Changes between Initial Version and Version 1 of Ticket #17325


Ignore:
Timestamp:
Apr 8, 2025, 9:57:54 AM (7 months ago)
Author:
Eric Pettersen
Comment:

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #17325

    • Property Component Unassigned → Window Toolkit
    • Property Owner set to Tom Goddard
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → Crash moving window between screens

  • Ticket #17325 – Description

    initial v1  
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    1983     "name" : "fcntl.cpython-311-darwin.so"
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     71[deleted to fit within ticket limits]
     72
    219273],
    219374  "sharedCache" : {
    … …  
    39571838Nothing selected 
    39581839
    3959 > fitmap #8 inMap #7
    3960 
    3961 Fit molecule RFXATPase_state1_2.98A-1.pdb (#8) to map
    3962 RfxATP_state1_withoutADP_F1.mrc (#7) using 41723 atoms 
    3963 average map value = 0.04408, steps = 112 
    3964 shifted from previous position = 3.13 
    3965 rotated from previous position = 2.25 degrees 
    3966 atoms outside contour = 33470, contour level = 0.103 
    3967  
    3968 Position of RFXATPase_state1_2.98A-1.pdb (#8) relative to
    3969 RfxATP_state1_withoutADP_F1.mrc (#7) coordinates: 
    3970 Matrix rotation and translation 
    3971 0.97622445 0.21492117 -0.02819088 -26.72514574 
    3972 -0.21024437 0.97048116 0.11816781 32.35392173 
    3973 0.05275548 -0.10943133 0.99259340 14.03890220 
    3974 Axis -0.46543944 -0.16553502 -0.86946207 
    3975 Axis point 128.83594929 149.69566655 0.00000000 
    3976 Rotation angle (degrees) 14.15223914 
    3977 Shift along axis -5.12306287 
    3978  
    3979 
    3980 > open "/Volumes/暴躁的喷火龙/Rfx ATPase
    3981 > 相关/RfxATPaseRefine/RealSpaceRefine_17/RealSpaceRefine_3/RFXATP_state3_2.98A.pdb"
    3982 
    3983 Chain information for RFXATP_state3_2.98A.pdb #10 
    3984 --- 
    3985 Chain | Description 
    3986 A | No description available 
    3987 B | No description available 
    3988 C | No description available 
    3989 D | No description available 
    3990 E | No description available 
    3991 F | No description available 
    3992 G | No description available 
    3993 H J K L M N O P | No description available 
    3994 I | No description available 
    3995 Q | No description available 
    3996 R | No description available 
    3997 S | No description available 
    3998 T Z | No description available 
    3999 U X | No description available 
    4000 V | No description available 
    4001 W | No description available 
    4002 Y | No description available 
    4003  
    4004 4 atoms have alternate locations. Control/examine alternate locations with
    4005 Altloc Explorer [start tool...] or the altlocs command. 
    4006 
    4007 > hide #!8,10 atoms
    4008 
    4009 > show #!8,10 cartoons
    4010 
    4011 > select add #10
    4012 
    4013 41664 atoms, 42310 bonds, 2 pseudobonds, 5415 residues, 2 models selected 
    4014 
    4015 > view matrix models #10,1,0,0,-10.589,0,1,0,-7.4647,0,0,1,-9.3559
    4016 
    4017 > ui mousemode right "rotate selected models"
    4018 
    4019 > view matrix models
    4020 > #10,0.76052,0.64884,0.024792,-93.638,-0.62796,0.74469,-0.22605,199.08,-0.16514,0.15635,0.9738,-3.506
    4021 
    4022 > ui mousemode right "translate selected models"
    4023 
    4024 > view matrix models
    4025 > #10,0.76052,0.64884,0.024792,-86.508,-0.62796,0.74469,-0.22605,209.64,-0.16514,0.15635,0.9738,-11.296
    4026 
    4027 > close #10
    4028 
    4029 > select add #7
    4030 
    4031 2 models selected 
    4032 
    4033 > view matrix models
    4034 > #7,-0.83572,-0.53982,0.10088,415.05,0.53709,-0.84174,-0.054778,260.68,0.11449,0.0084053,0.99339,-39.287
    4035 
    4036 > ui mousemode right "rotate selected models"
    4037 
    4038 > view matrix models
    4039 > #7,0.95714,0.16723,0.23649,-89.037,-0.1543,0.98537,-0.072306,37.936,-0.24512,0.032717,0.96894,28.818
    4040 
    4041 > ui mousemode right "translate selected models"
    4042 
    4043 > view matrix models
    4044 > #7,0.95714,0.16723,0.23649,-87.29,-0.1543,0.98537,-0.072306,40.751,-0.24512,0.032717,0.96894,27.221
    4045 
    4046 > view matrix models
    4047 > #7,0.95714,0.16723,0.23649,-86.543,-0.1543,0.98537,-0.072306,42.25,-0.24512,0.032717,0.96894,24.956
    4048 
    4049 > ui mousemode right "rotate selected models"
    4050 
    4051 > view matrix models
    4052 > #7,0.92321,0.37982,0.058404,-88.959,-0.38192,0.92371,0.029897,78.808,-0.042593,-0.049907,0.99785,-2.6972
    4053 
    4054 > view matrix models
    4055 > #7,0.91969,0.39205,-0.021748,-75.952,-0.39242,0.91582,-0.085316,103.52,-0.01353,0.086998,0.99612,-34.686
    4056 
    4057 > view matrix models
    4058 > #7,0.92247,0.38437,0.036047,-85.6,-0.38453,0.92311,-0.0026085,85.396,-0.034278,-0.011455,0.99935,-12.076
    4059 
    4060 > view matrix models
    4061 > #7,0.76202,0.644,0.067666,-111.69,-0.64537,0.76387,-0.002207,166.06,-0.053109,-0.041988,0.99771,-2.2214
    4062 
    4063 > view matrix models
    4064 > #7,0.65427,0.75569,0.029352,-106.02,-0.75604,0.65266,0.049297,199.4,0.018097,-0.054445,0.99835,-13.441
    4065 
    4066 > view matrix models
    4067 > #7,0.95204,-0.28314,-0.11602,67.299,0.24823,0.93635,-0.24825,7.6394,0.17892,0.20754,0.96172,-88.537
    4068 
    4069 > view matrix models
    4070 > #7,0.94298,-0.2658,-0.20036,81.127,0.22255,0.95108,-0.21431,3.4041,0.24752,0.1575,0.956,-90.737
    4071 
    4072 > view matrix models
    4073 > #7,0.96073,-0.23679,-0.14467,61.843,0.22866,0.97094,-0.070685,-28.033,0.1572,0.034829,0.98695,-55.257
    4074 
    4075 > view matrix models
    4076 > #7,0.9619,0.21075,-0.17416,-20.507,-0.22712,0.97058,-0.079934,60.391,0.15219,0.11644,0.98147,-69.263
    4077 
    4078 > ui mousemode right "translate selected models"
    4079 
    4080 > view matrix models
    4081 > #7,0.9619,0.21075,-0.17416,-18.141,-0.22712,0.97058,-0.079934,65.506,0.15219,0.11644,0.98147,-70.438
    4082 
    4083 > view matrix models
    4084 > #7,0.9619,0.21075,-0.17416,-9.0196,-0.22712,0.97058,-0.079934,60.113,0.15219,0.11644,0.98147,-77.849
    4085 
    4086 > view matrix models
    4087 > #7,0.9619,0.21075,-0.17416,-3.0965,-0.22712,0.97058,-0.079934,65.362,0.15219,0.11644,0.98147,-75.215
    4088 
    4089 > ui mousemode right "rotate selected models"
    4090 
    4091 > view matrix models
    4092 > #7,0.93248,0.31906,-0.16934,-19.577,-0.3338,0.9403,-0.066405,89.08,0.13804,0.11845,0.98332,-73.257
    4093 
    4094 > view matrix models
    4095 > #7,0.9156,0.31072,-0.2552,1.0399,-0.34905,0.92927,-0.1209,104.15,0.19958,0.19978,0.9593,-96.453
    4096 
    4097 > view matrix models
    4098 > #7,0.91676,0.39096,-0.081908,-46.718,-0.38877,0.92039,0.041794,83.547,0.091726,-0.0064719,0.99576,-42.301
    4099 
    4100 > view matrix models
    4101 > #7,0.91372,0.37945,-0.14535,-32.232,-0.35999,0.92185,0.14354,59.093,0.18846,-0.078833,0.97891,-43.441
    4102 
    4103 > ui mousemode right "translate selected models"
    4104 
    4105 > view matrix models
    4106 > #7,0.91372,0.37945,-0.14535,-43.381,-0.35999,0.92185,0.14354,51.397,0.18846,-0.078833,0.97891,-38.445
    4107 
    4108 > view matrix models
    4109 > #7,0.91372,0.37945,-0.14535,-74.107,-0.35999,0.92185,0.14354,94.41,0.18846,-0.078833,0.97891,-33.917
    4110 
    4111 > view matrix models
    4112 > #7,0.91372,0.37945,-0.14535,-48.806,-0.35999,0.92185,0.14354,-0.85681,0.18846,-0.078833,0.97891,-44.749
    4113 
    4114 > ui mousemode right "rotate selected models"
    4115 
    4116 > view matrix models
    4117 > #7,0.93287,0.35507,-0.060677,-63.236,-0.36003,0.91353,-0.18932,61.939,-0.011792,0.19845,0.98004,-61.127
    4118 
    4119 > view matrix models
    4120 > #7,0.59552,0.72577,-0.34442,-19.476,-0.76545,0.64276,0.030941,151.52,0.24383,0.24521,0.93831,-111.2
    4121 
    4122 > ui mousemode right "translate selected models"
    4123 
    4124 > view matrix models
    4125 > #7,0.59552,0.72577,-0.34442,-49.852,-0.76545,0.64276,0.030941,124.52,0.24383,0.24521,0.93831,-101.83
    4126 
    4127 > view matrix models
    4128 > #7,0.59552,0.72577,-0.34442,-60.128,-0.76545,0.64276,0.030941,116.16,0.24383,0.24521,0.93831,-94.184
    4129 
    4130 > close #9
    4131 
    4132 > close #8
    4133 
    4134 > close #1
    4135 
    4136 > close #7
    4137 
    4138 > open /Users/wujingyi/Downloads/RfxATP_state1_withoutADP_F1.mrc
    4139 
    4140 Opened RfxATP_state1_withoutADP_F1.mrc as #1, grid size 400,400,400, pixel
    4141 0.95, shown at level 0.101, step 2, values float32 
    4142 
    4143 > open "/Volumes/暴躁的喷火龙/Rfx ATPase 相关/RFX ATPase
    4144 > 结构/RFXATPase_state1_2.98A-1.pdb"
    4145 
    4146 Chain information for RFXATPase_state1_2.98A-1.pdb #7 
    4147 --- 
    4148 Chain | Description 
    4149 A | No description available 
    4150 B | No description available 
    4151 C | No description available 
    4152 D | No description available 
    4153 E | No description available 
    4154 F | No description available 
    4155 G | No description available 
    4156 H L O P | No description available 
    4157 I | No description available 
    4158 J K M N | No description available 
    4159 Q | No description available 
    4160 R | No description available 
    4161 S | No description available 
    4162 T Z | No description available 
    4163 U X | No description available 
    4164 V | No description available 
    4165 W | No description available 
    4166 Y | No description available 
    4167  
    4168 4 atoms have alternate locations. Control/examine alternate locations with
    4169 Altloc Explorer [start tool...] or the altlocs command. 
    4170 
    4171 > hide #!7 atoms
    4172 
    4173 > show #!7 cartoons
    4174 
    4175 > surface dust #1 size 9.5
    4176 
    4177 > fitmap #7 inMap #1
    4178 
    4179 Fit molecule RFXATPase_state1_2.98A-1.pdb (#7) to map
    4180 RfxATP_state1_withoutADP_F1.mrc (#1) using 41723 atoms 
    4181 average map value = 0.04077, steps = 136 
    4182 shifted from previous position = 4.02 
    4183 rotated from previous position = 3.84 degrees 
    4184 atoms outside contour = 34651, contour level = 0.10124 
    4185  
    4186 Position of RFXATPase_state1_2.98A-1.pdb (#7) relative to
    4187 RfxATP_state1_withoutADP_F1.mrc (#1) coordinates: 
    4188 Matrix rotation and translation 
    4189 0.99804835 -0.05934006 -0.01944861 16.74869891 
    4190 0.05979253 0.99793245 0.02357275 -13.35557001 
    4191 0.01800960 -0.02468963 0.99953293 4.36796433 
    4192 Axis -0.36047882 -0.27978089 0.88981890 
    4193 Axis point 225.78118362 284.45693547 0.00000000 
    4194 Rotation angle (degrees) 3.83836701 
    4195 Shift along axis 1.58577930 
    4196  
    4197 
    4198 > volume #1 color #b2b2b24d
    4199 
    4200 > volume #1 color #b2b2b227
    4201 
    4202 > volume #1 color #b22eb227
    4203 
    4204 > volume #1 color #ff80b227
    4205 
    4206 > volume #1 color #ff80b226
    4207 
    4208 > select add #7
    4209 
    4210 41723 atoms, 42367 bonds, 9 pseudobonds, 5426 residues, 2 models selected 
    4211 
    4212 > ui mousemode right "rotate selected models"
    4213 
    4214 > view matrix models
    4215 > #7,0.98144,0.18462,0.051915,-38.788,-0.18689,0.98144,0.043017,32.642,-0.04301,-0.051921,0.99772,21.285
    4216 
    4217 > view matrix models
    4218 > #7,0.97737,0.20827,-0.037143,-25.986,-0.20456,0.97514,0.085249,29.35,0.053975,-0.075722,0.99567,7.8166
    4219 
    4220 > view matrix models
    4221 > #7,0.3135,0.89632,0.31357,-93.877,-0.94688,0.31999,0.032003,301.32,-0.071653,-0.30695,0.94903,83.234
    4222 
    4223 > view matrix models
    4224 > #7,0.27847,0.948,0.1541,-67.461,-0.95389,0.25426,0.15953,291.34,0.11206,-0.19141,0.97509,22.238
    4225 
    4226 > view matrix models
    4227 > #7,-0.89188,-0.12145,0.43567,300.64,-0.070548,-0.91412,-0.39926,445.84,0.44674,-0.38683,0.80671,26.663
    4228 
    4229 > view matrix models
    4230 > #7,-0.97781,-0.1101,0.17823,362.26,0.097028,-0.99202,-0.080488,369.91,0.18567,-0.061408,0.98069,-16.918
    4231 
    4232 > ui mousemode right "translate selected models"
    4233 
    4234 > view matrix models
    4235 > #7,-0.97781,-0.1101,0.17823,369.79,0.097028,-0.99202,-0.080488,367.47,0.18567,-0.061408,0.98069,-16.517
    4236 
    4237 > ui mousemode right "rotate selected models"
    4238 
    4239 > view matrix models
    4240 > #7,-0.95046,-0.2701,0.15386,398.97,0.25491,-0.96051,-0.11154,337.56,0.17791,-0.066792,0.98178,-14.251
    4241 
    4242 > ui mousemode right "translate selected models"
    4243 
    4244 > view matrix models
    4245 > #7,-0.95046,-0.2701,0.15386,397.21,0.25491,-0.96051,-0.11154,335.28,0.17791,-0.066792,0.98178,-14.171
    4246 
    4247 > select subtract #7
    4248 
    4249 Nothing selected 
    4250 
    4251 > fitmap #7 inMap #1
    4252 
    4253 Fit molecule RFXATPase_state1_2.98A-1.pdb (#7) to map
    4254 RfxATP_state1_withoutADP_F1.mrc (#1) using 41723 atoms 
    4255 average map value = 0.04023, steps = 80 
    4256 shifted from previous position = 2.74 
    4257 rotated from previous position = 1.81 degrees 
    4258 atoms outside contour = 34774, contour level = 0.10124 
    4259  
    4260 Position of RFXATPase_state1_2.98A-1.pdb (#7) relative to
    4261 RfxATP_state1_withoutADP_F1.mrc (#1) coordinates: 
    4262 Matrix rotation and translation 
    4263 -0.94648353 -0.29356976 0.13411086 404.06536557 
    4264 0.27833502 -0.95279058 -0.12132491 329.83743239 
    4265 0.16339689 -0.07750428 0.98351133 -12.14291093 
    4266 Axis 0.07629892 -0.05099179 0.99578025 
    4267 Axis point 178.19941142 194.35490456 0.00000000 
    4268 Rotation angle (degrees) 163.31174632 
    4269 Shift along axis 1.91907946 
    4270  
    4271 
    4272 > select add #1
    4273 
    4274 2 models selected 
    4275 
    4276 > ui mousemode right "rotate selected models"
    4277 
    4278 > view matrix models
    4279 > #1,0.99784,0.031519,-0.057702,3.7445,-0.041622,0.98218,-0.18327,41.551,0.050897,0.18527,0.98137,-42.827
    4280 
    4281 > view matrix models
    4282 > #1,0.99784,0.031523,-0.057713,3.7455,-0.04163,0.98218,-0.1833,41.559,0.050906,0.18531,0.98136,-42.834
    4283 
    4284 > view matrix models
    4285 > #1,0.99858,0.026368,-0.046311,2.7359,-0.033003,0.9883,-0.14892,33.065,0.041843,0.15024,0.98776,-35.309
    4286 
    4287 > ui mousemode right "translate selected models"
    4288 
    4289 > view matrix models
    4290 > #1,0.99858,0.026368,-0.046311,26.097,-0.033003,0.9883,-0.14892,38.648,0.041843,0.15024,0.98776,-34.996
    4291 
    4292 > view matrix models
    4293 > #1,0.99858,0.026368,-0.046311,25.542,-0.033003,0.9883,-0.14892,29.187,0.041843,0.15024,0.98776,-37.84
    4294 
    4295 > ui mousemode right "rotate selected models"
    4296 
    4297 > view matrix models
    4298 > #1,0.99824,0.026046,-0.053332,26.825,-0.033706,0.98839,-0.14818,29.182,0.048853,0.14972,0.98752,-39.032
    4299 
    4300 > ui mousemode right "translate selected models"
    4301 
    4302 > view matrix models
    4303 > #1,0.99824,0.026046,-0.053332,8.1344,-0.033706,0.98839,-0.14818,30.937,0.048853,0.14972,0.98752,-37.661
    4304 
    4305 > ui mousemode right "rotate selected models"
    4306 
    4307 > view matrix models
    4308 > #1,0.97824,0.040182,0.20356,-33.084,-0.0047157,0.98512,-0.17179,29.942,-0.20744,0.16709,0.96387,11.601
    4309 
    4310 > fitmap #7 inMap #1
    4311 
    4312 Fit molecule RFXATPase_state1_2.98A-1.pdb (#7) to map
    4313 RfxATP_state1_withoutADP_F1.mrc (#1) using 41723 atoms 
    4314 average map value = 0.04286, steps = 136 
    4315 shifted from previous position = 3.45 
    4316 rotated from previous position = 1.82 degrees 
    4317 atoms outside contour = 34360, contour level = 0.10124 
    4318  
    4319 Position of RFXATPase_state1_2.98A-1.pdb (#7) relative to
    4320 RfxATP_state1_withoutADP_F1.mrc (#1) coordinates: 
    4321 Matrix rotation and translation 
    4322 -0.96674099 -0.23994963 -0.08852139 428.37710337 
    4323 0.23665701 -0.97049707 0.04613999 318.95845950 
    4324 -0.09698103 0.02365621 0.99500506 17.97471156 
    4325 Axis -0.04711490 0.01772721 0.99873216 
    4326 Axis point 195.28656125 185.29015588 0.00000000 
    4327 Rotation angle (degrees) 166.19572999 
    4328 Shift along axis 3.42322358 
    4329  
    4330 
    4331 > ui mousemode right select
    4332 
    4333 > select clear
    4334 
    4335 [Repeated 1 time(s)]
    4336 
    4337 > open "/Volumes/暴躁的喷火龙/Rfx ATPase
    4338 > 相关/RfxATPaseRefine/RealSpaceRefine_17/RealSpaceRefine_2/RFXATP_state2_3.02A.pdb"
    4339 
    4340 Chain information for RFXATP_state2_3.02A.pdb #8 
    4341 --- 
    4342 Chain | Description 
    4343 A | No description available 
    4344 B | No description available 
    4345 C | No description available 
    4346 D | No description available 
    4347 E | No description available 
    4348 F | No description available 
    4349 G | No description available 
    4350 H I | No description available 
    4351 J K | No description available 
    4352 L | No description available 
    4353 M N O P Q | No description available 
    4354 R | No description available 
    4355 S | No description available 
    4356 T Z | No description available 
    4357 U X | No description available 
    4358 V | No description available 
    4359 W | No description available 
    4360 Y | No description available 
    4361  
    4362 4 atoms have alternate locations. Control/examine alternate locations with
    4363 Altloc Explorer [start tool...] or the altlocs command. 
    4364 
    4365 > open "/Volumes/暴躁的喷火龙/Rfx ATPase
    4366 > 相关/RfxATPaseRefine/RealSpaceRefine_17/RealSpaceRefine_3/RFXATP_state3_2.98A.pdb"
    4367 
    4368 Chain information for RFXATP_state3_2.98A.pdb #9 
    4369 --- 
    4370 Chain | Description 
    4371 A | No description available 
    4372 B | No description available 
    4373 C | No description available 
    4374 D | No description available 
    4375 E | No description available 
    4376 F | No description available 
    4377 G | No description available 
    4378 H J K L M N O P | No description available 
    4379 I | No description available 
    4380 Q | No description available 
    4381 R | No description available 
    4382 S | No description available 
    4383 T Z | No description available 
    4384 U X | No description available 
    4385 V | No description available 
    4386 W | No description available 
    4387 Y | No description available 
    4388  
    4389 4 atoms have alternate locations. Control/examine alternate locations with
    4390 Altloc Explorer [start tool...] or the altlocs command. 
    4391 
    4392 > hide #!7-9 atoms
    4393 
    4394 > show #!7-9 cartoons
    4395 
    4396 > hide #!7 models
    4397 
    4398 > hide #!8 models
    4399 
    4400 > show #!8 models
    4401 
    4402 > hide #!8 models
    4403 
    4404 > select add #1
    4405 
    4406 2 models selected 
    4407 
    4408 > ui mousemode right "rotate selected models"
    4409 
    4410 > view matrix models
    4411 > #1,-0.97037,-0.23901,0.035515,419.91,0.23572,-0.96865,-0.078444,350.65,0.053151,-0.067748,0.99629,2.5777
    4412 
    4413 > ui mousemode right "translate selected models"
    4414 
    4415 > view matrix models
    4416 > #1,-0.97037,-0.23901,0.035515,416.59,0.23572,-0.96865,-0.078444,339.72,0.053151,-0.067748,0.99629,-1.2446
    4417 
    4418 > hide #!9 models
    4419 
    4420 > show #!8 models
    4421 
    4422 > view matrix models
    4423 > #1,-0.97037,-0.23901,0.035515,345.96,0.23572,-0.96865,-0.078444,363.39,0.053151,-0.067748,0.99629,-2.3113
    4424 
    4425 > ui mousemode right "translate selected atoms"
    4426 
    4427 > ui mousemode right "rotate selected models"
    4428 
    4429 > view matrix models
    4430 > #1,0.92075,-0.19413,0.33842,-72.485,0.27823,0.9348,-0.22076,6.7297,-0.2735,0.29743,0.91473,1.8952
    4431 
    4432 > view matrix models
    4433 > #1,0.13093,0.98898,0.069111,-109.1,-0.90483,0.1477,-0.39932,415.04,-0.40513,-0.010249,0.9142,87.158
    4434 
    4435 > view matrix models
    4436 > #1,-0.23986,0.9708,0.004384,-24.349,-0.96326,-0.23743,-0.12553,456.38,-0.12082,-0.034331,0.99208,24.953
    4437 
    4438 > view matrix models
    4439 > #1,-0.21234,0.97717,-0.0064039,-29.056,-0.96114,-0.21003,-0.17918,459.45,-0.17643,-0.031892,0.9838,36.422
    4440 
    4441 > view matrix models
    4442 > #1,-0.1936,0.97382,-0.11911,-13.426,-0.96727,-0.20976,-0.14277,454.57,-0.16402,0.087575,0.98256,10.915
    4443 
    4444 > ui mousemode right "translate selected models"
    4445 
    4446 > view matrix models
    4447 > #1,-0.1936,0.97382,-0.11911,56.039,-0.96727,-0.20976,-0.14277,432.09,-0.16402,0.087575,0.98256,17.749
    4448 
    4449 > fitmap #8 inMap #1
    4450 
    4451 Fit molecule RFXATP_state2_3.02A.pdb (#8) to map
    4452 RfxATP_state1_withoutADP_F1.mrc (#1) using 41693 atoms 
    4453 average map value = 0.03895, steps = 312 
    4454 shifted from previous position = 2.45 
    4455 rotated from previous position = 3.63 degrees 
    4456 atoms outside contour = 35104, contour level = 0.10124 
    4457  
    4458 Position of RFXATP_state2_3.02A.pdb (#8) relative to
    4459 RfxATP_state1_withoutADP_F1.mrc (#1) coordinates: 
    4460 Matrix rotation and translation 
    4461 -0.19496911 -0.96149331 -0.19369476 435.88456688 
    4462 0.96437624 -0.22392600 0.14083899 31.70371768 
    4463 -0.17878904 -0.15933537 0.97089996 67.54728992 
    4464 Axis -0.15400038 -0.00764718 0.98804120 
    4465 Axis point 210.43375572 191.70784699 0.00000000 
    4466 Rotation angle (degrees) 102.94393921 
    4467 Shift along axis -0.62932566 
    4468  
    4469 
    4470 > hide #!8 models
    4471 
    4472 > show #!9 models
    4473 
    4474 > ui mousemode right "rotate selected models"
    4475 
    4476 > view matrix models
    4477 > #1,-0.20069,-0.93673,-0.28682,458.35,0.97475,-0.22019,0.037087,35.013,-0.097896,-0.27213,0.95727,79.624
    4478 
    4479 > view matrix models
    4480 > #1,-0.54665,-0.8357,0.052654,448.59,0.78016,-0.53115,-0.3305,193.28,0.30416,-0.13959,0.94234,-20.326
    4481 
    4482 > view matrix models
    4483 > #1,-0.98194,0.18213,0.051307,332.73,-0.18307,-0.983,-0.014229,412.84,0.047843,-0.023365,0.99858,-3.5188
    4484 
    4485 > ui mousemode right "translate selected models"
    4486 
    4487 > view matrix models
    4488 > #1,-0.98194,0.18213,0.051307,336.15,-0.18307,-0.983,-0.014229,410.41,0.047843,-0.023365,0.99858,-14.129
    4489 
    4490 > ui mousemode right "rotate selected models"
    4491 
    4492 > view matrix models
    4493 > #1,-0.21156,-0.97496,0.068448,412.87,0.88946,-0.22109,-0.39997,120.89,0.40509,-0.023736,0.91397,-68.114
    4494 
    4495 > view matrix models
    4496 > #1,-0.23443,-0.96721,-0.097748,443.04,0.90288,-0.17935,-0.39069,108.66,0.36035,-0.17984,0.91532,-29.315
    4497 
    4498 > ui mousemode right "translate selected models"
    4499 
    4500 > view matrix models
    4501 > #1,-0.23443,-0.96721,-0.097748,435.3,0.90288,-0.17935,-0.39069,108.91,0.36035,-0.17984,0.91532,-28.573
    4502 
    4503 > ui mousemode right "rotate selected models"
    4504 
    4505 > view matrix models
    4506 > #1,-0.30949,-0.92218,0.23194,386.54,0.80312,-0.38409,-0.4555,178.56,0.50914,0.0453,0.85949,-91.7
    4507 
    4508 > view matrix models
    4509 > #1,-0.29078,-0.93136,0.21914,386.88,0.95319,-0.30183,-0.017985,61.954,0.082893,0.20365,0.97553,-60.629
    4510 
    4511 > view matrix models
    4512 > #1,-0.34211,-0.91713,0.20453,396.27,0.933,-0.35741,-0.042049,80.618,0.11166,0.17644,0.97796,-61.185
    4513 
    4514 > view matrix models
    4515 > #1,-0.32848,-0.9432,-0.049801,440.61,0.93446,-0.3322,0.12814,47.414,-0.13741,-0.0044456,0.9905,19.494
    4516 
    4517 > view matrix models
    4518 > #1,-0.63985,-0.75621,0.13691,432.6,0.76725,-0.61842,0.16997,128.29,-0.043868,0.2138,0.97589,-38.552
    4519 
    4520 > view matrix models
    4521 > #1,-0.55479,-0.79218,0.25428,404.14,0.81426,-0.57975,-0.029596,144.61,0.17086,0.19063,0.96668,-73.367
    4522 
    4523 > fitmap #9 inMap #1
    4524 
    4525 Fit molecule RFXATP_state3_2.98A.pdb (#9) to map
    4526 RfxATP_state1_withoutADP_F1.mrc (#1) using 41664 atoms 
    4527 average map value = 0.04065, steps = 84 
    4528 shifted from previous position = 1.73 
    4529 rotated from previous position = 2.42 degrees 
    4530 atoms outside contour = 34719, contour level = 0.10124 
    4531  
    4532 Position of RFXATP_state3_2.98A.pdb (#9) relative to
    4533 RfxATP_state1_withoutADP_F1.mrc (#1) coordinates: 
    4534 Matrix rotation and translation 
    4535 -0.52344947 0.82977819 0.19356862 107.43103314 
    4536 -0.80993669 -0.55510715 0.18936369 416.56043578 
    4537 0.26458118 -0.05765600 0.96263834 -22.37825674 
    4538 Axis -0.14883064 -0.04278544 -0.98793666 
    4539 Axis point 167.56416462 180.27267990 0.00000000 
    4540 Rotation angle (degrees) 123.91477585 
    4541 Shift along axis -11.70344924 
    4542  
    4543 
    4544 > hide #!9 models
    4545 
    4546 > show #!7 models
    4547 
    4548 > view matrix models
    4549 > #1,0.90249,0.36148,0.23419,-95.305,-0.32338,0.92782,-0.18593,92.182,-0.2845,0.092068,0.95425,34.586
    4550 
    4551 > ui mousemode right "translate selected models"
    4552 
    4553 > view matrix models
    4554 > #1,0.90249,0.36148,0.23419,-92.259,-0.32338,0.92782,-0.18593,106.85,-0.2845,0.092068,0.95425,39.176
    4555 
    4556 > view matrix models
    4557 > #1,0.90249,0.36148,0.23419,-87.379,-0.32338,0.92782,-0.18593,104.13,-0.2845,0.092068,0.95425,40.688
    4558 
    4559 > ui mousemode right "rotate selected models"
    4560 
    4561 > view matrix models
    4562 > #1,0.90519,0.41617,-0.086184,-45.877,-0.42093,0.90589,-0.046645,104.06,0.058661,0.0785,0.99519,-28.692
    4563 
    4564 > view matrix models
    4565 > #1,0.8977,0.43274,-0.082866,-48.236,-0.43682,0.8987,-0.039055,107.25,0.057571,0.071257,0.9958,-27.17
    4566 
    4567 > view matrix models
    4568 > #1,0.90611,0.39509,0.15124,-80.989,-0.38925,0.91864,-0.067724,99.013,-0.16569,0.0024974,0.98617,30.333
    4569 
    4570 > view matrix models
    4571 > #1,0.91513,0.39842,0.061622,-68.615,-0.39628,0.91706,-0.044261,96.8,-0.074145,0.016085,0.99712,8.4582
    4572 
    4573 > select subtract #1
    4574 
    4575 Nothing selected 
    4576 
    4577 > select add #1
    4578 
    4579 2 models selected 
    4580 
    4581 > view matrix models
    4582 > #1,-0.52084,0.83782,-0.16368,155.82,-0.6798,-0.52304,-0.51411,509.47,-0.51634,-0.1565,0.84196,151.85
    4583 
    4584 > view matrix models
    4585 > #1,-0.74213,-0.64735,-0.17371,489.82,0.66907,-0.73089,-0.13472,231.02,-0.039753,-0.2162,0.97554,50.859
    4586 
    4587 > view matrix models
    4588 > #1,-0.7533,-0.58651,0.29758,402.52,0.52674,-0.80896,-0.26102,294.14,0.39382,-0.039881,0.91832,-56.687
    4589 
    4590 > ui mousemode right "translate selected models"
    4591 
    4592 > view matrix models
    4593 > #1,-0.7533,-0.58651,0.29758,415.76,0.52674,-0.80896,-0.26102,290.08,0.39382,-0.039881,0.91832,-56.792
    4594 
    4595 > select subtract #1
    4596 
    4597 Nothing selected 
    4598 
    4599 > hide #!1 models
    4600 
    4601 > show #!1 models
    4602 
    4603 > color #1 #ff80b2ff models
    4604 
    4605 > select add #1
    4606 
    4607 2 models selected 
    4608 
    4609 > view matrix models
    4610 > #1,-0.7533,-0.58651,0.29758,442.79,0.52674,-0.80896,-0.26102,380.85,0.39382,-0.039881,0.91832,-55.44
    4611 
    4612 > ui mousemode right "translate selected models"
    4613 
    4614 > view matrix models
    4615 > #1,-0.7533,-0.58651,0.29758,446.69,0.52674,-0.80896,-0.26102,388.45,0.39382,-0.039881,0.91832,-48.116
    4616 
    4617 > ui mousemode right "rotate selected models"
    4618 
    4619 > view matrix models
    4620 > #1,-0.81746,-0.57568,0.018822,502.64,0.57225,-0.81545,-0.087036,352.43,0.065453,-0.060377,0.99603,5.5883
    4621 
    4622 > ui mousemode right "translate selected models"
    4623 
    4624 > view matrix models
    4625 > #1,-0.81746,-0.57568,0.018822,510.94,0.57225,-0.81545,-0.087036,371.17,0.065453,-0.060377,0.99603,-4.0051
    4626 
    4627 > ui mousemode right "rotate selected models"
    4628 
    4629 > view matrix models
    4630 > #1,0.9404,-0.30666,-0.14699,151.16,0.31054,0.95055,0.0036449,60.933,0.1386,-0.049073,0.98913,-18.999
    4631 
    4632 > view matrix models
    4633 > #1,0.94258,0.27118,0.19494,-18.434,-0.26437,0.96251,-0.060662,178.57,-0.20408,0.0056438,0.97894,37.191
    4634 
    4635 > view matrix models
    4636 > #1,0.97155,0.18858,-0.14329,47.837,-0.17573,0.97958,0.09769,132.32,0.15878,-0.06973,0.98485,-18.097
    4637 
    4638 > view matrix models
    4639 > #1,0.98671,0.15401,0.051892,19.6,-0.15475,0.9879,0.010558,141.03,-0.049638,-0.018449,0.9986,9.2778
    4640 
    4641 > view matrix models
    4642 > #1,0.99318,0.11653,-0.0048243,35.025,-0.11623,0.99236,0.041337,127.77,0.0096042,-0.040494,0.99913,2.2251
    4643 
    4644 > view matrix models
    4645 > #1,0.99089,0.11403,-0.071604,46.933,-0.12143,0.98656,-0.1093,154.67,0.058179,0.11699,0.99143,-36.527
    4646 
    4647 > ui mousemode right "translate selected models"
    4648 
    4649 > ui mousemode right "rotate selected models"
    4650 
    4651 > view matrix models
    4652 > #1,0.98298,0.1349,0.12469,12.068,-0.11416,0.98038,-0.16069,162.95,-0.14392,0.14372,0.9791,-1.2664
    4653 
    4654 > ui mousemode right "translate selected models"
    4655 
    4656 > view matrix models
    4657 > #1,0.98298,0.1349,0.12469,-19.664,-0.11416,0.98038,-0.16069,157.99,-0.14392,0.14372,0.9791,-0.011895
    4658 
    4659 > ui mousemode right "rotate selected models"
    4660 
    4661 > view matrix models
    4662 > #1,0.99106,0.12059,0.057146,-7.2929,-0.11296,0.98609,-0.12195,150.27,-0.071058,0.11441,0.99089,-10.087
    4663 
    4664 > view matrix models
    4665 > #1,0.99366,0.11208,0.0085199,1.8747,-0.11123,0.9914,-0.069006,140.2,-0.016181,0.067621,0.99758,-12.487
    4666 
    4667 > ui mousemode right "translate selected models"
    4668 
    4669 > view matrix models
    4670 > #1,0.99366,0.11208,0.0085199,-8.3383,-0.11123,0.9914,-0.069006,179.3,-0.016181,0.067621,0.99758,-13.796
    4671 
    4672 > open /Users/wujingyi/Downloads/J276_003_volume_map_sharp.mrc
    4673 
    4674 Opened J276_003_volume_map_sharp.mrc as #10, grid size 400,400,400, pixel
    4675 0.95, shown at level 0.101, step 2, values float32 
    4676 
    4677 > volume flip #10
    4678 
    4679 Opened J276_003_volume_map_sharp.mrc z flip as #11, grid size 400,400,400,
    4680 pixel 0.95, shown at step 1, values float32 
    4681 
    4682 > surface dust #1 size 9.5
    4683 
    4684 [Repeated 2 time(s)]
    4685 
    4686 > volume #11 level 0.1898
    4687 
    4688 > view matrix models
    4689 > #1,0.99366,0.11208,0.0085199,-8.5676,-0.11123,0.9914,-0.069006,175.82,-0.016181,0.067621,0.99758,-8.4965
    4690 
    4691 > select add #11
    4692 
    4693 4 models selected 
    4694 
    4695 > close #10
    4696 
    4697 > view matrix models
    4698 > #1,0.99366,0.11208,0.0085199,-9.271,-0.11123,0.9914,-0.069006,174.67,-0.016181,0.067621,0.99758,-8.5799,#11,1,0,0,-0.70339,0,1,0,-1.151,0,0,1,-0.083462
    4699 
    4700 > select subtract #1
    4701 
    4702 2 models selected 
    4703 
    4704 > view matrix models #11,1,0,0,-24.883,0,1,0,-115.17,0,0,1,-3.4578
    4705 
    4706 > view matrix models #11,1,0,0,-14.96,0,1,0,-8.1909,0,0,1,-4.9614
    4707 
    4708 > view matrix models #11,1,0,0,-12.667,0,1,0,-129.71,0,0,1,-22.609
    4709 
    4710 > select add #1
    4711 
    4712 4 models selected 
    4713 
    4714 > view matrix models
    4715 > #1,0.99366,0.11208,0.0085199,-7.888,-0.11123,0.9914,-0.069006,154.52,-0.016181,0.067621,0.99758,-11.139,#11,1,0,0,-11.284,0,1,0,-149.87,0,0,1,-25.167
    4716 
    4717 > select subtract #11
    4718 
    4719 2 models selected 
    4720 
    4721 > view matrix models
    4722 > #1,0.99366,0.11208,0.0085199,-6.4335,-0.11123,0.9914,-0.069006,158.49,-0.016181,0.067621,0.99758,-0.46871
    4723 
    4724 > view matrix models
    4725 > #1,0.99366,0.11208,0.0085199,-7.6761,-0.11123,0.9914,-0.069006,152,-0.016181,0.067621,0.99758,0.52332
    4726 
    4727 > open /Users/wujingyi/Downloads/J276_003_volume_map_sharp.mrc
    4728 
    4729 Opened J276_003_volume_map_sharp.mrc as #10, grid size 400,400,400, pixel
    4730 0.95, shown at level 0.101, step 2, values float32 
    4731 
    4732 > close #11
    4733 
    4734 > volume #10 step 1
    4735 
    4736 > surface dust #1 size 9.5
    4737 
    4738 > volume #10 level 0.1812
    4739 
    4740 > surface dust #1 size 9.5
    4741 
    4742 > fitmap #10 inMap #1
    4743 
    4744 Fit map J276_003_volume_map_sharp.mrc in map RfxATP_state1_withoutADP_F1.mrc
    4745 using 188089 points 
    4746 correlation = -0.006151, correlation about mean = 0.01165, overlap = -25.22 
    4747 steps = 124, shift = 3.02, angle = 1.44 degrees 
    4748  
    4749 Position of J276_003_volume_map_sharp.mrc (#10) relative to
    4750 RfxATP_state1_withoutADP_F1.mrc (#1) coordinates: 
    4751 Matrix rotation and translation 
    4752 0.99219120 -0.11872377 -0.03822681 33.00709102 
    4753 0.12081950 0.99096707 0.05819723 -151.45253231 
    4754 0.03097211 -0.06236133 0.99757295 3.22774595 
    4755 Axis -0.43530083 -0.24985658 0.86491900 
    4756 Axis point 1221.20725162 293.99472165 0.00000000 
    4757 Rotation angle (degrees) 7.95974301 
    4758 Shift along axis 26.26513589 
    4759  
    4760 
    4761 > select add #10
    4762 
    4763 4 models selected 
    4764 
    4765 > ui mousemode right "rotate selected models"
    4766 
    4767 > view matrix models
    4768 > #1,0.97091,0.099541,-0.21778,40.434,-0.10837,0.99369,-0.028932,143.66,0.21353,0.05169,0.97557,-37.684,#10,0.96861,-0.0030468,-0.24857,56.703,0.011641,0.99938,0.033111,-10.51,0.24832,-0.034965,0.96805,-35.316
    4769 
    4770 > select subtract #1
    4771 
    4772 2 models selected 
    4773 
    4774 > view matrix models
    4775 > #10,-0.9324,0.29299,-0.21165,358.89,0.29835,0.95443,0.0068452,-52.02,0.20401,-0.056764,-0.97732,354.17
    4776 
    4777 > view matrix models
    4778 > #10,-0.93215,0.31812,-0.17292,346.59,0.28997,0.94188,0.16965,-79.574,0.21684,0.108,-0.97021,319.18
    4779 
    4780 > view matrix models
    4781 > #10,-0.95209,0.30384,-0.034637,326.33,0.29532,0.94293,0.15383,-77.736,0.079399,0.13623,-0.98749,343.6
    4782 
    4783 > ui mousemode right "translate selected models"
    4784 
    4785 > view matrix models
    4786 > #10,-0.95209,0.30384,-0.034637,325.96,0.29532,0.94293,0.15383,-75.425,0.079399,0.13623,-0.98749,332.17
    4787 
    4788 > fitmap #10 inMap #1
    4789 
    4790 Fit map J276_003_volume_map_sharp.mrc in map RfxATP_state1_withoutADP_F1.mrc
    4791 using 188089 points 
    4792 correlation = -0.007304, correlation about mean = 0.01435, overlap = -29.43 
    4793 steps = 128, shift = 0.762, angle = 2.55 degrees 
    4794  
    4795 Position of J276_003_volume_map_sharp.mrc (#10) relative to
    4796 RfxATP_state1_withoutADP_F1.mrc (#1) coordinates: 
    4797 Matrix rotation and translation 
    4798 -0.94519797 0.18352083 -0.27003869 390.20153472 
    4799 0.17116532 0.98283540 0.06882591 -159.08409996 
    4800 0.27803458 0.01883286 -0.96038643 307.90980210 
    4801 Axis -0.09081601 -0.99561473 -0.02244469 
    4802 Axis point 180.47276345 0.00000000 183.99021934 
    4803 Rotation angle (degrees) 164.02346511 
    4804 Shift along axis 116.03898949 
    4805  
    4806 
    4807 > surface dust #10 size 9.5
    4808 
    4809 > hide #!1 models
    4810 
    4811 > volume #10 level 0.1163
    4812 
    4813 > ui mousemode right "translate selected models"
    4814 
    4815 > view matrix models
    4816 > #10,-0.96121,0.27191,-0.046177,336.43,0.26447,0.9562,0.12544,-67.366,0.078264,0.10836,-0.99103,338.37
    4817 
    4818 > ui mousemode right "rotate selected models"
    4819 
    4820 > view matrix models
    4821 > #10,-0.95945,0.26317,-0.10101,349.53,0.24157,0.95229,0.1865,-75.323,0.14527,0.15454,-0.97725,313.7
    4822 
    4823 > view matrix models
    4824 > #10,-0.941,0.32028,-0.10925,336.66,0.2949,0.93447,0.19949,-84.745,0.16598,0.1555,-0.97379,308.85
    4825 
    4826 > ui mousemode right "translate selected models"
    4827 
    4828 > view matrix models
    4829 > #10,-0.941,0.32028,-0.10925,336.51,0.2949,0.93447,0.19949,-85.007,0.16598,0.1555,-0.97379,311.62
    4830 
    4831 > view matrix models
    4832 > #10,-0.941,0.32028,-0.10925,335.02,0.2949,0.93447,0.19949,-82.234,0.16598,0.1555,-0.97379,307.58
    4833 
    4834 > view matrix models
    4835 > #10,-0.941,0.32028,-0.10925,337.07,0.2949,0.93447,0.19949,-81.211,0.16598,0.1555,-0.97379,307.08
    4836 
    4837 > fitmap #10 inMap #1
    4838 
    4839 Fit map J276_003_volume_map_sharp.mrc in map RfxATP_state1_withoutADP_F1.mrc
    4840 using 412809 points 
    4841 correlation = 0.003388, correlation about mean = -0.01098, overlap = 26.25 
    4842 steps = 188, shift = 2.96, angle = 3.45 degrees 
    4843  
    4844 Position of J276_003_volume_map_sharp.mrc (#10) relative to
    4845 RfxATP_state1_withoutADP_F1.mrc (#1) coordinates: 
    4846 Matrix rotation and translation 
    4847 -0.88776004 0.24481426 -0.38980519 394.83049540 
    4848 0.20167323 0.96809819 0.14870711 -177.87661799 
    4849 0.41377531 0.05340296 -0.90881137 261.15290888 
    4850 Axis -0.11760697 -0.99163221 -0.05323677 
    4851 Axis point 179.43195104 0.00000000 178.94673905 
    4852 Rotation angle (degrees) 156.09754779 
    4853 Shift along axis 116.05042942 
    4854  
    4855 
    4856 > select subtract #10
    4857 
    4858 Nothing selected 
    4859 
    4860 > select add #10
    4861 
    4862 2 models selected 
    4863 
    4864 > ui mousemode right "rotate selected models"
    4865 
    4866 > view matrix models
    4867 > #10,-0.93304,0.31032,-0.18203,355.25,0.28502,0.94634,0.15235,-72.252,0.21954,0.090268,-0.97142,307.64
    4868 
    4869 > ui mousemode right "translate selected models"
    4870 
    4871 > view matrix models
    4872 > #10,-0.93304,0.31032,-0.18203,353.2,0.28502,0.94634,0.15235,-85.848,0.21954,0.090268,-0.97142,311.78
    4873 
    4874 > view matrix models
    4875 > #10,-0.93304,0.31032,-0.18203,353.31,0.28502,0.94634,0.15235,-85.037,0.21954,0.090268,-0.97142,312.82
    4876 
    4877 > ui mousemode right "rotate selected models"
    4878 
    4879 > view matrix models
    4880 > #10,-0.9315,0.30464,-0.19874,357.71,0.31409,0.94924,-0.017144,-54.858,0.18343,-0.078393,-0.9799,354.37
    4881 
    4882 > fitmap #10 inMap #1
    4883 
    4884 Fit map J276_003_volume_map_sharp.mrc in map RfxATP_state1_withoutADP_F1.mrc
    4885 using 412809 points 
    4886 correlation = 0.003971, correlation about mean = -0.01138, overlap = 29.2 
    4887 steps = 76, shift = 1.45, angle = 1.05 degrees 
    4888  
    4889 Position of J276_003_volume_map_sharp.mrc (#10) relative to
    4890 RfxATP_state1_withoutADP_F1.mrc (#1) coordinates: 
    4891 Matrix rotation and translation 
    4892 -0.89202044 0.17867377 -0.41518095 415.57480664 
    4893 0.23668091 0.96719546 -0.09227724 -144.51510345 
    4894 0.38507361 -0.18057859 -0.90504679 317.47235545 
    4895 Axis -0.10939237 -0.99139756 0.07186231 
    4896 Axis point 182.93569343 0.00000000 199.07523474 
    4897 Rotation angle (degrees) 156.19662314 
    4898 Shift along axis 120.62550380 
    4899  
    4900 
    4901 > select subtract #10
    4902 
    4903 Nothing selected 
    4904 
    4905 > fitmap #7 inMap #10
    4906 
    4907 Fit molecule RFXATPase_state1_2.98A-1.pdb (#7) to map
    4908 J276_003_volume_map_sharp.mrc (#10) using 41723 atoms 
    4909 average map value = 0.03999, steps = 92 
    4910 shifted from previous position = 2.94 
    4911 rotated from previous position = 3.89 degrees 
    4912 atoms outside contour = 34568, contour level = 0.11631 
    4913  
    4914 Position of RFXATPase_state1_2.98A-1.pdb (#7) relative to
    4915 J276_003_volume_map_sharp.mrc (#10) coordinates: 
    4916 Matrix rotation and translation 
    4917 0.99939912 -0.03433994 -0.00470912 14.18609868 
    4918 -0.03465788 -0.98811995 -0.14972575 409.89756479 
    4919 0.00048839 0.14979899 -0.98871635 348.63431455 
    4920 Axis 0.99984892 -0.01734993 -0.00106133 
    4921 Axis point 0.00000000 191.94050757 189.76759693 
    4922 Rotation angle (degrees) 171.38553254 
    4923 Shift along axis 6.70224576 
    4924  
    4925 
    4926 > select add #10
    4927 
    4928 2 models selected 
    4929 
    4930 > view matrix models
    4931 > #10,-0.96568,0.16527,-0.20039,392.73,0.18193,0.98098,-0.067662,-24.382,0.1854,-0.1018,-0.97738,358.48
    4932 
    4933 > ui mousemode right "translate selected models"
    4934 
    4935 > view matrix models
    4936 > #10,-0.96568,0.16527,-0.20039,389.82,0.18193,0.98098,-0.067662,-22.699,0.1854,-0.1018,-0.97738,359.38
    4937 
    4938 > select subtract #10
    4939 
    4940 Nothing selected 
    4941 
    4942 > fitmap #7 inMap #10
    4943 
    4944 Fit molecule RFXATPase_state1_2.98A-1.pdb (#7) to map
    4945 J276_003_volume_map_sharp.mrc (#10) using 41723 atoms 
    4946 average map value = 0.1675, steps = 388 
    4947 shifted from previous position = 5.7 
    4948 rotated from previous position = 10.9 degrees 
    4949 atoms outside contour = 26445, contour level = 0.11631 
    4950  
    4951 Position of RFXATPase_state1_2.98A-1.pdb (#7) relative to
    4952 J276_003_volume_map_sharp.mrc (#10) coordinates: 
    4953 Matrix rotation and translation 
    4954 0.98574956 0.16765026 0.01382779 -27.67300286 
    4955 0.16781986 -0.98574247 -0.01217687 343.80660039 
    4956 0.01158918 0.01432392 -0.99983025 368.53685588 
    4957 Axis 0.99643086 0.08417165 0.00637725 
    4958 Axis point 0.00000000 171.84256163 185.50305705 
    4959 Rotation angle (degrees) 179.23806648 
    4960 Shift along axis 3.71478754 
    4961  
    4962 
    4963 > save /Users/wujingyi/Downloads/rfxATPase_withoutADP_F1.mrc models #10
    4964 
    4965 > color #10 #b2b2ff53 models
    4966 
    4967 > color #10 #b2b2ff54 models
    4968 
    4969 > select add #7
    4970 
    4971 41723 atoms, 42367 bonds, 9 pseudobonds, 5426 residues, 2 models selected 
    4972 
    4973 > show sel atoms
    4974 
    4975 > style sel stick
    4976 
    4977 Changed 41723 atom styles 
    4978 
    4979 > ui mousemode right select
    4980 
    4981 > select clear
    4982 
    4983 Drag select of 18 atoms, 10 residues, 18 bonds, 10
    4984 J276_003_volume_map_sharp.mrc 
    4985 
    4986 > volume #10 color #b2b2ff
    4987 
    4988 > select clear
    4989 
    4990 > close #10
    4991 
    4992 > close #9
    4993 
    4994 > close #8
    4995 
    4996 > close #1
    4997 
    4998 > hide #!7 models
    4999 
    5000 > show #!6 models
    5001 
    5002 > show #!5 models
    5003 
    5004 > show #!4 models
    5005 
    5006 > show #!3 models
    5007 
    5008 > show #!2 models
    5009 
    5010 > open "/Volumes/暴躁的喷火龙/Rfx ATPase 相关/RFX ATPase 结构/RfxATP_state_1_Fo-1.pdb"
    5011 
    5012 Chain information for RfxATP_state_1_Fo-1.pdb #1 
    5013 --- 
    5014 Chain | Description 
    5015 H L O P | No description available 
    5016 I | No description available 
    5017 J K M N | No description available 
    5018 Q | No description available 
    5019 T Z | No description available 
    5020 U X | No description available 
    5021 V Y | No description available 
    5022  
    5023 4 atoms have alternate locations. Control/examine alternate locations with
    5024 Altloc Explorer [start tool...] or the altlocs command. 
    5025 
    5026 > hide #!1-6 atoms
    5027 
    5028 > show #!1-6 cartoons
    5029 
    5030 > select add #3
    5031 
    5032 11147 atoms, 11365 bonds, 2 pseudobonds, 1481 residues, 2 models selected 
    5033 
    5034 > hide target m
    5035 
    5036 > select subtract #3
    5037 
    5038 16 models selected 
    5039 
    5040 > select add #1
    5041 
    5042 11147 atoms, 11365 bonds, 2 pseudobonds, 1481 residues, 2 models selected 
    5043 
    5044 > show #!1 models
    5045 
    5046 > show sel surfaces
    5047 
    5048 > hide sel surfaces
    5049 
    5050 > select subtract #1.2
    5051 
    5052 10597 atoms, 10807 bonds, 2 pseudobonds, 1405 residues, 18 models selected 
    5053 
    5054 > select subtract #1.3
    5055 
    5056 10074 atoms, 10276 bonds, 2 pseudobonds, 1332 residues, 17 models selected 
    5057 
    5058 > select subtract #1.4
    5059 
    5060 9532 atoms, 9726 bonds, 2 pseudobonds, 1257 residues, 16 models selected 
    5061 
    5062 > select subtract #1.5
    5063 
    5064 8990 atoms, 9176 bonds, 2 pseudobonds, 1182 residues, 15 models selected 
    5065 
    5066 > select subtract #1.6
    5067 
    5068 8440 atoms, 8618 bonds, 2 pseudobonds, 1106 residues, 14 models selected 
    5069 
    5070 > select subtract #1.7
    5071 
    5072 7898 atoms, 8068 bonds, 2 pseudobonds, 1031 residues, 13 models selected 
    5073 
    5074 > select subtract #1.8
    5075 
    5076 7356 atoms, 7518 bonds, 2 pseudobonds, 956 residues, 12 models selected 
    5077 
    5078 > select subtract #1.9
    5079 
    5080 6806 atoms, 6960 bonds, 2 pseudobonds, 880 residues, 11 models selected 
    5081 
    5082 > select add #1
    5083 
    5084 11147 atoms, 11365 bonds, 2 pseudobonds, 1481 residues, 10 models selected 
    5085 
    5086 > select subtract #1.1
    5087 
    5088 11147 atoms, 11365 bonds, 1481 residues, 17 models selected 
    5089 
    5090 > select subtract #1.12
    5091 
    5092 8915 atoms, 9078 bonds, 1190 residues, 17 models selected 
    5093 
    5094 > select subtract #1.13
    5095 
    5096 8592 atoms, 8748 bonds, 1152 residues, 16 models selected 
    5097 
    5098 > select subtract #1.14
    5099 
    5100 8286 atoms, 8435 bonds, 1116 residues, 15 models selected 
    5101 
    5102 > select subtract #1.15
    5103 
    5104 7963 atoms, 8105 bonds, 1078 residues, 14 models selected 
    5105 
    5106 > select subtract #1.16
    5107 
    5108 7657 atoms, 7792 bonds, 1042 residues, 13 models selected 
    5109 
    5110 > select subtract #1.17
    5111 
    5112 5425 atoms, 5505 bonds, 751 residues, 12 models selected 
    5113 
    5114 > hide sel cartoons
    5115 
    5116 > ui tool show "Show Sequence Viewer"
    5117 
    5118 [Repeated 1 time(s)]
    5119 
    5120 > close #3
    5121 
    5122 > ui tool show "Show Sequence Viewer"
    5123 
    5124 > close #7
    5125 
    5126 > ui tool show "Show Sequence Viewer"
    5127 
    5128 Cell requested for row 0 is out of bounds for table with 22 rows! Resizing
    5129 table model. 
    5130 
    5131 > ui tool show "Show Sequence Viewer"
    5132 
    5133 > sequence chain #1/H #1/L #1/O #1/P
    5134 
    5135 Alignment identifier is 1 
    5136 
    5137 > sequence chain #1/I
    5138 
    5139 Alignment identifier is 1/I 
    5140 
    5141 > sequence chain #1/J #1/K #1/M #1/N
    5142 
    5143 Alignment identifier is 2 
    5144 
    5145 > sequence chain #1/Q
    5146 
    5147 Alignment identifier is 1/Q 
    5148 
    5149 > select #1/J-K,M-N:59
    5150 
    5151 36 atoms, 32 bonds, 4 residues, 1 model selected 
    5152 
    5153 > select #1/J-K,M-N:59
    5154 
    5155 36 atoms, 32 bonds, 4 residues, 1 model selected 
    5156 
    5157 > show sel atoms
    5158 
    5159 > style sel stick
    5160 
    5161 Changed 36 atom styles 
    5162 
    5163 > select #1/Q:59
    5164 
    5165 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5166 
    5167 > select #1/Q:59
    5168 
    5169 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5170 
    5171 > show sel atoms
    5172 
    5173 > style sel stick
    5174 
    5175 Changed 9 atom styles 
    5176 
    5177 > select #1/H,L,O-P:59
    5178 
    5179 36 atoms, 32 bonds, 4 residues, 1 model selected 
    5180 
    5181 > select #1/H,L,O-P:59
    5182 
    5183 36 atoms, 32 bonds, 4 residues, 1 model selected 
    5184 
    5185 > show sel atoms
    5186 
    5187 > style sel stick
    5188 
    5189 Changed 36 atom styles 
    5190 
    5191 > select #1/I:59
    5192 
    5193 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5194 
    5195 > select #1/I:59
    5196 
    5197 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5198 
    5199 > show sel atoms
    5200 
    5201 > style sel stick
    5202 
    5203 Changed 9 atom styles 
    5204 
    5205 > select #1/H,L,O-P:59
    5206 
    5207 36 atoms, 32 bonds, 4 residues, 1 model selected 
    5208 
    5209 > select #1/H,L,O-P:59
    5210 
    5211 36 atoms, 32 bonds, 4 residues, 1 model selected 
    5212 
    5213 > color (#!1 & sel) byhetero
    5214 
    5215 > select #1/I:59
    5216 
    5217 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5218 
    5219 > select #1/I:59
    5220 
    5221 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5222 
    5223 > color (#!1 & sel) byhetero
    5224 
    5225 > select #1/J-K,M-N:59
    5226 
    5227 36 atoms, 32 bonds, 4 residues, 1 model selected 
    5228 
    5229 > select #1/J-K,M-N:59
    5230 
    5231 36 atoms, 32 bonds, 4 residues, 1 model selected 
    5232 
    5233 > color (#!1 & sel) byhetero
    5234 
    5235 > select #1/Q:59
    5236 
    5237 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5238 
    5239 > select #1/Q:59
    5240 
    5241 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5242 
    5243 > color (#!1 & sel) byhetero
    5244 
    5245 > show #!4 models
    5246 
    5247 > show #!5 models
    5248 
    5249 > show #!6 models
    5250 
    5251 > show #!2 models
    5252 
    5253 > select add #4
    5254 
    5255 6397 atoms, 5064 bonds, 6389 residues, 3 models selected 
    5256 
    5257 > select add #2
    5258 
    5259 13627 atoms, 10537 bonds, 13619 residues, 8 models selected 
    5260 
    5261 > select add #5
    5262 
    5263 20718 atoms, 15835 bonds, 20710 residues, 13 models selected 
    5264 
    5265 > select add #6
    5266 
    5267 26408 atoms, 20451 bonds, 26400 residues, 18 models selected 
    5268 
    5269 > show sel surfaces
    5270 
    5271 > select clear
    5272 
    5273 Drag select of RfxATP_state_1_Fo-1.pdb_Q SES surface, 934 of 83818 triangles,
    5274 9 atoms, 8 bonds 
    5275 
    5276 > hide sel surfaces
    5277 
    5278 > close #1
    5279 
    5280 > open "/Volumes/暴躁的喷火龙/Rfx ATPase 相关/RFX ATPase 结构/RfxATP_state_1_Fo-2.pdb"
    5281 
    5282 Chain information for RfxATP_state_1_Fo-2.pdb #1 
    5283 --- 
    5284 Chain | Description 
    5285 H L O P | No description available 
    5286 I | No description available 
    5287 J K M N | No description available 
    5288 Q | No description available 
    5289 T Z | No description available 
    5290 U X | No description available 
    5291 V Y | No description available 
    5292  
    5293 4 atoms have alternate locations. Control/examine alternate locations with
    5294 Altloc Explorer [start tool...] or the altlocs command. 
    5295 
    5296 > hide atoms
    5297 
    5298 > show cartoons
    5299 
    5300 > select add #1
    5301 
    5302 11147 atoms, 11365 bonds, 2 pseudobonds, 1481 residues, 2 models selected 
    5303 
    5304 > show sel surfaces
    5305 
    5306 > hide sel surfaces
    5307 
    5308 > select subtract #1.1
    5309 
    5310 11147 atoms, 11365 bonds, 1481 residues, 17 models selected 
    5311 
    5312 > select subtract #1.17
    5313 
    5314 8915 atoms, 9078 bonds, 1190 residues, 17 models selected 
    5315 
    5316 > select subtract #1.16
    5317 
    5318 8609 atoms, 8765 bonds, 1154 residues, 16 models selected 
    5319 
    5320 > select subtract #1.15
    5321 
    5322 8286 atoms, 8435 bonds, 1116 residues, 15 models selected 
    5323 
    5324 > select subtract #1.14
    5325 
    5326 7980 atoms, 8122 bonds, 1080 residues, 14 models selected 
    5327 
    5328 > select subtract #1.13
    5329 
    5330 7657 atoms, 7792 bonds, 1042 residues, 13 models selected 
    5331 
    5332 > hide sel cartoons
    5333 
    5334 > select subtract #1.12
    5335 
    5336 5425 atoms, 5505 bonds, 751 residues, 12 models selected 
    5337 
    5338 > hide sel cartoons
    5339 
    5340 > select add #1.12
    5341 
    5342 7657 atoms, 5505 bonds, 1042 residues, 11 models selected 
    5343 
    5344 > select subtract #1.12
    5345 
    5346 5425 atoms, 5505 bonds, 751 residues, 12 models selected 
    5347 
    5348 > select add #1
    5349 
    5350 11147 atoms, 11365 bonds, 2 pseudobonds, 1481 residues, 12 models selected 
    5351 
    5352 > select subtract #1
    5353 
    5354 16 models selected 
    5355 
    5356 > select add #1.12
    5357 
    5358 2232 atoms, 291 residues, 1 model selected 
    5359 
    5360 > select add #1.17
    5361 
    5362 4464 atoms, 582 residues, 2 models selected 
    5363 
    5364 > show sel cartoons
    5365 
    5366 > select subtract #1.12
    5367 
    5368 2232 atoms, 291 residues, 3 models selected 
    5369 
    5370 > select subtract #1.17
    5371 
    5372 1 model selected 
    5373 
    5374 > select add #1.16
    5375 
    5376 306 atoms, 36 residues, 1 model selected 
    5377 
    5378 > select add #1.15
    5379 
    5380 629 atoms, 74 residues, 2 models selected 
    5381 
    5382 > select add #1.13
    5383 
    5384 952 atoms, 112 residues, 3 models selected 
    5385 
    5386 > select add #1.14
    5387 
    5388 1258 atoms, 148 residues, 4 models selected 
    5389 
    5390 > hide sel cartoons
    5391 
    5392 > select add #1
    5393 
    5394 11147 atoms, 11365 bonds, 2 pseudobonds, 1481 residues, 6 models selected 
    5395 
    5396 > select subtract #1
    5397 
    5398 16 models selected 
    5399 
    5400 > ui tool show "Show Sequence Viewer"
    5401 
    5402 > sequence chain #1/H #1/L #1/O #1/P
    5403 
    5404 Alignment identifier is 1 
    5405 
    5406 > sequence chain #1/I
    5407 
    5408 Alignment identifier is 1/I 
    5409 
    5410 > sequence chain #1/J #1/K #1/M #1/N
    5411 
    5412 Alignment identifier is 2 
    5413 
    5414 > sequence chain #1/Q
    5415 
    5416 Alignment identifier is 1/Q 
    5417 
    5418 > select #1/Q:59
    5419 
    5420 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5421 
    5422 > select #1/Q:59
    5423 
    5424 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5425 
    5426 > show sel cartoons
    5427 
    5428 > hide sel cartoons
    5429 
    5430 > show sel atoms
    5431 
    5432 > style sel stick
    5433 
    5434 Changed 9 atom styles 
    5435 
    5436 > color (#!1 & sel) byelement
    5437 
    5438 > select #1/J-K,M-N:59
    5439 
    5440 36 atoms, 32 bonds, 4 residues, 1 model selected 
    5441 
    5442 > select #1/J-K,M-N:59
    5443 
    5444 36 atoms, 32 bonds, 4 residues, 1 model selected 
    5445 
    5446 > show sel atoms
    5447 
    5448 > style sel stick
    5449 
    5450 Changed 36 atom styles 
    5451 
    5452 > color (#!1 & sel) byhetero
    5453 
    5454 > select #1/I:59
    5455 
    5456 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5457 
    5458 > select #1/I:59
    5459 
    5460 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5461 
    5462 > show sel atoms
    5463 
    5464 > style sel stick
    5465 
    5466 Changed 9 atom styles 
    5467 
    5468 > color (#!1 & sel) byhetero
    5469 
    5470 > select #1/H,L,O-P:59
    5471 
    5472 36 atoms, 32 bonds, 4 residues, 1 model selected 
    5473 
    5474 > select #1/H,L,O-P:59
    5475 
    5476 36 atoms, 32 bonds, 4 residues, 1 model selected 
    5477 
    5478 > color (#!1 & sel) byhetero
    5479 
    5480 > show sel atoms
    5481 
    5482 > style sel stick
    5483 
    5484 Changed 36 atom styles 
    5485 
    5486 > select clear
    5487 
    5488 > open "/Volumes/暴躁的喷火龙/Rfx ATPase 相关/RFX ATPase
    5489 > 结构/RFXATPase_state1_2.98A-1.pdb"
    5490 
    5491 Chain information for RFXATPase_state1_2.98A-1.pdb #3 
    5492 --- 
    5493 Chain | Description 
    5494 A | No description available 
    5495 B | No description available 
    5496 C | No description available 
    5497 D | No description available 
    5498 E | No description available 
    5499 F | No description available 
    5500 G | No description available 
    5501 H L O P | No description available 
    5502 I | No description available 
    5503 J K M N | No description available 
    5504 Q | No description available 
    5505 R | No description available 
    5506 S | No description available 
    5507 T Z | No description available 
    5508 U X | No description available 
    5509 V | No description available 
    5510 W | No description available 
    5511 Y | No description available 
    5512  
    5513 4 atoms have alternate locations. Control/examine alternate locations with
    5514 Altloc Explorer [start tool...] or the altlocs command. 
    5515 
    5516 > hide atoms
    5517 
    5518 > show cartoons
    5519 
    5520 > hide #!3 models
    5521 
    5522 > select add #1.2
    5523 
    5524 550 atoms, 76 residues, 1 model selected 
    5525 
    5526 > select add #1.3
    5527 
    5528 1073 atoms, 149 residues, 2 models selected 
    5529 
    5530 > select add #1.4
    5531 
    5532 1615 atoms, 224 residues, 3 models selected 
    5533 
    5534 > select add #1.5
    5535 
    5536 2157 atoms, 299 residues, 4 models selected 
    5537 
    5538 > select add #1.6
    5539 
    5540 2707 atoms, 375 residues, 5 models selected 
    5541 
    5542 > select add #1.7
    5543 
    5544 3249 atoms, 450 residues, 6 models selected 
    5545 
    5546 > select add #1.8
    5547 
    5548 3791 atoms, 525 residues, 7 models selected 
    5549 
    5550 > select add #1.9
    5551 
    5552 4341 atoms, 601 residues, 8 models selected 
    5553 
    5554 > select add #1.10
    5555 
    5556 4891 atoms, 677 residues, 9 models selected 
    5557 
    5558 > select add #1.11
    5559 
    5560 5425 atoms, 751 residues, 10 models selected 
    5561 
    5562 > hide sel cartoons
    5563 
    5564 > select #1/H,L,O-P:59
    5565 
    5566 36 atoms, 32 bonds, 4 residues, 1 model selected 
    5567 
    5568 > select #1/H,L,O-P:59
    5569 
    5570 36 atoms, 32 bonds, 4 residues, 1 model selected 
    5571 
    5572 > show sel atoms
    5573 
    5574 > select #1/I:59
    5575 
    5576 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5577 
    5578 > show sel atoms
    5579 
    5580 > select #1/J-K,M-N:59
    5581 
    5582 36 atoms, 32 bonds, 4 residues, 1 model selected 
    5583 
    5584 > select #1/J-K,M-N:59
    5585 
    5586 36 atoms, 32 bonds, 4 residues, 1 model selected 
    5587 
    5588 > show sel atoms
    5589 
    5590 > select #1/Q:59
    5591 
    5592 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5593 
    5594 > select #1/Q:59
    5595 
    5596 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5597 
    5598 > show sel cartoons
    5599 
    5600 > hide sel cartoons
    5601 
    5602 > show sel atoms
    5603 
    5604 > select clear
    5605 
    5606 > open "/Volumes/暴躁的喷火龙/Rfx ATPase 相关/RFX ATPase 结构/RfxATP_state_1_Fo-3.pdb"
    5607 
    5608 Chain information for RfxATP_state_1_Fo-3.pdb #7 
    5609 --- 
    5610 Chain | Description 
    5611 H L O P | No description available 
    5612 I | No description available 
    5613 J K M N | No description available 
    5614 Q | No description available 
    5615 T Z | No description available 
    5616 U X | No description available 
    5617 V Y | No description available 
    5618  
    5619 4 atoms have alternate locations. Control/examine alternate locations with
    5620 Altloc Explorer [start tool...] or the altlocs command. 
    5621 
    5622 > hide #!1-2,4-7 atoms
    5623 
    5624 > show #!1-2,4-7 cartoons
    5625 
    5626 > show #!1-2,4-7 surfaces
    5627 
    5628 > hide #!1-2,4-7 surfaces
    5629 
    5630 > select add #7.2
    5631 
    5632 550 atoms, 76 residues, 1 model selected 
    5633 
    5634 > select add #7.3
    5635 
    5636 1073 atoms, 149 residues, 2 models selected 
    5637 
    5638 > select add #7.4
    5639 
    5640 1615 atoms, 224 residues, 3 models selected 
    5641 
    5642 > select add #7.5
    5643 
    5644 2157 atoms, 299 residues, 4 models selected 
    5645 
    5646 > select add #7.6
    5647 
    5648 2707 atoms, 375 residues, 5 models selected 
    5649 
    5650 > select add #7.7
    5651 
    5652 3249 atoms, 450 residues, 6 models selected 
    5653 
    5654 > select add #7.8
    5655 
    5656 3791 atoms, 525 residues, 7 models selected 
    5657 
    5658 > select add #7.9
    5659 
    5660 4341 atoms, 601 residues, 8 models selected 
    5661 
    5662 > select add #7.10
    5663 
    5664 4891 atoms, 677 residues, 9 models selected 
    5665 
    5666 > select add #7.11
    5667 
    5668 5425 atoms, 751 residues, 10 models selected 
    5669 
    5670 > hide sel cartoons
    5671 
    5672 [Repeated 1 time(s)]
    5673 
    5674 > hide #!1 models
    5675 
    5676 > ui tool show "Show Sequence Viewer"
    5677 
    5678 > sequence chain #1/H #1/L #1/O #1/P #3/H #3/L #3/O #3/P #7/H #7/L #7/O #7/P
    5679 
    5680 Alignment identifier is 3 
    5681 
    5682 > sequence chain #1/I #3/I #7/I
    5683 
    5684 Alignment identifier is 4 
    5685 
    5686 > sequence chain #1/J #1/K #1/M #1/N #3/J #3/K #3/M #3/N #7/J #7/K #7/M #7/N
    5687 
    5688 Alignment identifier is 5 
    5689 
    5690 > sequence chain #1/Q #3/Q #7/Q
    5691 
    5692 Alignment identifier is 6 
    5693 
    5694 > select #1/Q:59 #3/Q:59 #7/Q:59
    5695 
    5696 27 atoms, 24 bonds, 3 residues, 3 models selected 
    5697 
    5698 > select #1/Q:59 #3/Q:59 #7/Q:59
    5699 
    5700 27 atoms, 24 bonds, 3 residues, 3 models selected 
    5701 6 [ID: 6] region 3 chains [58] RMSD: 0.294 
    5702  
    5703 
    5704 > show sel & #!7 atoms
    5705 
    5706 > style sel & #!7 stick
    5707 
    5708 Changed 9 atom styles 
    5709 
    5710 > color (#!7 & sel) byhetero
    5711 
    5712 > select #1/J-K,M-N:59 #3/J-K,M-N:59 #7/J-K,M-N:59
    5713 
    5714 108 atoms, 96 bonds, 12 residues, 3 models selected 
    5715 
    5716 > select #1/J-K,M-N:59-60 #3/J-K,M-N:59-60 #7/J-K,M-N:59-60
    5717 
    5718 168 atoms, 156 bonds, 24 residues, 3 models selected 
    5719 5 [ID: 5] region 12 chains [58-59] RMSD: 0.425 
    5720  
    5721 
    5722 > select #1/J-K,M-N:59 #3/J-K,M-N:59 #7/J-K,M-N:59
    5723 
    5724 108 atoms, 96 bonds, 12 residues, 3 models selected 
    5725 
    5726 > select #1/J-K,M-N:59 #3/J-K,M-N:59 #7/J-K,M-N:59
    5727 
    5728 108 atoms, 96 bonds, 12 residues, 3 models selected 
    5729 5 [ID: 5] region 12 chains [58] RMSD: 0.411 
    5730  
    5731 
    5732 > color (#!7 & sel) byelement
    5733 
    5734 > color (#!7 & sel) byhetero
    5735 
    5736 > show sel & #!7 atoms
    5737 
    5738 > style sel & #!7 stick
    5739 
    5740 Changed 36 atom styles 
    5741 
    5742 > select #1/I:59 #3/I:59 #7/I:59
    5743 
    5744 27 atoms, 24 bonds, 3 residues, 3 models selected 
    5745 
    5746 > color (#!7 & sel) byhetero
    5747 
    5748 > select #1/H,L,O-P:59 #3/H,L,O-P:59 #7/H,L,O-P:59
    5749 
    5750 108 atoms, 96 bonds, 12 residues, 3 models selected 
    5751 
    5752 > select #1/H,L,O-P:59 #3/H,L,O-P:59 #7/H,L,O-P:59
    5753 
    5754 108 atoms, 96 bonds, 12 residues, 3 models selected 
    5755 3 [ID: 3] region 12 chains [58] RMSD: 0.353 
    5756  
    5757 
    5758 > color (#!7 & sel) byhetero
    5759 
    5760 > show sel & #!7 atoms
    5761 
    5762 > style sel & #!7 stick
    5763 
    5764 Changed 36 atom styles 
    5765 
    5766 > select clear
    5767 
    5768 > select #1/I:59 #3/I:59 #7/I:59
    5769 
    5770 27 atoms, 24 bonds, 3 residues, 3 models selected 
    5771 
    5772 > select #1/I:59 #3/I:59 #7/I:59
    5773 
    5774 27 atoms, 24 bonds, 3 residues, 3 models selected 
    5775 4 [ID: 4] region 3 chains [58] RMSD: 0.292 
    5776  
    5777 
    5778 > show sel & #!7 atoms
    5779 
    5780 > style sel & #!7 stick
    5781 
    5782 Changed 9 atom styles 
    5783 
    5784 > color (#!7 & sel) byhetero
    5785 
    5786 > select clear
    5787 
    5788 > select add #7.12
    5789 
    5790 2232 atoms, 291 residues, 1 model selected 
    5791 
    5792 > select add #7.17
    5793 
    5794 4464 atoms, 582 residues, 2 models selected 
    5795 
    5796 > color (#!7 & sel) forest green
    5797 
    5798 > select add #7
    5799 
    5800 11147 atoms, 11365 bonds, 2 pseudobonds, 1481 residues, 4 models selected 
    5801 
    5802 > select subtract #7.13
    5803 
    5804 10824 atoms, 11035 bonds, 2 pseudobonds, 1443 residues, 18 models selected 
    5805 
    5806 > select subtract #7.15
    5807 
    5808 10501 atoms, 10705 bonds, 2 pseudobonds, 1405 residues, 17 models selected 
    5809 
    5810 > select subtract #7.14
    5811 
    5812 10195 atoms, 10392 bonds, 2 pseudobonds, 1369 residues, 16 models selected 
    5813 
    5814 > select subtract #7.16
    5815 
    5816 9889 atoms, 10079 bonds, 2 pseudobonds, 1333 residues, 15 models selected 
    5817 
    5818 > select subtract #7.17
    5819 
    5820 7657 atoms, 7792 bonds, 1 pseudobond, 1042 residues, 14 models selected 
    5821 
    5822 > select subtract #7.12
    5823 
    5824 5425 atoms, 5505 bonds, 751 residues, 12 models selected 
    5825 
    5826 > color (#!7 & sel) #f5ccdcff
    5827 
    5828 > color (#!7 & sel) byhetero
    5829 
    5830 > select clear
    5831 
    5832 > hide #7.15 models
    5833 
    5834 > hide #7.12 models
    5835 
    5836 > select add #7.15
    5837 
    5838 323 atoms, 38 residues, 1 model selected 
    5839 
    5840 > select add #7.13
    5841 
    5842 646 atoms, 76 residues, 2 models selected 
    5843 
    5844 > hide sel cartoons
    5845 
    5846 > select add #7.16
    5847 
    5848 952 atoms, 112 residues, 3 models selected 
    5849 
    5850 > select add #7.14
    5851 
    5852 1258 atoms, 148 residues, 4 models selected 
    5853 
    5854 > hide sel cartoons
    5855 
    5856 > select clear
    5857 
    5858 > volume flip #10
    5859 
    5860 > view
    5861 
    5862 > cartoon style #2,4-6#7.1-11,13-14,16-17#!7 modeHelix tube sides 20
    5863 
    5864 > view
    5865 
    5866 > show #!1 models
    5867 
    5868 > hide #!1 models
    5869 
    5870 > select add #2
    5871 
    5872 7230 atoms, 5473 bonds, 7230 residues, 1 model selected 
    5873 
    5874 > select add #4
    5875 
    5876 13618 atoms, 10529 bonds, 13618 residues, 6 models selected 
    5877 
    5878 > select add #5
    5879 
    5880 20709 atoms, 15827 bonds, 20709 residues, 11 models selected 
    5881 
    5882 > select add #6
    5883 
    5884 26399 atoms, 20443 bonds, 26399 residues, 16 models selected 
    5885 
    5886 > show sel surfaces
    5887 
    5888 > select subtract #6
    5889 
    5890 20709 atoms, 15827 bonds, 20709 residues, 18 models selected 
    5891 
    5892 > select subtract #4
    5893 
    5894 14321 atoms, 10771 bonds, 14321 residues, 14 models selected 
    5895 
    5896 > color (#!2,5 & sel) #f2d6d7ff
    5897 
    5898 > color (#!2,5 & sel) #f2d2d3ff
    5899 
    5900 > color (#!2,5 & sel) #f2cbcdff
    5901 
    5902 > color (#!2,5 & sel) #f2c3c8ff
    5903 
    5904 > color (#!2,5 & sel) #f2b8c5ff
    5905 
    5906 > color (#!2,5 & sel) #f2b2c6ff
    5907 
    5908 > color (#!2,5 & sel) #f2aec7ff
    5909 
    5910 > color (#!2,5 & sel) #f2a9c7ff
    5911 
    5912 > color (#!2,5 & sel) #f2a5c7ff
    5913 
    5914 > color (#!2,5 & sel) #f2a2c9ff
    5915 
    5916 > color (#!2,5 & sel) #f2a0caff
    5917 
    5918 > color (#!2,5 & sel) #f29fc9ff
    5919 
    5920 > color (#!2,5 & sel) #f2a0caff
    5921 
    5922 > color (#!2,5 & sel) #f2a0cbff
    5923 
    5924 > color (#!2,5 & sel) #f2a0ccff
    5925 
    5926 > color (#!2,5 & sel) #f2a1ccff
    5927 
    5928 > color (#!2,5 & sel) #f2a2cdff
    5929 
    5930 > color (#!2,5 & sel) #f2a5d2ff
    5931 
    5932 > color (#!2,5 & sel) #f2a6d5ff
    5933 
    5934 > color (#!2,5 & sel) #f2a9d9ff
    5935 
    5936 > color (#!2,5 & sel) #f2abddff
    5937 
    5938 > color (#!2,5 & sel) #f2aee3ff
    5939 
    5940 > color (#!2,5 & sel) #f2b2edff
    5941 
    5942 > color (#!2,5 & sel) #efb4f2ff
    5943 
    5944 > color (#!2,5 & sel) #e5b3f2ff
    5945 
    5946 > color (#!2,5 & sel) #dcb1f2ff
    5947 
    5948 > color (#!2,5 & sel) #d6aff2ff
    5949 
    5950 > color (#!2,5 & sel) #d4aff2ff
    5951 
    5952 > color (#!2,5 & sel) #d5aff2ff
    5953 
    5954 > color (#!2,5 & sel) #dea2f2ff
    5955 
    5956 > color (#!2,5 & sel) #e29cf2ff
    5957 
    5958 > color (#!2,5 & sel) #e29bf2ff
    5959 
    5960 > color (#!2,5 & sel) #e39bf2ff
    5961 
    5962 > color (#!2,5 & sel) #e49bf2ff
    5963 
    5964 > color (#!2,5 & sel) #e59bf2ff
    5965 
    5966 > color (#!2,5 & sel) #e89bf2ff
    5967 
    5968 > color (#!2,5 & sel) #ea9cf2ff
    5969 
    5970 > color (#!2,5 & sel) #ed9cf2ff
    5971 
    5972 > color (#!2,5 & sel) #f09cf2ff
    5973 
    5974 > color (#!2,5 & sel) #f29cf2ff
    5975 
    5976 > color (#!2,5 & sel) #f29cf0ff
    5977 
    5978 > color (#!2,5 & sel) #f29cefff
    5979 
    5980 [Repeated 1 time(s)]
    5981 
    5982 > color (#!2,5 & sel) #f29ceeff
    5983 
    5984 > color (#!2,5 & sel) #f29cebff
    5985 
    5986 > color (#!2,5 & sel) #f29ce5ff
    5987 
    5988 > color (#!2,5 & sel) #f299dbff
    5989 
    5990 > color (#!2,5 & sel) #f295d2ff
    5991 
    5992 > color (#!2,5 & sel) #f290caff
    5993 
    5994 > color (#!2,5 & sel) #f286bcff
    5995 
    5996 > color (#!2,5 & sel) #f284b8ff
    5997 
    5998 > color (#!2,5 & sel) #f284b7ff
    5999 
    6000 > color (#!2,5 & sel) #f283b7ff
    6001 
    6002 > color (#!2,5 & sel) #f27fb0ff
    6003 
    6004 > color (#!2,5 & sel) #f27eadff
    6005 
    6006 [Repeated 1 time(s)]
    6007 
    6008 > color (#!2,5 & sel) #f27ca9ff
    6009 
    6010 > color (#!2,5 & sel) #f2779dff
    6011 
    6012 > color (#!2,5 & sel) #f27498ff
    6013 
    6014 [Repeated 1 time(s)]
    6015 
    6016 > color (#!2,5 & sel) #f26e91ff
    6017 
    6018 > color (#!2,5 & sel) #f26a8eff
    6019 
    6020 > color (#!2,5 & sel) #f2678bff
    6021 
    6022 > color (#!2,5 & sel) #f26489ff
    6023 
    6024 > color (#!2,5 & sel) #f26388ff
    6025 
    6026 > color (#!2,5 & sel) #f26287ff
    6027 
    6028 > color (#!2,5 & sel) #f26388ff
    6029 
    6030 > color (#!2,5 & sel) #f26589ff
    6031 
    6032 > color (#!2,5 & sel) #f2708bff
    6033 
    6034 > color (#!2,5 & sel) #f27a8eff
    6035 
    6036 > color (#!2,5 & sel) #f28091ff
    6037 
    6038 > color (#!2,5 & sel) #f28494ff
    6039 
    6040 > color (#!2,5 & sel) #f28796ff
    6041 
    6042 > color (#!2,5 & sel) #f28795ff
    6043 
    6044 > color (#!2,5 & sel) #f28796ff
    6045 
    6046 > color (#!2,5 & sel) #f28596ff
    6047 
    6048 > color (#!2,5 & sel) #f28497ff
    6049 
    6050 > color (#!2,5 & sel) #f2819bff
    6051 
    6052 > color (#!2,5 & sel) #f27c9fff
    6053 
    6054 > color (#!2,5 & sel) #f27ba1ff
    6055 
    6056 > color (#!2,5 & sel) #f27ca2ff
    6057 
    6058 > color (#!2,5 & sel) #f27da3ff
    6059 
    6060 > color (#!2,5 & sel) #f27ca3ff
    6061 
    6062 > color (#!2,5 & sel) #f27da4ff
    6063 
    6064 > color (#!2,5 & sel) #f27ea5ff
    6065 
    6066 > color (#!2,5 & sel) #f27da5ff
    6067 
    6068 > select clear
    6069 
    6070 > select add #1
    6071 
    6072 11147 atoms, 11365 bonds, 2 pseudobonds, 1481 residues, 2 models selected 
    6073 
    6074 > select subtract #1
    6075 
    6076 16 models selected 
    6077 
    6078 > select add #6
    6079 
    6080 5690 atoms, 4616 bonds, 5690 residues, 1 model selected 
    6081 
    6082 > select add #4
    6083 
    6084 12078 atoms, 9672 bonds, 12078 residues, 5 models selected 
    6085 
    6086 > color (#!4,6 & sel) cornflower blue
    6087 
    6088 > select subtract #6
    6089 
    6090 6388 atoms, 5056 bonds, 6388 residues, 8 models selected 
    6091 
    6092 > select subtract #4
    6093 
    6094 4 models selected 
    6095 
    6096 > select add #5
    6097 
    6098 7091 atoms, 5298 bonds, 7091 residues, 1 model selected 
    6099 
    6100 > select add #2
    6101 
    6102 14321 atoms, 10771 bonds, 14321 residues, 6 models selected 
    6103 
    6104 > select subtract #5
    6105 
    6106 7230 atoms, 5473 bonds, 7230 residues, 9 models selected 
    6107 
    6108 > select subtract #2
    6109 
    6110 4 models selected 
    6111 
    6112 > color #2 #f27da581
    6113 
    6114 > color #2 #f27da580
    6115 
    6116 > color #5 #f27da580
    6117 
    6118 > color #6 #6495ed80
    6119 
    6120 > color #4 #6495ed7b
    6121 
    6122 > color #4 #6495ed7d
    6123 
    6124 > color #4 #6495ed80
    6125 
    6126 > lighting simple
    6127 
    6128 > lighting soft
    6129 
    6130 > lighting full
    6131 
    6132 > lighting flat
    6133 
    6134 > view
    6135 
    6136 > graphics silhouettes false
    6137 
    6138 > lighting shadows true intensity 0.5
    6139 
    6140 > lighting flat
    6141 
    6142 > graphics silhouettes false
    6143 
    6144 > graphics silhouettes true
    6145 
    6146 > lighting flat
    6147 
    6148 > graphics silhouettes false
    6149 
    6150 > lighting soft
    6151 
    6152 > graphics silhouettes true
    6153 
    6154 > lighting flat
    6155 
    6156 > ui tool show "Show Sequence Viewer"
    6157 
    6158 > sequence chain #1/T #1/Z #3/T #3/Z #7/T #7/Z
    6159 
    6160 Alignment identifier is 1 
    6161 
    6162 > select #1/T,Z:259 #3/T,Z:259 #7/T,Z:259
    6163 
    6164 66 atoms, 60 bonds, 6 residues, 3 models selected 
    6165 
    6166 > select #1/T,Z:259 #3/T,Z:259 #7/T,Z:259
    6167 
    6168 66 atoms, 60 bonds, 6 residues, 3 models selected 
    6169 1 [ID: 1] region 6 chains [235] RMSD: 0.547 
    6170  
    6171 
    6172 > show sel & #!7 atoms
    6173 
    6174 > style sel & #!7 stick
    6175 
    6176 Changed 22 atom styles 
    6177 
    6178 > color (#!7 & sel) byhetero
    6179 
    6180 > select clear
    6181 
    6182 > save /Users/wujingyi/1.cxs
    6183 
    6184 > view
    6185 
    6186 [Repeated 1 time(s)]
    6187 
    6188 > save
    6189 > /Users/wujingyi/Desktop/RfxATPase_figure/figure_4/Rfxatp_state1_hollow.cxs
    6190 
    6191 ——— End of log from Mon Aug 12 10:58:14 2024 ———
    6192 
    6193 opened ChimeraX session 
    6194 
    6195 > open "/Volumes/暴躁的喷火龙/Rfx ATPase 相关/RFX ATPase
    6196 > 结构/RfxATP_state_1_Fo-4-coot-0.pdb"
    6197 
    6198 Chain information for RfxATP_state_1_Fo-4-coot-0.pdb #8 
    6199 --- 
    6200 Chain | Description 
    6201 H L O P | No description available 
    6202 I | No description available 
    6203 J K M N | No description available 
    6204 Q | No description available 
    6205 T Z | No description available 
    6206 U X | No description available 
    6207 V Y | No description available 
    6208  
    6209 4 atoms have alternate locations. Control/examine alternate locations with
    6210 Altloc Explorer [start tool...] or the altlocs command. 
    6211 
    6212 > hide #!2,4-8 atoms
    6213 
    6214 > show #!2,4-8 cartoons
    6215 
    6216 > show #!2,4-8 surfaces
    6217 
    6218 > hide #!2,4-8 surfaces
    6219 
    6220 > hide #!7 models
    6221 
    6222 > select add #8.2
    6223 
    6224 550 atoms, 76 residues, 1 model selected 
    6225 
    6226 > select add #8
    6227 
    6228 11147 atoms, 11365 bonds, 2 pseudobonds, 1481 residues, 3 models selected 
    6229 
    6230 > select subtract #8.17
    6231 
    6232 8915 atoms, 9078 bonds, 1 pseudobond, 1190 residues, 18 models selected 
    6233 
    6234 > select subtract #8.12
    6235 
    6236 6683 atoms, 6791 bonds, 899 residues, 16 models selected 
    6237 
    6238 > select subtract #8.13
    6239 
    6240 6360 atoms, 6461 bonds, 861 residues, 15 models selected 
    6241 
    6242 > select subtract #8.14
    6243 
    6244 6054 atoms, 6148 bonds, 825 residues, 14 models selected 
    6245 
    6246 > select subtract #8.15
    6247 
    6248 5731 atoms, 5818 bonds, 787 residues, 13 models selected 
    6249 
    6250 > select subtract #8.16
    6251 
    6252 5425 atoms, 5505 bonds, 751 residues, 12 models selected 
    6253 
    6254 > color (#!8 & sel) #f5ccdcff
    6255 
    6256 > lighting soft
    6257 
    6258 > select add #8
    6259 
    6260 11147 atoms, 11365 bonds, 2 pseudobonds, 1481 residues, 12 models selected 
    6261 
    6262 > select subtract #8
    6263 
    6264 16 models selected 
    6265 
    6266 > select add #8.12
    6267 
    6268 2232 atoms, 291 residues, 1 model selected 
    6269 
    6270 > select add #8.17
    6271 
    6272 4464 atoms, 582 residues, 2 models selected 
    6273 
    6274 > color (#!8 & sel) forest green
    6275 
    6276 > select subtract #8.17
    6277 
    6278 2232 atoms, 291 residues, 3 models selected 
    6279 
    6280 > select subtract #8.12
    6281 
    6282 1 model selected 
    6283 
    6284 > select add #8.14
    6285 
    6286 306 atoms, 36 residues, 1 model selected 
    6287 
    6288 > select add #8.16
    6289 
    6290 612 atoms, 72 residues, 2 models selected 
    6291 
    6292 > color (#!8 & sel) #9e7bbaff
    6293 
    6294 > select subtract #8.14
    6295 
    6296 306 atoms, 36 residues, 3 models selected 
    6297 
    6298 > select subtract #8.16
    6299 
    6300 1 model selected 
    6301 
    6302 > select add #8.15
    6303 
    6304 323 atoms, 38 residues, 1 model selected 
    6305 
    6306 > select add #8.13
    6307 
    6308 646 atoms, 76 residues, 2 models selected 
    6309 
    6310 > color (#!8 & sel) #c5c5ecff
    6311 
    6312 > select subtract #8.13
    6313 
    6314 323 atoms, 38 residues, 3 models selected 
    6315 
    6316 > select subtract #8.15
    6317 
    6318 1 model selected 
    6319 
    6320 > select add #8.16
    6321 
    6322 306 atoms, 36 residues, 1 model selected 
    6323 
    6324 > select add #8.15
    6325 
    6326 629 atoms, 74 residues, 2 models selected 
    6327 
    6328 > select add #8.14
    6329 
    6330 935 atoms, 110 residues, 3 models selected 
    6331 
    6332 > select add #8.13
    6333 
    6334 1258 atoms, 148 residues, 4 models selected 
    6335 
    6336 > hide sel cartoons
    6337 
    6338 > select subtract #8.13
    6339 
    6340 935 atoms, 110 residues, 5 models selected 
    6341 
    6342 > select subtract #8.14
    6343 
    6344 629 atoms, 74 residues, 4 models selected 
    6345 
    6346 > select subtract #8.15
    6347 
    6348 306 atoms, 36 residues, 3 models selected 
    6349 
    6350 > select subtract #8.16
    6351 
    6352 1 model selected 
    6353 
    6354 > select add #2
    6355 
    6356 7230 atoms, 5473 bonds, 7230 residues, 1 model selected 
    6357 
    6358 > select add #4
    6359 
    6360 13618 atoms, 10529 bonds, 13618 residues, 6 models selected 
    6361 
    6362 > select add #5
    6363 
    6364 20709 atoms, 15827 bonds, 20709 residues, 11 models selected 
    6365 
    6366 > select add #6
    6367 
    6368 26399 atoms, 20443 bonds, 26399 residues, 16 models selected 
    6369 
    6370 > show sel surfaces
    6371 
    6372 > select subtract #4
    6373 
    6374 20011 atoms, 15387 bonds, 20011 residues, 18 models selected 
    6375 
    6376 > select subtract #5
    6377 
    6378 12920 atoms, 10089 bonds, 12920 residues, 13 models selected 
    6379 
    6380 > select subtract #6
    6381 
    6382 7230 atoms, 5473 bonds, 7230 residues, 8 models selected 
    6383 
    6384 > select subtract #2
    6385 
    6386 4 models selected 
    6387 
    6388 > select add #2
    6389 
    6390 7230 atoms, 5473 bonds, 7230 residues, 1 model selected 
    6391 
    6392 > select add #5
    6393 
    6394 14321 atoms, 10771 bonds, 14321 residues, 6 models selected 
    6395 
    6396 > color (#!2,5 & sel) #f2b8aeff
    6397 
    6398 [Repeated 1 time(s)]
    6399 
    6400 > color (#!2,5 & sel) #f2b8aeca
    6401 
    6402 > color (#!2,5 & sel) #f2b8aec5
    6403 
    6404 > color (#!2,5 & sel) #f2b8aea2
    6405 
    6406 > color (#!2,5 & sel) #f2b8ae92
    6407 
    6408 > color (#!2,5 & sel) #f2b8ae8f
    6409 
    6410 > color (#!2,5 & sel) #f2b8ae83
    6411 
    6412 > color (#!2,5 & sel) #f2b8ae80
    6413 
    6414 > color (#!2,5 & sel) #f2b8ae77
    6415 
    6416 > color (#!2,5 & sel) #f2b8ae75
    6417 
    6418 > color (#!2,5 & sel) #f2b8ae76
    6419 
    6420 > color (#!2,5 & sel) #f2b8ae7a
    6421 
    6422 > color (#!2,5 & sel) #f2b8ae7b
    6423 
    6424 > select subtract #5
    6425 
    6426 7230 atoms, 5473 bonds, 7230 residues, 9 models selected 
    6427 
    6428 > select subtract #2
    6429 
    6430 4 models selected 
    6431 
    6432 > select add #6
    6433 
    6434 5690 atoms, 4616 bonds, 5690 residues, 1 model selected 
    6435 
    6436 > select add #4
    6437 
    6438 12078 atoms, 9672 bonds, 12078 residues, 5 models selected 
    6439 
    6440 > color (#!4,6 & sel) #c2e5cf7b
    6441 
    6442 > select subtract #6
    6443 
    6444 6388 atoms, 5056 bonds, 6388 residues, 8 models selected 
    6445 
    6446 > select subtract #4
    6447 
    6448 4 models selected 
    6449 
    6450 > select add #5
    6451 
    6452 7091 atoms, 5298 bonds, 7091 residues, 1 model selected 
    6453 
    6454 > select add #2
    6455 
    6456 14321 atoms, 10771 bonds, 14321 residues, 6 models selected 
    6457 
    6458 > color (#!2,5 & sel) #efd6d17b
    6459 
    6460 [Repeated 1 time(s)]
    6461 
    6462 > color (#!2,5 & sel) #efd6d17c
    6463 
    6464 > color (#!2,5 & sel) #efd6d17f
    6465 
    6466 > select add #4
    6467 
    6468 20709 atoms, 15827 bonds, 20709 residues, 11 models selected 
    6469 
    6470 > select subtract #2
    6471 
    6472 13479 atoms, 10354 bonds, 13479 residues, 14 models selected 
    6473 
    6474 > select subtract #4
    6475 
    6476 7091 atoms, 5298 bonds, 7091 residues, 9 models selected 
    6477 
    6478 > select subtract #5
    6479 
    6480 4 models selected 
    6481 
    6482 > select add #6
    6483 
    6484 5690 atoms, 4616 bonds, 5690 residues, 1 model selected 
    6485 
    6486 > select add #4
    6487 
    6488 12078 atoms, 9672 bonds, 12078 residues, 5 models selected 
    6489 
    6490 > color (#!4,6 & sel) #bcc6dd7f
    6491 
    6492 > select subtract #6
    6493 
    6494 6388 atoms, 5056 bonds, 6388 residues, 8 models selected 
    6495 
    6496 > select subtract #4
    6497 
    6498 4 models selected 
    6499 
    6500 > undo
    6501 
    6502 > select subtract #6
    6503 
    6504 6388 atoms, 5056 bonds, 6388 residues, 8 models selected 
    6505 
    6506 > select subtract #4
    6507 
    6508 4 models selected 
    6509 
    6510 > select add #6
    6511 
    6512 5690 atoms, 4616 bonds, 5690 residues, 1 model selected 
    6513 
    6514 > select add #4
    6515 
    6516 12078 atoms, 9672 bonds, 12078 residues, 5 models selected 
    6517 
    6518 > color (#!4,6 & sel) #d5ebf07f
    6519 
    6520 > select subtract #6
    6521 
    6522 6388 atoms, 5056 bonds, 6388 residues, 8 models selected 
    6523 
    6524 > select subtract #4
    6525 
    6526 4 models selected 
    6527 
    6528 > select add #8.2
    6529 
    6530 550 atoms, 76 residues, 1 model selected 
    6531 
    6532 > select add #8.3
    6533 
    6534 1073 atoms, 149 residues, 2 models selected 
    6535 
    6536 > select add #8.4
    6537 
    6538 1615 atoms, 224 residues, 3 models selected 
    6539 
    6540 > select add #8.5
    6541 
    6542 2157 atoms, 299 residues, 4 models selected 
    6543 
    6544 > select add #8.6
    6545 
    6546 2707 atoms, 375 residues, 5 models selected 
    6547 
    6548 > select add #8.7
    6549 
    6550 3249 atoms, 450 residues, 6 models selected 
    6551 
    6552 > select add #8.8
    6553 
    6554 3791 atoms, 525 residues, 7 models selected 
    6555 
    6556 > select add #8.9
    6557 
    6558 4341 atoms, 601 residues, 8 models selected 
    6559 
    6560 > select add #8.10
    6561 
    6562 4891 atoms, 677 residues, 9 models selected 
    6563 
    6564 > select add #8.11
    6565 
    6566 5425 atoms, 751 residues, 10 models selected 
    6567 Alignment identifier is 1 
    6568 Alignment identifier is 8/I 
    6569 Alignment identifier is 2 
    6570 Alignment identifier is 8/Q 
    6571 
    6572 > select #8/Q:2
    6573 
    6574 7 atoms, 6 bonds, 1 residue, 1 model selected 
    6575 
    6576 > select #8/Q
    6577 
    6578 534 atoms, 542 bonds, 74 residues, 1 model selected 
    6579 
    6580 > hide sel cartoons
    6581 
    6582 > select #8/Q:58
    6583 
    6584 7 atoms, 6 bonds, 1 residue, 1 model selected 
    6585 
    6586 > select #8/Q:58-61
    6587 
    6588 29 atoms, 28 bonds, 4 residues, 1 model selected 
    6589 
    6590 > show sel cartoons
    6591 
    6592 > select #8/J-K,M-N:2-3
    6593 
    6594 60 atoms, 56 bonds, 8 residues, 1 model selected 
    6595 
    6596 > select #8/J-K,M-N:2-3
    6597 
    6598 60 atoms, 56 bonds, 8 residues, 1 model selected 
    6599 
    6600 > select #8/J-K,M-N:2-3
    6601 
    6602 60 atoms, 56 bonds, 8 residues, 1 model selected 
    6603 
    6604 > select #8/J-K,M-N
    6605 
    6606 2168 atoms, 2200 bonds, 300 residues, 1 model selected 
    6607 
    6608 > hide sel cartoons
    6609 
    6610 > select #8/J-K,M-N:58
    6611 
    6612 28 atoms, 24 bonds, 4 residues, 1 model selected 
    6613 
    6614 > select #8/J-K,M-N:58-61
    6615 
    6616 116 atoms, 112 bonds, 16 residues, 1 model selected 
    6617 
    6618 > show sel cartoons
    6619 
    6620 > select #8/I:2
    6621 
    6622 7 atoms, 6 bonds, 1 residue, 1 model selected 
    6623 
    6624 > select #8/I
    6625 
    6626 523 atoms, 531 bonds, 73 residues, 1 model selected 
    6627 
    6628 > hide sel cartoons
    6629 
    6630 > select #8/I:58
    6631 
    6632 7 atoms, 6 bonds, 1 residue, 1 model selected 
    6633 
    6634 > select #8/I:58-61
    6635 
    6636 29 atoms, 28 bonds, 4 residues, 1 model selected 
    6637 
    6638 > show sel cartoons
    6639 
    6640 > select #8/I:2
    6641 
    6642 7 atoms, 6 bonds, 1 residue, 1 model selected 
    6643 
    6644 > select #8/I
    6645 
    6646 523 atoms, 531 bonds, 73 residues, 1 model selected 
    6647 
    6648 > select #8/H,L,O-P:2
    6649 
    6650 28 atoms, 24 bonds, 4 residues, 1 model selected 
    6651 
    6652 > select #8/H,L,O-P
    6653 
    6654 2200 atoms, 2232 bonds, 304 residues, 1 model selected 
    6655 
    6656 > hide sel cartoons
    6657 
    6658 > select #8/H,L,O-P:58
    6659 
    6660 28 atoms, 24 bonds, 4 residues, 1 model selected 
    6661 
    6662 > select #8/H,L,O-P:58-61
    6663 
    6664 116 atoms, 112 bonds, 16 residues, 1 model selected 
    6665 
    6666 > show sel cartoons
    6667 
    6668 > select #8/H,L,O-P:59
    6669 
    6670 36 atoms, 32 bonds, 4 residues, 1 model selected 
    6671 
    6672 > select #8/H,L,O-P:59
    6673 
    6674 36 atoms, 32 bonds, 4 residues, 1 model selected 
    6675 
    6676 > show sel atoms
    6677 
    6678 > select #8/I:59
    6679 
    6680 9 atoms, 8 bonds, 1 residue, 1 model selected 
    6681 
    6682 > select #8/I:59
    6683 
    6684 9 atoms, 8 bonds, 1 residue, 1 model selected 
    6685 
    6686 > show sel atoms
    6687 
    6688 > select #8/J-K,M-N:59
    6689 
    6690 36 atoms, 32 bonds, 4 residues, 1 model selected 
    6691 
    6692 > select #8/J-K,M-N:59
    6693 
    6694 36 atoms, 32 bonds, 4 residues, 1 model selected 
    6695 
    6696 > show sel atoms
    6697 
    6698 > select #8/Q:59
    6699 
    6700 9 atoms, 8 bonds, 1 residue, 1 model selected 
    6701 
    6702 > select #8/Q:59
    6703 
    6704 9 atoms, 8 bonds, 1 residue, 1 model selected 
    6705 
    6706 > show sel atoms
    6707 
    6708 > view matrix models #8,1,0,0,0.032442,0,1,0,0.0059412,0,0,1,-0.0014518
    6709 
    6710 > select #8/Q:59
    6711 
    6712 9 atoms, 8 bonds, 1 residue, 1 model selected 
    6713 
    6714 > select #8/Q:59
    6715 
    6716 9 atoms, 8 bonds, 1 residue, 1 model selected 
    6717 
    6718 > view matrix models #8,1,0,0,0.097325,0,1,0,0.017824,0,0,1,-0.0043555
    6719 
    6720 > ui mousemode right select
    6721 
    6722 > select clear
    6723 
    6724 > style #2,4-6,8 ball
    6725 
    6726 Changed 37546 atom styles 
    6727 
    6728 > select clear
    6729 
    6730 > select #8/T:259
    6731 
    6732 11 atoms, 10 bonds, 1 residue, 1 model selected 
    6733 
    6734 > show sel atoms
    6735 
    6736 > select clear
    6737 
    6738 > select #4/F:4727@O
    6739 
    6740 1 atom, 1 residue, 1 model selected 
    6741 
    6742 > hide sel surfaces
    6743 
    6744 > select #4/F:4243@O
    6745 
    6746 1 atom, 1 residue, 1 model selected 
    6747 
    6748 > hide sel surfaces
    6749 
    6750 > select #4/F:6033@O
    6751 
    6752 1 atom, 1 residue, 1 model selected 
    6753 
    6754 > hide sel surfaces
    6755 
    6756 > select #4/F:5181@O
    6757 
    6758 1 atom, 1 residue, 1 model selected 
    6759 
    6760 > hide sel surfaces
    6761 
    6762 > select #4/F:4730@O
    6763 
    6764 1 atom, 1 residue, 1 model selected 
    6765 
    6766 > hide sel surfaces
    6767 
    6768 > select #4/F:6455@O
    6769 
    6770 1 atom, 1 residue, 1 model selected 
    6771 
    6772 > select #4/F:6009@O
    6773 
    6774 1 atom, 1 residue, 1 model selected 
    6775 
    6776 > hide sel surfaces
    6777 
    6778 > select #4/F:5165@O
    6779 
    6780 1 atom, 1 residue, 1 model selected 
    6781 
    6782 > hide sel surfaces
    6783 
    6784 > select #4/F:4724@O
    6785 
    6786 1 atom, 1 residue, 1 model selected 
    6787 
    6788 > hide sel surfaces
    6789 
    6790 Drag select of rfxa1_outlet_hollow2.pdb_F SES surface, 630 of 3926 triangles,
    6791 5 atoms, 4 residues, 5 bonds 
    6792 Drag select of rfxa1_outlet_hollow2.pdb_F SES surface, 139 of 3926 triangles,
    6793 rfxa1_outlet_hollow2.pdb_G SES surface, 258 of 7744 triangles,
    6794 rfxa1_outlet_hollow2.pdb_H SES surface, 293 of 35632 triangles, 3 residues 
    6795 
    6796 > select #4/F:5592@O
    6797 
    6798 1 atom, 1 residue, 1 model selected 
    6799 
    6800 > select #4/G:548@O
    6801 
    6802 1 atom, 1 residue, 1 model selected 
    6803 
    6804 > select #4/F:4717@O
    6805 
    6806 1 atom, 1 residue, 1 model selected 
    6807 
    6808 > hide sel surfaces
    6809 
    6810 > select clear
    6811 
    6812 Drag select of rfxa1_outlet_hollow2.pdb_F SES surface, 74 of 3926 triangles 
    6813 Drag select of rfxa1_outlet_hollow2.pdb_F SES surface, 27 of 3926 triangles 
    6814 
    6815 > hide #!2,4-6,8 surfaces
    6816 
    6817 > show #!2,4-6,8 surfaces
    6818 
    6819 > hide #!2,4-6,8 surfaces
    6820 
    6821 > select add #6
    6822 
    6823 5690 atoms, 4616 bonds, 5690 residues, 2 models selected 
    6824 
    6825 > show sel surfaces
    6826 
    6827 > select add #4
    6828 
    6829 12078 atoms, 9672 bonds, 12078 residues, 6 models selected 
    6830 
    6831 > select add #5
    6832 
    6833 19169 atoms, 14970 bonds, 19169 residues, 10 models selected 
    6834 
    6835 > select add #2
    6836 
    6837 26399 atoms, 20443 bonds, 26399 residues, 15 models selected 
    6838 
    6839 > show sel surfaces
    6840 
    6841 > select clear
    6842 
    6843 > select add #8.17
    6844 
    6845 2232 atoms, 291 residues, 1 model selected 
    6846 
    6847 > select add #8.12
    6848 
    6849 4464 atoms, 582 residues, 2 models selected 
    6850 Alignment identifier is 3 
    6851 
    6852 > select #8/T,Z:1
    6853 
    6854 16 atoms, 14 bonds, 2 residues, 1 model selected 
    6855 
    6856 > select #8/T,Z:1-108
    6857 
    6858 1608 atoms, 1628 bonds, 216 residues, 1 model selected 
    6859 
    6860 > hide sel cartoons
    6861 
    6862 > select #8/T,Z:109
    6863 
    6864 22 atoms, 20 bonds, 2 residues, 1 model selected 
    6865 
    6866 > select #8/T,Z:109-198
    6867 
    6868 994 atoms, 1026 bonds, 2 pseudobonds, 132 residues, 2 models selected 
    6869 
    6870 > hide sel cartoons
    6871 
    6872 > select #5/F:8194@O
    6873 
    6874 1 atom, 1 residue, 1 model selected 
    6875 
    6876 > hide sel surfaces
    6877 
    6878 Drag select of rfxa2_outlet_hollow.pdb_A SES surface, 603 of 31532 triangles,
    6879 2 residues 
    6880 
    6881 > select clear
    6882 
    6883 > select #8/T:202
    6884 
    6885 7 atoms, 6 bonds, 1 residue, 1 model selected 
    6886 
    6887 > select #8/T,Z:199
    6888 
    6889 16 atoms, 14 bonds, 2 residues, 1 model selected 
    6890 
    6891 > select #8/T,Z:199-216
    6892 
    6893 286 atoms, 292 bonds, 36 residues, 1 model selected 
    6894 
    6895 > hide sel cartoons
    6896 
    6897 > select #8/T,Z:217
    6898 
    6899 8 atoms, 6 bonds, 2 residues, 1 model selected 
    6900 
    6901 > select #8/T,Z:217-223
    6902 
    6903 98 atoms, 98 bonds, 14 residues, 1 model selected 
    6904 
    6905 > hide sel cartoons
    6906 
    6907 > select #8/T,Z:224-225
    6908 
    6909 32 atoms, 32 bonds, 4 residues, 1 model selected 
    6910 
    6911 > select #8/T,Z:224-235
    6912 
    6913 210 atoms, 216 bonds, 24 residues, 1 model selected 
    6914 
    6915 > hide sel cartoons
    6916 
    6917 > select #4/I:3079@O
    6918 
    6919 1 atom, 1 residue, 1 model selected 
    6920 
    6921 > select #4/I:3089@O
    6922 
    6923 1 atom, 1 residue, 1 model selected 
    6924 
    6925 > select add #4
    6926 
    6927 6388 atoms, 5056 bonds, 6388 residues, 2 models selected 
    6928 
    6929 > select subtract #4
    6930 
    6931 4 models selected 
    6932 
    6933 > hide #!6 models
    6934 
    6935 > show #!6 models
    6936 
    6937 > hide #!6 models
    6938 
    6939 > hide #!5 models
    6940 
    6941 > hide #!4 models
    6942 
    6943 > hide #!2 models
    6944 
    6945 Cell requested for row 0 is out of bounds for table with 28 rows! Resizing
    6946 table model. 
    6947 
    6948 > close #1
    6949 
    6950 > close #3
    6951 
    6952 > open
    6953 > /Users/wujingyi/Desktop/RfxATPasePDB+map_new/RfxATPase_PDB/J436_state1_synthasis_2.82A_14.82w-coot-3.pdb
    6954 
    6955 Summary of feedback from opening
    6956 /Users/wujingyi/Desktop/RfxATPasePDB+map_new/RfxATPase_PDB/J436_state1_synthasis_2.82A_14.82w-coot-3.pdb 
    6957 --- 
    6958 warning | Cannot find LINK/SSBOND residue CYS (40 ) 
    6959  
    6960 Chain information for J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1 
    6961 --- 
    6962 Chain | Description 
    6963 A | No description available 
    6964 B | No description available 
    6965 C | No description available 
    6966 D | No description available 
    6967 E | No description available 
    6968 F | No description available 
    6969 G | No description available 
    6970 H L O P | No description available 
    6971 I | No description available 
    6972 J K M N | No description available 
    6973 Q | No description available 
    6974 R | No description available 
    6975 S W | No description available 
    6976 T | No description available 
    6977 U | No description available 
    6978 V | No description available 
    6979 X | No description available 
    6980 Y | No description available 
    6981 Z | No description available 
    6982  
    6983 4 atoms have alternate locations. Control/examine alternate locations with
    6984 Altloc Explorer [start tool...] or the altlocs command. 
    6985 
    6986 > hide #!1,8 atoms
    6987 
    6988 > show #!1,8 cartoons
    6989 
    6990 > select add #8
    6991 
    6992 11147 atoms, 11365 bonds, 2 pseudobonds, 1481 residues, 2 models selected 
    6993 
    6994 > show sel surfaces
    6995 
    6996 > hide sel surfaces
    6997 
    6998 > select subtract #8
    6999 
    7000 16 models selected 
    7001 
    7002 > select add #1
    7003 
    7004 37992 atoms, 38497 bonds, 3 pseudobonds, 5372 residues, 2 models selected 
    7005 
    7006 > show sel surfaces
    7007 
    7008 > hide sel surfaces
    7009 
    7010 > select subtract #1.27
    7011 
    7012 36450 atoms, 36947 bonds, 2 pseudobonds, 5094 residues, 28 models selected 
    7013 
    7014 > select subtract #1.25
    7015 
    7016 35708 atoms, 36206 bonds, 2 pseudobonds, 4945 residues, 27 models selected 
    7017 
    7018 > select subtract #1.24
    7019 
    7020 35343 atoms, 35842 bonds, 2 pseudobonds, 4871 residues, 26 models selected 
    7021 
    7022 > select subtract #1.23
    7023 
    7024 34585 atoms, 35085 bonds, 2 pseudobonds, 4720 residues, 25 models selected 
    7025 
    7026 > select subtract #1.22
    7027 
    7028 33838 atoms, 34339 bonds, 2 pseudobonds, 4570 residues, 24 models selected 
    7029 
    7030 > select subtract #1.21
    7031 
    7032 32250 atoms, 32736 bonds, 4305 residues, 22 models selected 
    7033 
    7034 > select subtract #1.19
    7035 
    7036 31170 atoms, 31646 bonds, 4167 residues, 21 models selected 
    7037 
    7038 > select subtract #1.18
    7039 
    7040 30643 atoms, 31111 bonds, 4094 residues, 20 models selected 
    7041 
    7042 > select subtract #1.17
    7043 
    7044 30100 atoms, 30560 bonds, 4019 residues, 19 models selected 
    7045 
    7046 > select subtract #1.16
    7047 
    7048 29557 atoms, 30009 bonds, 3944 residues, 18 models selected 
    7049 
    7050 > select subtract #1.15
    7051 
    7052 29022 atoms, 29466 bonds, 3870 residues, 17 models selected 
    7053 
    7054 > select subtract #1.14
    7055 
    7056 28487 atoms, 28923 bonds, 3796 residues, 16 models selected 
    7057 
    7058 > select subtract #1.13
    7059 
    7060 27944 atoms, 28372 bonds, 3721 residues, 15 models selected 
    7061 
    7062 > select subtract #1.12
    7063 
    7064 27409 atoms, 27829 bonds, 3647 residues, 14 models selected 
    7065 
    7066 > select subtract #1.11
    7067 
    7068 26874 atoms, 27286 bonds, 3573 residues, 13 models selected 
    7069 
    7070 > select subtract #1.10
    7071 
    7072 26358 atoms, 26762 bonds, 3501 residues, 12 models selected 
    7073 
    7074 > hide sel cartoons
    7075 
    7076 > select subtract #1.26
    7077 
    7078 25606 atoms, 26011 bonds, 3350 residues, 11 models selected 
    7079 
    7080 > select add #1
    7081 
    7082 37992 atoms, 38497 bonds, 3 pseudobonds, 5372 residues, 11 models selected 
    7083 
    7084 > select subtract #1
    7085 
    7086 26 models selected 
    7087 
    7088 > select add #1.19
    7089 
    7090 1080 atoms, 138 residues, 1 model selected 
    7091 
    7092 > hide sel cartoons
    7093 
    7094 > select add #1.22
    7095 
    7096 1827 atoms, 288 residues, 2 models selected 
    7097 
    7098 > select add #1.23
    7099 
    7100 2585 atoms, 439 residues, 3 models selected 
    7101 
    7102 > select add #1.25
    7103 
    7104 3327 atoms, 588 residues, 4 models selected 
    7105 
    7106 > select add #1.26
    7107 
    7108 4079 atoms, 739 residues, 5 models selected 
    7109 
    7110 > select add #1.24
    7111 
    7112 4444 atoms, 813 residues, 6 models selected 
    7113 
    7114 > hide sel cartoons
    7115 
    7116 > select add #1
    7117 
    7118 37992 atoms, 38497 bonds, 3 pseudobonds, 5372 residues, 8 models selected 
    7119 
    7120 > select subtract #1
    7121 
    7122 26 models selected 
    7123 
    7124 > select add #1.21
    7125 
    7126 1588 atoms, 265 residues, 1 model selected 
    7127 
    7128 > select add #1.27
    7129 
    7130 3130 atoms, 543 residues, 2 models selected 
    7131 
    7132 > color (#!1 & sel) forest green
    7133 
    7134 > select subtract #1.21
    7135 
    7136 1542 atoms, 278 residues, 3 models selected 
    7137 
    7138 > select subtract #1.27
    7139 
    7140 1 model selected 
    7141 
    7142 > select add #1.9
    7143 
    7144 543 atoms, 75 residues, 1 model selected 
    7145 
    7146 > select add #1.10
    7147 
    7148 1059 atoms, 147 residues, 2 models selected 
    7149 
    7150 > select add #1.11
    7151 
    7152 1594 atoms, 221 residues, 3 models selected 
    7153 
    7154 > select add #1.12
    7155 
    7156 2129 atoms, 295 residues, 4 models selected 
    7157 
    7158 > select add #1.13
    7159 
    7160 2672 atoms, 370 residues, 5 models selected 
    7161 
    7162 > select add #1.14
    7163 
    7164 3207 atoms, 444 residues, 6 models selected 
    7165 
    7166 > select add #1.15
    7167 
    7168 3742 atoms, 518 residues, 7 models selected 
    7169 
    7170 > select add #1.16
    7171 
    7172 4285 atoms, 593 residues, 8 models selected 
    7173 
    7174 > select add #1.17
    7175 
    7176 4828 atoms, 668 residues, 9 models selected 
    7177 
    7178 > select add #1.18
    7179 
    7180 5355 atoms, 741 residues, 10 models selected 
    7181 
    7182 > color (#!1 & sel) #f5ccdc7f
    7183 
    7184 > color (#!1 & sel) #f5ccdc73
    7185 
    7186 > color (#!1 & sel) #f5ccdc76
    7187 
    7188 > color (#!1 & sel) #f5ccdc81
    7189 
    7190 > color (#!1 & sel) #f5ccdca6
    7191 
    7192 > color (#!1 & sel) #f5ccdcbb
    7193 
    7194 > color (#!1 & sel) #f5ccdcff
    7195 
    7196 > select add #1
    7197 
    7198 37992 atoms, 38497 bonds, 3 pseudobonds, 5372 residues, 12 models selected 
    7199 
    7200 > select subtract #1
    7201 
    7202 26 models selected 
    7203 
    7204 Cell requested for row 0 is out of bounds for table with 34 rows! Resizing
    7205 table model. 
    7206 
    7207 > hide #!1 models
    7208 
    7209 > show #!1 models
    7210 
    7211 > hide #!1 models
    7212 
    7213 > show #!1 models
    7214 
    7215 > hide #!1 models
    7216 
    7217 > show #!1 models
    7218 
    7219 > hide #!1 models
    7220 
    7221 > show #!1 models
    7222 
    7223 > hide #!1 models
    7224 
    7225 > show #!1 models
    7226 
    7227 > hide #!1 models
    7228 
    7229 > show #!1 models
    7230 
    7231 > hide #!1 models
    7232 
    7233 > show #!1 models
    7234 
    7235 > hide #!1 models
    7236 
    7237 > show #!1 models
    7238 
    7239 > hide #!1 models
    7240 
    7241 > hide #!8 models
    7242 
    7243 > show #!1 models
    7244 
    7245 > select clear
    7246 
    7247 > select add #1.9
    7248 
    7249 543 atoms, 75 residues, 1 model selected 
    7250 
    7251 > select subtract #1.9
    7252 
    7253 1 model selected 
    7254 
    7255 > select add #1.9
    7256 
    7257 543 atoms, 75 residues, 1 model selected 
    7258 
    7259 > show sel cartoons
    7260 
    7261 > select subtract #1.9
    7262 
    7263 1 model selected 
    7264 
    7265 > select #1/T:259
    7266 
    7267 11 atoms, 10 bonds, 1 residue, 1 model selected 
    7268 
    7269 > show sel atoms
    7270 
    7271 > style (#!1 & sel) stick
    7272 
    7273 Changed 11 atom styles 
    7274 
    7275 > select clear
    7276 
    7277 > hide #!1 models
    7278 
    7279 > show #!8 models
    7280 
    7281 > select #8/T:259
    7282 
    7283 11 atoms, 10 bonds, 1 residue, 1 model selected 
    7284 
    7285 > show sel atoms
    7286 
    7287 > select add #8
    7288 
    7289 11147 atoms, 11365 bonds, 2 pseudobonds, 1481 residues, 3 models selected 
    7290 
    7291 > show #!1 models
    7292 
    7293 > select subtract #8
    7294 
    7295 16 models selected 
    7296 
    7297 > hide #!8 models
    7298 
    7299 > select #1/Z:259
    7300 
    7301 11 atoms, 10 bonds, 1 residue, 1 model selected 
    7302 
    7303 > show sel atoms
    7304 
    7305 > style (#!1 & sel) stick
    7306 
    7307 Changed 11 atom styles 
    7308 
    7309 > select clear
    7310 
    7311 > open "/Users/wujingyi/Desktop/RfxATPasePDB+map_new/local
    7312 > map/Fo/J546_state1_synthasis_Fo_3.52A_14.82w.mrc"
    7313 
    7314 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc as #3, grid size 400,400,400,
    7315 pixel 0.93, shown at level 0.041, step 2, values float32 
    7316 
    7317 > volume #3 step 1
    7318 
    7319 > volume #3 level 0.1262
    7320 
    7321 > volume #3 level 0.1343
    7322 
    7323 > color zone #3 near #1 distance 5.58
    7324 
    7325 > surface dust #3 size 9.3
    7326 
    7327 > volume #3 level 0.1059
    7328 
    7329 > ui tool show "Color Zone"
    7330 
    7331 > color zone #3 near #1 distance 5.58
    7332 
    7333 > volume splitbyzone #3
    7334 
    7335 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 0 as #9.1, grid size
    7336 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7337 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 1 as #9.2, grid size
    7338 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7339 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 2 as #9.3, grid size
    7340 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7341 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 3 as #9.4, grid size
    7342 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7343 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 4 as #9.5, grid size
    7344 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7345 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 5 as #9.6, grid size
    7346 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7347 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 6 as #9.7, grid size
    7348 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7349 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 7 as #9.8, grid size
    7350 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7351 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 8 as #9.9, grid size
    7352 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7353 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 9 as #9.10, grid size
    7354 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7355 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 10 as #9.11, grid size
    7356 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7357 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 11 as #9.12, grid size
    7358 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7359 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 12 as #9.13, grid size
    7360 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7361 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 13 as #9.14, grid size
    7362 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7363 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 14 as #9.15, grid size
    7364 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7365 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 15 as #9.16, grid size
    7366 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7367 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 16 as #9.17, grid size
    7368 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7369 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 17 as #9.18, grid size
    7370 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7371 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 18 as #9.19, grid size
    7372 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7373 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 19 as #9.20, grid size
    7374 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7375 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 20 as #9.21, grid size
    7376 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7377 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 21 as #9.22, grid size
    7378 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7379 
    7380 > surface dust #9.3 size 9.3
    7381 
    7382 > surface dust #9.4 size 9.3
    7383 
    7384 > surface dust #9.12 size 9.3
    7385 
    7386 > surface dust #9.17 size 9.3
    7387 
    7388 > surface dust #9.18 size 9.3
    7389 
    7390 > surface dust #9.19 size 9.3
    7391 
    7392 > surface dust #9.20 size 9.3
    7393 
    7394 > surface dust #9.21 size 9.3
    7395 
    7396 > surface dust #9.22 size 9.3
    7397 
    7398 > volume #9.17 level 0.08025
    7399 
    7400 > volume #9.12 color #f5ccdc80
    7401 
    7402 > volume #9.17 color #228b2275
    7403 
    7404 > select #8/H,L,O-P:59
    7405 
    7406 36 atoms, 32 bonds, 4 residues, 1 model selected 
    7407 
    7408 > select #8/H,L,O-P:59
    7409 
    7410 36 atoms, 32 bonds, 4 residues, 1 model selected 
    7411 
    7412 > show #!1 atoms
    7413 
    7414 > hide #!1 atoms
    7415 
    7416 Drag select of 9.12 J546_state1_synthasis_Fo_3.52A_14.82w.mrc 11 , 1283
    7417 residues, 3 pseudobonds 
    7418 Alignment identifier is 1/I 
    7419 Alignment identifier is 1/Q 
    7420 Alignment identifier is 1 
    7421 Alignment identifier is 2 
    7422 Alignment identifier is 1/T 
    7423 Alignment identifier is 1/Z 
    7424 
    7425 > select #1/N,M,K,J:3
    7426 
    7427 32 atoms, 28 bonds, 4 residues, 1 model selected 
    7428 
    7429 > select #1/N,M,K,J
    7430 
    7431 2140 atoms, 2172 bonds, 296 residues, 1 model selected 
    7432 
    7433 > hide sel cartoons
    7434 
    7435 > select #1/P,O,L,H:3
    7436 
    7437 32 atoms, 28 bonds, 4 residues, 1 model selected 
    7438 
    7439 > select #1/P,O,L,H
    7440 
    7441 2172 atoms, 2204 bonds, 300 residues, 1 model selected 
    7442 
    7443 > hide sel cartoons
    7444 
    7445 > select #1/Q:3
    7446 
    7447 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7448 
    7449 > select #1/Q
    7450 
    7451 527 atoms, 535 bonds, 73 residues, 1 model selected 
    7452 
    7453 > hide sel cartoons
    7454 
    7455 > select #1/I:3
    7456 
    7457 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7458 
    7459 > select #1/I
    7460 
    7461 516 atoms, 524 bonds, 72 residues, 1 model selected 
    7462 
    7463 > hide sel cartoons
    7464 
    7465 > select #1/I:58
    7466 
    7467 7 atoms, 6 bonds, 1 residue, 1 model selected 
    7468 
    7469 > select #1/I:58-61
    7470 
    7471 29 atoms, 28 bonds, 4 residues, 1 model selected 
    7472 
    7473 > show sel cartoons
    7474 
    7475 > show sel atoms
    7476 
    7477 > style (#!1 & sel) stick
    7478 
    7479 Changed 29 atom styles 
    7480 
    7481 > hide sel atoms
    7482 
    7483 > select #1/Q:58
    7484 
    7485 7 atoms, 6 bonds, 1 residue, 1 model selected 
    7486 
    7487 > select #1/Q:58-61
    7488 
    7489 29 atoms, 28 bonds, 4 residues, 1 model selected 
    7490 
    7491 > show sel cartoons
    7492 
    7493 > select #1/P,O,L,H:57
    7494 
    7495 32 atoms, 28 bonds, 4 residues, 1 model selected 
    7496 
    7497 > select #1/P,O,L,H:57-60
    7498 
    7499 116 atoms, 112 bonds, 16 residues, 1 model selected 
    7500 
    7501 > select #1/P,O,L,H:58
    7502 
    7503 28 atoms, 24 bonds, 4 residues, 1 model selected 
    7504 
    7505 > select #1/P,O,L,H:58-61
    7506 
    7507 116 atoms, 112 bonds, 16 residues, 1 model selected 
    7508 
    7509 > show sel cartoons
    7510 
    7511 > select #1/N,M,K,J:58
    7512 
    7513 28 atoms, 24 bonds, 4 residues, 1 model selected 
    7514 
    7515 > select #1/N,M,K,J:58-60
    7516 
    7517 84 atoms, 80 bonds, 12 residues, 1 model selected 
    7518 
    7519 > select #1/N,M,K,J:58
    7520 
    7521 28 atoms, 24 bonds, 4 residues, 1 model selected 
    7522 
    7523 > select #1/N,M,K,J:58-61
    7524 
    7525 116 atoms, 112 bonds, 16 residues, 1 model selected 
    7526 
    7527 > show sel atoms
    7528 
    7529 > hide sel atoms
    7530 
    7531 > show sel cartoons
    7532 
    7533 > select #1/I:59
    7534 
    7535 9 atoms, 8 bonds, 1 residue, 1 model selected 
    7536 
    7537 > select #1/I:59
    7538 
    7539 9 atoms, 8 bonds, 1 residue, 1 model selected 
    7540 
    7541 > show sel atoms
    7542 
    7543 > select #1/Q:59
    7544 
    7545 9 atoms, 8 bonds, 1 residue, 1 model selected 
    7546 
    7547 > select #1/Q:59-60
    7548 
    7549 14 atoms, 13 bonds, 2 residues, 1 model selected 
    7550 
    7551 > select #1/Q:58-59
    7552 
    7553 16 atoms, 15 bonds, 2 residues, 1 model selected 
    7554 
    7555 > select #1/Q:58-59
    7556 
    7557 16 atoms, 15 bonds, 2 residues, 1 model selected 
    7558 
    7559 > select #1/Q:59
    7560 
    7561 9 atoms, 8 bonds, 1 residue, 1 model selected 
    7562 
    7563 > select #1/Q:59
    7564 
    7565 9 atoms, 8 bonds, 1 residue, 1 model selected 
    7566 
    7567 > show sel atoms
    7568 
    7569 > select #1/P,O,L,H:59
    7570 
    7571 36 atoms, 32 bonds, 4 residues, 1 model selected 
    7572 
    7573 > select #1/P,O,L,H:59
    7574 
    7575 36 atoms, 32 bonds, 4 residues, 1 model selected 
    7576 
    7577 > show sel atoms
    7578 
    7579 > select #1/N,M,K,J:59
    7580 
    7581 36 atoms, 32 bonds, 4 residues, 1 model selected 
    7582 
    7583 > select #1/N,M,K,J:59
    7584 
    7585 36 atoms, 32 bonds, 4 residues, 1 model selected 
    7586 
    7587 > show sel atoms
    7588 
    7589 > select clear
    7590 
    7591 > style #1#9.12#!9 stick
    7592 
    7593 Changed 37992 atom styles 
    7594 
    7595 > hide #!9.12 models
    7596 
    7597 > show #!9.17 models
    7598 
    7599 > color zone #9.17 near #1 distance 5.58
    7600 
    7601 > volume #9.17 level 0.09308
    7602 
    7603 > volume #9.17 color #228b2233
    7604 
    7605 > select clear
    7606 
    7607 > select #1/T:259
    7608 
    7609 11 atoms, 10 bonds, 1 residue, 1 model selected 
    7610 
    7611 > show sel atoms
    7612 
    7613 > select #1/Z:259
    7614 
    7615 11 atoms, 10 bonds, 1 residue, 1 model selected 
    7616 
    7617 > show sel atoms
    7618 
    7619 > select clear
    7620 
    7621 > select #1/T:259
    7622 
    7623 11 atoms, 10 bonds, 1 residue, 1 model selected 
    7624 
    7625 > color (#!1 & sel) byhetero
    7626 
    7627 > select #1/Z:259
    7628 
    7629 11 atoms, 10 bonds, 1 residue, 1 model selected 
    7630 
    7631 > color (#!1 & sel) byhetero
    7632 
    7633 > select #1/T:259
    7634 
    7635 11 atoms, 10 bonds, 1 residue, 1 model selected 
    7636 
    7637 > select clear
    7638 
    7639 > style #1#!9 ball
    7640 
    7641 Changed 37992 atom styles 
    7642 
    7643 > select clear
    7644 
    7645 > select #1/P,O,L,H:3
    7646 
    7647 32 atoms, 28 bonds, 4 residues, 1 model selected 
    7648 
    7649 > select #1/P,O,L,H
    7650 
    7651 2172 atoms, 2204 bonds, 300 residues, 1 model selected 
    7652 
    7653 > select #1/T:1
    7654 
    7655 5 atoms, 4 bonds, 1 residue, 1 model selected 
    7656 
    7657 > select #1/T:1-219
    7658 
    7659 940 atoms, 945 bonds, 2 pseudobonds, 169 residues, 2 models selected 
    7660 
    7661 > hide sel atoms
    7662 
    7663 > hide sel cartoons
    7664 
    7665 > select #1/Z:1
    7666 
    7667 5 atoms, 4 bonds, 1 residue, 1 model selected 
    7668 
    7669 > select #1/Z:1-197
    7670 
    7671 787 atoms, 785 bonds, 1 pseudobond, 160 residues, 2 models selected 
    7672 
    7673 > hide sel cartoons
    7674 
    7675 > select #1/Z:1
    7676 
    7677 5 atoms, 4 bonds, 1 residue, 1 model selected 
    7678 
    7679 > select #1/Z:1-238
    7680 
    7681 987 atoms, 985 bonds, 1 pseudobond, 201 residues, 2 models selected 
    7682 
    7683 > hide sel cartoons
    7684 
    7685 > select #1/T:220
    7686 
    7687 5 atoms, 4 bonds, 1 residue, 1 model selected 
    7688 
    7689 > select #1/T:220-240
    7690 
    7691 108 atoms, 107 bonds, 21 residues, 1 model selected 
    7692 
    7693 > hide sel cartoons
    7694 
    7695 > select #1/T:1
    7696 
    7697 5 atoms, 4 bonds, 1 residue, 1 model selected 
    7698 
    7699 > select #1/T:1-239
    7700 
    7701 1040 atoms, 1045 bonds, 2 pseudobonds, 189 residues, 2 models selected 
    7702 
    7703 > select #1/T:1
    7704 
    7705 5 atoms, 4 bonds, 1 residue, 1 model selected 
    7706 
    7707 > select #1/T:1-240
    7708 
    7709 1048 atoms, 1053 bonds, 2 pseudobonds, 190 residues, 2 models selected 
    7710 
    7711 > select clear
    7712 
    7713 > select #1/T:1
    7714 
    7715 5 atoms, 4 bonds, 1 residue, 1 model selected 
    7716 
    7717 > select #1/T:1-240
    7718 
    7719 1048 atoms, 1053 bonds, 2 pseudobonds, 190 residues, 2 models selected 
    7720 
    7721 > color (#!1 & sel) white
    7722 
    7723 > select #1/Z:1
    7724 
    7725 5 atoms, 4 bonds, 1 residue, 1 model selected 
    7726 
    7727 > select #1/Z:1-238
    7728 
    7729 987 atoms, 985 bonds, 1 pseudobond, 201 residues, 2 models selected 
    7730 
    7731 > color (#!1 & sel) white
    7732 
    7733 > show sel cartoons
    7734 
    7735 > select #1/T:1-2
    7736 
    7737 10 atoms, 9 bonds, 2 residues, 1 model selected 
    7738 
    7739 > select #1/T:1-240
    7740 
    7741 1048 atoms, 1053 bonds, 2 pseudobonds, 190 residues, 2 models selected 
    7742 
    7743 > show sel cartoons
    7744 
    7745 > select clear
    7746 
    7747 > color zone #3 near #1 distance 5.58
    7748 
    7749 > volume splitbyzone #3
    7750 
    7751 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 0 as #10.1, grid size
    7752 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7753 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 1 as #10.2, grid size
    7754 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7755 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 2 as #10.3, grid size
    7756 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7757 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 3 as #10.4, grid size
    7758 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7759 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 4 as #10.5, grid size
    7760 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7761 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 5 as #10.6, grid size
    7762 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7763 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 6 as #10.7, grid size
    7764 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7765 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 7 as #10.8, grid size
    7766 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7767 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 8 as #10.9, grid size
    7768 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7769 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 9 as #10.10, grid size
    7770 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7771 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 10 as #10.11, grid size
    7772 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7773 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 11 as #10.12, grid size
    7774 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7775 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 12 as #10.13, grid size
    7776 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7777 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 13 as #10.14, grid size
    7778 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7779 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 14 as #10.15, grid size
    7780 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7781 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 15 as #10.16, grid size
    7782 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7783 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 16 as #10.17, grid size
    7784 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7785 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 17 as #10.18, grid size
    7786 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7787 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 18 as #10.19, grid size
    7788 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7789 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 19 as #10.20, grid size
    7790 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7791 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 20 as #10.21, grid size
    7792 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7793 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 21 as #10.22, grid size
    7794 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7795 
    7796 > surface dust #10.12 size 9.3
    7797 
    7798 > surface dust #10.18 size 9.3
    7799 
    7800 > select #1/T:1-15
    7801 
    7802 74 atoms, 73 bonds, 15 residues, 1 model selected 
    7803 
    7804 > select #1/T:1-240
    7805 
    7806 1048 atoms, 1053 bonds, 2 pseudobonds, 190 residues, 2 models selected 
    7807 
    7808 > hide sel cartoons
    7809 
    7810 > select #1/Z:1
    7811 
    7812 5 atoms, 4 bonds, 1 residue, 1 model selected 
    7813 
    7814 > select #1/Z:1-238
    7815 
    7816 987 atoms, 985 bonds, 1 pseudobond, 201 residues, 2 models selected 
    7817 
    7818 > hide sel cartoons
    7819 
    7820 > volume #10.18 color #228b222f
    7821 
    7822 > volume #10.18 color #228b2220
    7823 
    7824 > volume #10.18 level 0.1266
    7825 
    7826 > volume #10.18 level -0.04986
    7827 
    7828 > volume #10.18 level 0.1485
    7829 
    7830 > volume #10.18 level 0.1716
    7831 
    7832 > hide #!9 models
    7833 
    7834 > hide #!10 models
    7835 
    7836 > hide #!1 models
    7837 
    7838 > show #!8 models
    7839 
    7840 > hide #!8 models
    7841 
    7842 > show #!1 models
    7843 
    7844 > cartoon style (#!1 & sel) modeHelix tube sides 20
    7845 
    7846 > show #!10 models
    7847 
    7848 > hide #!10 models
    7849 
    7850 > show #!9 models
    7851 
    7852 > volume #10.18 color forestgreen
    7853 
    7854 > volume #10.18 level 0.04628
    7855 
    7856 > volume #10.18
    7857 
    7858 [Repeated 1 time(s)]
    7859 
    7860 > hide #!1 models
    7861 
    7862 > show #!1 models
    7863 
    7864 > cartoon style (#!1 & sel) xsection oval modeHelix default
    7865 
    7866 > close #10
    7867 
    7868 > close #9
    7869 
    7870 > show #!3 models
    7871 
    7872 > color zone #3 near #1 distance 5.58
    7873 
    7874 > volume splitbyzone #3
    7875 
    7876 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 0 as #9.1, grid size
    7877 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7878 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 1 as #9.2, grid size
    7879 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7880 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 2 as #9.3, grid size
    7881 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7882 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 3 as #9.4, grid size
    7883 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7884 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 4 as #9.5, grid size
    7885 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7886 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 5 as #9.6, grid size
    7887 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7888 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 6 as #9.7, grid size
    7889 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7890 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 7 as #9.8, grid size
    7891 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7892 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 8 as #9.9, grid size
    7893 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7894 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 9 as #9.10, grid size
    7895 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7896 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 10 as #9.11, grid size
    7897 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7898 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 11 as #9.12, grid size
    7899 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7900 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 12 as #9.13, grid size
    7901 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7902 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 13 as #9.14, grid size
    7903 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7904 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 14 as #9.15, grid size
    7905 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7906 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 15 as #9.16, grid size
    7907 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7908 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 16 as #9.17, grid size
    7909 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7910 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 17 as #9.18, grid size
    7911 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7912 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 18 as #9.19, grid size
    7913 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7914 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 19 as #9.20, grid size
    7915 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7916 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 20 as #9.21, grid size
    7917 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7918 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 21 as #9.22, grid size
    7919 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7920 
    7921 > hide #!9 models
    7922 
    7923 > select add #1
    7924 
    7925 37992 atoms, 38497 bonds, 3 pseudobonds, 5372 residues, 3 models selected 
    7926 
    7927 > select clear
    7928 
    7929 > select #1/T:259
    7930 
    7931 11 atoms, 10 bonds, 1 residue, 1 model selected 
    7932 
    7933 > select add #1/Z:259
    7934 
    7935 22 atoms, 20 bonds, 2 residues, 2 models selected 
    7936 
    7937 > color (#!1 & sel) forest green
    7938 
    7939 > select clear
    7940 
    7941 > close #9
    7942 
    7943 > show #!3 models
    7944 
    7945 > color zone #3 near #1 distance 5.58
    7946 
    7947 [Repeated 3 time(s)]
    7948 
    7949 > volume splitbyzone #3
    7950 
    7951 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 0 as #9.1, grid size
    7952 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7953 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 1 as #9.2, grid size
    7954 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7955 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 2 as #9.3, grid size
    7956 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7957 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 3 as #9.4, grid size
    7958 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7959 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 4 as #9.5, grid size
    7960 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7961 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 5 as #9.6, grid size
    7962 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7963 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 6 as #9.7, grid size
    7964 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7965 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 7 as #9.8, grid size
    7966 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7967 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 8 as #9.9, grid size
    7968 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7969 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 9 as #9.10, grid size
    7970 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7971 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 10 as #9.11, grid size
    7972 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7973 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 11 as #9.12, grid size
    7974 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7975 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 12 as #9.13, grid size
    7976 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7977 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 13 as #9.14, grid size
    7978 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7979 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 14 as #9.15, grid size
    7980 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7981 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 15 as #9.16, grid size
    7982 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7983 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 16 as #9.17, grid size
    7984 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7985 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 17 as #9.18, grid size
    7986 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7987 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 18 as #9.19, grid size
    7988 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7989 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 19 as #9.20, grid size
    7990 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7991 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 20 as #9.21, grid size
    7992 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7993 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 21 as #9.22, grid size
    7994 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    7995 
    7996 > volume #9.18 color #228b2236
    7997 
    7998 > volume #9.12 color #f5ccdc10
    7999 
    8000 > select clear
    8001 
    8002 > surface dust #9.6 size 9.3
    8003 
    8004 > surface dust #9.7 size 9.3
    8005 
    8006 > surface dust #9.8 size 9.3
    8007 
    8008 > surface dust #9.9 size 9.3
    8009 
    8010 > surface dust #9.10 size 9.3
    8011 
    8012 > surface dust #9.11 size 9.3
    8013 
    8014 > surface dust #9.18 size 9.3
    8015 
    8016 > surface dust #9.22 size 9.3
    8017 
    8018 > hide #!9 models
    8019 
    8020 > show #!9 models
    8021 
    8022 > close #9
    8023 
    8024 > select add #1.27
    8025 
    8026 1542 atoms, 278 residues, 1 model selected 
    8027 
    8028 > select add #1.21
    8029 
    8030 3130 atoms, 543 residues, 2 models selected 
    8031 
    8032 > color (#!1 & sel) forest green
    8033 
    8034 > select subtract #1.27
    8035 
    8036 1588 atoms, 265 residues, 3 models selected 
    8037 
    8038 > select subtract #1.21
    8039 
    8040 1 model selected 
    8041 
    8042 > select add #1.22
    8043 
    8044 747 atoms, 150 residues, 1 model selected 
    8045 
    8046 > select subtract #1.22
    8047 
    8048 1 model selected 
    8049 
    8050 > select add #1.21
    8051 
    8052 1588 atoms, 265 residues, 1 model selected 
    8053 
    8054 > select add #1.27
    8055 
    8056 3130 atoms, 543 residues, 2 models selected 
    8057 
    8058 > show sel cartoons
    8059 
    8060 > select subtract #1.27
    8061 
    8062 1588 atoms, 265 residues, 3 models selected 
    8063 
    8064 > select subtract #1.21
    8065 
    8066 1 model selected 
    8067 
    8068 > show #!3 models
    8069 
    8070 > color zone #3 near #1 distance 5.58
    8071 
    8072 > volume splitbyzone #3
    8073 
    8074 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 0 as #9.1, grid size
    8075 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8076 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 1 as #9.2, grid size
    8077 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8078 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 2 as #9.3, grid size
    8079 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8080 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 3 as #9.4, grid size
    8081 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8082 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 4 as #9.5, grid size
    8083 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8084 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 5 as #9.6, grid size
    8085 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8086 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 6 as #9.7, grid size
    8087 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8088 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 7 as #9.8, grid size
    8089 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8090 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 8 as #9.9, grid size
    8091 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8092 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 9 as #9.10, grid size
    8093 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8094 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 10 as #9.11, grid size
    8095 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8096 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 11 as #9.12, grid size
    8097 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8098 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 12 as #9.13, grid size
    8099 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8100 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 13 as #9.14, grid size
    8101 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8102 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 14 as #9.15, grid size
    8103 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8104 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 15 as #9.16, grid size
    8105 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8106 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 16 as #9.17, grid size
    8107 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8108 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 17 as #9.18, grid size
    8109 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8110 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 18 as #9.19, grid size
    8111 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8112 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 19 as #9.20, grid size
    8113 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8114 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 20 as #9.21, grid size
    8115 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8116 Opened J546_state1_synthasis_Fo_3.52A_14.82w.mrc 21 as #9.22, grid size
    8117 400,400,400, pixel 0.93, shown at level 0.106, step 1, values float32 
    8118 
    8119 > volume #9.17 color #228b2226
    8120 
    8121 > ui mousemode right "map eraser"
    8122 
    8123 > color zone #3 near #1 distance 5.46
    8124 
    8125 > color zone #3 near #1 distance 1.16
    8126 
    8127 Can only have one displayed volume when erasing 
    8128 
    8129 [Repeated 3 time(s)]
    8130 
    8131 > volume erase #9.17 center 152.43,174.17,258.92 radius 19.158
    8132 
    8133 > volume erase #9.17 center 153.75,161.59,282.41 radius 19.158
    8134 
    8135 > volume erase #9.17 center 173.67,140.98,285.93 radius 19.158
    8136 
    8137 > volume erase #9.17 center 214.92,154.35,251.25 radius 19.158
    8138 
    8139 > volume erase #9.17 center 189.54,139.56,230.38 radius 19.158
    8140 
    8141 > volume erase #9.17 center 161.94,132.72,255.5 radius 19.158
    8142 
    8143 > volume erase #9.17 center 165.94,129.39,251.54 radius 19.158
    8144 
    8145 > volume erase #9.17 center 219.48,213.42,266.64 radius 19.158
    8146 
    8147 > volume erase #9.17 center 222.62,211.3,261.28 radius 19.158
    8148 
    8149 > volume erase #9.17 center 201.59,143.68,253.31 radius 19.158
    8150 
    8151 > volume erase #9.17 center 175.09,146.43,234.13 radius 19.158
    8152 
    8153 > volume erase #9.17 center 146.96,145.6,254.29 radius 19.158
    8154 
    8155 > volume erase #9.17 center 152.14,200.47,260.87 radius 19.158
    8156 
    8157 > volume erase #9.17 center 190.15,234.78,248.78 radius 19.158
    8158 
    8159 > volume erase #9.17 center 208.66,210.82,271.16 radius 19.158
    8160 
    8161 > volume erase #9.17 center 184.43,226.41,289.75 radius 19.158
    8162 
    8163 > volume erase #9.17 center 187.4,240.87,276.81 radius 19.158
    8164 
    8165 > volume erase #9.17 center 151.67,225.5,267.55 radius 19.158
    8166 
    8167 > volume erase #9.17 center 187.86,206.62,234.8 radius 19.158
    8168 
    8169 > volume erase #9.17 center 176.45,240.53,245.58 radius 19.158
    8170 
    8171 > volume erase #9.17 center 164.05,207.38,291.8 radius 19.158
    8172 
    8173 > volume erase #9.17 center 174.07,217.65,283.92 radius 19.158
    8174 
    8175 > volume erase #9.17 center 157.44,141.71,273.58 radius 19.158
    8176 
    8177 > volume erase #9.17 center 205.82,146.87,282.2 radius 19.158
    8178 
    8179 > volume erase #9.17 center 210.51,210.58,302.68 radius 19.158
    8180 
    8181 > volume erase #9.17 center 172.25,216.53,237.66 radius 19.158
    8182 
    8183 > volume erase #9.17 center 169.46,209.2,240.77 radius 19.158
    8184 
    8185 > volume erase #9.17 center 173.94,234.22,258.62 radius 19.158
    8186 
    8187 > volume erase #9.17 center 181.73,229.18,264.5 radius 19.158
    8188 
    8189 > volume erase #9.17 center 169.94,155.29,236.77 radius 19.158
    8190 
    8191 > volume erase #9.17 center 155.37,158.7,264.92 radius 19.158
    8192 
    8193 > volume erase #9.17 center 177.66,127.42,250.24 radius 19.158
    8194 
    8195 > volume erase #9.17 center 158.83,130.61,239.24 radius 19.158
    8196 
    8197 > volume erase #9.17 center 212.13,147.59,256.04 radius 19.158
    8198 
    8199 > volume erase #9.17 center 192.4,127.04,250.84 radius 19.158
    8200 
    8201 > volume erase #9.17 center 190.29,130.33,251.54 radius 19.158
    8202 
    8203 > volume erase #9.17 center 204.59,208.99,283.98 radius 19.158
    8204 
    8205 > volume erase #9.17 center 187.77,212.27,256.33 radius 6.882
    8206 
    8207 > volume erase #9.17 center 193.69,215,255.53 radius 6.882
    8208 
    8209 > volume erase #9.17 center 194.62,211.78,255.47 radius 6.882
    8210 
    8211 > volume erase #9.17 center 180.75,209.09,252.83 radius 6.882
    8212 
    8213 > volume erase #9.17 center 170.21,213.47,264.81 radius 6.882
    8214 
    8215 > volume erase #9.17 center 168.33,212.78,263.85 radius 6.882
    8216 
    8217 > volume erase #9.17 center 168.44,204.13,263.27 radius 6.882
    8218 
    8219 > volume erase #9.17 center 172.82,196.61,273.72 radius 6.882
    8220 
    8221 > volume erase #9.17 center 190.83,210.71,259.96 radius 6.882
    8222 
    8223 > volume erase #9.17 center 171.54,201.29,268.16 radius 6.882
    8224 
    8225 > volume erase #9.17 center 174.54,211.12,257.86 radius 6.882
    8226 
    8227 > volume erase #9.17 center 172,211.23,261.44 radius 6.882
    8228 
    8229 > volume erase #9.17 center 182.86,208.02,253.73 radius 6.882
    8230 
    8231 > volume erase #9.17 center 178.01,210.41,254.54 radius 6.882
    8232 
    8233 > volume erase #9.17 center 189.64,203.09,265.12 radius 3.534
    8234 
    8235 > volume erase #9.17 center 189.22,205.57,265.53 radius 3.534
    8236 
    8237 > volume erase #9.17 center 188.71,205.82,265.38 radius 3.534
    8238 
    8239 > volume erase #9.17 center 188.45,204.8,265.02 radius 3.534
    8240 
    8241 > volume erase #9.17 center 189.33,209.68,269.7 radius 3.534
    8242 
    8243 > volume erase #9.17 center 189.57,204.42,269.41 radius 3.534
    8244 
    8245 > volume erase #9.17 center 187.92,203.87,268.41 radius 3.534
    8246 
    8247 > volume erase #9.17 center 188.87,208.36,272.62 radius 3.534
    8248 
    8249 > volume erase #9.17 center 178.66,201.46,269.96 radius 3.534
    8250 
    8251 > volume erase #9.17 center 175.41,205.33,266.51 radius 3.534
    8252 
    8253 > volume erase #9.17 center 175.35,202.29,266.21 radius 3.534
    8254 
    8255 > volume erase #9.17 center 175.21,209.99,266.38 radius 3.534
    8256 
    8257 > volume erase #9.17 center 176.57,208.71,265.3 radius 3.534
    8258 
    8259 > undo
    8260 
    8261 > volume erase #9.17 center 174.1,160.84,260.26 radius 3.534
    8262 
    8263 > volume erase #9.17 center 173.62,150.17,257.32 radius 3.534
    8264 
    8265 > volume erase #9.17 center 178.44,147.87,255.11 radius 3.534
    8266 
    8267 > volume erase #9.17 center 177.46,144.05,262.45 radius 6.138
    8268 
    8269 > volume erase #9.17 center 187.16,144.91,265.74 radius 6.138
    8270 
    8271 > volume erase #9.17 center 178.72,143.64,266.97 radius 6.138
    8272 
    8273 > volume erase #9.17 center 174.72,144.39,267.55 radius 6.138
    8274 
    8275 > volume erase #9.17 center 184.24,143.74,260.01 radius 6.138
    8276 
    8277 > volume erase #9.17 center 178.58,149.45,271.81 radius 6.138
    8278 
    8279 > volume erase #9.17 center 188.85,148.87,268.7 radius 6.138
    8280 
    8281 > volume erase #9.17 center 194.67,148.29,267.3 radius 6.138
    8282 
    8283 > volume erase #9.17 center 185.16,146.15,274.14 radius 6.138
    8284 
    8285 > volume erase #9.17 center 189.87,155.34,246.5 radius 6.138
    8286 
    8287 > volume erase #9.17 center 185.27,153.7,249.93 radius 6.138
    8288 
    8289 > volume erase #9.17 center 180.63,153.4,249.85 radius 6.138
    8290 
    8291 > volume erase #9.17 center 172.1,152.35,253.37 radius 6.138
    8292 
    8293 > volume erase #9.17 center 180.4,149.7,253.14 radius 6.138
    8294 
    8295 > volume erase #9.17 center 182.05,147.51,256.42 radius 6.138
    8296 
    8297 > volume erase #9.17 center 174.18,158.85,280.12 radius 6.138
    8298 
    8299 > volume erase #9.17 center 190.24,152.7,260.54 radius 6.138
    8300 
    8301 > volume erase #9.17 center 183.35,148.58,269.85 radius 6.138
    8302 
    8303 > volume erase #9.17 center 168.89,153.93,268.14 radius 6.138
    8304 
    8305 > volume erase #9.17 center 170.22,163.27,261.84 radius 6.138
    8306 
    8307 > volume erase #9.17 center 172.78,146.62,264.18 radius 6.138
    8308 
    8309 > volume erase #9.17 center 172.3,159.1,268.25 radius 6.138
    8310 
    8311 > volume erase #9.17 center 176.79,165.54,279.84 radius 6.138
    8312 
    8313 > volume erase #9.17 center 168.04,159.46,256.93 radius 6.138
    8314 
    8315 > volume erase #9.17 center 170.91,155.78,254.37 radius 6.138
    8316 
    8317 > volume erase #9.17 center 194.02,154.01,257.87 radius 6.138
    8318 
    8319 > volume erase #9.17 center 195.18,156.17,260.96 radius 6.138
    8320 
    8321 > volume erase #9.17 center 186.13,148.92,261.48 radius 2.046
    8322 
    8323 > ui tool show "Side View"
    8324 
    8325 > view
    8326 
    8327 > volume erase #9.17 center 185.47,151.71,264.21 radius 2.046
    8328 
    8329 > volume erase #9.17 center 184.33,153.52,266.53 radius 2.046
    8330 
    8331 > volume erase #9.17 center 185.22,151.18,263.04 radius 2.046
    8332 
    8333 > volume erase #9.17 center 183.72,151.59,262.72 radius 2.046
    8334 
    8335 > volume erase #9.17 center 185.28,153.23,262.99 radius 2.046
    8336 
    8337 > volume erase #9.17 center 184.9,155.85,263.52 radius 2.046
    8338 
    8339 > volume erase #9.17 center 184.9,155.85,263.52 radius 2.604
    8340 
    8341 > volume erase #9.17 center 183.67,152.73,263.6 radius 2.604
    8342 
    8343 > view
    8344 
    8345 > style #1#9.17#!9 stick
    8346 
    8347 Changed 37992 atom styles 
    8348 
    8349 > open
    8350 > /Users/wujingyi/Desktop/RfxATPasePDB+map_new/RfxATPase_PDB/J436_state1_synthasis_2.82A_14.82w-coot-3.pdb
    8351 
    8352 Summary of feedback from opening
    8353 /Users/wujingyi/Desktop/RfxATPasePDB+map_new/RfxATPase_PDB/J436_state1_synthasis_2.82A_14.82w-coot-3.pdb 
    8354 --- 
    8355 warning | Cannot find LINK/SSBOND residue CYS (40 ) 
    8356  
    8357 Chain information for J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #11 
    8358 --- 
    8359 Chain | Description 
    8360 A | No description available 
    8361 B | No description available 
    8362 C | No description available 
    8363 D | No description available 
    8364 E | No description available 
    8365 F | No description available 
    8366 G | No description available 
    8367 H L O P | No description available 
    8368 I | No description available 
    8369 J K M N | No description available 
    8370 Q | No description available 
    8371 R | No description available 
    8372 S W | No description available 
    8373 T | No description available 
    8374 U | No description available 
    8375 V | No description available 
    8376 X | No description available 
    8377 Y | No description available 
    8378 Z | No description available 
    8379  
    8380 4 atoms have alternate locations. Control/examine alternate locations with
    8381 Altloc Explorer [start tool...] or the altlocs command. 
    8382 
    8383 > hide #!1,11 atoms
    8384 
    8385 > show #!1,11 cartoons
    8386 
    8387 > select add #1
    8388 
    8389 37992 atoms, 38497 bonds, 3 pseudobonds, 5372 residues, 2 models selected 
    8390 
    8391 > show sel surfaces
    8392 
    8393 > hide sel surfaces
    8394 
    8395 > select subtract #1.26
    8396 
    8397 37240 atoms, 37746 bonds, 3 pseudobonds, 5221 residues, 28 models selected 
    8398 
    8399 > select subtract #1.25
    8400 
    8401 36498 atoms, 37005 bonds, 3 pseudobonds, 5072 residues, 27 models selected 
    8402 
    8403 > select subtract #1.24
    8404 
    8405 36133 atoms, 36641 bonds, 3 pseudobonds, 4998 residues, 26 models selected 
    8406 
    8407 > select subtract #1.23
    8408 
    8409 35375 atoms, 35884 bonds, 3 pseudobonds, 4847 residues, 25 models selected 
    8410 
    8411 > select subtract #1.22
    8412 
    8413 34628 atoms, 35138 bonds, 3 pseudobonds, 4697 residues, 24 models selected 
    8414 
    8415 > select subtract #1.20
    8416 
    8417 34263 atoms, 34774 bonds, 3 pseudobonds, 4623 residues, 23 models selected 
    8418 
    8419 > select subtract #1.19
    8420 
    8421 33183 atoms, 33684 bonds, 3 pseudobonds, 4485 residues, 22 models selected 
    8422 
    8423 > select subtract #1.2
    8424 
    8425 29378 atoms, 29821 bonds, 3 pseudobonds, 3987 residues, 21 models selected 
    8426 
    8427 > select subtract #1.3
    8428 
    8429 25585 atoms, 25970 bonds, 3 pseudobonds, 3491 residues, 20 models selected 
    8430 
    8431 > select subtract #1.4
    8432 
    8433 21763 atoms, 22090 bonds, 3 pseudobonds, 2991 residues, 19 models selected 
    8434 
    8435 > select subtract #1.5
    8436 
    8437 18169 atoms, 18433 bonds, 3 pseudobonds, 2522 residues, 18 models selected 
    8438 
    8439 > select subtract #1.6
    8440 
    8441 14564 atoms, 14765 bonds, 3 pseudobonds, 2052 residues, 17 models selected 
    8442 
    8443 > select subtract #1.7
    8444 
    8445 10978 atoms, 11116 bonds, 3 pseudobonds, 1584 residues, 16 models selected 
    8446 
    8447 > select subtract #1.8
    8448 
    8449 8696 atoms, 8806 bonds, 3 pseudobonds, 1295 residues, 15 models selected 
    8450 
    8451 > hide sel cartoons
    8452 
    8453 Cell requested for row 10 is out of bounds for table with 38 rows! Resizing
    8454 table model. 
    8455 
    8456 > hide #!11 models
    8457 
    8458 > show #!11 models
    8459 
    8460 > hide #!1 models
    8461 
    8462 > select add #11
    8463 
    8464 46688 atoms, 47303 bonds, 6 pseudobonds, 6667 residues, 16 models selected 
    8465 
    8466 > show sel & #!11 surfaces
    8467 
    8468 > hide sel & #!11 surfaces
    8469 
    8470 > select subtract #11
    8471 
    8472 8696 atoms, 8806 bonds, 3 pseudobonds, 1295 residues, 40 models selected 
    8473 
    8474 > select add #11.2
    8475 
    8476 12501 atoms, 8806 bonds, 3 pseudobonds, 1793 residues, 15 models selected 
    8477 
    8478 > select add #11.3
    8479 
    8480 16294 atoms, 8806 bonds, 3 pseudobonds, 2289 residues, 16 models selected 
    8481 
    8482 > select add #11.4
    8483 
    8484 20116 atoms, 8806 bonds, 3 pseudobonds, 2789 residues, 17 models selected 
    8485 
    8486 > select add #11.6
    8487 
    8488 23721 atoms, 8806 bonds, 3 pseudobonds, 3259 residues, 18 models selected 
    8489 
    8490 > select add #11.5
    8491 
    8492 27315 atoms, 8806 bonds, 3 pseudobonds, 3728 residues, 19 models selected 
    8493 
    8494 > select add #11.7
    8495 
    8496 30901 atoms, 8806 bonds, 3 pseudobonds, 4196 residues, 20 models selected 
    8497 
    8498 > select add #11.8
    8499 
    8500 33183 atoms, 8806 bonds, 3 pseudobonds, 4485 residues, 21 models selected 
    8501 
    8502 > select add #11.19
    8503 
    8504 34263 atoms, 8806 bonds, 3 pseudobonds, 4623 residues, 22 models selected 
    8505 
    8506 > select add #11.20
    8507 
    8508 34628 atoms, 8806 bonds, 3 pseudobonds, 4697 residues, 23 models selected 
    8509 
    8510 > select add #11.24
    8511 
    8512 34993 atoms, 8806 bonds, 3 pseudobonds, 4771 residues, 24 models selected 
    8513 
    8514 > select add #11.26
    8515 
    8516 35745 atoms, 8806 bonds, 3 pseudobonds, 4922 residues, 25 models selected 
    8517 
    8518 > select add #11.25
    8519 
    8520 36487 atoms, 8806 bonds, 3 pseudobonds, 5071 residues, 26 models selected 
    8521 
    8522 > select add #11.22
    8523 
    8524 37234 atoms, 8806 bonds, 3 pseudobonds, 5221 residues, 27 models selected 
    8525 
    8526 > select add #11.23
    8527 
    8528 37992 atoms, 8806 bonds, 3 pseudobonds, 5372 residues, 28 models selected 
    8529 
    8530 > hide sel & #!11 cartoons
    8531 
    8532 > select add #11
    8533 
    8534 46688 atoms, 47303 bonds, 6 pseudobonds, 6667 residues, 30 models selected 
    8535 
    8536 > select subtract #11
    8537 
    8538 8696 atoms, 8806 bonds, 3 pseudobonds, 1295 residues, 40 models selected 
    8539 
    8540 > select add #11.27
    8541 
    8542 10238 atoms, 8806 bonds, 3 pseudobonds, 1573 residues, 15 models selected 
    8543 
    8544 > select add #11.21
    8545 
    8546 11826 atoms, 8806 bonds, 3 pseudobonds, 1838 residues, 16 models selected 
    8547 
    8548 > color (#!11 & sel) forest green
    8549 
    8550 > select subtract #11.21
    8551 
    8552 10238 atoms, 8806 bonds, 3 pseudobonds, 1573 residues, 17 models selected 
    8553 
    8554 > select subtract #11.27
    8555 
    8556 8696 atoms, 8806 bonds, 3 pseudobonds, 1295 residues, 15 models selected 
    8557 
    8558 > select add #11.18
    8559 
    8560 9223 atoms, 8806 bonds, 3 pseudobonds, 1368 residues, 15 models selected 
    8561 
    8562 > select add #11.17
    8563 
    8564 9766 atoms, 8806 bonds, 3 pseudobonds, 1443 residues, 16 models selected 
    8565 
    8566 > select add #11.16
    8567 
    8568 10309 atoms, 8806 bonds, 3 pseudobonds, 1518 residues, 17 models selected 
    8569 
    8570 > select add #11.15
    8571 
    8572 10844 atoms, 8806 bonds, 3 pseudobonds, 1592 residues, 18 models selected 
    8573 
    8574 > select add #11.14
    8575 
    8576 11379 atoms, 8806 bonds, 3 pseudobonds, 1666 residues, 19 models selected 
    8577 
    8578 > select add #11.13
    8579 
    8580 11922 atoms, 8806 bonds, 3 pseudobonds, 1741 residues, 20 models selected 
    8581 
    8582 > select add #11.12
    8583 
    8584 12457 atoms, 8806 bonds, 3 pseudobonds, 1815 residues, 21 models selected 
    8585 
    8586 > select add #11.11
    8587 
    8588 12992 atoms, 8806 bonds, 3 pseudobonds, 1889 residues, 22 models selected 
    8589 
    8590 > select add #11.10
    8591 
    8592 13508 atoms, 8806 bonds, 3 pseudobonds, 1961 residues, 23 models selected 
    8593 
    8594 > select add #11.9
    8595 
    8596 14051 atoms, 8806 bonds, 3 pseudobonds, 2036 residues, 24 models selected 
    8597 
    8598 > color (#!11 & sel) #f5ccdcff
    8599 
    8600 > select add #11
    8601 
    8602 46688 atoms, 47303 bonds, 6 pseudobonds, 6667 residues, 26 models selected 
    8603 
    8604 > select subtract #11
    8605 
    8606 8696 atoms, 8806 bonds, 3 pseudobonds, 1295 residues, 40 models selected 
    8607 
    8608 > view
    8609 
    8610 > color zone #3 near #1 distance 1.06
    8611 
    8612 > color zone #3 near #1 distance 0.96
    8613 
    8614 > color zone #3 near #1 distance 0.95
    8615 
    8616 > ui mousemode right select
    8617 
    8618 > select #11/T:259
    8619 
    8620 11 atoms, 10 bonds, 1 residue, 1 model selected 
    8621 
    8622 > show sel atoms
    8623 
    8624 > select #11/Z:259
    8625 
    8626 11 atoms, 10 bonds, 1 residue, 1 model selected 
    8627 
    8628 > show sel atoms
    8629 
    8630 > select clear
    8631 
    8632 > style #11#!9 stick
    8633 
    8634 Changed 37992 atom styles 
    8635 Drag select of 74 residues 
    8636 Drag select of 85 residues 
    8637 Alignment identifier is 11/I 
    8638 Alignment identifier is 11/Q 
    8639 Alignment identifier is 1 
    8640 Alignment identifier is 2 
    8641 
    8642 > select #11/I:3
    8643 
    8644 8 atoms, 7 bonds, 1 residue, 1 model selected 
    8645 
    8646 > select #11/I
    8647 
    8648 516 atoms, 524 bonds, 72 residues, 1 model selected 
    8649 
    8650 > hide sel cartoons
    8651 
    8652 > select #11/N,M,K,J:3
    8653 
    8654 32 atoms, 28 bonds, 4 residues, 1 model selected 
    8655 
    8656 > select #11/N,M,K,J
    8657 
    8658 2140 atoms, 2172 bonds, 296 residues, 1 model selected 
    8659 
    8660 > hide sel cartoons
    8661 
    8662 > select #11/P,O,L,H:3
    8663 
    8664 32 atoms, 28 bonds, 4 residues, 1 model selected 
    8665 
    8666 > select #11/P,O,L,H
    8667 
    8668 2172 atoms, 2204 bonds, 300 residues, 1 model selected 
    8669 
    8670 > hide sel cartoons
    8671 
    8672 > select #11/Q:3
    8673 
    8674 8 atoms, 7 bonds, 1 residue, 1 model selected 
    8675 
    8676 > select #11/Q
    8677 
    8678 527 atoms, 535 bonds, 73 residues, 1 model selected 
    8679 
    8680 > hide sel cartoons
    8681 
    8682 > select #11/N,M,K,J:58
    8683 
    8684 28 atoms, 24 bonds, 4 residues, 1 model selected 
    8685 
    8686 > select #11/N,M,K,J:58-61
    8687 
    8688 116 atoms, 112 bonds, 16 residues, 1 model selected 
    8689 
    8690 > show sel cartoons
    8691 
    8692 > select #11/P,O,L,H:58
    8693 
    8694 28 atoms, 24 bonds, 4 residues, 1 model selected 
    8695 
    8696 > select #11/P,O,L,H:58-61
    8697 
    8698 116 atoms, 112 bonds, 16 residues, 1 model selected 
    8699 
    8700 > show sel cartoons
    8701 
    8702 > select #11/Q:58
    8703 
    8704 7 atoms, 6 bonds, 1 residue, 1 model selected 
    8705 
    8706 > select #11/Q:58-61
    8707 
    8708 29 atoms, 28 bonds, 4 residues, 1 model selected 
    8709 
    8710 > show sel cartoons
    8711 
    8712 > select #11/I:58
    8713 
    8714 7 atoms, 6 bonds, 1 residue, 1 model selected 
    8715 
    8716 > select #11/I:58-61
    8717 
    8718 29 atoms, 28 bonds, 4 residues, 1 model selected 
    8719 
    8720 > show sel cartoons
    8721 
    8722 > select clear
    8723 
    8724 > lighting soft
    8725 
    8726 > select #11/I:59
    8727 
    8728 9 atoms, 8 bonds, 1 residue, 1 model selected 
    8729 
    8730 > select #11/I:59
    8731 
    8732 9 atoms, 8 bonds, 1 residue, 1 model selected 
    8733 
    8734 > select #11/Q:58-61
    8735 
    8736 29 atoms, 28 bonds, 4 residues, 1 model selected 
    8737 
    8738 > select #11/Q:59
    8739 
    8740 9 atoms, 8 bonds, 1 residue, 1 model selected 
    8741 
    8742 > select #11/Q:59
    8743 
    8744 9 atoms, 8 bonds, 1 residue, 1 model selected 
    8745 
    8746 > show sel atoms
    8747 
    8748 > select #11/I:4-39,41-73
    8749 
    8750 489 atoms, 495 bonds, 69 residues, 1 model selected 
    8751 
    8752 > select #11/I:59
    8753 
    8754 9 atoms, 8 bonds, 1 residue, 1 model selected 
    8755 
    8756 > select #11/I:59
    8757 
    8758 9 atoms, 8 bonds, 1 residue, 1 model selected 
    8759 
    8760 > show sel atoms
    8761 
    8762 > select #11/P,O,L,H:59
    8763 
    8764 36 atoms, 32 bonds, 4 residues, 1 model selected 
    8765 
    8766 > select #11/P,O,L,H:59
    8767 
    8768 36 atoms, 32 bonds, 4 residues, 1 model selected 
    8769 
    8770 > show sel atoms
    8771 
    8772 > select #11/N,M,K,J:59
    8773 
    8774 36 atoms, 32 bonds, 4 residues, 1 model selected 
    8775 
    8776 > select #11/N,M,K,J:59
    8777 
    8778 36 atoms, 32 bonds, 4 residues, 1 model selected 
    8779 
    8780 > show sel atoms
    8781 
    8782 > select clear
    8783 
    8784 > show #!1 models
    8785 
    8786 > select add #1.2
    8787 
    8788 3805 atoms, 498 residues, 1 model selected 
    8789 
    8790 > select add #1.3
    8791 
    8792 7598 atoms, 994 residues, 2 models selected 
    8793 
    8794 > select add #1.4
    8795 
    8796 11420 atoms, 1494 residues, 3 models selected 
    8797 
    8798 > select add #1.5
    8799 
    8800 15014 atoms, 1963 residues, 4 models selected 
    8801 
    8802 > select add #1.6
    8803 
    8804 18619 atoms, 2433 residues, 5 models selected 
    8805 
    8806 > select add #1.7
    8807 
    8808 22205 atoms, 2901 residues, 6 models selected 
    8809 
    8810 > select add #1.8
    8811 
    8812 24487 atoms, 3190 residues, 7 models selected 
    8813 
    8814 > select add #1.9
    8815 
    8816 25030 atoms, 3265 residues, 8 models selected 
    8817 
    8818 > select add #1.10
    8819 
    8820 25546 atoms, 3337 residues, 9 models selected 
    8821 
    8822 > select subtract #1.10
    8823 
    8824 25030 atoms, 3265 residues, 10 models selected 
    8825 
    8826 > select subtract #1.9
    8827 
    8828 24487 atoms, 3190 residues, 9 models selected 
    8829 
    8830 > hide sel cartoons
    8831 
    8832 > select add #1.19
    8833 
    8834 25567 atoms, 3328 residues, 8 models selected 
    8835 
    8836 > select add #1.20
    8837 
    8838 25932 atoms, 3402 residues, 9 models selected 
    8839 
    8840 > select add #1.24
    8841 
    8842 26297 atoms, 3476 residues, 10 models selected 
    8843 
    8844 > select add #1.22
    8845 
    8846 27044 atoms, 3626 residues, 11 models selected 
    8847 
    8848 > select add #1.23
    8849 
    8850 27802 atoms, 3777 residues, 12 models selected 
    8851 
    8852 > select add #1.25
    8853 
    8854 28544 atoms, 3926 residues, 13 models selected 
    8855 
    8856 > select add #1.26
    8857 
    8858 29296 atoms, 4077 residues, 14 models selected 
    8859 
    8860 > hide sel cartoons
    8861 
    8862 > select add #1
    8863 
    8864 37992 atoms, 38497 bonds, 3 pseudobonds, 5372 residues, 16 models selected 
    8865 
    8866 > select subtract #1
    8867 
    8868 26 models selected 
    8869 
    8870 > select add #1.21
    8871 
    8872 1588 atoms, 265 residues, 1 model selected 
    8873 
    8874 > show sel cartoons
    8875 
    8876 > select subtract #1.21
    8877 
    8878 1 model selected 
    8879 
    8880 > select add #1.27
    8881 
    8882 1542 atoms, 278 residues, 1 model selected 
    8883 
    8884 > show sel cartoons
    8885 
    8886 > select subtract #1.27
    8887 
    8888 1 model selected 
    8889 
    8890 > select add #11.21
    8891 
    8892 1588 atoms, 265 residues, 1 model selected 
    8893 
    8894 > select add #11.27
    8895 
    8896 3130 atoms, 543 residues, 2 models selected 
    8897 
    8898 > hide sel cartoons
    8899 
    8900 > select subtract #11.21
    8901 
    8902 1542 atoms, 278 residues, 3 models selected 
    8903 
    8904 > select subtract #11.27
    8905 
    8906 1 model selected 
    8907 
    8908 > select add #1
    8909 
    8910 37992 atoms, 38497 bonds, 3 pseudobonds, 5372 residues, 2 models selected 
    8911 
    8912 > cartoon style (#!1 & sel) modeHelix tube sides 20
    8913 
    8914 > select subtract #1
    8915 
    8916 26 models selected 
    8917 
    8918 > color #1,11#!9 byhetero
    8919 
    8920 > select clear
    8921 
    8922 [Repeated 1 time(s)]
    8923 
    8924 > volume #9.12 color #f5ccdc27
    8925 
    8926 > ui mousemode right "map eraser"
    8927 
    8928 Can only have one displayed volume when erasing 
    8929 
    8930 > volume erase #9.12 center 184.1,172.1,227.7 radius 15.252
    8931 
    8932 > volume erase #9.12 center 184.32,173.74,226.15 radius 21.39
    8933 
    8934 > volume erase #9.12 center 186.52,200.84,224.47 radius 21.39
    8935 
    8936 > volume erase #9.12 center 185.09,179.62,220.84 radius 21.39
    8937 
    8938 > volume erase #9.12 center 170.15,177.87,222.26 radius 21.39
    8939 
    8940 > volume erase #9.12 center 215.69,164.39,225.17 radius 21.39
    8941 
    8942 > volume erase #9.12 center 216.27,170.95,228.22 radius 21.39
    8943 
    8944 > volume erase #9.12 center 219.37,188.32,232.19 radius 21.39
    8945 
    8946 > volume erase #9.12 center 221.77,198.05,232.67 radius 21.39
    8947 
    8948 > volume erase #9.12 center 199.82,151.87,227.61 radius 21.39
    8949 
    8950 > volume erase #9.12 center 210.63,174.67,229.21 radius 21.39
    8951 
    8952 > volume erase #9.12 center 189.58,200.46,228.62 radius 21.39
    8953 
    8954 > volume erase #9.12 center 201.15,199.61,227.53 radius 21.39
    8955 
    8956 > volume erase #9.12 center 169.94,190.74,229.69 radius 21.39
    8957 
    8958 > volume erase #9.12 center 169.7,163.35,224.36 radius 21.39
    8959 
    8960 > volume erase #9.12 center 169.9,173.13,228.26 radius 21.39
    8961 
    8962 > volume erase #9.12 center 170.12,179.65,296.99 radius 21.39
    8963 
    8964 > volume erase #9.12 center 176.61,190.26,292.89 radius 21.39
    8965 
    8966 > volume erase #9.12 center 185.4,157.68,290.36 radius 21.39
    8967 
    8968 > volume erase #9.12 center 213.28,183.99,298.98 radius 21.39
    8969 
    8970 > volume erase #9.12 center 213.03,159.31,289.71 radius 21.39
    8971 
    8972 > volume erase #9.12 center 208.87,201.17,291.62 radius 21.39
    8973 
    8974 > volume erase #9.12 center 215.87,170.23,292.11 radius 21.39
    8975 
    8976 > volume erase #9.12 center 196.57,176.8,291.69 radius 21.39
    8977 
    8978 > volume erase #9.12 center 191.52,210.19,292.08 radius 21.39
    8979 
    8980 > volume erase #9.12 center 171.81,170.99,288.63 radius 21.39
    8981 
    8982 > volume erase #9.12 center 210.68,175.67,289.23 radius 21.39
    8983 
    8984 > volume erase #9.12 center 206.45,189.34,233.5 radius 21.39
    8985 
    8986 > volume erase #9.12 center 209.93,175.44,233.17 radius 21.39
    8987 
    8988 > volume erase #9.12 center 200.8,206.37,235.59 radius 21.39
    8989 
    8990 > volume erase #9.12 center 183.1,160.4,230.21 radius 21.39
    8991 
    8992 > volume erase #9.12 center 175.47,172.03,232.27 radius 21.39
    8993 
    8994 > volume erase #9.12 center 160.52,176.91,233.03 radius 21.39
    8995 
    8996 > volume erase #9.12 center 166.54,188.87,234.37 radius 21.39
    8997 
    8998 > volume erase #9.12 center 189.24,182.31,255.42 radius 7.812
    8999 
    9000 > volume erase #9.12 center 188.92,183.04,248.3 radius 7.812
    9001 
    9002 > volume erase #9.12 center 187.49,182.01,258.55 radius 7.812
    9003 
    9004 > volume erase #9.12 center 185.79,180.87,262.65 radius 7.812
    9005 
    9006 > volume erase #9.12 center 185.95,179.3,267.44 radius 6.882
    9007 
    9008 > volume erase #9.12 center 185.26,182.54,267.4 radius 6.882
    9009 
    9010 > volume erase #9.12 center 189.69,183.11,267.13 radius 6.882
    9011 
    9012 > volume erase #9.12 center 190.92,180.28,267.14 radius 6.882
    9013 
    9014 > volume erase #9.12 center 215.04,190.21,264.25 radius 6.882
    9015 
    9016 > surface dust #9.12 size 9.3
    9017 
    9018 > volume erase #9.12 center 184.24,174.01,269.49 radius 6.882
    9019 
    9020 > volume erase #9.12 center 191.11,173.89,268.94 radius 9.3
    9021 
    9022 > volume erase #9.12 center 190.48,172.8,268.72 radius 9.3
    9023 
    9024 > volume erase #9.12 center 193.88,181.19,269.01 radius 9.3
    9025 
    9026 > volume erase #9.12 center 187.96,184.06,270.77 radius 9.3
    9027 
    9028 > volume erase #9.12 center 185.52,183.78,269.87 radius 9.3
    9029 
    9030 > volume erase #9.12 center 183.1,182.21,269.56 radius 9.3
    9031 
    9032 > volume erase #9.12 center 184.72,178.47,262.38 radius 9.3
    9033 
    9034 > volume erase #9.12 center 185.13,178.34,260.06 radius 9.3
    9035 
    9036 > volume erase #9.12 center 188.45,179.77,258.99 radius 9.3
    9037 
    9038 > volume erase #9.12 center 189.45,182.63,259.39 radius 9.3
    9039 
    9040 > volume erase #9.12 center 187.75,185.93,259.34 radius 9.3
    9041 
    9042 > volume erase #9.12 center 183.66,183.86,258.44 radius 9.3
    9043 
    9044 > volume erase #9.12 center 184.18,178.26,255.5 radius 9.3
    9045 
    9046 > volume erase #9.12 center 192.37,182.56,255.04 radius 9.3
    9047 
    9048 > volume erase #9.12 center 192.09,179.03,255.86 radius 9.3
    9049 
    9050 > volume erase #9.12 center 184.66,187.36,250.02 radius 9.3
    9051 
    9052 > volume erase #9.12 center 177.46,188.32,248.92 radius 9.3
    9053 
    9054 > volume erase #9.12 center 187.86,175.68,260.08 radius 9.3
    9055 
    9056 > volume erase #9.12 center 184.25,176.71,260.31 radius 9.3
    9057 
    9058 > volume erase #9.12 center 189.78,175.3,251.29 radius 9.3
    9059 
    9060 > volume erase #9.12 center 193.96,181.47,255.43 radius 9.3
    9061 
    9062 > volume erase #9.12 center 193.73,183.07,258.27 radius 9.3
    9063 
    9064 > volume erase #9.12 center 192.98,179.02,257.36 radius 9.3
    9065 
    9066 > volume erase #9.12 center 183.39,200.21,279.43 radius 9.3
    9067 
    9068 > volume erase #9.12 center 172.34,194.09,277.6 radius 9.3
    9069 
    9070 > volume erase #9.12 center 166.7,183.16,275.79 radius 9.3
    9071 
    9072 > volume erase #9.12 center 167.25,189.29,276.18 radius 9.3
    9073 
    9074 > volume erase #9.12 center 175.93,157.41,272.95 radius 9.3
    9075 
    9076 > volume erase #9.12 center 172.21,159.67,272.12 radius 9.3
    9077 
    9078 > volume erase #9.12 center 160.83,175.29,272.1 radius 9.3
    9079 
    9080 > volume erase #9.12 center 197.05,158.92,273.59 radius 9.3
    9081 
    9082 > volume erase #9.12 center 185.44,160.03,273.73 radius 9.3
    9083 
    9084 > volume erase #9.12 center 203.92,166.03,275.21 radius 9.3
    9085 
    9086 > volume erase #9.12 center 206.96,192,276.94 radius 9.3
    9087 
    9088 > volume erase #9.12 center 193.11,199.4,277.69 radius 9.3
    9089 
    9090 > volume erase #9.12 center 181.19,180.13,268.05 radius 9.3
    9091 
    9092 > volume erase #9.12 center 187.06,185.68,265.92 radius 9.3
    9093 
    9094 > volume erase #9.12 center 183.64,184.63,262.57 radius 9.3
    9095 
    9096 > volume erase #9.12 center 154.78,187.08,258.92 radius 9.3
    9097 
    9098 > volume erase #9.12 center 209.28,182.52,275.57 radius 9.3
    9099 
    9100 > volume erase #9.12 center 211.12,177.72,275.43 radius 9.3
    9101 
    9102 > volume erase #9.12 center 211.62,173.18,272.77 radius 9.3
    9103 
    9104 > volume erase #9.12 center 201.18,199.48,275.42 radius 9.3
    9105 
    9106 > volume erase #9.12 center 190.27,185.12,264.27 radius 9.3
    9107 
    9108 > volume erase #9.12 center 190.37,185.81,264.28 radius 9.3
    9109 
    9110 > volume erase #9.12 center 192.76,183.8,261.73 radius 9.3
    9111 
    9112 > volume erase #9.12 center 211.01,157.81,252.3 radius 9.3
    9113 
    9114 > volume erase #9.12 center 197.77,162.56,247.3 radius 6.138
    9115 
    9116 > volume erase #9.12 center 194.95,174.09,254.2 radius 6.138
    9117 
    9118 > volume erase #9.12 center 194.54,175.08,258.85 radius 6.138
    9119 
    9120 > volume erase #9.12 center 198.16,180.12,259.16 radius 6.138
    9121 
    9122 > volume erase #9.12 center 178.51,176.9,258 radius 6.138
    9123 
    9124 > volume erase #9.12 center 186.02,194.42,251.21 radius 6.138
    9125 
    9126 > volume erase #9.12 center 180.91,201.48,247.92 radius 6.138
    9127 
    9128 > volume erase #9.12 center 177.32,202.11,251.5 radius 6.138
    9129 
    9130 > volume erase #9.12 center 189.36,204.86,251.93 radius 6.138
    9131 
    9132 > volume erase #9.12 center 196.64,165.41,246.98 radius 6.138
    9133 
    9134 > volume erase #9.12 center 202.11,164.05,248.42 radius 6.138
    9135 
    9136 > volume erase #9.12 center 188.59,163.81,247.75 radius 6.138
    9137 
    9138 > volume erase #9.12 center 206.74,177.37,271.52 radius 6.138
    9139 
    9140 > volume erase #9.12 center 207.27,177.56,269.78 radius 6.138
    9141 
    9142 > volume erase #9.12 center 212.56,177.76,269.99 radius 6.138
    9143 
    9144 > volume erase #9.12 center 192.22,190.68,265.26 radius 6.138
    9145 
    9146 > volume erase #9.12 center 203.15,185.1,272.41 radius 6.138
    9147 
    9148 > volume erase #9.12 center 209.61,188.74,255.54 radius 3.348
    9149 
    9150 > volume erase #9.12 center 209.12,176.58,253.99 radius 3.348
    9151 
    9152 > volume erase #9.12 center 205.76,167.23,266.32 radius 3.348
    9153 
    9154 > volume erase #9.12 center 182.43,162.7,250.28 radius 3.348
    9155 
    9156 > volume erase #9.12 center 168.7,180.89,253.17 radius 3.348
    9157 
    9158 > volume erase #9.12 center 165.82,183.19,255.02 radius 3.348
    9159 
    9160 > volume erase #9.12 center 165.69,179.65,253.86 radius 3.348
    9161 
    9162 > volume erase #9.12 center 167.47,164.1,254.65 radius 3.348
    9163 
    9164 > volume erase #9.12 center 168.13,173.05,255.06 radius 1.488
    9165 
    9166 > volume erase #9.12 center 166.62,188.47,256.38 radius 2.232
    9167 
    9168 > volume erase #9.12 center 175.28,197.9,257.61 radius 2.232
    9169 
    9170 > volume erase #9.12 center 175.57,201.08,256.18 radius 2.232
    9171 
    9172 > volume erase #9.12 center 181.09,195.37,272.08 radius 2.232
    9173 
    9174 > volume erase #9.12 center 179.61,196.92,272.58 radius 3.534
    9175 
    9176 > volume erase #9.12 center 169.64,185.02,266.02 radius 2.046
    9177 
    9178 > volume erase #9.12 center 169.92,183.65,267.55 radius 2.046
    9179 
    9180 > volume erase #9.12 center 169.14,184.16,265.41 radius 2.046
    9181 
    9182 > volume erase #9.12 center 171.46,184.85,262.93 radius 2.046
    9183 
    9184 > volume erase #9.12 center 172.44,183.01,263.15 radius 2.046
    9185 
    9186 > volume erase #9.12 center 185.11,197.53,267.64 radius 2.976
    9187 
    9188 > volume erase #9.12 center 198.09,194.54,267.16 radius 2.976
    9189 
    9190 > volume erase #9.12 center 197.15,195.09,267.25 radius 2.976
    9191 
    9192 > volume erase #9.12 center 202.82,187.35,263.76 radius 2.418
    9193 
    9194 > volume erase #9.12 center 202.99,187.65,265.52 radius 2.418
    9195 
    9196 > volume erase #9.12 center 205.72,188.36,266.97 radius 2.418
    9197 
    9198 > volume erase #9.12 center 199.49,168.29,264.78 radius 2.418
    9199 
    9200 > volume erase #9.12 center 189.36,162.93,264.17 radius 2.418
    9201 
    9202 > volume erase #9.12 center 179.94,167.12,262.62 radius 2.418
    9203 
    9204 > volume erase #9.12 center 179.73,165.96,264.92 radius 2.418
    9205 
    9206 > volume erase #9.12 center 172.3,172.9,264.8 radius 2.418
    9207 
    9208 > volume erase #9.12 center 175.74,193.26,267.56 radius 2.418
    9209 
    9210 > volume erase #9.12 center 188.92,163.79,260.56 radius 1.302
    9211 
    9212 > volume erase #9.12 center 188.44,166,260.96 radius 1.302
    9213 
    9214 > volume erase #9.12 center 191.97,158.18,263.11 radius 1.302
    9215 
    9216 > volume erase #9.12 center 193.63,158.15,263.19 radius 1.302
    9217 
    9218 > volume erase #9.12 center 192.76,159.15,264 radius 1.302
    9219 
    9220 > volume erase #9.12 center 198.51,168.88,254.85 radius 1.302
    9221 
    9222 > volume erase #9.12 center 199.71,169.88,255.91 radius 1.302
    9223 
    9224 > volume erase #9.12 center 199.71,169.88,255.91 radius 1.86
    9225 
    9226 > volume erase #9.12 center 204.17,175.8,261.63 radius 1.86
    9227 
    9228 > volume erase #9.12 center 172.2,195.24,256.4 radius 1.86
    9229 
    9230 > volume erase #9.12 center 171.3,193.77,255.96 radius 1.86
    9231 
    9232 > volume erase #9.12 center 200.87,163.58,255.5 radius 1.86
    9233 
    9234 > volume #9.12 level 0.083
    9235 
    9236 > volume erase #9.12 center 207.93,193.98,255.12 radius 4.65
    9237 
    9238 > volume erase #9.12 center 209.68,201.98,257.22 radius 4.65
    9239 
    9240 > volume erase #9.12 center 214.6,177.35,254.25 radius 4.65
    9241 
    9242 > volume erase #9.12 center 216.87,182.4,258.95 radius 4.65
    9243 
    9244 > volume erase #9.12 center 215.86,171.68,257.39 radius 6.696
    9245 
    9246 > volume erase #9.12 center 206.05,204.49,262.94 radius 6.696
    9247 
    9248 > volume erase #9.12 center 193.24,191.28,250.88 radius 6.696
    9249 
    9250 > volume erase #9.12 center 157.95,174.2,259.6 radius 6.696
    9251 
    9252 > volume erase #9.12 center 159.18,169.52,259.77 radius 6.696
    9253 
    9254 > volume erase #9.12 center 186.01,189.41,261.1 radius 6.696
    9255 
    9256 > volume erase #9.12 center 178.73,183.27,253.83 radius 6.696
    9257 
    9258 > volume erase #9.12 center 211.88,182.74,252.48 radius 6.696
    9259 
    9260 > volume erase #9.12 center 207.36,194.07,251.61 radius 6.696
    9261 
    9262 > volume erase #9.12 center 206.13,164.9,251.38 radius 6.696
    9263 
    9264 > volume erase #9.12 center 207.78,170.34,248.51 radius 6.696
    9265 
    9266 > volume erase #9.12 center 201.27,202.03,253.51 radius 6.696
    9267 
    9268 > volume erase #9.12 center 195,199.31,250.4 radius 6.696
    9269 
    9270 > volume erase #9.12 center 194.47,204.1,253.32 radius 6.696
    9271 
    9272 > volume erase #9.12 center 182.23,202.2,252.09 radius 6.696
    9273 
    9274 > volume erase #9.12 center 169.22,199.88,254.89 radius 6.696
    9275 
    9276 > volume erase #9.12 center 161.93,196.55,257.12 radius 6.696
    9277 
    9278 > volume erase #9.12 center 176.91,206.8,258.12 radius 6.696
    9279 
    9280 > volume erase #9.12 center 173.29,184.41,255.72 radius 2.79
    9281 
    9282 > volume erase #9.12 center 172.18,184.39,256.72 radius 2.79
    9283 
    9284 > volume erase #9.12 center 171.92,185.05,257.24 radius 2.79
    9285 
    9286 > volume erase #9.12 center 169.01,174.26,254.74 radius 2.79
    9287 
    9288 > volume erase #9.12 center 172.08,175.63,261.58 radius 1.488
    9289 
    9290 > volume erase #9.12 center 171.52,175.58,262.8 radius 1.488
    9291 
    9292 > volume erase #9.12 center 196.67,195.6,258.92 radius 1.488
    9293 
    9294 > volume erase #9.12 center 197.62,194.73,262.63 radius 1.488
    9295 
    9296 > volume erase #9.12 center 188.36,203.39,269.5 radius 1.488
    9297 
    9298 > volume erase #9.12 center 188.66,202.09,268.26 radius 1.488
    9299 
    9300 > volume erase #9.12 center 192.04,201.52,269.55 radius 1.488
    9301 
    9302 > volume erase #9.12 center 192.04,201.52,269.55 radius 2.232
    9303 
    9304 > volume erase #9.12 center 194.45,203.49,268.33 radius 2.232
    9305 
    9306 > volume erase #9.12 center 197.18,202.52,267.91 radius 2.232
    9307 
    9308 > volume erase #9.12 center 191.54,203.42,267.86 radius 2.232
    9309 
    9310 > volume erase #9.12 center 207.73,193.75,268.03 radius 2.232
    9311 
    9312 > volume erase #9.12 center 207.6,191.7,266.66 radius 2.232
    9313 
    9314 > volume erase #9.12 center 205.54,195.6,268.01 radius 2.232
    9315 
    9316 > volume erase #9.12 center 209.14,193.95,265.53 radius 2.232
    9317 
    9318 > volume erase #9.12 center 196.62,194.57,264.82 radius 2.232
    9319 
    9320 > volume erase #9.12 center 196.85,191.74,263.62 radius 2.232
    9321 
    9322 > volume erase #9.12 center 186.31,196.72,263.71 radius 2.232
    9323 
    9324 > volume erase #9.12 center 185.88,198.13,264.72 radius 2.232
    9325 
    9326 > volume erase #9.12 center 184.84,195.57,265.65 radius 2.232
    9327 
    9328 > volume erase #9.12 center 172.16,183.66,264.03 radius 2.232
    9329 
    9330 > volume erase #9.12 center 171.76,182.85,263.81 radius 2.232
    9331 
    9332 > volume erase #9.12 center 170.72,184.39,264.98 radius 2.232
    9333 
    9334 > volume erase #9.12 center 171.49,182.88,266.59 radius 2.232
    9335 
    9336 > volume erase #9.12 center 179.15,166.74,261.29 radius 2.232
    9337 
    9338 > volume erase #9.12 center 178.87,164.06,263.52 radius 2.232
    9339 
    9340 > volume erase #9.12 center 198.17,157.98,262.84 radius 2.232
    9341 
    9342 > volume erase #9.12 center 196.37,157.87,264.09 radius 2.232
    9343 
    9344 > volume erase #9.12 center 194.34,158.92,264.5 radius 2.232
    9345 
    9346 > volume erase #9.12 center 195.72,158.08,263.56 radius 2.232
    9347 
    9348 > volume erase #9.12 center 201.58,168.23,265.11 radius 2.232
    9349 
    9350 > volume erase #9.12 center 204.06,178.3,265.26 radius 2.232
    9351 
    9352 > volume erase #9.12 center 207.2,171.8,253.33 radius 2.232
    9353 
    9354 > volume erase #9.12 center 182.09,156.89,255.37 radius 2.232
    9355 
    9356 > volume erase #9.12 center 179.67,158.49,264.13 radius 2.79
    9357 
    9358 > volume erase #9.12 center 199.48,167.75,261.41 radius 1.302
    9359 
    9360 > volume erase #9.12 center 199.29,166.63,262.29 radius 1.302
    9361 
    9362 > volume erase #9.12 center 197.13,168.94,260.81 radius 1.302
    9363 
    9364 > volume erase #9.12 center 196.97,168.35,255.11 radius 1.302
    9365 
    9366 > volume erase #9.12 center 189.83,160.27,254.03 radius 1.302
    9367 
    9368 > volume erase #9.12 center 176.49,163.63,254.58 radius 1.302
    9369 
    9370 > volume erase #9.12 center 173.91,163.42,253.82 radius 1.302
    9371 
    9372 > volume erase #9.12 center 188.4,164.13,260.27 radius 1.302
    9373 
    9374 > volume erase #9.12 center 188.45,164.32,260.22 radius 1.302
    9375 
    9376 > volume erase #9.12 center 187.98,163.39,260.8 radius 1.302
    9377 
    9378 > volume erase #9.12 center 187.93,163.16,262.27 radius 1.302
    9379 
    9380 > volume erase #9.12 center 203.58,186.48,261.77 radius 1.302
    9381 
    9382 > volume erase #9.12 center 188.6,202.12,258.59 radius 1.302
    9383 
    9384 > volume erase #9.12 center 188.13,201.53,258.4 radius 1.302
    9385 
    9386 > volume erase #9.12 center 187.85,202.17,258.04 radius 1.302
    9387 
    9388 > volume erase #9.12 center 196.63,197.98,266.59 radius 1.302
    9389 
    9390 > volume erase #9.12 center 195,201.99,265.96 radius 1.302
    9391 
    9392 > volume erase #9.12 center 195.26,201.96,266.98 radius 2.046
    9393 
    9394 > volume erase #9.12 center 194.1,202.28,266.88 radius 2.046
    9395 
    9396 > volume erase #9.12 center 195.01,201.77,266.73 radius 2.046
    9397 
    9398 > volume erase #9.12 center 169.05,194.15,266.61 radius 2.046
    9399 
    9400 > volume erase #9.12 center 164.62,180.47,265.09 radius 2.046
    9401 
    9402 > volume erase #9.12 center 168.71,180.39,267.54 radius 2.046
    9403 
    9404 > volume erase #9.12 center 169.25,189.34,267.22 radius 2.046
    9405 
    9406 > volume erase #9.12 center 171.83,193.4,267.25 radius 2.046
    9407 
    9408 > volume erase #9.12 center 174.32,199.59,267.49 radius 2.046
    9409 
    9410 > volume erase #9.12 center 204.58,185.48,263.24 radius 2.046
    9411 
    9412 > volume erase #9.12 center 209.04,174.47,254.29 radius 2.046
    9413 
    9414 > volume erase #9.12 center 208.15,174.41,256.03 radius 2.046
    9415 
    9416 > volume erase #9.12 center 209.2,172.04,254.9 radius 2.046
    9417 
    9418 > volume erase #9.12 center 203.32,171.82,253.03 radius 2.046
    9419 
    9420 > volume erase #9.12 center 197.09,167.61,261.64 radius 2.046
    9421 
    9422 > volume erase #9.12 center 190.05,165.29,260.95 radius 2.046
    9423 
    9424 > volume erase #9.12 center 166.94,175.41,255.61 radius 2.046
    9425 
    9426 > volume erase #9.12 center 164.43,178.66,257.44 radius 2.046
    9427 
    9428 > volume erase #9.12 center 165.27,178.75,256.96 radius 2.046
    9429 
    9430 > volume erase #9.12 center 167.95,178.15,254.46 radius 2.046
    9431 
    9432 > volume erase #9.12 center 168.71,191.92,257.08 radius 2.046
    9433 
    9434 > volume erase #9.12 center 171.92,192.05,255.22 radius 2.046
    9435 
    9436 > volume erase #9.12 center 167.56,193.6,258.06 radius 2.046
    9437 
    9438 > volume erase #9.12 center 168.48,192.7,259.22 radius 2.046
    9439 
    9440 > volume erase #9.12 center 167.16,189.2,259.01 radius 2.046
    9441 
    9442 > volume erase #9.12 center 177.73,189.97,265.54 radius 2.046
    9443 
    9444 > volume erase #9.12 center 164.83,176.17,256.01 radius 2.046
    9445 
    9446 > volume erase #9.12 center 187.19,159.39,253.32 radius 2.046
    9447 
    9448 > volume erase #9.12 center 187.76,160.93,254.39 radius 2.046
    9449 
    9450 > volume erase #9.12 center 200.75,161.43,255.11 radius 2.046
    9451 
    9452 > volume erase #9.12 center 199.8,173.83,256.52 radius 2.046
    9453 
    9454 > volume erase #9.12 center 199.88,169.15,256.4 radius 2.046
    9455 
    9456 > volume erase #9.12 center 177.57,193.36,263.08 radius 2.046
    9457 
    9458 > volume erase #9.12 center 177.52,194.14,264.2 radius 2.046
    9459 
    9460 > volume erase #9.12 center 176.39,198.61,270.06 radius 2.046
    9461 
    9462 > volume erase #9.12 center 177.48,199.24,269.15 radius 2.046
    9463 
    9464 > volume erase #9.12 center 180.56,198.81,269.71 radius 2.046
    9465 
    9466 > volume erase #9.12 center 181.64,201.92,267.75 radius 2.046
    9467 
    9468 > volume erase #9.12 center 178.32,201.57,267.94 radius 2.046
    9469 
    9470 > volume erase #9.12 center 179.92,199.74,268.99 radius 2.046
    9471 
    9472 > volume erase #9.12 center 177.91,198.42,268.97 radius 2.046
    9473 
    9474 > volume erase #9.12 center 182.72,200.9,268.03 radius 2.046
    9475 
    9476 > volume erase #9.12 center 168.77,192.56,267.85 radius 2.046
    9477 
    9478 > volume erase #9.12 center 169.88,167,266.26 radius 2.046
    9479 
    9480 > volume erase #9.12 center 168.87,166.02,263.63 radius 2.046
    9481 
    9482 > volume erase #9.12 center 174.56,164.55,254.84 radius 2.046
    9483 
    9484 > volume erase #9.12 center 170.27,169.04,253.83 radius 2.046
    9485 
    9486 > volume erase #9.12 center 171.39,171.99,254.18 radius 2.046
    9487 
    9488 > volume erase #9.12 center 169.11,170.84,254.99 radius 2.046
    9489 
    9490 > volume erase #9.12 center 198.75,191.53,258.17 radius 2.046
    9491 
    9492 > volume erase #9.12 center 200.35,189.69,258.05 radius 2.046
    9493 
    9494 > volume erase #9.12 center 175.1,200.1,259.4 radius 2.046
    9495 
    9496 > volume erase #9.12 center 169.59,167,255.02 radius 2.046
    9497 
    9498 > volume erase #9.12 center 172.21,166.28,254.44 radius 2.046
    9499 
    9500 > volume erase #9.12 center 173.12,169.18,253.77 radius 2.046
    9501 
    9502 > volume erase #9.12 center 175.59,165.3,256.26 radius 1.116
    9503 
    9504 > volume erase #9.12 center 210.55,180.34,264.99 radius 1.116
    9505 
    9506 > volume erase #9.12 center 209.31,182.15,266.22 radius 1.116
    9507 
    9508 > volume erase #9.12 center 174.21,188.44,257.58 radius 1.116
    9509 
    9510 > volume erase #9.12 center 175.04,189.6,257.47 radius 1.116
    9511 
    9512 > volume erase #9.12 center 174.68,188.31,258.97 radius 1.116
    9513 
    9514 > volume erase #9.12 center 182.49,194.98,257.93 radius 1.302
    9515 
    9516 > volume erase #9.12 center 180.89,194.59,257.99 radius 1.302
    9517 
    9518 > volume erase #9.12 center 172.82,189.41,255.87 radius 1.302
    9519 
    9520 > volume erase #9.12 center 179.86,200.18,258.51 radius 1.302
    9521 
    9522 > volume erase #9.12 center 203.52,198.12,258.69 radius 2.604
    9523 
    9524 > volume erase #9.12 center 205.7,196.86,257.2 radius 2.604
    9525 
    9526 > volume erase #9.12 center 199.73,199.1,257.84 radius 2.604
    9527 
    9528 > volume erase #9.12 center 202.23,196.65,254.86 radius 2.604
    9529 
    9530 > volume erase #9.12 center 214.39,181.65,261.94 radius 2.604
    9531 
    9532 > volume erase #9.12 center 201.63,169.64,266.87 radius 2.604
    9533 
    9534 > volume erase #9.12 center 203.44,176.56,264.28 radius 2.604
    9535 
    9536 > volume erase #9.12 center 199.65,173.13,256.57 radius 2.604
    9537 
    9538 > volume erase #9.12 center 207.41,195.15,266.81 radius 2.604
    9539 
    9540 > volume erase #9.12 center 197.6,194.56,263.23 radius 2.046
    9541 
    9542 > volume erase #9.12 center 196.63,192.06,264.06 radius 2.046
    9543 
    9544 > volume erase #9.12 center 208.53,168.55,255.65 radius 2.046
    9545 
    9546 > volume erase #9.12 center 199.24,167.43,264.15 radius 2.046
    9547 
    9548 > volume erase #9.12 center 202.29,179.83,262.7 radius 2.046
    9549 
    9550 > volume erase #9.12 center 202.59,180.06,265.14 radius 2.046
    9551 
    9552 > volume erase #9.12 center 204.66,164.48,264.21 radius 2.046
    9553 
    9554 > volume erase #9.12 center 207.54,188.07,257.39 radius 2.046
    9555 
    9556 > volume erase #9.12 center 190.2,164.16,264.62 radius 2.046
    9557 
    9558 > volume erase #9.12 center 190.78,162.66,264.21 radius 2.046
    9559 
    9560 > volume erase #9.12 center 191.04,164.57,264.48 radius 2.046
    9561 
    9562 > volume erase #9.12 center 191.74,162.88,264.01 radius 2.046
    9563 
    9564 > volume erase #9.12 center 169.31,168.78,265.58 radius 2.046
    9565 
    9566 > volume erase #9.12 center 178.43,165.86,264.01 radius 2.046
    9567 
    9568 > volume erase #9.12 center 168.09,175.4,256.5 radius 2.046
    9569 
    9570 > volume erase #9.12 center 187.52,197.18,263.46 radius 2.046
    9571 
    9572 > volume erase #9.12 center 195.2,196.96,266.89 radius 2.046
    9573 
    9574 > volume erase #9.12 center 173.38,180.8,256.98 radius 2.046
    9575 
    9576 > volume erase #9.12 center 173.04,177,262.32 radius 2.046
    9577 
    9578 > volume erase #9.12 center 202.13,183.82,257.15 radius 2.046
    9579 
    9580 > volume erase #9.12 center 202.59,183.01,257.41 radius 2.046
    9581 
    9582 > volume erase #9.12 center 201.81,183.26,259.26 radius 2.046
    9583 
    9584 > volume erase #9.12 center 202.47,188.32,266.44 radius 2.046
    9585 
    9586 > volume erase #9.12 center 202.54,188.53,264.11 radius 2.046
    9587 
    9588 > volume erase #9.12 center 199.27,197.29,257.92 radius 2.046
    9589 
    9590 > volume erase #9.12 center 199.08,196.93,257.18 radius 2.046
    9591 
    9592 > volume erase #9.12 center 198.56,194.64,257.17 radius 2.046
    9593 
    9594 > volume erase #9.12 center 200.41,197.94,258.49 radius 2.046
    9595 
    9596 > volume erase #9.12 center 200.78,197.63,257.26 radius 2.046
    9597 
    9598 > volume erase #9.12 center 171.11,186.58,262.63 radius 1.302
    9599 
    9600 > volume erase #9.12 center 172.53,186.62,263.26 radius 1.302
    9601 
    9602 > volume erase #9.12 center 167.28,181.59,265.98 radius 1.302
    9603 
    9604 > volume erase #9.12 center 204.71,190.74,266.51 radius 1.302
    9605 
    9606 > volume erase #9.12 center 205.21,192.8,266.78 radius 1.302
    9607 
    9608 > volume erase #9.12 center 175.11,193.67,265.78 radius 1.302
    9609 
    9610 > volume erase #9.12 center 174.65,191.1,268.05 radius 1.302
    9611 
    9612 > volume erase #9.12 center 194.48,167.68,256 radius 1.302
    9613 
    9614 > volume erase #9.12 center 194.93,165.18,252.98 radius 1.302
    9615 
    9616 > volume erase #9.12 center 199.68,169.25,258.87 radius 1.302
    9617 
    9618 > volume erase #9.12 center 199.8,168.54,259.04 radius 1.302
    9619 
    9620 > volume erase #9.12 center 182.85,198.53,265.9 radius 1.302
    9621 
    9622 > volume erase #9.12 center 184.13,197.25,266.1 radius 1.302
    9623 
    9624 > volume erase #9.12 center 183.16,197.67,265.33 radius 1.302
    9625 
    9626 > volume erase #9.12 center 178.4,168.3,263.12 radius 1.302
    9627 
    9628 > volume erase #9.12 center 177.59,167.43,260.27 radius 1.302
    9629 
    9630 > view
    9631 
    9632 [Repeated 1 time(s)]
    9633 
    9634 > save /Users/wujingyi/Desktop/figure/figure4/state1_Fo侧视atom+map.cxs
    9635 > includeMaps true
    9636 
    9637 ——— End of log from Tue Mar 18 21:19:53 2025 ———
    9638 
    9639 opened ChimeraX session 
    9640 
    9641 > ui tool show "Model Panel"
    9642 
    9643 > hide #!9 models
    9644 
    9645 > select add #11.27
    9646 
    9647 1542 atoms, 278 residues, 1 model selected 
    9648 
    9649 > select add #11.21
    9650 
    9651 3130 atoms, 543 residues, 2 models selected 
    9652 Alignment identifier is 11/T 
    9653 Alignment identifier is 11/Z 
    9654 
    9655 > select #11/T:1
    9656 
    9657 5 atoms, 4 bonds, 1 residue, 1 model selected 
    9658 
    9659 > select #11/T:1-108
    9660 
    9661 536 atoms, 535 bonds, 1 pseudobond, 99 residues, 2 models selected 
    9662 
    9663 > hide sel cartoons
    9664 
    9665 > select #11/T:135-136
    9666 
    9667 10 atoms, 9 bonds, 2 residues, 1 model selected 
    9668 
    9669 > select #11/T:135-240
    9670 
    9671 323 atoms, 321 bonds, 1 pseudobond, 65 residues, 2 models selected 
    9672 
    9673 > hide sel cartoons
    9674 
    9675 [Repeated 1 time(s)]
    9676 
    9677 > select subtract #11.21
    9678 
    9679 1 model selected 
    9680 
    9681 > select add #11.21
    9682 
    9683 1588 atoms, 265 residues, 1 model selected 
    9684 
    9685 > select subtract #11.21
    9686 
    9687 1 model selected 
    9688 
    9689 > hide #!11 models
    9690 
    9691 > show #!11 models
    9692 
    9693 > select add #1.27
    9694 
    9695 1542 atoms, 278 residues, 1 model selected 
    9696 
    9697 > select add #1.21
    9698 
    9699 3130 atoms, 543 residues, 2 models selected 
    9700 Alignment identifier is 1/T 
    9701 Alignment identifier is 1/Z 
    9702 
    9703 > select #1/T:1
    9704 
    9705 5 atoms, 4 bonds, 1 residue, 1 model selected 
    9706 
    9707 > select #1/T:1-88
    9708 
    9709 436 atoms, 435 bonds, 1 pseudobond, 79 residues, 2 models selected 
    9710 
    9711 > hide sel cartoons
    9712 
    9713 > select #1/Z:1
    9714 
    9715 5 atoms, 4 bonds, 1 residue, 1 model selected 
    9716 
    9717 > select #1/Z:1-88
    9718 
    9719 431 atoms, 430 bonds, 88 residues, 1 model selected 
    9720 
    9721 > hide sel cartoons
    9722 
    9723 > select #1/T:89
    9724 
    9725 5 atoms, 4 bonds, 1 residue, 1 model selected 
    9726 
    9727 > select #1/T:89-107
    9728 
    9729 95 atoms, 94 bonds, 19 residues, 1 model selected 
    9730 
    9731 > select #1/T:29-109
    9732 
    9733 404 atoms, 403 bonds, 1 pseudobond, 72 residues, 2 models selected 
    9734 
    9735 > select #1/T:29-113
    9736 
    9737 424 atoms, 423 bonds, 1 pseudobond, 76 residues, 2 models selected 
    9738 
    9739 > select #1/T:29-110
    9740 
    9741 409 atoms, 408 bonds, 1 pseudobond, 73 residues, 2 models selected 
    9742 
    9743 > select #1/T:110
    9744 
    9745 5 atoms, 4 bonds, 1 residue, 1 model selected 
    9746 
    9747 > select #1/T:110-239
    9748 
    9749 499 atoms, 504 bonds, 1 pseudobond, 89 residues, 2 models selected 
    9750 
    9751 > hide sel cartoons
    9752 
    9753 > select add #1.27
    9754 
    9755 2041 atoms, 504 bonds, 1 pseudobond, 367 residues, 3 models selected 
    9756 
    9757 > select subtract #1.21
    9758 
    9759 1542 atoms, 278 residues, 3 models selected 
    9760 
    9761 > hide sel cartoons
    9762 
    9763 > ui mousemode right select
    9764 
    9765 > select clear
    9766 
    9767 > save /Users/wujingyi/Desktop/figure/figure4/state1_Fo俯视atom+mapT细节1.png
    9768 > width 1660 height 1243 supersample 3 transparentBackground true
    9769 
    9770 > select add #1.27
    9771 
    9772 1542 atoms, 278 residues, 1 model selected 
    9773 
    9774 > show sel cartoons
    9775 
    9776 > select #1/Z:1
    9777 
    9778 5 atoms, 4 bonds, 1 residue, 1 model selected 
    9779 
    9780 > select #1/Z:1
    9781 
    9782 5 atoms, 4 bonds, 1 residue, 1 model selected 
    9783 
    9784 > select #1/Z:1-58
    9785 
    9786 284 atoms, 283 bonds, 58 residues, 1 model selected 
    9787 
    9788 > hide sel cartoons
    9789 
    9790 > select #1/Z:79
    9791 
    9792 5 atoms, 4 bonds, 1 residue, 1 model selected 
    9793 
    9794 > select #1/Z:79-238
    9795 
    9796 604 atoms, 602 bonds, 1 pseudobond, 123 residues, 2 models selected 
    9797 
    9798 > hide sel cartoons
    9799 
    9800 > select #1/Z:59
    9801 
    9802 5 atoms, 4 bonds, 1 residue, 1 model selected 
    9803 
    9804 > select #1/Z:59-88
    9805 
    9806 147 atoms, 146 bonds, 30 residues, 1 model selected 
    9807 
    9808 > hide sel cartoons
    9809 
    9810 > select #1/Z:89-90
    9811 
    9812 10 atoms, 9 bonds, 2 residues, 1 model selected 
    9813 
    9814 > select #1/Z:89-111
    9815 
    9816 115 atoms, 114 bonds, 23 residues, 1 model selected 
    9817 
    9818 > show sel cartoons
    9819 
    9820 > select clear
    9821 
    9822 > select #1/Z:259
    9823 
    9824 11 atoms, 10 bonds, 1 residue, 1 model selected 
    9825 
    9826 > select #1/Z:257
    9827 
    9828 5 atoms, 4 bonds, 1 residue, 1 model selected 
    9829 
    9830 > select #1/Z:259
    9831 
    9832 11 atoms, 10 bonds, 1 residue, 1 model selected 
    9833 
    9834 > select add #11.27
    9835 
    9836 1553 atoms, 10 bonds, 279 residues, 3 models selected 
    9837 
    9838 > hide sel atoms
    9839 
    9840 > select subtract #11.27
    9841 
    9842 11 atoms, 10 bonds, 1 residue, 3 models selected 
    9843 
    9844 > select #1/Z:259
    9845 
    9846 11 atoms, 10 bonds, 1 residue, 1 model selected 
    9847 
    9848 > select #1/Z:259
    9849 
    9850 11 atoms, 10 bonds, 1 residue, 1 model selected 
    9851 
    9852 > show sel atoms
    9853 
    9854 > select clear
    9855 
    9856 > save /Users/wujingyi/Desktop/figure/figure4/state1_Fo俯视atom+mapZ细节1.png
    9857 > width 1660 height 1243 supersample 3 transparentBackground true
    9858 
    9859 [Repeated 1 time(s)]
    9860 
    9861 > ui tool show Distances
    9862 
    9863 > select #11/J:59
    9864 
    9865 9 atoms, 8 bonds, 1 residue, 1 model selected 
    9866 
    9867 > hide sel cartoons
    9868 
    9869 > select #11/I:59
    9870 
    9871 9 atoms, 8 bonds, 1 residue, 1 model selected 
    9872 
    9873 > hide sel cartoons
    9874 
    9875 > select clear
    9876 
    9877 > select #11/J:59@CA
    9878 
    9879 1 atom, 1 residue, 1 model selected 
    9880 
    9881 > select add #11/I:59@CA
    9882 
    9883 2 atoms, 2 residues, 2 models selected 
    9884 
    9885 > distance #11/J:59@CA #11/I:59@CA
    9886 
    9887 Distance between J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #11/J GLU 59 CA
    9888 and /I GLU 59 CA: 12.159Å 
    9889 
    9890 > save /Users/wujingyi/Desktop/figure/figure4/state1_Fo俯视atom+mapZ细节1.cxs
    9891 
    9892 > show #!2 models
    9893 
    9894 > hide #!2 models
    9895 
    9896 > show #!2 models
    9897 
    9898 > hide #!2 models
    9899 
    9900 > show #!2 models
    9901 
    9902 > hide #!2 models
    9903 
    9904 > show #!5 models
    9905 
    9906 > show #!6 models
    9907 
    9908 > select add #5
    9909 
    9910 7093 atoms, 5298 bonds, 7093 residues, 4 models selected 
    9911 
    9912 > select subtract #5
    9913 
    9914 2 atoms, 2 residues, 7 models selected 
    9915 
    9916 > select add #5
    9917 
    9918 7093 atoms, 5298 bonds, 7093 residues, 4 models selected 
    9919 
    9920 > color (#!5,11 & sel) #ffa07aff
    9921 
    9922 [Repeated 1 time(s)]
    9923 
    9924 > color (#!5,11 & sel) #ffa07af8
    9925 
    9926 > color (#!5,11 & sel) #ffa07af6
    9927 
    9928 > color (#!5,11 & sel) #ffa07adf
    9929 
    9930 > color (#!5,11 & sel) #ffa07ad2
    9931 
    9932 > color (#!5,11 & sel) #ffa07ab5
    9933 
    9934 > color (#!5,11 & sel) #ffa07aa5
    9935 
    9936 > color (#!5,11 & sel) #ffa07a8b
    9937 
    9938 > color (#!5,11 & sel) #ffa07a84
    9939 
    9940 > color (#!5,11 & sel) #ffa07a7e
    9941 
    9942 [Repeated 3 time(s)]
    9943 
    9944 > color (#!5,11 & sel) #ffa07a80
    9945 
    9946 [Repeated 1 time(s)]
    9947 
    9948 > color (#!5,11 & sel) #ff9f7a80
    9949 
    9950 > color (#!5,11 & sel) #ff9d7a80
    9951 
    9952 > color (#!5,11 & sel) #ff9c7a80
    9953 
    9954 [Repeated 1 time(s)]
    9955 
    9956 > color (#!5,11 & sel) #ff9b7a80
    9957 
    9958 > color (#!5,11 & sel) #ff9a7a80
    9959 
    9960 > color (#!5,11 & sel) #ff9b7a80
    9961 
    9962 > color (#!5,11 & sel) #ff9c7a80
    9963 
    9964 > color (#!5,11 & sel) #ff9d7a80
    9965 
    9966 > color (#!5,11 & sel) #ff9e7a80
    9967 
    9968 [Repeated 1 time(s)]
    9969 
    9970 > color (#!5,11 & sel) #f5bc9780
    9971 
    9972 > color (#!5,11 & sel) #f5bc9680
    9973 
    9974 > color (#!5,11 & sel) #f5bb9680
    9975 
    9976 > color (#!5,11 & sel) #f5b89380
    9977 
    9978 > color (#!5,11 & sel) #f5b59280
    9979 
    9980 > color (#!5,11 & sel) #f5b39180
    9981 
    9982 > color (#!5,11 & sel) #f5b29080
    9983 
    9984 > color (#!5,11 & sel) #f5b19080
    9985 
    9986 > color (#!5,11 & sel) #f5a78c80
    9987 
    9988 > color (#!5,11 & sel) #f5a48c80
    9989 
    9990 > color (#!5,11 & sel) #f5a38c80
    9991 
    9992 > color (#!5,11 & sel) #f59e8f80
    9993 
    9994 > color (#!5,11 & sel) #f5999180
    9995 
    9996 > color (#!5,11 & sel) #f5999280
    9997 
    9998 [Repeated 1 time(s)]
    9999 
    10000 > color (#!5,11 & sel) #f59b9280
    10001 
    10002 > color (#!5,11 & sel) #f59f9180
    10003 
    10004 > color (#!5,11 & sel) #f5a28f80
    10005 
    10006 > color (#!5,11 & sel) #f5a58c80
    10007 
    10008 [Repeated 2 time(s)]
    10009 
    10010 > color (#!5,11 & sel) #f5a98980
    10011 
    10012 > color (#!5,11 & sel) #f5af8680
    10013 
    10014 > color (#!5,11 & sel) #f5b08480
    10015 
    10016 [Repeated 1 time(s)]
    10017 
    10018 > color (#!5,11 & sel) #f5b28580
    10019 
    10020 [Repeated 1 time(s)]
    10021 
    10022 > color (#!5,11 & sel) #f5b58680
    10023 
    10024 > color (#!5,11 & sel) #f5bc8880
    10025 
    10026 > color (#!5,11 & sel) #f5c08880
    10027 
    10028 [Repeated 1 time(s)]
    10029 
    10030 > color (#!5,11 & sel) #f5b77780
    10031 
    10032 > color (#!5,11 & sel) #f5af6680
    10033 
    10034 [Repeated 2 time(s)]
    10035 
    10036 > color (#!5,11 & sel) #f5b46680
    10037 
    10038 > color (#!5,11 & sel) #f5bb6480
    10039 
    10040 > color (#!5,11 & sel) #f5be6380
    10041 
    10042 [Repeated 1 time(s)]
    10043 
    10044 > color (#!5,11 & sel) #f5bf6380
    10045 
    10046 > color (#!5,11 & sel) #f5b95580
    10047 
    10048 > color (#!5,11 & sel) #f5b74d80
    10049 
    10050 > color (#!5,11 & sel) #f5b74c80
    10051 
    10052 > color (#!5,11 & sel) #f5b74d80
    10053 
    10054 > color (#!5,11 & sel) #f5b84e80
    10055 
    10056 > color (#!5,11 & sel) #f5bc4f80
    10057 
    10058 > color (#!5,11 & sel) #f5c24f80
    10059 
    10060 > color (#!5,11 & sel) #f5c34e80
    10061 
    10062 > select subtract #5
    10063 
    10064 2 atoms, 2 residues, 7 models selected 
    10065 
    10066 > select add #5
    10067 
    10068 7093 atoms, 5298 bonds, 7093 residues, 4 models selected 
    10069 
    10070 > select subtract #5
    10071 
    10072 2 atoms, 2 residues, 7 models selected 
    10073 
    10074 > color #5 #f1b56380
    10075 
    10076 > color #5 #f1ab4d80
    10077 
    10078 > color #5 #f1bf5380
    10079 
    10080 > color #5 #f1bb6480
    10081 
    10082 > color #5 #f1c14b80
    10083 
    10084 > color #5 #f1c94480
    10085 
    10086 > color #5 #f1bf4180
    10087 
    10088 > color #5 #e9b93f80
    10089 
    10090 > color #6 #ff40ffff
    10091 
    10092 > color #6 #00fdffff
    10093 
    10094 > color #6 #00fdff88
    10095 
    10096 [Repeated 1 time(s)]
    10097 
    10098 > color #6 #00fdff87
    10099 
    10100 > color #6 #00fdff80
    10101 
    10102 > color #6 #00fdff60
    10103 
    10104 > color #6 #64dade60
    10105 
    10106 > color #6 #62d6da60
    10107 
    10108 > color #6 #64bada60
    10109 
    10110 > color #6 #72dad960
    10111 
    10112 > color #6 #71d4da60
    10113 
    10114 > color #6 #6cc7da60
    10115 
    10116 > color #6 #66bccd60
    10117 
    10118 > color #6 #6aafcd60
    10119 
    10120 > color #6 #639ecd60
    10121 
    10122 > color #6 #63a1cd60
    10123 
    10124 > color #6 #3aaccd60
    10125 
    10126 > color #6 #39cdc060
    10127 
    10128 > color #6 #59cdc060
    10129 
    10130 > color #6 #56c0cd60
    10131 
    10132 > color #6 #50b3bf60
    10133 
    10134 > select add #1.21
    10135 
    10136 1590 atoms, 267 residues, 4 models selected 
    10137 
    10138 > hide sel cartoons
    10139 
    10140 > hide sel atoms
    10141 
    10142 > show sel atoms
    10143 
    10144 > hide sel atoms
    10145 
    10146 > undo
    10147 
    10148 [Repeated 2 time(s)]
    10149 
    10150 > select clear
    10151 
    10152 Drag select of 11 atoms, 10 bonds 
    10153 
    10154 > hide sel atoms
    10155 
    10156 > select #11/J:58
    10157 
    10158 7 atoms, 6 bonds, 1 residue, 1 model selected 
    10159 
    10160 > hide sel cartoons
    10161 
    10162 > select clear
    10163 
    10164 > select #11/J:61
    10165 
    10166 8 atoms, 7 bonds, 1 residue, 1 model selected 
    10167 
    10168 > hide sel cartoons
    10169 
    10170 > select #11/J:60
    10171 
    10172 5 atoms, 4 bonds, 1 residue, 1 model selected 
    10173 
    10174 > hide sel cartoons
    10175 
    10176 > select #11/I:61
    10177 
    10178 8 atoms, 7 bonds, 1 residue, 1 model selected 
    10179 
    10180 > select add #11/I:60
    10181 
    10182 13 atoms, 11 bonds, 2 residues, 2 models selected 
    10183 
    10184 > select add #11/I:58
    10185 
    10186 20 atoms, 17 bonds, 3 residues, 2 models selected 
    10187 
    10188 > hide sel cartoons
    10189 
    10190 > select #11/H:58
    10191 
    10192 7 atoms, 6 bonds, 1 residue, 1 model selected 
    10193 
    10194 > select add #11/H:61
    10195 
    10196 15 atoms, 13 bonds, 2 residues, 2 models selected 
    10197 
    10198 > select add #11/H:60
    10199 
    10200 20 atoms, 17 bonds, 3 residues, 2 models selected 
    10201 
    10202 > select add #11/H:59
    10203 
    10204 29 atoms, 25 bonds, 4 residues, 2 models selected 
    10205 
    10206 > select subtract #11/H:59
    10207 
    10208 20 atoms, 17 bonds, 3 residues, 2 models selected 
    10209 
    10210 > hide sel cartoons
    10211 
    10212 > select #11/Q:59
    10213 
    10214 9 atoms, 8 bonds, 1 residue, 1 model selected 
    10215 
    10216 > select #11/Q:58
    10217 
    10218 7 atoms, 6 bonds, 1 residue, 1 model selected 
    10219 
    10220 > select add #11/Q:60
    10221 
    10222 12 atoms, 10 bonds, 2 residues, 2 models selected 
    10223 
    10224 > select add #11/Q:61
    10225 
    10226 20 atoms, 17 bonds, 3 residues, 2 models selected 
    10227 
    10228 > hide sel cartoons
    10229 
    10230 > show sel cartoons
    10231 
    10232 > select clear
    10233 
    10234 > show sel cartoons
    10235 
    10236 > select clear
    10237 
    10238 [Repeated 1 time(s)]
    10239 
    10240 > select #11/I:59
    10241 
    10242 9 atoms, 8 bonds, 1 residue, 1 model selected 
    10243 
    10244 > select add #11/J:59
    10245 
    10246 18 atoms, 16 bonds, 2 residues, 2 models selected 
    10247 
    10248 > color (#!11 & sel) #50b3bf61
    10249 
    10250 [Repeated 1 time(s)]
    10251 
    10252 > color (#!11 & sel) #f5ccdc61
    10253 
    10254 > color (#!11 & sel) #f5ccdc63
    10255 
    10256 > color (#!11 & sel) #f5ccdcf9
    10257 
    10258 > color (#!11 & sel) #f5ccdcff
    10259 
    10260 > select clear
    10261 
    10262 Drag select of 1 residues 
    10263 
    10264 > select add #11/I:59
    10265 
    10266 18 atoms, 8 bonds, 2 residues, 2 models selected 
    10267 
    10268 > select clear
    10269 
    10270 > ~distance #11/J:59@CA #11/I:59@CA
    10271 
    10272 > select clear
    10273 
    10274 > select #11/J:59
    10275 
    10276 9 atoms, 8 bonds, 1 residue, 1 model selected 
    10277 
    10278 > select add #11/I:59
    10279 
    10280 18 atoms, 16 bonds, 2 residues, 2 models selected 
    10281 
    10282 > color (#!11 & sel) byhetero
    10283 
    10284 > select clear
    10285 
    10286 Drag select of 24 atoms, 16 residues, 20 bonds 
    10287 
    10288 > hide sel cartoons
    10289 
    10290 > hide sel atoms
    10291 
    10292 Drag select of 9 atoms, 8 residues, 8 bonds 
    10293 
    10294 > hide sel atoms
    10295 
    10296 > hide sel cartoons
    10297 
    10298 > select #1/Z:111
    10299 
    10300 5 atoms, 4 bonds, 1 residue, 1 model selected 
    10301 Destroying pre-existing alignment with identifier 1/Z 
    10302 Alignment identifier is 1/Z 
    10303 
    10304 > select #1/Z:1
    10305 
    10306 5 atoms, 4 bonds, 1 residue, 1 model selected 
    10307 
    10308 > select #1/Z:1-238
    10309 
    10310 987 atoms, 985 bonds, 1 pseudobond, 201 residues, 2 models selected 
    10311 
    10312 > show sel cartoons
    10313 
    10314 > ui tool show "Side View"
    10315 
    10316 > select clear
    10317 
    10318 [Repeated 1 time(s)]
    10319 
    10320 > color #5 #f6b93f80
    10321 
    10322 > color #5 #f6a33f80
    10323 
    10324 > color #5 #f6a73f80
    10325 
    10326 > select #6/B:9615@O
    10327 
    10328 1 atom, 1 residue, 1 model selected 
    10329 
    10330 > select subtract #6.2
    10331 
    10332 1 model selected 
    10333 
    10334 > select add #6.2
    10335 
    10336 2066 atoms, 2066 residues, 1 model selected 
    10337 
    10338 > select subtract #6.2
    10339 
    10340 1 model selected 
    10341 
    10342 > color #6.3 #50b3bf73
    10343 
    10344 > select #1/Z:33
    10345 
    10346 5 atoms, 4 bonds, 1 residue, 1 model selected 
    10347 
    10348 > select #1/Z:32
    10349 
    10350 5 atoms, 4 bonds, 1 residue, 1 model selected 
    10351 
    10352 > select #1/Z:32-33
    10353 
    10354 10 atoms, 9 bonds, 2 residues, 1 model selected 
    10355 
    10356 > select #1/Z:31
    10357 
    10358 5 atoms, 4 bonds, 1 residue, 1 model selected 
    10359 
    10360 > select #1/Z:31-39
    10361 
    10362 45 atoms, 44 bonds, 9 residues, 1 model selected 
    10363 
    10364 > select #1/Z:23
    10365 
    10366 4 atoms, 3 bonds, 1 residue, 1 model selected 
    10367 
    10368 > select #1/Z:23-45
    10369 
    10370 112 atoms, 111 bonds, 23 residues, 1 model selected 
    10371 
    10372 > hide sel cartoons
    10373 
    10374 > select clear
    10375 
    10376 > select #1/Z:228
    10377 
    10378 5 atoms, 4 bonds, 1 residue, 1 model selected 
    10379 
    10380 > select #1/Z:228
    10381 
    10382 5 atoms, 4 bonds, 1 residue, 1 model selected 
    10383 
    10384 > select #6/A:291@O
    10385 
    10386 1 atom, 1 residue, 1 model selected 
    10387 
    10388 > select add #6.3
    10389 
    10390 386 atoms, 386 residues, 2 models selected 
    10391 
    10392 > select subtract #6.3
    10393 
    10394 1 atom, 1 residue, 3 models selected 
    10395 
    10396 > select add #6.2
    10397 
    10398 2067 atoms, 2067 residues, 2 models selected 
    10399 
    10400 > select subtract #6.2
    10401 
    10402 1 atom, 1 residue, 3 models selected 
    10403 
    10404 > select add #6.1
    10405 
    10406 3239 atoms, 3239 residues, 3 models selected 
    10407 
    10408 > select subtract #6.1
    10409 
    10410 1 model selected 
    10411 
    10412 > select #6/A:2100@O
    10413 
    10414 1 atom, 1 residue, 1 model selected 
    10415 
    10416 > select add #6.1.1
    10417 
    10418 1 atom, 1 residue, 3 models selected 
    10419 
    10420 > select subtract #6.1.1
    10421 
    10422 1 atom, 1 residue, 2 models selected 
    10423 Drag select of rfxa2_outlet_hollow.pdb_A SES surface, 8730 of 31532 triangles 
    10424 Drag select of rfxa2_outlet_hollow.pdb_A SES surface, 7934 of 31532 triangles 
    10425 
    10426 > select #6/A:279@O
    10427 
    10428 1 atom, 1 residue, 1 model selected 
    10429 Drag select of rfxa2_outlet_hollow.pdb_A SES surface, 2470 of 31532 triangles 
    10430 
    10431 > select #6/A:189@O
    10432 
    10433 1 atom, 1 residue, 1 model selected 
    10434 
    10435 > hide sel surfaces
    10436 
    10437 > select #6/A:279@O
    10438 
    10439 1 atom, 1 residue, 1 model selected 
    10440 
    10441 > hide sel surfaces
    10442 
    10443 > select #6/A:382@O
    10444 
    10445 1 atom, 1 residue, 1 model selected 
    10446 
    10447 > hide sel surfaces
    10448 
    10449 > select #6/A:286@O
    10450 
    10451 1 atom, 1 residue, 1 model selected 
    10452 Drag select of rfxa2_outlet_hollow.pdb_A SES surface, 2328 of 31532 triangles 
    10453 
    10454 > hide #!1,5-6,11 surfaces
    10455 
    10456 > show #!1,5-6,11 surfaces
    10457 
    10458 > hide #!1,5-6,11 surfaces
    10459 
    10460 > select add #6
    10461 
    10462 5690 atoms, 4616 bonds, 5690 residues, 3 models selected 
    10463 
    10464 > select subtract #6
    10465 
    10466 3 models selected 
    10467 
    10468 > select add #6.1
    10469 
    10470 3239 atoms, 3239 residues, 3 models selected 
    10471 
    10472 > select add #6.2
    10473 
    10474 5305 atoms, 5305 residues, 4 models selected 
    10475 
    10476 > select add #6.3
    10477 
    10478 5690 atoms, 5690 residues, 5 models selected 
    10479 
    10480 > show sel surfaces
    10481 
    10482 > select clear
    10483 
    10484 Drag select of rfxa2_outlet_hollow.pdb_A SES surface, 2577 of 31532 triangles 
    10485 
    10486 > select #6/A:279@O
    10487 
    10488 1 atom, 1 residue, 1 model selected 
    10489 
    10490 > hide sel surfaces
    10491 
    10492 > select #6/A:210@O
    10493 
    10494 1 atom, 1 residue, 1 model selected 
    10495 
    10496 > hide sel surfaces
    10497 
    10498 > select #6/A:189@O
    10499 
    10500 1 atom, 1 residue, 1 model selected 
    10501 
    10502 > hide sel cartoons
    10503 
    10504 > select add #6.3
    10505 
    10506 386 atoms, 386 residues, 2 models selected 
    10507 
    10508 > select add #6.1.1
    10509 
    10510 386 atoms, 386 residues, 4 models selected 
    10511 
    10512 > select subtract #6.3
    10513 
    10514 1 atom, 1 residue, 4 models selected 
    10515 
    10516 > select subtract #6.1.1
    10517 
    10518 1 atom, 1 residue, 2 models selected 
    10519 
    10520 > select add #6.1.1
    10521 
    10522 1 atom, 1 residue, 3 models selected 
    10523 
    10524 > select subtract #6.1.1
    10525 
    10526 1 atom, 1 residue, 2 models selected 
    10527 
    10528 > select add #6.1.1
    10529 
    10530 1 atom, 1 residue, 3 models selected 
    10531 
    10532 > hide sel surfaces
    10533 
    10534 > select subtract #6.1.1
    10535 
    10536 1 atom, 1 residue, 2 models selected 
    10537 
    10538 > select add #6.1.1
    10539 
    10540 1 atom, 1 residue, 3 models selected 
    10541 
    10542 > select #6/A:662@O
    10543 
    10544 1 atom, 1 residue, 1 model selected 
    10545 
    10546 > select add #6.2
    10547 
    10548 2067 atoms, 2067 residues, 2 models selected 
    10549 
    10550 > select subtract #6.2
    10551 
    10552 1 atom, 1 residue, 3 models selected 
    10553 
    10554 > select add #6.3
    10555 
    10556 386 atoms, 386 residues, 2 models selected 
    10557 
    10558 > select subtract #6.3
    10559 
    10560 1 atom, 1 residue, 3 models selected 
    10561 
    10562 > select #6/A:521@O
    10563 
    10564 1 atom, 1 residue, 1 model selected 
    10565 
    10566 > hide sel surfaces
    10567 
    10568 > select #6/A:191@O
    10569 
    10570 1 atom, 1 residue, 1 model selected 
    10571 
    10572 > hide sel surfaces
    10573 
    10574 Drag select of rfxa2_outlet_hollow.pdb_A SES surface, 1148 of 31532 triangles 
    10575 
    10576 > select #6/A:537@O
    10577 
    10578 1 atom, 1 residue, 1 model selected 
    10579 
    10580 > hide sel surfaces
    10581 
    10582 > select #6/A:286@O
    10583 
    10584 1 atom, 1 residue, 1 model selected 
    10585 
    10586 > hide sel surfaces
    10587 
    10588 > select #6/A:190@O
    10589 
    10590 1 atom, 1 residue, 1 model selected 
    10591 
    10592 > hide sel surfaces
    10593 
    10594 Drag select of rfxa2_outlet_hollow.pdb_A SES surface, 2809 of 31532 triangles 
    10595 
    10596 > select #6/A:417@O
    10597 
    10598 1 atom, 1 residue, 1 model selected 
    10599 
    10600 > hide sel surfaces
    10601 
    10602 > select #6/A:321@O
    10603 
    10604 1 atom, 1 residue, 1 model selected 
    10605 
    10606 > hide sel surfaces
    10607 
    10608 > select #6/A:382@O
    10609 
    10610 1 atom, 1 residue, 1 model selected 
    10611 
    10612 > hide sel surfaces
    10613 
    10614 > select #6/A:282@O
    10615 
    10616 1 atom, 1 residue, 1 model selected 
    10617 
    10618 > hide sel surfaces
    10619 
    10620 > select #6/A:193@O
    10621 
    10622 1 atom, 1 residue, 1 model selected 
    10623 
    10624 > hide sel surfaces
    10625 
    10626 > select #6/A:662@O
    10627 
    10628 1 atom, 1 residue, 1 model selected 
    10629 
    10630 > hide sel surfaces
    10631 
    10632 > select #6/A:280@O
    10633 
    10634 1 atom, 1 residue, 1 model selected 
    10635 
    10636 > hide sel surfaces
    10637 
    10638 > select #6/A:291@O
    10639 
    10640 1 atom, 1 residue, 1 model selected 
    10641 
    10642 > hide sel surfaces
    10643 
    10644 > select #6/A:241@O
    10645 
    10646 1 atom, 1 residue, 1 model selected 
    10647 
    10648 > select #6/A:295@O
    10649 
    10650 1 atom, 1 residue, 1 model selected 
    10651 
    10652 > hide sel surfaces
    10653 
    10654 > select #6/A:386@O
    10655 
    10656 1 atom, 1 residue, 1 model selected 
    10657 
    10658 > hide sel surfaces
    10659 
    10660 > select #6/A:202@O
    10661 
    10662 1 atom, 1 residue, 1 model selected 
    10663 
    10664 > hide sel surfaces
    10665 
    10666 > select #6/A:194@O
    10667 
    10668 1 atom, 1 residue, 1 model selected 
    10669 
    10670 > hide sel surfaces
    10671 
    10672 > select #6/A:199@O
    10673 
    10674 1 atom, 1 residue, 1 model selected 
    10675 
    10676 > hide sel surfaces
    10677 
    10678 > select #6/A:281@O
    10679 
    10680 1 atom, 1 residue, 1 model selected 
    10681 
    10682 > hide sel surfaces
    10683 
    10684 > select #6/A:664@O
    10685 
    10686 1 atom, 1 residue, 1 model selected 
    10687 
    10688 > hide sel surfaces
    10689 
    10690 > select #6/A:474@O
    10691 
    10692 1 atom, 1 residue, 1 model selected 
    10693 
    10694 > hide sel surfaces
    10695 
    10696 > select #6/A:424@O
    10697 
    10698 1 atom, 1 residue, 1 model selected 
    10699 
    10700 > hide sel surfaces
    10701 
    10702 > select #6/A:445@O
    10703 
    10704 1 atom, 1 residue, 1 model selected 
    10705 
    10706 > hide sel surfaces
    10707 
    10708 > select #6/A:555@O
    10709 
    10710 1 atom, 1 residue, 1 model selected 
    10711 
    10712 > hide sel surfaces
    10713 
    10714 > select #6/A:729@O
    10715 
    10716 1 atom, 1 residue, 1 model selected 
    10717 
    10718 > hide sel surfaces
    10719 
    10720 > select #6/A:547@O
    10721 
    10722 1 atom, 1 residue, 1 model selected 
    10723 
    10724 > hide sel surfaces
    10725 
    10726 > select #6/A:133@O
    10727 
    10728 1 atom, 1 residue, 1 model selected 
    10729 
    10730 > hide sel surfaces
    10731 
    10732 > select #6/A:131@O
    10733 
    10734 1 atom, 1 residue, 1 model selected 
    10735 
    10736 > hide sel surfaces
    10737 
    10738 > select #6/A:128@O
    10739 
    10740 1 atom, 1 residue, 1 model selected 
    10741 
    10742 > hide sel surfaces
    10743 
    10744 > select #6/A:206@O
    10745 
    10746 1 atom, 1 residue, 1 model selected 
    10747 
    10748 > hide sel surfaces
    10749 
    10750 > select #6/A:129@O
    10751 
    10752 1 atom, 1 residue, 1 model selected 
    10753 
    10754 > hide sel surfaces
    10755 
    10756 > select #6/A:659@O
    10757 
    10758 1 atom, 1 residue, 1 model selected 
    10759 
    10760 > hide sel surfaces
    10761 
    10762 > select #6/A:763@O
    10763 
    10764 1 atom, 1 residue, 1 model selected 
    10765 
    10766 > hide sel surfaces
    10767 
    10768 > select #6/A:737@O
    10769 
    10770 1 atom, 1 residue, 1 model selected 
    10771 
    10772 > hide sel surfaces
    10773 
    10774 [Repeated 1 time(s)]
    10775 
    10776 > select #6/A:508@O
    10777 
    10778 1 atom, 1 residue, 1 model selected 
    10779 
    10780 > hide sel cartoons
    10781 
    10782 > hide sel surfaces
    10783 
    10784 > select #6/A:516@O
    10785 
    10786 1 atom, 1 residue, 1 model selected 
    10787 
    10788 > hide sel surfaces
    10789 
    10790 > select #6/A:349@O
    10791 
    10792 1 atom, 1 residue, 1 model selected 
    10793 
    10794 > hide sel surfaces
    10795 
    10796 > select #6/A:139@O
    10797 
    10798 1 atom, 1 residue, 1 model selected 
    10799 
    10800 > hide sel surfaces
    10801 
    10802 > select #6/A:562@O
    10803 
    10804 1 atom, 1 residue, 1 model selected 
    10805 
    10806 > hide sel surfaces
    10807 
    10808 > select #6/A:648@O
    10809 
    10810 1 atom, 1 residue, 1 model selected 
    10811 
    10812 > hide sel surfaces
    10813 
    10814 > select clear
    10815 
    10816 > select #6/A:751@O
    10817 
    10818 1 atom, 1 residue, 1 model selected 
    10819 
    10820 > hide sel surfaces
    10821 
    10822 > select #6/A:633@O
    10823 
    10824 1 atom, 1 residue, 1 model selected 
    10825 
    10826 > hide sel surfaces
    10827 
    10828 > select #6/A:660@O
    10829 
    10830 1 atom, 1 residue, 1 model selected 
    10831 
    10832 > hide sel surfaces
    10833 
    10834 > select #6/A:513@O
    10835 
    10836 1 atom, 1 residue, 1 model selected 
    10837 
    10838 > hide sel surfaces
    10839 
    10840 > select #6/A:242@O
    10841 
    10842 1 atom, 1 residue, 1 model selected 
    10843 
    10844 > hide sel surfaces
    10845 
    10846 > select #6/A:365@O
    10847 
    10848 1 atom, 1 residue, 1 model selected 
    10849 
    10850 > hide sel surfaces
    10851 
    10852 > select #6/A:769@O
    10853 
    10854 1 atom, 1 residue, 1 model selected 
    10855 
    10856 > hide sel surfaces
    10857 
    10858 > select #6/A:352@O
    10859 
    10860 1 atom, 1 residue, 1 model selected 
    10861 
    10862 > hide sel surfaces
    10863 
    10864 > select clear
    10865 
    10866 Drag select of rfxa2_outlet_hollow.pdb_A SES surface, 30 of 31532 triangles 
    10867 
    10868 > select clear
    10869 
    10870 [Repeated 1 time(s)]
    10871 
    10872 > select #6/A:490@O
    10873 
    10874 1 atom, 1 residue, 1 model selected 
    10875 
    10876 > hide sel surfaces
    10877 
    10878 > select #6/A:241@O
    10879 
    10880 1 atom, 1 residue, 1 model selected 
    10881 
    10882 > hide sel surfaces
    10883 
    10884 > select #6/A:222@O
    10885 
    10886 1 atom, 1 residue, 1 model selected 
    10887 
    10888 > hide sel surfaces
    10889 
    10890 > select #6/A:427@O
    10891 
    10892 1 atom, 1 residue, 1 model selected 
    10893 
    10894 > hide sel surfaces
    10895 
    10896 > select #6/A:468@O
    10897 
    10898 1 atom, 1 residue, 1 model selected 
    10899 
    10900 > hide sel surfaces
    10901 
    10902 > select #6/A:609@O
    10903 
    10904 1 atom, 1 residue, 1 model selected 
    10905 
    10906 > hide sel surfaces
    10907 
    10908 > select #6/A:499@O
    10909 
    10910 1 atom, 1 residue, 1 model selected 
    10911 
    10912 > hide sel surfaces
    10913 
    10914 > select #6/A:224@O
    10915 
    10916 1 atom, 1 residue, 1 model selected 
    10917 
    10918 > hide sel surfaces
    10919 
    10920 > select clear
    10921 
    10922 > select #6/A:135@O
    10923 
    10924 1 atom, 1 residue, 1 model selected 
    10925 
    10926 > hide sel surfaces
    10927 
    10928 > select #6/A:339@O
    10929 
    10930 1 atom, 1 residue, 1 model selected 
    10931 
    10932 > hide sel surfaces
    10933 
    10934 > select #6/A:207@O
    10935 
    10936 1 atom, 1 residue, 1 model selected 
    10937 
    10938 > hide sel surfaces
    10939 
    10940 > select #6/A:203@O
    10941 
    10942 1 atom, 1 residue, 1 model selected 
    10943 
    10944 > hide sel surfaces
    10945 
    10946 > select #6/A:200@O
    10947 
    10948 1 atom, 1 residue, 1 model selected 
    10949 
    10950 > hide sel surfaces
    10951 
    10952 > select clear
    10953 
    10954 > select #6/A:196@O
    10955 
    10956 1 atom, 1 residue, 1 model selected 
    10957 
    10958 > hide sel surfaces
    10959 
    10960 > select #6/A:392@O
    10961 
    10962 1 atom, 1 residue, 1 model selected 
    10963 
    10964 > hide sel surfaces
    10965 
    10966 > select #6/A:209@O
    10967 
    10968 1 atom, 1 residue, 1 model selected 
    10969 
    10970 > hide sel surfaces
    10971 
    10972 > select #6/A:213@O
    10973 
    10974 1 atom, 1 residue, 1 model selected 
    10975 
    10976 > hide sel surfaces
    10977 
    10978 > select #6/A:520@O
    10979 
    10980 1 atom, 1 residue, 1 model selected 
    10981 
    10982 > hide sel surfaces
    10983 
    10984 > select #6/A:852@O
    10985 
    10986 1 atom, 1 residue, 1 model selected 
    10987 
    10988 > hide sel surfaces
    10989 
    10990 > select #6/A:519@O
    10991 
    10992 1 atom, 1 residue, 1 model selected 
    10993 
    10994 > hide sel surfaces
    10995 
    10996 Drag select of rfxa2_outlet_hollow.pdb_A SES surface, 49 of 31532 triangles 
    10997 
    10998 > select clear
    10999 
    11000 [Repeated 2 time(s)]
    11001 
    11002 > select #6/A:854@O
    11003 
    11004 1 atom, 1 residue, 1 model selected 
    11005 
    11006 > select #6/A:197@O
    11007 
    11008 1 atom, 1 residue, 1 model selected 
    11009 
    11010 > hide sel surfaces
    11011 
    11012 > select #6/A:931@O
    11013 
    11014 1 atom, 1 residue, 1 model selected 
    11015 
    11016 > hide sel surfaces
    11017 
    11018 > select #6/A:851@O
    11019 
    11020 1 atom, 1 residue, 1 model selected 
    11021 
    11022 > hide sel surfaces
    11023 
    11024 > select #6/A:932@O
    11025 
    11026 1 atom, 1 residue, 1 model selected 
    11027 
    11028 > hide sel surfaces
    11029 
    11030 > select #6/A:948@O
    11031 
    11032 1 atom, 1 residue, 1 model selected 
    11033 
    11034 > hide sel surfaces
    11035 
    11036 > select #6/A:958@O
    11037 
    11038 1 atom, 1 residue, 1 model selected 
    11039 
    11040 > hide sel surfaces
    11041 
    11042 > select clear
    11043 
    11044 > select #6/A:782@O
    11045 
    11046 1 atom, 1 residue, 1 model selected 
    11047 
    11048 > hide sel surfaces
    11049 
    11050 > select #6/A:680@O
    11051 
    11052 1 atom, 1 residue, 1 model selected 
    11053 
    11054 > hide sel surfaces
    11055 
    11056 > select #6/A:876@O
    11057 
    11058 1 atom, 1 residue, 1 model selected 
    11059 
    11060 > hide sel surfaces
    11061 
    11062 > select #6/A:663@O
    11063 
    11064 1 atom, 1 residue, 1 model selected 
    11065 
    11066 > hide sel surfaces
    11067 
    11068 > select clear
    11069 
    11070 > select #6/A:569@O
    11071 
    11072 1 atom, 1 residue, 1 model selected 
    11073 
    11074 > hide sel surfaces
    11075 
    11076 > select #6/A:528@O
    11077 
    11078 1 atom, 1 residue, 1 model selected 
    11079 
    11080 > hide sel surfaces
    11081 
    11082 > select #6/A:538@O
    11083 
    11084 1 atom, 1 residue, 1 model selected 
    11085 
    11086 > hide sel surfaces
    11087 
    11088 > select #6/A:312@O
    11089 
    11090 1 atom, 1 residue, 1 model selected 
    11091 
    11092 > hide sel surfaces
    11093 
    11094 [Repeated 1 time(s)]
    11095 
    11096 > select #6/A:408@O
    11097 
    11098 1 atom, 1 residue, 1 model selected 
    11099 
    11100 > hide sel surfaces
    11101 
    11102 > select #6/A:303@O
    11103 
    11104 1 atom, 1 residue, 1 model selected 
    11105 
    11106 > hide sel surfaces
    11107 
    11108 > select #6/A:296@O
    11109 
    11110 1 atom, 1 residue, 1 model selected 
    11111 
    11112 > hide sel surfaces
    11113 
    11114 > select clear
    11115 
    11116 > select #6/A:322@O
    11117 
    11118 1 atom, 1 residue, 1 model selected 
    11119 
    11120 > hide sel surfaces
    11121 
    11122 > select #6/A:130@O
    11123 
    11124 1 atom, 1 residue, 1 model selected 
    11125 
    11126 > hide sel surfaces
    11127 
    11128 > select clear
    11129 
    11130 > select #6/A:211@O
    11131 
    11132 1 atom, 1 residue, 1 model selected 
    11133 
    11134 > hide sel surfaces
    11135 
    11136 > select #6/A:201@O
    11137 
    11138 1 atom, 1 residue, 1 model selected 
    11139 
    11140 > hide sel surfaces
    11141 
    11142 > select clear
    11143 
    11144 > select #6/A:216@O
    11145 
    11146 1 atom, 1 residue, 1 model selected 
    11147 
    11148 > hide sel surfaces
    11149 
    11150 > select clear
    11151 
    11152 > select #6/A:220@O
    11153 
    11154 1 atom, 1 residue, 1 model selected 
    11155 
    11156 > hide sel surfaces
    11157 
    11158 > select #6/A:536@O
    11159 
    11160 1 atom, 1 residue, 1 model selected 
    11161 
    11162 > hide sel surfaces
    11163 
    11164 > select #6/A:527@O
    11165 
    11166 1 atom, 1 residue, 1 model selected 
    11167 
    11168 > hide sel surfaces
    11169 
    11170 > select #6/A:623@O
    11171 
    11172 1 atom, 1 residue, 1 model selected 
    11173 
    11174 > hide sel surfaces
    11175 
    11176 > select #6/A:554@O
    11177 
    11178 1 atom, 1 residue, 1 model selected 
    11179 
    11180 > hide sel surfaces
    11181 
    11182 > select #6/A:443@O
    11183 
    11184 1 atom, 1 residue, 1 model selected 
    11185 
    11186 > hide sel surfaces
    11187 
    11188 > select #6/A:974@O
    11189 
    11190 1 atom, 1 residue, 1 model selected 
    11191 
    11192 > hide sel surfaces
    11193 
    11194 > select clear
    11195 
    11196 [Repeated 1 time(s)]
    11197 
    11198 > select #6/A:745@O
    11199 
    11200 1 atom, 1 residue, 1 model selected 
    11201 
    11202 > hide sel surfaces
    11203 
    11204 > select #6/A:761@O
    11205 
    11206 1 atom, 1 residue, 1 model selected 
    11207 
    11208 > hide sel surfaces
    11209 
    11210 > select #6/A:735@O
    11211 
    11212 1 atom, 1 residue, 1 model selected 
    11213 
    11214 > hide sel surfaces
    11215 
    11216 > select #6/A:815@O
    11217 
    11218 1 atom, 1 residue, 1 model selected 
    11219 
    11220 > hide sel surfaces
    11221 
    11222 > select #6/A:967@O
    11223 
    11224 1 atom, 1 residue, 1 model selected 
    11225 
    11226 > hide sel surfaces
    11227 
    11228 > select clear
    11229 
    11230 [Repeated 2 time(s)]
    11231 
    11232 > select #6/A:968@O
    11233 
    11234 1 atom, 1 residue, 1 model selected 
    11235 
    11236 > hide sel surfaces
    11237 
    11238 > select #6/A:788@O
    11239 
    11240 1 atom, 1 residue, 1 model selected 
    11241 
    11242 > hide sel surfaces
    11243 
    11244 > select clear
    11245 
    11246 > select #6/A:741@O
    11247 
    11248 1 atom, 1 residue, 1 model selected 
    11249 
    11250 > hide sel surfaces
    11251 
    11252 > select #6/A:600@O
    11253 
    11254 1 atom, 1 residue, 1 model selected 
    11255 
    11256 > hide sel surfaces
    11257 
    11258 > select #6/A:384@O
    11259 
    11260 1 atom, 1 residue, 1 model selected 
    11261 
    11262 > hide sel surfaces
    11263 
    11264 > select #6/A:283@O
    11265 
    11266 1 atom, 1 residue, 1 model selected 
    11267 
    11268 > hide sel surfaces
    11269 
    11270 > select #6/A:581@O
    11271 
    11272 1 atom, 1 residue, 1 model selected 
    11273 
    11274 > hide sel surfaces
    11275 
    11276 > select clear
    11277 
    11278 [Repeated 1 time(s)]
    11279 
    11280 > select #6/A:829@O
    11281 
    11282 1 atom, 1 residue, 1 model selected 
    11283 
    11284 > hide sel surfaces
    11285 
    11286 > select #6/A:750@O
    11287 
    11288 1 atom, 1 residue, 1 model selected 
    11289 
    11290 > hide sel surfaces
    11291 
    11292 > select #6/A:2118@O
    11293 
    11294 1 atom, 1 residue, 1 model selected 
    11295 
    11296 > select add #6.1
    11297 
    11298 3239 atoms, 3239 residues, 4 models selected 
    11299 
    11300 > select subtract #6.1
    11301 
    11302 1 model selected 
    11303 
    11304 > select add #6.1.1
    11305 
    11306 1 model selected 
    11307 
    11308 > select subtract #6.1.1
    11309 
    11310 Nothing selected 
    11311 
    11312 > select add #6.1.2
    11313 
    11314 1 model selected 
    11315 
    11316 > select subtract #6.1.2
    11317 
    11318 Nothing selected 
    11319 
    11320 > select add #6.2
    11321 
    11322 2066 atoms, 2066 residues, 2 models selected 
    11323 
    11324 > select subtract #6.2
    11325 
    11326 1 model selected 
    11327 
    11328 > select add #6.2
    11329 
    11330 2066 atoms, 2066 residues, 2 models selected 
    11331 
    11332 > select subtract #6.2
    11333 
    11334 1 model selected 
    11335 
    11336 > select add #6.3
    11337 
    11338 385 atoms, 385 residues, 2 models selected 
    11339 
    11340 > select subtract #6.3
    11341 
    11342 1 model selected 
    11343 
    11344 > hide #!5 models
    11345 
    11346 > show #!5 models
    11347 
    11348 > select add #5
    11349 
    11350 7091 atoms, 5298 bonds, 7091 residues, 1 model selected 
    11351 
    11352 > show sel surfaces
    11353 
    11354 > select clear
    11355 
    11356 > select #11/Q:59
    11357 
    11358 9 atoms, 8 bonds, 1 residue, 1 model selected 
    11359 
    11360 > select clear
    11361 
    11362 > lighting soft
    11363 
    11364 > select clear
    11365 
    11366 > select #6/A:2013@O
    11367 
    11368 1 atom, 1 residue, 1 model selected 
    11369 
    11370 > select clear
    11371 
    11372 > color #6 #508ebf60
    11373 
    11374 > color #6 #50abbf60
    11375 
    11376 > color #6 #50a7bf60
    11377 
    11378 > color #6 #b9bec860
    11379 
    11380 > color #6 #b8bfc860
    11381 
    11382 > color #6 #b7bfc860
    11383 
    11384 > color #6 #b6bfc860
    11385 
    11386 > color #6 #c89e9d60
    11387 
    11388 > color #6 #8bc8a060
    11389 
    11390 > color #6 #76c8b460
    11391 
    11392 > color #6 #74c0c860
    11393 
    11394 > color #6 #63b2c860
    11395 
    11396 > color #6 #5bb4c860
    11397 
    11398 > color #6 #6cb1c860
    11399 
    11400 > color #6 #76c2c860
    11401 
    11402 > color #6 #6cc0c860
    11403 
    11404 > color #6 #69c2c860
    11405 
    11406 > color #6 #6cc4c860
    11407 
    11408 > color #6 #6cc4c868
    11409 
    11410 > color #6 #65b8bc68
    11411 
    11412 > color #6 #65b8bc69
    11413 
    11414 > save "/Users/wujingyi/Desktop/figure/figure4/state1_Fo_a2hollow+AA 整体.png"
    11415 > width 1660 height 1151 supersample 3 transparentBackground true
    11416 
    11417 > color #5 #f6a73fad
    11418 
    11419 > color #5 #f6a73f99
    11420 
    11421 > color #5 #efd85899
    11422 
    11423 > color #5 #efc36299
    11424 
    11425 > color #5 #efbd7799
    11426 
    11427 > color #5 #efb96c99
    11428 
    11429 > ui tool show "Color Actions"
    11430 
    11431 > color sandy brown
    11432 
    11433 > undo
    11434 
    11435 > color #5 #ecc08499
    11436 
    11437 > color #5 #ecbc8099
    11438 
    11439 > color #6 #65b8bca8
    11440 
    11441 > color #6 #65b8bcb3
    11442 
    11443 > save "/Users/wujingyi/Desktop/figure/figure4/state1_Fo_a2hollow+AA 整体.png"
    11444 > width 1660 height 1151 supersample 3 transparentBackground true
    11445 
    11446 > select #1/Z:89
    11447 
    11448 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11449 
    11450 > select #1/Z:89-94
    11451 
    11452 30 atoms, 29 bonds, 6 residues, 1 model selected 
    11453 
    11454 > select #1/Z:89
    11455 
    11456 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11457 
    11458 > select #1/Z:89-107
    11459 
    11460 95 atoms, 94 bonds, 19 residues, 1 model selected 
    11461 
    11462 > color (#!1 & sel) #008f00ff
    11463 
    11464 [Repeated 1 time(s)]
    11465 
    11466 > color (#!1 & sel) #008f00f2
    11467 
    11468 > color (#!1 & sel) #008f00dd
    11469 
    11470 > color (#!1 & sel) #008f00da
    11471 
    11472 > color (#!1 & sel) #008f00ca
    11473 
    11474 > color (#!1 & sel) #008f00ba
    11475 
    11476 > color (#!1 & sel) #008f00b7
    11477 
    11478 > color (#!1 & sel) #008f00af
    11479 
    11480 > color (#!1 & sel) #008f00a6
    11481 
    11482 > color (#!1 & sel) #008f00c1
    11483 
    11484 > color (#!1 & sel) #008f00d2
    11485 
    11486 > color (#!1 & sel) #008f00d3
    11487 
    11488 > color (#!1 & sel) #008f00de
    11489 
    11490 > color (#!1 & sel) #008f00ff
    11491 
    11492 > select clear
    11493 
    11494 > select #1/Z:89
    11495 
    11496 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11497 
    11498 > select #1/Z:89-107
    11499 
    11500 95 atoms, 94 bonds, 19 residues, 1 model selected 
    11501 
    11502 > hide sel cartoons
    11503 
    11504 > select #1/Z:89
    11505 
    11506 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11507 
    11508 > select #1/Z:89-110
    11509 
    11510 110 atoms, 109 bonds, 22 residues, 1 model selected 
    11511 
    11512 > hide sel cartoons
    11513 
    11514 > select clear
    11515 
    11516 > save "/Users/wujingyi/Desktop/figure/figure4/state1_Fo_a2hollow+AA 整体.png"
    11517 > width 1660 height 1151 supersample 3 transparentBackground true
    11518 
    11519 > select #1/Z:89
    11520 
    11521 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11522 
    11523 > select #1/Z:89-108
    11524 
    11525 100 atoms, 99 bonds, 20 residues, 1 model selected 
    11526 
    11527 > save "/Users/wujingyi/Desktop/figure/figure4/state1_Fo_a2hollow+AA 整体.cxs"
    11528 > includeMaps true
    11529 
    11530 > select #1/Z:221
    11531 
    11532 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11533 
    11534 > select #1/Z:221-224
    11535 
    11536 18 atoms, 17 bonds, 4 residues, 1 model selected 
    11537 
    11538 > select #1/Z:199
    11539 
    11540 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11541 
    11542 > select #1/Z:199-204
    11543 
    11544 30 atoms, 29 bonds, 6 residues, 1 model selected 
    11545 
    11546 > select #1/Z:239-240
    11547 
    11548 10 atoms, 9 bonds, 2 residues, 1 model selected 
    11549 
    11550 > select #1/Z:239-315
    11551 
    11552 555 atoms, 564 bonds, 77 residues, 1 model selected 
    11553 
    11554 > hide sel cartoons
    11555 
    11556 > hide #!6 models
    11557 
    11558 > hide #!5 models
    11559 
    11560 > hide #!11 models
    11561 
    11562 > hide sel atoms
    11563 
    11564 > select clear
    11565 
    11566 > select #1/Z:89
    11567 
    11568 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11569 
    11570 > select #1/Z:89-111
    11571 
    11572 115 atoms, 114 bonds, 23 residues, 1 model selected 
    11573 
    11574 > show sel cartoons
    11575 
    11576 > select clear
    11577 
    11578 > save "/Users/wujingyi/Desktop/figure/figure4/state1_Fo_a2hollow+AA
    11579 > exH6H7.png" width 1660 height 1151 supersample 3 transparentBackground true
    11580 
    11581 > select #1/Z:239-240
    11582 
    11583 10 atoms, 9 bonds, 2 residues, 1 model selected 
    11584 
    11585 > select #1/Z:239-315
    11586 
    11587 555 atoms, 564 bonds, 77 residues, 1 model selected 
    11588 
    11589 > show sel cartoons
    11590 
    11591 > select clear
    11592 
    11593 > select #1/Z:238
    11594 
    11595 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11596 
    11597 > select #1/Z:1-238
    11598 
    11599 987 atoms, 985 bonds, 1 pseudobond, 201 residues, 2 models selected 
    11600 
    11601 > hide sel cartoons
    11602 
    11603 > show #!6 models
    11604 
    11605 > show #!5 models
    11606 
    11607 > select
    11608 > #1/Z:2-22,46-49,59-78,89-107,112-133,195-197,199-218,221-232,239-274,281-314
    11609 
    11610 1117 atoms, 1117 bonds, 191 residues, 1 model selected 
    11611 
    11612 > select #1/Z:259
    11613 
    11614 11 atoms, 10 bonds, 1 residue, 1 model selected 
    11615 
    11616 > select #1/Z:259
    11617 
    11618 11 atoms, 10 bonds, 1 residue, 1 model selected 
    11619 
    11620 > show sel atoms
    11621 
    11622 > select clear
    11623 
    11624 > show #!11 models
    11625 
    11626 > select clear
    11627 
    11628 > save "/Users/wujingyi/Desktop/figure/figure4/state1_Fo_a2hollow+AA H6H7.png"
    11629 > width 1660 height 1151 supersample 3 transparentBackground true
    11630 
    11631 > select #1/Z:202
    11632 
    11633 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11634 
    11635 > select #1/Z:202
    11636 
    11637 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11638 
    11639 > select #1/Z:187
    11640 
    11641 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11642 
    11643 > select #1/Z:187
    11644 
    11645 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11646 
    11647 > show sel atoms
    11648 
    11649 > select clear
    11650 
    11651 > select add #11.12
    11652 
    11653 535 atoms, 74 residues, 1 model selected 
    11654 
    11655 > show sel atoms
    11656 
    11657 > select add #1.21
    11658 
    11659 2123 atoms, 339 residues, 3 models selected 
    11660 
    11661 > select subtract #11.12
    11662 
    11663 1588 atoms, 265 residues, 3 models selected 
    11664 
    11665 > hide sel atoms
    11666 
    11667 > undo
    11668 
    11669 [Repeated 3 time(s)]
    11670 
    11671 > select subtract #11.12
    11672 
    11673 1 model selected 
    11674 
    11675 Cell requested for row 0 is out of bounds for table with 64 rows! Resizing
    11676 table model. 
    11677 
    11678 > hide #!1 models
    11679 
    11680 > select add #11.15
    11681 
    11682 535 atoms, 74 residues, 1 model selected 
    11683 
    11684 > select subtract #11.15
    11685 
    11686 1 model selected 
    11687 
    11688 > select add #11.12
    11689 
    11690 535 atoms, 74 residues, 1 model selected 
    11691 
    11692 > show sel atoms
    11693 
    11694 > select subtract #11.12
    11695 
    11696 1 model selected 
    11697 
    11698 > select add #11
    11699 
    11700 37992 atoms, 38497 bonds, 3 pseudobonds, 5372 residues, 2 models selected 
    11701 
    11702 > select subtract #11
    11703 
    11704 26 models selected 
    11705 
    11706 > undo
    11707 
    11708 [Repeated 3 time(s)]
    11709 
    11710 > select subtract #11.12
    11711 
    11712 1 model selected 
    11713 
    11714 > select add #11.12
    11715 
    11716 535 atoms, 74 residues, 1 model selected 
    11717 
    11718 > show sel cartoons
    11719 
    11720 Alignment identifier is 11/K 
    11721 
    11722 > select #11/K:58
    11723 
    11724 7 atoms, 6 bonds, 1 residue, 1 model selected 
    11725 
    11726 > select #11/K:58-61
    11727 
    11728 29 atoms, 28 bonds, 4 residues, 1 model selected 
    11729 
    11730 > show sel cartoons
    11731 
    11732 [Repeated 1 time(s)]
    11733 
    11734 > show sel atoms
    11735 
    11736 > select #11/K:59
    11737 
    11738 9 atoms, 8 bonds, 1 residue, 1 model selected 
    11739 
    11740 > select #11/K:59
    11741 
    11742 9 atoms, 8 bonds, 1 residue, 1 model selected 
    11743 
    11744 > show sel atoms
    11745 
    11746 > select clear
    11747 
    11748 > select add #11.12
    11749 
    11750 535 atoms, 74 residues, 1 model selected 
    11751 
    11752 > hide sel cartoons
    11753 
    11754 > select clear
    11755 
    11756 > select #11/K:58
    11757 
    11758 7 atoms, 6 bonds, 1 residue, 1 model selected 
    11759 
    11760 > select #11/K:58-61
    11761 
    11762 29 atoms, 28 bonds, 4 residues, 1 model selected 
    11763 
    11764 > show sel cartoons
    11765 
    11766 > select clear
    11767 
    11768 > select #11/K:59
    11769 
    11770 9 atoms, 8 bonds, 1 residue, 1 model selected 
    11771 
    11772 > select #11/K:59
    11773 
    11774 9 atoms, 8 bonds, 1 residue, 1 model selected 
    11775 
    11776 > color (#!11 & sel) byhetero
    11777 
    11778 > select clear
    11779 
    11780 > select #11/K:58
    11781 
    11782 7 atoms, 6 bonds, 1 residue, 1 model selected 
    11783 
    11784 > select #11/K:58
    11785 
    11786 7 atoms, 6 bonds, 1 residue, 1 model selected 
    11787 
    11788 > select #11/K:60
    11789 
    11790 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11791 
    11792 > select #11/K:60-61
    11793 
    11794 13 atoms, 12 bonds, 2 residues, 1 model selected 
    11795 
    11796 > hide sel atoms
    11797 
    11798 > select #11/K:58
    11799 
    11800 7 atoms, 6 bonds, 1 residue, 1 model selected 
    11801 
    11802 > select #11/K:58
    11803 
    11804 7 atoms, 6 bonds, 1 residue, 1 model selected 
    11805 
    11806 > hide sel atoms
    11807 
    11808 > select clear
    11809 
    11810 > show #!1 models
    11811 
    11812 > select add #5
    11813 
    11814 7091 atoms, 5298 bonds, 7091 residues, 4 models selected 
    11815 
    11816 > select add #6
    11817 
    11818 12781 atoms, 9914 bonds, 12781 residues, 9 models selected 
    11819 
    11820 > select clear
    11821 
    11822 > select #5/F:8194@O
    11823 
    11824 1 atom, 1 residue, 1 model selected 
    11825 
    11826 > hide sel surfaces
    11827 
    11828 > select #1/Z:298
    11829 
    11830 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11831 
    11832 > select clear
    11833 
    11834 > select #11/K:58
    11835 
    11836 7 atoms, 6 bonds, 1 residue, 1 model selected 
    11837 
    11838 > hide sel cartoons
    11839 
    11840 > select #11/K:61
    11841 
    11842 8 atoms, 7 bonds, 1 residue, 1 model selected 
    11843 
    11844 > hide sel cartoons
    11845 
    11846 > select clear
    11847 
    11848 > color #6 #65b8bcbe
    11849 
    11850 [Repeated 1 time(s)]
    11851 
    11852 > color #6 #65b8bcbf
    11853 
    11854 > color #5 #ecbc80ae
    11855 
    11856 > color #5 #ecbc80bf
    11857 
    11858 > select clear
    11859 
    11860 > save "/Users/wujingyi/Desktop/figure/figure4/state1_Fo_a2hollow+AA H6H7.png"
    11861 > width 1660 height 1151 supersample 3 transparentBackground true
    11862 
    11863 > select #1/Z:1-2
    11864 
    11865 10 atoms, 9 bonds, 2 residues, 1 model selected 
    11866 
    11867 > select #1/Z
    11868 
    11869 1542 atoms, 1550 bonds, 1 pseudobond, 278 residues, 2 models selected 
    11870 
    11871 > show sel cartoons
    11872 
    11873 > select clear
    11874 
    11875 > select #1/Z:1
    11876 
    11877 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11878 
    11879 > select #1/Z:1-238
    11880 
    11881 987 atoms, 985 bonds, 1 pseudobond, 201 residues, 2 models selected 
    11882 
    11883 > hide sel cartoons
    11884 
    11885 > select clear
    11886 
    11887 > save "/Users/wujingyi/Desktop/figure/figure4/state1_Fo_a2hollow+AA H6H7.png"
    11888 > width 1660 height 1151 supersample 3 transparentBackground true
    11889 
    11890 > select #1/Z:239-241
    11891 
    11892 15 atoms, 14 bonds, 3 residues, 1 model selected 
    11893 
    11894 > select #1/Z:239-315
    11895 
    11896 555 atoms, 564 bonds, 77 residues, 1 model selected 
    11897 
    11898 > select #1/Z:1
    11899 
    11900 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11901 
    11902 > select #1/Z:1-238
    11903 
    11904 987 atoms, 985 bonds, 1 pseudobond, 201 residues, 2 models selected 
    11905 
    11906 > show sel cartoons
    11907 
    11908 > select #1/Z:239
    11909 
    11910 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11911 
    11912 > select #1/Z:239-315
    11913 
    11914 555 atoms, 564 bonds, 77 residues, 1 model selected 
    11915 
    11916 > hide sel cartoons
    11917 
    11918 > hide #!5 models
    11919 
    11920 > hide #!6 models
    11921 
    11922 > hide #!11 models
    11923 
    11924 > hide sel atoms
    11925 
    11926 > select clear
    11927 
    11928 > select #1/Z:35
    11929 
    11930 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11931 
    11932 > select #1/Z:35
    11933 
    11934 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11935 
    11936 > select #1/Z:35-44
    11937 
    11938 48 atoms, 47 bonds, 10 residues, 1 model selected 
    11939 
    11940 > select #1/Z:23
    11941 
    11942 4 atoms, 3 bonds, 1 residue, 1 model selected 
    11943 
    11944 > select #1/Z:23-35
    11945 
    11946 64 atoms, 63 bonds, 13 residues, 1 model selected 
    11947 
    11948 > select #1/Z:24-25
    11949 
    11950 10 atoms, 9 bonds, 2 residues, 1 model selected 
    11951 
    11952 > select #1/Z:24-35
    11953 
    11954 60 atoms, 59 bonds, 12 residues, 1 model selected 
    11955 
    11956 > hide sel cartoons
    11957 
    11958 > select clear
    11959 
    11960 > save "/Users/wujingyi/Desktop/figure/figure4/state1_Fo_a2hollow+AA
    11961 > exH6H7.png" width 1660 height 1151 supersample 3 transparentBackground true
    11962 
    11963 > select #1/Z:227
    11964 
    11965 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11966 
    11967 > select #1/Z:228
    11968 
    11969 5 atoms, 4 bonds, 1 residue, 1 model selected 
    11970 
    11971 > show sel atoms
    11972 
    11973 > select clear
    11974 
    11975 > select #1/Z:1-7
    11976 
    11977 35 atoms, 34 bonds, 7 residues, 1 model selected 
    11978 
    11979 > select #1/Z
    11980 
    11981 1542 atoms, 1550 bonds, 1 pseudobond, 278 residues, 2 models selected 
    11982 
    11983 > show sel cartoons
    11984 
    11985 > select clear
    11986 
    11987 > show #!5 models
    11988 
    11989 > show #!6 models
    11990 
    11991 > show #!11 models
    11992 
    11993 > select clear
    11994 
    11995 > save "/Users/wujingyi/Desktop/figure/figure4/state1_Fo_a2hollow+AA 整体.cxs"
    11996 > includeMaps true
    11997 
    11998 ——— End of log from Thu Mar 27 15:32:10 2025 ———
    11999 
    12000 opened ChimeraX session 
    12001 
    12002 > ui tool show "Model Panel"
    12003 
    12004 > hide #!6 models
    12005 
    12006 > hide #!5 models
    12007 
    12008 > hide #!11 models
    12009 
    12010 > show #!11 models
    12011 
    12012 > hide #!11 models
    12013 
    12014 > show #!11 models
    12015 
    12016 > hide #!1 models
    12017 
    12018 > show #!8 models
    12019 
    12020 > hide #!8 models
    12021 
    12022 > show #!1 models
    12023 
    12024 > select add #1.21
    12025 
    12026 1588 atoms, 265 residues, 1 model selected 
    12027 
    12028 > show sel cartoons
    12029 
    12030 > select subtract #1.21
    12031 
    12032 1 model selected 
    12033 
    12034 > select add #1.27
    12035 
    12036 1542 atoms, 278 residues, 1 model selected 
    12037 
    12038 > hide sel cartoons
    12039 
    12040 > ui tool show "Side View"
    12041 
    12042 > ui mousemode right select
    12043 
    12044 Drag select of 10 atoms, 8 bonds 
    12045 
    12046 > hide sel atoms
    12047 
    12048 Drag select of 30 atoms, 6 residues, 25 bonds 
    12049 
    12050 > hide sel atoms
    12051 
    12052 > hide sel cartoons
    12053 
    12054 > select add #11
    12055 
    12056 37992 atoms, 38497 bonds, 3 pseudobonds, 5372 residues, 7 models selected 
    12057 
    12058 > select subtract #11
    12059 
    12060 26 models selected 
    12061 
    12062 > select add #11.9
    12063 
    12064 543 atoms, 75 residues, 1 model selected 
    12065 
    12066 > select add #11.10
    12067 
    12068 1059 atoms, 147 residues, 2 models selected 
    12069 
    12070 > select add #11.11
    12071 
    12072 1594 atoms, 221 residues, 3 models selected 
    12073 
    12074 > select add #11.13
    12075 
    12076 2137 atoms, 296 residues, 4 models selected 
    12077 
    12078 > select add #11.12
    12079 
    12080 2672 atoms, 370 residues, 5 models selected 
    12081 
    12082 > show sel cartoons
    12083 
    12084 > hide sel cartoons
    12085 
    12086 > select subtract #11.9
    12087 
    12088 2129 atoms, 295 residues, 6 models selected 
    12089 
    12090 > select subtract #11.10
    12091 
    12092 1613 atoms, 223 residues, 5 models selected 
    12093 
    12094 > select subtract #11.11
    12095 
    12096 1078 atoms, 149 residues, 4 models selected 
    12097 
    12098 > select subtract #11.12
    12099 
    12100 543 atoms, 75 residues, 3 models selected 
    12101 
    12102 > select subtract #11.13
    12103 
    12104 1 model selected 
    12105 
    12106 > select add #11.14
    12107 
    12108 535 atoms, 74 residues, 1 model selected 
    12109 
    12110 > select add #11.15
    12111 
    12112 1070 atoms, 148 residues, 2 models selected 
    12113 
    12114 > select add #11.16
    12115 
    12116 1613 atoms, 223 residues, 3 models selected 
    12117 
    12118 > select add #11.17
    12119 
    12120 2156 atoms, 298 residues, 4 models selected 
    12121 
    12122 > select add #11.18
    12123 
    12124 2683 atoms, 371 residues, 5 models selected 
    12125 
    12126 > show sel cartoons
    12127 
    12128 Alignment identifier is 11/Q 
    12129 Alignment identifier is 1 
    12130 Alignment identifier is 2 
    12131 
    12132 > select clear
    12133 
    12134 > select #11/N,M:3
    12135 
    12136 16 atoms, 14 bonds, 2 residues, 1 model selected 
    12137 
    12138 > select #11/N,M
    12139 
    12140 1070 atoms, 1086 bonds, 148 residues, 1 model selected 
    12141 
    12142 > hide sel cartoons
    12143 
    12144 > select #11/N,M:58
    12145 
    12146 14 atoms, 12 bonds, 2 residues, 1 model selected 
    12147 
    12148 > select #11/N,M:58-61
    12149 
    12150 58 atoms, 56 bonds, 8 residues, 1 model selected 
    12151 
    12152 > show sel atoms
    12153 
    12154 > show sel cartoons
    12155 
    12156 > hide sel atoms
    12157 
    12158 > select #11/P,O:58
    12159 
    12160 14 atoms, 12 bonds, 2 residues, 1 model selected 
    12161 
    12162 > select #11/P,O:58-60
    12163 
    12164 42 atoms, 40 bonds, 6 residues, 1 model selected 
    12165 
    12166 > select #11/P,O:3
    12167 
    12168 16 atoms, 14 bonds, 2 residues, 1 model selected 
    12169 
    12170 > select #11/P,O
    12171 
    12172 1086 atoms, 1102 bonds, 150 residues, 1 model selected 
    12173 
    12174 > hide sel cartoons
    12175 
    12176 > select #11/P,O:58
    12177 
    12178 14 atoms, 12 bonds, 2 residues, 1 model selected 
    12179 
    12180 > select #11/P,O:58-61
    12181 
    12182 58 atoms, 56 bonds, 8 residues, 1 model selected 
    12183 
    12184 > show sel cartoons
    12185 
    12186 > select #11/Q:3
    12187 
    12188 8 atoms, 7 bonds, 1 residue, 1 model selected 
    12189 
    12190 > select #11/Q
    12191 
    12192 527 atoms, 535 bonds, 73 residues, 1 model selected 
    12193 
    12194 > hide sel cartoons
    12195 
    12196 > select #11/Q:58
    12197 
    12198 7 atoms, 6 bonds, 1 residue, 1 model selected 
    12199 
    12200 > select #11/Q:58-61
    12201 
    12202 29 atoms, 28 bonds, 4 residues, 1 model selected 
    12203 
    12204 > show sel cartoons
    12205 
    12206 > select clear
    12207 
    12208 Drag select of 13 residues 
    12209 
    12210 > hide sel cartoons
    12211 
    12212 Drag select of 9 residues 
    12213 
    12214 > hide sel cartoons
    12215 
    12216 > select clear
    12217 
    12218 Drag select of 7 residues 
    12219 
    12220 > show sel cartoons
    12221 
    12222 > ~hbonds
    12223 
    12224 Alignment identifier is 1/T 
    12225 
    12226 > select #1/T:241
    12227 
    12228 7 atoms, 6 bonds, 1 residue, 1 model selected 
    12229 
    12230 > select #1/T:241-250
    12231 
    12232 78 atoms, 78 bonds, 10 residues, 1 model selected 
    12233 
    12234 > show sel cartoons
    12235 
    12236 > select clear
    12237 
    12238 > show #!4 models
    12239 
    12240 > show #!2 models
    12241 
    12242 > hide #!2 models
    12243 
    12244 > hide #!4 models
    12245 
    12246 > show #!8 models
    12247 
    12248 > hide #!1 models
    12249 
    12250 > hide #!11 models
    12251 
    12252 > show #!2 models
    12253 
    12254 > show #!4 models
    12255 
    12256 > ui tool show Matchmaker
    12257 
    12258 > matchmaker #1/T to #8/T pairing ss
    12259 
    12260 Parameters 
    12261 --- 
    12262 Chain pairing | ss 
    12263 Alignment algorithm | Needleman-Wunsch 
    12264 Similarity matrix | BLOSUM-62 
    12265 SS fraction | 0.3 
    12266 Gap open (HH/SS/other) | 18/18/6 
    12267 Gap extend | 1 
    12268 SS matrix |  |  | H | S | O 
    12269 ---|---|---|--- 
    12270 H | 6 | -9 | -6 
    12271 S |  | 6 | -6 
    12272 O |  |  | 4 
    12273 Iteration cutoff | 2 
    12274  
    12275 Matchmaker RfxATP_state_1_Fo-4-coot-0.pdb, chain T (#8) with
    12276 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb, chain T (#1), sequence
    12277 alignment score = 1188.2 
    12278 RMSD between 144 pruned atom pairs is 1.326 angstroms; (across all 265 pairs:
    12279 3.573) 
    12280  
    12281 
    12282 > matchmaker #1/T to #8/T pairing ss
    12283 
    12284 Parameters 
    12285 --- 
    12286 Chain pairing | ss 
    12287 Alignment algorithm | Needleman-Wunsch 
    12288 Similarity matrix | BLOSUM-62 
    12289 SS fraction | 0.3 
    12290 Gap open (HH/SS/other) | 18/18/6 
    12291 Gap extend | 1 
    12292 SS matrix |  |  | H | S | O 
    12293 ---|---|---|--- 
    12294 H | 6 | -9 | -6 
    12295 S |  | 6 | -6 
    12296 O |  |  | 4 
    12297 Iteration cutoff | 2 
    12298  
    12299 Matchmaker RfxATP_state_1_Fo-4-coot-0.pdb, chain T (#8) with
    12300 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb, chain T (#1), sequence
    12301 alignment score = 1188.2 
    12302 RMSD between 144 pruned atom pairs is 1.326 angstroms; (across all 265 pairs:
    12303 3.573) 
    12304  
    12305 
    12306 > show #!1 models
    12307 
    12308 > hide #!4 models
    12309 
    12310 > show #!4 models
    12311 
    12312 > hide #!8 models
    12313 
    12314 > select add #1.18
    12315 
    12316 527 atoms, 73 residues, 1 model selected 
    12317 
    12318 > select add #1.17
    12319 
    12320 1070 atoms, 148 residues, 2 models selected 
    12321 
    12322 > select add #1.16
    12323 
    12324 1613 atoms, 223 residues, 3 models selected 
    12325 
    12326 > select add #1.15
    12327 
    12328 2148 atoms, 297 residues, 4 models selected 
    12329 
    12330 > select add #1.14
    12331 
    12332 2683 atoms, 371 residues, 5 models selected 
    12333 
    12334 > show sel cartoons
    12335 
    12336 Alignment identifier is 1/Q 
    12337 Alignment identifier is 1 
    12338 Alignment identifier is 2 
    12339 
    12340 > hide sel cartoons
    12341 
    12342 > select #1/Q:59
    12343 
    12344 9 atoms, 8 bonds, 1 residue, 1 model selected 
    12345 
    12346 > select #1/Q:59-60
    12347 
    12348 14 atoms, 13 bonds, 2 residues, 1 model selected 
    12349 
    12350 > select #1/Q:59
    12351 
    12352 9 atoms, 8 bonds, 1 residue, 1 model selected 
    12353 
    12354 > select #1/Q:59
    12355 
    12356 9 atoms, 8 bonds, 1 residue, 1 model selected 
    12357 
    12358 > show sel cartoons
    12359 
    12360 > select #1/P,O:59
    12361 
    12362 18 atoms, 16 bonds, 2 residues, 1 model selected 
    12363 
    12364 > select #1/P,O:59
    12365 
    12366 18 atoms, 16 bonds, 2 residues, 1 model selected 
    12367 
    12368 > show sel cartoons
    12369 
    12370 > select #1/N,M:59
    12371 
    12372 18 atoms, 16 bonds, 2 residues, 1 model selected 
    12373 
    12374 > select #1/N,M:59
    12375 
    12376 18 atoms, 16 bonds, 2 residues, 1 model selected 
    12377 
    12378 > show sel cartoons
    12379 
    12380 > select clear
    12381 
    12382 > cartoon style #1-2,4 xsection oval modeHelix default
    12383 
    12384 > select clear
    12385 
    12386 > undo
    12387 
    12388 > cartoon style #1-2,4 modeHelix tube sides 20
    12389 
    12390 > select clear
    12391 
    12392 > hide #!4 models
    12393 
    12394 > show #!11 models
    12395 
    12396 > ui tool show Matchmaker
    12397 
    12398 > matchmaker #11/T to #8/T pairing ss
    12399 
    12400 Parameters 
    12401 --- 
    12402 Chain pairing | ss 
    12403 Alignment algorithm | Needleman-Wunsch 
    12404 Similarity matrix | BLOSUM-62 
    12405 SS fraction | 0.3 
    12406 Gap open (HH/SS/other) | 18/18/6 
    12407 Gap extend | 1 
    12408 SS matrix |  |  | H | S | O 
    12409 ---|---|---|--- 
    12410 H | 6 | -9 | -6 
    12411 S |  | 6 | -6 
    12412 O |  |  | 4 
    12413 Iteration cutoff | 2 
    12414  
    12415 Matchmaker RfxATP_state_1_Fo-4-coot-0.pdb, chain T (#8) with
    12416 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb, chain T (#11), sequence
    12417 alignment score = 1188.2 
    12418 RMSD between 144 pruned atom pairs is 1.326 angstroms; (across all 265 pairs:
    12419 3.573) 
    12420  
    12421 
    12422 > matchmaker #11/T to #8/T pairing ss
    12423 
    12424 Parameters 
    12425 --- 
    12426 Chain pairing | ss 
    12427 Alignment algorithm | Needleman-Wunsch 
    12428 Similarity matrix | BLOSUM-62 
    12429 SS fraction | 0.3 
    12430 Gap open (HH/SS/other) | 18/18/6 
    12431 Gap extend | 1 
    12432 SS matrix |  |  | H | S | O 
    12433 ---|---|---|--- 
    12434 H | 6 | -9 | -6 
    12435 S |  | 6 | -6 
    12436 O |  |  | 4 
    12437 Iteration cutoff | 2 
    12438  
    12439 Matchmaker RfxATP_state_1_Fo-4-coot-0.pdb, chain T (#8) with
    12440 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb, chain T (#11), sequence
    12441 alignment score = 1188.2 
    12442 RMSD between 144 pruned atom pairs is 1.326 angstroms; (across all 265 pairs:
    12443 3.573) 
    12444  
    12445 
    12446 > select add #11
    12447 
    12448 37992 atoms, 38497 bonds, 3 pseudobonds, 5372 residues, 2 models selected 
    12449 
    12450 > select subtract #11.2
    12451 
    12452 34187 atoms, 34634 bonds, 3 pseudobonds, 4874 residues, 28 models selected 
    12453 
    12454 > select subtract #11.3
    12455 
    12456 30394 atoms, 30783 bonds, 3 pseudobonds, 4378 residues, 27 models selected 
    12457 
    12458 > select subtract #11.4
    12459 
    12460 26572 atoms, 26903 bonds, 3 pseudobonds, 3878 residues, 26 models selected 
    12461 
    12462 > select subtract #11.5
    12463 
    12464 22978 atoms, 23246 bonds, 3 pseudobonds, 3409 residues, 25 models selected 
    12465 
    12466 > select subtract #11.7
    12467 
    12468 19392 atoms, 19597 bonds, 3 pseudobonds, 2941 residues, 24 models selected 
    12469 
    12470 > select subtract #11.6
    12471 
    12472 15787 atoms, 15929 bonds, 3 pseudobonds, 2471 residues, 23 models selected 
    12473 
    12474 > select subtract #11.8
    12475 
    12476 13505 atoms, 13619 bonds, 3 pseudobonds, 2182 residues, 22 models selected 
    12477 
    12478 > select subtract #11.19
    12479 
    12480 12425 atoms, 12529 bonds, 3 pseudobonds, 2044 residues, 21 models selected 
    12481 
    12482 > select subtract #11.20
    12483 
    12484 12060 atoms, 12165 bonds, 3 pseudobonds, 1970 residues, 20 models selected 
    12485 
    12486 > select subtract #11.21
    12487 
    12488 10472 atoms, 10562 bonds, 1 pseudobond, 1705 residues, 19 models selected 
    12489 
    12490 > select subtract #11.22
    12491 
    12492 9725 atoms, 9816 bonds, 1 pseudobond, 1555 residues, 18 models selected 
    12493 
    12494 > select subtract #11.23
    12495 
    12496 8967 atoms, 9059 bonds, 1 pseudobond, 1404 residues, 17 models selected 
    12497 
    12498 > select subtract #11.24
    12499 
    12500 8602 atoms, 8695 bonds, 1 pseudobond, 1330 residues, 16 models selected 
    12501 
    12502 > select subtract #11.25
    12503 
    12504 7860 atoms, 7954 bonds, 1 pseudobond, 1181 residues, 15 models selected 
    12505 
    12506 > select subtract #11.27
    12507 
    12508 6318 atoms, 6404 bonds, 903 residues, 13 models selected 
    12509 
    12510 > select subtract #11.26
    12511 
    12512 5566 atoms, 5653 bonds, 752 residues, 12 models selected 
    12513 
    12514 > show sel cartoons
    12515 
    12516 Alignment identifier is 11/I 
    12517 Alignment identifier is 11/Q 
    12518 Alignment identifier is 1 
    12519 Alignment identifier is 2 
    12520 
    12521 > hide sel cartoons
    12522 
    12523 Drag select of 2 residues 
    12524 
    12525 > hide sel cartoons
    12526 
    12527 Drag select of 4 residues 
    12528 
    12529 > select clear
    12530 
    12531 > select #1/N:59
    12532 
    12533 9 atoms, 8 bonds, 1 residue, 1 model selected 
    12534 
    12535 > hide sel cartoons
    12536 
    12537 > select #1/O:59
    12538 
    12539 9 atoms, 8 bonds, 1 residue, 1 model selected 
    12540 
    12541 > hide sel cartoons
    12542 
    12543 > select #1/P:59
    12544 
    12545 9 atoms, 8 bonds, 1 residue, 1 model selected 
    12546 
    12547 > hide sel cartoons
    12548 
    12549 > show #!4 models
    12550 
    12551 > select #11/N,M,K,J:59
    12552 
    12553 36 atoms, 32 bonds, 4 residues, 1 model selected 
    12554 
    12555 > select #11/N,M,K,J:59
    12556 
    12557 36 atoms, 32 bonds, 4 residues, 1 model selected 
    12558 
    12559 > show sel cartoons
    12560 
    12561 > select #11/P,O,L,H:59
    12562 
    12563 36 atoms, 32 bonds, 4 residues, 1 model selected 
    12564 
    12565 > select #11/P,O,L,H:59
    12566 
    12567 36 atoms, 32 bonds, 4 residues, 1 model selected 
    12568 
    12569 > show sel cartoons
    12570 
    12571 > select #11/Q:59
    12572 
    12573 9 atoms, 8 bonds, 1 residue, 1 model selected 
    12574 
    12575 > select #11/Q:59
    12576 
    12577 9 atoms, 8 bonds, 1 residue, 1 model selected 
    12578 
    12579 > show sel cartoons
    12580 
    12581 > select clear
    12582 
    12583 Drag select of 5 residues 
    12584 
    12585 > hide sel cartoons
    12586 
    12587 Drag select of 1 residues 
    12588 
    12589 > select clear
    12590 
    12591 > undo
    12592 
    12593 Drag select of 1 residues 
    12594 
    12595 > select #11/Q:59
    12596 
    12597 9 atoms, 8 bonds, 1 residue, 1 model selected 
    12598 
    12599 > select #11/Q:59-60
    12600 
    12601 14 atoms, 13 bonds, 2 residues, 1 model selected 
    12602 
    12603 > select #11/Q:59
    12604 
    12605 9 atoms, 8 bonds, 1 residue, 1 model selected 
    12606 
    12607 > select #11/Q:59-60
    12608 
    12609 14 atoms, 13 bonds, 2 residues, 1 model selected 
    12610 
    12611 > select #11/Q:59
    12612 
    12613 9 atoms, 8 bonds, 1 residue, 1 model selected 
    12614 
    12615 > select #11/Q:59
    12616 
    12617 9 atoms, 8 bonds, 1 residue, 1 model selected 
    12618 
    12619 > show sel cartoons
    12620 
    12621 > select clear
    12622 
    12623 > select #4/F:4727@O
    12624 
    12625 1 atom, 1 residue, 1 model selected 
    12626 
    12627 > select add #4.4
    12628 
    12629 1328 atoms, 1328 residues, 2 models selected 
    12630 
    12631 > select subtract #4.4
    12632 
    12633 1 atom, 1 residue, 3 models selected 
    12634 
    12635 > select subtract #4.1
    12636 
    12637 1 model selected 
    12638 
    12639 > select add #4.1
    12640 
    12641 230 atoms, 230 residues, 1 model selected 
    12642 
    12643 > hide sel surfaces
    12644 
    12645 > select clear
    12646 
    12647 > select #1/T:259
    12648 
    12649 11 atoms, 10 bonds, 1 residue, 1 model selected 
    12650 
    12651 > show sel atoms
    12652 
    12653 > select clear
    12654 
    12655 > select add #1.9
    12656 
    12657 543 atoms, 75 residues, 1 model selected 
    12658 
    12659 > select add #1.10
    12660 
    12661 1059 atoms, 147 residues, 2 models selected 
    12662 
    12663 > select add #1.11
    12664 
    12665 1594 atoms, 221 residues, 3 models selected 
    12666 
    12667 > select add #1.12
    12668 
    12669 2129 atoms, 295 residues, 4 models selected 
    12670 
    12671 > select add #1.13
    12672 
    12673 2672 atoms, 370 residues, 5 models selected 
    12674 
    12675 > select subtract #1.10
    12676 
    12677 2156 atoms, 298 residues, 6 models selected 
    12678 
    12679 > select subtract #1.9
    12680 
    12681 1613 atoms, 223 residues, 5 models selected 
    12682 
    12683 > select subtract #1.11
    12684 
    12685 1078 atoms, 149 residues, 4 models selected 
    12686 
    12687 > select subtract #1.12
    12688 
    12689 543 atoms, 75 residues, 3 models selected 
    12690 
    12691 > select subtract #1.13
    12692 
    12693 1 model selected 
    12694 
    12695 > select add #1.18
    12696 
    12697 527 atoms, 73 residues, 1 model selected 
    12698 
    12699 > select add #1.17
    12700 
    12701 1070 atoms, 148 residues, 2 models selected 
    12702 
    12703 > select add #1.16
    12704 
    12705 1613 atoms, 223 residues, 3 models selected 
    12706 
    12707 > select add #1.15
    12708 
    12709 2148 atoms, 297 residues, 4 models selected 
    12710 
    12711 > select add #1.14
    12712 
    12713 2683 atoms, 371 residues, 5 models selected 
    12714 
    12715 > show sel cartoons
    12716 
    12717 > select clear
    12718 
    12719 > hide #!1-2,4,11 cartoons
    12720 
    12721 > undo
    12722 
    12723 > select add #1.18
    12724 
    12725 527 atoms, 73 residues, 1 model selected 
    12726 
    12727 > select add #1.17
    12728 
    12729 1070 atoms, 148 residues, 2 models selected 
    12730 
    12731 > select add #1.16
    12732 
    12733 1613 atoms, 223 residues, 3 models selected 
    12734 
    12735 > select add #1.15
    12736 
    12737 2148 atoms, 297 residues, 4 models selected 
    12738 
    12739 > select add #1.14
    12740 
    12741 2683 atoms, 371 residues, 5 models selected 
    12742 
    12743 > hide sel cartoons
    12744 
    12745 > select add #1
    12746 
    12747 37992 atoms, 38497 bonds, 3 pseudobonds, 5372 residues, 7 models selected 
    12748 
    12749 > select subtract #1
    12750 
    12751 26 models selected 
    12752 
    12753 > select add #2
    12754 
    12755 7230 atoms, 5473 bonds, 7230 residues, 1 model selected 
    12756 
    12757 > select subtract #2
    12758 
    12759 4 models selected 
    12760 
    12761 > color #2 #efd6d180
    12762 
    12763 > color #2 #efd6d1be
    12764 
    12765 > color #2 #ecbc80be
    12766 
    12767 > color #4 #65b8bc7f
    12768 
    12769 > color #4 #65b8bcc4
    12770 
    12771 > color #4 #65b8bcc0
    12772 
    12773 > select clear
    12774 
    12775 > select #11/Q:59
    12776 
    12777 9 atoms, 8 bonds, 1 residue, 1 model selected 
    12778 
    12779 > select add #11/P:59
    12780 
    12781 18 atoms, 16 bonds, 2 residues, 2 models selected 
    12782 
    12783 > select add #11/O:59
    12784 
    12785 27 atoms, 24 bonds, 3 residues, 3 models selected 
    12786 
    12787 > select add #11/N:59
    12788 
    12789 36 atoms, 32 bonds, 4 residues, 4 models selected 
    12790 
    12791 > select add #11/M:59
    12792 
    12793 45 atoms, 40 bonds, 5 residues, 5 models selected 
    12794 
    12795 > show sel atoms
    12796 
    12797 > select clear
    12798 
    12799 > select #1/T:27
    12800 
    12801 5 atoms, 4 bonds, 1 residue, 1 model selected 
    12802 Alignment identifier is 1/T 
    12803 
    12804 > select #1/T:27
    12805 
    12806 5 atoms, 4 bonds, 1 residue, 1 model selected 
    12807 
    12808 > select #1/T:27-58
    12809 
    12810 133 atoms, 131 bonds, 1 pseudobond, 23 residues, 2 models selected 
    12811 
    12812 > hide sel cartoons
    12813 
    12814 > select clear
    12815 
    12816 > select #1/T:148
    12817 
    12818 5 atoms, 4 bonds, 1 residue, 1 model selected 
    12819 
    12820 > select #1/T:135-136
    12821 
    12822 10 atoms, 9 bonds, 2 residues, 1 model selected 
    12823 
    12824 > select #1/T:135-190
    12825 
    12826 72 atoms, 70 bonds, 1 pseudobond, 15 residues, 2 models selected 
    12827 
    12828 > hide sel cartoons
    12829 
    12830 > select clear
    12831 
    12832 > select #4/I:483@O
    12833 
    12834 1 atom, 1 residue, 1 model selected 
    12835 
    12836 > select clear
    12837 
    12838 > save "/Users/wujingyi/Desktop/figure/figure4/state1_Fo_a1hollow+AA 整体.png"
    12839 > width 1660 height 1174 supersample 3 transparentBackground true
    12840 
    12841 > save "/Users/wujingyi/Desktop/figure/figure4/state1_Fo_a1hollow+AA 整体.cxs"
    12842 
    12843 > hide #!2 models
    12844 
    12845 > hide #!4 models
    12846 
    12847 > hide #!11 models
    12848 
    12849 > coulombic #!1
    12850 
    12851 The following residues are missing heavy (non-hydrogen) atoms, which may
    12852 result in inaccurate electrostatics: 
    12853 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S ARG 85 
    12854 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S PRO 86 
    12855 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S LEU 87 
    12856 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S THR 88 
    12857 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S GLU 90 
    12858 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S VAL 91 
    12859 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S THR 92 
    12860 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S SER 93 
    12861 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S VAL 95 
    12862 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S GLU 96 
    12863 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S LEU 97 
    12864 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S SER 98 
    12865 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S PRO 99 
    12866 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S GLN 100 
    12867 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S GLN 101 
    12868 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S ARG 102 
    12869 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S GLU 103 
    12870 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S ARG 104 
    12871 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S ILE 105 
    12872 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S THR 106 
    12873 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S GLU 107 
    12874 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S GLN 108 
    12875 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S LEU 109 
    12876 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S LYS 110 
    12877 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S ARG 112 
    12878 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S TYR 113 
    12879 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S PRO 115 
    12880 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S ASP 116 
    12881 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S LEU 117 
    12882 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S GLU 118 
    12883 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S VAL 119 
    12884 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S ARG 120 
    12885 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S PHE 121 
    12886 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S SER 122 
    12887 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S VAL 123 
    12888 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S ASP 124 
    12889 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S GLU 125 
    12890 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S SER 126 
    12891 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S LEU 127 
    12892 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S ILE 128 
    12893 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S LEU 131 
    12894 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S ILE 132 
    12895 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S ILE 133 
    12896 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S ARG 134 
    12897 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S ILE 135 
    12898 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S ASP 137 
    12899 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S GLN 138 
    12900 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S VAL 139 
    12901 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S LEU 140 
    12902 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S ASP 141 
    12903 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S THR 142 
    12904 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S SER 143 
    12905 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S LEU 144 
    12906 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S ARG 145 
    12907 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S THR 146 
    12908 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S ARG 147 
    12909 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S MET 148 
    12910 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S ILE 151 
    12911 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S GLN 152 
    12912 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S ARG 153 
    12913 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S ASN 154 
    12914 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S MET 155 
    12915 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S MET 156 
    12916 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/S THR 157 
    12917 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T MET 1 
    12918 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ARG 2 
    12919 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ASN 3 
    12920 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ARG 4 
    12921 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ILE 5 
    12922 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 6 
    12923 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T THR 7 
    12924 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T VAL 8 
    12925 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T THR 9 
    12926 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ILE 11 
    12927 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 12 
    12928 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 13 
    12929 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T VAL 15 
    12930 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ILE 17 
    12931 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T VAL 18 
    12932 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 19 
    12933 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T TYR 20 
    12934 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ILE 21 
    12935 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ILE 22 
    12936 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T VAL 24 
    12937 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ARG 25 
    12938 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T SER 26 
    12939 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T THR 27 
    12940 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LYS 28 
    12941 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 29 
    12942 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T HIS 30 
    12943 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ILE 31 
    12944 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T SER 32 
    12945 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T VAL 33 
    12946 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PHE 55 
    12947 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PRO 56 
    12948 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ILE 57 
    12949 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T THR 58 
    12950 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ASN 59 
    12951 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T SER 60 
    12952 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 61 
    12953 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ILE 62 
    12954 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T THR 63 
    12955 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T THR 64 
    12956 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 65 
    12957 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ILE 66 
    12958 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T VAL 67 
    12959 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 68 
    12960 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ILE 70 
    12961 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ILE 71 
    12962 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ILE 72 
    12963 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T VAL 73 
    12964 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ILE 75 
    12965 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 76 
    12966 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PHE 89 
    12967 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T GLN 90 
    12968 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ASN 91 
    12969 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T VAL 92 
    12970 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 93 
    12971 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T GLU 94 
    12972 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T VAL 95 
    12973 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T MET 96 
    12974 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T VAL 97 
    12975 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T GLU 98 
    12976 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PHE 100 
    12977 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T TYR 101 
    12978 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ASN 102 
    12979 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PHE 103 
    12980 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T GLN 105 
    12981 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T SER 106 
    12982 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T VAL 107 
    12983 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ASP 108 
    12984 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ARG 109 
    12985 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ARG 110 
    12986 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ASN 111 
    12987 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T VAL 112 
    12988 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LYS 114 
    12989 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T VAL 135 
    12990 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PRO 136 
    12991 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T VAL 138 
    12992 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T SER 140 
    12993 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ILE 141 
    12994 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T VAL 143 
    12995 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T CYS 144 
    12996 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T VAL 145 
    12997 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PRO 146 
    12998 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T THR 147 
    12999 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PRO 190 
    13000 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T TYR 191 
    13001 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 192 
    13002 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ARG 193 
    13003 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PRO 195 
    13004 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T SER 196 
    13005 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ASP 198 
    13006 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 199 
    13007 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ASN 200 
    13008 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T VAL 201 
    13009 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T THR 202 
    13010 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 203 
    13011 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T TRP 205 
    13012 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 207 
    13013 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ILE 208 
    13014 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T SER 209 
    13015 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T VAL 210 
    13016 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 212 
    13017 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ILE 213 
    13018 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T GLN 214 
    13019 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T TYR 215 
    13020 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PHE 216 
    13021 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PHE 218 
    13022 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T GLN 219 
    13023 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 221 
    13024 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 223 
    13025 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T TYR 225 
    13026 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 226 
    13027 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T THR 227 
    13028 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LYS 228 
    13029 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PHE 229 
    13030 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PHE 230 
    13031 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ASN 231 
    13032 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PHE 232 
    13033 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T ARG 233 
    13034 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T GLU 234 
    13035 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PHE 236 
    13036 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 271 
    13037 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T VAL 272 
    13038 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T VAL 273 
    13039 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T MET 274 
    13040 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PHE 276 
    13041 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 277 
    13042 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PHE 278 
    13043 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PRO 279 
    13044 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T TYR 280 
    13045 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 281 
    13046 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T LEU 282 
    13047 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PRO 283 
    13048 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PRO 285 
    13049 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T PHE 286 
    13050 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/T TYR 287 
    13051 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 11 
    13052 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ILE 12 
    13053 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLN 14 
    13054 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 15 
    13055 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ILE 16 
    13056 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ASN 17 
    13057 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U VAL 18 
    13058 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U VAL 19 
    13059 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U PHE 20 
    13060 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U VAL 21 
    13061 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U VAL 22 
    13062 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U TRP 23 
    13063 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 24 
    13064 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 25 
    13065 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U THR 26 
    13066 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U THR 27 
    13067 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U PHE 28 
    13068 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 29 
    13069 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U TYR 30 
    13070 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ARG 31 
    13071 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U PRO 32 
    13072 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ILE 33 
    13073 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 34 
    13074 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ASN 35 
    13075 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U MET 36 
    13076 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 37 
    13077 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ASN 38 
    13078 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLN 39 
    13079 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ARG 40 
    13080 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U THR 41 
    13081 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ASN 42 
    13082 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ARG 43 
    13083 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ILE 44 
    13084 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLN 45 
    13085 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLU 46 
    13086 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 48 
    13087 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLN 49 
    13088 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ASP 50 
    13089 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLU 52 
    13090 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ARG 53 
    13091 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U VAL 54 
    13092 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ARG 55 
    13093 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLU 56 
    13094 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLN 57 
    13095 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 58 
    13096 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ASN 60 
    13097 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LYS 62 
    13098 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ARG 63 
    13099 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ASP 64 
    13100 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U TYR 65 
    13101 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ASP 66 
    13102 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLU 68 
    13103 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 69 
    13104 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LYS 71 
    13105 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ARG 73 
    13106 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLN 74 
    13107 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLU 75 
    13108 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U SER 78 
    13109 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ILE 79 
    13110 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 80 
    13111 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLN 82 
    13112 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLN 84 
    13113 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLU 85 
    13114 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ARG 86 
    13115 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ARG 88 
    13116 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLN 90 
    13117 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLU 93 
    13118 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ILE 94 
    13119 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ILE 95 
    13120 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLN 97 
    13121 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U HIS 99 
    13122 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ARG 100 
    13123 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ASP 101 
    13124 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLU 103 
    13125 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LYS 104 
    13126 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ILE 105 
    13127 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LYS 106 
    13128 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U SER 107 
    13129 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ASP 108 
    13130 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U THR 109 
    13131 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 110 
    13132 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLN 112 
    13133 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLU 114 
    13134 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLN 115 
    13135 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLU 116 
    13136 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ARG 117 
    13137 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLN 118 
    13138 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ARG 119 
    13139 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U MET 120 
    13140 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 121 
    13141 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLU 123 
    13142 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 124 
    13143 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LYS 125 
    13144 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ASP 126 
    13145 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ARG 127 
    13146 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U MET 128 
    13147 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLU 130 
    13148 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 131 
    13149 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U VAL 132 
    13150 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U VAL 133 
    13151 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 134 
    13152 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U THR 135 
    13153 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLU 137 
    13154 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ARG 138 
    13155 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U VAL 139 
    13156 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 140 
    13157 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ASN 141 
    13158 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLU 143 
    13159 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 144 
    13160 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LYS 145 
    13161 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ASN 147 
    13162 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U HIS 148 
    13163 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ASP 149 
    13164 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ARG 150 
    13165 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 151 
    13166 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U ILE 152 
    13167 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLU 153 
    13168 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLU 154 
    13169 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U SER 155 
    13170 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 156 
    13171 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U GLU 158 
    13172 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/U LEU 159 
    13173 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V TRP 8 
    13174 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 10 
    13175 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 11 
    13176 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ILE 12 
    13177 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLN 14 
    13178 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 15 
    13179 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ILE 16 
    13180 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ASN 17 
    13181 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V VAL 18 
    13182 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V VAL 19 
    13183 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V PHE 20 
    13184 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V VAL 21 
    13185 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V VAL 22 
    13186 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V TRP 23 
    13187 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 24 
    13188 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 25 
    13189 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V THR 26 
    13190 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V THR 27 
    13191 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V PHE 28 
    13192 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 29 
    13193 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V TYR 30 
    13194 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ARG 31 
    13195 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V PRO 32 
    13196 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ILE 33 
    13197 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 34 
    13198 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ASN 35 
    13199 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V MET 36 
    13200 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 37 
    13201 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ASN 38 
    13202 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLN 39 
    13203 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ARG 40 
    13204 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V THR 41 
    13205 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ASN 42 
    13206 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ARG 43 
    13207 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ILE 44 
    13208 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLN 45 
    13209 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLU 46 
    13210 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 48 
    13211 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLN 49 
    13212 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ASP 50 
    13213 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLU 52 
    13214 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ARG 53 
    13215 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V VAL 54 
    13216 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ARG 55 
    13217 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLU 56 
    13218 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLN 57 
    13219 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 58 
    13220 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ASN 60 
    13221 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LYS 62 
    13222 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ARG 63 
    13223 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ASP 64 
    13224 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V TYR 65 
    13225 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ASP 66 
    13226 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLU 68 
    13227 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 69 
    13228 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LYS 71 
    13229 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ARG 73 
    13230 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLN 74 
    13231 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLU 75 
    13232 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V SER 78 
    13233 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ILE 79 
    13234 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 80 
    13235 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLN 82 
    13236 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLN 84 
    13237 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLU 85 
    13238 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ARG 86 
    13239 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ARG 88 
    13240 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLN 90 
    13241 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLU 93 
    13242 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ILE 94 
    13243 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ILE 95 
    13244 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLN 97 
    13245 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V HIS 99 
    13246 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ARG 100 
    13247 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ASP 101 
    13248 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLU 103 
    13249 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LYS 104 
    13250 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ILE 105 
    13251 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LYS 106 
    13252 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V SER 107 
    13253 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ASP 108 
    13254 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V THR 109 
    13255 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 110 
    13256 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLN 112 
    13257 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLU 114 
    13258 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLN 115 
    13259 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLU 116 
    13260 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ARG 117 
    13261 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLN 118 
    13262 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ARG 119 
    13263 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V MET 120 
    13264 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 121 
    13265 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLU 123 
    13266 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 124 
    13267 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LYS 125 
    13268 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ASP 126 
    13269 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ARG 127 
    13270 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V MET 128 
    13271 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLU 130 
    13272 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 131 
    13273 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V VAL 132 
    13274 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V VAL 133 
    13275 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 134 
    13276 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V THR 135 
    13277 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLU 137 
    13278 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ARG 138 
    13279 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V VAL 139 
    13280 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 140 
    13281 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ASN 141 
    13282 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLU 143 
    13283 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 144 
    13284 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LYS 145 
    13285 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ASN 147 
    13286 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V HIS 148 
    13287 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ASP 149 
    13288 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ARG 150 
    13289 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 151 
    13290 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V ILE 152 
    13291 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLU 153 
    13292 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V GLU 154 
    13293 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V SER 155 
    13294 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/V LEU 156 
    13295 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W ARG 85 
    13296 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W PRO 86 
    13297 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W LEU 87 
    13298 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W THR 88 
    13299 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W GLU 90 
    13300 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W VAL 91 
    13301 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W THR 92 
    13302 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W SER 93 
    13303 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W VAL 95 
    13304 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W GLU 96 
    13305 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W LEU 97 
    13306 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W SER 98 
    13307 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W PRO 99 
    13308 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W GLN 100 
    13309 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W GLN 101 
    13310 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W ARG 102 
    13311 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W GLU 103 
    13312 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W ARG 104 
    13313 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W ILE 105 
    13314 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W THR 106 
    13315 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W GLU 107 
    13316 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W GLN 108 
    13317 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W LEU 109 
    13318 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W LYS 110 
    13319 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W ARG 112 
    13320 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W TYR 113 
    13321 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W PRO 115 
    13322 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W ASP 116 
    13323 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W LEU 117 
    13324 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W GLU 118 
    13325 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W VAL 119 
    13326 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W ARG 120 
    13327 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W PHE 121 
    13328 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W SER 122 
    13329 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W VAL 123 
    13330 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W ASP 124 
    13331 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W GLU 125 
    13332 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W SER 126 
    13333 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W LEU 127 
    13334 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W ILE 128 
    13335 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W LEU 131 
    13336 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W ILE 132 
    13337 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W ILE 133 
    13338 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W ARG 134 
    13339 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W ILE 135 
    13340 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W ASP 137 
    13341 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W GLN 138 
    13342 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W VAL 139 
    13343 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W LEU 140 
    13344 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W ASP 141 
    13345 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W THR 142 
    13346 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W SER 143 
    13347 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W LEU 144 
    13348 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W ARG 145 
    13349 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W THR 146 
    13350 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W ARG 147 
    13351 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W MET 148 
    13352 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W ILE 151 
    13353 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W GLN 152 
    13354 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W ARG 153 
    13355 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W ASN 154 
    13356 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W MET 155 
    13357 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W MET 156 
    13358 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/W THR 157 
    13359 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ILE 12 
    13360 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLN 14 
    13361 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LEU 15 
    13362 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ILE 16 
    13363 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ASN 17 
    13364 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X VAL 18 
    13365 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X VAL 19 
    13366 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X PHE 20 
    13367 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X VAL 21 
    13368 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X VAL 22 
    13369 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X TRP 23 
    13370 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LEU 24 
    13371 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LEU 25 
    13372 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X THR 26 
    13373 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X THR 27 
    13374 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X PHE 28 
    13375 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LEU 29 
    13376 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X TYR 30 
    13377 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ARG 31 
    13378 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X PRO 32 
    13379 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ILE 33 
    13380 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LEU 34 
    13381 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ASN 35 
    13382 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X MET 36 
    13383 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LEU 37 
    13384 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ASN 38 
    13385 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLN 39 
    13386 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ARG 40 
    13387 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X THR 41 
    13388 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ASN 42 
    13389 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ARG 43 
    13390 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ILE 44 
    13391 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLN 45 
    13392 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLU 46 
    13393 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LEU 48 
    13394 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLN 49 
    13395 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ASP 50 
    13396 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLU 52 
    13397 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ARG 53 
    13398 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X VAL 54 
    13399 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ARG 55 
    13400 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLU 56 
    13401 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLN 57 
    13402 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LEU 58 
    13403 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ASN 60 
    13404 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LYS 62 
    13405 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ARG 63 
    13406 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ASP 64 
    13407 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X TYR 65 
    13408 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ASP 66 
    13409 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLU 68 
    13410 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LEU 69 
    13411 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LYS 71 
    13412 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ARG 73 
    13413 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLN 74 
    13414 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLU 75 
    13415 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X SER 78 
    13416 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ILE 79 
    13417 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LEU 80 
    13418 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLN 82 
    13419 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLN 84 
    13420 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLU 85 
    13421 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ARG 86 
    13422 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ARG 88 
    13423 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLN 90 
    13424 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLU 93 
    13425 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ILE 94 
    13426 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ILE 95 
    13427 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLN 97 
    13428 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X HIS 99 
    13429 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ARG 100 
    13430 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ASP 101 
    13431 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLU 103 
    13432 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LYS 104 
    13433 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ILE 105 
    13434 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LYS 106 
    13435 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X SER 107 
    13436 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ASP 108 
    13437 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X THR 109 
    13438 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LEU 110 
    13439 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLN 112 
    13440 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLU 114 
    13441 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLN 115 
    13442 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLU 116 
    13443 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ARG 117 
    13444 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLN 118 
    13445 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ARG 119 
    13446 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X MET 120 
    13447 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LEU 121 
    13448 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLU 123 
    13449 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LEU 124 
    13450 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LYS 125 
    13451 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ASP 126 
    13452 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ARG 127 
    13453 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X MET 128 
    13454 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLU 130 
    13455 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LEU 131 
    13456 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X VAL 132 
    13457 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X VAL 133 
    13458 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LEU 134 
    13459 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X THR 135 
    13460 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLU 137 
    13461 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ARG 138 
    13462 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X VAL 139 
    13463 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LEU 140 
    13464 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ASN 141 
    13465 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLU 143 
    13466 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LEU 144 
    13467 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LYS 145 
    13468 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ASN 147 
    13469 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X HIS 148 
    13470 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ASP 149 
    13471 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ARG 150 
    13472 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LEU 151 
    13473 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X ILE 152 
    13474 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLU 153 
    13475 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLU 154 
    13476 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X SER 155 
    13477 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LEU 156 
    13478 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X GLU 158 
    13479 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/X LEU 159 
    13480 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y TRP 8 
    13481 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 10 
    13482 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 11 
    13483 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ILE 12 
    13484 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLN 14 
    13485 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 15 
    13486 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ILE 16 
    13487 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ASN 17 
    13488 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y VAL 18 
    13489 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y VAL 19 
    13490 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y PHE 20 
    13491 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y VAL 21 
    13492 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y VAL 22 
    13493 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y TRP 23 
    13494 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 24 
    13495 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 25 
    13496 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y THR 26 
    13497 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y THR 27 
    13498 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y PHE 28 
    13499 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 29 
    13500 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y TYR 30 
    13501 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ARG 31 
    13502 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y PRO 32 
    13503 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ILE 33 
    13504 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 34 
    13505 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ASN 35 
    13506 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y MET 36 
    13507 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 37 
    13508 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ASN 38 
    13509 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLN 39 
    13510 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ARG 40 
    13511 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y THR 41 
    13512 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ASN 42 
    13513 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ARG 43 
    13514 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ILE 44 
    13515 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLN 45 
    13516 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLU 46 
    13517 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 48 
    13518 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLN 49 
    13519 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ASP 50 
    13520 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLU 52 
    13521 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ARG 53 
    13522 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y VAL 54 
    13523 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ARG 55 
    13524 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLU 56 
    13525 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLN 57 
    13526 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 58 
    13527 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ASN 60 
    13528 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LYS 62 
    13529 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ARG 63 
    13530 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ASP 64 
    13531 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y TYR 65 
    13532 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ASP 66 
    13533 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLU 68 
    13534 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 69 
    13535 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LYS 71 
    13536 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ARG 73 
    13537 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLN 74 
    13538 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLU 75 
    13539 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y SER 78 
    13540 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ILE 79 
    13541 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 80 
    13542 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLN 82 
    13543 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLN 84 
    13544 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLU 85 
    13545 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ARG 86 
    13546 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ARG 88 
    13547 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLN 90 
    13548 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLU 93 
    13549 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ILE 94 
    13550 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ILE 95 
    13551 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLN 97 
    13552 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y HIS 99 
    13553 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ARG 100 
    13554 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ASP 101 
    13555 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLU 103 
    13556 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LYS 104 
    13557 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ILE 105 
    13558 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LYS 106 
    13559 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y SER 107 
    13560 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ASP 108 
    13561 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y THR 109 
    13562 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 110 
    13563 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLN 112 
    13564 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLU 114 
    13565 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLN 115 
    13566 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLU 116 
    13567 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ARG 117 
    13568 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLN 118 
    13569 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ARG 119 
    13570 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y MET 120 
    13571 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 121 
    13572 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLU 123 
    13573 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 124 
    13574 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LYS 125 
    13575 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ASP 126 
    13576 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ARG 127 
    13577 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y MET 128 
    13578 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLU 130 
    13579 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 131 
    13580 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y VAL 132 
    13581 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y VAL 133 
    13582 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 134 
    13583 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y THR 135 
    13584 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLU 137 
    13585 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ARG 138 
    13586 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y VAL 139 
    13587 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 140 
    13588 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ASN 141 
    13589 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLU 143 
    13590 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 144 
    13591 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LYS 145 
    13592 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ASN 147 
    13593 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y HIS 148 
    13594 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ASP 149 
    13595 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ARG 150 
    13596 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 151 
    13597 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y ILE 152 
    13598 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLU 153 
    13599 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLU 154 
    13600 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y SER 155 
    13601 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y LEU 156 
    13602 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Y GLU 158 
    13603 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z MET 1 
    13604 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ARG 2 
    13605 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ASN 3 
    13606 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ARG 4 
    13607 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ILE 5 
    13608 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 6 
    13609 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z THR 7 
    13610 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 8 
    13611 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z THR 9 
    13612 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ILE 11 
    13613 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 12 
    13614 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 13 
    13615 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 15 
    13616 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ILE 17 
    13617 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 18 
    13618 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 19 
    13619 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z TYR 20 
    13620 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ILE 21 
    13621 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ILE 22 
    13622 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 24 
    13623 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ARG 25 
    13624 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z SER 26 
    13625 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z THR 27 
    13626 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LYS 28 
    13627 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 29 
    13628 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z HIS 30 
    13629 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ILE 31 
    13630 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z SER 32 
    13631 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 33 
    13632 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z GLU 36 
    13633 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PRO 37 
    13634 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 38 
    13635 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 39 
    13636 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z CYS 40 
    13637 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 41 
    13638 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ARG 45 
    13639 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z THR 47 
    13640 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 48 
    13641 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z GLU 49 
    13642 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z THR 50 
    13643 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z CYS 51 
    13644 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z SER 53 
    13645 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PHE 55 
    13646 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PRO 56 
    13647 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ILE 57 
    13648 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z THR 58 
    13649 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ASN 59 
    13650 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z SER 60 
    13651 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 61 
    13652 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ILE 62 
    13653 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z THR 63 
    13654 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z THR 64 
    13655 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 65 
    13656 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ILE 66 
    13657 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 67 
    13658 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 68 
    13659 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ILE 70 
    13660 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ILE 71 
    13661 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ILE 72 
    13662 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 73 
    13663 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ILE 75 
    13664 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 76 
    13665 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z THR 79 
    13666 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ARG 80 
    13667 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z MET 82 
    13668 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z GLN 83 
    13669 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z MET 84 
    13670 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ILE 85 
    13671 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PRO 86 
    13672 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ARG 87 
    13673 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PHE 89 
    13674 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z GLN 90 
    13675 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ASN 91 
    13676 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 92 
    13677 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 93 
    13678 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z GLU 94 
    13679 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 95 
    13680 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z MET 96 
    13681 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 97 
    13682 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z GLU 98 
    13683 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PHE 100 
    13684 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z TYR 101 
    13685 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ASN 102 
    13686 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PHE 103 
    13687 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z GLN 105 
    13688 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z SER 106 
    13689 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 107 
    13690 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ASP 108 
    13691 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ARG 109 
    13692 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ARG 110 
    13693 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ASN 111 
    13694 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 112 
    13695 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LYS 114 
    13696 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PHE 115 
    13697 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PHE 116 
    13698 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PRO 117 
    13699 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PHE 118 
    13700 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z CYS 119 
    13701 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z SER 121 
    13702 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PHE 123 
    13703 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PHE 124 
    13704 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PHE 125 
    13705 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ILE 126 
    13706 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 127 
    13707 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 128 
    13708 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z SER 129 
    13709 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ASN 130 
    13710 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 131 
    13711 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ILE 132 
    13712 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 134 
    13713 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 135 
    13714 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PRO 136 
    13715 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 138 
    13716 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z SER 140 
    13717 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ILE 141 
    13718 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 143 
    13719 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z CYS 144 
    13720 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 145 
    13721 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PRO 146 
    13722 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z THR 147 
    13723 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z THR 186 
    13724 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z THR 187 
    13725 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 188 
    13726 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 189 
    13727 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PRO 190 
    13728 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z TYR 191 
    13729 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 192 
    13730 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ARG 193 
    13731 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PRO 195 
    13732 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z SER 196 
    13733 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ASP 198 
    13734 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 199 
    13735 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ASN 200 
    13736 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 201 
    13737 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z THR 202 
    13738 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 203 
    13739 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z TRP 205 
    13740 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 207 
    13741 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ILE 208 
    13742 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z SER 209 
    13743 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 210 
    13744 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 212 
    13745 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ILE 213 
    13746 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z GLN 214 
    13747 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z TYR 215 
    13748 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PHE 216 
    13749 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PHE 218 
    13750 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z GLN 219 
    13751 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 221 
    13752 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 223 
    13753 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z TYR 225 
    13754 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 226 
    13755 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z THR 227 
    13756 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LYS 228 
    13757 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PHE 229 
    13758 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PHE 230 
    13759 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ASN 231 
    13760 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PHE 232 
    13761 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z ARG 233 
    13762 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z GLU 234 
    13763 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PHE 236 
    13764 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z MET 237 
    13765 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 240 
    13766 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z VAL 241 
    13767 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z MET 274 
    13768 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PHE 276 
    13769 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 277 
    13770 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PHE 278 
    13771 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PRO 279 
    13772 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z TYR 280 
    13773 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 281 
    13774 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z LEU 282 
    13775 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PRO 283 
    13776 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PRO 285 
    13777 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z PHE 286 
    13778 J436_state1_synthasis_2.82A_14.82w-coot-3.pdb #1/Z TYR 287 
     1840[deleted to fit within ticket limits]
     1841
    137791842
    137801843Using Amber 20 recommended default charges and atom types for standard