > volume #5 level 0.2
    3105 
    3106 > show #!2 models
    3107 
    3108 > fitmap #5 inMap #2
    3109 
    3110 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    3111 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 123308 points 
    3112 correlation = 0.8247, correlation about mean = 0.5544, overlap = 1.44e+04 
    3113 steps = 24, shift = 0.0012, angle = 0.00665 degrees 
    3114  
    3115 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    3116 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3117 coordinates: 
    3118 Matrix rotation and translation 
    3119 -0.57087024 -0.82104028 0.00015987 494.57869522 
    3120 -0.82104030 0.57087024 -0.00008649 258.53569071 
    3121 -0.00002025 -0.00018063 -0.99999998 448.65374265 
    3122 Axis -0.46321156 0.88624773 -0.00007475 
    3123 Axis point 314.86611631 0.00000000 224.32359703 
    3124 Rotation angle (degrees) 179.99417781 
    3125 Shift along axis -0.00143545 
    3126  
    3127 
    3128 > fitmap #5 inMap #2
    3129 
    3130 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    3131 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 123308 points 
    3132 correlation = 0.8247, correlation about mean = 0.5542, overlap = 1.439e+04 
    3133 steps = 28, shift = 0.00531, angle = 0.00855 degrees 
    3134  
    3135 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    3136 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3137 coordinates: 
    3138 Matrix rotation and translation 
    3139 -0.57081108 -0.82108143 0.00006305 494.59803596 
    3140 -0.82108143 0.57081108 0.00000121 258.53833280 
    3141 -0.00003698 -0.00005108 -1.00000000 448.62552352 
    3142 Axis -0.46324356 0.88623101 -0.00001298 
    3143 Axis point 314.87670087 0.00000000 224.30678012 
    3144 Rotation angle (degrees) 179.99676628 
    3145 Shift along axis -0.00048641 
    3146  
    3147 
    3148 > fitmap #5 inMap #2
    3149 
    3150 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    3151 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 123308 points 
    3152 correlation = 0.8246, correlation about mean = 0.5554, overlap = 1.449e+04 
    3153 steps = 28, shift = 0.0317, angle = 0.0115 degrees 
    3154  
    3155 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    3156 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3157 coordinates: 
    3158 Matrix rotation and translation 
    3159 -0.57068437 -0.82116949 0.00011478 494.57814056 
    3160 -0.82116950 0.57068436 -0.00011665 258.60602146 
    3161 0.00003029 -0.00016083 -0.99999999 448.66584539 
    3162 Axis -0.46331196 0.88619525 -0.00007699 
    3163 Axis point 314.89604324 0.00000000 224.33750388 
    3164 Rotation angle (degrees) 179.99726839 
    3165 Shift along axis -0.00307877 
    3166  
    3167 
    3168 > fitmap #5 inMap #2
    3169 
    3170 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    3171 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 123308 points 
    3172 correlation = 0.8247, correlation about mean = 0.5546, overlap = 1.442e+04 
    3173 steps = 28, shift = 0.0228, angle = 0.0129 degrees 
    3174  
    3175 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    3176 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3177 coordinates: 
    3178 Matrix rotation and translation 
    3179 -0.57081417 -0.82107927 0.00006429 494.59749183 
    3180 -0.82107927 0.57081418 0.00003423 258.52899996 
    3181 -0.00006481 -0.00003325 -1.00000000 448.63645122 
    3182 Axis -0.46324185 0.88623190 0.00000112 
    3183 Axis point 314.87574868 0.00000000 224.30789958 
    3184 Rotation angle (degrees) 179.99582680 
    3185 Shift along axis -0.00110739 
    3186  
    3187 
    3188 > fitmap #5 inMap #2
    3189 
    3190 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    3191 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 123308 points 
    3192 correlation = 0.8247, correlation about mean = 0.5545, overlap = 1.441e+04 
    3193 steps = 24, shift = 0.00145, angle = 0.00894 degrees 
    3194  
    3195 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    3196 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3197 coordinates: 
    3198 Matrix rotation and translation 
    3199 -0.57084146 -0.82106030 0.00011429 494.58721649 
    3200 -0.82106031 0.57084145 -0.00010977 258.55152642 
    3201 0.00002489 -0.00015650 -0.99999999 448.64219684 
    3202 Axis -0.46322718 0.88623957 -0.00007389 
    3203 Axis point 314.87093842 0.00000000 224.32484040 
    3204 Rotation angle (degrees) 179.99711026 
    3205 Shift along axis -0.00079886 
    3206  
    3207 
    3208 > volume #5 level 0.22
    3209 
    3210 > fitmap #5 inMap #2
    3211 
    3212 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    3213 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 110699 points 
    3214 correlation = 0.8314, correlation about mean = 0.5436, overlap = 1.42e+04 
    3215 steps = 28, shift = 0.0181, angle = 0.00844 degrees 
    3216  
    3217 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    3218 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3219 coordinates: 
    3220 Matrix rotation and translation 
    3221 -0.57075068 -0.82112341 0.00010255 494.58703942 
    3222 -0.82112342 0.57075068 -0.00001308 258.56207550 
    3223 -0.00004779 -0.00009167 -0.99999999 448.66172538 
    3224 Axis -0.46327610 0.88621400 -0.00002882 
    3225 Axis point 314.88704627 0.00000000 224.32323344 
    3226 Rotation angle (degrees) 179.99514019 
    3227 Shift along axis -0.00195901 
    3228  
    3229 
    3230 > fitmap #5 inMap #2
    3231 
    3232 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    3233 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 110699 points 
    3234 correlation = 0.8314, correlation about mean = 0.5428, overlap = 1.414e+04 
    3235 steps = 28, shift = 0.0192, angle = 0.0076 degrees 
    3236  
    3237 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    3238 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3239 coordinates: 
    3240 Matrix rotation and translation 
    3241 -0.57085211 -0.82105289 0.00013976 494.58363387 
    3242 -0.82105290 0.57085211 -0.00004398 258.53332843 
    3243 -0.00004367 -0.00013985 -0.99999999 448.65170571 
    3244 Axis -0.46322134 0.88624262 -0.00005126 
    3245 Axis point 314.87002147 0.00000000 224.31889213 
    3246 Rotation angle (degrees) 179.99407075 
    3247 Shift along axis -0.00144017 
    3248  
    3249 
    3250 > volume #5 level 0.24
    3251 
    3252 > fitmap #5 inMap #2
    3253 
    3254 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    3255 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 100063 points 
    3256 correlation = 0.8379, correlation about mean = 0.5327, overlap = 1.386e+04 
    3257 steps = 28, shift = 0.00107, angle = 0.0105 degrees 
    3258  
    3259 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    3260 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3261 coordinates: 
    3262 Matrix rotation and translation 
    3263 -0.57098295 -0.82096192 0.00007015 494.60710525 
    3264 -0.82096192 0.57098295 0.00001137 258.47469807 
    3265 -0.00004938 -0.00005110 -1.00000000 448.63360070 
    3266 Axis -0.46315077 0.88627951 -0.00001029 
    3267 Axis point 314.84876884 0.00000000 224.30889340 
    3268 Rotation angle (degrees) 179.99613635 
    3269 Shift along axis -0.00145221 
    3270  
    3271 
    3272 > volume #5 level 0.25
    3273 
    3274 > fitmap #5 inMap #2
    3275 
    3276 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    3277 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 95193 points 
    3278 correlation = 0.841, correlation about mean = 0.5273, overlap = 1.372e+04 
    3279 steps = 28, shift = 0.00066, angle = 0.00791 degrees 
    3280  
    3281 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    3282 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3283 coordinates: 
    3284 Matrix rotation and translation 
    3285 -0.57091205 -0.82101122 0.00005074 494.60660690 
    3286 -0.82101121 0.57091206 0.00011740 258.47609278 
    3287 -0.00012535 0.00002537 -0.99999999 448.63299906 
    3288 Axis -0.46318900 0.88625953 0.00004089 
    3289 Axis point 314.86001945 0.00000000 224.29667565 
    3290 Rotation angle (degrees) 179.99430796 
    3291 Shift along axis -0.00109140 
    3292  
    3293 
    3294 > fitmap #5 inMap #2
    3295 
    3296 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    3297 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 95193 points 
    3298 correlation = 0.841, correlation about mean = 0.5273, overlap = 1.372e+04 
    3299 steps = 28, shift = 0.000426, angle = 0.0128 degrees 
    3300  
    3301 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    3302 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3303 coordinates: 
    3304 Matrix rotation and translation 
    3305 -0.57096387 -0.82097518 0.00016192 494.58519412 
    3306 -0.82097519 0.57096386 -0.00006580 258.49920994 
    3307 -0.00003842 -0.00017050 -0.99999999 448.65535285 
    3308 Axis -0.46316102 0.88627415 -0.00006611 
    3309 Axis point 314.85189160 0.00000000 224.32154969 
    3310 Rotation angle (degrees) 179.99352418 
    3311 Shift along axis -0.00107816 
    3312  
    3313 
    3314 > volume #5 level 0.259
    3315 
    3316 > fitmap #5 inMap #2
    3317 
    3318 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    3319 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 91198 points 
    3320 correlation = 0.8435, correlation about mean = 0.522, overlap = 1.358e+04 
    3321 steps = 28, shift = 0.00222, angle = 0.0116 degrees 
    3322  
    3323 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    3324 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3325 coordinates: 
    3326 Matrix rotation and translation 
    3327 -0.57087079 -0.82103991 0.00004400 494.60543277 
    3328 -0.82103991 0.57087079 0.00005390 258.50434050 
    3329 -0.00006937 -0.00000536 -1.00000000 448.62554940 
    3330 Axis -0.46321131 0.88624787 0.00001466 
    3331 Axis point 314.86648025 0.00000000 224.30171288 
    3332 Rotation angle (degrees) 179.99633509 
    3333 Shift along axis -0.00133716 
    3334  
    3335 
    3336 > fitmap #5 inMap #2
    3337 
    3338 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    3339 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 91198 points 
    3340 correlation = 0.8435, correlation about mean = 0.522, overlap = 1.358e+04 
    3341 steps = 24, shift = 0.00188, angle = 0.0065 degrees 
    3342  
    3343 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    3344 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3345 coordinates: 
    3346 Matrix rotation and translation 
    3347 -0.57091857 -0.82100669 0.00001384 494.61336760 
    3348 -0.82100669 0.57091857 -0.00003879 258.50877767 
    3349 0.00002395 -0.00003351 -1.00000000 448.61202938 
    3350 Axis 0.46318399 -0.88626215 0.00003119 
    3351 Axis point 314.85771740 0.00000000 224.31135915 
    3352 Rotation angle (degrees) 179.99967332 
    3353 Shift along axis 0.00444137 
    3354  
    3355 
    3356 > volume #5 level 0.27
    3357 
    3358 > fitmap #5 inMap #2
    3359 
    3360 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    3361 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 86552 points 
    3362 correlation = 0.8467, correlation about mean = 0.5168, overlap = 1.351e+04 
    3363 steps = 28, shift = 0.028, angle = 0.00964 degrees 
    3364  
    3365 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    3366 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3367 coordinates: 
    3368 Matrix rotation and translation 
    3369 -0.57081728 -0.82107711 0.00009571 494.59273878 
    3370 -0.82107711 0.57081728 0.00004096 258.52425153 
    3371 -0.00008827 -0.00005520 -0.99999999 448.66731641 
    3372 Axis -0.46324014 0.88623280 -0.00000342 
    3373 Axis point 314.87573308 0.00000000 224.31967561 
    3374 Rotation angle (degrees) 179.99405283 
    3375 Shift along axis -0.00407730 
    3376  
    3377 
    3378 > fitmap #5 inMap #2
    3379 
    3380 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    3381 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 86552 points 
    3382 correlation = 0.8468, correlation about mean = 0.516, overlap = 1.345e+04 
    3383 steps = 28, shift = 0.019, angle = 0.00828 degrees 
    3384  
    3385 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    3386 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3387 coordinates: 
    3388 Matrix rotation and translation 
    3389 -0.57092594 -0.82100157 0.00004331 494.60920994 
    3390 -0.82100156 0.57092594 0.00006589 258.48128094 
    3391 -0.00007883 0.00000206 -1.00000000 448.63466582 
    3392 Axis -0.46318154 0.88626343 0.00002006 
    3393 Axis point 314.85744012 0.00000000 224.30479336 
    3394 Rotation angle (degrees) 179.99605192 
    3395 Shift along axis -0.00234827 
    3396  
    3397 
    3398 > volume #5 level 0.28
    3399 
    3400 > fitmap #5 inMap #2
    3401 
    3402 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    3403 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 82670 points 
    3404 correlation = 0.8496, correlation about mean = 0.511, overlap = 1.33e+04 
    3405 steps = 24, shift = 0.000977, angle = 0.00547 degrees 
    3406  
    3407 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    3408 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3409 coordinates: 
    3410 Matrix rotation and translation 
    3411 -0.57093209 -0.82099729 0.00004106 494.60961606 
    3412 -0.82099729 0.57093208 -0.00002925 258.50082675 
    3413 0.00000057 -0.00005040 -1.00000000 448.62840960 
    3414 Axis -0.46317846 0.88626504 -0.00001977 
    3415 Axis point 314.85634887 0.00000000 224.31390184 
    3416 Rotation angle (degrees) 179.99869138 
    3417 Shift along axis -0.00114542 
    3418  
    3419 
    3420 > volume #5 level 0.3
    3421 
    3422 > hide #!2 models
    3423 
    3424 > volume #5 level 0.2
    3425 
    3426 > volume #5 level 0.25
    3427 
    3428 > volume #5 level 0.24
    3429 
    3430 > volume #5 level 0.22
    3431 
    3432 > volume #5 level 0.2
    3433 
    3434 > volume #5 level 0.21
    3435 
    3436 > volume #5 level 0.215
    3437 
    3438 > show #!2 models
    3439 
    3440 > volume #2 level 0.21
    3441 
    3442 > fitmap #5 inMap #2
    3443 
    3444 Fit map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc in map
    3445 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 113626 points 
    3446 correlation = 0.8296, correlation about mean = 0.5463, overlap = 1.427e+04 
    3447 steps = 36, shift = 0.0158, angle = 0.0136 degrees 
    3448  
    3449 Position of 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    3450 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3451 coordinates: 
    3452 Matrix rotation and translation 
    3453 -0.57074499 -0.82112736 0.00010205 494.58548072 
    3454 -0.82112737 0.57074499 -0.00004623 258.57174110 
    3455 -0.00002028 -0.00011019 -0.99999999 448.66080256 
    3456 Axis -0.46327919 0.88621238 -0.00004323 
    3457 Axis point 314.88736787 0.00000000 224.32707800 
    3458 Rotation angle (degrees) 179.99604525 
    3459 Shift along axis -0.00108071 
    3460  
    3461 
    3462 > hide #!5 models
    3463 
    3464 > show #!6 models
    3465 
    3466 > fitmap #6 inMap #2
    3467 
    3468 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3469 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 79692 points 
    3470 correlation = 0.1989, correlation about mean = 0.1064, overlap = 403.7 
    3471 steps = 228, shift = 3.05, angle = 6.61 degrees 
    3472  
    3473 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3474 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3475 coordinates: 
    3476 Matrix rotation and translation 
    3477 0.76129795 -0.64674167 0.04637502 174.03800009 
    3478 0.64813918 0.75700323 -0.08283544 -68.95613884 
    3479 0.01846709 0.09311992 0.99548362 -21.12101678 
    3480 Axis 0.13461723 0.02135137 0.99066761 
    3481 Axis point 182.04351069 201.69548858 0.00000000 
    3482 Rotation angle (degrees) 40.80900004 
    3483 Shift along axis 1.03229873 
    3484  
    3485 
    3486 > fitmap #6 inMap #2
    3487 
    3488 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3489 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 79692 points 
    3490 correlation = 0.1988, correlation about mean = 0.1064, overlap = 403.6 
    3491 steps = 48, shift = 0.00956, angle = 0.00658 degrees 
    3492  
    3493 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3494 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3495 coordinates: 
    3496 Matrix rotation and translation 
    3497 0.76134845 -0.64668747 0.04630178 174.02409521 
    3498 0.64807751 0.75705037 -0.08288711 -68.94410058 
    3499 0.01854928 0.09311311 0.99548273 -21.14211885 
    3500 Axis 0.13466310 0.02123428 0.99066390 
    3501 Axis point 182.03275463 201.71033001 0.00000000 
    3502 Rotation angle (degrees) 40.80475938 
    3503 Shift along axis 1.02591196 
    3504  
    3505 
    3506 > volume #6 step 1
    3507 
    3508 > volume #6 level 0.2
    3509 
    3510 > fitmap #6 inMap #2
    3511 
    3512 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3513 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 131787 points 
    3514 correlation = 0.2664, correlation about mean = 0.05257, overlap = 2785 
    3515 steps = 120, shift = 1.35, angle = 7.19 degrees 
    3516  
    3517 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3518 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3519 coordinates: 
    3520 Matrix rotation and translation 
    3521 0.83337879 -0.55194207 0.02897827 144.28381922 
    3522 0.55096216 0.82545523 -0.12273695 -54.62799585 
    3523 0.04382342 0.11825230 0.99201608 -30.18738744 
    3524 Axis 0.21344928 -0.01314866 0.97686566 
    3525 Axis point 165.81104835 210.57213108 -0.00000000 
    3526 Rotation angle (degrees) 34.36839122 
    3527 Shift along axis 2.02654060 
    3528  
    3529 
    3530 > select add #6
    3531 
    3532 2 models selected 
    3533 
    3534 > view matrix models
    3535 > #6,0.98253,0.1736,-0.067042,-17.222,-0.18029,0.97725,-0.11174,51.121,0.046119,0.12188,0.99147,-20.826
    3536 
    3537 > fitmap #6 inMap #2
    3538 
    3539 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3540 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 131787 points 
    3541 correlation = 0.3224, correlation about mean = 0.04214, overlap = 3635 
    3542 steps = 160, shift = 4.34, angle = 9.1 degrees 
    3543  
    3544 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3545 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3546 coordinates: 
    3547 Matrix rotation and translation 
    3548 0.90690024 -0.42128123 -0.00735385 114.44969984 
    3549 0.41471965 0.89558607 -0.16103791 -38.23845199 
    3550 0.07442825 0.14299553 0.98692082 -30.95836559 
    3551 Axis 0.34034070 -0.09154842 0.93583497 
    3552 Axis point 146.72045895 228.35589092 0.00000000 
    3553 Rotation angle (degrees) 26.52962079 
    3554 Shift along axis 13.48063911 
    3555  
    3556 
    3557 > ui mousemode right "rotate selected models"
    3558 
    3559 > view matrix models
    3560 > #6,0.65348,0.72971,-0.20121,-32.448,-0.7296,0.67802,0.089337,190.68,0.20161,0.08842,0.97547,-44.719
    3561 
    3562 > fitmap #6 inMap #2
    3563 
    3564 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3565 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 131787 points 
    3566 correlation = 0.8876, correlation about mean = 0.6718, overlap = 1.738e+04 
    3567 steps = 236, shift = 11.7, angle = 18.4 degrees 
    3568  
    3569 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3570 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3571 coordinates: 
    3572 Matrix rotation and translation 
    3573 0.98565069 -0.16879788 -0.00003023 37.87932983 
    3574 0.16879788 0.98565068 -0.00003914 -31.93008337 
    3575 0.00003640 0.00003348 1.00000000 16.14105720 
    3576 Axis 0.00021512 -0.00019737 0.99999996 
    3577 Axis point 206.72363790 206.81249667 0.00000000 
    3578 Rotation angle (degrees) 9.71793325 
    3579 Shift along axis 16.15550715 
    3580  
    3581 
    3582 > fitmap #6 inMap #2
    3583 
    3584 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3585 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 131787 points 
    3586 correlation = 0.8876, correlation about mean = 0.6716, overlap = 1.736e+04 
    3587 steps = 40, shift = 0.0158, angle = 0.00994 degrees 
    3588  
    3589 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3590 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3591 coordinates: 
    3592 Matrix rotation and translation 
    3593 0.98567736 -0.16864206 -0.00001244 37.83811174 
    3594 0.16864205 0.98567735 -0.00010850 -31.88864954 
    3595 0.00003056 0.00010485 0.99999999 16.11173229 
    3596 Axis 0.00063256 -0.00012752 0.99999979 
    3597 Axis point 206.63843584 206.75918702 0.00000000 
    3598 Rotation angle (degrees) 9.70887667 
    3599 Shift along axis 16.13973015 
    3600  
    3601 
    3602 > hide #!6 models
    3603 
    3604 > show #!6 models
    3605 
    3606 > hide #!6 models
    3607 
    3608 > show #!6 models
    3609 
    3610 > hide #!6 models
    3611 
    3612 > show #!6 models
    3613 
    3614 > hide #!6 models
    3615 
    3616 > show #!6 models
    3617 
    3618 > hide #!6 models
    3619 
    3620 > show #!6 models
    3621 
    3622 > hide #!6 models
    3623 
    3624 > show #!6 models
    3625 
    3626 > hide #!6 models
    3627 
    3628 > show #!6 models
    3629 
    3630 > fitmap #6 inMap #2
    3631 
    3632 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3633 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 131787 points 
    3634 correlation = 0.8875, correlation about mean = 0.6719, overlap = 1.739e+04 
    3635 steps = 28, shift = 0.0216, angle = 0.00569 degrees 
    3636  
    3637 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3638 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3639 coordinates: 
    3640 Matrix rotation and translation 
    3641 0.98567064 -0.16868133 -0.00003422 37.85087365 
    3642 0.16868133 0.98567064 -0.00002012 -31.91417407 
    3643 0.00003712 0.00001406 1.00000000 16.15073426 
    3644 Axis 0.00010129 -0.00021145 0.99999997 
    3645 Axis point 206.74698235 206.82006772 0.00000000 
    3646 Rotation angle (degrees) 9.71115799 
    3647 Shift along axis 16.16131601 
    3648  
    3649 
    3650 > fitmap #6 inMap #2
    3651 
    3652 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3653 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 131787 points 
    3654 correlation = 0.8876, correlation about mean = 0.6716, overlap = 1.736e+04 
    3655 steps = 40, shift = 0.0203, angle = 0.00587 degrees 
    3656  
    3657 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3658 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3659 coordinates: 
    3660 Matrix rotation and translation 
    3661 0.98567867 -0.16863439 -0.00007395 37.84914453 
    3662 0.16863438 0.98567867 -0.00010175 -31.88911543 
    3663 0.00009005 0.00008783 0.99999999 16.10423973 
    3664 Axis 0.00056210 -0.00048627 0.99999972 
    3665 Axis point 206.62183366 206.84376547 0.00000000 
    3666 Rotation angle (degrees) 9.70843147 
    3667 Shift along axis 16.14101721 
    3668  
    3669 
    3670 > fitmap #6 inMap #2
    3671 
    3672 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3673 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 131787 points 
    3674 correlation = 0.8876, correlation about mean = 0.6717, overlap = 1.736e+04 
    3675 steps = 40, shift = 0.0014, angle = 0.00413 degrees 
    3676  
    3677 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3678 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3679 coordinates: 
    3680 Matrix rotation and translation 
    3681 0.98567881 -0.16863360 -0.00001310 37.83623117 
    3682 0.16863360 0.98567880 -0.00006298 -31.89695194 
    3683 0.00002353 0.00005987 1.00000000 16.12517272 
    3684 Axis 0.00036426 -0.00010862 0.99999993 
    3685 Axis point 206.69988112 206.78063282 0.00000000 
    3686 Rotation angle (degrees) 9.70838374 
    3687 Shift along axis 16.14241834 
    3688  
    3689 
    3690 > fitmap #6 inMap #2
    3691 
    3692 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3693 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 131787 points 
    3694 correlation = 0.8875, correlation about mean = 0.6719, overlap = 1.739e+04 
    3695 steps = 28, shift = 0.0212, angle = 0.00636 degrees 
    3696  
    3697 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3698 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3699 coordinates: 
    3700 Matrix rotation and translation 
    3701 0.98566404 -0.16871989 -0.00002617 37.85926022 
    3702 0.16871989 0.98566404 0.00000396 -31.92301518 
    3703 0.00002513 -0.00000832 1.00000000 16.15994577 
    3704 Axis -0.00003639 -0.00015204 0.99999999 
    3705 Axis point 206.76641233 206.82595956 0.00000000 
    3706 Rotation angle (degrees) 9.71339924 
    3707 Shift along axis 16.16342154 
    3708  
    3709 
    3710 > fitmap #6 inMap #2
    3711 
    3712 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3713 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 131787 points 
    3714 correlation = 0.8876, correlation about mean = 0.6718, overlap = 1.738e+04 
    3715 steps = 36, shift = 0.00804, angle = 0.00668 degrees 
    3716  
    3717 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3718 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3719 coordinates: 
    3720 Matrix rotation and translation 
    3721 0.98564845 -0.16881092 -0.00002055 37.88103302 
    3722 0.16881092 0.98564845 -0.00006691 -31.92589003 
    3723 0.00003155 0.00006248 1.00000000 16.13622351 
    3724 Axis 0.00038323 -0.00015429 0.99999991 
    3725 Axis point 206.68785351 206.79083743 0.00000000 
    3726 Rotation angle (degrees) 9.71869134 
    3727 Shift along axis 16.15566543 
    3728  
    3729 
    3730 > fitmap #6 inMap #2
    3731 
    3732 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3733 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 131787 points 
    3734 correlation = 0.8876, correlation about mean = 0.6718, overlap = 1.738e+04 
    3735 steps = 40, shift = 0.00127, angle = 0.00665 degrees 
    3736  
    3737 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3738 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3739 coordinates: 
    3740 Matrix rotation and translation 
    3741 0.98565474 -0.16877422 0.00001180 37.86510273 
    3742 0.16877422 0.98565474 0.00003822 -31.94204069 
    3743 -0.00001809 -0.00003568 1.00000000 16.16777534 
    3744 Axis -0.00021891 0.00008855 0.99999997 
    3745 Axis point 206.84425084 206.79345227 0.00000000 
    3746 Rotation angle (degrees) 9.71655779 
    3747 Shift along axis 16.15665715 
    3748  
    3749 
    3750 > fitmap #6 inMap #2
    3751 
    3752 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3753 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 131787 points 
    3754 correlation = 0.8876, correlation about mean = 0.6718, overlap = 1.738e+04 
    3755 steps = 40, shift = 0.000443, angle = 0.00497 degrees 
    3756  
    3757 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3758 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3759 coordinates: 
    3760 Matrix rotation and translation 
    3761 0.98565875 -0.16875076 -0.00001517 37.86495896 
    3762 0.16875076 0.98565875 -0.00004081 -31.92172230 
    3763 0.00002184 0.00003766 1.00000000 16.14479334 
    3764 Axis 0.00023251 -0.00010964 0.99999997 
    3765 Axis point 206.72866304 206.79288405 0.00000000 
    3766 Rotation angle (degrees) 9.71519372 
    3767 Shift along axis 16.15709666 
    3768  
    3769 
    3770 > fitmap #6 inMap #2
    3771 
    3772 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3773 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 131787 points 
    3774 correlation = 0.8876, correlation about mean = 0.6718, overlap = 1.738e+04 
    3775 steps = 40, shift = 0.00365, angle = 0.0047 degrees 
    3776  
    3777 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3778 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3779 coordinates: 
    3780 Matrix rotation and translation 
    3781 0.98565874 -0.16875080 -0.00007497 37.87756994 
    3782 0.16875081 0.98565875 0.00001528 -31.93347068 
    3783 0.00007132 -0.00002771 1.00000000 16.14443513 
    3784 Axis -0.00012739 -0.00043345 0.99999990 
    3785 Axis point 206.77616844 206.89796504 0.00000000 
    3786 Rotation angle (degrees) 9.71519715 
    3787 Shift along axis 16.15344974 
    3788  
    3789 
    3790 > fitmap #6 inMap #2
    3791 
    3792 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3793 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 131787 points 
    3794 correlation = 0.8875, correlation about mean = 0.6715, overlap = 1.735e+04 
    3795 steps = 40, shift = 0.0181, angle = 0.0102 degrees 
    3796  
    3797 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3798 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3799 coordinates: 
    3800 Matrix rotation and translation 
    3801 0.98567041 -0.16868266 0.00003211 37.83786448 
    3802 0.16868266 0.98567041 -0.00010870 -31.89400089 
    3803 -0.00001332 0.00011256 0.99999999 16.11503204 
    3804 Axis 0.00065587 0.00013467 0.99999978 
    3805 Axis point 206.64868079 206.69636187 0.00000000 
    3806 Rotation angle (degrees) 9.71123698 
    3807 Shift along axis 16.13554991 
    3808  
    3809 
    3810 > fitmap #6 inMap #2
    3811 
    3812 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3813 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 131787 points 
    3814 correlation = 0.8876, correlation about mean = 0.6716, overlap = 1.736e+04 
    3815 steps = 40, shift = 0.00634, angle = 0.00359 degrees 
    3816  
    3817 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3818 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3819 coordinates: 
    3820 Matrix rotation and translation 
    3821 0.98567618 -0.16864895 0.00000154 37.83681158 
    3822 0.16864895 0.98567618 -0.00006612 -31.89880107 
    3823 0.00000963 0.00006543 1.00000000 16.12606669 
    3824 Axis 0.00039001 -0.00002400 0.99999992 
    3825 Axis point 206.70154771 206.75942696 0.00000000 
    3826 Rotation angle (degrees) 9.70927621 
    3827 Shift along axis 16.14158778 
    3828  
    3829 
    3830 > fitmap #6 inMap #2
    3831 
    3832 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3833 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 131787 points 
    3834 correlation = 0.8875, correlation about mean = 0.6719, overlap = 1.739e+04 
    3835 steps = 28, shift = 0.0195, angle = 0.00465 degrees 
    3836  
    3837 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3838 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3839 coordinates: 
    3840 Matrix rotation and translation 
    3841 0.98566266 -0.16872795 -0.00000823 37.85743146 
    3842 0.16872795 0.98566266 -0.00005737 -31.91286709 
    3843 0.00001779 0.00005516 1.00000000 16.14591553 
    3844 Axis 0.00033344 -0.00007708 0.99999994 
    3845 Axis point 206.70083108 206.77370585 0.00000000 
    3846 Rotation angle (degrees) 9.71386794 
    3847 Shift along axis 16.16099781 
    3848  
    3849 
    3850 > volume #6 level 0.21
    3851 
    3852 > volume #6 level 0.215
    3853 
    3854 > fitmap #6 inMap #2
    3855 
    3856 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3857 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    3858 correlation = 0.8911, correlation about mean = 0.6632, overlap = 1.716e+04 
    3859 steps = 40, shift = 0.0244, angle = 0.00606 degrees 
    3860  
    3861 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3862 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3863 coordinates: 
    3864 Matrix rotation and translation 
    3865 0.98567766 -0.16864031 -0.00000468 37.83443321 
    3866 0.16864031 0.98567766 -0.00000006 -31.91068252 
    3867 0.00000462 -0.00000073 1.00000000 16.13586392 
    3868 Axis -0.00000199 -0.00002759 1.00000000 
    3869 Axis point 206.78289183 206.78834506 0.00000000 
    3870 Rotation angle (degrees) 9.70877310 
    3871 Shift along axis 16.13666900 
    3872  
    3873 
    3874 > fitmap #6 inMap #2
    3875 
    3876 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3877 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    3878 correlation = 0.8911, correlation about mean = 0.6633, overlap = 1.717e+04 
    3879 steps = 40, shift = 0.00465, angle = 0.00469 degrees 
    3880  
    3881 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3882 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3883 coordinates: 
    3884 Matrix rotation and translation 
    3885 0.98568079 -0.16862198 -0.00008358 37.84849708 
    3886 0.16862198 0.98568079 -0.00001208 -31.90523397 
    3887 0.00008442 -0.00000219 1.00000000 16.12376271 
    3888 Axis 0.00002931 -0.00049814 0.99999988 
    3889 Axis point 206.73358413 206.89925351 0.00000000 
    3890 Rotation angle (degrees) 9.70770910 
    3891 Shift along axis 16.14076320 
    3892  
    3893 
    3894 > fitmap #6 inMap #2
    3895 
    3896 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3897 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    3898 correlation = 0.8911, correlation about mean = 0.6633, overlap = 1.717e+04 
    3899 steps = 40, shift = 0.00124, angle = 0.00508 degrees 
    3900  
    3901 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3902 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3903 coordinates: 
    3904 Matrix rotation and translation 
    3905 0.98567846 -0.16863561 -0.00001530 37.83733849 
    3906 0.16863560 0.98567846 -0.00006685 -31.89597664 
    3907 0.00002636 0.00006331 1.00000000 16.12338470 
    3908 Axis 0.00038594 -0.00012352 0.99999992 
    3909 Axis point 206.69083473 206.78301112 0.00000000 
    3910 Rotation angle (degrees) 9.70850052 
    3911 Shift along axis 16.14192586 
    3912  
    3913 
    3914 > fitmap #6 inMap #2
    3915 
    3916 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3917 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    3918 correlation = 0.8911, correlation about mean = 0.6635, overlap = 1.719e+04 
    3919 steps = 28, shift = 0.016, angle = 0.00978 degrees 
    3920  
    3921 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3922 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3923 coordinates: 
    3924 Matrix rotation and translation 
    3925 0.98566323 -0.16872455 -0.00013517 37.88417082 
    3926 0.16872455 0.98566324 0.00001446 -31.92858732 
    3927 0.00013079 -0.00003706 0.99999999 16.13854041 
    3928 Axis -0.00015269 -0.00078815 0.99999968 
    3929 Axis point 206.74685767 206.97970295 0.00000000 
    3930 Rotation angle (degrees) 9.71367301 
    3931 Shift along axis 16.15791538 
    3932  
    3933 
    3934 > fitmap #6 inMap #2
    3935 
    3936 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3937 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    3938 correlation = 0.8911, correlation about mean = 0.6632, overlap = 1.716e+04 
    3939 steps = 40, shift = 0.0207, angle = 0.00702 degrees 
    3940  
    3941 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3942 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3943 coordinates: 
    3944 Matrix rotation and translation 
    3945 0.98568336 -0.16860693 -0.00013289 37.85560289 
    3946 0.16860693 0.98568337 -0.00001341 -31.90261986 
    3947 0.00013324 -0.00000919 0.99999999 16.11159476 
    3948 Axis 0.00001251 -0.00078921 0.99999969 
    3949 Axis point 206.71123667 206.96652048 0.00000000 
    3950 Rotation angle (degrees) 9.70683617 
    3951 Shift along axis 16.13724109 
    3952  
    3953 
    3954 > ui mousemode right "translate selected models"
    3955 
    3956 > view matrix models
    3957 > #6,0.82756,0.56137,-0.0030261,-80.393,-0.56138,0.82756,-0.0031069,152.99,0.00076015,0.0042699,0.99999,14.106
    3958 
    3959 > fitmap #6 inMap #2
    3960 
    3961 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3962 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    3963 correlation = 0.8911, correlation about mean = 0.6633, overlap = 1.717e+04 
    3964 steps = 56, shift = 1.74, angle = 0.00659 degrees 
    3965  
    3966 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3967 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3968 coordinates: 
    3969 Matrix rotation and translation 
    3970 0.98566747 -0.16869985 -0.00006703 37.86422456 
    3971 0.16869985 0.98566747 -0.00001090 -31.91919889 
    3972 0.00006791 -0.00000057 1.00000000 16.12937294 
    3973 Axis 0.00003063 -0.00039996 0.99999992 
    3974 Axis point 206.74499377 206.87955690 0.00000000 
    3975 Rotation angle (degrees) 9.71223511 
    3976 Shift along axis 16.14329768 
    3977  
    3978 
    3979 > fitmap #6 inMap #2
    3980 
    3981 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    3982 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    3983 correlation = 0.8911, correlation about mean = 0.6635, overlap = 1.719e+04 
    3984 steps = 36, shift = 0.0132, angle = 0.00325 degrees 
    3985  
    3986 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    3987 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    3988 coordinates: 
    3989 Matrix rotation and translation 
    3990 0.98566726 -0.16870110 -0.00002376 37.85476316 
    3991 0.16870110 0.98566725 -0.00004749 -31.91046120 
    3992 0.00003143 0.00004280 1.00000000 16.14107459 
    3993 Axis 0.00026761 -0.00016357 0.99999995 
    3994 Axis point 206.70796338 206.80213047 0.00000000 
    3995 Rotation angle (degrees) 9.71230735 
    3996 Shift along axis 16.15642386 
    3997  
    3998 
    3999 > fitmap #6 inMap #2
    4000 
    4001 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    4002 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    4003 correlation = 0.8911, correlation about mean = 0.6635, overlap = 1.719e+04 
    4004 steps = 40, shift = 0.00206, angle = 0.00727 degrees 
    4005  
    4006 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4007 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4008 coordinates: 
    4009 Matrix rotation and translation 
    4010 0.98566130 -0.16873583 -0.00010699 37.88110142 
    4011 0.16873584 0.98566131 0.00004163 -31.93641682 
    4012 0.00009843 -0.00005908 0.99999999 16.14937623 
    4013 Axis -0.00029843 -0.00060873 0.99999977 
    4014 Axis point 206.79688359 206.95500999 0.00000000 
    4015 Rotation angle (degrees) 9.71432821 
    4016 Shift along axis 16.15750817 
    4017  
    4018 
    4019 > fitmap #6 inMap #2
    4020 
    4021 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    4022 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    4023 correlation = 0.8911, correlation about mean = 0.6633, overlap = 1.717e+04 
    4024 steps = 40, shift = 0.0168, angle = 0.00736 degrees 
    4025  
    4026 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4027 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4028 coordinates: 
    4029 Matrix rotation and translation 
    4030 0.98567970 -0.16862836 -0.00004067 37.84074041 
    4031 0.16862836 0.98567970 0.00005567 -31.92055783 
    4032 0.00003069 -0.00006173 1.00000000 16.14713434 
    4033 Axis -0.00034812 -0.00021159 0.99999992 
    4034 Axis point 206.84300311 206.87093494 0.00000000 
    4035 Rotation angle (degrees) 9.70807929 
    4036 Shift along axis 16.14071400 
    4037  
    4038 
    4039 > fitmap #6 inMap #2
    4040 
    4041 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    4042 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    4043 correlation = 0.8911, correlation about mean = 0.6632, overlap = 1.716e+04 
    4044 steps = 40, shift = 0.0016, angle = 0.00425 degrees 
    4045  
    4046 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4047 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4048 coordinates: 
    4049 Matrix rotation and translation 
    4050 0.98568109 -0.16862025 -0.00007695 37.84652172 
    4051 0.16862025 0.98568109 -0.00000845 -31.90561670 
    4052 0.00007728 -0.00000465 1.00000000 16.12414351 
    4053 Axis 0.00001128 -0.00045734 0.99999990 
    4054 Axis point 206.74083418 206.89113791 0.00000000 
    4055 Rotation angle (degrees) 9.70760823 
    4056 Shift along axis 16.13916050 
    4057  
    4058 
    4059 > fitmap #6 inMap #2
    4060 
    4061 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    4062 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    4063 correlation = 0.8911, correlation about mean = 0.6635, overlap = 1.719e+04 
    4064 steps = 40, shift = 0.0178, angle = 0.005 degrees 
    4065  
    4066 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4067 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4068 coordinates: 
    4069 Matrix rotation and translation 
    4070 0.98566949 -0.16868803 -0.00002895 37.85259629 
    4071 0.16868803 0.98566949 -0.00003284 -31.91173854 
    4072 0.00003407 0.00002748 1.00000000 16.14426238 
    4073 Axis 0.00017879 -0.00018679 0.99999997 
    4074 Axis point 206.72767058 206.81488577 0.00000000 
    4075 Rotation angle (degrees) 9.71154729 
    4076 Shift along axis 16.15699007 
    4077  
    4078 
    4079 > fitmap #6 inMap #2
    4080 
    4081 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    4082 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    4083 correlation = 0.8911, correlation about mean = 0.6635, overlap = 1.719e+04 
    4084 steps = 36, shift = 0.000631, angle = 0.00411 degrees 
    4085  
    4086 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4087 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4088 coordinates: 
    4089 Matrix rotation and translation 
    4090 0.98566933 -0.16868896 -0.00001753 37.85102144 
    4091 0.16868896 0.98566933 -0.00010359 -31.89730879 
    4092 0.00003475 0.00009915 0.99999999 16.12901111 
    4093 Axis 0.00060093 -0.00015498 0.99999981 
    4094 Axis point 206.64052564 206.77118384 0.00000000 
    4095 Rotation angle (degrees) 9.71160297 
    4096 Shift along axis 16.15669714 
    4097  
    4098 
    4099 > fitmap #6 inMap #2
    4100 
    4101 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    4102 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    4103 correlation = 0.8911, correlation about mean = 0.6635, overlap = 1.719e+04 
    4104 steps = 36, shift = 0.00093, angle = 0.00808 degrees 
    4105  
    4106 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4107 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4108 coordinates: 
    4109 Matrix rotation and translation 
    4110 0.98565661 -0.16876326 -0.00001882 37.86899520 
    4111 0.16876326 0.98565661 0.00001556 -31.93546593 
    4112 0.00001593 -0.00001851 1.00000000 16.15685251 
    4113 Axis -0.00010093 -0.00010297 0.99999999 
    4114 Axis point 206.80074132 206.82464969 0.00000000 
    4115 Rotation angle (degrees) 9.71592052 
    4116 Shift along axis 16.15631849 
    4117  
    4118 
    4119 > fitmap #6 inMap #2
    4120 
    4121 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    4122 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    4123 correlation = 0.8911, correlation about mean = 0.6632, overlap = 1.716e+04 
    4124 steps = 36, shift = 0.0181, angle = 0.00747 degrees 
    4125  
    4126 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4127 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4128 coordinates: 
    4129 Matrix rotation and translation 
    4130 0.98567329 -0.16866582 0.00003595 37.83321838 
    4131 0.16866582 0.98567329 -0.00004931 -31.90402448 
    4132 -0.00002712 0.00005467 1.00000000 16.13260945 
    4133 Axis 0.00030824 0.00018699 0.99999994 
    4134 Axis point 206.73214622 206.71914135 0.00000000 
    4135 Rotation angle (degrees) 9.71025665 
    4136 Shift along axis 16.13830422 
    4137  
    4138 
    4139 > fitmap #6 inMap #2
    4140 
    4141 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    4142 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    4143 correlation = 0.8911, correlation about mean = 0.6633, overlap = 1.717e+04 
    4144 steps = 40, shift = 0.00368, angle = 0.00751 degrees 
    4145  
    4146 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4147 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4148 coordinates: 
    4149 Matrix rotation and translation 
    4150 0.98568506 -0.16859706 -0.00006855 37.83928676 
    4151 0.16859706 0.98568506 -0.00001207 -31.90104962 
    4152 0.00006961 0.00000034 1.00000000 16.12715960 
    4153 Axis 0.00003680 -0.00040973 0.99999992 
    4154 Axis point 206.74084974 206.87911064 0.00000000 
    4155 Rotation angle (degrees) 9.70625973 
    4156 Shift along axis 16.14162158 
    4157  
    4158 
    4159 > fitmap #6 inMap #2
    4160 
    4161 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    4162 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    4163 correlation = 0.8911, correlation about mean = 0.6633, overlap = 1.717e+04 
    4164 steps = 40, shift = 0.000884, angle = 0.00434 degrees 
    4165  
    4166 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4167 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4168 coordinates: 
    4169 Matrix rotation and translation 
    4170 0.98568095 -0.16862108 -0.00000780 37.83226830 
    4171 0.16862108 0.98568095 -0.00005031 -31.89691048 
    4172 0.00001618 0.00004827 1.00000000 16.12753648 
    4173 Axis 0.00029233 -0.00007110 0.99999995 
    4174 Axis point 206.71594887 206.78063753 0.00000000 
    4175 Rotation angle (degrees) 9.70765560 
    4176 Shift along axis 16.14086321 
    4177  
    4178 
    4179 > fitmap #6 inMap #2
    4180 
    4181 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    4182 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    4183 correlation = 0.8911, correlation about mean = 0.6636, overlap = 1.719e+04 
    4184 steps = 28, shift = 0.0216, angle = 0.00535 degrees 
    4185  
    4186 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4187 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4188 coordinates: 
    4189 Matrix rotation and translation 
    4190 0.98566541 -0.16871186 -0.00001120 37.85401595 
    4191 0.16871186 0.98566541 -0.00003569 -31.91455514 
    4192 0.00001706 0.00003329 1.00000000 16.15202323 
    4193 Axis 0.00020443 -0.00008376 0.99999998 
    4194 Axis point 206.72762258 206.78662594 0.00000000 
    4195 Rotation angle (degrees) 9.71293272 
    4196 Shift along axis 16.16243456 
    4197  
    4198 
    4199 > fitmap #6 inMap #2
    4200 
    4201 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    4202 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    4203 correlation = 0.8911, correlation about mean = 0.6632, overlap = 1.716e+04 
    4204 steps = 44, shift = 0.027, angle = 0.00657 degrees 
    4205  
    4206 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4207 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4208 coordinates: 
    4209 Matrix rotation and translation 
    4210 0.98567836 -0.16863620 -0.00003623 37.84108227 
    4211 0.16863620 0.98567836 0.00004585 -31.92050973 
    4212 0.00002798 -0.00005130 1.00000000 16.14033421 
    4213 Axis -0.00028805 -0.00019039 0.99999994 
    4214 Axis point 206.83555894 206.85656965 0.00000000 
    4215 Rotation angle (degrees) 9.70853493 
    4216 Shift along axis 16.13551051 
    4217  
    4218 
    4219 > fitmap #6 inMap #2
    4220 
    4221 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    4222 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    4223 correlation = 0.8911, correlation about mean = 0.6633, overlap = 1.717e+04 
    4224 steps = 40, shift = 0.00663, angle = 0.00554 degrees 
    4225  
    4226 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4227 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4228 coordinates: 
    4229 Matrix rotation and translation 
    4230 0.98567995 -0.16862691 -0.00010708 37.85447444 
    4231 0.16862690 0.98567995 -0.00001927 -31.90454459 
    4232 0.00010880 0.00000094 0.99999999 16.11930727 
    4233 Axis 0.00005993 -0.00064012 0.99999979 
    4234 Axis point 206.71320722 206.92642502 0.00000000 
    4235 Rotation angle (degrees) 9.70799602 
    4236 Shift along axis 16.14199533 
    4237  
    4238 
    4239 > fitmap #6 inMap #2
    4240 
    4241 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    4242 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    4243 correlation = 0.8911, correlation about mean = 0.6633, overlap = 1.716e+04 
    4244 steps = 40, shift = 0.00173, angle = 0.00547 degrees 
    4245  
    4246 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4247 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4248 coordinates: 
    4249 Matrix rotation and translation 
    4250 0.98568066 -0.16862277 -0.00002184 37.83557024 
    4251 0.16862276 0.98568066 -0.00006192 -31.89474447 
    4252 0.00003196 0.00005735 1.00000000 16.12184402 
    4253 Axis 0.00035366 -0.00015953 0.99999992 
    4254 Axis point 206.69404204 206.79378445 0.00000000 
    4255 Rotation angle (degrees) 9.70775406 
    4256 Shift along axis 16.14031163 
    4257  
    4258 
    4259 > fitmap #6 inMap #2
    4260 
    4261 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    4262 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    4263 correlation = 0.8911, correlation about mean = 0.6636, overlap = 1.719e+04 
    4264 steps = 28, shift = 0.0227, angle = 0.00419 degrees 
    4265  
    4266 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4267 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4268 coordinates: 
    4269 Matrix rotation and translation 
    4270 0.98567146 -0.16867650 -0.00003269 37.84920816 
    4271 0.16867650 0.98567146 -0.00001446 -31.91331699 
    4272 0.00003466 0.00000874 1.00000000 16.15396257 
    4273 Axis 0.00006877 -0.00019964 0.99999998 
    4274 Axis point 206.74794361 206.82016073 0.00000000 
    4275 Rotation angle (degrees) 9.71087728 
    4276 Shift along axis 16.16293612 
    4277  
    4278 
    4279 > fitmap #6 inMap #2
    4280 
    4281 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    4282 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    4283 correlation = 0.8911, correlation about mean = 0.6635, overlap = 1.718e+04 
    4284 steps = 40, shift = 0.00781, angle = 0.00568 degrees 
    4285  
    4286 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4287 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4288 coordinates: 
    4289 Matrix rotation and translation 
    4290 0.98565874 -0.16875085 0.00000695 37.86099707 
    4291 0.16875086 0.98565874 -0.00006499 -31.91655220 
    4292 0.00000412 0.00006523 1.00000000 16.14109781 
    4293 Axis 0.00038582 0.00000840 0.99999993 
    4294 Axis point 206.70613778 206.75650652 0.00000000 
    4295 Rotation angle (degrees) 9.71519981 
    4296 Shift along axis 16.15543583 
    4297  
    4298 
    4299 > fitmap #6 inMap #2
    4300 
    4301 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    4302 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    4303 correlation = 0.8911, correlation about mean = 0.6632, overlap = 1.716e+04 
    4304 steps = 40, shift = 0.0155, angle = 0.0089 degrees 
    4305  
    4306 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4307 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4308 coordinates: 
    4309 Matrix rotation and translation 
    4310 0.98567572 -0.16865160 -0.00009167 37.85765657 
    4311 0.16865160 0.98567573 0.00000033 -31.91325348 
    4312 0.00009030 -0.00001579 1.00000000 16.12455438 
    4313 Axis -0.00004778 -0.00053949 0.99999985 
    4314 Axis point 206.74860298 206.91711477 0.00000000 
    4315 Rotation angle (degrees) 9.70943114 
    4316 Shift along axis 16.13996027 
    4317  
    4318 
    4319 > fitmap #6 inMap #2
    4320 
    4321 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    4322 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    4323 correlation = 0.8911, correlation about mean = 0.6632, overlap = 1.716e+04 
    4324 steps = 44, shift = 0.0012, angle = 0.00357 degrees 
    4325  
    4326 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4327 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4328 coordinates: 
    4329 Matrix rotation and translation 
    4330 0.98568464 -0.16859949 -0.00007580 37.84118675 
    4331 0.16859949 0.98568464 0.00002942 -31.91001518 
    4332 0.00006976 -0.00004178 1.00000000 16.13317173 
    4333 Axis -0.00021113 -0.00043168 0.99999988 
    4334 Axis point 206.79176338 206.90629231 0.00000000 
    4335 Rotation angle (degrees) 9.70640163 
    4336 Shift along axis 16.13895515 
    4337  
    4338 
    4339 > fitmap #6 inMap #2
    4340 
    4341 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    4342 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    4343 correlation = 0.8911, correlation about mean = 0.6635, overlap = 1.718e+04 
    4344 steps = 40, shift = 0.0161, angle = 0.00686 degrees 
    4345  
    4346 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4347 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4348 coordinates: 
    4349 Matrix rotation and translation 
    4350 0.98566974 -0.16868658 -0.00002579 37.85173836 
    4351 0.16868658 0.98566974 -0.00003413 -31.91136183 
    4352 0.00003118 0.00002929 1.00000000 16.14253681 
    4353 Axis 0.00018801 -0.00016888 0.99999997 
    4354 Axis point 206.72829417 206.81094919 0.00000000 
    4355 Rotation angle (degrees) 9.71146292 
    4356 Shift along axis 16.15504197 
    4357  
    4358 
    4359 > fitmap #6 inMap #2
    4360 
    4361 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    4362 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    4363 correlation = 0.8911, correlation about mean = 0.6635, overlap = 1.719e+04 
    4364 steps = 40, shift = 0.00216, angle = 0.00607 degrees 
    4365  
    4366 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4367 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4368 coordinates: 
    4369 Matrix rotation and translation 
    4370 0.98566339 -0.16872365 -0.00007156 37.87051175 
    4371 0.16872366 0.98566339 0.00005372 -31.93684659 
    4372 0.00006147 -0.00006502 1.00000000 16.15767548 
    4373 Axis -0.00035188 -0.00039424 0.99999986 
    4374 Axis point 206.82870090 206.91215596 0.00000000 
    4375 Rotation angle (degrees) 9.71361942 
    4376 Shift along axis 16.15693824 
    4377  
    4378 
    4379 > fitmap #6 inMap #2
    4380 
    4381 Fit map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc in map
    4382 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 122022 points 
    4383 correlation = 0.8911, correlation about mean = 0.6635, overlap = 1.719e+04 
    4384 steps = 44, shift = 0.00462, angle = 0.0073 degrees 
    4385  
    4386 Position of 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4387 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4388 coordinates: 
    4389 Matrix rotation and translation 
    4390 0.98566125 -0.16873615 -0.00009829 37.87866939 
    4391 0.16873614 0.98566125 -0.00007023 -31.91301330 
    4392 0.00010873 0.00005264 0.99999999 16.12816750 
    4393 Axis 0.00036407 -0.00061345 0.99999975 
    4394 Axis point 206.65180067 206.88902230 0.00000000 
    4395 Rotation angle (degrees) 9.71434662 
    4396 Shift along axis 16.16153085 
    4397  
    4398 
    4399 > select clear
    4400 
    4401 > fitmap #1 inMap #2
    4402 
    4403 Fit map 301_02Fab_GT11_RM20A3_J329_map_sharp_3.2A.mrc in map
    4404 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 81884 points 
    4405 correlation = 0.9559, correlation about mean = 0.7508, overlap = 1.156e+04 
    4406 steps = 44, shift = 0.169, angle = 0.0542 degrees 
    4407  
    4408 Position of 301_02Fab_GT11_RM20A3_J329_map_sharp_3.2A.mrc (#1) relative to
    4409 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) coordinates: 
    4410 Matrix rotation and translation 
    4411 0.72103186 -0.69290190 0.00013317 200.97440412 
    4412 0.69289512 0.72102563 0.00428891 -86.22700884 
    4413 -0.00306781 -0.00300017 0.99999079 0.58171469 
    4414 Axis -0.00525976 0.00230980 0.99998350 
    4415 Axis point 207.57229413 206.47193768 0.00000000 
    4416 Rotation angle (degrees) 43.86090004 
    4417 Shift along axis -0.67453860 
    4418  
    4419 
    4420 > fitmap #1 inMap #2
    4421 
    4422 Fit map 301_02Fab_GT11_RM20A3_J329_map_sharp_3.2A.mrc in map
    4423 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc using 81884 points 
    4424 correlation = 0.9559, correlation about mean = 0.7509, overlap = 1.156e+04 
    4425 steps = 40, shift = 0.00167, angle = 0.0054 degrees 
    4426  
    4427 Position of 301_02Fab_GT11_RM20A3_J329_map_sharp_3.2A.mrc (#1) relative to
    4428 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) coordinates: 
    4429 Matrix rotation and translation 
    4430 0.72097263 -0.69296353 0.00009985 201.00732287 
    4431 0.69295692 0.72096637 0.00426718 -86.22411035 
    4432 -0.00302899 -0.00300733 0.99999089 0.57578312 
    4433 Axis -0.00524878 0.00225756 0.99998368 
    4434 Axis point 207.57196197 206.48348831 0.00000000 
    4435 Rotation angle (degrees) 43.86579446 
    4436 Shift along axis -0.67392489 
    4437  
    4438 
    4439 > show #!1 models
    4440 
    4441 > hide #!6 models
    4442 
    4443 > show #!6 models
    4444 
    4445 > volume #6 level 0.22
    4446 
    4447 > hide #!2 models
    4448 
    4449 > hide #!1 models
    4450 
    4451 > volume #6 level 0.23
    4452 
    4453 > ui tool show "Hide Dust"
    4454 
    4455 > surface dust #6 size 1.03
    4456 
    4457 > surface dust #6 size 1.19
    4458 
    4459 > surface dust #6 size 1.09
    4460 
    4461 > surface dust #6 size 11.89
    4462 
    4463 > show #!5 models
    4464 
    4465 > show #!4 models
    4466 
    4467 > hide #!4 models
    4468 
    4469 > hide #!6 models
    4470 
    4471 > surface dust #5 size 10.06
    4472 
    4473 > surface dust #5 size 11.14
    4474 
    4475 > show #!6 models
    4476 
    4477 > show #!4 models
    4478 
    4479 > show #!3 models
    4480 
    4481 > show #!2 models
    4482 
    4483 > surface dust #2 size 10.3
    4484 
    4485 > volume #2 level 0.215
    4486 
    4487 > volume #4 level 0.21
    4488 
    4489 > volume #3 level 0.225
    4490 
    4491 > volume #3 level 0.23
    4492 
    4493 > volume #3 level 0.3
    4494 
    4495 > volume #3 level 0.28
    4496 
    4497 > volume #3 level 0.27
    4498 
    4499 > volume #3 level 0.26
    4500 
    4501 > volume #3 level 0.25
    4502 
    4503 > volume #3 level 0.24
    4504 
    4505 > volume #3 level 0.2
    4506 
    4507 > volume #3 level 0.23
    4508 
    4509 > volume #3 level 0.24
    4510 
    4511 > volume #2 level 0.22
    4512 
    4513 > volume #2 level 0.23
    4514 
    4515 > open
    4516 > /Users/sphulera/Desktop/HVTN301/HVTN_301_06FAB_GT11_RM20A3_real_space_refined_017.pdb
    4517 
    4518 Chain information for HVTN_301_06FAB_GT11_RM20A3_real_space_refined_017.pdb #7 
    4519 --- 
    4520 Chain | Description 
    4521 A C E | No description available 
    4522 B D F | No description available 
    4523 G J O | No description available 
    4524 H K P | No description available 
    4525 I M Q | No description available 
    4526 L N R | No description available 
    4527  
    4528 
    4529 > open
    4530 > /Users/sphulera/Desktop/HVTN301/HVTN_301_02Fab_GT11_RM20A3_real_space_refined_057.pdb
    4531 
    4532 Chain information for HVTN_301_02Fab_GT11_RM20A3_real_space_refined_057.pdb #8 
    4533 --- 
    4534 Chain | Description 
    4535 A C E | No description available 
    4536 B D F | No description available 
    4537 G J | No description available 
    4538 H | No description available 
    4539 I M Q | No description available 
    4540 L | No description available 
    4541 O | No description available 
    4542  
    4543 
    4544 > hide #!2 models
    4545 
    4546 > hide #!3 models
    4547 
    4548 > hide #!4 models
    4549 
    4550 > hide #!5 models
    4551 
    4552 > hide #!6 models
    4553 
    4554 > hide #!7 models
    4555 
    4556 > show #!1 models
    4557 
    4558 > hide #!8 atoms
    4559 
    4560 > show #!8 cartoons
    4561 
    4562 > ui tool show Matchmaker
    4563 
    4564 > matchmaker #7/A to #8/A pairing ss
    4565 
    4566 Computing secondary structure 
    4567 [Repeated 2 time(s)]  Parameters 
    4568 --- 
    4569 Chain pairing | ss 
    4570 Alignment algorithm | Needleman-Wunsch 
    4571 Similarity matrix | BLOSUM-62 
    4572 SS fraction | 0.3 
    4573 Gap open (HH/SS/other) | 18/18/6 
    4574 Gap extend | 1 
    4575 SS matrix |  |  | H | S | O 
    4576 ---|---|---|--- 
    4577 H | 6 | -9 | -6 
    4578 S |  | 6 | -6 
    4579 O |  |  | 4 
    4580 Iteration cutoff | 2 
    4581  
    4582 Matchmaker HVTN_301_02Fab_GT11_RM20A3_real_space_refined_057.pdb, chain A (#8)
    4583 with HVTN_301_06FAB_GT11_RM20A3_real_space_refined_017.pdb, chain A (#7),
    4584 sequence alignment score = 2012.6 
    4585 RMSD between 431 pruned atom pairs is 0.439 angstroms; (across all 435 pairs:
    4586 0.544) 
    4587  
    4588 
    4589 > show #!7 models
    4590 
    4591 > hide atoms
    4592 
    4593 > show cartoons
    4594 
    4595 > show #!2 models
    4596 
    4597 > hide #!1 models
    4598 
    4599 > ui tool show "Fit in Map"
    4600 
    4601 > fitmap #7 inMap #2
    4602 
    4603 Fit molecule HVTN_301_06FAB_GT11_RM20A3_real_space_refined_017.pdb (#7) to map
    4604 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) using 24630 atoms 
    4605 average map value = 0.3163, steps = 64 
    4606 shifted from previous position = 0.455 
    4607 rotated from previous position = 0.934 degrees 
    4608 atoms outside contour = 9350, contour level = 0.23 
    4609  
    4610 Position of HVTN_301_06FAB_GT11_RM20A3_real_space_refined_017.pdb (#7)
    4611 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4612 coordinates: 
    4613 Matrix rotation and translation 
    4614 -0.50008013 0.86597914 -0.00005715 131.13515389 
    4615 -0.86597914 -0.50008013 -0.00000709 489.26461879 
    4616 -0.00003472 0.00004594 1.00000000 0.00490230 
    4617 Axis 0.00003062 -0.00001295 -1.00000000 
    4618 Axis point 206.79101716 206.78089547 0.00000000 
    4619 Rotation angle (degrees) 120.00530138 
    4620 Shift along axis -0.00722325 
    4621  
    4622 
    4623 > hide #!2 models
    4624 
    4625 > hide #!7 models
    4626 
    4627 > hide #!8 models
    4628 
    4629 > show #!8 models
    4630 
    4631 > show #!7 models
    4632 
    4633 > close #7
    4634 
    4635 > close #8
    4636 
    4637 > open
    4638 > /Users/sphulera/Desktop/HVTN301/HVTN_301_02Fab_GT11_RM20A3_real_space_refined_057.pdb
    4639 
    4640 Chain information for HVTN_301_02Fab_GT11_RM20A3_real_space_refined_057.pdb #7 
    4641 --- 
    4642 Chain | Description 
    4643 A C E | No description available 
    4644 B D F | No description available 
    4645 G J | No description available 
    4646 H | No description available 
    4647 I M Q | No description available 
    4648 L | No description available 
    4649 O | No description available 
    4650  
    4651 
    4652 > open
    4653 > /Users/sphulera/Desktop/HVTN301/HVTN_301_06FAB_GT11_RM20A3_real_space_refined_017.pdb
    4654 
    4655 Chain information for HVTN_301_06FAB_GT11_RM20A3_real_space_refined_017.pdb #8 
    4656 --- 
    4657 Chain | Description 
    4658 A C E | No description available 
    4659 B D F | No description available 
    4660 G J O | No description available 
    4661 H K P | No description available 
    4662 I M Q | No description available 
    4663 L N R | No description available 
    4664  
    4665 
    4666 > open
    4667 > /Users/sphulera/Desktop/HVTN301/HVTN301-Fab46_GT1.1_RM20A3_J311_real_space_refined_053.pdb
    4668 
    4669 Chain information for
    4670 HVTN301-Fab46_GT1.1_RM20A3_J311_real_space_refined_053.pdb #9 
    4671 --- 
    4672 Chain | Description 
    4673 A C E | No description available 
    4674 B D F | No description available 
    4675 G J O | No description available 
    4676 H K P | No description available 
    4677 I M Q | No description available 
    4678 L N R | No description available 
    4679  
    4680 
    4681 > open
    4682 > /Users/sphulera/Desktop/HVTN301/301-48_GT1.1_RM20A3_J336_2.98A_real_space_refined_056.pdb
    4683 
    4684 Chain information for
    4685 301-48_GT1.1_RM20A3_J336_2.98A_real_space_refined_056.pdb #10 
    4686 --- 
    4687 Chain | Description 
    4688 A C E | No description available 
    4689 B D F | No description available 
    4690 G J O | No description available 
    4691 H K P | No description available 
    4692 I M Q | No description available 
    4693 L N R | No description available 
    4694  
    4695 
    4696 > open
    4697 > /Users/sphulera/Desktop/HVTN301/Fab56_426cSM_SOSIP_RM20A3_J1469_real_space_refined_041.pdb
    4698 
    4699 Chain information for
    4700 Fab56_426cSM_SOSIP_RM20A3_J1469_real_space_refined_041.pdb #11 
    4701 --- 
    4702 Chain | Description 
    4703 A B C | No description available 
    4704 G J O | No description available 
    4705 H K P | No description available 
    4706 I M Q | No description available 
    4707 L N R | No description available 
    4708  
    4709 
    4710 > open
    4711 > /Users/sphulera/Desktop/HVTN301/HVTN301_Fab61_426cSM_SOSIP_RM20A3_real_space_refined_022.pdb
    4712 
    4713 Chain information for
    4714 HVTN301_Fab61_426cSM_SOSIP_RM20A3_real_space_refined_022.pdb #12 
    4715 --- 
    4716 Chain | Description 
    4717 A B C | No description available 
    4718 G J O | No description available 
    4719 H K P | No description available 
    4720 I M Q | No description available 
    4721 L N R | No description available 
    4722  
    4723 
    4724 > ui tool show Matchmaker
    4725 
    4726 > matchmaker #8/A to #7/A pairing ss
    4727 
    4728 Computing secondary structure 
    4729 [Repeated 2 time(s)]  Parameters 
    4730 --- 
    4731 Chain pairing | ss 
    4732 Alignment algorithm | Needleman-Wunsch 
    4733 Similarity matrix | BLOSUM-62 
    4734 SS fraction | 0.3 
    4735 Gap open (HH/SS/other) | 18/18/6 
    4736 Gap extend | 1 
    4737 SS matrix |  |  | H | S | O 
    4738 ---|---|---|--- 
    4739 H | 6 | -9 | -6 
    4740 S |  | 6 | -6 
    4741 O |  |  | 4 
    4742 Iteration cutoff | 2 
    4743  
    4744 Matchmaker HVTN_301_02Fab_GT11_RM20A3_real_space_refined_057.pdb, chain A (#7)
    4745 with HVTN_301_06FAB_GT11_RM20A3_real_space_refined_017.pdb, chain A (#8),
    4746 sequence alignment score = 2012.6 
    4747 RMSD between 431 pruned atom pairs is 0.439 angstroms; (across all 435 pairs:
    4748 0.544) 
    4749  
    4750 
    4751 > matchmaker #9/A to #7/A pairing ss
    4752 
    4753 Computing secondary structure 
    4754 [Repeated 1 time(s)]  Parameters 
    4755 --- 
    4756 Chain pairing | ss 
    4757 Alignment algorithm | Needleman-Wunsch 
    4758 Similarity matrix | BLOSUM-62 
    4759 SS fraction | 0.3 
    4760 Gap open (HH/SS/other) | 18/18/6 
    4761 Gap extend | 1 
    4762 SS matrix |  |  | H | S | O 
    4763 ---|---|---|--- 
    4764 H | 6 | -9 | -6 
    4765 S |  | 6 | -6 
    4766 O |  |  | 4 
    4767 Iteration cutoff | 2 
    4768  
    4769 Matchmaker HVTN_301_02Fab_GT11_RM20A3_real_space_refined_057.pdb, chain A (#7)
    4770 with HVTN301-Fab46_GT1.1_RM20A3_J311_real_space_refined_053.pdb, chain A (#9),
    4771 sequence alignment score = 2078.2 
    4772 RMSD between 428 pruned atom pairs is 0.844 angstroms; (across all 435 pairs:
    4773 0.928) 
    4774  
    4775 
    4776 > matchmaker #10/A to #7/A pairing ss
    4777 
    4778 Computing secondary structure 
    4779 [Repeated 1 time(s)]  Parameters 
    4780 --- 
    4781 Chain pairing | ss 
    4782 Alignment algorithm | Needleman-Wunsch 
    4783 Similarity matrix | BLOSUM-62 
    4784 SS fraction | 0.3 
    4785 Gap open (HH/SS/other) | 18/18/6 
    4786 Gap extend | 1 
    4787 SS matrix |  |  | H | S | O 
    4788 ---|---|---|--- 
    4789 H | 6 | -9 | -6 
    4790 S |  | 6 | -6 
    4791 O |  |  | 4 
    4792 Iteration cutoff | 2 
    4793  
    4794 Matchmaker HVTN_301_02Fab_GT11_RM20A3_real_space_refined_057.pdb, chain A (#7)
    4795 with 301-48_GT1.1_RM20A3_J336_2.98A_real_space_refined_056.pdb, chain A (#10),
    4796 sequence alignment score = 2019.4 
    4797 RMSD between 428 pruned atom pairs is 0.840 angstroms; (across all 435 pairs:
    4798 0.941) 
    4799  
    4800 
    4801 > matchmaker #11/A to #7/A pairing ss
    4802 
    4803 Computing secondary structure 
    4804 [Repeated 1 time(s)]  Parameters 
    4805 --- 
    4806 Chain pairing | ss 
    4807 Alignment algorithm | Needleman-Wunsch 
    4808 Similarity matrix | BLOSUM-62 
    4809 SS fraction | 0.3 
    4810 Gap open (HH/SS/other) | 18/18/6 
    4811 Gap extend | 1 
    4812 SS matrix |  |  | H | S | O 
    4813 ---|---|---|--- 
    4814 H | 6 | -9 | -6 
    4815 S |  | 6 | -6 
    4816 O |  |  | 4 
    4817 Iteration cutoff | 2 
    4818  
    4819 Matchmaker HVTN_301_02Fab_GT11_RM20A3_real_space_refined_057.pdb, chain A (#7)
    4820 with Fab56_426cSM_SOSIP_RM20A3_J1469_real_space_refined_041.pdb, chain A
    4821 (#11), sequence alignment score = 1612.7 
    4822 RMSD between 401 pruned atom pairs is 0.667 angstroms; (across all 425 pairs:
    4823 1.931) 
    4824  
    4825 
    4826 > matchmaker #12/A to #7/A pairing ss
    4827 
    4828 Computing secondary structure 
    4829 [Repeated 1 time(s)]  Parameters 
    4830 --- 
    4831 Chain pairing | ss 
    4832 Alignment algorithm | Needleman-Wunsch 
    4833 Similarity matrix | BLOSUM-62 
    4834 SS fraction | 0.3 
    4835 Gap open (HH/SS/other) | 18/18/6 
    4836 Gap extend | 1 
    4837 SS matrix |  |  | H | S | O 
    4838 ---|---|---|--- 
    4839 H | 6 | -9 | -6 
    4840 S |  | 6 | -6 
    4841 O |  |  | 4 
    4842 Iteration cutoff | 2 
    4843  
    4844 Matchmaker HVTN_301_02Fab_GT11_RM20A3_real_space_refined_057.pdb, chain A (#7)
    4845 with HVTN301_Fab61_426cSM_SOSIP_RM20A3_real_space_refined_022.pdb, chain A
    4846 (#12), sequence alignment score = 1658.4 
    4847 RMSD between 404 pruned atom pairs is 0.659 angstroms; (across all 426 pairs:
    4848 1.919) 
    4849  
    4850 
    4851 > hide atoms
    4852 
    4853 > show cartoons
    4854 
    4855 > fitmap #7 inMap #1
    4856 
    4857 Fit molecule HVTN_301_02Fab_GT11_RM20A3_real_space_refined_057.pdb (#7) to map
    4858 301_02Fab_GT11_RM20A3_J329_map_sharp_3.2A.mrc (#1) using 21175 atoms 
    4859 average map value = 0.328, steps = 48 
    4860 shifted from previous position = 0.16 
    4861 rotated from previous position = 0.0159 degrees 
    4862 atoms outside contour = 7309, contour level = 0.22025 
    4863  
    4864 Position of HVTN_301_02Fab_GT11_RM20A3_real_space_refined_057.pdb (#7)
    4865 relative to 301_02Fab_GT11_RM20A3_J329_map_sharp_3.2A.mrc (#1) coordinates: 
    4866 Matrix rotation and translation 
    4867 0.99999999 -0.00012322 0.00000413 0.02497425 
    4868 0.00012322 0.99999998 0.00016788 -0.06184555 
    4869 -0.00000415 -0.00016788 0.99999999 0.04538289 
    4870 Axis -0.80599512 0.01988776 0.59158799 
    4871 Axis point 0.00000000 250.95544164 369.07177288 
    4872 Rotation angle (degrees) 0.01193414 
    4873 Shift along axis 0.00548889 
    4874  
    4875 
    4876 > fitmap #8 inMap #2
    4877 
    4878 Fit molecule HVTN_301_06FAB_GT11_RM20A3_real_space_refined_017.pdb (#8) to map
    4879 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2) using 24630 atoms 
    4880 average map value = 0.3163, steps = 64 
    4881 shifted from previous position = 0.455 
    4882 rotated from previous position = 0.934 degrees 
    4883 atoms outside contour = 9350, contour level = 0.23 
    4884  
    4885 Position of HVTN_301_06FAB_GT11_RM20A3_real_space_refined_017.pdb (#8)
    4886 relative to 301_06FAB_GT11_RM20A3_J333_C3_map_sharp_3.14A.mrc (#2)
    4887 coordinates: 
    4888 Matrix rotation and translation 
    4889 -0.50008013 0.86597914 -0.00005715 131.13515389 
    4890 -0.86597914 -0.50008013 -0.00000709 489.26461879 
    4891 -0.00003472 0.00004594 1.00000000 0.00490230 
    4892 Axis 0.00003062 -0.00001295 -1.00000000 
    4893 Axis point 206.79101716 206.78089547 0.00000000 
    4894 Rotation angle (degrees) 120.00530138 
    4895 Shift along axis -0.00722325 
    4896  
    4897 
    4898 > fitmap #9 inMap #3
    4899 
    4900 Fit molecule HVTN301-Fab46_GT1.1_RM20A3_J311_real_space_refined_053.pdb (#9)
    4901 to map 301_46FAB_GT1-1_RM20A3_J311_C3_map_sharp_2.96A.mrc (#3) using 24915
    4902 atoms 
    4903 average map value = 0.3901, steps = 64 
    4904 shifted from previous position = 1.15 
    4905 rotated from previous position = 0.235 degrees 
    4906 atoms outside contour = 8383, contour level = 0.24 
    4907  
    4908 Position of HVTN301-Fab46_GT1.1_RM20A3_J311_real_space_refined_053.pdb (#9)
    4909 relative to 301_46FAB_GT1-1_RM20A3_J311_C3_map_sharp_2.96A.mrc (#3)
    4910 coordinates: 
    4911 Matrix rotation and translation 
    4912 1.00000000 -0.00009082 0.00007818 0.00363312 
    4913 0.00009082 1.00000000 -0.00001211 -0.01637068 
    4914 -0.00007817 0.00001212 1.00000000 0.00198446 
    4915 Axis 0.10057753 0.64905975 0.75405941 
    4916 Axis point 117.62248016 49.69898308 0.00000000 
    4917 Rotation angle (degrees) 0.00690090 
    4918 Shift along axis -0.00876374 
    4919  
    4920 
    4921 > fitmap #10 inMap #4
    4922 
    4923 Fit molecule 301-48_GT1.1_RM20A3_J336_2.98A_real_space_refined_056.pdb (#10)
    4924 to map 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc (#4) using 24891
    4925 atoms 
    4926 average map value = 0.3666, steps = 60 
    4927 shifted from previous position = 1.33 
    4928 rotated from previous position = 0.642 degrees 
    4929 atoms outside contour = 8653, contour level = 0.21 
    4930  
    4931 Position of 301-48_GT1.1_RM20A3_J336_2.98A_real_space_refined_056.pdb (#10)
    4932 relative to 301_48FAB_GT1-1_RM20A3_J336_C3_map_sharp_2.98A.mrc (#4)
    4933 coordinates: 
    4934 Matrix rotation and translation 
    4935 -0.50004595 -0.86599887 -0.00001414 489.26189567 
    4936 0.86599887 -0.50004595 -0.00006797 131.11856690 
    4937 0.00005179 -0.00004623 1.00000000 0.00312397 
    4938 Axis 0.00001255 -0.00003806 1.00000000 
    4939 Axis point 206.78259690 206.78837355 0.00000000 
    4940 Rotation angle (degrees) 120.00304024 
    4941 Shift along axis 0.00427241 
    4942  
    4943 
    4944 > fitmap #11 inMap #5
    4945 
    4946 Fit molecule Fab56_426cSM_SOSIP_RM20A3_J1469_real_space_refined_041.pdb (#11)
    4947 to map 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5) using
    4948 25338 atoms 
    4949 average map value = 0.3637, steps = 68 
    4950 shifted from previous position = 0.575 
    4951 rotated from previous position = 1.2 degrees 
    4952 atoms outside contour = 9002, contour level = 0.215 
    4953  
    4954 Position of Fab56_426cSM_SOSIP_RM20A3_J1469_real_space_refined_041.pdb (#11)
    4955 relative to 301_56Fab_426cSM_SOSIP_RM20A3_J1469_map_sharp_2.88A.mrc (#5)
    4956 coordinates: 
    4957 Matrix rotation and translation 
    4958 -0.50052935 -0.86571955 -0.00017888 489.33482243 
    4959 0.86571956 -0.50052936 -0.00002348 131.27367785 
    4960 -0.00006921 -0.00016661 0.99999998 0.02743216 
    4961 Axis -0.00008267 -0.00006334 0.99999999 
    4962 Axis point 206.79871317 206.79593289 0.00000000 
    4963 Rotation angle (degrees) 120.03502855 
    4964 Shift along axis -0.02133606 
    4965  
    4966 
    4967 > fitmap #12 inMap #6
    4968 
    4969 Fit molecule HVTN301_Fab61_426cSM_SOSIP_RM20A3_real_space_refined_022.pdb
    4970 (#12) to map 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4971 using 24858 atoms 
    4972 average map value = 0.4451, steps = 60 
    4973 shifted from previous position = 0.565 
    4974 rotated from previous position = 1.05 degrees 
    4975 atoms outside contour = 6813, contour level = 0.23 
    4976  
    4977 Position of HVTN301_Fab61_426cSM_SOSIP_RM20A3_real_space_refined_022.pdb (#12)
    4978 relative to 301_61FAB_426cSM_SOSIP_RM20A3_J1468_map_sharp_2.87A.mrc (#6)
    4979 coordinates: 
    4980 Matrix rotation and translation 
    4981 0.99999990 0.00043759 -0.00010531 -0.07272947 
    4982 -0.00043759 0.99999990 -0.00000193 0.08827310 
    4983 0.00010531 0.00000198 0.99999999 -0.02819426 
    4984 Axis 0.00434569 -0.23398215 -0.97223118 
    4985 Axis point 205.13135167 166.31459964 0.00000000 
    4986 Rotation angle (degrees) 0.02578840 
    4987 Shift along axis 0.00644095 
    4988  
    4989 
    4990 > show #!1 models
    4991 
    4992 > show #!2 models
    4993 
    4994 > show #!3 models
    4995 
    4996 > show #!4 models
    4997 
    4998 > show #!5 models
    4999 
    5000 > show #!6 models
    5001 
    5002 > hide #!2 models
    5003 
    5004 > hide #!3 models
    5005 
    5006 > hide #!4 models
    5007 
    5008 > hide #!5 models
    5009 
    5010 > hide #!6 models
    5011 
    5012 > hide #!7 models
    5013 
    5014 > show #!7 models
    5015 
    5016 > hide #!8 models
    5017 
    5018 > hide #!9 models
    5019 
    5020 > hide #!10 models
    5021 
    5022 > hide #!11 models
    5023 
    5024 > hide #!12 models
    5025 
    5026 > ui tool show "Volume Viewer"
    5027 
    5028 > volume #1 level 0.2
    5029 
    5030 > volume #1 level 0.15
    5031 
    5032 > volume #1 level 0.16
    5033 
    5034 > volume #1 level 0.17
    5035 
    5036 > volume #1 level 0.16
    5037 
    5038 > show #!7 atoms
    5039 
    5040 > style #!7 stick
    5041 
    5042 Changed 21175 atom styles 
    5043 
    5044 > hide #!1 models
    5045 
    5046 > show #!1 models
    5047 
    5048 > ui tool show "Color Zone"
    5049 
    5050 > color zone #1 near #7 distance 6.2
    5051 
    5052 > color zone #1 near #7 distance 3
    5053 
    5054 [Repeated 2 time(s)]
    5055 
    5056 > hide #!7 models
    5057 
    5058 > save /Users/sphulera/Desktop/HVTN301/Map_session.cxs
    5059 
    5060 ——— End of log from Tue Apr 22 15:50:50 2025 ———
    5061 
    5062 opened ChimeraX session 
    5063 
    5064 > hide #!1 models
    5065 
    5066 > show #!1 models
    5067 
    5068 > hide #!1 models
    5069 
    5070 > show #!1 models
    5071 
    5072 > show #!2 models
    5073 
    5074 > hide #!2 models
    5075 
    5076 > show #!7 models
    5077 
    5078 > hide #!1 models
    5079 
    5080 > hide #!7 atoms
    5081 
    5082 > select :NAG, NAM, BMA
    5083 
    5084 7188 atoms, 7398 bonds, 525 residues, 6 models selected 
    5085 
    5086 > color (#!7 & sel) blue
    5087 
    5088 > show sel & #!7 atoms
    5089 
    5090 > history
    5091 
    5092 Unknown command: history 
    5093 
    5094 > color (:NAG, NAM, BMA) blue
    5095 
    5096 > color (:NAG, NAM, BMA) red
    5097 
    5098 > color (:NAG, NAM, BMA) blue
    5099 
    5100 > show #!8 models
    5101 
    5102 > hide #!7 models
    5103 
    5104 > show #!7 models
    5105 
    5106 > hide #!7 models
    5107 
    5108 > show #!7 models
    5109 
    5110 > hide #!7 models
    5111 
    5112 > show #!7 models
    5113 
    5114 > hide #!7 models
    5115 
    5116 > show #!7 models
    5117 
    5118 > hide #!7 models
    5119 
    5120 > show #!7 models
    5121 
    5122 > hide #!7 models
    5123 
    5124 > show #!7 models
    5125 
    5126 > hide #!8 models
    5127 
    5128 > hide sel & #!7 atoms
    5129 
    5130 > color sel & #!7 bychain
    5131 
    5132 > select clear
    5133 
    5134 > select add #7
    5135 
    5136 21175 atoms, 21715 bonds, 9 pseudobonds, 2672 residues, 2 models selected 
    5137 
    5138 > color sel bychain
    5139 
    5140 > select clear
    5141 
    5142 > color (:1 /A,B,C,D,E,F) red
    5143 
    5144 > color (:1 /A,B,C,D,E,F) GRAY
    5145 
    5146 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
    5147 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
    5148 'fromcartoons', 'fromribbons', or 'random' or a keyword 
    5149 
    5150 > color (:1 /A,B,C,D,E,F) gray
    5151 
    5152 > show #!1 models
    5153 
    5154 > ui tool show "Surface Zone"
    5155 
    5156 > surface zone #1 nearAtoms #7 distance 6.2
    5157 
    5158 > ui tool show "Hide Dust"
    5159 
    5160 > surface dust #1 size 6.2
    5161 
    5162 > surface dust #1 size 6.33
    5163 
    5164 > surface dust #1 size 15.68
    5165 
    5166 > surface zone #1 nearAtoms #7 distance 6.2
    5167 
    5168 > surface zone #1 nearAtoms #7 distance 3.27
    5169 
    5170 > surface dust #1 size 4.06
    5171 
    5172 > surface dust #1 size 4.03
    5173 
    5174 > surface dust #1 size 2.33
    5175 
    5176 > surface zone #1 nearAtoms #7 distance 3.27
    5177 
    5178 > ui tool show "Color Zone"
    5179 
    5180 > color zone #1 near #7 distance 1.03
    5181 
    5182 > color zone #1 near #7 distance 3.17
    5183 
    5184 > color zone #1 near #7 distance 3
    5185 
    5186 > hide #!1 models
    5187 
    5188 > show #!1 models
    5189 
    5190 > hide #!7 models
    5191 
    5192 > volume #1 level 0.16
    5193 
    5194 > volume #1 level 0.2137
    5195 
    5196 > surface dust #1 size 2.33
    5197 
    5198 > volume #1 level 0.1757
    5199 
    5200 > color (:NAG, NAM, BMA) blue
    5201 
    5202 > color zone #1 near #7 distance 3
    5203 
    5204 > color zone #1 near #7 distance 3.06
    5205 
    5206 > color zone #1 near #7 distance 3.72
    5207 
    5208 > color zone #1 near #7 distance 3.86
    5209 
    5210 > color zone #1 near #7 distance 5.05
    5211 
    5212 > color zone #1 near #7 distance 5.1
    5213 
    5214 > color zone #1 near #7 distance 5
    5215 
    5216 > surface dust #1 size 2.33
    5217 
    5218 > surface dust #1 size 2.41
    5219 
    5220 > surface dust #1 size 4.57
    5221 
    5222 > surface dust #1 size 7
    5223 
    5224 > color (:1 /A,B,C,D,E,F) lightgray
    5225 
    5226 > color zone #1 near #7 distance 5
    5227 
    5228 > color (:1 /A,B,C,D,E,F) darkgray
    5229 
    5230 > color zone #1 near #7 distance 5
    5231 
    5232 > hide #!1 models
    5233 
    5234 > show #!7 models
    5235 
    5236 > color (:1 /G,I,O,Q,M,J) gray
    5237 
    5238 > color zone #1 near #7 distance 5
    5239 
    5240 > show #!1 models
    5241 
    5242 > color (:1 /G,I,O,Q,M,J) darkslategray
    5243 
    5244 > color zone #1 near #7 distance 5
    5245 
    5246 > color (:1 /G,I,O,Q,M,J) slategray
    5247 
    5248 > color zone #1 near #7 distance 5
    5249 
    5250 > color (:NAG, NAM, BMA) blue
    5251 
    5252 > color zone #1 near #7 distance 5
    5253 
    5254 > select #1/L
    5255 
    5256 Nothing selected 
    5257 
    5258 > select #1 /L
    5259 
    5260 Nothing selected 
    5261 
    5262 > select #7 /L
    5263 
    5264 762 atoms, 780 bonds, 101 residues, 1 model selected 
    5265 
    5266 > ui tool show "Color Actions"
    5267 
    5268 > color sel #fcfffdff
    5269 
    5270 > color sel #fcfffcff
    5271 
    5272 > color sel #fefffbff
    5273 
    5274 > color sel #fffef8ff
    5275 
    5276 > color sel #fff9f0ff
    5277 
    5278 > color sel #fff7edff
    5279 
    5280 > color sel #fff5e8ff
    5281 
    5282 > color sel #fff2e3ff
    5283 
    5284 > color sel #fff1e0ff
    5285 
    5286 > color sel #ffefdeff
    5287 
    5288 > color sel #ffeedbff
    5289 
    5290 > color sel #ffeedaff
    5291 
    5292 > color sel #ffeed9ff
    5293 
    5294 > color sel #ffedd7ff
    5295 
    5296 > color sel #ffecd6ff
    5297 
    5298 > color sel #ffebd3ff
    5299 
    5300 > color sel #ffebd0ff
    5301 
    5302 > color sel #ffe9ccff
    5303 
    5304 > color sel #ffe8c7ff
    5305 
    5306 > color sel #ffe8c3ff
    5307 
    5308 > color sel #ffe6beff
    5309 
    5310 > color sel #ffe6bcff
    5311 
    5312 > color sel #ffe6bbff
    5313 
    5314 > color sel #ffe6baff
    5315 
    5316 > color sel #ffe6b9ff
    5317 
    5318 > color sel #ffe5b9ff
    5319 
    5320 > color sel #ffd6b7ff
    5321 
    5322 > color sel #ffbcb1ff
    5323 
    5324 > color sel #ffaaabff
    5325 
    5326 > color sel #ff9daeff
    5327 
    5328 > color sel #ff92afff
    5329 
    5330 > color sel #ff8ab1ff
    5331 
    5332 > color sel #ff7db5ff
    5333 
    5334 > color sel #ff7ab7ff
    5335 
    5336 > color sel #ff74bbff
    5337 
    5338 > color sel #ff67c3ff
    5339 
    5340 > color sel #ff64c6ff
    5341 
    5342 > color sel #ff62c8ff
    5343 
    5344 > color sel #ff5ecbff
    5345 
    5346 > color sel #ff5cceff
    5347 
    5348 > color sel #ff5acfff
    5349 
    5350 > color sel #ff59d1ff
    5351 
    5352 > color sel #ff57d3ff
    5353 
    5354 > color sel #ff53d8ff
    5355 
    5356 > color sel #ff52daff
    5357 
    5358 > color sel #ff51dcff
    5359 
    5360 > color sel #ff4de1ff
    5361 
    5362 > color sel #ff4ce2ff
    5363 
    5364 > color sel #ff49e4ff
    5365 
    5366 > color sel #ff48e7ff
    5367 
    5368 > color sel #ff45e9ff
    5369 
    5370 > color sel #ff44ebff
    5371 
    5372 > color sel #ff43ecff
    5373 
    5374 > color sel #ff42edff
    5375 
    5376 > color sel #ff3ff0ff
    5377 
    5378 > color sel #ff3ef1ff
    5379 
    5380 > color sel #ff3df2ff
    5381 
    5382 > color sel #ff3df3ff
    5383 
    5384 > color sel #ff3bf6ff
    5385 
    5386 > color sel #ff3af7ff
    5387 
    5388 > color sel #ff3af8ff
    5389 
    5390 > color sel #ff3afbff
    5391 
    5392 > color sel #ff3cfeff
    5393 
    5394 > color sel #fb3dffff
    5395 
    5396 > color sel #f33fffff
    5397 
    5398 > color sel #ee40ffff
    5399 
    5400 > color sel #ed41ffff
    5401 
    5402 > color sel #e942ffff
    5403 
    5404 > color sel #e743ffff
    5405 
    5406 > color sel #e444ffff
    5407 
    5408 > color sel #d648ffff
    5409 
    5410 > color sel #d249ffff
    5411 
    5412 > color sel #d04affff
    5413 
    5414 > color sel #c94bffff
    5415 
    5416 > color sel #c74bffff
    5417 
    5418 > color sel #c34cffff
    5419 
    5420 > color sel #bb4dffff
    5421 
    5422 > color sel #b650ffff
    5423 
    5424 > color sel #b451ffff
    5425 
    5426 > color sel #a85affff
    5427 
    5428 > color sel #a35fffff
    5429 
    5430 > color sel #a061ffff
    5431 
    5432 > color sel #9d63ffff
    5433 
    5434 > color sel #9967ffff
    5435 
    5436 > color sel #9769ffff
    5437 
    5438 > color sel #9370ffff
    5439 
    5440 > color sel #9173ffff
    5441 
    5442 > color sel #8f75ffff
    5443 
    5444 > color sel #8b81ffff
    5445 
    5446 > color sel #8a88ffff
    5447 
    5448 > color sel #8a89ffff
    5449 
    5450 > color sel #95a0ffff
    5451 
    5452 > color sel #9aa8ffff
    5453 
    5454 > color sel #9eb0ffff
    5455 
    5456 > color sel #b0d3ffff
    5457 
    5458 > color sel #b4dbffff
    5459 
    5460 > color sel #b5deffff
    5461 
    5462 > color sel #b8e7ffff
    5463 
    5464 > color sel #baecffff
    5465 
    5466 > color sel #bbf0ffff
    5467 
    5468 > color sel #bcf5ffff
    5469 
    5470 > color sel #bcf8ffff
    5471 
    5472 > color sel #bdfbffff
    5473 
    5474 > color sel #beffffff
    5475 
    5476 > color sel #befffdff
    5477 
    5478 > color sel #befffbff
    5479 
    5480 > color sel #befff8ff
    5481 
    5482 > color sel #bffff6ff
    5483 
    5484 > color sel #bffff4ff
    5485 
    5486 > color sel #c0fff0ff
    5487 
    5488 > color sel #c0ffeeff
    5489 
    5490 > color sel #c1ffeeff
    5491 
    5492 > color sel #c1ffebff
    5493 
    5494 > color sel #c1ffe9ff
    5495 
    5496 > color sel #c2ffe7ff
    5497 
    5498 > color sel #c3ffdfff
    5499 
    5500 > color sel #c4ffd7ff
    5501 
    5502 > color sel #c4ffd1ff
    5503 
    5504 > color sel #c5ffc7ff
    5505 
    5506 > color sel #c9ffc5ff
    5507 
    5508 > color sel #cdffc5ff
    5509 
    5510 > color sel #cfffc4ff
    5511 
    5512 > color sel #d6ffc4ff
    5513 
    5514 > color sel #d9ffc3ff
    5515 
    5516 > color sel #ddffc3ff
    5517 
    5518 > color sel #e0ffc2ff
    5519 
    5520 > color sel #e3ffc2ff
    5521 
    5522 > color sel #eaffc0ff
    5523 
    5524 > color sel #efffbdff
    5525 
    5526 > color sel #f3ffbaff
    5527 
    5528 > color sel #f7ffb8ff
    5529 
    5530 > color sel #f9ffb7ff
    5531 
    5532 > color sel #faffb7ff
    5533 
    5534 > color sel #feffb4ff
    5535 
    5536 > color sel #fffeb3ff
    5537 
    5538 > color sel #fffdb3ff
    5539 
    5540 > color sel #fffcb2ff
    5541 
    5542 > color sel #fff8b1ff
    5543 
    5544 > color sel #fff5b1ff
    5545 
    5546 > color sel #ffecb0ff
    5547 
    5548 > color sel #ffe8afff
    5549 
    5550 > color sel #ffe5afff
    5551 
    5552 > color sel #ffe1aeff
    5553 
    5554 > color sel #ffdbabff
    5555 
    5556 > color sel #ffd6aaff
    5557 
    5558 > color sel #ffcea7ff
    5559 
    5560 > color sel #ffc8a5ff
    5561 
    5562 > color sel #ffc3a4ff
    5563 
    5564 > color sel #ffb8a0ff
    5565 
    5566 > color sel #ffb09dff
    5567 
    5568 > color sel #ffa599ff
    5569 
    5570 > color sel #ff9a95ff
    5571 
    5572 > color sel #ff9296ff
    5573 
    5574 > color sel #ff8e9bff
    5575 
    5576 > color sel #ff8aa6ff
    5577 
    5578 > color sel #ff86b0ff
    5579 
    5580 > color sel #ff82b7ff
    5581 
    5582 > color sel #ff81bfff
    5583 
    5584 > color sel #ff80d0ff
    5585 
    5586 > color sel #ff81daff
    5587 
    5588 > color sel #ff84e3ff
    5589 
    5590 > color sel #a4a4ffff
    5591 
    5592 > color sel #97c5ffff
    5593 
    5594 > color sel #87daffff
    5595 
    5596 > color sel #71ffffff
    5597 
    5598 > color sel #6affecff
    5599 
    5600 > color sel #66ffddff
    5601 
    5602 > color sel #63ffceff
    5603 
    5604 > color sel #64ffb6ff
    5605 
    5606 > color sel #65ffa7ff
    5607 
    5608 > color sel #69ff94ff
    5609 
    5610 > color sel #6fff82ff
    5611 
    5612 > color sel #75ff73ff
    5613 
    5614 > color sel #85ff76ff
    5615 
    5616 > color sel #94ff77ff
    5617 
    5618 > color sel #9dff78ff
    5619 
    5620 > color sel #b5ff7aff
    5621 
    5622 > color sel #c1ff7bff
    5623 
    5624 > color sel #d1ff79ff
    5625 
    5626 > color sel #e1ff77ff
    5627 
    5628 > color sel #eeff76ff
    5629 
    5630 > color sel #ffff75ff
    5631 
    5632 > color sel #fff676ff
    5633 
    5634 > color sel #fff078ff
    5635 
    5636 > color sel #ffd187ff
    5637 
    5638 > color sel #ffc18dff
    5639 
    5640 > color sel #ffba91ff
    5641 
    5642 > color sel #ffa797ff
    5643 
    5644 > color sel #ff989cff
    5645 
    5646 > color sel #ff98a4ff
    5647 
    5648 > color sel #ff99c9ff
    5649 
    5650 > color sel #ff97d4ff
    5651 
    5652 > color sel #ff96e0ff
    5653 
    5654 > color sel #ff93f0ff
    5655 
    5656 > color sel #ff8fffff
    5657 
    5658 > color sel #f88effff
    5659 
    5660 > color sel #e88bffff
    5661 
    5662 > color sel #dd8affff
    5663 
    5664 > color sel #d68affff
    5665 
    5666 > color sel #b285ffff
    5667 
    5668 > color sel #a282ffff
    5669 
    5670 > color sel #9b80ffff
    5671 
    5672 > color sel #967fffff
    5673 
    5674 > color sel #957fffff
    5675 
    5676 > color sel #927fffff
    5677 
    5678 > color sel #8c7fffff
    5679 
    5680 > color sel #8b7fffff
    5681 
    5682 > color sel #8a7fffff
    5683 
    5684 > color sel #897fffff
    5685 
    5686 > color sel #877fffff
    5687 
    5688 > color sel #807fffff
    5689 
    5690 > color sel #7b7fffff
    5691 
    5692 > color sel #7a7fffff
    5693 
    5694 > color sel #797fffff
    5695 
    5696 > color sel #787fffff
    5697 
    5698 > color sel #777fffff
    5699 
    5700 > color sel #767fffff
    5701 
    5702 > color sel #757fffff
    5703 
    5704 > color sel #747fffff
    5705 
    5706 > color sel #717fffff
    5707 
    5708 > color sel #707fffff
    5709 
    5710 > color sel #6e7fffff
    5711 
    5712 > color sel #6b7fffff
    5713 
    5714 > color sel #667fffff
    5715 
    5716 > color sel #617fffff
    5717 
    5718 > color sel #5c7fffff
    5719 
    5720 > color sel #457fffff
    5721 
    5722 > color sel #3a7fffff
    5723 
    5724 > color sel #387fffff
    5725 
    5726 > color sel #367fffff
    5727 
    5728 > color sel #347fffff
    5729 
    5730 > color sel #2e7fffff
    5731 
    5732 > color sel #2b7fffff
    5733 
    5734 > color sel #297fffff
    5735 
    5736 > color sel #2d7fffff
    5737 
    5738 > color sel #317fffff
    5739 
    5740 > color sel #347fffff
    5741 
    5742 > color sel #3b7fffff
    5743 
    5744 > color sel #3e7fffff
    5745 
    5746 > color sel #437fffff
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    7260 > color sel #c2eaffff
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    7264 > color sel #c2ffe7ff
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    7266 > color sel #c2ffc7ff
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    7268 > color sel #c9ffc2ff
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    7270 > color sel #cfffc2ff
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    7272 > color sel #ddffc2ff
    7273 
    7274 > color sel #dfffc2ff
    7275 
    7276 > color sel #e2ffc2ff
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    7278 > color sel #e5ffc2ff
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    7280 > color sel #e8ffc2ff
    7281 
    7282 > color sel #e9ffc2ff
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    7284 > color sel #ecffc2ff
    7285 
    7286 > color sel #f2ffc2ff
    7287 
    7288 > color sel #f5ffc2ff
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    7290 > color sel #faffc2ff
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    7292 > color sel #fff6c2ff
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    7294 > color sel #fff4c2ff
    7295 
    7296 > color sel #fff2c2ff
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    7298 > color sel #ffedc2ff
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    7300 > color sel #ffe6c2ff
    7301 
    7302 > color sel #ffe1c2ff
    7303 
    7304 > color sel #ffddc2ff
    7305 
    7306 > ui tool show "Color Actions"
    7307 
    7308 > color sel light yellow
    7309 
    7310 > color sel tan
    7311 
    7312 > color sel wheat
    7313 
    7314 > color sel tan
    7315 
    7316 > color sel light green
    7317 
    7318 > color sel dark gray
    7319 
    7320 > color sel pale green
    7321 
    7322 > color sel light green
    7323 
    7324 > color sel dark sea green
    7325 
    7326 > color sel light green
    7327 
    7328 > color sel lavender
    7329 
    7330 > hide #!1 models
    7331 
    7332 > color sel lavender
    7333 
    7334 > color sel #ffdcc1ff
    7335 
    7336 > color sel #ffdcc0ff
    7337 
    7338 > color sel #ffcea7ff
    7339 
    7340 > color sel #ffc699ff
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    7343 
    7344 > color sel #ffb57bff
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    7346 > color sel #ffac6cff
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    7350 > color sel #ffa158ff
    7351 
    7352 > color sel #ff9c4eff
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    7354 > color sel #ff9847ff
    7355 
    7356 > color sel #ff9643ff
    7357 
    7358 > color sel #ff9542ff
    7359 
    7360 > color sel #ff9644ff
    7361 
    7362 > color sel #ff9b4dff
    7363 
    7364 > color sel #ffa965ff
    7365 
    7366 > color sel #ffb378ff
    7367 
    7368 > color sel #ffb982ff
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    7370 > color sel #ffc190ff
    7371 
    7372 > color sel #ffc79cff
    7373 
    7374 > color sel #ffcea8ff
    7375 
    7376 > color sel #ffd0acff
    7377 
    7378 > color sel #ffd3b0ff
    7379 
    7380 > color sel #ffd5b5ff
    7381 
    7382 > color sel #ffd7b7ff
    7383 
    7384 > color sel #ffd9bbff
    7385 
    7386 > color sel #ffdec5ff
    7387 
    7388 > color sel #ffe4ceff
    7389 
    7390 > color sel #ffe7d3ff
    7391 
    7392 > color sel #ffeadaff
    7393 
    7394 > color sel #ffebdcff
    7395 
    7396 > color sel #ffecdcff
    7397 
    7398 > color sel #ffebdcff
    7399 
    7400 > color sel #ffeadaff
    7401 
    7402 > color sel #ffe7d5ff
    7403 
    7404 > color sel #ffe1caff
    7405 
    7406 > color sel #ffdcc0ff
    7407 
    7408 > color sel #ffdabdff
    7409 
    7410 > color sel #ffd9baff
    7411 
    7412 > color sel #ffd7b8ff
    7413 
    7414 > color sel #ffd4b3ff
    7415 
    7416 > color sel #ffd3b1ff
    7417 
    7418 > color sel lavender
    7419 
    7420 > select clear
    7421 
    7422 > select #7 /H
    7423 
    7424 943 atoms, 970 bonds, 118 residues, 1 model selected 
    7425 
    7426 > color sel violet
    7427 
    7428 > color zone #1 near #7 distance 5
    7429 
    7430 > show #!1 models
    7431 
    7432 > hide #!7 models
    7433 
    7434 > volume #1 level 0.2
    7435 
    7436 > volume #1 level 0.25
    7437 
    7438 > volume #1 level 0.22
    7439 
    7440 > volume #1 level 0.21
    7441 
    7442 > surface dust #1 size 7
    7443 
    7444 > surface dust #1 size 6.72
    7445 
    7446 > surface dust #1 size 10.85
    7447 
    7448 > select #7 /H
    7449 
    7450 943 atoms, 970 bonds, 118 residues, 1 model selected 
    7451 
    7452 > color zone #1 near #7 distance 5
    7453 
    7454 > ui tool show "Color Actions"
    7455 
    7456 > color (:NAG,NAM, BMA) lightpink
    7457 
    7458 > color zone #1 near #7 distance 5
    7459 
    7460 > color (#7 /H) slateblue
    7461 
    7462 > color zone #1 near #7 distance 5
    7463 
    7464 > color (#7 /L) mediumslateblue
    7465 
    7466 > color zone #1 near #7 distance 5
    7467 
    7468 > color (#7 /H) slateblue
    7469 
    7470 > color (#7 /H) darkslateblue
    7471 
    7472 > color zone #1 near #7 distance 5
    7473 
    7474 > color (#7 /L) slateblue
    7475 
    7476 > color zone #1 near #7 distance 5
    7477 
    7478 > color (#7 /L) mediumslateblue
    7479 
    7480 > color zone #1 near #7 distance 5
    7481 
    7482 > select #7 /L
    7483 
    7484 762 atoms, 780 bonds, 101 residues, 1 model selected 
    7485 
    7486 > color #1 #30d3b1ff
    7487 
    7488 > color #1 #3029b1ff
    7489 
    7490 > color #1 #30295dff
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    7492 > color #1 #30295cff
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    7494 > color #1 #302958ff
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    7496 > color #1 #302957ff
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    7498 > color #1 #302955ff
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    7500 > color #1 #302953ff
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    7502 > color #1 #302951ff
    7503 
    7504 > color #1 #302950ff
    7505 
    7506 > color #1 #30294fff
    7507 
    7508 > color #1 #30294eff
    7509 
    7510 > color #1 #30294dff
    7511 
    7512 > color #1 #30294cff
    7513 
    7514 > color #1 #30294bff
    7515 
    7516 > color #1 #30294aff
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    7518 > color #1 #302949ff
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    7520 > color #1 #302947ff
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    7522 > color #1 #302946ff
    7523 
    7524 > color #1 #302944ff
    7525 
    7526 > color #1 #302941ff
    7527 
    7528 > color #1 #302940ff
    7529 
    7530 > color #1 #30293dff
    7531 
    7532 > color #1 #30293cff
    7533 
    7534 > color #1 #30293bff
    7535 
    7536 > color #1 #302939ff
    7537 
    7538 > color #1 #302936ff
    7539 
    7540 > color #1 #302935ff
    7541 
    7542 > color #1 #302934ff
    7543 
    7544 > color #1 #302932ff
    7545 
    7546 > color #1 #302930ff
    7547 
    7548 > color #1 #30292eff
    7549 
    7550 > color #1 #30292dff
    7551 
    7552 > color #1 #30292bff
    7553 
    7554 > color #1 #302929ff
    7555 
    7556 > color #1 #302928ff
    7557 
    7558 > color #1 #302927ff
    7559 
    7560 > color #1 #302926ff
    7561 
    7562 > color #1 #302925ff
    7563 
    7564 > color #1 #302924ff
    7565 
    7566 > color #1 #302922ff
    7567 
    7568 > color #1 #302920ff
    7569 
    7570 > color #1 #30291eff
    7571 
    7572 > color #1 #30291bff
    7573 
    7574 > color #1 #30291aff
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    7576 > color #1 #302918ff
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    7578 > color #1 #302916ff
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    7580 > color #1 #302915ff
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    7582 > color #1 #302911ff
    7583 
    7584 > color #1 #30290aff
    7585 
    7586 > color #1 #302908ff
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    7588 > color #1 #302906ff
    7589 
    7590 > color #1 #302905ff
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    7592 > color #1 #302904ff
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    7594 > color #1 #302903ff
    7595 
    7596 > color #1 #302902ff
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    7598 > color #1 #302907ff
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    7600 > color #1 #30290dff
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    7602 > color #1 #30291cff
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    7604 > color #1 #30292cff
    7605 
    7606 > color #1 #302938ff
    7607 
    7608 > color #1 #302946ff
    7609 
    7610 > color #1 #302951ff
    7611 
    7612 > color #1 #30295eff
    7613 
    7614 > color #1 #302965ff
    7615 
    7616 > color #1 #302970ff
    7617 
    7618 > color #1 #302979ff
    7619 
    7620 > color #1 #30297fff
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    7622 > color #1 #302988ff
    7623 
    7624 > color #1 #302992ff
    7625 
    7626 > color #1 #302997ff
    7627 
    7628 > color #1 #3029a0ff
    7629 
    7630 > color #1 #3029aaff
    7631 
    7632 > color #1 #3029aeff
    7633 
    7634 > color #1 #3029b1ff
    7635 
    7636 > color #1 #3029b3ff
    7637 
    7638 > color #1 #3029b5ff
    7639 
    7640 > color #1 #3029b6ff
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    7642 > color #1 #3029b8ff
    7643 
    7644 > color #1 #3029b9ff
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    7646 > color #1 #3029baff
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    7648 > color #1 #3029bbff
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    7650 > color #1 #3029bcff
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    7652 > color #1 #3029bdff
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    7654 > color #1 #3029beff
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    7656 > color #1 #3029c1ff
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    7658 > color #1 #3029c2ff
    7659 
    7660 > color #1 #3029c3ff
    7661 
    7662 > color #1 #3029c4ff
    7663 
    7664 > color #1 #3029c5ff
    7665 
    7666 > color #1 #3029c6ff
    7667 
    7668 > color #1 #3029c7ff
    7669 
    7670 > color #1 #3029c8ff
    7671 
    7672 > color #1 #3029c9ff
    7673 
    7674 > color #1 #3029caff
    7675 
    7676 > color #1 #3029cbff
    7677 
    7678 > color #1 #3029ccff
    7679 
    7680 > color #1 #3029cdff
    7681 
    7682 > color #1 #3029ceff
    7683 
    7684 > color #1 #3029cfff
    7685 
    7686 > color #1 #3029d0ff
    7687 
    7688 > color #1 #3029d1ff
    7689 
    7690 > color #1 #3029d2ff
    7691 
    7692 > color #1 #3029d3ff
    7693 
    7694 > color #1 #3029d5ff
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    7696 > color #1 #3029d7ff
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    7698 > color #1 #3029d9ff
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    7700 > color #1 #3029dcff
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    7702 > color #1 #3029dfff
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    7704 > color #1 #3029e0ff
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    7706 > color #1 #3026e0ff
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    7708 > color #1 #3016e0ff
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    7710 > color #1 #3013e0ff
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    7712 > color #1 #300ee0ff
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    7714 > color #1 #300ce0ff
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    7716 > color #1 #300ae0ff
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    7724 > color #1 #3004e0ff
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    7726 > color #1 #3003e0ff
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    7728 > color #1 #3002e0ff
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    7730 > color #1 #3000e0ff
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    7734 > color #1 #3009e0ff
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    7736 > color #1 #3011e0ff
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    7738 > color #1 #3034e0ff
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    7740 > color #1 #303de0ff
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    7742 > color #1 #3050e0ff
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    7744 > color #1 #305fe0ff
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    7746 > color #1 #3066e0ff
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    7748 > color #1 #306fe0ff
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    7750 > color #1 #307ae0ff
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    7760 > color #1 #30a2e0ff
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    7762 > color #1 #30a8e0ff
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    7764 > color #1 #30aae0ff
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    7766 > color #1 #30abe0ff
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    7768 > color #1 #30ace0ff
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    7770 > color #1 #30aee0ff
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    7772 > color #1 #30afe0ff
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    7774 > color #1 #30b2e0ff
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    7776 > color #1 #30b4e0ff
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    7778 > color #1 #30b7e0ff
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    7780 > color #1 #30b9e0ff
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    7782 > color #1 #30b6e0ff
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    7786 > color #1 #3098e0ff
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    7788 > color #1 #3085e0ff
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    7790 > color #1 #3073e0ff
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    7792 > color #1 #306ce0ff
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    7796 > color #1 #305ae0ff
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    7800 > color #1 #3055e0ff
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    7802 > color #1 #3029e0ff
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    7810 > color #1 #342d5dff
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    7812 > color #1 #36305dff
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    7814 > color #1 #37325dff
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    7816 > color #1 #39345dff
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    7834 > color #1 #423e5dff
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    7838 > color #1 #44405dff
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