![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 7 months ago
Last modified 7 months ago
#17143 closed defect
ChimeraX bug report submission — at Initial Version
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.3.2-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00000001fe124840 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 818 in delete
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/std_commands/delete.py", line 50 in delete_atoms
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 3213 in run
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/run.py", line 49 in run
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 1428 in
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 330 in event_loop
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1054 in init
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, cython.cimports.libc.math, scipy._lib._ccallback_c, scipy.sparse._sparsetools, _csparsetools, scipy.sparse._csparsetools, scipy.linalg._fblas, scipy.linalg._flapack, scipy.linalg.cython_lapack, scipy.linalg._cythonized_array_utils, scipy.linalg._solve_toeplitz, scipy.linalg._decomp_lu_cython, scipy.linalg._matfuncs_sqrtm_triu, scipy.linalg.cython_blas, scipy.linalg._matfuncs_expm, scipy.linalg._decomp_update, scipy.sparse.linalg._dsolve._superlu, scipy.sparse.linalg._eigen.arpack._arpack, scipy.sparse.linalg._propack._spropack, scipy.sparse.linalg._propack._dpropack, scipy.sparse.linalg._propack._cpropack, scipy.sparse.linalg._propack._zpropack, scipy.sparse.csgraph._tools, scipy.sparse.csgraph._shortest_path, scipy.sparse.csgraph._traversal, scipy.sparse.csgraph._min_spanning_tree, scipy.sparse.csgraph._flow, scipy.sparse.csgraph._matching, scipy.sparse.csgraph._reordering, scipy.spatial._ckdtree, scipy._lib.messagestream, scipy.spatial._qhull, scipy.spatial._voronoi, scipy.spatial._distance_wrap, scipy.spatial._hausdorff, scipy.special._ufuncs_cxx, scipy.special._ufuncs, scipy.special._specfun, scipy.special._comb, scipy.special._ellip_harm_2, scipy.spatial.transform._rotation, markupsafe._speedups, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, openmm._openmm, openmm.app.internal.compiled, chimerax.surface._surface, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, lxml._elementpath, lxml.etree (total: 100)
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{
"uptime" : 100000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "Mac15,3",
"coalitionID" : 2080,
"osVersion" : {
"train" : "macOS 15.3.2",
"build" : "24D81",
"releaseType" : "User"
},
"captureTime" : "2025-03-20 17:20:34.5316 +0800",
"codeSigningMonitor" : 1,
"incident" : "DE0ED329-534D-4808-B9FF-507008BF50C7",
"pid" : 31575,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-03-20 17:19:44.1484 +0800",
"procStartAbsTime" : 2543305012344,
"procExitAbsTime" : 2544513831790,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.9.0","CFBundleVersion":"1.9.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"EA6F46DC-0D49-5252-AADD-9459FD0517EC","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "F197DFDE-47C9-9A85-79E8-078C72A2A357",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRcuD\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkWfg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
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"wakeTime" : 1423,
"sleepWakeUUID" : "D5CB6B22-F3F8-4368-8D14-83C9A672666E",
"sip" : "enabled",
"vmRegionInfo" : "0 is not in any region. Bytes before following region: 4364451840\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 104244000-104248000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000000","rawCodes":[1,0],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000000"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":31575},
"vmregioninfo" : "0 is not in any region. Bytes before following region: 4364451840\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 104244000-104248000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
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===== Log before crash start =====
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/edited/cavity all.cxs"
Opened 275y+21h density as #6, grid size 140,140,140, pixel 1.32, shown at
level 0.0709, step 1, values float32
Populating font family aliases took 123 ms. Replace uses of missing font
family "Times" with one that exists to avoid this cost.
Log from Thu Mar 20 17:02:46 2025UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/edited/All 21h and
> Oseltamivir reference (wt).cxs"
Opened 275y+21h density as #6, grid size 140,140,140, pixel 1.32, shown at
level 0.0709, step 1, values float32
Log from Thu Mar 20 16:03:03 2025UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/edited/All 21h and
> Oseltamivir reference (wt).cxs"
Opened 275y+21h density as #6, grid size 140,140,140, pixel 1.32, shown at
level 0.0709, step 1, values float32
Log from Thu Mar 20 14:14:14 2025UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/edited/All 21h and
> Oseltamivir reference (wt).cxs"
Opened 275y+21h density as #6, grid size 140,140,140, pixel 1.32, shown at
level 0.0709, step 1, values float32
Log from Thu Mar 20 11:56:54 2025UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/edited/1 wt+21h vs
> h275y+21h .cxs"
Opened 275y+21h density as #6, grid size 140,140,140, pixel 1.32, shown at
level 0.0709, step 1, values float32
Log from Tue Mar 18 15:54:31 2025UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/25.3.16-5 275+21h vs
> wt+21h.cxs"
Error opening map "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/25.3.16-5
275+21h vs wt+21h.cxs": File 25.3.16-5 275+21h vs wt+21h.cxs, format mrc
MRC header value nsymbt (875113504) is invalid
restore_snapshot for "Volume" returned None
restore_snapshot for "VolumeSurface" returned None
Opened 275y+21h density as #6, grid size 140,140,140, pixel 1.32, shown at
level 0.0709, step 1, values float32
Log from Sun Mar 16 18:21:34 2025UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "C:/Users/hp/坚果云/科研/研二/TEXAS/建模/25.3.16 画图/25.3.16 -3 wt21h vs
> 2hu4.cxs"
Opened 25.3.14 wt_21h.mrc 21h density as #5, grid size 140,140,140, pixel
1.32, shown at level 0.0894, step 1, values float32
Opened 25.3.14 wt_21h.mrc as #3, grid size 140,140,140, pixel 1.32, shown at
level 0.0922, step 1, values float32
Opened 25.3.14 wt_21h.mrc copy as #7, grid size 140,140,140, pixel 1.32, shown
at step 1, values float32
Log from Sun Mar 16 15:13:15 2025UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15 21h-wt.cxs"
Opened 25.3.14 wt_21h.mrc copy as #5, grid size 140,140,140, pixel 1.32, shown
at level 0.0894, step 1, values float32
Log from Sat Mar 15 15:10:40 2025UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "C:\Users\hp\Desktop\temporary file\25.3.14 refine\25.3.15 21h-wt all
> view.cxs" format session
Log from Sat Mar 15 13:19:14 2025 Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 wt 21h.pdb"
Chain information for 25.3.14 wt 21h.pdb #1
---
Chain | Description
D | No description available
3 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 275Y
> 21h.pdb"
Chain information for 25.3.14 275Y 21h.pdb #2
---
Chain | Description
D | No description available
3 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 275APO.pdb"
Chain information for 25.3.14 275APO.pdb #3
---
Chain | Description
D | No description available
3 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Computing secondary structure
> set bgColor white
> set bgColor #ffffff00
> ui tool show "Command Line Interface"
> lighting full
> lighting soft
> lighting full
> lighting simple
> lighting shadows true
> lighting full
> lighting flat
> graphics silhouettes false
> graphics silhouettes true
> set bgColor gray
> set bgColor #80808000
> set bgColor white
> set bgColor #ffffff00
> view orient
[Repeated 1 time(s)]
> lighting soft
> lighting full
> lighting soft
> lighting flat
> lighting full
> lighting soft
> lighting simple
> lighting soft
> align #1 toAtoms #2
Unequal number of atoms to pair, 3061 and 3063
> matchmaker #2 to #1
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 25.3.14 wt 21h.pdb, chain D (#1) with 25.3.14 275Y 21h.pdb, chain D
(#2), sequence alignment score = 1999.1
RMSD between 387 pruned atom pairs is 0.324 angstroms; (across all 387 pairs:
0.324)
> matchmaker #3 to #1
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 25.3.14 wt 21h.pdb, chain D (#1) with 25.3.14 275APO.pdb, chain D
(#3), sequence alignment score = 1991.6
RMSD between 387 pruned atom pairs is 0.364 angstroms; (across all 387 pairs:
0.364)
> hide #1 models
> hide #2 models
> hide #3 models
> show #3 models
> hide #3 models
> show #1 models
> show #2 models
> show #3 models
> hide #1 models
> hide #3 models
> show #1 models
> close
> close #
Expected a models specifier or a keyword
> open "C:/Users/hp/Desktop/temporary file/25.2.9 274apo/25.2.9
> H5N1-APO-274-TERA.pdb"
Chain information for 25.2.9 H5N1-APO-274-TERA.pdb #1
---
Chain | Description
A B C D | No description available
12 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 wt_21h.mrc"
Opened 25.3.14 wt_21h.mrc as #2, grid size 140,140,140, pixel 1.32, shown at
level 0.15, step 1, values float32
> select add #2
2 models selected
> ui mousemode right "translate selected models"
> view matrix models #2,1,0,0,-0.71014,0,1,0,-1.0647,0,0,1,24.039
> select subtract #2
Nothing selected
> select add #1
12252 atoms, 12632 bonds, 1572 residues, 1 model selected
> view matrix models #1,1,0,0,6.8891,0,1,0,-3.0198,0,0,1,-45.744
> view matrix models #1,1,0,0,2.7469,0,1,0,4.2044,0,0,1,-0.8542
> view matrix models #1,1,0,0,-1.6281,0,1,0,-2.0361,0,0,1,-1.3732
> view matrix models
> #1,0.98817,-0.15334,0.0018364,13.34,0.15333,0.98816,0.0047055,-15.687,-0.0025362,-0.0043683,0.99999,-0.73564
> view matrix models
> #1,0.98817,-0.15334,0.0018364,14.526,0.15333,0.98816,0.0047055,-16.837,-0.0025362,-0.0043683,0.99999,-0.68414
> view matrix models
> #1,0.98979,-0.12595,-0.066777,19.257,0.12603,0.99202,-0.0030002,-13.839,0.066622,-0.0054467,0.99776,-6.7346
> view matrix models
> #1,0.97219,-0.22503,-0.064857,29.824,0.22508,0.97432,-0.0066573,-20.961,0.06469,-0.0081258,0.99787,-6.3204
> fitmap #1 inMap #2
Fit molecule 25.2.9 H5N1-APO-274-TERA.pdb (#1) to map 25.3.14 wt_21h.mrc (#2)
using 12252 atoms
average map value = 0.2203, steps = 72
shifted from previous position = 2.23
rotated from previous position = 4.31 degrees
atoms outside contour = 3838, contour level = 0.15019
Position of 25.2.9 H5N1-APO-274-TERA.pdb (#1) relative to 25.3.14 wt_21h.mrc
(#2) coordinates:
Matrix rotation and translation
0.96521608 -0.26145349 -0.00000313 27.36331187
0.26145349 0.96521608 -0.00001537 -20.92404374
0.00000704 0.00001401 1.00000000 -25.10689376
Axis 0.00005618 -0.00001945 1.00000000
Axis point 92.32202072 92.38125036 0.00000000
Rotation angle (degrees) 15.15632453
Shift along axis -25.10494943
> close #2
> close
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 wt_21h.mrc"
Opened 25.3.14 wt_21h.mrc as #1, grid size 140,140,140, pixel 1.32, shown at
level 0.15, step 1, values float32
> open "C:/Users/hp/Desktop/temporary file/25.2.9 274apo/25.2.9
> H5N1-APO-274-TERA.pdb"
Chain information for 25.2.9 H5N1-APO-274-TERA.pdb #2
---
Chain | Description
A B C D | No description available
12 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> select add #2
12252 atoms, 12632 bonds, 1572 residues, 1 model selected
> view matrix models #2,1,0,0,-8.8859,0,1,0,-9.3602,0,0,1,-15.246
> view matrix models
> #2,0.97173,-0.22891,0.0578,8.6224,0.23233,0.97068,-0.061677,-21.46,-0.041986,0.073362,0.99642,-17.755
> view matrix models
> #2,0.97173,-0.22891,0.0578,16.97,0.23233,0.97068,-0.061677,-11.976,-0.041986,0.073362,0.99642,-22.25
> view matrix models
> #2,0.97173,-0.22891,0.0578,16.533,0.23233,0.97068,-0.061677,-12.322,-0.041986,0.073362,0.99642,-26.135
> fitmap #2 inMap #1
Fit molecule 25.2.9 H5N1-APO-274-TERA.pdb (#2) to map 25.3.14 wt_21h.mrc (#1)
using 12252 atoms
average map value = 0.2203, steps = 64
shifted from previous position = 1.78
rotated from previous position = 5.18 degrees
atoms outside contour = 3843, contour level = 0.15019
Position of 25.2.9 H5N1-APO-274-TERA.pdb (#2) relative to 25.3.14 wt_21h.mrc
(#1) coordinates:
Matrix rotation and translation
0.96509004 -0.26191833 -0.00004220 27.42736600
0.26191833 0.96509004 -0.00001683 -20.96803728
0.00004513 0.00000519 1.00000000 -25.10722655
Axis 0.00004204 -0.00016671 0.99999999
Axis point 92.38817006 92.40725382 0.00000000
Rotation angle (degrees) 15.18392000
Shift along axis -25.10257762
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.2.9 tert
> apo274.pdb"
> close
> open "C:/Users/hp/Desktop/temporary file/25.2.9 274apo/25.2.9
> H5N1-APO-274-TERA.pdb"
Chain information for 25.2.9 H5N1-APO-274-TERA.pdb #1
---
Chain | Description
A B C D | No description available
12 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> close
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 tert
> 275apo.pdb"
Chain information for 25.3.14 tert 275apo.pdb #1
---
Chain | Description
A B C D | No description available
12 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> nucleotides atoms
> style nucleic stick
Changed 0 atom styles
> nucleotides fill
> style nucleic stick
Changed 0 atom styles
> nucleotides slab
> style nucleic stick
Changed 0 atom styles
> nucleotides atoms
> style nucleic stick
Changed 0 atom styles
> close
> open C:/Users/hp/Downloads/h52G5oo.pdb
Summary of feedback from opening C:/Users/hp/Downloads/h52G5oo.pdb
---
warnings | End residue of secondary structure not found: SHEET 3 3 1 ILE D 122 UNK D 124 0
Start residue of secondary structure not found: SHEET 4 4 1 UNK D 129 LEU D
139 0
Chain information for h52G5oo.pdb #1
---
Chain | Description
A B C D | No description available
12 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> ui tool show "Color Actions"
> color bychain
> select ::name="21H"
136 atoms, 144 bonds, 4 residues, 1 model selected
> color sel byhetero
> ui tool show "Color Actions"
> color sel red
> color sel byhetero
> color sel yellow
> color sel byhetero
> color sel gold
> color sel crimson
> color sel orange red
> color sel yellow green
> color sel olive
> color sel chartreuse
> color sel spring green
> color sel saddle brown
> color sel maroon
> color sel yellow
> color sel byhetero
> view matrix models #1,1,0,0,-0.10137,0,1,0,0.016025,0,0,1,0.010116
> select clear
> lighting simple
> lighting soft
> hide atoms
> select ::name="21H"
136 atoms, 144 bonds, 4 residues, 1 model selected
> show sel atoms
> select clear
> lighting flat
> lighting full
> lighting simple
> lighting soft
> lighting shadows true intensity 0.5
> lighting soft
> graphics silhouettes false
> graphics silhouettes true
> view
> volume region all imageMode "full region"
No volumes specified
> view orient
> save C:\Users\hp/Desktop\image1.png supersample 3
> show target m
> view clip false
> select /C
3061 atoms, 3145 bonds, 393 residues, 1 model selected
> select ~sel & ##selected
9183 atoms, 9445 bonds, 1179 residues, 1 model selected
> hide target m
[Repeated 1 time(s)]
> close
> open C:\Users\hp\Downloads\h52G5oo.pdb format pdb
Summary of feedback from opening C:\Users\hp\Downloads\h52G5oo.pdb
---
warnings | End residue of secondary structure not found: SHEET 3 3 1 ILE D 122 UNK D 124 0
Start residue of secondary structure not found: SHEET 4 4 1 UNK D 129 LEU D
139 0
Chain information for h52G5oo.pdb #1
---
Chain | Description
A B C D | No description available
12 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> undo
[Repeated 2 time(s)]Undo failed, probably because structures have been
modified.
> hide atoms
> ui tool show "Color Actions"
> color bychain
> select ::name="21H"
136 atoms, 144 bonds, 4 residues, 1 model selected
> color sel yellow
> show sel atoms
> color sel byhetero
> view orient
> lighting soft
> select clear
> save C:\Users\hp/Desktop\image2.png supersample 3
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15 21h-wt all
> view.cxs"
——— End of log from Sat Mar 15 13:19:14 2025 ———
opened ChimeraX session
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 wt 21h.pdb"
Chain information for 25.3.14 wt 21h.pdb #2
---
Chain | Description
D | No description available
3 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> select #2/D
3061 atoms, 3155 bonds, 393 residues, 1 model selected
> color sel forest green
> ui tool show "Color Actions"
> color sel chartreuse
> color sel green
> color sel lime
> color sel spring green
> color sel lime green
> color sel medium sea green
> color sel sea green
> color sel olive drab
> color sel dark turquoise
> color sel medium spring green
> color sel dodger blue
> color sel turquoise
> color sel medium turquoise
> color sel light sea green
> color sel cornflower blue
> color sel dark cyan
> color sel medium aquamarine
> color sel teal
> color sel steel blue
> color sel cadet blue
> color sel light slate gray
> color sel slate gray
> color sel dark slate gray
> color sel midnight blue
> color sel hot pink
> color sel orange
> color sel orange red
> color sel red
> color sel yellow green
> color sel dark goldenrod
> color sel medium spring green
> color sel byelement
[Repeated 1 time(s)]
> color sel bychain
> color sel dark turquoise
> color sel medium spring green
> color sel dodger blue
> color sel medium turquoise
> color sel cornflower blue
> color sel light sea green
> color sel byelement
> color sel byhetero
> color sel bychain
> hide #1 models
> hide sel atoms
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> hide sel & #2 atoms
> show sel & #2 atoms
> color (#2 & sel) yellow
> color (#2 & sel) byhetero
> select add #1
12278 atoms, 12626 bonds, 1573 residues, 2 models selected
> select subtract #1
34 atoms, 36 bonds, 1 residue, 1 model selected
> select clear
> lighting full
> lighting soft
> lighting simple
> lighting flat
> lighting shadows true intensity 0.5
> lighting full
> lighting shadows false
> lighting shadows true
> lighting shadows false
> graphics silhouettes false
> graphics silhouettes true
> lighting soft
> lighting simple
> lighting soft
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 wt_21h.mrc"
Opened 25.3.14 wt_21h.mrc as #3, grid size 140,140,140, pixel 1.32, shown at
level 0.15, step 1, values float32
> volume #3 level 0.06894
> volume #3 style mesh
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> volume zone #1 centerSelected true radius 5
Expected a keyword
> volume zone #3 centerSelected true radius 5
Expected a keyword
> volume zone #3 nearAtoms sel & #2 range 7.92
> volume #3 level 0.0931
> color zone #3 near sel & #2 distance 7.92
> undo
> surface dust #3 size 13.2
> undo
[Repeated 1 time(s)]
> volume zone #3 nearAtoms sel & #2 range 7.92
> volume #3 orthoplanes xyz positionPlanes 70,70,70 style image region all
> mousemode rightMode "move planes"
> undo
> volume zone #3 nearAtoms sel & #2 range 7.92
> undo
[Repeated 1 time(s)]
> volume planes z style image imageMode "full region"
> mousemode rightMode "move planes"
> volume region all imageMode "full region"
> volume unzone
> mousemode rightMode "crop volume"
> undo
[Repeated 2 time(s)]
> volume style surface
> volume style mesh
> redo
[Repeated 4 time(s)]
> volume zone #3 nearAtoms sel & #2 range 7.92
> volume #3 region 0,0,0,139,136,139
> volume showOutlineBox false
> volume zone #3 nearAtoms sel & #2 range 5
> volume #3 change image level -0.0124,0 level 0.1501,0.8 level 0.7728,1
> volume #3 level 0.07773
> volume zone #3 nearAtoms sel & #2 range 3
> volume zone #3 nearAtoms sel & #2 range 2
> volume zone #3 nearAtoms sel & #2 range 2.5
> volume zone #3 nearAtoms sel & #2 range 2.3
> volume zone #3 nearAtoms sel & #2 range 2.4
> vop gaussian #3 sdev 3.96
Opened 25.3.14 wt_21h.mrc gaussian as #4, grid size 140,140,140, pixel 1.32,
shown at step 1, values float32
> undo
> volume zone #3 nearAtoms sel & #2 range 2.4
> volume #!4 region all imageMode "full region"
> volume unzone #!4
> mousemode rightMode "crop volume"
> volume zone #4 nearAtoms sel & #2 range 7.92
> volume #!4 style surface
> volume #!4 style mesh
> volume #4 region 0,0,0,139,139,139
> close #4
> show #!3 models
> volume zone #3 nearAtoms sel & #2 range 2.4
> volume zone #3 nearAtoms sel & #2 range 2.5
> volume zone #3 nearAtoms sel & #2 range 2.3
> volume zone #3 nearAtoms sel & #2 range 2.5
> volume zone #3 nearAtoms sel & #2 range 2.6
> volume #3 step 2
> volume #3 step 1
> transparency 50
> volume style mesh
> volume style image
> volume style mesh
> volume style surface
> volume style mesh
> volume hide
> volume show
> volume region all imageMode "full region"
> volume unzone
> mousemode rightMode "crop volume"
> volume show
> volume hide
> volume show
> volume zone #3 nearAtoms sel & #2 range 7.92
> volume zone #3 nearAtoms sel & #2 range 2.6
> volume style surface
> volume style mesh
> volume #3 level 0.1293
> volume zone #3 nearAtoms sel & #2 range 2.6
> volume zone #3 nearAtoms sel & #2 range 2.5
> volume zone #3 nearAtoms sel & #2 range 2.3
> volume zone #3 nearAtoms sel & #2 range 2
> volume style surface
> select clear
> volume zone #3 nearAtoms sel & #2 range 2.3
no atoms specified for zone
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> volume zone #3 nearAtoms sel & #2 range 2.3
> volume zone #3 nearAtoms sel & #2 range 2.5
> volume zone #3 nearAtoms sel & #2 range 2.6
> volume zone #3 nearAtoms sel & #2 range 2.7
> volume zone #3 nearAtoms sel & #2 range 3
> ui tool show "Volume Viewer"
> ui mousemode right "map eraser"
> volume erase #3 center 61.064,98.558,92.625 radius 2.6964
Opened 25.3.14 wt_21h.mrc copy as #5, grid size 140,140,140, pixel 1.32, shown
at step 1, values float32
> hide #!5 models
> hide #4 models
> show #4 models
> show #!3 models
> show #!5 models
Can only have one displayed volume when erasing
> hide #!3 models
> hide #4 models
> show #4 models
> volume erase #5 center 55.434,101.74,92.709 radius 2.6796 outside true
> undo
[Repeated 1 time(s)]
> hide #!5 models
> show #!3 models
> volume copy #3 subregion 43,72,69,48,77,74
Opened 25.3.14 wt_21h.mrc copy as #6, grid size 6,6,6, pixel 1.32, shown at
step 1, values float32
> undo
> close #6
> show #!5 models
> close #5
> show #!3 models
> volume erase #3 center 61.457,99.29,91.494 radius 2.5872
Opened 25.3.14 wt_21h.mrc copy as #5, grid size 140,140,140, pixel 1.32, shown
at step 1, values float32
> hide #!5 models
> show #!3 models
> select add #3
170 atoms, 180 bonds, 5 residues, 5 models selected
> select add #3
170 atoms, 180 bonds, 5 residues, 5 models selected
> select add #3
170 atoms, 180 bonds, 5 residues, 5 models selected
> select add #2
3197 atoms, 3299 bonds, 397 residues, 5 models selected
> select add #3
3197 atoms, 3299 bonds, 397 residues, 5 models selected
> select subtract #2
136 atoms, 144 bonds, 4 residues, 4 models selected
> select add #3
136 atoms, 144 bonds, 4 residues, 4 models selected
> show #!5 models
> select clear
Can only have one displayed volume when erasing
> hide #!3 models
> volume erase #5 center 51.528,102.57,89.589 radius 2.5872
> hide #!5 models
> show #!3 models
> volume erase #3 center 60.316,99.236,88.608 radius 2.5872
Opened 25.3.14 wt_21h.mrc copy as #6, grid size 140,140,140, pixel 1.32, shown
at step 1, values float32
> hide #!6 models
> show #!6 models
> close #5-6
> show #!3 models
> hide #4 models
> show #4 models
> hide #!3 models
> show #!3 models
> volume zone #3 nearAtoms sel & #2 range 2.7
no atoms specified for zone
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> volume zone #3 nearAtoms sel & #2 range 5
> volume #3 level 0.09062
> close #4
> ui mousemode right "map eraser"
> volume erase #3 center 61.446,97.572,81.679 radius 2.587
Opened 25.3.14 wt_21h.mrc copy as #5, grid size 140,140,140, pixel 1.32, shown
at step 1, values float32
> volume erase #5 center 61.446,97.572,81.679 radius 2.587
> volume erase #5 center 62.975,102.89,92.894 radius 2.587 outside true
> volume erase #5 center 62.975,102.89,92.894 radius 5.9136 outside true
> volume copy #5 subregion 36,74,59,46,84,69
Opened 25.3.14 wt_21h.mrc copy as #6, grid size 11,11,11, pixel 1.32, shown at
step 1, values float32
> close #6
> close #5
> show #!3 models
> ui mousemode right "pick blobs"
> measure blob #!3.1 triangleNumber 122911 color #0000ccff outline true
Surface 25.3.14 wt_21h.mrc #3.1 blob:
volume = 86966
area = 1.0243e+05
size = 107.18 107.18 66.96
> hide #!3 models
> show #!3 models
> hide #!3 target m
> close #3
> close #4
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 wt_21h.mrc"
Opened 25.3.14 wt_21h.mrc as #3, grid size 140,140,140, pixel 1.32, shown at
level 0.15, step 1, values float32
> volume #3 level 0.09218
> volume zone #3 nearAtoms sel & #2 range 5
> ui mousemode right "map eraser"
> volume erase #3 center 65.186,103.07,92.398 radius 9.9792 outside true
Opened 25.3.14 wt_21h.mrc copy as #5, grid size 140,140,140, pixel 1.32, shown
at step 1, values float32
> volume erase #5 center 60.525,96.343,91.916 radius 3.8808
> volume erase #5 center 55.484,102.75,91.722 radius 2.9568
> volume erase #5 center 58.525,100.41,96.734 radius 2.9568
> volume erase #5 center 62.237,108.25,100.02 radius 2.9568
> volume erase #5 center 57.521,99.772,90.463 radius 2.9568
> volume erase #5 center 66.263,94.957,88.061 radius 7.2072
> volume erase #5 center 61.286,98.365,82.255 radius 8.4084
> volume #3 level 0.1223
> volume #5 level 0.08021
> hide #!3 models
> hide #!5 models
> show #!3 models
> volume erase #3 center 61.286,98.365,82.255 radius 8.4084
Opened 25.3.14 wt_21h.mrc copy as #6, grid size 140,140,140, pixel 1.32, shown
at step 1, values float32
> close #6
> show #!5 models
> volume #5 level 0.09047
> volume erase #5 center 62.602,108.27,84.121 radius 4.0656
> volume erase #5 center 59.315,109.9,85.976 radius 4.0656
> volume #5 level 0.1007
> volume erase #5 center 69.232,108.52,96.691 radius 4.0656
> volume erase #5 center 67.403,105.5,98.516 radius 4.0656
> volume erase #5 center 68.509,97.638,98.61 radius 4.0656
> volume #5 level 0.05455
> volume #5 level 0.09047
> volume erase #5 center 60.767,97.947,97.969 radius 4.0656
> volume #5 style mesh
> volume #5 style image
> volume #5 style surface
> volume erase #5 center 65.772,112.15,94.619 radius 4.0656
> volume erase #5 center 62.908,113.75,90.217 radius 4.0656
> volume erase #5 center 69.913,109.49,86.52 radius 4.0656
> volume erase #5 center 70.694,109.41,91.18 radius 4.0656
> volume erase #5 center 69.266,110.31,90.464 radius 4.0656
> volume erase #5 center 69.468,104.14,85.347 radius 4.0656
> volume erase #5 center 73.641,101.75,87.342 radius 4.0656
> volume erase #5 center 71.502,97.007,92.743 radius 3.696
> volume erase #5 center 67.169,98.522,91.44 radius 3.696
> volume erase #5 center 74.962,107.11,93.794 radius 3.696
> volume erase #5 center 67.306,112.06,85.746 radius 3.696
> volume erase #5 center 72.403,107.84,87.289 radius 3.696
> volume erase #5 center 55.617,110.08,90.885 radius 3.696
> volume erase #5 center 57.444,110.11,95.639 radius 3.696
> hide #!5 models
> show #!5 models
> hide #4 models
> volume #5 style mesh
> close #3
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15 21h-wt.cxs"
> volume #5 color cyan
> volume #5 color #00aaff
[Repeated 1 time(s)]
> volume #5 color #0055ff
> volume #5 color #00aaff
> lighting flat
> lighting full
> lighting soft
> lighting simple
> lighting soft
> volume #5 level 0.09047
> volume #5 level 0.08936
> ui mousemode right "map eraser"
> volume erase #5 center 64.232,93.834,94.963 radius 1.0167
> volume erase #5 center 64.721,108.19,93.473 radius 1.0167
> volume erase #5 center 68.835,101.83,89.468 radius 1.0167
> lighting shadows true intensity 0.5
> lighting flat
> lighting simple
> lighting full
[Repeated 1 time(s)]
> lighting simple
> lighting soft
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> ui tool show "Color Actions"
> color sel gold
> color sel dark goldenrod
> color sel peru
> color sel dark salmon
> color sel green
> color sel orange
> color sel light sea green
> color sel cornflower blue
> color sel purple
> color sel green yellow
> color sel sandy brown
> color sel indian red
> color sel dark red
> color sel orange red
[Repeated 1 time(s)]
> color sel orange
> color sel lime
> color sel forest green
> color sel light sea green
> color sel blue
> color sel cornflower blue
> color sel purple
> color sel magenta
> color sel white
> color sel gray
> color sel dim gray
> color sel black
> color sel peru
> color sel yellow green
> color sel dark turquoise
> color sel turquoise
> color sel dark cyan
> color sel steel blue
> color sel light slate gray
> color sel indian red
> color sel yellow
> color sel dark red
> color sel orange
> color sel gold
> color sel goldenrod
> color sel sandy brown
> color sel dark orange
> color sel orange
> color sel olive
> color sel salmon
> color sel dark khaki
> color sel peru
> color sel light salmon
> color sel salmon
> color sel lime green
> color sel lime
> color sel olive
> color sel dark salmon
> color sel salmon
> color sel light salmon
> color sel salmon
> color sel dark turquoise
> color sel medium spring green
> color sel medium turquoise
> color sel dark blue
> color sel indigo
> color sel royal blue
> color sel rebecca purple
> color sel slate blue
> color sel medium orchid
> color sel purple
> color sel salmon
[Repeated 1 time(s)]
> color sel byhetero
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15 21h-wt.cxs"
> nucleotides sel & #2 atoms
> style nucleic & sel & #2 stick
Changed 0 atom styles
> nucleotides sel & #2 fill
> style nucleic & sel & #2 stick
Changed 0 atom styles
> ui tool show "Side View"
> select clear
> color #5 #0055ffff models
> color #5 blue models
> color #5 #0055ffff models
> color #5 #5555ffff models
> color #5 #0055ffff models
[Repeated 2 time(s)]
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15 21h-wt.cxs"
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A #1/B #1/C #1/D #2/D
Alignment identifier is 1
> select #1/A-D:343 #2/D:343
25 atoms, 20 bonds, 5 residues, 2 models selected
> select #1/A-D:343 #2/D:343
25 atoms, 20 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [262] RMSD: 0.090
> hide #2 models
> show #2 models
> hide #!5 models
> show #!5 models
> select #1/A-D:108 #2/D:108
40 atoms, 35 bonds, 5 residues, 2 models selected
> select #1/A-D:103-108 #2/D:103-108
235 atoms, 230 bonds, 30 residues, 2 models selected
1 [ID: 1] region 5 chains [22-27] RMSD: 0.101
> select #1/A-D:119 #2/D:119
45 atoms, 40 bonds, 5 residues, 2 models selected
> select #1/A-D:119 #2/D:119
45 atoms, 40 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [38] RMSD: 0.083
> show sel & #2 atoms
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> select ~sel & ##selected
15135 atoms, 15565 bonds, 1960 residues, 2 models selected
> color (#2 & sel) byhetero
> select clear
> select #1/A-D:119 #2/D:119
45 atoms, 40 bonds, 5 residues, 2 models selected
> select #1/A-D:119 #2/D:119
45 atoms, 40 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [38] RMSD: 0.083
> select #1/A-D:228 #2/D:228
45 atoms, 40 bonds, 5 residues, 2 models selected
> select #1/A-D:228 #2/D:228
45 atoms, 40 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [147] RMSD: 0.074
> show sel & #2 atoms
> select #1/A-D:118 #2/D:118
55 atoms, 50 bonds, 5 residues, 2 models selected
> select #1/A-D:118 #2/D:118
55 atoms, 50 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [37] RMSD: 0.083
> select #1/A-D:138 #2/D:138
25 atoms, 20 bonds, 5 residues, 2 models selected
> select #1/A-D:138 #2/D:138
25 atoms, 20 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [57] RMSD: 0.081
> select #1/A-D:118 #2/D:118
55 atoms, 50 bonds, 5 residues, 2 models selected
> select #1/A-D:118 #2/D:118
55 atoms, 50 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [37] RMSD: 0.083
> show sel & #2 atoms
> select #1/A-D:368 #2/D:368
55 atoms, 50 bonds, 5 residues, 2 models selected
> select #1/A-D:368 #2/D:368
55 atoms, 50 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [287] RMSD: 0.099
> show sel & #2 atoms
> select #1/A-D:293 #2/D:293
55 atoms, 50 bonds, 5 residues, 2 models selected
> select #1/A-D:293 #2/D:293
55 atoms, 50 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [212] RMSD: 0.083
> show sel & #2 atoms
> select #1/A-D:152-153 #2/D:152-153
85 atoms, 80 bonds, 10 residues, 2 models selected
> select #1/A-D:152-153 #2/D:152-153
85 atoms, 80 bonds, 10 residues, 2 models selected
1 [ID: 1] region 5 chains [71-72] RMSD: 0.068
> select #1/A-D:152 #2/D:152
55 atoms, 50 bonds, 5 residues, 2 models selected
> select #1/A-D:152 #2/D:152
55 atoms, 50 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [71] RMSD: 0.069
> show sel & #2 atoms
> select #1/A-D:230 #2/D:230
45 atoms, 40 bonds, 5 residues, 2 models selected
> select #1/A-D:230 #2/D:230
45 atoms, 40 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [149] RMSD: 0.074
> select #1/A-D:278 #2/D:278
45 atoms, 40 bonds, 5 residues, 2 models selected
> select #1/A-D:278-279 #2/D:278-279
75 atoms, 70 bonds, 10 residues, 2 models selected
1 [ID: 1] region 5 chains [197-198] RMSD: 0.076
> select
> #1/A-D:96-102,115-118,121-124,129-139,157-162,173-177,180-185,190-196,203-208,211-217,224-225,232-234,237-245,251-259,262-269,277-284,287-293,302-306,313-316,349-353,356-361,369-376,392-399,403-408,419-429,438-448
> #2/D:96-102,115-118,121-124,129-139,157-162,173-177,180-185,190-196,203-208,211-217,224-225,232-234,237-245,251-259,262-269,277-284,287-293,302-306,313-316,349-353,356-361,369-376,392-399,403-408,419-429,438-448
6870 atoms, 6945 bonds, 865 residues, 2 models selected
> select #1/A-D:278 #2/D:278
45 atoms, 40 bonds, 5 residues, 2 models selected
> select #1/A-D:278 #2/D:278
45 atoms, 40 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [197] RMSD: 0.076
> select #1/A-D:277 #2/D:277
45 atoms, 40 bonds, 5 residues, 2 models selected
> select #1/A-D:277 #2/D:277
45 atoms, 40 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [196] RMSD: 0.075
> show sel & #2 atoms
> select #1/A-D:134 #2/D:134
40 atoms, 35 bonds, 5 residues, 2 models selected
> select #1/A-D:134 #2/D:134
40 atoms, 35 bonds, 5 residues, 2 models selected
> select #1/A-D:134 #2/D:134
40 atoms, 35 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [53] RMSD: 0.077
> select #1/A-D:127 #2/D:127
40 atoms, 35 bonds, 5 residues, 2 models selected
> select #1/A-D:127 #2/D:127
40 atoms, 35 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [46] RMSD: 0.084
> select #1/A-D:134 #2/D:134
40 atoms, 35 bonds, 5 residues, 2 models selected
> select #1/A-D:134 #2/D:134
40 atoms, 35 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [53] RMSD: 0.077
> select #1/A-D:140-141 #2/D:140-141
80 atoms, 75 bonds, 10 residues, 2 models selected
> select #1/A-D:140-141 #2/D:140-141
80 atoms, 75 bonds, 10 residues, 2 models selected
1 [ID: 1] region 5 chains [59-60] RMSD: 0.093
> select
> #1/A-D:96-102,115-118,121-124,129-139,157-162,173-177,180-185,190-196,203-208,211-217,224-225,232-234,237-245,251-259,262-269,277-284,287-293,302-306,313-316,349-353,356-361,369-376,392-399,403-408,419-429,438-448
> #2/D:96-102,115-118,121-124,129-139,157-162,173-177,180-185,190-196,203-208,211-217,224-225,232-234,237-245,251-259,262-269,277-284,287-293,302-306,313-316,349-353,356-361,369-376,392-399,403-408,419-429,438-448
6870 atoms, 6945 bonds, 865 residues, 2 models selected
> select #1/A-D:140-141 #2/D:140-141
80 atoms, 75 bonds, 10 residues, 2 models selected
> select #1/A-D:140 #2/D:140
40 atoms, 35 bonds, 5 residues, 2 models selected
> select #1/A-D:140 #2/D:140
40 atoms, 35 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [59] RMSD: 0.092
> select #1/A-D:127 #2/D:127
40 atoms, 35 bonds, 5 residues, 2 models selected
> select #1/A-D:127 #2/D:127
40 atoms, 35 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [46] RMSD: 0.084
> select #1/A-D:134 #2/D:134
40 atoms, 35 bonds, 5 residues, 2 models selected
> select #1/A-D:134 #2/D:134
40 atoms, 35 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [53] RMSD: 0.077
> show sel & #2 atoms
> select #1/A-D:151 #2/D:151
40 atoms, 35 bonds, 5 residues, 2 models selected
> select #1/A-D:151 #2/D:151
40 atoms, 35 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [70] RMSD: 0.074
> show sel & #2 atoms
> select #1/A-D:130 #2/D:130
55 atoms, 50 bonds, 5 residues, 2 models selected
> select #1/A-D:130 #2/D:130
55 atoms, 50 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [49] RMSD: 0.083
> select #1/A-D:136 #2/D:136
45 atoms, 40 bonds, 5 residues, 2 models selected
> select #1/A-D:136 #2/D:136
45 atoms, 40 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [55] RMSD: 0.076
> show sel & #2 atoms
> select #1/A-D:156 #2/D:156
55 atoms, 50 bonds, 5 residues, 2 models selected
> select #1/A-D:156 #2/D:156
55 atoms, 50 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [75] RMSD: 0.071
> show sel & #2 atoms
> select #1/A-D:275 #2/D:275
50 atoms, 50 bonds, 5 residues, 2 models selected
> select #1/A-D:275 #2/D:275
50 atoms, 50 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [194] RMSD: 0.077
> show sel & #2 atoms
> select #1/A-D:274 #2/D:274
60 atoms, 60 bonds, 5 residues, 2 models selected
> select #1/A-D:274 #2/D:274
60 atoms, 60 bonds, 5 residues, 2 models selected
> select #1/A-D:274-276 #2/D:274-276
170 atoms, 180 bonds, 15 residues, 2 models selected
1 [ID: 1] region 5 chains [193-195] RMSD: 0.077
> select clear
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15 21h-wt.cxs"
> view
> view name 1_initial
> view list
Named views: 1_initial
> view 1_initial
> lighting shadows true intensity 0.1
> lighting multiShadow 100
> graphics silhouettes true width 3
> graphics silhouettes true width 2
> view 1_initial
> graphics silhouettes true width 1
> graphics silhouettes true width 1.5
> transparency 70 target c
> transparency 30 target c
> transparency 20 target c
> lighting full
> lighting soft
> lighting flat
> lighting full
> lighting shadows false
> lighting shadows true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> lighting full
> lighting flat
> lighting full
> lighting soft
> lighting simple
[Repeated 1 time(s)]
> lighting full
> lighting flat
> lighting full
> lighting simple
> lighting soft
> lighting simple
> lighting soft
> lighting simple
> lighting full
> lighting simple
> lighting full
> transparency 30 target c
> transparency 50 target c
> view 1_initial
> view name 2_initial
> ui windowfill toggle
[Repeated 1 time(s)]
> view 1_initial
> view 2_initial
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15 21h-wt.cxs"
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> select ~sel & ##selected
15135 atoms, 15565 bonds, 1960 residues, 2 models selected
> color pale violet red target c
> color gold target a
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> color (#2 & sel) cyan
> ui tool show "Color Actions"
> color (sel) byhetero
> lighting flat
> lighting full
> lighting soft
> lighting full
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> select ~sel & ##selected
15135 atoms, 15565 bonds, 1960 residues, 2 models selected
> color (#2 & sel) byhetero
> select clear
> cartoon style width 1.0
> lighting flat
> lighting full
> lighting soft
> lighting simple
> lighting flat
> lighting full
> lighting soft
> lighting simple
> lighting soft
> lighting multiShadow 512
> lighting soft
> lighting full
> color #5 cyan models
> color #5 #0055ffff models
> color #5 #5555ffff models
> color #5 #55aaffff models
> color #5 #00aaffff models
> color #5 #aaaaffff models
> volume style #5 meshWidth 3
Invalid "style" argument: Should be one of 'image', 'mesh', 'solid', or
'surface'
> volume smoothLines true
> volume smoothLines false
> volume name 3_initial
Expected keyword "nameAppearance" or "nameForget"
> view name 3_initial
> view name 2_initial
[Repeated 1 time(s)]
> view 2_initial
> view 1_initial
> view 3_initial
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15 21h-wt.cxs"
> view 3_initial
> hide #!5 models
> log metadata #2
The model has no metadata
> log chains #2
Chain information for 25.3.14 wt 21h.pdb #2
---
Chain | Description
D | No description available
> ui mousemode right distance
> distance #2/D:368@NH2 #2/D:481@O2
Distance between 25.3.14 wt 21h.pdb #2/D ARG 368 NH2 and 21H 481 O2: 3.509Å
> ~distance #2/D:368@NH2 #2/D:481@O2
> distance #2/D:293@NH2 #2/D:368@NH2
Distance between 25.3.14 wt 21h.pdb #2/D ARG 293 NH2 and ARG 368 NH2: 4.486Å
> undo
[Repeated 1 time(s)]
> distance #2/D:368@NH2 #2/D:481@O2
Distance between 25.3.14 wt 21h.pdb #2/D ARG 368 NH2 and 21H 481 O2: 3.509Å
> hide #3.1 models
> show #3.1 models
> hide #!3 models
> show #!3 models
> close #3
> hide #!5 models
> distance #2/D:293@NH1 #2/D:481@O2
Distance between 25.3.14 wt 21h.pdb #2/D ARG 293 NH1 and 21H 481 O2: 4.362Å
> distance #2/D:293@NH2 #2/D:481@O2
Distance between 25.3.14 wt 21h.pdb #2/D ARG 293 NH2 and 21H 481 O2: 4.710Å
> distance #2/D:118@NH2 #2/D:481@O2
Distance between 25.3.14 wt 21h.pdb #2/D ARG 118 NH2 and 21H 481 O2: 4.570Å
> distance #2/D:368@NH2 #2/D:481@O2
Distance between 25.3.14 wt 21h.pdb #2/D ARG 368 NH2 and 21H 481 O2: 3.509Å
> hide #3.1 models
> hide #!3 models
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> hbonds sel & #2 reveal true
8 hydrogen bonds found
> undo
[Repeated 2 time(s)]
> select #1/A-D:402 #2/D:402
60 atoms, 60 bonds, 5 residues, 2 models selected
> select #1/A-D:402 #2/D:402
60 atoms, 60 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [321] RMSD: 0.088
> hide sel & #2 atoms
> hide #4 models
> show #4 models
> hide #4 models
> hide #3.1 models
> hide #!3 models
> close #3
> show #4 models
> distance #2/D:228@OE2 #2/D:481@N1
Distance between 25.3.14 wt 21h.pdb #2/D GLU 228 OE2 and 21H 481 N1: 2.819Å
> distance #2/D:119@OE1 #2/D:481@N1
Distance between 25.3.14 wt 21h.pdb #2/D GLU 119 OE1 and 21H 481 N1: 2.688Å
> close #3
> hide #4 models
> select clear
> view 3_initial
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> select ~sel & ##selected
15135 atoms, 15565 bonds, 8 pseudobonds, 1960 residues, 3 models selected
> show sel & #2 surfaces
> select clear
> view 3_initial
> mlp #!2
Map values for surface "25.3.14 wt 21h.pdb_D SES surface": minimum -29.2, mean
-5.308, maximum 23.58
To also show corresponding color key, enter the above mlp command and add key
true
> lighting soft
> lighting flat
> lighting simple
> show #!2 cartoons
> hide #!2 surfaces
> view 3_initial
> coulombic #!2
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for 25.3.14 wt 21h.pdb_D SES surface #2.1: minimum, -21.34,
mean -2.62, maximum 9.95
To also show corresponding color key, enter the above coulombic command and
add key true
> view 3_initial
> hide #!2 surfaces
> color bfactor #!2
3061 atoms, 393 residues, 1 surfaces, atom bfactor range 39.1 to 87.1
> hide #!2 cartoons
> show #!2 cartoons
> color bfactor #!2
3061 atoms, 393 residues, 1 surfaces, atom bfactor range 39.1 to 87.1
> undo
[Repeated 3 time(s)]
> view 3_initial
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> select ~sel & ##selected
15135 atoms, 15565 bonds, 8 pseudobonds, 1960 residues, 3 models selected
> color pale violet red target a
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> color (#!2 & sel) light sea green
> color (#!2 & sel) #ffff00ff
> color (#!2 & sel) #fdfd00ff
> color (#!2 & sel) #fafa00ff
> color (#!2 & sel) #eaea00ff
> color (#!2 & sel) #dede00ff
> color (#!2 & sel) #d8d800ff
> color (#!2 & sel) #d3d300ff
> color (#!2 & sel) #cccc00ff
> color (#!2 & sel) #c8c800ff
> color (#!2 & sel) #c5c500ff
> color (#!2 & sel) #c2c200ff
> color (#!2 & sel) #c1c100ff
> color (#!2 & sel) #bfbf00ff
> color (#!2 & sel) #bebe00ff
> color (#!2 & sel) #bdbd00ff
> color (#!2 & sel) #bcbc00ff
> color (#!2 & sel) #baba00ff
> color (#!2 & sel) #b9b900ff
> color (#!2 & sel) #b6b600ff
> color (#!2 & sel) #b5b500ff
> color (#!2 & sel) #b4b400ff
> color (#!2 & sel) #b3b300ff
> color (#!2 & sel) #b1b100ff
> color (#!2 & sel) #b0b000ff
> color (#!2 & sel) #b1b100ff
> color (#!2 & sel) #b4b400ff
> color (#!2 & sel) #b5b500ff
> color (#!2 & sel) #b8b800ff
> color (#!2 & sel) #baba00ff
> color (#!2 & sel) #bcbc00ff
> color (#!2 & sel) #bdbd00ff
> color (#!2 & sel) #c2c200ff
> color (#!2 & sel) #c5c500ff
> color (#!2 & sel) #c6c600ff
> color (#!2 & sel) #c8c800ff
> color (#!2 & sel) #c7c700ff
> color (#!2 & sel) #c2c200ff
> color (#!2 & sel) #bdbd00ff
> color (#!2 & sel) #bcbc00ff
> color (#!2 & sel) #baba00ff
> color (#!2 & sel) #b9b900ff
> color (#!2 & sel) #b5b500ff
> color (#!2 & sel) #b4b400ff
> color (#!2 & sel) byhetero
> select ~sel & ##selected
15135 atoms, 15565 bonds, 8 pseudobonds, 1960 residues, 3 models selected
> color (#!2 & sel) byhetero
> lighting flat
> select clear
> lighting soft
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> ui tool show "Color Actions"
> color (#!2 & sel) #b6b600ff
> color (#!2 & sel) #bcbc00ff
> color (#!2 & sel) #bdbd00ff
> color (#!2 & sel) #bfbf00ff
> color (#!2 & sel) #c1c100ff
> color (#!2 & sel) #c2c200ff
> color (#!2 & sel) #c8c800ff
> color (#!2 & sel) #caca00ff
> color (#!2 & sel) #cece00ff
> color (#!2 & sel) #cfcf00ff
> color (#!2 & sel) #d1d100ff
> color (#!2 & sel) #d5d500ff
> color (#!2 & sel) #d6d600ff
> color (#!2 & sel) #d8d800ff
> color (#!2 & sel) #ffff7fff
> color (#!2 & sel) #ffff00ff
> color (#!2 & sel) #fafa00ff
> color (#!2 & sel) #f3f300ff
> color (#!2 & sel) #f1f100ff
> color (#!2 & sel) #e5e500ff
> color (#!2 & sel) #dcdc00ff
> color (#!2 & sel) #d1d100ff
> color (#!2 & sel) #cccc00ff
> color (#!2 & sel) #cece00ff
> color (#!2 & sel) #d1d100ff
> color (#!2 & sel) #d4d400ff
> color (#!2 & sel) #d6d600ff
> color (#!2 & sel) #dada00ff
> color (#!2 & sel) #dddd00ff
> color (#!2 & sel) #dede00ff
> color (#!2 & sel) #dfdf00ff
> color (#!2 & sel) #e1e100ff
> color (#!2 & sel) #dfdf00ff
> color (#!2 & sel) #dede00ff
> color (#!2 & sel) byhetero
> select clear
> show #!5 models
> hide #!5 models
> graphics silhouettes true width 3
> graphics silhouettes true width 2.5
> view 3_initial
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15 21h-wt.cxs"
——— End of log from Sat Mar 15 15:10:40 2025 ———
opened ChimeraX session
> show #1 models
> hide #!2 models
> select #1/A
3061 atoms, 3145 bonds, 393 residues, 1 model selected
> color sel orange
> select #1/B
3061 atoms, 3145 bonds, 393 residues, 1 model selected
> color sel light sea green
> color sel purple
> select #1/C
3061 atoms, 3145 bonds, 393 residues, 1 model selected
> color sel forest green
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #1 models
> show #1 models
> hide #!2 models
> select #1 name="21H"
Expected a keyword
> select #1/name="21H"
Expected an objects specifier or a keyword
> ui mousemode right select
> show #!2 models
> select clear
> hide #!2 models
> select #1/B:481@C3
1 atom, 1 residue, 1 model selected
> select clear
> select #1/B:481@C8
1 atom, 1 residue, 1 model selected
> select #1/B:481@C8
1 atom, 1 residue, 1 model selected
> select clear
> ui mousemode right select
> select clear
> select #1/B:481@C3
1 atom, 1 residue, 1 model selected
> select #1/B:481@O1
1 atom, 1 residue, 1 model selected
Drag select of 1 atoms, 1 bonds
> select add #1/B:481@C2
2 atoms, 1 bond, 1 residue, 1 model selected
> select add #1/B:481@N2
3 atoms, 1 bond, 1 residue, 1 model selected
> select add #1/B:481@C26
1 atom, 1 bond, 1 residue, 1 model selected
> select add #1/B:481@C15
2 atoms, 1 bond, 1 residue, 1 model selected
> select #1 21h
Expected a keyword
> select #1
12244 atoms, 12590 bonds, 1572 residues, 1 model selected
> select clear
> ui mousemode right select
> select #1/B:481@C21
1 atom, 1 residue, 1 model selected
> select down
1 atom, 1 residue, 1 model selected
> select up
34 atoms, 36 bonds, 1 residue, 1 model selected
> select ~sel & ##selected
12244 atoms, 12590 bonds, 1572 residues, 1 model selected
> select ~sel & ##selected
Nothing selected
> select #1/D:481@C6
1 atom, 1 residue, 1 model selected
> select up
34 atoms, 36 bonds, 1 residue, 1 model selected
> ui tool show "Side View"
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select down
1 bond, 1 model selected
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
34 atoms, 36 bonds, 1 residue, 1 model selected
> select up
36 atoms, 37 bonds, 2 residues, 1 model selected
> select up
68 atoms, 72 bonds, 2 residues, 1 model selected
> select add #1/C:481@C4
69 atoms, 72 bonds, 3 residues, 1 model selected
> select up
102 atoms, 108 bonds, 3 residues, 1 model selected
> select up
9183 atoms, 9445 bonds, 1179 residues, 1 model selected
> select down
102 atoms, 108 bonds, 3 residues, 1 model selected
> select up
104 atoms, 109 bonds, 4 residues, 1 model selected
> select up
136 atoms, 144 bonds, 4 residues, 1 model selected
> ui tool show "Color Actions"
> show #!2 models
> color sel #ffff7fff
> color sel #ffff00ff
> color sel #fefe00ff
> color sel #fcfc00ff
> color sel #f3f300ff
> color sel #f1f100ff
> color sel #efef00ff
> color sel #eeee00ff
> color sel #ebeb00ff
> color sel #e8e800ff
> color sel #e7e700ff
> color sel #e6e600ff
> color sel #e5e500ff
> color sel #e3e300ff
> color sel #e1e100ff
> color sel #dddd00ff
> color sel #dcdc00ff
> color sel #d9d900ff
> color sel #d8d800ff
> color sel #d6d600ff
> color sel #d5d500ff
> color sel #d6d600ff
> color sel #d8d800ff
> color sel #dada00ff
> hide #!2 models
> show #!2 models
> hide #1 models
> show #1 models
> hide #1 models
> hide #!2 models
> show #!2 models
> select add #2/D:481@C1
137 atoms, 144 bonds, 5 residues, 2 models selected
> select up
170 atoms, 180 bonds, 5 residues, 2 models selected
> hide #!2 models
> show #1 models
> select clear
> select add #1/B:481@C1
1 atom, 1 residue, 1 model selected
> select up
34 atoms, 36 bonds, 1 residue, 1 model selected
> select up
3061 atoms, 3145 bonds, 393 residues, 1 model selected
> select down
34 atoms, 36 bonds, 1 residue, 1 model selected
> select ~sel & ##selected
12210 atoms, 12554 bonds, 1571 residues, 1 model selected
> select ~sel & ##selected
34 atoms, 36 bonds, 1 residue, 1 model selected
> select ~sel & ##selected
12210 atoms, 12554 bonds, 1571 residues, 1 model selected
> select ~sel & ##selected
34 atoms, 36 bonds, 1 residue, 1 model selected
> select up
36 atoms, 37 bonds, 2 residues, 1 model selected
> select up
68 atoms, 72 bonds, 2 residues, 1 model selected
> select add #1/C:481@C8
69 atoms, 72 bonds, 3 residues, 1 model selected
> select up
102 atoms, 108 bonds, 3 residues, 1 model selected
> select up
9183 atoms, 9445 bonds, 1179 residues, 1 model selected
> select down
102 atoms, 108 bonds, 3 residues, 1 model selected
> select add #1/A:481@C1
103 atoms, 108 bonds, 4 residues, 1 model selected
> select up
136 atoms, 144 bonds, 4 residues, 1 model selected
> color sel byhetero
> view name tert_1
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15
> 21h-wt-2.cxs"
> show #!2 models
> hide #1 models
> show #1 models
> hide #!2 models
> select clear
> view name 3_initial
> view 2_initial
> view 3_initial
> view 1_initial
> show #!2 models
> hide #1 models
> view name 3_initial
> view 3_initial
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15
> 21h-wt-2.cxs"
> view tert_1
> show #1 models
> hide #!2 models
> select clear
> view list
Named views: 1_initial, 2_initial, 3_initial, tert_1
> view 1_initial
> view 2_initial
> view 3_initial
> show #!2 models
> hide #1 models
Drag select of 2 residues
> ui mousemode right select
> select clear
> view tert_1
> show #1 models
> hide #!2 models
> graphics silhouettes true
> select
15305 atoms, 15745 bonds, 8 pseudobonds, 1965 residues, 6 models selected
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> select ~sel & ##selected
15135 atoms, 15565 bonds, 8 pseudobonds, 1960 residues, 3 models selected
> hide sel & #1 atoms
> select clear
> view
> show #!2 models
> hide #!2 models
> show #!2 models
> show #4 models
> hide #4 models
> show #!5 models
> hide #!5 models
> hide #!2 models
> hide #1 models
> show #1 models
> graphics silhouettes true
> graphics silhouettes true width 2
> graphics silhouettes true width 1
> graphics silhouettes true width 1.5
> save C:\Users\hp/Desktop\image3.png supersample 3
> lighting soft
> lighting simple
> lighting full
> lighting flat
> lighting soft
> lighting flat
> lighting soft
> lighting simple
> lighting full
> lighting flat
> lighting soft
> cd "C:/Users/hp/坚果云/科研/研二/TEXAS/建模/25.3.16 画图"
Current working directory is: C:\Users\hp\坚果云\科研\研二\TEXAS\建模\25.3.16 画图
> save C:\Users\hp/Desktop\image4.png supersample 3
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> preset "overall look" "publication 2 (depth-cued)"
Using preset: Overall Look / Publication 2 (Depth-Cued)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes f
lighting depthCue t
> preset "overall look" interactive
Using preset: Overall Look / Interactive
> set bgColor transparent
Preset expands to these ChimeraX commands:
~set bg
graphics silhouettes f
lighting depthCue t
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
> set bgColor #ffffff00
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> save "C:/Users/hp/坚果云/科研/研二/TEXAS/建模/25.3.16 画图/25.3.16 画图 wt21h.cxs"
> show #!2 models
> show #4 models
> hide #1 models
> show #!5 models
> view list
Named views: 1_initial, 2_initial, 3_initial, tert_1
> view 1_initial
> view 2_initial
> view 3_initial
> hide #4 models
> graphics silhouettes true width 2
> save C:\Users\hp/Desktop\image4.png supersample 3
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 wt_21h.mrc"
Opened 25.3.14 wt_21h.mrc as #3, grid size 140,140,140, pixel 1.32, shown at
level 0.15, step 1, values float32
> volume #3 level 0.07714
> hide #!3 models
> show #!3 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!3 models
> hide #!5 models
> show #!5 models
> show #!3 models
> hide #!3 models
> rename #5 "25.3.14 wt_21h.mrc 21h density"
> show #5.2 models
> hide #5.2 models
> hide #5.1 models
> show #5.1 models
> show #!3 models
> hide #!3 models
> show #!3 models
Drag select of 2 residues, 1 bonds, 3 25.3.14 wt_21h.mrc
> select add #3
17 atoms, 1 bond, 2 residues, 6 models selected
> select subtract #3
17 atoms, 1 bond, 2 residues, 2 models selected
> select add #2
3061 atoms, 3155 bonds, 4 pseudobonds, 393 residues, 3 models selected
> select subtract #2
1 model selected
> hide #!3 models
> show #!3 models
> volume #3 level 0.09218
> hide #!5 models
> ui mousemode right "map eraser"
> hide #6 models
> show #6 models
> hide #!3 models
> show #!3 models
> volume erase #3 center 62.69,105.1,94.749 radius 15.893 outside true
Opened 25.3.14 wt_21h.mrc copy as #7, grid size 140,140,140, pixel 1.32, shown
at step 1, values float32
> transparency 50 target s
> hide #6 models
> show #6 models
> transparency 90 target s
> transparency 10 target s
> transparency 20 target s
> transparency 50 target s
> transparency 0 target c
> volume erase #7 center 76.523,109.52,100.41 radius 3.5112
> volume erase #7 center 72.058,115.09,96.752 radius 3.5112
> volume erase #7 center 74.36,119.22,94.186 radius 3.5112
> volume erase #7 center 69.758,101.63,108.8 radius 3.5112
> volume erase #7 center 62.199,108.6,101.69 radius 3.5112
> volume erase #7 center 58.309,96.828,101.85 radius 3.5112
> volume erase #7 center 60.68,100.3,100.16 radius 1.386
> volume erase #7 center 67.626,102.69,98.062 radius 1.386
> volume erase #7 center 62.979,103.41,93.61 radius 3.1416
> volume erase #7 center 60.901,105.73,90.505 radius 2.9568
> volume erase #7 center 61.499,105.84,91.783 radius 2.9568
> volume erase #7 center 63.142,104.78,91.063 radius 2.9568
> volume erase #7 center 63.508,106.53,90.43 radius 2.9568
> volume erase #7 center 64.199,106.94,90.048 radius 2.9568
> volume erase #7 center 66.648,104.34,91.488 radius 2.1252
> volume erase #7 center 69.285,103.91,92.722 radius 2.1252
> volume erase #7 center 69.538,104.29,91.851 radius 2.1252
> volume erase #7 center 71.21,103.43,93.481 radius 2.1252
> volume erase #7 center 71.299,103.39,93.068 radius 2.1252
> volume erase #7 center 72.911,102.19,94.843 radius 2.1252
> volume erase #7 center 73.094,101.84,96.16 radius 2.1252
> volume erase #7 center 62.035,103.31,86.972 radius 1.2012
> show #!5 models
> save "C:/Users/hp/坚果云/科研/研二/TEXAS/建模/25.3.16 画图/25.3.16 -2 画图 wt21h.cxs"
> color #7 #ffffff80 models
> color #7 #f4f4f480 models
> color #7 #e8e8e880 models
> color #7 #e5e5e580 models
> select down
Nothing selected
> transparency 60 target s
> transparency 70 target s
> hide #!7 models
> show #!7 models
> transparency 50 target c
> transparency 10 target c
> transparency 100 target c
> transparency 1 target c
> transparency 100 target c
> transparency 0 target c
> transparency 1 target c
> transparency 10 target c
> transparency 90 target c
> transparency 10 target c
> transparency 0 target c
> hide #!7 models
> show #!7 models
> transparency 50 target c
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> color #7 #ffffff4c models
> color #7 #00ffff4c models
> undo
[Repeated 9 time(s)]
> color #7 #ffffff4c models
> color #7 #b9b9b94c models
> color #7 #a8a8a84c models
> color #7 #c7c7c74c models
> hide #!2 models
> show #!2 models
> hide #7.1.1 models
> show #7.1.1 models
> hide #7.1.2 models
> show #7.1.2 models
> hide #7.1.2 models
> hide #7.1.1 models
> show #7.1.2 models
> show #7.1.1 models
> hide #7.1.2 models
> hide #7.1.1 models
> hide #!7.1 models
> show #7.1 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> hide #7.1 models
> show #7.1 models
> hide #!7 models
> show #!7 models
> hide #2.1 models
> show #2.1 models
> show #!5 models
> transparency 50 target c
> view list
Named views: 1_initial, 2_initial, 3_initial, tert_1
> view 3_initial
> transparency 60 target c
> transparency 70 target c
> hide #!5 models
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/2hu4.pdb"
2hu4.pdb title:
N1 neuraminidase In complex with oseltamivir 2 [more info...]
Chain information for 2hu4.pdb #6
---
Chain | Description | UniProt
A B C D E F G H | neuraminidase Na | Q6DPL2_9INFA 83-470
Non-standard residues in 2hu4.pdb #6
---
G39 —
(3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic
acid (oseltamivir carboxylate)
> view #6 clip false
> close #6
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/2hu4A.pdb"
Chain information for 2hu4A.pdb #6
---
Chain | Description
A | No description available
Computing secondary structure
> matchmaker
Missing or invalid "matchAtoms" argument: empty atom specifier
> matchmaker #7 to #2
No molecules/chains to match specified
> matchmaker #6 to #2
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 25.3.14 wt 21h.pdb, chain D (#2) with 2hu4A.pdb, chain A (#6),
sequence alignment score = 1915.6
RMSD between 381 pruned atom pairs is 0.596 angstroms; (across all 385 pairs:
0.787)
> close #8
> hide #7.1 models
> ui mousemode right select
> select #6/A:118
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> select #6/A:406@CG
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select down
1 bond, 1 model selected
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> hide sel atoms
> select ~sel & ##selected
2982 atoms, 3065 bonds, 386 residues, 1 model selected
> select ~sel & ##selected
Nothing selected
> select #6/A:406@CE1
1 atom, 1 residue, 1 model selected
> select down
1 atom, 1 residue, 1 model selected
> select up
12 atoms, 12 bonds, 1 residue, 1 model selected
> select up
64 atoms, 66 bonds, 8 residues, 1 model selected
> select down
12 atoms, 12 bonds, 1 residue, 1 model selected
> select up
64 atoms, 66 bonds, 8 residues, 1 model selected
> select down
12 atoms, 12 bonds, 1 residue, 1 model selected
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
12 atoms, 12 bonds, 1 residue, 1 model selected
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel cartoons
> undo
> select #6/A:294@CG
1 atom, 1 residue, 1 model selected
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel atoms
> select #6/A:227
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
120 atoms, 121 bonds, 14 residues, 1 model selected
> select down
9 atoms, 8 bonds, 1 residue, 1 model selected
> show sel atoms
> select #6/A:276
9 atoms, 8 bonds, 1 residue, 1 model selected
> show sel atoms
> select #6/A:274
10 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> transparency 70 target c
> transparency 50 target c
> color #6 #d5d5d5ff
> color #6 #f1f1f1ff
> select #6/A
2982 atoms, 3065 bonds, 386 residues, 1 model selected
> color sel byhetero
> select clear
> select #6/A:800@C1
1 atom, 1 residue, 1 model selected
> select up
20 atoms, 20 bonds, 1 residue, 1 model selected
> ui tool show "Color Actions"
> color sel light gray
> color sel byhetero
> color sel dark turquoise
> color sel deep sky blue
> color sel medium turquoise
> color sel light sea green
> color sel medium aquamarine
[Repeated 1 time(s)]
> color sel light gray
> color sel byhetero
> view 3_initial
[Repeated 2 time(s)]
> transparency 50 target c
> transparency 20 target c
> transparency 90 target c
> transparency 80 target c
> color #6 #d5d5d5ff
> color sel byhetero
> select clear
> view 3_initial
> select #6/A
2982 atoms, 3065 bonds, 386 residues, 1 model selected
> color sel byhetero
> select clear
> select #6/A:151@CG
1 atom, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/D:151@CG
1 atom, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 2 models selected
> select add #6/A:151@CG
9 atoms, 7 bonds, 2 residues, 3 models selected
> select up
16 atoms, 14 bonds, 2 residues, 3 models selected
> hide sel atoms
> select clear
> select #2/D:228@CD
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 2 models selected
> select up
11 atoms, 9 bonds, 2 residues, 3 models selected
> hide sel atoms
> select #6/A:227@OE1
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 1 model selected
> hide sel cartoons
> undo
[Repeated 4 time(s)]
> select clear
> select #2/D:228@CD
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 2 models selected
> hide sel atoms
> select #6/A:227@CG
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 1 model selected
> hide sel cartoons
> undo
> select #6/A:227@CD
1 atom, 1 residue, 1 model selected
> select #6/A:227@CD
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 1 model selected
> hide sel cartoons
> undo
> select clear
> select #6/A:227@CD
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
120 atoms, 121 bonds, 14 residues, 1 model selected
> select down
9 atoms, 8 bonds, 1 residue, 1 model selected
> hide sel cartoons
[Repeated 1 time(s)]
> hide sel atoms
> hide sel cartoons
[Repeated 1 time(s)]
> undo
[Repeated 4 time(s)]
> hide sel atoms
> select clear
> view 3_initial
> select #6/A:119@CD
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #2/D:119@CD
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 2 models selected
> select add #6/A:119@CD
10 atoms, 8 bonds, 2 residues, 3 models selected
> select up
18 atoms, 16 bonds, 2 residues, 3 models selected
> hide sel atoms
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 2 models selected
> hide sel atoms
> select clear
> save "C:/Users/hp/坚果云/科研/研二/TEXAS/建模/25.3.16 画图/25.3.16 -3 wt21h vs
> 2hu4.cxs"
> ui mousemode right distance
> distance #6/A:800@C2 #2/D:481@C6
Distance between 2hu4A.pdb #6/A G39 800 C2 and 25.3.14 wt 21h.pdb #2/D 21H 481
C6: 1.152Å
> view 3_initial
> undo
[Repeated 2 time(s)]
> view 3_initial
> close #8
> select clear
> show #4 models
> hide #4 models
> show #!5 models
> close #8
> hide #!5 models
> hide #6 models
> show #6 models
> hide #6 models
> show #6 models
> hide #6 models
> show #6 models
> show #1 models
> hide #1 models
> show #!3 models
> hide #!3 models
> view 3_initial
[Repeated 1 time(s)]
> ui mousemode right select
> select #6/A:136
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
50 atoms, 49 bonds, 7 residues, 1 model selected
> select down
9 atoms, 8 bonds, 1 residue, 1 model selected
> show sel atoms
> transparency #6 80 cartoons
> transparency #6 50 cartoons
> transparency #6 30 cartoons
> select up
50 atoms, 49 bonds, 7 residues, 1 model selected
> select up
2962 atoms, 3045 bonds, 385 residues, 1 model selected
> select up
2982 atoms, 3065 bonds, 386 residues, 1 model selected
> select up
18287 atoms, 18810 bonds, 8 pseudobonds, 2351 residues, 10 models selected
> select clear
> view 3_initial
> select #6/A:156
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> select clear
[Repeated 1 time(s)]
> select ~sel & ##selected
Nothing selected
> select ~sel & ##selected
Nothing selected
> view name 1_pocket
> view list
Named views: 1_initial, 1_pocket, 2_initial, 3_initial, tert_1
> view 1_pocket
> ui mousemode right distance
> distance #2/D:481@C5 #6/A:800@C7
Distance between 25.3.14 wt 21h.pdb #2/D 21H 481 C5 and 2hu4A.pdb #6/A G39 800
C7: 0.921Å
> view 1_pocket
> save "C:/Users/hp/坚果云/科研/研二/TEXAS/建模/25.3.16 画图/25.3.16 -3 wt21h vs
> 2hu4.cxs"
——— End of log from Sun Mar 16 15:13:15 2025 ———
opened ChimeraX session
> ui tool show "Side View"
> close #8
> close #6
> close #3
> close #4
> show #!5 models
> hide #!5 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> close #1
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 275Y
> 21h.pdb"
Chain information for 25.3.14 275Y 21h.pdb #1
---
Chain | Description
D | No description available
3 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Computing secondary structure
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14
> 275Y_21h.mrc"
Opened 25.3.14 275Y_21h.mrc as #3, grid size 140,140,140, pixel 1.32, shown at
level 0.117, step 1, values float32
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #1 target m
> view
> matchmaker #2 to #1
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 25.3.14 275Y 21h.pdb, chain D (#1) with 25.3.14 wt 21h.pdb, chain D
(#2), sequence alignment score = 1999.1
RMSD between 387 pruned atom pairs is 0.324 angstroms; (across all 387 pairs:
0.324)
> show #!2 models
> show #!3 models
> hide #!3 models
> hide #!2 models
> show #!5 models
> hide #!5 models
> show #!7 models
> hide #!7 models
> close #7
> show #!3 models
> volume #3 level 0.07145
> volume #3 level 0.03174
> ui mousemode right "map eraser"
> volume erase #3 center 91.613,64.428,80.735 radius 11.123 outside true
Opened 25.3.14 275Y_21h.mrc copy as #6, grid size 140,140,140, pixel 1.32,
shown at step 1, values float32
> volume erase #6 center 98.618,57.188,83.829 radius 4.0656
> volume erase #6 center 94.822,55.775,87.095 radius 4.0656
> volume erase #6 center 99.806,63.101,78.238 radius 4.0656
> volume erase #6 center 98.875,60.067,80.232 radius 4.0656
> volume erase #6 center 99.828,63.732,85.403 radius 4.0656
> volume erase #6 center 97.018,60.325,89.986 radius 4.0656
> volume #3 level 0.02607
> hide #!3 models
> volume #6 level 0.008529
> volume #6 level 0.01317
> volume #6 level 0.01781
> select ~sel & ##selected
Nothing selected
> select ~sel & ##selected
Nothing selected
> volume erase #6 center 89.017,59.978,87.641 radius 3.8808
> volume erase #6 center 89.59,56.822,88.154 radius 3.8808
> volume erase #6 center 86.066,53.983,82.978 radius 3.8808
> volume erase #6 center 84.604,56.863,77.134 radius 3.8808
> volume erase #6 center 83.834,58.143,83.353 radius 3.8808
> volume erase #6 center 82.162,62.096,78.133 radius 3.8808
> volume erase #6 center 83.538,63.845,87.342 radius 3.8808
> volume erase #6 center 84.743,63.525,84.101 radius 3.5112
> volume erase #6 center 91.171,63.572,89.87 radius 4.5276
> volume erase #6 center 87.038,70.196,84.957 radius 4.5276
> volume erase #6 center 89.081,68.21,88.057 radius 4.5276
> volume #6 level 0.02942
> volume erase #6 center 83.494,67.502,83.014 radius 4.5276
> volume erase #6 center 83.563,68.737,78.108 radius 4.5276
> volume erase #6 center 86.215,68.979,79.277 radius 4.5276
> volume erase #6 center 85.148,66.217,72.926 radius 4.5276
> volume erase #6 center 85.992,71.191,75.216 radius 4.5276
> volume erase #6 center 86.386,70.951,74.439 radius 4.5276
> volume erase #6 center 88.692,76.09,80.436 radius 4.5276
> view
> volume erase #6 center 91.619,75.254,83.957 radius 4.5276
> volume erase #6 center 97.416,74.451,74.986 radius 4.5276
> volume erase #6 center 98.116,74.594,80.872 radius 4.5276
> volume erase #6 center 97.535,75.817,78.546 radius 4.5276
> volume erase #6 center 100.72,69.575,79.445 radius 4.5276
> volume erase #6 center 99.211,68.146,75.47 radius 4.5276
> volume erase #6 center 97.889,64.115,73.788 radius 4.5276
> volume erase #6 center 96.919,67.665,71.956 radius 4.5276
> volume erase #6 center 96.573,64.769,75.838 radius 4.5276
> volume erase #6 center 97.42,71.047,87.625 radius 4.5276
> volume erase #6 center 97.496,65.239,86.946 radius 4.5276
> volume erase #6 center 95.709,68.07,90.4 radius 4.5276
> volume erase #6 center 94.199,70.714,87.669 radius 4.5276
> volume erase #6 center 98.677,64.318,84.679 radius 4.5276
[Repeated 1 time(s)]
> volume erase #6 center 98.956,64.424,84.286 radius 4.5276
> volume #6 style mesh
> volume erase #6 center 93.018,75.186,77.84 radius 2.1252
> volume erase #6 center 92.989,74.965,77.8 radius 2.1252
> volume erase #6 center 92.995,74.753,77.742 radius 2.1252
> close #4
> rename #6 "275y+21h density"
> show #!5 models
> hide #!5 models
> color #5 #ffffff4c models
> undo
[Repeated 1 time(s)]
> color #5 #00aaff4c models
> color #5 #0055ff4c models
> color #5 #00aaff4c models
> color #6 #00aaffff models
> hide #!5 models
> close #5
> show #!3 models
> hide #!3 models
> show #!2 models
> hide #!2 models
> show #!2 models
> volume #6 level 0.04638
> volume #6 level 0.07089
> select #1/D
3063 atoms, 3147 bonds, 393 residues, 1 model selected
> ui tool show "Color Actions"
> color sel dodger blue
> color sel cornflower blue
> color sel byhetero
> select ::name="21H"
68 atoms, 72 bonds, 2 residues, 2 models selected
> ui mousemode right select
> select clear
> select #1/D:481@C14
1 atom, 1 residue, 1 model selected
> select up
34 atoms, 36 bonds, 1 residue, 1 model selected
> color sel #00aaffff
> color sel #0055ffff
> color sel #00ffffff
> color sel #55ff00ff
> color sel #55ffffff
> color sel #5555ffff
> color sel #55aaffff
> color sel #0000ffff
> color sel #5555ffff
> color sel #55aaffff
> color sel #5555ffff
> ui tool show "Color Actions"
> color sel dodger blue
> color sel cornflower blue
> color sel byhetero
> color sel byelement
> color sel byhetero
[Repeated 1 time(s)]
> color sel teal
> color sel steel blue
> color sel dark cyan
> color sel cornflower blue
> color sel byhetero
> color sel #5454fdff
> color sel #5252f5ff
> color sel #5151f3ff
> color sel #5050efff
> color sel #5252f5ff
> color sel #5252f7ff
> color sel #5353f9ff
> color sel #5555ffff
> color sel cornflower blue
> color sel #f6f6f6ff
> color sel #f3f3f3ff
> color sel #fefefeff
> color sel #1b1b1bff
> color sel #fefefeff
> color sel #fbfbfbff
> color sel #fefefeff
> color sel #6495edff
> color sel #6496ecff
> color sel #6597eeff
> color sel #6495ebff
> color sel #5e8edfff
> color sel #5c8ad9ff
> color sel #5a87d4ff
> color sel #5681cbff
> color sel #547ec7ff
> color sel #547ec6ff
> color sel #5079beff
> color sel #5077bcff
> color sel #5078bdff
> color sel #5079beff
> color sel #608fe2ff
> color sel #6699f1ff
> color sel #679af3ff
> color sel #6ca2ffff
> color sel #00aaffff
> color sel #d5f6f6ff
> color sel #d9bcacff
> color sel #fefefeff
> color sel #eaeaeaff
> color sel #fefefeff
> color sel #008b8bff
> color sel #fefefeff
> color sel #6495edff
> color sel #ffffffff
> color sel #6495edff
> color sel #6598efff
> color sel #6ca2ffff
> color sel byhetero
> transparency #1 50 target c
> color sel #679bf4ff
> color sel #6597eeff
> color sel #6495ebff
> color sel #608fe2ff
> color sel #5682ccff
> color sel #537cc3ff
> color sel #4e75b8ff
> color sel #496eadff
> color sel #4669a5ff
> color sel #4466a1ff
> color sel #4567a2ff
> color sel #4669a5ff
> color sel #4b70b0ff
> color sel #4c72b4ff
> color sel #5079beff
> color sel #537cc3ff
> color sel #5680caff
> color sel #5783ceff
> color sel #5884d0ff
> color sel #5a87d4ff
> color sel #5986d3ff
> color sel #5883cfff
> color sel #5783ceff
> color sel #557fc8ff
> color sel #6ca2ffff
> color sel #6ba3fdff
> color sel #669bf0ff
> color sel #659aefff
> color sel #6599eeff
> color sel #6194e5ff
> color sel #5c8cd9ff
> color sel #5a89d5ff
> color sel #5a89d4ff
> color sel #5988d3ff
> color sel #5886d0ff
> color sel #5987d1ff
> color sel #5988d3ff
> color sel #5b8ad6ff
> color sel #5b8bd8ff
> color sel #5785ceff
> color sel #5683ccff
> color sel #5683cbff
> color sel #5682caff
> color sel #5480c6ff
> color sel #5480c7ff
> color sel #5581c8ff
> color sel #5682caff
> color sel #5785ceff
> color sel byhetero
> select clear
[Repeated 1 time(s)]
> select #1/D:275
12 atoms, 12 bonds, 1 residue, 1 model selected
> select up
88 atoms, 91 bonds, 10 residues, 1 model selected
> select down
12 atoms, 12 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1/D:293
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1/D:294@CG
1 atom, 1 residue, 1 model selected
> hide sel atoms
[Repeated 1 time(s)]
> select #1/D:302
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/D:294@OD1
1 atom, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel atoms
> select clear
> select #1/D:368
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1/D:470@CA
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select #1/D:469@CA
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
12 atoms, 12 bonds, 1 residue, 1 model selected
> hide sel atoms
> select #1/D:118
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> select clear
> select #2/D:119
9 atoms, 8 bonds, 1 residue, 1 model selected
> show sel atoms
> select #2/D:228
9 atoms, 8 bonds, 1 residue, 1 model selected
> show sel atoms
> select #2/D:151
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1/D:344@CG
1 atom, 1 residue, 1 model selected
> select up
12 atoms, 12 bonds, 1 residue, 1 model selected
> hide sel atoms
> select clear
> select #1/D:324@CG
1 atom, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel atoms
> select #1/D:480@O5
1 atom, 1 residue, 1 model selected
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
14 atoms, 14 bonds, 1 residue, 1 model selected
> hide sel atoms
> select #1/D:146@CG
1 atom, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel atoms
> select #2/D:278
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #2/D:293
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #2/D:293
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #2/D:292
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #2/D:292-293
17 atoms, 16 bonds, 2 residues, 1 model selected
> select #2/D:294
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/D:294
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/D:293
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #2/D:293
11 atoms, 10 bonds, 1 residue, 1 model selected
> select clear
> hide #!6 models
> select #1/D:481@C5
1 atom, 1 residue, 1 model selected
> select up
34 atoms, 36 bonds, 1 residue, 1 model selected
> color sel forest green
> color sel byhetero
> show #!3 models
> hide #!3 models
> show #!6 models
> select clear
> lighting flat
> lighting full
> lighting soft
> ui mousemode right label
> label #1/D:275
> ui mousemode right "move label"
> ui mousemode right label
> label #2/D:277
[Repeated 1 time(s)]
> label #2/D:293
> label #2/D:368
> label #1/D:118
> label #1/D:119
> label #2/D:152
> label #2/D:156
> label #1/D:136
> ui mousemode right "move label"
> ui mousemode right label
> label #2/D:151
> label residues format "%a"
Expected a keyword
> ui tool show "Basic Actions"
> ui tool show "Render/Select by Attribute"
> label delete residues
[Repeated 1 time(s)]
> undo
[Repeated 2 time(s)]
> show #!6 models
> label delete residues
[Repeated 2 time(s)]
> ui mousemode right select
> select clear
> ui mousemode right label
[Repeated 3 time(s)]
> label #1-2,6 attribute label_one_letter_code
> undo
> ~label sel residues
> label delete residues
> ui mousemode right select
> select up
4 atoms, 2 bonds, 2 residues, 2 models selected
> select up
22 atoms, 20 bonds, 2 residues, 3 models selected
> label (#1#!2 & sel) attribute label_one_letter_code
> label (#!1-2 & sel) text "{0.name} {0.number}{0.insertion_code}"
> label (#!1-2 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> select clear
[Repeated 1 time(s)]
> ui mousemode right "move label"
> ui mousemode right label
> label delete residues
[Repeated 1 time(s)]
> ui mousemode right select
> save "C:/Users/hp/坚果云/科研/研二/TEXAS/建模/25.3.16 画图/25.3.16-5 275+21h vs
> wt+21h.cxs"
> ui mousemode right select
> select #1/D:246
7 atoms, 7 bonds, 1 residue, 1 model selected
> select add #1/D:248
15 atoms, 14 bonds, 2 residues, 1 model selected
> select add #2/D:247
21 atoms, 19 bonds, 3 residues, 2 models selected
> select up
77 atoms, 77 bonds, 12 residues, 3 models selected
> select add #2/D:245
81 atoms, 80 bonds, 13 residues, 3 models selected
> select add #2/D:251
86 atoms, 84 bonds, 14 residues, 3 models selected
> hide sel cartoons
> select #2/D:296
14 atoms, 15 bonds, 1 residue, 1 model selected
> select add #1/D:296
28 atoms, 30 bonds, 2 residues, 3 models selected
> select add #2/D:295
36 atoms, 37 bonds, 3 residues, 3 models selected
> select add #1/D:295
44 atoms, 44 bonds, 4 residues, 3 models selected
> select add #1/D:294
52 atoms, 51 bonds, 5 residues, 3 models selected
> select add #2/D:294
60 atoms, 58 bonds, 6 residues, 3 models selected
> hide sel atoms
> hide sel cartoons
> select up
4 atoms, 2 bonds, 2 residues, 2 models selected
> select up
22 atoms, 20 bonds, 2 residues, 3 models selected
> hide sel atoms
> select add #1/D:151@CB
23 atoms, 21 bonds, 3 residues, 3 models selected
> select up
28 atoms, 23 bonds, 5 residues, 3 models selected
> select up
47 atoms, 44 bonds, 5 residues, 3 models selected
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 2 models selected
> hide sel atoms
> select add #2/D:156@CZ
1 atom, 1 bond, 1 residue, 2 models selected
> select up
4 atoms, 2 bonds, 2 residues, 3 models selected
> select up
22 atoms, 20 bonds, 2 residues, 3 models selected
> hide sel atoms
> select up
4 atoms, 2 bonds, 2 residues, 2 models selected
> select up
22 atoms, 20 bonds, 2 residues, 3 models selected
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
11 atoms, 9 bonds, 2 residues, 2 models selected
> select up
18 atoms, 16 bonds, 2 residues, 3 models selected
> hide sel atoms
> select #1/D:119@CG
1 atom, 1 residue, 1 model selected
> select add #2/D:119@CG
2 atoms, 2 residues, 2 models selected
> select up
18 atoms, 16 bonds, 2 residues, 3 models selected
> select up
174 atoms, 176 bonds, 22 residues, 3 models selected
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
11 atoms, 10 bonds, 1 residue, 2 models selected
> select up
13 atoms, 11 bonds, 2 residues, 3 models selected
> select up
22 atoms, 20 bonds, 2 residues, 3 models selected
> hide sel atoms
> select #2/D:293@NE
1 atom, 1 residue, 1 model selected
> select add #1/D:293@NE
2 atoms, 2 residues, 3 models selected
> select up
22 atoms, 20 bonds, 2 residues, 3 models selected
> select up
172 atoms, 176 bonds, 20 residues, 3 models selected
> hide sel atoms
> select #2/D:293
11 atoms, 10 bonds, 1 residue, 1 model selected
> select add #1/D:293
22 atoms, 20 bonds, 2 residues, 3 models selected
> select add #2/D:297
32 atoms, 30 bonds, 3 residues, 3 models selected
> select add #1/D:297
42 atoms, 40 bonds, 4 residues, 3 models selected
> show sel cartoons
> select #2/D:293
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #2/D:293
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #2/D:293-297
51 atoms, 53 bonds, 5 residues, 1 model selected
> show sel cartoons
> ui tool show "Show Sequence Viewer"
> sequence chain #2/D
Alignment identifier is 2/D
> select #2/D:293
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #2/D:293-297
51 atoms, 53 bonds, 5 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> ui tool show "Show Sequence Viewer"
> sequence chain #1/D
Alignment identifier is 1/D
> select #1/D:293
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1/D:293-297
51 atoms, 53 bonds, 5 residues, 1 model selected
> show sel cartoons
> select clear
> view name 1_275Y
> ui mousemode right distance
> distance #2/D:481@C15 #1/D:481@C14
Distance between 25.3.14 wt 21h.pdb #2/D 21H 481 C15 and 25.3.14 275Y 21h.pdb
#1/D 21H 481 C14: 1.620Å
> distance #2/D:277@OE1 #1/D:277@OE2
Distance between 25.3.14 wt 21h.pdb #2/D GLU 277 OE1 and 25.3.14 275Y 21h.pdb
#1/D GLU 277 OE2: 2.026Å
> ui mousemode right "move label"
> ui mousemode right select
> select #1/D:277@CD
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 1 model selected
> label sel text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> ui mousemode right "move label"
> ui mousemode right label
> label #1/D:275
> ui mousemode right "move label"
> view 1_275Y
> ui mousemode right label
> label delete residues
> undo
> view 1_275Y
> ui mousemode right "move label"
> label height 0.5
[Repeated 1 time(s)]
> ui mousemode right select
> select clear
[Repeated 3 time(s)]
> color #4.1 black models
> hide #!4 models
> show #!4 models
> ui mousemode right select
> select #1/D:277@OE2
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 1 model selected
> label sel text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> ui mousemode right "move label"
> label height 0.5
[Repeated 1 time(s)]
> ui mousemode right select
No visible atoms selected
> select #1/D:275@CZ
1 atom, 1 residue, 1 model selected
> select up
12 atoms, 12 bonds, 1 residue, 1 model selected
> label sel text H275Y
Drag select of 2 residues
> ui mousemode right "move label"
> select clear
> label height 0.5
> hide #4.1 models
> show #4.1 models
> hide #1.1 models
> show #1.1 models
> ui mousemode right select
> select #2/D:277@CD
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 2 models selected
> label delete sel
> select #1/D:277@CD
1 atom, 1 residue, 1 model selected
> label delete sel
> select #1/D:277@CD
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
88 atoms, 91 bonds, 10 residues, 1 model selected
> select down
9 atoms, 8 bonds, 1 residue, 1 model selected
> view name 1_275Y
> hide #1.1 models
> show #1.1 models
> label sel text E277
> ui mousemode right label
> ui mousemode right "move label"
> label height 0.5
> select clear
> label height 0.5
> ui mousemode right select
> select #1/D:275@CG
1 atom, 1 residue, 1 model selected
> select up
12 atoms, 12 bonds, 1 residue, 1 model selected
> label height 0.5
> select #2/D:275@CG
1 atom, 1 residue, 1 model selected
> select up
10 atoms, 10 bonds, 1 residue, 1 model selected
> label height 0.5
> label delete sel
> select #1/D:275@CZ
1 atom, 1 residue, 1 model selected
> select up
12 atoms, 12 bonds, 1 residue, 1 model selected
> label delete sel
> label sel text H275Y height 0.5
> view
> view list
Named views: 1_275Y, 1_initial, 1_pocket, 2_initial, 3_initial, tert_1
> view 1_275Y
> ui mousemode right "move label"
> view 1_275Y
[Repeated 1 time(s)]
> save "C:/Users/hp/坚果云/科研/研二/TEXAS/建模/25.3.16 画图/25.3.16-5 275+21h vs
> wt+21h.cxs"
——— End of log from Sun Mar 16 18:21:34 2025 ———
opened ChimeraX session
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> select add #1
3063 atoms, 3147 bonds, 393 residues, 2 models selected
> select add #2
6124 atoms, 6302 bonds, 786 residues, 3 models selected
> select add #4
6124 atoms, 6302 bonds, 2 pseudobonds, 786 residues, 6 models selected
> select add #6
6124 atoms, 6302 bonds, 2 pseudobonds, 786 residues, 8 models selected
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> preset "overall look" "publication 2 (depth-cued)"
Using preset: Overall Look / Publication 2 (Depth-Cued)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes f
lighting depthCue t
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> select subtract #6
6124 atoms, 6302 bonds, 2 pseudobonds, 786 residues, 6 models selected
> select subtract #4.1
6124 atoms, 6302 bonds, 2 pseudobonds, 786 residues, 5 models selected
> select add #4
6124 atoms, 6302 bonds, 2 pseudobonds, 786 residues, 6 models selected
> select subtract #2
3063 atoms, 3147 bonds, 393 residues, 4 models selected
> select subtract #1
1 model selected
> select subtract #4.1
Nothing selected
> select add #1
3063 atoms, 3147 bonds, 393 residues, 2 models selected
> select subtract #1
Nothing selected
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hbonds sel reveal true
12 hydrogen bonds found
> color #2 #ff8ad8ff
> color #2 #ff85ffff
> color #2 #d783ffff
> color #2 #ff7e79ff
> color #2 #ff2600ff
> color #2 #ff9300ff
> color #2 #941751ff
> color #2 #531b93ff
> color #2 #942193ff
> color #2 #ff40ffff
> color #2 #ff2f92ff
> color #2 #ff8ad8ff
> color #2 #ff8ad858
> color #2 #ff8ad81c
> color #2 #ff8ad8ca
> color #2 #ff8ad88a
> color #2 #ff8ad89b
> color #2 #ff8ad89c
> color #2 #ff8ad8ff
> select : 152, 119, 368, 156, 136
102 atoms, 92 bonds, 10 residues, 2 models selected
> show (#!1-2 & sel) target ab
> label (#!1-2 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> ~label (#!1-2 & sel) residues
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> select : 152, 119, 368, 156, 136
102 atoms, 92 bonds, 10 residues, 2 models selected
> label (#!1 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> label height 0.2
> hide #!2 models
> label height 0.4
> label height 0.5
> show #!2 models
> save "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/edited/1 wt+21h vs
> h275y+21h .cxs"
——— End of log from Tue Mar 18 15:54:31 2025 ———
opened ChimeraX session
> open "/Users/gulhabib/Documents/CryoEM/2. N274+21h /selected for chimmera
> editing 21h+h275Y.pdb"
Chain information for selected for chimmera editing 21h+h275Y.pdb #5
---
Chain | Description
A | No description available
3 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Computing secondary structure
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> close #5
> select: 277, 275, 293
Unknown command: select: 277, 275, 293
> select : 277, 275, 293
62 atoms, 58 bonds, 1 pseudobond, 6 residues, 3 models selected
> show (#!1-2 & sel) target ab
> label (#!1-2 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> hide #!2 models
> show #!2 models
> hide #3 models
> show #3 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!1 models
> show #!1 models
> select : 277, 275, 293
62 atoms, 58 bonds, 1 pseudobond, 6 residues, 3 models selected
> ~label (#!1-2 & sel) residues
> label (#!1-2 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hbonds sel reveal true
12 hydrogen bonds found
> hbonds sel reveal true
12 hydrogen bonds found
> hide #!2 models
> hbonds sel & #!1 reveal true
6 hydrogen bonds found
> hbonds sel & #!1 reveal true
6 hydrogen bonds found
> show #!2 models
> hide #!1 models
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hbonds sel & #!2 reveal true
6 hydrogen bonds found
> show #!1 models
> select : 147-156
164 atoms, 166 bonds, 20 residues, 2 models selected
> show (#!1-2 & sel) target ab
> hbonds sel reveal true
38 hydrogen bonds found
> select : 136, 277, 275, 274
82 atoms, 80 bonds, 1 pseudobond, 8 residues, 3 models selected
> hbonds sel reveal true
25 hydrogen bonds found
> hide #!6 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> select : 136, 277, 275, 274, 225
104 atoms, 100 bonds, 7 pseudobonds, 10 residues, 4 models selected
> label (#!2 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> color (#!2 & sel) byhetero
> show #!6 models
> select : 136, 277, 275, 274, 225, 253
128 atoms, 124 bonds, 15 pseudobonds, 12 residues, 4 models selected
> label (#!2 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> save /Users/gulhabib/Desktop/image3.png supersample 3
> show #!1 models
> hide #!2 models
> select : 136, 277, 275, 274, 225, 253
128 atoms, 124 bonds, 15 pseudobonds, 12 residues, 4 models selected
> label (#!1 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> save /Users/gulhabib/Desktop/image4.png supersample 3
> select : 136, 277, 275, 274, 225, 253, 274
128 atoms, 124 bonds, 15 pseudobonds, 12 residues, 4 models selected
> show #!2 models
> select : 136, 277, 275, 274, 225, 253, 274
128 atoms, 124 bonds, 15 pseudobonds, 12 residues, 4 models selected
> show (#!1-2 & sel) target ab
> preset "initial styles" "original look"
Using preset: Initial Styles / Original Look
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> select : 136, 277, 275, 274, 225, 253, 274
128 atoms, 124 bonds, 15 pseudobonds, 12 residues, 4 models selected
> show (#!1-2 & sel) target ab
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> open "/Users/gulhabib/Documents/CryoEM/structure1/3clo H275Y+oseltamivr
> reference .pdb"
Chain information for 3clo H275Y+oseltamivr reference .pdb #5
---
Chain | Description
A | No description available
Computing secondary structure
> hide #!2 models
> color #5 #ff40ffff
> matchmaker #5 to #1
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 25.3.14 275Y 21h.pdb, chain D (#1) with 3clo H275Y+oseltamivr
reference .pdb, chain A (#5), sequence alignment score = 1977.9
RMSD between 381 pruned atom pairs is 0.459 angstroms; (across all 385 pairs:
0.711)
> hide #!6 models
> select : 275, 277, 274
97 atoms, 97 bonds, 1 pseudobond, 9 residues, 4 models selected
> show (#!1,5 & sel) target ab
> label (#!1,5 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> hbonds sel & #!1,5 reveal true
35 hydrogen bonds found
> color #5 #9437ffff
> color #5 #00fdffff
> color #5 #00fa92ff
> color #5 #0096ffff
> color #5 #ff40ffff
> color #5 #ff85ffff
> open "/Users/gulhabib/Documents/CryoEM/3ckz n1+zanamivir H274Y .pdb"
3ckz n1+zanamivir H274Y .pdb title:
N1 neuraminidase H274Y + zanamivir [more info...]
Chain information for 3ckz n1+zanamivir H274Y .pdb #7
---
Chain | Description | UniProt
A | neuraminidase | Q6DPL2_9INFA 83-468
Non-standard residues in 3ckz n1+zanamivir H274Y .pdb #7
---
CA — calcium ion
ZMR — zanamivir (4-guanidino-2-deoxy-2,3-dehydro-N-acetyl-neuraminicacid;
4-guanidino-NEU5AC2EN; modified sialic acid)
> matchmaker #7 to #1
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 25.3.14 275Y 21h.pdb, chain D (#1) with 3ckz n1+zanamivir H274Y
.pdb, chain A (#7), sequence alignment score = 1984.5
RMSD between 381 pruned atom pairs is 0.486 angstroms; (across all 385 pairs:
0.738)
> select : 275, 277, 274
130 atoms, 130 bonds, 2 pseudobonds, 12 residues, 6 models selected
> show (#!1,5,7 & sel) target ab
> label (#!1,5,7 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> color #7 #73fa79ff
> color #7 #73fcd6ff
> color #7 #73fa79ff
> hbonds sel & #!1,5,7 reveal true
91 hydrogen bonds found
> color #7 #5e5e5eff
> color #5 #ff40ffff
> color #7 #009193ff
> color #7 #ff7e79ff
> color #7 #d4fb79ff
> select add #7
3272 atoms, 3175 bonds, 19 pseudobonds, 583 residues, 9 models selected
> select add #5
6224 atoms, 6208 bonds, 28 pseudobonds, 967 residues, 11 models selected
> select add #1
9254 atoms, 9322 bonds, 32 pseudobonds, 1357 residues, 12 models selected
> cartoon (#!1,5,7 & sel)
> preset "initial styles" "original look"
Using preset: Initial Styles / Original Look
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> lighting simple
> lighting full
> set bgColor black
> set bgColor transparent
> set bgColor white
> set bgColor #ffffff00
> view sel
> preset "initial styles" "original look"
Using preset: Initial Styles / Original Look
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> select subtract #1
6191 atoms, 6175 bonds, 27 pseudobonds, 964 residues, 9 models selected
> select subtract #5
3206 atoms, 3109 bonds, 18 pseudobonds, 577 residues, 6 models selected
> select subtract #7
31 atoms, 31 bonds, 3 residues, 2 models selected
> color #7 #0096ffff
> select : 275, 277, 274, 225
166 atoms, 162 bonds, 10 pseudobonds, 16 residues, 6 models selected
> select : 275, 277, 274, 225, 151, 152, 118, 119
322 atoms, 310 bonds, 10 pseudobonds, 32 residues, 6 models selected
> select : 275, 277, 274, 225, 21h, g39, zmr
277 atoms, 277 bonds, 16 pseudobonds, 20 residues, 6 models selected
> hbonds sel & #!1,5,7 reveal true
256 hydrogen bonds found
> color #7 #fffc79ff
> color #5 #ff7e79ff
> color #5 #ff40ffff
> color #1 #009193ff
> hide #!1 models
> hide #!4 models
> hide #4.1 models
> hide #3 models
> select : 275, 277, 274, 225, 21h, g39, zmr
277 atoms, 277 bonds, 20 pseudobonds, 20 residues, 6 models selected
> hbonds sel & #!5,7 reveal true
190 hydrogen bonds found
> show #3 models
> color #7 #ffd479ff
> color #5 #9437ffff
> color #5 #ff40ffff
> hide #!5 models
> hide #!7 models
> show #!5 models
> hide #!5 models
> show #!1 models
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hbonds sel & #!1 reveal true
20 hydrogen bonds found
> hbonds sel & #!1 reveal true
20 hydrogen bonds found
> show #!5 models
> select : 21h, g39, zmr
111 atoms, 115 bonds, 1 pseudobond, 4 residues, 5 models selected
> hbonds sel & #!1,5 reveal true
60 hydrogen bonds found
> color #5 #d783ffff
> color #5 #ff40ffff
> hide #!5 models
> show #!5 models
> show #!7 models
> color #7 #ff9300ff
> color #7 #fffb00ff
> select : 21h, g39, zmr
111 atoms, 115 bonds, 1 pseudobond, 4 residues, 5 models selected
> hbonds sel & #!1,5,7 reveal true
117 hydrogen bonds found
> hbonds sel & #!1,5,7 reveal true
117 hydrogen bonds found
> hbonds sel & #!1,5,7 reveal true
117 hydrogen bonds found
> color #7 #73fcd6ff
> color #7 #fffb00ff
> color #7 #fffc79ff
> color #5 #9437ffff
> color #5 #ff40ffff
> color #1 #0096ffff
> show #!2 models
> hide #!5 models
> hide #!7 models
> select : 21h, g39, zmr
111 atoms, 115 bonds, 1 pseudobond, 4 residues, 5 models selected
> hbonds sel & #!1-2 reveal true
33 hydrogen bonds found
> hbonds sel & #!1-2 reveal true
33 hydrogen bonds found
> hbonds sel & #!1-2 reveal true
33 hydrogen bonds found
> hbonds sel & #!1-2 reveal true
33 hydrogen bonds found
> color #2 #929292ff
> select clear
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hide #!1 models
> ui mousemode right select
> select clear
[Repeated 1 time(s)]
> select #2/D:481@O3
1 atom, 1 residue, 1 model selected
> select clear
> select #2/D:481@O3
1 atom, 1 residue, 1 model selected
> select clear
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> label (#!2 & sel) atoms attribute name
> select : O3, C11, O2
Nothing selected
> save /Users/gulhabib/Desktop/wt+21h.pdb
> open "/Users/gulhabib/Documents/CryoEM/3. Wt N1 plus 21h/6wt n1 fitting
> z-flip map Reuse in coot-0.pdb"
Chain information for 6wt n1 fitting z-flip map Reuse in coot-0.pdb #8
---
Chain | Description
A | No description available
3 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Computing secondary structure
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> ~label (#!2 & sel) atoms
> select # 8
3051 atoms, 3133 bonds, 1 pseudobond, 391 residues, 2 models selected
> select 151-156
Expected an objects specifier or a keyword
> select #8 151-156
Expected a keyword
> select : #8 151-156
Expected an objects specifier or a keyword
> select :151-156
271 atoms, 276 bonds, 30 residues, 5 models selected
> select #8 :151-156
55 atoms, 56 bonds, 6 residues, 1 model selected
> matchmaker #8 to #2
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 25.3.14 wt 21h.pdb, chain D (#2) with 6wt n1 fitting z-flip map
Reuse in coot-0.pdb, chain A (#8), sequence alignment score = 1960.5
RMSD between 387 pruned atom pairs is 0.536 angstroms; (across all 387 pairs:
0.536)
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hbonds sel & #!2 reveal true
15 hydrogen bonds found
> hbonds sel & #!2 reveal true
15 hydrogen bonds found
> hbonds sel & #!2 reveal true
15 hydrogen bonds found
> show #!1 models
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hbonds sel reveal true
38 hydrogen bonds found
> hide #!8 models
> show #!5 models
> select : 21h, g39
88 atoms, 92 bonds, 1 pseudobond, 3 residues, 4 models selected
> hbonds sel reveal true
85 hydrogen bonds found
> hbonds sel reveal true
85 hydrogen bonds found
> color #5 #8efa00ff
> color #5 #ff40ffff
> hide #!1 models
> hide #!2 models
> show #!1 models
> show #!2 models
> hide #!1 models
> hide #!2 models
> open "/Users/gulhabib/Documents/CryoEM/structure1/Oseltamivir reference
> pdb.pdb"
Chain information for Oseltamivir reference pdb.pdb #9
---
Chain | Description
H | No description available
Computing secondary structure
> matchmaker #9 to #5
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 3clo H275Y+oseltamivr reference .pdb, chain A (#5) with Oseltamivir
reference pdb.pdb, chain H (#9), sequence alignment score = 2021.8
RMSD between 385 pruned atom pairs is 0.267 angstroms; (across all 385 pairs:
0.267)
> select : g39
40 atoms, 40 bonds, 2 residues, 2 models selected
> hbonds sel reveal true
105 hydrogen bonds found
> hbonds sel reveal true
105 hydrogen bonds found
> hbonds sel reveal true
105 hydrogen bonds found
> color #5 #00fdffff
> color #5 #ff40ffff
> color #9 #76d6ffff
> color #9 #7a81ffff
> select : 274, 275, 276, 277
252 atoms, 260 bonds, 1 pseudobond, 24 residues, 7 models selected
> show (#9#!5 & sel) target ab
> hide #9 models
> show #9 models
> hide #!5 models
> show #!5 models
> hide #9 models
> show #9 models
> hide #!5 models
> show #!1 models
> show #!2 models
> hide #3 models
> hide #9 models
> show #3 models
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hbonds sel reveal true
41 hydrogen bonds found
> color #2 #73fa79ff
> hide #!1 models
> hide #!2 models
> show #!1 models
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hbonds sel & #!1 reveal true
25 hydrogen bonds found
> hbonds sel & #!1 reveal true
25 hydrogen bonds found
> show #!2 models
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hbonds sel reveal true
41 hydrogen bonds found
> show #9 models
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hbonds sel reveal true
41 hydrogen bonds found
> hbonds sel reveal true
41 hydrogen bonds found
> hide #3 models
> hide #!2 models
> hide #!1 models
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> show #!8 models
> hide #9 models
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> select ::name="LIG"
63 atoms, 65 bonds, 1 residue, 1 model selected
> hbonds sel reveal true
32 hydrogen bonds found
> hbonds sel reveal true
32 hydrogen bonds found
> show #3 models
> show #9 models
> show #!5 models
> hide #!8 models
> select ::name="G39"
40 atoms, 40 bonds, 2 residues, 2 models selected
> hide #!5 models
> show #!5 models
> hbonds sel reveal true
105 hydrogen bonds found
> hide #9 models
> hide #!5 models
> show #!2 models
> show #!1 models
> hide #3 models
> select add #2
3101 atoms, 3195 bonds, 395 residues, 4 models selected
> select add #1
6164 atoms, 6342 bonds, 788 residues, 7 models selected
> hide (#!1-2 & sel) target a
> cartoon (#!1-2 & sel)
> select : 343, 344, 334, 335, 388, 262, 257, 294, 298
325 atoms, 285 bonds, 47 residues, 6 models selected
> show (#!1-2 & sel) target ab
> label (#!1-2 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> cartoon hide (#!1-2 & sel)
> select : 274-300
1312 atoms, 1354 bonds, 1 pseudobond, 162 residues, 7 models selected
> show (#!1-2 & sel) target ab
> cartoon hide (#!1-2 & sel)
> select add #2
4155 atoms, 4282 bonds, 1 pseudobond, 528 residues, 9 models selected
> select add #1
6998 atoms, 7202 bonds, 1 pseudobond, 894 residues, 10 models selected
> preset "initial styles" sticks
Using preset: Initial Styles / Sticks
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> cartoon (#!1-2 & sel)
> hide (#!1-2 & sel) target a
> show #9 models
> select add #9
9763 atoms, 10044 bonds, 9 pseudobonds, 1253 residues, 11 models selected
> hide (#9#!1-2 & sel) target a
> cartoon (#9#!1-2 & sel)
> show #!5 models
> hide (#9#!1-2,5 & sel) target a
> cartoon (#9#!1-2,5 & sel)
> hide (#9#!1-2,5 & sel) target a
> select add #5
12529 atoms, 12885 bonds, 21 pseudobonds, 1613 residues, 13 models selected
> hide (#9#!1-2,5 & sel) target a
> cartoon hide (#9#!1-2,5 & sel)
> cartoon (#9#!1-2,5 & sel)
> save "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/edited/All 21h and
> Oseltamivir reference (wt).cxs"
——— End of log from Thu Mar 20 11:56:54 2025 ———
opened ChimeraX session
> open "/Users/gulhabib/Documents/CryoEM/structure1/3. H275Y apo.pdb"
Chain information for 3. H275Y apo.pdb #10
---
Chain | Description
D | No description available
3 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Computing secondary structure
> matchmaker #10 to #1
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 25.3.14 275Y 21h.pdb, chain D (#1) with 3. H275Y apo.pdb, chain D
(#10), sequence alignment score = 2032.9
RMSD between 387 pruned atom pairs is 0.312 angstroms; (across all 387 pairs:
0.312)
> hide #9 models
> hide #!5 models
> select : 344
62 atoms, 58 bonds, 7 residues, 7 models selected
> show (#10#!1-2 & sel) target ab
> save "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/edited/All 21h and
> Oseltamivir reference (wt).cxs"
——— End of log from Thu Mar 20 14:14:14 2025 ———
opened ChimeraX session
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> show (#!1-2 & sel) target ab
> save "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/edited/All 21h and
> Oseltamivir reference (wt).cxs"
——— End of log from Thu Mar 20 16:03:03 2025 ———
opened ChimeraX session
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> ui tool show "Cage Builder"
> ui tool show "Crystal Contacts"
> ui tool show "Download DICOM"
> ui tool show "DICOM Browser"
> ui tool show "Find Cavities"
> kvfinder #1
23 cavities found for 25.3.14 275Y 21h.pdb #1
25.3.14 275Y 21h.pdb Cavities
---
ID | | Volume | Area | Points
1.2.14 | | 559.44 | 439.97 | 2590
1.2.7 | | 151.85 | 143.35 | 703
1.2.11 | | 108 | 149.87 | 500
1.2.2 | | 87.26 | 125.45 | 404
1.2.10 | | 71.06 | 104.04 | 329
1.2.4 | | 56.38 | 75.88 | 261
1.2.20 | | 51.41 | 58.92 | 238
1.2.19 | | 46.66 | 69.05 | 216
1.2.12 | | 43.2 | 59.01 | 200
1.2.16 | | 39.1 | 60.87 | 181
1.2.22 | | 20.52 | 35.89 | 95
1.2.3 | | 19.22 | 35.47 | 89
1.2.5 | | 17.71 | 26.72 | 82
1.2.17 | | 16.85 | 32.3 | 78
1.2.18 | | 16.85 | 32.3 | 78
1.2.13 | | 15.98 | 25.9 | 74
1.2.6 | | 12.31 | 29.54 | 57
1.2.15 | | 12.31 | 29.54 | 57
1.2.1 | | 10.8 | 20.7 | 50
1.2.21 | | 8.42 | 14.48 | 39
1.2.23 | | 7.34 | 14.56 | 34
1.2.9 | | 7.13 | 14.78 | 33
1.2.8 | | 6.48 | 11.09 | 30
Populating font family aliases took 108 ms. Replace uses of missing font
family "Times" with one that exists to avoid this cost.
> view #1.2.14 @ zoom 0.75
moved plane near -36.35364076575426 [-0.10285594 0.32396999 0.94045948]
moved plane far -36.35364076575426 [-0.10285594 0.32396999 0.94045948]
> surface #1.2
> transparency #1.2 50
> ~surface #1.2
> surface #1.2.14
"Nearby" atom/residue distance not valid
> select clear
> ~select #!1.2.14
Nothing selected
> select #!1.2.14
2590 atoms, 1 residue, 1 model selected
> ~select #!1.2.14
1 model selected
> select #!1.2.14
2590 atoms, 1 residue, 1 model selected
> ~select #!1.2.14
1 model selected
> view #1
> view #!1.2.14 @ zoom 0.75
moved plane near -35.95893216622736 [0.00831787 0.44848518 0.89375152]
moved plane far -35.95893216622736 [0.00831787 0.44848518 0.89375152]
> ~surface #1.2
[Repeated 1 time(s)]
> surface #!1.2.14
> select #!1.2.14
2590 atoms, 1 residue, 1 model selected
Error processing trigger "setting changed":
"Nearby" atom/residue distance not valid
[Repeated 1 time(s)]
> view #!1.2.7 @ zoom 0.75
moved plane near -23.122196482218655 [0.00831787 0.44848518 0.89375152]
moved plane far -23.122196482218655 [0.00831787 0.44848518 0.89375152]
> ~surface #1.2
> surface #!1.2.7
"Nearby" atom/residue distance not valid
> view #1
> ~surface #1.2
> ~select #!1.2.7
2590 atoms, 1 residue, 2 models selected
Error processing trigger "setting changed":
"Nearby" atom/residue distance not valid
[Repeated 1 time(s)]
> ~surface #1.2
> view #!1.2.14 @ zoom 0.75
moved plane near -35.95893216622736 [0.00831787 0.44848518 0.89375152]
moved plane far -35.95893216622736 [0.00831787 0.44848518 0.89375152]
> ~surface #1.2
> surface #!1.2.14
> select #!1.2.14
2590 atoms, 1 residue, 1 model selected
Error processing trigger "setting changed":
"Nearby" atom/residue distance not valid
[Repeated 1 time(s)]
> hide #10 models
> hide surfaces
> hide cavity
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> hide cavities
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> hide cavity 14
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> hide cavity 14 #1.2.14
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> surface hidePatches (#!1.2.14 & sel)
> ui tool show "Find Cavities"
> kvfinder #1
23 cavities found for 25.3.14 275Y 21h.pdb #!1
25.3.14 275Y 21h.pdb Cavities
---
ID | | Volume | Area | Points
1.3.14 | | 559.44 | 439.97 | 2590
1.3.7 | | 151.85 | 143.35 | 703
1.3.11 | | 108 | 149.87 | 500
1.3.2 | | 87.26 | 125.45 | 404
1.3.10 | | 71.06 | 104.04 | 329
1.3.4 | | 56.38 | 75.88 | 261
1.3.20 | | 51.41 | 58.92 | 238
1.3.19 | | 46.66 | 69.05 | 216
1.3.12 | | 43.2 | 59.01 | 200
1.3.16 | | 39.1 | 60.87 | 181
1.3.22 | | 20.52 | 35.89 | 95
1.3.3 | | 19.22 | 35.47 | 89
1.3.5 | | 17.71 | 26.72 | 82
1.3.17 | | 16.85 | 32.3 | 78
1.3.18 | | 16.85 | 32.3 | 78
1.3.13 | | 15.98 | 25.9 | 74
1.3.6 | | 12.31 | 29.54 | 57
1.3.15 | | 12.31 | 29.54 | 57
1.3.1 | | 10.8 | 20.7 | 50
1.3.21 | | 8.42 | 14.48 | 39
1.3.23 | | 7.34 | 14.56 | 34
1.3.9 | | 7.13 | 14.78 | 33
1.3.8 | | 6.48 | 11.09 | 30
> view #1.3.14 @ zoom 0.75
moved plane near -41.61070294064325 [-0.36948623 0.69372777 0.61824075]
moved plane far -41.61070294064325 [-0.36948623 0.69372777 0.61824075]
> surface #1.3
> transparency #1.3 50
> ~surface #1.3
> surface #1.3.14
"Nearby" atom/residue distance not valid
> ui tool show "Find Cavities"
> kvfinder #1
23 cavities found for 25.3.14 275Y 21h.pdb #!1
25.3.14 275Y 21h.pdb Cavities
---
ID | | Volume | Area | Points
1.4.14 | | 559.44 | 439.97 | 2590
1.4.7 | | 151.85 | 143.35 | 703
1.4.11 | | 108 | 149.87 | 500
1.4.2 | | 87.26 | 125.45 | 404
1.4.10 | | 71.06 | 104.04 | 329
1.4.4 | | 56.38 | 75.88 | 261
1.4.20 | | 51.41 | 58.92 | 238
1.4.19 | | 46.66 | 69.05 | 216
1.4.12 | | 43.2 | 59.01 | 200
1.4.16 | | 39.1 | 60.87 | 181
1.4.22 | | 20.52 | 35.89 | 95
1.4.3 | | 19.22 | 35.47 | 89
1.4.5 | | 17.71 | 26.72 | 82
1.4.17 | | 16.85 | 32.3 | 78
1.4.18 | | 16.85 | 32.3 | 78
1.4.13 | | 15.98 | 25.9 | 74
1.4.6 | | 12.31 | 29.54 | 57
1.4.15 | | 12.31 | 29.54 | 57
1.4.1 | | 10.8 | 20.7 | 50
1.4.21 | | 8.42 | 14.48 | 39
1.4.23 | | 7.34 | 14.56 | 34
1.4.9 | | 7.13 | 14.78 | 33
1.4.8 | | 6.48 | 11.09 | 30
> view #1.4.7 @ zoom 0.75
moved plane near -26.589108837249864 [-0.36948623 0.69372777 0.61824075]
moved plane far -26.589108837249864 [-0.36948623 0.69372777 0.61824075]
> surface #1.4
> transparency #1.4 50
> ~surface #1.4
> surface #1.4.7
"Nearby" atom/residue distance not valid
Error processing trigger "setting changed":
"Nearby" atom/residue distance not valid
[Repeated 11 time(s)]
> view #!1.4.7,11 @ zoom 0.75
moved plane near -44.784490993367626 [-0.36948623 0.69372777 0.61824075]
moved plane far -44.784490993367626 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7,11
> select #!1.4.7,11
1203 atoms, 2 residues, 2 models selected
> view #!1.4.2,7,11 @ zoom 0.75
moved plane near -54.97812148067638 [-0.36948623 0.69372777 0.61824075]
moved plane far -54.97812148067638 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,7,11
> select #!1.4.2,7,11
1607 atoms, 3 residues, 3 models selected
> view #!1.4.2,7,10-11 @ zoom 0.75
moved plane near -58.95585885504036 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.95585885504036 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,7,10-11
> select #!1.4.2,7,10-11
1936 atoms, 4 residues, 4 models selected
> view #!1.4.2,4,7,10-11 @ zoom 0.75
moved plane near -58.95585885504036 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.95585885504036 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4,7,10-11
> select #!1.4.2,4,7,10-11
2197 atoms, 5 residues, 5 models selected
> view #!1.4.2,4,7,10-11,20 @ zoom 0.75
moved plane near -66.05744381045027 [-0.36948623 0.69372777 0.61824075]
moved plane far -66.05744381045027 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4,7,10-11,20
> select #!1.4.2,4,7,10-11,20
2435 atoms, 6 residues, 6 models selected
> view #!1.4.2,4,7,10-11,19-20 @ zoom 0.75
moved plane near -67.806967071999 [-0.36948623 0.69372777 0.61824075]
moved plane far -67.806967071999 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4,7,10-11,19-20
> select #!1.4.2,4,7,10-11,19-20
2651 atoms, 7 residues, 7 models selected
> view #!1.4.2,4,7,10-12,19-20 @ zoom 0.75
moved plane near -68.14409395312356 [-0.36948623 0.69372777 0.61824075]
moved plane far -68.14409395312356 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4,7,10-12,19-20
> select #!1.4.2,4,7,10-12,19-20
2851 atoms, 8 residues, 8 models selected
> view #!1.4.2,4,7,10-12,16,19-20 @ zoom 0.75
moved plane near -68.48875791151085 [-0.36948623 0.69372777 0.61824075]
moved plane far -68.48875791151085 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4,7,10-12,16,19-20
> select #!1.4.2,4,7,10-12,16,19-20
3032 atoms, 9 residues, 9 models selected
> view #!1.4.2,4,7,10-12,16,19-20,22 @ zoom 0.75
moved plane near -70.8250400608607 [-0.36948623 0.69372777 0.61824075]
moved plane far -70.8250400608607 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4,7,10-12,16,19-20,22
> select #!1.4.2,4,7,10-12,16,19-20,22
3127 atoms, 10 residues, 10 models selected
> view #!1.4.2-4,7,10-12,16,19-20,22 @ zoom 0.75
moved plane near -70.8250400608607 [-0.36948623 0.69372777 0.61824075]
moved plane far -70.8250400608607 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-4,7,10-12,16,19-20,22
> select #!1.4.2-4,7,10-12,16,19-20,22
3216 atoms, 11 residues, 11 models selected
> view #!1.4.2-5,7,10-12,16,19-20,22 @ zoom 0.75
moved plane near -71.9084392890733 [-0.36948623 0.69372777 0.61824075]
moved plane far -71.9084392890733 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7,10-12,16,19-20,22
> select #!1.4.2-5,7,10-12,16,19-20,22
3298 atoms, 12 residues, 12 models selected
> view #!1.4.2-5,7,10-12,16,18-20,22 @ zoom 0.75
moved plane near -71.9084392890733 [-0.36948623 0.69372777 0.61824075]
moved plane far -71.9084392890733 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7,10-12,16,18-20,22
> select #!1.4.2-5,7,10-12,16,18-20,22
3376 atoms, 13 residues, 13 models selected
> view #!1.4.2-5,7,10-12,16-20,22 @ zoom 0.75
moved plane near -71.9084392890733 [-0.36948623 0.69372777 0.61824075]
moved plane far -71.9084392890733 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7,10-12,16-20,22
> select #!1.4.2-5,7,10-12,16-20,22
3454 atoms, 14 residues, 14 models selected
> view #!1.4.2-5,7,10-13,16-20,22 @ zoom 0.75
moved plane near -71.9084392890733 [-0.36948623 0.69372777 0.61824075]
moved plane far -71.9084392890733 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7,10-13,16-20,22
> select #!1.4.2-5,7,10-13,16-20,22
3528 atoms, 15 residues, 15 models selected
> view #!1.4.2-5,7,10-13,15-20,22 @ zoom 0.75
moved plane near -72.13548970026353 [-0.36948623 0.69372777 0.61824075]
moved plane far -72.13548970026353 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7,10-13,15-20,22
> select #!1.4.2-5,7,10-13,15-20,22
3585 atoms, 16 residues, 16 models selected
> view #!1.4.2-7,10-13,15-20,22 @ zoom 0.75
moved plane near -72.13548970026353 [-0.36948623 0.69372777 0.61824075]
moved plane far -72.13548970026353 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-7,10-13,15-20,22
> select #!1.4.2-7,10-13,15-20,22
3642 atoms, 17 residues, 17 models selected
> view #!1.4.1-7,10-13,15-20,22 @ zoom 0.75
moved plane near -77.63871688108838 [-0.36948623 0.69372777 0.61824075]
moved plane far -77.63871688108838 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.1-7,10-13,15-20,22
> select #!1.4.1-7,10-13,15-20,22
3692 atoms, 18 residues, 18 models selected
> view #!1.4.1-7,10-13,15-22 @ zoom 0.75
moved plane near -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
moved plane far -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.1-7,10-13,15-22
> select #!1.4.1-7,10-13,15-22
3731 atoms, 19 residues, 19 models selected
> view #!1.4.1-7,10-13,15-23 @ zoom 0.75
moved plane near -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
moved plane far -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.1-7,10-13,15-23
> select #!1.4.1-7,10-13,15-23
3765 atoms, 20 residues, 20 models selected
> view #!1.4.1-7,9-13,15-23 @ zoom 0.75
moved plane near -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
moved plane far -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.1-7,9-13,15-23
> select #!1.4.1-7,9-13,15-23
3798 atoms, 21 residues, 21 models selected
> view #!1.4.1-13,15-23 @ zoom 0.75
moved plane near -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
moved plane far -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.1-13,15-23
> select #!1.4.1-13,15-23
3828 atoms, 22 residues, 22 models selected
> view #!1.4.1-7,9-13,15-23 @ zoom 0.75
moved plane near -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
moved plane far -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.1-7,9-13,15-23
> select #!1.4.1-7,9-13,15-23
3798 atoms, 21 residues, 21 models selected
> view #!1.4.1-13,15-23 @ zoom 0.75
moved plane near -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
moved plane far -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.1-13,15-23
> select #!1.4.1-13,15-23
3828 atoms, 22 residues, 22 models selected
> surface hidePatches (#!1.4.1-13,15-23 & sel)
> cartoon hide (#!1.4.1-13,15-23 & sel)
> transparency (#!1.4.1-13,15-23 & sel) 100
> delete atoms (#!1.4.1-13,15-23 & sel)
> view #!1.4.2-13,15-23 @ zoom 0.75
moved plane near -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-13,15-23
> select #!1.4.2-13,15-23
3778 atoms, 21 residues, 21 models selected
> view #!1.4.5 @ zoom 0.75
moved plane near -16.38038113541874 [-0.36948623 0.69372777 0.61824075]
moved plane far -16.38038113541874 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.5
> select #!1.4.5
82 atoms, 1 residue, 1 model selected
> view #!1.4.2,5 @ zoom 0.75
moved plane near -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
moved plane far -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,5
> select #!1.4.2,5
486 atoms, 2 residues, 2 models selected
> view #!1.4.2,4-5 @ zoom 0.75
moved plane near -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
moved plane far -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5
> select #!1.4.2,4-5
747 atoms, 3 residues, 3 models selected
> view #!1.4.2,4-5,12 @ zoom 0.75
moved plane near -43.154918912080575 [-0.36948623 0.69372777 0.61824075]
moved plane far -43.154918912080575 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,12
> select #!1.4.2,4-5,12
947 atoms, 4 residues, 4 models selected
> view #!1.4.2,4-5,12,20 @ zoom 0.75
moved plane near -55.8289843108598 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.8289843108598 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,12,20
> select #!1.4.2,4-5,12,20
1185 atoms, 5 residues, 5 models selected
> view #!1.4.2,4-5,12,20,23 @ zoom 0.75
moved plane near -56.614599460854436 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.614599460854436 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,12,20,23
> select #!1.4.2,4-5,12,20,23
1219 atoms, 6 residues, 6 models selected
> view #!1.4.2,4-5,12,15,20,23 @ zoom 0.75
moved plane near -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
moved plane far -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,12,15,20,23
> select #!1.4.2,4-5,12,15,20,23
1276 atoms, 7 residues, 7 models selected
> view #!1.4.2,4-5,11-12,15,20,23 @ zoom 0.75
moved plane near -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
moved plane far -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,11-12,15,20,23
> select #!1.4.2,4-5,11-12,15,20,23
1776 atoms, 8 residues, 8 models selected
> view #!1.4.2,4-5,11-12,15,19-20,23 @ zoom 0.75
moved plane near -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
moved plane far -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,11-12,15,19-20,23
> select #!1.4.2,4-5,11-12,15,19-20,23
1992 atoms, 9 residues, 9 models selected
> view #!1.4.2,4-5,11-12,15,19-20,22-23 @ zoom 0.75
moved plane near -62.50503344035409 [-0.36948623 0.69372777 0.61824075]
moved plane far -62.50503344035409 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,11-12,15,19-20,22-23
> select #!1.4.2,4-5,11-12,15,19-20,22-23
2087 atoms, 10 residues, 10 models selected
> view #!1.4.2,4-5,8,11-12,15,19-20,22-23 @ zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8,11-12,15,19-20,22-23
> select #!1.4.2,4-5,8,11-12,15,19-20,22-23
2117 atoms, 11 residues, 11 models selected
> view #!1.4.2,4-5,8,10-12,15,19-20,22-23 @ zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8,10-12,15,19-20,22-23
> select #!1.4.2,4-5,8,10-12,15,19-20,22-23
2446 atoms, 12 residues, 12 models selected
> view #!1.4.2,4-5,8-12,15,19-20,22-23 @ zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-12,15,19-20,22-23
> select #!1.4.2,4-5,8-12,15,19-20,22-23
2479 atoms, 13 residues, 13 models selected
> view #!1.4.2,4-5,8-13,15,19-20,22-23 @ zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-13,15,19-20,22-23
> select #!1.4.2,4-5,8-13,15,19-20,22-23
2553 atoms, 14 residues, 14 models selected
> view #!1.4.2,4-5,8-13,15-16,19-20,22-23 @ zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-13,15-16,19-20,22-23
> select #!1.4.2,4-5,8-13,15-16,19-20,22-23
2734 atoms, 15 residues, 15 models selected
> view #!1.4.2,4-5,8-13,15-17,19-20,22-23 @ zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-13,15-17,19-20,22-23
> select #!1.4.2,4-5,8-13,15-17,19-20,22-23
2812 atoms, 16 residues, 16 models selected
> view #!1.4.2,4-5,8-13,15-20,22-23 @ zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-13,15-20,22-23
> select #!1.4.2,4-5,8-13,15-20,22-23
2890 atoms, 17 residues, 17 models selected
> view #!1.4.2-5,8-13,15-20,22-23 @ zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,8-13,15-20,22-23
> select #!1.4.2-5,8-13,15-20,22-23
2979 atoms, 18 residues, 18 models selected
> view #!1.4.2-5,8-13,15-23 @ zoom 0.75
moved plane near -64.2146076891873 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.2146076891873 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,8-13,15-23
> select #!1.4.2-5,8-13,15-23
3018 atoms, 19 residues, 19 models selected
> view #!1.4.2-5,7-13,15-23 @ zoom 0.75
moved plane near -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-13,15-23
> select #!1.4.2-5,7-13,15-23
3721 atoms, 20 residues, 20 models selected
> view #!1.4.2-13,15-23 @ zoom 0.75
moved plane near -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-13,15-23
> select #!1.4.2-13,15-23
3778 atoms, 21 residues, 21 models selected
> view #!1.4.2-13,15-23 @ zoom 0.75
moved plane near -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-13,15-23
> select #!1.4.2-13,15-23
3778 atoms, 21 residues, 21 models selected
> view #!1.4.2-12,15-23 @ zoom 0.75
moved plane near -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-12,15-23
> select #!1.4.2-12,15-23
3704 atoms, 20 residues, 20 models selected
> view #!1.4.5 @ zoom 0.75
moved plane near -16.38038113541874 [-0.36948623 0.69372777 0.61824075]
moved plane far -16.38038113541874 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.5
> select #!1.4.5
82 atoms, 1 residue, 1 model selected
> view #!1.4.2,5 @ zoom 0.75
moved plane near -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
moved plane far -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,5
> select #!1.4.2,5
486 atoms, 2 residues, 2 models selected
> view #!1.4.2,4-5 @ zoom 0.75
moved plane near -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
moved plane far -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5
> select #!1.4.2,4-5
747 atoms, 3 residues, 3 models selected
> view #!1.4.2,4-5,12 @ zoom 0.75
moved plane near -43.154918912080575 [-0.36948623 0.69372777 0.61824075]
moved plane far -43.154918912080575 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,12
> select #!1.4.2,4-5,12
947 atoms, 4 residues, 4 models selected
> view #!1.4.2,4-5,12,20 @ zoom 0.75
moved plane near -55.8289843108598 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.8289843108598 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,12,20
> select #!1.4.2,4-5,12,20
1185 atoms, 5 residues, 5 models selected
> view #!1.4.2,4-5,12,20,23 @ zoom 0.75
moved plane near -56.614599460854436 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.614599460854436 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,12,20,23
> select #!1.4.2,4-5,12,20,23
1219 atoms, 6 residues, 6 models selected
> view #!1.4.2,4-5,12,15,20,23 @ zoom 0.75
moved plane near -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
moved plane far -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,12,15,20,23
> select #!1.4.2,4-5,12,15,20,23
1276 atoms, 7 residues, 7 models selected
> view #!1.4.2,4-5,11-12,15,20,23 @ zoom 0.75
moved plane near -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
moved plane far -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,11-12,15,20,23
> select #!1.4.2,4-5,11-12,15,20,23
1776 atoms, 8 residues, 8 models selected
> view #!1.4.2,4-5,11-12,15,19-20,23 @ zoom 0.75
moved plane near -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
moved plane far -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,11-12,15,19-20,23
> select #!1.4.2,4-5,11-12,15,19-20,23
1992 atoms, 9 residues, 9 models selected
> view #!1.4.2,4-5,11-12,15,19-20,22-23 @ zoom 0.75
moved plane near -62.50503344035409 [-0.36948623 0.69372777 0.61824075]
moved plane far -62.50503344035409 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,11-12,15,19-20,22-23
> select #!1.4.2,4-5,11-12,15,19-20,22-23
2087 atoms, 10 residues, 10 models selected
> view #!1.4.2,4-5,8,11-12,15,19-20,22-23 @ zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8,11-12,15,19-20,22-23
> select #!1.4.2,4-5,8,11-12,15,19-20,22-23
2117 atoms, 11 residues, 11 models selected
> view #!1.4.2,4-5,8,10-12,15,19-20,22-23 @ zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8,10-12,15,19-20,22-23
> select #!1.4.2,4-5,8,10-12,15,19-20,22-23
2446 atoms, 12 residues, 12 models selected
> view #!1.4.2,4-5,8-12,15,19-20,22-23 @ zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-12,15,19-20,22-23
> select #!1.4.2,4-5,8-12,15,19-20,22-23
2479 atoms, 13 residues, 13 models selected
> view #!1.4.2,4-5,8-12,15-16,19-20,22-23 @ zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-12,15-16,19-20,22-23
> select #!1.4.2,4-5,8-12,15-16,19-20,22-23
2660 atoms, 14 residues, 14 models selected
> view #!1.4.2,4-5,8-12,15-17,19-20,22-23 @ zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-12,15-17,19-20,22-23
> select #!1.4.2,4-5,8-12,15-17,19-20,22-23
2738 atoms, 15 residues, 15 models selected
> view #!1.4.2,4-5,8-12,15-20,22-23 @ zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-12,15-20,22-23
> select #!1.4.2,4-5,8-12,15-20,22-23
2816 atoms, 16 residues, 16 models selected
> view #!1.4.2-5,8-12,15-20,22-23 @ zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,8-12,15-20,22-23
> select #!1.4.2-5,8-12,15-20,22-23
2905 atoms, 17 residues, 17 models selected
> view #!1.4.2-5,8-12,15-23 @ zoom 0.75
moved plane near -64.2146076891873 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.2146076891873 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,8-12,15-23
> select #!1.4.2-5,8-12,15-23
2944 atoms, 18 residues, 18 models selected
> view #!1.4.2-5,7-12,15-23 @ zoom 0.75
moved plane near -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-12,15-23
> select #!1.4.2-5,7-12,15-23
3647 atoms, 19 residues, 19 models selected
> view #!1.4.2-12,15-23 @ zoom 0.75
moved plane near -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-12,15-23
> select #!1.4.2-12,15-23
3704 atoms, 20 residues, 20 models selected
> view #!1.4.2-12,15-23 @ zoom 0.75
moved plane near -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-12,15-23
> select #!1.4.2-12,15-23
3704 atoms, 20 residues, 20 models selected
> view #!1.4.2-12,16-23 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-12,16-23
> select #!1.4.2-12,16-23
3647 atoms, 19 residues, 19 models selected
> view #!1.4.5 @ zoom 0.75
moved plane near -16.38038113541874 [-0.36948623 0.69372777 0.61824075]
moved plane far -16.38038113541874 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.5
> select #!1.4.5
82 atoms, 1 residue, 1 model selected
> view #!1.4.2,5 @ zoom 0.75
moved plane near -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
moved plane far -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,5
> select #!1.4.2,5
486 atoms, 2 residues, 2 models selected
> view #!1.4.2,4-5 @ zoom 0.75
moved plane near -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
moved plane far -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5
> select #!1.4.2,4-5
747 atoms, 3 residues, 3 models selected
> view #!1.4.2,4-5,23 @ zoom 0.75
moved plane near -51.991232148105574 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.991232148105574 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,23
> select #!1.4.2,4-5,23
781 atoms, 4 residues, 4 models selected
> view #!1.4.2,4-5,12,23 @ zoom 0.75
moved plane near -52.81054574147939 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.81054574147939 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,12,23
> select #!1.4.2,4-5,12,23
981 atoms, 5 residues, 5 models selected
> view #!1.4.2,4-5,12,20,23 @ zoom 0.75
moved plane near -56.614599460854436 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.614599460854436 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,12,20,23
> select #!1.4.2,4-5,12,20,23
1219 atoms, 6 residues, 6 models selected
> view #!1.4.2,4-5,11-12,20,23 @ zoom 0.75
moved plane near -59.13219292434028 [-0.36948623 0.69372777 0.61824075]
moved plane far -59.13219292434028 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,11-12,20,23
> select #!1.4.2,4-5,11-12,20,23
1719 atoms, 7 residues, 7 models selected
> view #!1.4.2,4-5,11-12,19-20,23 @ zoom 0.75
moved plane near -60.71926945440231 [-0.36948623 0.69372777 0.61824075]
moved plane far -60.71926945440231 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,11-12,19-20,23
> select #!1.4.2,4-5,11-12,19-20,23
1935 atoms, 8 residues, 8 models selected
> view #!1.4.2,4-5,11-12,19-20,22-23 @ zoom 0.75
moved plane near -62.29907559860302 [-0.36948623 0.69372777 0.61824075]
moved plane far -62.29907559860302 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,11-12,19-20,22-23
> select #!1.4.2,4-5,11-12,19-20,22-23
2030 atoms, 9 residues, 9 models selected
> view #!1.4.2,4-5,8,11-12,19-20,22-23 @ zoom 0.75
moved plane near -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8,11-12,19-20,22-23
> select #!1.4.2,4-5,8,11-12,19-20,22-23
2060 atoms, 10 residues, 10 models selected
> view #!1.4.2,4-5,8,10-12,19-20,22-23 @ zoom 0.75
moved plane near -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8,10-12,19-20,22-23
> select #!1.4.2,4-5,8,10-12,19-20,22-23
2389 atoms, 11 residues, 11 models selected
> view #!1.4.2,4-5,8-12,19-20,22-23 @ zoom 0.75
moved plane near -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-12,19-20,22-23
> select #!1.4.2,4-5,8-12,19-20,22-23
2422 atoms, 12 residues, 12 models selected
> view #!1.4.2,4-5,8-12,16,19-20,22-23 @ zoom 0.75
moved plane near -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-12,16,19-20,22-23
> select #!1.4.2,4-5,8-12,16,19-20,22-23
2603 atoms, 13 residues, 13 models selected
> view #!1.4.2,4-5,8-12,16-17,19-20,22-23 @ zoom 0.75
moved plane near -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-12,16-17,19-20,22-23
> select #!1.4.2,4-5,8-12,16-17,19-20,22-23
2681 atoms, 14 residues, 14 models selected
> view #!1.4.2,4-5,8-12,16-20,22-23 @ zoom 0.75
moved plane near -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-12,16-20,22-23
> select #!1.4.2,4-5,8-12,16-20,22-23
2759 atoms, 15 residues, 15 models selected
> view #!1.4.2-5,8-12,16-20,22-23 @ zoom 0.75
moved plane near -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,8-12,16-20,22-23
> select #!1.4.2-5,8-12,16-20,22-23
2848 atoms, 16 residues, 16 models selected
> view #!1.4.2-5,8-12,16-23 @ zoom 0.75
moved plane near -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,8-12,16-23
> select #!1.4.2-5,8-12,16-23
2887 atoms, 17 residues, 17 models selected
> view #!1.4.2-5,7-12,16-23 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-12,16-23
> select #!1.4.2-5,7-12,16-23
3590 atoms, 18 residues, 18 models selected
> view #!1.4.2-12,16-23 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-12,16-23
> select #!1.4.2-12,16-23
3647 atoms, 19 residues, 19 models selected
> view #!1.4.2-12,16-23 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-12,16-23
> select #!1.4.2-12,16-23
3647 atoms, 19 residues, 19 models selected
> view #!1.4.2-9,11-12,16-23 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-9,11-12,16-23
> select #!1.4.2-9,11-12,16-23
3318 atoms, 18 residues, 18 models selected
> view #!1.4.11 @ zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @ zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.11,19,22 @ zoom 0.75
moved plane near -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
moved plane far -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19,22
> select #!1.4.11,19,22
811 atoms, 3 residues, 3 models selected
> view #!1.4.11,18-19,22 @ zoom 0.75
moved plane near -43.11452103715933 [-0.36948623 0.69372777 0.61824075]
moved plane far -43.11452103715933 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,18-19,22
> select #!1.4.11,18-19,22
889 atoms, 4 residues, 4 models selected
> view #!1.4.3,11,18-19,22 @ zoom 0.75
moved plane near -48.577857756738716 [-0.36948623 0.69372777 0.61824075]
moved plane far -48.577857756738716 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,11,18-19,22
> select #!1.4.3,11,18-19,22
978 atoms, 5 residues, 5 models selected
> view #!1.4.3,8,11,18-19,22 @ zoom 0.75
moved plane near -56.50978115131668 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.50978115131668 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,18-19,22
> select #!1.4.3,8,11,18-19,22
1008 atoms, 6 residues, 6 models selected
> view #!1.4.3,8,11,18-19,22-23 @ zoom 0.75
moved plane near -56.50980184330376 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.50980184330376 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,18-19,22-23
> select #!1.4.3,8,11,18-19,22-23
1042 atoms, 7 residues, 7 models selected
> view #!1.4.3,5,8,11,18-19,22-23 @ zoom 0.75
moved plane near -57.568890212715274 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.568890212715274 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,5,8,11,18-19,22-23
> select #!1.4.3,5,8,11,18-19,22-23
1124 atoms, 8 residues, 8 models selected
> view #!1.4.3,5,8,11,18-19,21-23 @ zoom 0.75
moved plane near -58.89471502839948 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.89471502839948 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,5,8,11,18-19,21-23
> select #!1.4.3,5,8,11,18-19,21-23
1163 atoms, 9 residues, 9 models selected
> view #!1.4.2-3,5,8,11,18-19,21-23 @ zoom 0.75
moved plane near -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,5,8,11,18-19,21-23
> select #!1.4.2-3,5,8,11,18-19,21-23
1567 atoms, 10 residues, 10 models selected
> view #!1.4.2-3,5,8,11,16,18-19,21-23 @ zoom 0.75
moved plane near -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,5,8,11,16,18-19,21-23
> select #!1.4.2-3,5,8,11,16,18-19,21-23
1748 atoms, 11 residues, 11 models selected
> view #!1.4.2-3,5,8-9,11,16,18-19,21-23 @ zoom 0.75
moved plane near -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,5,8-9,11,16,18-19,21-23
> select #!1.4.2-3,5,8-9,11,16,18-19,21-23
1781 atoms, 12 residues, 12 models selected
> view #!1.4.2-5,8-9,11,16,18-19,21-23 @ zoom 0.75
moved plane near -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,8-9,11,16,18-19,21-23
> select #!1.4.2-5,8-9,11,16,18-19,21-23
2042 atoms, 13 residues, 13 models selected
> view #!1.4.2-5,7-9,11,16,18-19,21-23 @ zoom 0.75
moved plane near -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-9,11,16,18-19,21-23
> select #!1.4.2-5,7-9,11,16,18-19,21-23
2745 atoms, 14 residues, 14 models selected
> view #!1.4.2-5,7-9,11,16-19,21-23 @ zoom 0.75
moved plane near -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-9,11,16-19,21-23
> select #!1.4.2-5,7-9,11,16-19,21-23
2823 atoms, 15 residues, 15 models selected
> view #!1.4.2-5,7-9,11-12,16-19,21-23 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-9,11-12,16-19,21-23
> select #!1.4.2-5,7-9,11-12,16-19,21-23
3023 atoms, 16 residues, 16 models selected
> view #!1.4.2-9,11-12,16-19,21-23 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-9,11-12,16-19,21-23
> select #!1.4.2-9,11-12,16-19,21-23
3080 atoms, 17 residues, 17 models selected
> view #!1.4.2-9,11-12,16-23 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-9,11-12,16-23
> select #!1.4.2-9,11-12,16-23
3318 atoms, 18 residues, 18 models selected
> view #!1.4.2-9,11-12,16-23 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-9,11-12,16-23
> select #!1.4.2-9,11-12,16-23
3318 atoms, 18 residues, 18 models selected
> view #!1.4.2-5,7-9,11-12,16-23 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-9,11-12,16-23
> select #!1.4.2-5,7-9,11-12,16-23
3261 atoms, 17 residues, 17 models selected
> view #!1.4.11 @ zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @ zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.11,19,22 @ zoom 0.75
moved plane near -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
moved plane far -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19,22
> select #!1.4.11,19,22
811 atoms, 3 residues, 3 models selected
> view #!1.4.11,18-19,22 @ zoom 0.75
moved plane near -43.11452103715933 [-0.36948623 0.69372777 0.61824075]
moved plane far -43.11452103715933 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,18-19,22
> select #!1.4.11,18-19,22
889 atoms, 4 residues, 4 models selected
> view #!1.4.3,11,18-19,22 @ zoom 0.75
moved plane near -48.577857756738716 [-0.36948623 0.69372777 0.61824075]
moved plane far -48.577857756738716 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,11,18-19,22
> select #!1.4.3,11,18-19,22
978 atoms, 5 residues, 5 models selected
> view #!1.4.3,8,11,18-19,22 @ zoom 0.75
moved plane near -56.50978115131668 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.50978115131668 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,18-19,22
> select #!1.4.3,8,11,18-19,22
1008 atoms, 6 residues, 6 models selected
> view #!1.4.3,8,11,18-19,22-23 @ zoom 0.75
moved plane near -56.50980184330376 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.50980184330376 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,18-19,22-23
> select #!1.4.3,8,11,18-19,22-23
1042 atoms, 7 residues, 7 models selected
> view #!1.4.3,5,8,11,18-19,22-23 @ zoom 0.75
moved plane near -57.568890212715274 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.568890212715274 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,5,8,11,18-19,22-23
> select #!1.4.3,5,8,11,18-19,22-23
1124 atoms, 8 residues, 8 models selected
> view #!1.4.3,5,8,11,18-19,21-23 @ zoom 0.75
moved plane near -58.89471502839948 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.89471502839948 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,5,8,11,18-19,21-23
> select #!1.4.3,5,8,11,18-19,21-23
1163 atoms, 9 residues, 9 models selected
> view #!1.4.2-3,5,8,11,18-19,21-23 @ zoom 0.75
moved plane near -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,5,8,11,18-19,21-23
> select #!1.4.2-3,5,8,11,18-19,21-23
1567 atoms, 10 residues, 10 models selected
> view #!1.4.2-3,5,8,11,16,18-19,21-23 @ zoom 0.75
moved plane near -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,5,8,11,16,18-19,21-23
> select #!1.4.2-3,5,8,11,16,18-19,21-23
1748 atoms, 11 residues, 11 models selected
> view #!1.4.2-3,5,7-8,11,16,18-19,21-23 @ zoom 0.75
moved plane near -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,5,7-8,11,16,18-19,21-23
> select #!1.4.2-3,5,7-8,11,16,18-19,21-23
2451 atoms, 12 residues, 12 models selected
> view #!1.4.2-5,7-8,11,16,18-19,21-23 @ zoom 0.75
moved plane near -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-8,11,16,18-19,21-23
> select #!1.4.2-5,7-8,11,16,18-19,21-23
2712 atoms, 13 residues, 13 models selected
> view #!1.4.2-5,7-8,11,16-19,21-23 @ zoom 0.75
moved plane near -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-8,11,16-19,21-23
> select #!1.4.2-5,7-8,11,16-19,21-23
2790 atoms, 14 residues, 14 models selected
> view #!1.4.2-5,7-8,11-12,16-19,21-23 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-8,11-12,16-19,21-23
> select #!1.4.2-5,7-8,11-12,16-19,21-23
2990 atoms, 15 residues, 15 models selected
> view #!1.4.2-5,7-9,11-12,16-19,21-23 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-9,11-12,16-19,21-23
> select #!1.4.2-5,7-9,11-12,16-19,21-23
3023 atoms, 16 residues, 16 models selected
> view #!1.4.2-5,7-9,11-12,16-23 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-9,11-12,16-23
> select #!1.4.2-5,7-9,11-12,16-23
3261 atoms, 17 residues, 17 models selected
> view #!1.4.2-5,7-9,11-12,16-23 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-9,11-12,16-23
> select #!1.4.2-5,7-9,11-12,16-23
3261 atoms, 17 residues, 17 models selected
> view #!1.4.2-5,7-8,11-12,16-23 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-8,11-12,16-23
> select #!1.4.2-5,7-8,11-12,16-23
3228 atoms, 16 residues, 16 models selected
> view #!1.4.11 @ zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @ zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.11,19,22 @ zoom 0.75
moved plane near -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
moved plane far -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19,22
> select #!1.4.11,19,22
811 atoms, 3 residues, 3 models selected
> view #!1.4.3,11,19,22 @ zoom 0.75
moved plane near -48.577857756738716 [-0.36948623 0.69372777 0.61824075]
moved plane far -48.577857756738716 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,11,19,22
> select #!1.4.3,11,19,22
900 atoms, 4 residues, 4 models selected
> view #!1.4.3,8,11,19,22 @ zoom 0.75
moved plane near -56.50978115131668 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.50978115131668 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,19,22
> select #!1.4.3,8,11,19,22
930 atoms, 5 residues, 5 models selected
> view #!1.4.3,8,11,19,22-23 @ zoom 0.75
moved plane near -56.50980184330376 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.50980184330376 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,19,22-23
> select #!1.4.3,8,11,19,22-23
964 atoms, 6 residues, 6 models selected
> view #!1.4.3,5,8,11,19,22-23 @ zoom 0.75
moved plane near -57.568890212715274 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.568890212715274 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,5,8,11,19,22-23
> select #!1.4.3,5,8,11,19,22-23
1046 atoms, 7 residues, 7 models selected
> view #!1.4.3,5,8,11,19,21-23 @ zoom 0.75
moved plane near -58.89471502839948 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.89471502839948 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,5,8,11,19,21-23
> select #!1.4.3,5,8,11,19,21-23
1085 atoms, 8 residues, 8 models selected
> view #!1.4.2-3,5,8,11,19,21-23 @ zoom 0.75
moved plane near -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,5,8,11,19,21-23
> select #!1.4.2-3,5,8,11,19,21-23
1489 atoms, 9 residues, 9 models selected
> view #!1.4.2-3,5,8,11,16,19,21-23 @ zoom 0.75
moved plane near -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,5,8,11,16,19,21-23
> select #!1.4.2-3,5,8,11,16,19,21-23
1670 atoms, 10 residues, 10 models selected
> view #!1.4.2-3,5,7-8,11,16,19,21-23 @ zoom 0.75
moved plane near -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,5,7-8,11,16,19,21-23
> select #!1.4.2-3,5,7-8,11,16,19,21-23
2373 atoms, 11 residues, 11 models selected
> view #!1.4.2-5,7-8,11,16,19,21-23 @ zoom 0.75
moved plane near -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-8,11,16,19,21-23
> select #!1.4.2-5,7-8,11,16,19,21-23
2634 atoms, 12 residues, 12 models selected
> view #!1.4.2-5,7-8,11,16-17,19,21-23 @ zoom 0.75
moved plane near -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-8,11,16-17,19,21-23
> select #!1.4.2-5,7-8,11,16-17,19,21-23
2712 atoms, 13 residues, 13 models selected
> view #!1.4.2-5,7-8,11-12,16-17,19,21-23 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-8,11-12,16-17,19,21-23
> select #!1.4.2-5,7-8,11-12,16-17,19,21-23
2912 atoms, 14 residues, 14 models selected
> view #!1.4.2-5,7-8,11-12,16-19,21-23 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-8,11-12,16-19,21-23
> select #!1.4.2-5,7-8,11-12,16-19,21-23
2990 atoms, 15 residues, 15 models selected
> view #!1.4.2-5,7-8,11-12,16-23 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-8,11-12,16-23
> select #!1.4.2-5,7-8,11-12,16-23
3228 atoms, 16 residues, 16 models selected
> view #!1.4.2-5,7-8,11-12,16-23 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-8,11-12,16-23
> select #!1.4.2-5,7-8,11-12,16-23
3228 atoms, 16 residues, 16 models selected
> view #!1.4.2-4,7-8,11-12,16-23 @ zoom 0.75
moved plane near -63.58275918008911 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.58275918008911 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-4,7-8,11-12,16-23
> select #!1.4.2-4,7-8,11-12,16-23
3146 atoms, 15 residues, 15 models selected
> view #!1.4.11 @ zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @ zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.11,19,22 @ zoom 0.75
moved plane near -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
moved plane far -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19,22
> select #!1.4.11,19,22
811 atoms, 3 residues, 3 models selected
> view #!1.4.8,11,19,22 @ zoom 0.75
moved plane near -50.784107656417966 [-0.36948623 0.69372777 0.61824075]
moved plane far -50.784107656417966 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19,22
> select #!1.4.8,11,19,22
841 atoms, 4 residues, 4 models selected
> view #!1.4.3,8,11,19,22 @ zoom 0.75
moved plane near -56.50978115131668 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.50978115131668 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,19,22
> select #!1.4.3,8,11,19,22
930 atoms, 5 residues, 5 models selected
> view #!1.4.3,8,11,19,22-23 @ zoom 0.75
moved plane near -56.50980184330376 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.50980184330376 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,19,22-23
> select #!1.4.3,8,11,19,22-23
964 atoms, 6 residues, 6 models selected
> view #!1.4.3,8,11,19,21-23 @ zoom 0.75
moved plane near -57.80165152923424 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.80165152923424 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,19,21-23
> select #!1.4.3,8,11,19,21-23
1003 atoms, 7 residues, 7 models selected
> view #!1.4.2-3,8,11,19,21-23 @ zoom 0.75
moved plane near -62.96969366358866 [-0.36948623 0.69372777 0.61824075]
moved plane far -62.96969366358866 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,8,11,19,21-23
> select #!1.4.2-3,8,11,19,21-23
1407 atoms, 8 residues, 8 models selected
> view #!1.4.2-3,8,11,16,19,21-23 @ zoom 0.75
moved plane near -62.96969366358866 [-0.36948623 0.69372777 0.61824075]
moved plane far -62.96969366358866 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,8,11,16,19,21-23
> select #!1.4.2-3,8,11,16,19,21-23
1588 atoms, 9 residues, 9 models selected
> view #!1.4.2-3,7-8,11,16,19,21-23 @ zoom 0.75
moved plane near -63.36319239745884 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.36319239745884 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,7-8,11,16,19,21-23
> select #!1.4.2-3,7-8,11,16,19,21-23
2291 atoms, 10 residues, 10 models selected
> view #!1.4.2-4,7-8,11,16,19,21-23 @ zoom 0.75
moved plane near -63.36319239745884 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.36319239745884 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-4,7-8,11,16,19,21-23
> select #!1.4.2-4,7-8,11,16,19,21-23
2552 atoms, 11 residues, 11 models selected
> view #!1.4.2-4,7-8,11,16-17,19,21-23 @ zoom 0.75
moved plane near -63.36319239745884 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.36319239745884 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-4,7-8,11,16-17,19,21-23
> select #!1.4.2-4,7-8,11,16-17,19,21-23
2630 atoms, 12 residues, 12 models selected
> view #!1.4.2-4,7-8,11-12,16-17,19,21-23 @ zoom 0.75
moved plane near -63.57233454842632 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.57233454842632 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-4,7-8,11-12,16-17,19,21-23
> select #!1.4.2-4,7-8,11-12,16-17,19,21-23
2830 atoms, 13 residues, 13 models selected
> view #!1.4.2-4,7-8,11-12,16-19,21-23 @ zoom 0.75
moved plane near -63.57233454842632 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.57233454842632 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-4,7-8,11-12,16-19,21-23
> select #!1.4.2-4,7-8,11-12,16-19,21-23
2908 atoms, 14 residues, 14 models selected
> view #!1.4.2-4,7-8,11-12,16-23 @ zoom 0.75
moved plane near -63.58275918008911 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.58275918008911 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-4,7-8,11-12,16-23
> select #!1.4.2-4,7-8,11-12,16-23
3146 atoms, 15 residues, 15 models selected
> view #!1.4.2-4,7-8,11-12,16-23 @ zoom 0.75
moved plane near -63.58275918008911 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.58275918008911 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-4,7-8,11-12,16-23
> select #!1.4.2-4,7-8,11-12,16-23
3146 atoms, 15 residues, 15 models selected
> view #!1.4.3-4,7-8,11-12,16-23 @ zoom 0.75
moved plane near -58.414964151047094 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.414964151047094 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3-4,7-8,11-12,16-23
> select #!1.4.3-4,7-8,11-12,16-23
2742 atoms, 14 residues, 14 models selected
> view #!1.4.11 @ zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @ zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.11,19,22 @ zoom 0.75
moved plane near -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
moved plane far -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19,22
> select #!1.4.11,19,22
811 atoms, 3 residues, 3 models selected
> view #!1.4.3,11,19,22 @ zoom 0.75
moved plane near -48.577857756738716 [-0.36948623 0.69372777 0.61824075]
moved plane far -48.577857756738716 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,11,19,22
> select #!1.4.3,11,19,22
900 atoms, 4 residues, 4 models selected
> view #!1.4.3,8,11,19,22 @ zoom 0.75
moved plane near -56.50978115131668 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.50978115131668 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,19,22
> select #!1.4.3,8,11,19,22
930 atoms, 5 residues, 5 models selected
> view #!1.4.3,8,11,19,22-23 @ zoom 0.75
moved plane near -56.50980184330376 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.50980184330376 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,19,22-23
> select #!1.4.3,8,11,19,22-23
964 atoms, 6 residues, 6 models selected
> view #!1.4.3,8,11,19,21-23 @ zoom 0.75
moved plane near -57.80165152923424 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.80165152923424 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,19,21-23
> select #!1.4.3,8,11,19,21-23
1003 atoms, 7 residues, 7 models selected
> view #!1.4.3,8,11,16,19,21-23 @ zoom 0.75
moved plane near -57.80165152923424 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.80165152923424 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,16,19,21-23
> select #!1.4.3,8,11,16,19,21-23
1184 atoms, 8 residues, 8 models selected
> view #!1.4.3,7-8,11,16,19,21-23 @ zoom 0.75
moved plane near -58.19540881200797 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.19540881200797 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,7-8,11,16,19,21-23
> select #!1.4.3,7-8,11,16,19,21-23
1887 atoms, 9 residues, 9 models selected
> view #!1.4.3-4,7-8,11,16,19,21-23 @ zoom 0.75
moved plane near -58.19540881200797 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.19540881200797 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3-4,7-8,11,16,19,21-23
> select #!1.4.3-4,7-8,11,16,19,21-23
2148 atoms, 10 residues, 10 models selected
> view #!1.4.3-4,7-8,11,16-17,19,21-23 @ zoom 0.75
moved plane near -58.19540881200797 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.19540881200797 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3-4,7-8,11,16-17,19,21-23
> select #!1.4.3-4,7-8,11,16-17,19,21-23
2226 atoms, 11 residues, 11 models selected
> view #!1.4.3-4,7-8,11-12,16-17,19,21-23 @ zoom 0.75
moved plane near -58.40453801619302 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.40453801619302 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3-4,7-8,11-12,16-17,19,21-23
> select #!1.4.3-4,7-8,11-12,16-17,19,21-23
2426 atoms, 12 residues, 12 models selected
> view #!1.4.3-4,7-8,11-12,16-19,21-23 @ zoom 0.75
moved plane near -58.40453801619302 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.40453801619302 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3-4,7-8,11-12,16-19,21-23
> select #!1.4.3-4,7-8,11-12,16-19,21-23
2504 atoms, 13 residues, 13 models selected
> view #!1.4.3-4,7-8,11-12,16-23 @ zoom 0.75
moved plane near -58.414964151047094 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.414964151047094 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3-4,7-8,11-12,16-23
> select #!1.4.3-4,7-8,11-12,16-23
2742 atoms, 14 residues, 14 models selected
> view #!1.4.3-4,7-8,11-12,16-23 @ zoom 0.75
moved plane near -58.414964151047094 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.414964151047094 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3-4,7-8,11-12,16-23
> select #!1.4.3-4,7-8,11-12,16-23
2742 atoms, 14 residues, 14 models selected
> view #!1.4.4,7-8,11-12,16-23 @ zoom 0.75
moved plane near -57.99361361564829 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.99361361564829 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.4,7-8,11-12,16-23
> select #!1.4.4,7-8,11-12,16-23
2653 atoms, 13 residues, 13 models selected
> view #!1.4.11 @ zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @ zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.11,19,22 @ zoom 0.75
moved plane near -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
moved plane far -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19,22
> select #!1.4.11,19,22
811 atoms, 3 residues, 3 models selected
> view #!1.4.8,11,19,22 @ zoom 0.75
moved plane near -50.784107656417966 [-0.36948623 0.69372777 0.61824075]
moved plane far -50.784107656417966 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19,22
> select #!1.4.8,11,19,22
841 atoms, 4 residues, 4 models selected
> view #!1.4.8,11,19,22-23 @ zoom 0.75
moved plane near -50.78412834840504 [-0.36948623 0.69372777 0.61824075]
moved plane far -50.78412834840504 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19,22-23
> select #!1.4.8,11,19,22-23
875 atoms, 5 residues, 5 models selected
> view #!1.4.8,11,19,21-23 @ zoom 0.75
moved plane near -52.075975027952886 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.075975027952886 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19,21-23
> select #!1.4.8,11,19,21-23
914 atoms, 6 residues, 6 models selected
> view #!1.4.8,11,16,19,21-23 @ zoom 0.75
moved plane near -54.75637539757262 [-0.36948623 0.69372777 0.61824075]
moved plane far -54.75637539757262 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,16,19,21-23
> select #!1.4.8,11,16,19,21-23
1095 atoms, 7 residues, 7 models selected
> view #!1.4.7-8,11,16,19,21-23 @ zoom 0.75
moved plane near -55.15013268034636 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.15013268034636 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,16,19,21-23
> select #!1.4.7-8,11,16,19,21-23
1798 atoms, 8 residues, 8 models selected
> view #!1.4.4,7-8,11,16,19,21-23 @ zoom 0.75
moved plane near -57.77404833620932 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.77404833620932 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.4,7-8,11,16,19,21-23
> select #!1.4.4,7-8,11,16,19,21-23
2059 atoms, 9 residues, 9 models selected
> view #!1.4.4,7-8,11,16-17,19,21-23 @ zoom 0.75
moved plane near -57.77404833620932 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.77404833620932 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.4,7-8,11,16-17,19,21-23
> select #!1.4.4,7-8,11,16-17,19,21-23
2137 atoms, 10 residues, 10 models selected
> view #!1.4.4,7-8,11-12,16-17,19,21-23 @ zoom 0.75
moved plane near -57.98319048717681 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.98319048717681 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.4,7-8,11-12,16-17,19,21-23
> select #!1.4.4,7-8,11-12,16-17,19,21-23
2337 atoms, 11 residues, 11 models selected
> view #!1.4.4,7-8,11-12,16-19,21-23 @ zoom 0.75
moved plane near -57.98319048717681 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.98319048717681 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.4,7-8,11-12,16-19,21-23
> select #!1.4.4,7-8,11-12,16-19,21-23
2415 atoms, 12 residues, 12 models selected
> view #!1.4.4,7-8,11-12,16-23 @ zoom 0.75
moved plane near -57.99361361564829 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.99361361564829 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.4,7-8,11-12,16-23
> select #!1.4.4,7-8,11-12,16-23
2653 atoms, 13 residues, 13 models selected
> view #!1.4.4,7-8,11-12,16-23 @ zoom 0.75
moved plane near -57.99361361564829 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.99361361564829 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.4,7-8,11-12,16-23
> select #!1.4.4,7-8,11-12,16-23
2653 atoms, 13 residues, 13 models selected
> view #!1.4.7-8,11-12,16-23 @ zoom 0.75
moved plane near -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-23
> select #!1.4.7-8,11-12,16-23
2392 atoms, 12 residues, 12 models selected
> view #!1.4.11 @ zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @ zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.11,19,22 @ zoom 0.75
moved plane near -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
moved plane far -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19,22
> select #!1.4.11,19,22
811 atoms, 3 residues, 3 models selected
> view #!1.4.8,11,19,22 @ zoom 0.75
moved plane near -50.784107656417966 [-0.36948623 0.69372777 0.61824075]
moved plane far -50.784107656417966 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19,22
> select #!1.4.8,11,19,22
841 atoms, 4 residues, 4 models selected
> view #!1.4.8,11,19,22-23 @ zoom 0.75
moved plane near -50.78412834840504 [-0.36948623 0.69372777 0.61824075]
moved plane far -50.78412834840504 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19,22-23
> select #!1.4.8,11,19,22-23
875 atoms, 5 residues, 5 models selected
> view #!1.4.8,11,19,21-23 @ zoom 0.75
moved plane near -52.075975027952886 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.075975027952886 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19,21-23
> select #!1.4.8,11,19,21-23
914 atoms, 6 residues, 6 models selected
> view #!1.4.8,11,16,19,21-23 @ zoom 0.75
moved plane near -54.75637539757262 [-0.36948623 0.69372777 0.61824075]
moved plane far -54.75637539757262 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,16,19,21-23
> select #!1.4.8,11,16,19,21-23
1095 atoms, 7 residues, 7 models selected
> view #!1.4.7-8,11,16,19,21-23 @ zoom 0.75
moved plane near -55.15013268034636 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.15013268034636 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,16,19,21-23
> select #!1.4.7-8,11,16,19,21-23
1798 atoms, 8 residues, 8 models selected
> view #!1.4.7-8,11,16-17,19,21-23 @ zoom 0.75
moved plane near -55.15013268034636 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.15013268034636 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,16-17,19,21-23
> select #!1.4.7-8,11,16-17,19,21-23
1876 atoms, 9 residues, 9 models selected
> view #!1.4.7-8,11-12,16-17,19,21-23 @ zoom 0.75
moved plane near -55.35926489091401 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.35926489091401 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-17,19,21-23
> select #!1.4.7-8,11-12,16-17,19,21-23
2076 atoms, 10 residues, 10 models selected
> view #!1.4.7-8,11-12,16-19,21-23 @ zoom 0.75
moved plane near -55.35926489091401 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.35926489091401 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-19,21-23
> select #!1.4.7-8,11-12,16-19,21-23
2154 atoms, 11 residues, 11 models selected
> view #!1.4.7-8,11-12,16-23 @ zoom 0.75
moved plane near -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-23
> select #!1.4.7-8,11-12,16-23
2392 atoms, 12 residues, 12 models selected
> view #!1.4.7-8,11-12,16-23 @ zoom 0.75
moved plane near -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-23
> select #!1.4.7-8,11-12,16-23
2392 atoms, 12 residues, 12 models selected
> view #!1.4.7-8,11-12,16-20,22-23 @ zoom 0.75
moved plane near -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-20,22-23
> select #!1.4.7-8,11-12,16-20,22-23
2353 atoms, 11 residues, 11 models selected
> view #!1.4.11 @ zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @ zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.11,19,22 @ zoom 0.75
moved plane near -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
moved plane far -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19,22
> select #!1.4.11,19,22
811 atoms, 3 residues, 3 models selected
> view #!1.4.8,11,19,22 @ zoom 0.75
moved plane near -50.784107656417966 [-0.36948623 0.69372777 0.61824075]
moved plane far -50.784107656417966 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19,22
> select #!1.4.8,11,19,22
841 atoms, 4 residues, 4 models selected
> view #!1.4.8,11,19,22-23 @ zoom 0.75
moved plane near -50.78412834840504 [-0.36948623 0.69372777 0.61824075]
moved plane far -50.78412834840504 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19,22-23
> select #!1.4.8,11,19,22-23
875 atoms, 5 residues, 5 models selected
> view #!1.4.8,11,16,19,22-23 @ zoom 0.75
moved plane near -53.464525711642175 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.464525711642175 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,16,19,22-23
> select #!1.4.8,11,16,19,22-23
1056 atoms, 6 residues, 6 models selected
> view #!1.4.7-8,11,16,19,22-23 @ zoom 0.75
moved plane near -53.85643849293674 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.85643849293674 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,16,19,22-23
> select #!1.4.7-8,11,16,19,22-23
1759 atoms, 7 residues, 7 models selected
> view #!1.4.7-8,11,16-17,19,22-23 @ zoom 0.75
moved plane near -53.85643849293674 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.85643849293674 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,16-17,19,22-23
> select #!1.4.7-8,11,16-17,19,22-23
1837 atoms, 8 residues, 8 models selected
> view #!1.4.7-8,11-12,16-17,19,22-23 @ zoom 0.75
moved plane near -55.35926489091401 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.35926489091401 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-17,19,22-23
> select #!1.4.7-8,11-12,16-17,19,22-23
2037 atoms, 9 residues, 9 models selected
> view #!1.4.7-8,11-12,16-19,22-23 @ zoom 0.75
moved plane near -55.35926489091401 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.35926489091401 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-19,22-23
> select #!1.4.7-8,11-12,16-19,22-23
2115 atoms, 10 residues, 10 models selected
> view #!1.4.7-8,11-12,16-20,22-23 @ zoom 0.75
moved plane near -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-20,22-23
> select #!1.4.7-8,11-12,16-20,22-23
2353 atoms, 11 residues, 11 models selected
> view #!1.4.7-8,11-12,16-20,22-23 @ zoom 0.75
moved plane near -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-20,22-23
> select #!1.4.7-8,11-12,16-20,22-23
2353 atoms, 11 residues, 11 models selected
> view #!1.4.7-8,11-12,16-20,23 @ zoom 0.75
moved plane near -53.771207427011404 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.771207427011404 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-20,23
> select #!1.4.7-8,11-12,16-20,23
2258 atoms, 10 residues, 10 models selected
> view #!1.4.11 @ zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @ zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.8,11,19 @ zoom 0.75
moved plane near -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
moved plane far -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19
> select #!1.4.8,11,19
746 atoms, 3 residues, 3 models selected
> view #!1.4.8,11,19,23 @ zoom 0.75
moved plane near -49.72659400725848 [-0.36948623 0.69372777 0.61824075]
moved plane far -49.72659400725848 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19,23
> select #!1.4.8,11,19,23
780 atoms, 4 residues, 4 models selected
> view #!1.4.8,11,16,19,23 @ zoom 0.75
moved plane near -52.407177598379285 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.407177598379285 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,16,19,23
> select #!1.4.8,11,16,19,23
961 atoms, 5 residues, 5 models selected
> view #!1.4.7-8,11,16,19,23 @ zoom 0.75
moved plane near -52.798941273676526 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.798941273676526 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,16,19,23
> select #!1.4.7-8,11,16,19,23
1664 atoms, 6 residues, 6 models selected
> view #!1.4.7-8,11,16-17,19,23 @ zoom 0.75
moved plane near -52.798941273676526 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.798941273676526 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,16-17,19,23
> select #!1.4.7-8,11,16-17,19,23
1742 atoms, 7 residues, 7 models selected
> view #!1.4.7-8,11-12,16-17,19,23 @ zoom 0.75
moved plane near -53.370213042762835 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.370213042762835 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-17,19,23
> select #!1.4.7-8,11-12,16-17,19,23
1942 atoms, 8 residues, 8 models selected
> view #!1.4.7-8,11-12,16-19,23 @ zoom 0.75
moved plane near -53.370213042762835 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.370213042762835 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-19,23
> select #!1.4.7-8,11-12,16-19,23
2020 atoms, 9 residues, 9 models selected
> view #!1.4.7-8,11-12,16-20,23 @ zoom 0.75
moved plane near -53.771207427011404 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.771207427011404 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-20,23
> select #!1.4.7-8,11-12,16-20,23
2258 atoms, 10 residues, 10 models selected
> view #!1.4.7-8,11-12,16-20,23 @ zoom 0.75
moved plane near -53.771207427011404 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.771207427011404 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-20,23
> select #!1.4.7-8,11-12,16-20,23
2258 atoms, 10 residues, 10 models selected
> view #!1.4.7-8,11-12,16-20 @ zoom 0.75
moved plane near -53.32958178193442 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.32958178193442 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-20
> select #!1.4.7-8,11-12,16-20
2224 atoms, 9 residues, 9 models selected
> view #!1.4.11 @ zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @ zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.8,11,19 @ zoom 0.75
moved plane near -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
moved plane far -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19
> select #!1.4.8,11,19
746 atoms, 3 residues, 3 models selected
> view #!1.4.8,11,16,19 @ zoom 0.75
moved plane near -51.389550783499914 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.389550783499914 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,16,19
> select #!1.4.8,11,16,19
927 atoms, 4 residues, 4 models selected
> view #!1.4.7-8,11,16,19 @ zoom 0.75
moved plane near -51.7814605584119 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.7814605584119 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,16,19
> select #!1.4.7-8,11,16,19
1630 atoms, 5 residues, 5 models selected
> view #!1.4.7-8,11,16-17,19 @ zoom 0.75
moved plane near -51.7814605584119 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.7814605584119 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,16-17,19
> select #!1.4.7-8,11,16-17,19
1708 atoms, 6 residues, 6 models selected
> view #!1.4.7-8,11-12,16-17,19 @ zoom 0.75
moved plane near -53.31915564708034 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.31915564708034 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-17,19
> select #!1.4.7-8,11-12,16-17,19
1908 atoms, 7 residues, 7 models selected
> view #!1.4.7-8,11-12,16-19 @ zoom 0.75
moved plane near -53.31915564708034 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.31915564708034 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-19
> select #!1.4.7-8,11-12,16-19
1986 atoms, 8 residues, 8 models selected
> view #!1.4.7-8,11-12,16-20 @ zoom 0.75
moved plane near -53.32958178193442 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.32958178193442 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-20
> select #!1.4.7-8,11-12,16-20
2224 atoms, 9 residues, 9 models selected
> view #!1.4.7-8,11-12,16-20 @ zoom 0.75
moved plane near -53.32958178193442 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.32958178193442 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-20
> select #!1.4.7-8,11-12,16-20
2224 atoms, 9 residues, 9 models selected
> view #!1.4.7-8,11-12,17-20 @ zoom 0.75
moved plane near -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,17-20
> select #!1.4.7-8,11-12,17-20
2043 atoms, 8 residues, 8 models selected
> view #!1.4.11 @ zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @ zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.8,11,19 @ zoom 0.75
moved plane near -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
moved plane far -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19
> select #!1.4.8,11,19
746 atoms, 3 residues, 3 models selected
> view #!1.4.8,11,17,19 @ zoom 0.75
moved plane near -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
moved plane far -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,17,19
> select #!1.4.8,11,17,19
824 atoms, 4 residues, 4 models selected
> view #!1.4.7-8,11,17,19 @ zoom 0.75
moved plane near -50.61923221620078 [-0.36948623 0.69372777 0.61824075]
moved plane far -50.61923221620078 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,17,19
> select #!1.4.7-8,11,17,19
1527 atoms, 5 residues, 5 models selected
> view #!1.4.7-8,11-12,17,19 @ zoom 0.75
moved plane near -51.969822165407926 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.969822165407926 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,17,19
> select #!1.4.7-8,11-12,17,19
1727 atoms, 6 residues, 6 models selected
> view #!1.4.7-8,11-12,17-19 @ zoom 0.75
moved plane near -51.969822165407926 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.969822165407926 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,17-19
> select #!1.4.7-8,11-12,17-19
1805 atoms, 7 residues, 7 models selected
> view #!1.4.7-8,11-12,17-20 @ zoom 0.75
moved plane near -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,17-20
> select #!1.4.7-8,11-12,17-20
2043 atoms, 8 residues, 8 models selected
> view #!1.4.7-8,11-12,17-20 @ zoom 0.75
moved plane near -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,17-20
> select #!1.4.7-8,11-12,17-20
2043 atoms, 8 residues, 8 models selected
> view #!1.4.7-8,11-12,18-20 @ zoom 0.75
moved plane near -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,18-20
> select #!1.4.7-8,11-12,18-20
1965 atoms, 7 residues, 7 models selected
> view #!1.4.11 @ zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @ zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.8,11,19 @ zoom 0.75
moved plane near -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
moved plane far -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19
> select #!1.4.8,11,19
746 atoms, 3 residues, 3 models selected
> view #!1.4.7-8,11,19 @ zoom 0.75
moved plane near -50.61923221620078 [-0.36948623 0.69372777 0.61824075]
moved plane far -50.61923221620078 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,19
> select #!1.4.7-8,11,19
1449 atoms, 4 residues, 4 models selected
> view #!1.4.7-8,11-12,19 @ zoom 0.75
moved plane near -51.969822165407926 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.969822165407926 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,19
> select #!1.4.7-8,11-12,19
1649 atoms, 5 residues, 5 models selected
> view #!1.4.7-8,11-12,18-19 @ zoom 0.75
moved plane near -51.969822165407926 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.969822165407926 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,18-19
> select #!1.4.7-8,11-12,18-19
1727 atoms, 6 residues, 6 models selected
> view #!1.4.7-8,11-12,18-20 @ zoom 0.75
moved plane near -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,18-20
> select #!1.4.7-8,11-12,18-20
1965 atoms, 7 residues, 7 models selected
> view #!1.4.7-8,11-12,18-20 @ zoom 0.75
moved plane near -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,18-20
> select #!1.4.7-8,11-12,18-20
1965 atoms, 7 residues, 7 models selected
> view #!1.4.7-8,11-12,19-20 @ zoom 0.75
moved plane near -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,19-20
> select #!1.4.7-8,11-12,19-20
1887 atoms, 6 residues, 6 models selected
> view #!1.4.19 @ zoom 0.75
moved plane near -19.24998229914558 [-0.36948623 0.69372777 0.61824075]
moved plane far -19.24998229914558 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.19
> select #!1.4.19
216 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @ zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.8,11,19 @ zoom 0.75
moved plane near -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
moved plane far -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19
> select #!1.4.8,11,19
746 atoms, 3 residues, 3 models selected
> view #!1.4.7-8,11,19 @ zoom 0.75
moved plane near -50.61923221620078 [-0.36948623 0.69372777 0.61824075]
moved plane far -50.61923221620078 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,19
> select #!1.4.7-8,11,19
1449 atoms, 4 residues, 4 models selected
> view #!1.4.7-8,11-12,19 @ zoom 0.75
moved plane near -51.969822165407926 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.969822165407926 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,19
> select #!1.4.7-8,11-12,19
1649 atoms, 5 residues, 5 models selected
> view #!1.4.7-8,11-12,19-20 @ zoom 0.75
moved plane near -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,19-20
> select #!1.4.7-8,11-12,19-20
1887 atoms, 6 residues, 6 models selected
> view #!1.4.7-8,11-12,19-20 @ zoom 0.75
moved plane near -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,19-20
> select #!1.4.7-8,11-12,19-20
1887 atoms, 6 residues, 6 models selected
> view #!1.4.7-8,11-12,20 @ zoom 0.75
moved plane near -51.03431845110591 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.03431845110591 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,20
> select #!1.4.7-8,11-12,20
1671 atoms, 5 residues, 5 models selected
> view #!1.4.11 @ zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.8,11 @ zoom 0.75
moved plane near -41.01393241265763 [-0.36948623 0.69372777 0.61824075]
moved plane far -41.01393241265763 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11
> select #!1.4.8,11
530 atoms, 2 residues, 2 models selected
> view #!1.4.8,11-12 @ zoom 0.75
moved plane near -42.3419603862123 [-0.36948623 0.69372777 0.61824075]
moved plane far -42.3419603862123 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11-12
> select #!1.4.8,11-12
730 atoms, 3 residues, 3 models selected
> view #!1.4.7-8,11-12 @ zoom 0.75
moved plane near -44.963155229085885 [-0.36948623 0.69372777 0.61824075]
moved plane far -44.963155229085885 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12
> select #!1.4.7-8,11-12
1433 atoms, 4 residues, 4 models selected
> view #!1.4.7-8,11-12,20 @ zoom 0.75
moved plane near -51.03431845110591 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.03431845110591 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,20
> select #!1.4.7-8,11-12,20
1671 atoms, 5 residues, 5 models selected
> view #!1.4.7-8,11-12,20 @ zoom 0.75
moved plane near -51.03431845110591 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.03431845110591 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,20
> select #!1.4.7-8,11-12,20
1671 atoms, 5 residues, 5 models selected
> view #!1.4.7-8,11-12 @ zoom 0.75
moved plane near -44.963155229085885 [-0.36948623 0.69372777 0.61824075]
moved plane far -44.963155229085885 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12
> select #!1.4.7-8,11-12
1433 atoms, 4 residues, 4 models selected
> view #!1.4.8 @ zoom 0.75
moved plane near -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
moved plane far -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8
> select #!1.4.8
30 atoms, 1 residue, 1 model selected
> view #!1.4.7-8 @ zoom 0.75
moved plane near -29.76852086239114 [-0.36948623 0.69372777 0.61824075]
moved plane far -29.76852086239114 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8
> select #!1.4.7-8
733 atoms, 2 residues, 2 models selected
> view #!1.4.7-8,12 @ zoom 0.75
moved plane near -32.61469550566749 [-0.36948623 0.69372777 0.61824075]
moved plane far -32.61469550566749 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,12
> select #!1.4.7-8,12
933 atoms, 3 residues, 3 models selected
> view #!1.4.7-8,11-12 @ zoom 0.75
moved plane near -44.963155229085885 [-0.36948623 0.69372777 0.61824075]
moved plane far -44.963155229085885 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12
> select #!1.4.7-8,11-12
1433 atoms, 4 residues, 4 models selected
> view #!1.4.7-8,11-12 @ zoom 0.75
moved plane near -44.963155229085885 [-0.36948623 0.69372777 0.61824075]
moved plane far -44.963155229085885 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12
> select #!1.4.7-8,11-12
1433 atoms, 4 residues, 4 models selected
> view #!1.4.7-8,12 @ zoom 0.75
moved plane near -32.61469550566749 [-0.36948623 0.69372777 0.61824075]
moved plane far -32.61469550566749 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,12
> select #!1.4.7-8,12
933 atoms, 3 residues, 3 models selected
> view #!1.4.8 @ zoom 0.75
moved plane near -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
moved plane far -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8
> select #!1.4.8
30 atoms, 1 residue, 1 model selected
> view #!1.4.7-8 @ zoom 0.75
moved plane near -29.76852086239114 [-0.36948623 0.69372777 0.61824075]
moved plane far -29.76852086239114 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8
> select #!1.4.7-8
733 atoms, 2 residues, 2 models selected
> view #!1.4.7-8,12 @ zoom 0.75
moved plane near -32.61469550566749 [-0.36948623 0.69372777 0.61824075]
moved plane far -32.61469550566749 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,12
> select #!1.4.7-8,12
933 atoms, 3 residues, 3 models selected
> view #!1.4.7-8,12 @ zoom 0.75
moved plane near -32.61469550566749 [-0.36948623 0.69372777 0.61824075]
moved plane far -32.61469550566749 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,12
> select #!1.4.7-8,12
933 atoms, 3 residues, 3 models selected
> view #!1.4.7-8 @ zoom 0.75
moved plane near -29.76852086239114 [-0.36948623 0.69372777 0.61824075]
moved plane far -29.76852086239114 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8
> select #!1.4.7-8
733 atoms, 2 residues, 2 models selected
> view #!1.4.8 @ zoom 0.75
moved plane near -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
moved plane far -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8
> select #!1.4.8
30 atoms, 1 residue, 1 model selected
> view #!1.4.7-8 @ zoom 0.75
moved plane near -29.76852086239114 [-0.36948623 0.69372777 0.61824075]
moved plane far -29.76852086239114 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8
> select #!1.4.7-8
733 atoms, 2 residues, 2 models selected
> view #!1.4.7-8 @ zoom 0.75
moved plane near -29.76852086239114 [-0.36948623 0.69372777 0.61824075]
moved plane far -29.76852086239114 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8
> select #!1.4.7-8
733 atoms, 2 residues, 2 models selected
> view #!1.4.8 @ zoom 0.75
moved plane near -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
moved plane far -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8
> select #!1.4.8
30 atoms, 1 residue, 1 model selected
> view #!1.4.8 @ zoom 0.75
moved plane near -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
moved plane far -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8
> select #!1.4.8
30 atoms, 1 residue, 1 model selected
> view #!1.4.8 @ zoom 0.75
moved plane near -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
moved plane far -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8
> select #!1.4.8
30 atoms, 1 residue, 1 model selected
> delete bonds (#!1.4.1-13,15-23 & sel)
> ui tool show "Find Cavities"
> kvfinder #1
23 cavities found for 25.3.14 275Y 21h.pdb #!1
25.3.14 275Y 21h.pdb Cavities
---
ID | | Volume | Area | Points
1.5.14 | | 559.44 | 439.97 | 2590
1.5.7 | | 151.85 | 143.35 | 703
1.5.11 | | 108 | 149.87 | 500
1.5.2 | | 87.26 | 125.45 | 404
1.5.10 | | 71.06 | 104.04 | 329
1.5.4 | | 56.38 | 75.88 | 261
1.5.20 | | 51.41 | 58.92 | 238
1.5.19 | | 46.66 | 69.05 | 216
1.5.12 | | 43.2 | 59.01 | 200
1.5.16 | | 39.1 | 60.87 | 181
1.5.22 | | 20.52 | 35.89 | 95
1.5.3 | | 19.22 | 35.47 | 89
1.5.5 | | 17.71 | 26.72 | 82
1.5.17 | | 16.85 | 32.3 | 78
1.5.18 | | 16.85 | 32.3 | 78
1.5.13 | | 15.98 | 25.9 | 74
1.5.6 | | 12.31 | 29.54 | 57
1.5.15 | | 12.31 | 29.54 | 57
1.5.1 | | 10.8 | 20.7 | 50
1.5.21 | | 8.42 | 14.48 | 39
1.5.23 | | 7.34 | 14.56 | 34
1.5.9 | | 7.13 | 14.78 | 33
1.5.8 | | 6.48 | 11.09 | 30
> view #1.5.7 @ zoom 0.75
moved plane near -23.77116514897808 [-0.36948623 0.69372777 0.61824075]
moved plane far -23.77116514897808 [-0.36948623 0.69372777 0.61824075]
> surface #1.5
> transparency #1.5 50
> ~surface #1.5
> surface #1.5.7
> select #1.5.7
703 atoms, 1 residue, 1 model selected
> view #!1.5.7,11 @ zoom 0.75
moved plane near -40.21104559882199 [-0.36948623 0.69372777 0.61824075]
moved plane far -40.21104559882199 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.7,11
> select #!1.5.7,11
1203 atoms, 2 residues, 2 models selected
> view #!1.5.2,7,11 @ zoom 0.75
moved plane near -49.38409733321987 [-0.36948623 0.69372777 0.61824075]
moved plane far -49.38409733321987 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2,7,11
> select #!1.5.2,7,11
1607 atoms, 3 residues, 3 models selected
> view #!1.5.2,7,10-11 @ zoom 0.75
moved plane near -52.935899907416974 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.935899907416974 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2,7,10-11
> select #!1.5.2,7,10-11
1936 atoms, 4 residues, 4 models selected
> view #!1.5.2,4,7,10-11 @ zoom 0.75
moved plane near -52.935899907416974 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.935899907416974 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2,4,7,10-11
> select #!1.5.2,4,7,10-11
2197 atoms, 5 residues, 5 models selected
> view #!1.5.2,4,7,10-11,20 @ zoom 0.75
moved plane near -59.197120422911816 [-0.36948623 0.69372777 0.61824075]
moved plane far -59.197120422911816 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2,4,7,10-11,20
> select #!1.5.2,4,7,10-11,20
2435 atoms, 6 residues, 6 models selected
> view #!1.5.2,4,7,10-11,19-20 @ zoom 0.75
moved plane near -60.784032920268565 [-0.36948623 0.69372777 0.61824075]
moved plane far -60.784032920268565 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2,4,7,10-11,19-20
> select #!1.5.2,4,7,10-11,19-20
2651 atoms, 7 residues, 7 models selected
> view #!1.5.2,4,7,10-12,19-20 @ zoom 0.75
moved plane near -61.0878054604897 [-0.36948623 0.69372777 0.61824075]
moved plane far -61.0878054604897 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2,4,7,10-12,19-20
> select #!1.5.2,4,7,10-12,19-20
2851 atoms, 8 residues, 8 models selected
> view #!1.5.2,4,7,10-12,16,19-20 @ zoom 0.75
moved plane near -61.39113622402149 [-0.36948623 0.69372777 0.61824075]
moved plane far -61.39113622402149 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2,4,7,10-12,16,19-20
> select #!1.5.2,4,7,10-12,16,19-20
3032 atoms, 9 residues, 9 models selected
> view #!1.5.2,4,7,10-12,16,19-20,22 @ zoom 0.75
moved plane near -63.44815186040184 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.44815186040184 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2,4,7,10-12,16,19-20,22
> select #!1.5.2,4,7,10-12,16,19-20,22
3127 atoms, 10 residues, 10 models selected
> view #!1.5.2-4,7,10-12,16,19-20,22 @ zoom 0.75
moved plane near -63.44815186040184 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.44815186040184 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2-4,7,10-12,16,19-20,22
> select #!1.5.2-4,7,10-12,16,19-20,22
3216 atoms, 11 residues, 11 models selected
> view #!1.5.2-5,7,10-12,16,19-20,22 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2-5,7,10-12,16,19-20,22
> select #!1.5.2-5,7,10-12,16,19-20,22
3298 atoms, 12 residues, 12 models selected
> view #!1.5.2-5,7,10-12,16,18-20,22 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2-5,7,10-12,16,18-20,22
> select #!1.5.2-5,7,10-12,16,18-20,22
3376 atoms, 13 residues, 13 models selected
> view #!1.5.2-5,7,10-12,16-20,22 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2-5,7,10-12,16-20,22
> select #!1.5.2-5,7,10-12,16-20,22
3454 atoms, 14 residues, 14 models selected
> view #!1.5.2-5,7,10-13,16-20,22 @ zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2-5,7,10-13,16-20,22
> select #!1.5.2-5,7,10-13,16-20,22
3528 atoms, 15 residues, 15 models selected
> view #!1.5.2-5,7,10-13,15-20,22 @ zoom 0.75
moved plane near -64.6078341780041 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.6078341780041 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2-5,7,10-13,15-20,22
> select #!1.5.2-5,7,10-13,15-20,22
3585 atoms, 16 residues, 16 models selected
> view #!1.5.2-7,10-13,15-20,22 @ zoom 0.75
moved plane near -64.6078341780041 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.6078341780041 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2-7,10-13,15-20,22
> select #!1.5.2-7,10-13,15-20,22
3642 atoms, 17 residues, 17 models selected
> view #!1.5.1-7,10-13,15-20,22 @ zoom 0.75
moved plane near -69.44798057386386 [-0.36948623 0.69372777 0.61824075]
moved plane far -69.44798057386386 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.1-7,10-13,15-20,22
> select #!1.5.1-7,10-13,15-20,22
3692 atoms, 18 residues, 18 models selected
> view #!1.5.1-7,10-13,15-22 @ zoom 0.75
moved plane near -69.44799436852192 [-0.36948623 0.69372777 0.61824075]
moved plane far -69.44799436852192 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.1-7,10-13,15-22
> select #!1.5.1-7,10-13,15-22
3731 atoms, 19 residues, 19 models selected
> view #!1.5.1-7,10-13,15-23 @ zoom 0.75
moved plane near -69.44799436852192 [-0.36948623 0.69372777 0.61824075]
moved plane far -69.44799436852192 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.1-7,10-13,15-23
> select #!1.5.1-7,10-13,15-23
3765 atoms, 20 residues, 20 models selected
> view #!1.5.1-7,9-13,15-23 @ zoom 0.75
moved plane near -69.44799436852192 [-0.36948623 0.69372777 0.61824075]
moved plane far -69.44799436852192 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.1-7,9-13,15-23
> select #!1.5.1-7,9-13,15-23
3798 atoms, 21 residues, 21 models selected
> view #!1.5.1-13,15-23 @ zoom 0.75
moved plane near -69.44799436852192 [-0.36948623 0.69372777 0.61824075]
moved plane far -69.44799436852192 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.1-13,15-23
> select #!1.5.1-13,15-23
3828 atoms, 22 residues, 22 models selected
> view #1
[Repeated 2 time(s)]
> ~surface #1.2
> ~surface #1.3
> ~surface #1.5
> ~select #!1.2.14
3828 atoms, 22 residues, 44 models selected
> ~select #!1.3.14
3828 atoms, 22 residues, 44 models selected
> ~select #!1.5.1-13,15-23
22 models selected
> ~surface #1.5
> ui tool show "Find Cavities"
> kvfinder #1
23 cavities found for 25.3.14 275Y 21h.pdb #!1
25.3.14 275Y 21h.pdb Cavities
---
ID | | Volume | Area | Points
1.6.14 | | 559.44 | 439.97 | 2590
1.6.7 | | 151.85 | 143.35 | 703
1.6.11 | | 108 | 149.87 | 500
1.6.2 | | 87.26 | 125.45 | 404
1.6.10 | | 71.06 | 104.04 | 329
1.6.4 | | 56.38 | 75.88 | 261
1.6.20 | | 51.41 | 58.92 | 238
1.6.19 | | 46.66 | 69.05 | 216
1.6.12 | | 43.2 | 59.01 | 200
1.6.16 | | 39.1 | 60.87 | 181
1.6.22 | | 20.52 | 35.89 | 95
1.6.3 | | 19.22 | 35.47 | 89
1.6.5 | | 17.71 | 26.72 | 82
1.6.17 | | 16.85 | 32.3 | 78
1.6.18 | | 16.85 | 32.3 | 78
1.6.13 | | 15.98 | 25.9 | 74
1.6.6 | | 12.31 | 29.54 | 57
1.6.15 | | 12.31 | 29.54 | 57
1.6.1 | | 10.8 | 20.7 | 50
1.6.21 | | 8.42 | 14.48 | 39
1.6.23 | | 7.34 | 14.56 | 34
1.6.9 | | 7.13 | 14.78 | 33
1.6.8 | | 6.48 | 11.09 | 30
> help help:user/tools/findcavities.html#cavitylist
> ui dockable false "25.3.14 275Y 21h.pdb Cavities"
> ui dockable true "25.3.14 275Y 21h.pdb Cavities"
> view #!1.2.14 @ zoom 0.75
moved plane near -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
moved plane far -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
> view #!1.3.14 @ zoom 0.75
moved plane near -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
moved plane far -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
> view #!1.5.13 @ zoom 0.75
moved plane near -19.951295200194995 [-0.5271713 0.72203976 0.44805014]
moved plane far -19.951295200194995 [-0.5271713 0.72203976 0.44805014]
> view #1.6.1-13,15-23 @ zoom 0.75
moved plane near -82.83733167477561 [-0.5271713 0.72203976 0.44805014]
moved plane far -82.83733167477561 [-0.5271713 0.72203976 0.44805014]
> view #1
[Repeated 3 time(s)]
> ~surface #1.2
> surface #!1.2.14
> ~surface #1.3
> surface #!1.3.14
> ~surface #1.5
> surface #!1.5.13
> surface #1.6
> transparency #1.6 50
> ~surface #1.6
> surface #1.6.1-13,15-23
> view #!1.2.14 @ zoom 0.75
moved plane near -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
moved plane far -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
> view #!1.3.14 @ zoom 0.75
moved plane near -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
moved plane far -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
> view #!1.5.13 @ zoom 0.75
moved plane near -19.951295200194995 [-0.5271713 0.72203976 0.44805014]
moved plane far -19.951295200194995 [-0.5271713 0.72203976 0.44805014]
> view #!1.6.1-13,15-23 @ zoom 0.75
moved plane near -82.83733167477561 [-0.5271713 0.72203976 0.44805014]
moved plane far -82.83733167477561 [-0.5271713 0.72203976 0.44805014]
> view #1
[Repeated 3 time(s)]
> view #!1.2.14 @ zoom 0.75
moved plane near -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
moved plane far -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
> view #!1.3.14 @ zoom 0.75
moved plane near -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
moved plane far -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
> view #!1.5.13 @ zoom 0.75
moved plane near -19.951295200194995 [-0.5271713 0.72203976 0.44805014]
moved plane far -19.951295200194995 [-0.5271713 0.72203976 0.44805014]
> view #!1.6.1-13,15-23 @ zoom 0.75
moved plane near -82.83733167477561 [-0.5271713 0.72203976 0.44805014]
moved plane far -82.83733167477561 [-0.5271713 0.72203976 0.44805014]
> view #1
[Repeated 3 time(s)]
> select #!1.2.14
2590 atoms, 1 residue, 1 model selected
> select #!1.3.14
2590 atoms, 1 residue, 1 model selected
> select #!1.5.13
74 atoms, 1 residue, 1 model selected
> select #!1.6.1-13,15-23
3828 atoms, 22 residues, 22 models selected
> ~surface #1.6
> surface #!1.6.1-11,13,15-23
> select #!1.6.1-11,13,15-23
3628 atoms, 21 residues, 21 models selected
> ~surface #1.6
> surface #!1.6.1-11,13,15,17-23
> select #!1.6.1-11,13,15,17-23
3447 atoms, 20 residues, 20 models selected
> ~surface #1.6
> surface #!1.6.1-11,13,15-23
> select #!1.6.1-11,13,15-23
3628 atoms, 21 residues, 21 models selected
> ~surface #1.6
> surface #!1.6.1-11,13,15-21,23
> select #!1.6.1-11,13,15-21,23
3533 atoms, 20 residues, 20 models selected
> ~surface #1.6
> surface #!1.6.1-2,4,6-11,13,15-21,23
> select #!1.6.1-2,4,6-11,13,15-21,23
3362 atoms, 18 residues, 18 models selected
> ~surface #1.6
> surface #!1.6.1-2,4,6-11,13,15-16,18-21,23
> select #!1.6.1-2,4,6-11,13,15-16,18-21,23
3284 atoms, 17 residues, 17 models selected
> ~surface #1.6
> surface #!1.6.1-2,4,6-11,15-16,18-21,23
> select #!1.6.1-2,4,6-11,15-16,18-21,23
3210 atoms, 16 residues, 16 models selected
> ui tool show "Find Cavities"
> kvfinder #1
23 cavities found for 25.3.14 275Y 21h.pdb #!1
25.3.14 275Y 21h.pdb Cavities
---
ID | | Volume | Area | Points
1.7.14 | | 559.44 | 439.97 | 2590
1.7.7 | | 151.85 | 143.35 | 703
1.7.11 | | 108 | 149.87 | 500
1.7.2 | | 87.26 | 125.45 | 404
1.7.10 | | 71.06 | 104.04 | 329
1.7.4 | | 56.38 | 75.88 | 261
1.7.20 | | 51.41 | 58.92 | 238
1.7.19 | | 46.66 | 69.05 | 216
1.7.12 | | 43.2 | 59.01 | 200
1.7.16 | | 39.1 | 60.87 | 181
1.7.22 | | 20.52 | 35.89 | 95
1.7.3 | | 19.22 | 35.47 | 89
1.7.5 | | 17.71 | 26.72 | 82
1.7.17 | | 16.85 | 32.3 | 78
1.7.18 | | 16.85 | 32.3 | 78
1.7.13 | | 15.98 | 25.9 | 74
1.7.6 | | 12.31 | 29.54 | 57
1.7.15 | | 12.31 | 29.54 | 57
1.7.1 | | 10.8 | 20.7 | 50
1.7.21 | | 8.42 | 14.48 | 39
1.7.23 | | 7.34 | 14.56 | 34
1.7.9 | | 7.13 | 14.78 | 33
1.7.8 | | 6.48 | 11.09 | 30
> surface #1.7
> transparency #1.7 50
> ~surface #1.7
> surface #1.7.7
> select #1.7.7
703 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.7,11
> select #!1.7.7,11
1203 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.2,4,7,10-11
> select #!1.7.2,4,7,10-11
2197 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.2,4,7,10-11,19-20
> select #!1.7.2,4,7,10-11,19-20
2651 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.2,4,7,10-12,16,19-20
> select #!1.7.2,4,7,10-12,16,19-20
3032 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.2-5,7,10-12,16-20,22
> select #!1.7.2-5,7,10-12,16-20,22
3454 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.2-5,7,10-13,16-20,22
> select #!1.7.2-5,7,10-13,16-20,22
3528 atoms, 15 residues, 15 models selected
> ~surface #1.7
> surface #!1.7.2-5,7,10-13,15-20,22
> select #!1.7.2-5,7,10-13,15-20,22
3585 atoms, 16 residues, 16 models selected
> ~surface #1.7
> surface #!1.7.2-7,10-13,15-20,22
> select #!1.7.2-7,10-13,15-20,22
3642 atoms, 17 residues, 17 models selected
> ~surface #1.7
> surface #!1.7.1-7,10-13,15-20,22
> select #!1.7.1-7,10-13,15-20,22
3692 atoms, 18 residues, 18 models selected
> ~surface #1.7
> surface #!1.7.1-7,10-13,15-22
> select #!1.7.1-7,10-13,15-22
3731 atoms, 19 residues, 19 models selected
> ~surface #1.7
> surface #!1.7.1-7,10-13,15-23
> select #!1.7.1-7,10-13,15-23
3765 atoms, 20 residues, 20 models selected
> ~surface #1.7
> surface #!1.7.1-7,9-13,15-23
> select #!1.7.1-7,9-13,15-23
3798 atoms, 21 residues, 21 models selected
> ~surface #1.7
> surface #!1.7.1-13,15-23
> select #!1.7.1-13,15-23
3828 atoms, 22 residues, 22 models selected
> surface hidePatches (#!1.7.1-13,15-23 & sel)
[Repeated 1 time(s)]
> surface (#!1.7.1-13,15-23 & sel)
> cartoon hide (#!1.7.1-13,15-23 & sel)
> ~label (#!1.7.1-13,15-23 & sel) residues
> delete atoms (#!1.7.1-13,15-23 & sel)
> ~surface #1.7
> surface #!1.7.1,3-13,15-23
> select #!1.7.1,3-13,15-23
3424 atoms, 21 residues, 21 models selected
> ~surface #1.7
> surface #!1.7.15
> select #!1.7.15
57 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.1,15
> select #!1.7.1,15
107 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.1,4,15
> select #!1.7.1,4,15
368 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.1,4,15,17
> select #!1.7.1,4,15,17
446 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.1,4,15,17,21
> select #!1.7.1,4,15,17,21
485 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.1,4,10,15,17,21
> select #!1.7.1,4,10,15,17,21
814 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.1,4,10,15,17-18,21
> select #!1.7.1,4,10,15,17-18,21
892 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.1,4,10,13,15,17-18,21
> select #!1.7.1,4,10,13,15,17-18,21
966 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.1,4,10-11,13,15,17-18,21
> select #!1.7.1,4,10-11,13,15,17-18,21
1466 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.1,4,10-11,13,15,17-18,20-21
> select #!1.7.1,4,10-11,13,15,17-18,20-21
1704 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.1,4,10-11,13,15,17-21
> select #!1.7.1,4,10-11,13,15,17-21
1920 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.1,4-5,10-11,13,15,17-21
> select #!1.7.1,4-5,10-11,13,15,17-21
2002 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.1,4-5,10-13,15,17-21
> select #!1.7.1,4-5,10-13,15,17-21
2202 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.1,4-5,10-13,15,17-21,23
> select #!1.7.1,4-5,10-13,15,17-21,23
2236 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.1,4-5,10-13,15-21,23
> select #!1.7.1,4-5,10-13,15-21,23
2417 atoms, 15 residues, 15 models selected
> ~surface #1.7
> surface #!1.7.1,3-5,10-13,15-21,23
> select #!1.7.1,3-5,10-13,15-21,23
2506 atoms, 16 residues, 16 models selected
> ~surface #1.7
> surface #!1.7.1,3-5,7,10-13,15-21,23
> select #!1.7.1,3-5,7,10-13,15-21,23
3209 atoms, 17 residues, 17 models selected
> ~surface #1.7
> surface #!1.7.1,3-7,10-13,15-21,23
> select #!1.7.1,3-7,10-13,15-21,23
3266 atoms, 18 residues, 18 models selected
> ~surface #1.7
> surface #!1.7.1,3-7,9-13,15-21,23
> select #!1.7.1,3-7,9-13,15-21,23
3299 atoms, 19 residues, 19 models selected
> ~surface #1.7
> surface #!1.7.1,3-7,9-13,15-23
> select #!1.7.1,3-7,9-13,15-23
3394 atoms, 20 residues, 20 models selected
> ~surface #1.7
> surface #!1.7.1,3-13,15-23
> select #!1.7.1,3-13,15-23
3424 atoms, 21 residues, 21 models selected
> ~surface #1.7
> surface #!1.7.1,3-13,15-23
> select #!1.7.1,3-13,15-23
3424 atoms, 21 residues, 21 models selected
> ~surface #1.7
> surface #!1.7.1,3-5,7-13,15-23
> select #!1.7.1,3-5,7-13,15-23
3367 atoms, 20 residues, 20 models selected
> ~surface #1.7
> surface #!1.7.15
> select #!1.7.15
57 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.1,15
> select #!1.7.1,15
107 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.1,4,15
> select #!1.7.1,4,15
368 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.1,4,15,17
> select #!1.7.1,4,15,17
446 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.1,4,15,17,21
> select #!1.7.1,4,15,17,21
485 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.1,4,10,15,17,21
> select #!1.7.1,4,10,15,17,21
814 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.1,4,10,15,17-18,21
> select #!1.7.1,4,10,15,17-18,21
892 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.1,4,10,13,15,17-18,21
> select #!1.7.1,4,10,13,15,17-18,21
966 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.1,4,10-11,13,15,17-18,21
> select #!1.7.1,4,10-11,13,15,17-18,21
1466 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.1,4,10-11,13,15,17-18,20-21
> select #!1.7.1,4,10-11,13,15,17-18,20-21
1704 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.1,4,10-11,13,15,17-21
> select #!1.7.1,4,10-11,13,15,17-21
1920 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.1,4-5,10-11,13,15,17-21
> select #!1.7.1,4-5,10-11,13,15,17-21
2002 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.1,4-5,10-13,15,17-21
> select #!1.7.1,4-5,10-13,15,17-21
2202 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.1,4-5,10-13,15,17-21,23
> select #!1.7.1,4-5,10-13,15,17-21,23
2236 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.1,4-5,10-13,15-21,23
> select #!1.7.1,4-5,10-13,15-21,23
2417 atoms, 15 residues, 15 models selected
> ~surface #1.7
> surface #!1.7.1,3-5,10-13,15-21,23
> select #!1.7.1,3-5,10-13,15-21,23
2506 atoms, 16 residues, 16 models selected
> ~surface #1.7
> surface #!1.7.1,3-5,7,10-13,15-21,23
> select #!1.7.1,3-5,7,10-13,15-21,23
3209 atoms, 17 residues, 17 models selected
> ~surface #1.7
> surface #!1.7.1,3-5,7,9-13,15-21,23
> select #!1.7.1,3-5,7,9-13,15-21,23
3242 atoms, 18 residues, 18 models selected
> ~surface #1.7
> surface #!1.7.1,3-5,7,9-13,15-23
> select #!1.7.1,3-5,7,9-13,15-23
3337 atoms, 19 residues, 19 models selected
> ~surface #1.7
> surface #!1.7.1,3-5,7-13,15-23
> select #!1.7.1,3-5,7-13,15-23
3367 atoms, 20 residues, 20 models selected
> ~surface #1.7
> surface #!1.7.1,3-5,7-13,15-23
> select #!1.7.1,3-5,7-13,15-23
3367 atoms, 20 residues, 20 models selected
> ~surface #1.7
> surface #!1.7.1,3,5,7-13,15-23
> select #!1.7.1,3,5,7-13,15-23
3106 atoms, 19 residues, 19 models selected
> ~surface #1.7
> surface #!1.7.15
> select #!1.7.15
57 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.1,15
> select #!1.7.1,15
107 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.1,15,17
> select #!1.7.1,15,17
185 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.1,15,17,21
> select #!1.7.1,15,17,21
224 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.1,10,15,17,21
> select #!1.7.1,10,15,17,21
553 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.1,10,15,17-18,21
> select #!1.7.1,10,15,17-18,21
631 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.1,10-11,15,17-18,21
> select #!1.7.1,10-11,15,17-18,21
1131 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.1,10-11,15,17-18,20-21
> select #!1.7.1,10-11,15,17-18,20-21
1369 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.1,10-11,15,17-21
> select #!1.7.1,10-11,15,17-21
1585 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.1,5,10-11,15,17-21
> select #!1.7.1,5,10-11,15,17-21
1667 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.1,5,10-12,15,17-21
> select #!1.7.1,5,10-12,15,17-21
1867 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.1,5,10-12,15,17-21,23
> select #!1.7.1,5,10-12,15,17-21,23
1901 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.1,5,10-12,15-21,23
> select #!1.7.1,5,10-12,15-21,23
2082 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.1,3,5,10-12,15-21,23
> select #!1.7.1,3,5,10-12,15-21,23
2171 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.1,3,5,7,10-12,15-21,23
> select #!1.7.1,3,5,7,10-12,15-21,23
2874 atoms, 15 residues, 15 models selected
> ~surface #1.7
> surface #!1.7.1,3,5,7-8,10-12,15-21,23
> select #!1.7.1,3,5,7-8,10-12,15-21,23
2904 atoms, 16 residues, 16 models selected
> ~surface #1.7
> surface #!1.7.1,3,5,7-12,15-21,23
> select #!1.7.1,3,5,7-12,15-21,23
2937 atoms, 17 residues, 17 models selected
> ~surface #1.7
> surface #!1.7.1,3,5,7-12,15-23
> select #!1.7.1,3,5,7-12,15-23
3032 atoms, 18 residues, 18 models selected
> ~surface #1.7
> surface #!1.7.1,3,5,7-13,15-23
> select #!1.7.1,3,5,7-13,15-23
3106 atoms, 19 residues, 19 models selected
> ~surface #1.7
> surface #!1.7.1,3,5,7-13,15-23
> select #!1.7.1,3,5,7-13,15-23
3106 atoms, 19 residues, 19 models selected
> ~surface #1.7
> surface #!1.7.3,5,7-13,15-23
> select #!1.7.3,5,7-13,15-23
3056 atoms, 18 residues, 18 models selected
> ~surface #1.7
> surface #!1.7.7
> select #!1.7.7
703 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.7,17
> select #!1.7.7,17
781 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.7,17,21
> select #!1.7.7,17,21
820 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.7-8,17,21
> select #!1.7.7-8,17,21
850 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.7-8,15,17,21
> select #!1.7.7-8,15,17,21
907 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.7-8,15,17-18,21
> select #!1.7.7-8,15,17-18,21
985 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.7-8,15,17-19,21
> select #!1.7.7-8,15,17-19,21
1201 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.7-8,13,15,17-19,21
> select #!1.7.7-8,13,15,17-19,21
1275 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.7-8,13,15-19,21
> select #!1.7.7-8,13,15-19,21
1456 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.5,7-8,13,15-19,21
> select #!1.7.5,7-8,13,15-19,21
1538 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.5,7-9,13,15-19,21
> select #!1.7.5,7-9,13,15-19,21
1571 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.5,7-10,13,15-19,21
> select #!1.7.5,7-10,13,15-19,21
1900 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.5,7-10,12-13,15-19,21
> select #!1.7.5,7-10,12-13,15-19,21
2100 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.5,7-13,15-19,21
> select #!1.7.5,7-13,15-19,21
2600 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.5,7-13,15-19,21-22
> select #!1.7.5,7-13,15-19,21-22
2695 atoms, 15 residues, 15 models selected
> ~surface #1.7
> surface #!1.7.5,7-13,15-19,21-23
> select #!1.7.5,7-13,15-19,21-23
2729 atoms, 16 residues, 16 models selected
> ~surface #1.7
> surface #!1.7.3,5,7-13,15-19,21-23
> select #!1.7.3,5,7-13,15-19,21-23
2818 atoms, 17 residues, 17 models selected
> ~surface #1.7
> surface #!1.7.3,5,7-13,15-23
> select #!1.7.3,5,7-13,15-23
3056 atoms, 18 residues, 18 models selected
> ~surface #1.7
> surface #!1.7.3,5,7-13,15-23
> select #!1.7.3,5,7-13,15-23
3056 atoms, 18 residues, 18 models selected
> ~surface #1.7
> surface #!1.7.5,7-13,15-23
> select #!1.7.5,7-13,15-23
2967 atoms, 17 residues, 17 models selected
> ~surface #1.7
> surface #!1.7.7
> select #!1.7.7
703 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.7,17
> select #!1.7.7,17
781 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.7,17,21
> select #!1.7.7,17,21
820 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.7,15,17,21
> select #!1.7.7,15,17,21
877 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.7,15,17-18,21
> select #!1.7.7,15,17-18,21
955 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.7,15,17-19,21
> select #!1.7.7,15,17-19,21
1171 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.7,13,15,17-19,21
> select #!1.7.7,13,15,17-19,21
1245 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.7,13,15-19,21
> select #!1.7.7,13,15-19,21
1426 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.7,9,13,15-19,21
> select #!1.7.7,9,13,15-19,21
1459 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,13,15-19,21
> select #!1.7.7,9-10,13,15-19,21
1788 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.5,7,9-10,13,15-19,21
> select #!1.7.5,7,9-10,13,15-19,21
1870 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.5,7,9-10,12-13,15-19,21
> select #!1.7.5,7,9-10,12-13,15-19,21
2070 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.5,7,9-13,15-19,21
> select #!1.7.5,7,9-13,15-19,21
2570 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.5,7,9-13,15-19,21-22
> select #!1.7.5,7,9-13,15-19,21-22
2665 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.5,7,9-13,15-19,21-23
> select #!1.7.5,7,9-13,15-19,21-23
2699 atoms, 15 residues, 15 models selected
> ~surface #1.7
> surface #!1.7.5,7-13,15-19,21-23
> select #!1.7.5,7-13,15-19,21-23
2729 atoms, 16 residues, 16 models selected
> ~surface #1.7
> surface #!1.7.5,7-13,15-23
> select #!1.7.5,7-13,15-23
2967 atoms, 17 residues, 17 models selected
> ~surface #1.7
> surface #!1.7.5,7-13,15-23
> select #!1.7.5,7-13,15-23
2967 atoms, 17 residues, 17 models selected
> ~surface #1.7
> surface #!1.7.7-13,15-23
> select #!1.7.7-13,15-23
2885 atoms, 16 residues, 16 models selected
> ~surface #1.7
> surface #!1.7.7
> select #!1.7.7
703 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.7,17
> select #!1.7.7,17
781 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.7,17,21
> select #!1.7.7,17,21
820 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.7,15,17,21
> select #!1.7.7,15,17,21
877 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.7,15,17-18,21
> select #!1.7.7,15,17-18,21
955 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.7,15,17-19,21
> select #!1.7.7,15,17-19,21
1171 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.7,13,15,17-19,21
> select #!1.7.7,13,15,17-19,21
1245 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.7,13,15-19,21
> select #!1.7.7,13,15-19,21
1426 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.7,9,13,15-19,21
> select #!1.7.7,9,13,15-19,21
1459 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,13,15-19,21
> select #!1.7.7,9-10,13,15-19,21
1788 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,12-13,15-19,21
> select #!1.7.7,9-10,12-13,15-19,21
1988 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,12-13,15-19,21-22
> select #!1.7.7,9-10,12-13,15-19,21-22
2083 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.7,9-13,15-19,21-22
> select #!1.7.7,9-13,15-19,21-22
2583 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.7,9-13,15-19,21-23
> select #!1.7.7,9-13,15-19,21-23
2617 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.7-13,15-19,21-23
> select #!1.7.7-13,15-19,21-23
2647 atoms, 15 residues, 15 models selected
> ~surface #1.7
> surface #!1.7.7-13,15-23
> select #!1.7.7-13,15-23
2885 atoms, 16 residues, 16 models selected
> ~surface #1.7
> surface #!1.7.7-13,15-23
> select #!1.7.7-13,15-23
2885 atoms, 16 residues, 16 models selected
> ~surface #1.7
> surface #!1.7.7-10,12-13,15-23
> select #!1.7.7-10,12-13,15-23
2385 atoms, 15 residues, 15 models selected
> ~surface #1.7
> surface #!1.7.7
> select #!1.7.7
703 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.7,17
> select #!1.7.7,17
781 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.7,17,21
> select #!1.7.7,17,21
820 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.7,15,17,21
> select #!1.7.7,15,17,21
877 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.7,15,17-18,21
> select #!1.7.7,15,17-18,21
955 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.7,15,17-19,21
> select #!1.7.7,15,17-19,21
1171 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.7,15-19,21
> select #!1.7.7,15-19,21
1352 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.7,12,15-19,21
> select #!1.7.7,12,15-19,21
1552 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.7,9,12,15-19,21
> select #!1.7.7,9,12,15-19,21
1585 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,12,15-19,21
> select #!1.7.7,9-10,12,15-19,21
1914 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,12,15-19,21-22
> select #!1.7.7,9-10,12,15-19,21-22
2009 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,12-13,15-19,21-22
> select #!1.7.7,9-10,12-13,15-19,21-22
2083 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,12-13,15-19,21-23
> select #!1.7.7,9-10,12-13,15-19,21-23
2117 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.7-10,12-13,15-19,21-23
> select #!1.7.7-10,12-13,15-19,21-23
2147 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.7-10,12-13,15-23
> select #!1.7.7-10,12-13,15-23
2385 atoms, 15 residues, 15 models selected
> ~surface #1.7
> surface #!1.7.7-10,12-13,15-23
> select #!1.7.7-10,12-13,15-23
2385 atoms, 15 residues, 15 models selected
> ~surface #1.7
> surface #!1.7.7-10,13,15-23
> select #!1.7.7-10,13,15-23
2185 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.7
> select #!1.7.7
703 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.7,17
> select #!1.7.7,17
781 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.7,17,21
> select #!1.7.7,17,21
820 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.7-8,17,21
> select #!1.7.7-8,17,21
850 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.7-8,15,17,21
> select #!1.7.7-8,15,17,21
907 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.7-8,15,17,19,21
> select #!1.7.7-8,15,17,19,21
1123 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.7-9,15,17,19,21
> select #!1.7.7-9,15,17,19,21
1156 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.7-10,15,17,19,21
> select #!1.7.7-10,15,17,19,21
1485 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.7-10,15,17-19,21
> select #!1.7.7-10,15,17-19,21
1563 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.7-10,15,17-19,21-22
> select #!1.7.7-10,15,17-19,21-22
1658 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.7-10,15-19,21-22
> select #!1.7.7-10,15-19,21-22
1839 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.7-10,15-19,21-23
> select #!1.7.7-10,15-19,21-23
1873 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.7-10,13,15-19,21-23
> select #!1.7.7-10,13,15-19,21-23
1947 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.7-10,13,15-23
> select #!1.7.7-10,13,15-23
2185 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.7-10,13,15-23
> select #!1.7.7-10,13,15-23
2185 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,13,15-23
> select #!1.7.7,9-10,13,15-23
2155 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.7
> select #!1.7.7
703 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.7,17
> select #!1.7.7,17
781 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.7,17,21
> select #!1.7.7,17,21
820 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.7,15,17,21
> select #!1.7.7,15,17,21
877 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.7,15,17,19,21
> select #!1.7.7,15,17,19,21
1093 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.7,9,15,17,19,21
> select #!1.7.7,9,15,17,19,21
1126 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,15,17,19,21
> select #!1.7.7,9-10,15,17,19,21
1455 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,15,17-19,21
> select #!1.7.7,9-10,15,17-19,21
1533 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,15,17-19,21-22
> select #!1.7.7,9-10,15,17-19,21-22
1628 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,15-19,21-22
> select #!1.7.7,9-10,15-19,21-22
1809 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,15-19,21-23
> select #!1.7.7,9-10,15-19,21-23
1843 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,13,15-19,21-23
> select #!1.7.7,9-10,13,15-19,21-23
1917 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,13,15-23
> select #!1.7.7,9-10,13,15-23
2155 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,13,15-23
> select #!1.7.7,9-10,13,15-23
2155 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.7,10,13,15-23
> select #!1.7.7,10,13,15-23
2122 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.7
> select #!1.7.7
703 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.7,17
> select #!1.7.7,17
781 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.7,17,21
> select #!1.7.7,17,21
820 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.7,15,17,21
> select #!1.7.7,15,17,21
877 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.7,15,17,19,21
> select #!1.7.7,15,17,19,21
1093 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.7,10,15,17,19,21
> select #!1.7.7,10,15,17,19,21
1422 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.7,10,15,17,19,21-22
> select #!1.7.7,10,15,17,19,21-22
1517 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.7,10,15,17-19,21-22
> select #!1.7.7,10,15,17-19,21-22
1595 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.7,10,15,17-19,21-23
> select #!1.7.7,10,15,17-19,21-23
1629 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.7,10,15-19,21-23
> select #!1.7.7,10,15-19,21-23
1810 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.7,10,13,15-19,21-23
> select #!1.7.7,10,13,15-19,21-23
1884 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.7,10,13,15-23
> select #!1.7.7,10,13,15-23
2122 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.7,10,13,15-23
> select #!1.7.7,10,13,15-23
2122 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-23
> select #!1.7.10,13,15-23
1419 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.17
> select #!1.7.17
78 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.17,21
> select #!1.7.17,21
117 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.15,17,21
> select #!1.7.15,17,21
174 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.15,17,19,21
> select #!1.7.15,17,19,21
390 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.10,15,17,19,21
> select #!1.7.10,15,17,19,21
719 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.10,15,17,19,21-22
> select #!1.7.10,15,17,19,21-22
814 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.10,15,17-19,21-22
> select #!1.7.10,15,17-19,21-22
892 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.10,15,17-19,21-23
> select #!1.7.10,15,17-19,21-23
926 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.10,15-19,21-23
> select #!1.7.10,15-19,21-23
1107 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-19,21-23
> select #!1.7.10,13,15-19,21-23
1181 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-23
> select #!1.7.10,13,15-23
1419 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-23
> select #!1.7.10,13,15-23
1419 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,20-23
> select #!1.7.10,13,15-18,20-23
1203 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.17
> select #!1.7.17
78 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.17,21
> select #!1.7.17,21
117 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.15,17,21
> select #!1.7.15,17,21
174 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.10,15,17,21
> select #!1.7.10,15,17,21
503 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.10,15,17,21-22
> select #!1.7.10,15,17,21-22
598 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.10,15,17-18,21-22
> select #!1.7.10,15,17-18,21-22
676 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.10,15,17-18,21-23
> select #!1.7.10,15,17-18,21-23
710 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.10,15-18,21-23
> select #!1.7.10,15-18,21-23
891 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,21-23
> select #!1.7.10,13,15-18,21-23
965 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,20-23
> select #!1.7.10,13,15-18,20-23
1203 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,20-23
> select #!1.7.10,13,15-18,20-23
1203 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,21-23
> select #!1.7.10,13,15-18,21-23
965 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.17
> select #!1.7.17
78 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.17,21
> select #!1.7.17,21
117 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.15,17,21
> select #!1.7.15,17,21
174 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.10,15,17,21
> select #!1.7.10,15,17,21
503 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.10,15,17,21-22
> select #!1.7.10,15,17,21-22
598 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.10,15,17-18,21-22
> select #!1.7.10,15,17-18,21-22
676 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.10,15,17-18,21-23
> select #!1.7.10,15,17-18,21-23
710 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.10,15-18,21-23
> select #!1.7.10,15-18,21-23
891 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,21-23
> select #!1.7.10,13,15-18,21-23
965 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,21-23
> select #!1.7.10,13,15-18,21-23
965 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,22-23
> select #!1.7.10,13,15-18,22-23
926 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.17
> select #!1.7.17
78 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.15,17
> select #!1.7.15,17
135 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.10,15,17
> select #!1.7.10,15,17
464 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.10,15,17,22
> select #!1.7.10,15,17,22
559 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.10,15,17-18,22
> select #!1.7.10,15,17-18,22
637 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.10,15,17-18,22-23
> select #!1.7.10,15,17-18,22-23
671 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.10,15-18,22-23
> select #!1.7.10,15-18,22-23
852 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,22-23
> select #!1.7.10,13,15-18,22-23
926 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,22-23
> select #!1.7.10,13,15-18,22-23
926 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,23
> select #!1.7.10,13,15-18,23
831 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.17
> select #!1.7.17
78 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.15,17
> select #!1.7.15,17
135 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.10,15,17
> select #!1.7.10,15,17
464 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.10,15,17,23
> select #!1.7.10,15,17,23
498 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.10,15,17-18,23
> select #!1.7.10,15,17-18,23
576 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.10,15-18,23
> select #!1.7.10,15-18,23
757 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,23
> select #!1.7.10,13,15-18,23
831 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,23
> select #!1.7.10,13,15-18,23
831 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18
> select #!1.7.10,13,15-18
797 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.17
> select #!1.7.17
78 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.15,17
> select #!1.7.15,17
135 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.10,15,17
> select #!1.7.10,15,17
464 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.10,15,17-18
> select #!1.7.10,15,17-18
542 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.10,15-18
> select #!1.7.10,15-18
723 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18
> select #!1.7.10,13,15-18
797 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18
> select #!1.7.10,13,15-18
797 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.10,13,16-18
> select #!1.7.10,13,16-18
740 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.17
> select #!1.7.17
78 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.10,17
> select #!1.7.10,17
407 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.10,17-18
> select #!1.7.10,17-18
485 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.10,16-18
> select #!1.7.10,16-18
666 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.10,13,16-18
> select #!1.7.10,13,16-18
740 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.10,13,16-18
> select #!1.7.10,13,16-18
740 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.10,13,17-18
> select #!1.7.10,13,17-18
559 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.13
> select #!1.7.13
74 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.13,17
> select #!1.7.13,17
152 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.10,13,17
> select #!1.7.10,13,17
481 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.10,13,17-18
> select #!1.7.10,13,17-18
559 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.10,13,17-18
> select #!1.7.10,13,17-18
559 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.10,13,18
> select #!1.7.10,13,18
481 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.13
> select #!1.7.13
74 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.10,13
> select #!1.7.10,13
403 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.10,13,18
> select #!1.7.10,13,18
481 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.10,13,18
> select #!1.7.10,13,18
481 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.10,13
> select #!1.7.10,13
403 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.13
> select #!1.7.13
74 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.10,13
> select #!1.7.10,13
403 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.10,13
> select #!1.7.10,13
403 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.10
> select #!1.7.10
329 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.10
> select #!1.7.10
329 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.10
> select #!1.7.10
329 atoms, 1 residue, 1 model selected
> delete bonds (#!1.7.1-13,15-23 & sel)
> ~surface #1.7
> surface #!1.7.14
> select #!1.7.14
2590 atoms, 1 residue, 1 model selected
> surface (#!1.7.14 & sel)
> transparency (#!1.7.14 & sel) 70
> save "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/edited/cavity all.cxs"
——— End of log from Thu Mar 20 17:02:46 2025 ———
opened ChimeraX session
> view #!1.5.7 @ zoom 0.75
moved plane near -22.69330160094299 [0.01138538 0.66073547 0.75053244]
moved plane far -22.69330160094299 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.7
> view #!1.5.7,11 @ zoom 0.75
moved plane near -36.983873713472015 [0.01138538 0.66073547 0.75053244]
moved plane far -36.983873713472015 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.7,11
> delete atoms (#!1.7.14 & sel)
> delete bonds (#!1.7.14 & sel)
> view #!1.5.2 @ zoom 0.75
moved plane near -23.27890901860643 [0.01138538 0.66073547 0.75053244]
moved plane far -23.27890901860643 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2
> view #!1.5.2,10 @ zoom 0.75
moved plane near -42.669462590212824 [0.01138538 0.66073547 0.75053244]
moved plane far -42.669462590212824 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,10
> view #!1.5.2,4,10 @ zoom 0.75
moved plane near -42.71031972032355 [0.01138538 0.66073547 0.75053244]
moved plane far -42.71031972032355 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,10
> view #!1.5.2,4,10,20 @ zoom 0.75
moved plane near -54.63701850814689 [0.01138538 0.66073547 0.75053244]
moved plane far -54.63701850814689 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,10,20
> view #!1.5.2,4,10,19-20 @ zoom 0.75
moved plane near -54.75644841686782 [0.01138538 0.66073547 0.75053244]
moved plane far -54.75644841686782 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,10,19-20
> view #!1.5.2,4,10,12,19-20 @ zoom 0.75
moved plane near -55.237390329722324 [0.01138538 0.66073547 0.75053244]
moved plane far -55.237390329722324 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,10,12,19-20
> view #!1.5.2,4,10,12,16,19-20 @ zoom 0.75
moved plane near -55.64829590783935 [0.01138538 0.66073547 0.75053244]
moved plane far -55.64829590783935 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,10,12,16,19-20
> delete atoms #1#2.2#!2
> view #!1.3.14 @ zoom 0.75
moved plane near -35.44283129095797 [0.01138538 0.66073547 0.75053244]
moved plane far -35.44283129095797 [0.01138538 0.66073547 0.75053244]
> ~surface #1.3
> surface #!1.3.14
> view #!1.2.14 @ zoom 0.75
moved plane near -35.44283129095797 [0.01138538 0.66073547 0.75053244]
moved plane far -35.44283129095797 [0.01138538 0.66073547 0.75053244]
> ~surface #1.2
> surface #!1.2.14
> view #!1.2.14 @ zoom 0.75
moved plane near -35.44283129095797 [0.01138538 0.66073547 0.75053244]
moved plane far -35.44283129095797 [0.01138538 0.66073547 0.75053244]
> ~surface #1.2
> surface #!1.2.14
> view #!1.2.14 @ zoom 0.75
moved plane near -35.44283129095797 [0.01138538 0.66073547 0.75053244]
moved plane far -35.44283129095797 [0.01138538 0.66073547 0.75053244]
> ~surface #1.2
> surface #!1.2.14
> view #!1.2.14 @ zoom 0.75
moved plane near -35.44283129095797 [0.01138538 0.66073547 0.75053244]
moved plane far -35.44283129095797 [0.01138538 0.66073547 0.75053244]
> ~surface #1.2
> surface #!1.2.14
> view #!1.2.14 @ zoom 0.75
moved plane near -35.44283129095797 [0.01138538 0.66073547 0.75053244]
moved plane far -35.44283129095797 [0.01138538 0.66073547 0.75053244]
> ~surface #1.2
> surface #!1.2.14
> view #!1.2.14 @ zoom 0.75
moved plane near -35.44283129095797 [0.01138538 0.66073547 0.75053244]
moved plane far -35.44283129095797 [0.01138538 0.66073547 0.75053244]
> ~surface #1.2
> surface #!1.2.14
> view #!1.2.14 @ zoom 0.75
moved plane near -35.44283129095797 [0.01138538 0.66073547 0.75053244]
moved plane far -35.44283129095797 [0.01138538 0.66073547 0.75053244]
> ~surface #1.2
> surface #!1.2.14
> view #!1.2.14 @ zoom 0.75
moved plane near -35.44283129095797 [0.01138538 0.66073547 0.75053244]
moved plane far -35.44283129095797 [0.01138538 0.66073547 0.75053244]
> ~surface #1.2
> surface #!1.2.14
> view #!1.2.14 @ zoom 0.75
moved plane near -35.44283129095797 [0.01138538 0.66073547 0.75053244]
moved plane far -35.44283129095797 [0.01138538 0.66073547 0.75053244]
> ~surface #1.2
> surface #!1.2.14
> view #!1.2.14 @ zoom 0.75
moved plane near -35.44283129095797 [0.01138538 0.66073547 0.75053244]
moved plane far -35.44283129095797 [0.01138538 0.66073547 0.75053244]
> ~surface #1.2
> surface #!1.2.14
> view #!1.2.14 @ zoom 0.75
moved plane near -35.44283129095797 [0.01138538 0.66073547 0.75053244]
moved plane far -35.44283129095797 [0.01138538 0.66073547 0.75053244]
> ~surface #1.2
> surface #!1.2.14
> view #!1.2.14 @ zoom 0.75
moved plane near -35.44283129095797 [0.01138538 0.66073547 0.75053244]
moved plane far -35.44283129095797 [0.01138538 0.66073547 0.75053244]
> ~surface #1.2
> surface #!1.2.14
> view #!1.5.4 @ zoom 0.75
moved plane near -17.862213231901844 [0.01138538 0.66073547 0.75053244]
moved plane far -17.862213231901844 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4
> view #!1.5.4,12 @ zoom 0.75
moved plane near -33.25582706228434 [0.01138538 0.66073547 0.75053244]
moved plane far -33.25582706228434 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12
> view #!1.5.4,12,20 @ zoom 0.75
moved plane near -45.08888388202586 [0.01138538 0.66073547 0.75053244]
moved plane far -45.08888388202586 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12,20
> view #!1.5.4,12,16,20 @ zoom 0.75
moved plane near -45.50164623009769 [0.01138538 0.66073547 0.75053244]
moved plane far -45.50164623009769 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12,16,20
> view #!1.5.4,10,12,16,20 @ zoom 0.75
moved plane near -48.02754560476859 [0.01138538 0.66073547 0.75053244]
moved plane far -48.02754560476859 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,10,12,16,20
> view #!1.5.4,10,12,16,19-20 @ zoom 0.75
moved plane near -49.19505059198203 [0.01138538 0.66073547 0.75053244]
moved plane far -49.19505059198203 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,10,12,16,19-20
> view #!1.5.2,4,10,12,16,19-20 @ zoom 0.75
moved plane near -55.64829590783935 [0.01138538 0.66073547 0.75053244]
moved plane far -55.64829590783935 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,10,12,16,19-20
> view #!1.5.4 @ zoom 0.75
moved plane near -17.862213231901844 [0.01138538 0.66073547 0.75053244]
moved plane far -17.862213231901844 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4
> view #!1.5.4,12 @ zoom 0.75
moved plane near -33.25582706228434 [0.01138538 0.66073547 0.75053244]
moved plane far -33.25582706228434 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12
> view #!1.5.4,12,20 @ zoom 0.75
moved plane near -45.08888388202586 [0.01138538 0.66073547 0.75053244]
moved plane far -45.08888388202586 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12,20
> view #!1.5.4,12,16,20 @ zoom 0.75
moved plane near -45.50164623009769 [0.01138538 0.66073547 0.75053244]
moved plane far -45.50164623009769 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12,16,20
> view #!1.5.4,10,12,16,20 @ zoom 0.75
moved plane near -48.02754560476859 [0.01138538 0.66073547 0.75053244]
moved plane far -48.02754560476859 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,10,12,16,20
> view #!1.5.4,10,12,16,19-20 @ zoom 0.75
moved plane near -49.19505059198203 [0.01138538 0.66073547 0.75053244]
moved plane far -49.19505059198203 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,10,12,16,19-20
> view #!1.5.2,4,10,12,16,19-20 @ zoom 0.75
moved plane near -55.64829590783935 [0.01138538 0.66073547 0.75053244]
moved plane far -55.64829590783935 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,10,12,16,19-20
> view #!1.5.2,4,10,12,16,19-20 @ zoom 0.75
moved plane near -55.64829590783935 [0.01138538 0.66073547 0.75053244]
moved plane far -55.64829590783935 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,10,12,16,19-20
> view #!1.5.4 @ zoom 0.75
moved plane near -17.862213231901844 [0.01138538 0.66073547 0.75053244]
moved plane far -17.862213231901844 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4
> view #!1.5.4,12 @ zoom 0.75
moved plane near -33.25582706228434 [0.01138538 0.66073547 0.75053244]
moved plane far -33.25582706228434 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12
> view #!1.5.4,12,20 @ zoom 0.75
moved plane near -45.08888388202586 [0.01138538 0.66073547 0.75053244]
moved plane far -45.08888388202586 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12,20
> view #!1.5.4,12,16,20 @ zoom 0.75
moved plane near -45.50164623009769 [0.01138538 0.66073547 0.75053244]
moved plane far -45.50164623009769 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12,16,20
> view #!1.5.4,10,12,16,20 @ zoom 0.75
moved plane near -48.02754560476859 [0.01138538 0.66073547 0.75053244]
moved plane far -48.02754560476859 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,10,12,16,20
> view #!1.5.4,10,12,16,19-20 @ zoom 0.75
moved plane near -49.19505059198203 [0.01138538 0.66073547 0.75053244]
moved plane far -49.19505059198203 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,10,12,16,19-20
> view #!1.5.2,4,10,12,16,19-20 @ zoom 0.75
moved plane near -55.64829590783935 [0.01138538 0.66073547 0.75053244]
moved plane far -55.64829590783935 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,10,12,16,19-20
> view #!1.5.4 @ zoom 0.75
moved plane near -17.862213231901844 [0.01138538 0.66073547 0.75053244]
moved plane far -17.862213231901844 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4
> view #!1.5.4,12 @ zoom 0.75
moved plane near -33.25582706228434 [0.01138538 0.66073547 0.75053244]
moved plane far -33.25582706228434 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12
> view #!1.5.4,12,20 @ zoom 0.75
moved plane near -45.08888388202586 [0.01138538 0.66073547 0.75053244]
moved plane far -45.08888388202586 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12,20
> view #!1.5.4,12,16,20 @ zoom 0.75
moved plane near -45.50164623009769 [0.01138538 0.66073547 0.75053244]
moved plane far -45.50164623009769 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12,16,20
> view #!1.5.4,10,12,16,20 @ zoom 0.75
moved plane near -48.02754560476859 [0.01138538 0.66073547 0.75053244]
moved plane far -48.02754560476859 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,10,12,16,20
> view #!1.5.4,10,12,16,19-20 @ zoom 0.75
moved plane near -49.19505059198203 [0.01138538 0.66073547 0.75053244]
moved plane far -49.19505059198203 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,10,12,16,19-20
> view #!1.5.2,4,10,12,16,19-20 @ zoom 0.75
moved plane near -55.64829590783935 [0.01138538 0.66073547 0.75053244]
moved plane far -55.64829590783935 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,10,12,16,19-20
> view #!1.5.4 @ zoom 0.75
moved plane near -17.862213231901844 [0.01138538 0.66073547 0.75053244]
moved plane far -17.862213231901844 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4
> view #!1.5.4,12 @ zoom 0.75
moved plane near -33.25582706228434 [0.01138538 0.66073547 0.75053244]
moved plane far -33.25582706228434 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12
> view #!1.5.4,12,20 @ zoom 0.75
moved plane near -45.08888388202586 [0.01138538 0.66073547 0.75053244]
moved plane far -45.08888388202586 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12,20
> view #!1.5.4,12,16,20 @ zoom 0.75
moved plane near -45.50164623009769 [0.01138538 0.66073547 0.75053244]
moved plane far -45.50164623009769 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12,16,20
> view #!1.5.4,10,12,16,20 @ zoom 0.75
moved plane near -48.02754560476859 [0.01138538 0.66073547 0.75053244]
moved plane far -48.02754560476859 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,10,12,16,20
> view #!1.5.4,10,12,16,19-20 @ zoom 0.75
moved plane near -49.19505059198203 [0.01138538 0.66073547 0.75053244]
moved plane far -49.19505059198203 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,10,12,16,19-20
> view #!1.5.2,4,10,12,16,19-20 @ zoom 0.75
moved plane near -55.64829590783935 [0.01138538 0.66073547 0.75053244]
moved plane far -55.64829590783935 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,10,12,16,19-20
> view #!1.5.2,4,12,16,19-20 @ zoom 0.75
moved plane near -53.41365498261092 [0.01138538 0.66073547 0.75053244]
moved plane far -53.41365498261092 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,12,16,19-20
> view #!1.5.4 @ zoom 0.75
moved plane near -17.862213231901844 [0.01138538 0.66073547 0.75053244]
moved plane far -17.862213231901844 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4
> view #!1.5.4,12 @ zoom 0.75
moved plane near -33.25582706228434 [0.01138538 0.66073547 0.75053244]
moved plane far -33.25582706228434 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12
> view #!1.5.4,12,20 @ zoom 0.75
moved plane near -45.08888388202586 [0.01138538 0.66073547 0.75053244]
moved plane far -45.08888388202586 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12,20
> view #!1.5.4,12,16,20 @ zoom 0.75
moved plane near -45.50164623009769 [0.01138538 0.66073547 0.75053244]
moved plane far -45.50164623009769 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12,16,20
> view #!1.5.4,12,16,19-20 @ zoom 0.75
moved plane near -46.93450053566775 [0.01138538 0.66073547 0.75053244]
moved plane far -46.93450053566775 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12,16,19-20
> view #!1.5.2,4,12,16,19-20 @ zoom 0.75
moved plane near -53.41365498261092 [0.01138538 0.66073547 0.75053244]
moved plane far -53.41365498261092 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,12,16,19-20
> view #!1.5.2,4,12,16,19-20 @ zoom 0.75
moved plane near -53.41365498261092 [0.01138538 0.66073547 0.75053244]
moved plane far -53.41365498261092 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,12,16,19-20
> view #!1.5.2,4,12,16,19-20 @ zoom 0.75
moved plane near -53.41365498261092 [0.01138538 0.66073547 0.75053244]
moved plane far -53.41365498261092 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,12,16,19-20
> view #!1.5.4 @ zoom 0.75
moved plane near -17.862213231901844 [0.01138538 0.66073547 0.75053244]
moved plane far -17.862213231901844 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4
> view #!1.5.4,12 @ zoom 0.75
moved plane near -33.25582706228434 [0.01138538 0.66073547 0.75053244]
moved plane far -33.25582706228434 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12
> view #!1.5.4,12,20 @ zoom 0.75
moved plane near -45.08888388202586 [0.01138538 0.66073547 0.75053244]
moved plane far -45.08888388202586 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12,20
> view #!1.5.4,12,16,20 @ zoom 0.75
moved plane near -45.50164623009769 [0.01138538 0.66073547 0.75053244]
moved plane far -45.50164623009769 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12,16,20
> view #!1.5.4,12,16,19-20 @ zoom 0.75
moved plane near -46.93450053566775 [0.01138538 0.66073547 0.75053244]
moved plane far -46.93450053566775 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,12,16,19-20
> view #!1.5.2,4,12,16,19-20 @ zoom 0.75
moved plane near -53.41365498261092 [0.01138538 0.66073547 0.75053244]
moved plane far -53.41365498261092 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,12,16,19-20
> view #!1.5.2,4,16,19-20 @ zoom 0.75
moved plane near -53.08273093417345 [0.01138538 0.66073547 0.75053244]
moved plane far -53.08273093417345 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,16,19-20
> view #!1.5.4 @ zoom 0.75
moved plane near -17.862213231901844 [0.01138538 0.66073547 0.75053244]
moved plane far -17.862213231901844 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4
> view #!1.5.4,20 @ zoom 0.75
moved plane near -44.768739341473214 [0.01138538 0.66073547 0.75053244]
moved plane far -44.768739341473214 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,20
> view #!1.5.4,16,20 @ zoom 0.75
moved plane near -45.17151388600242 [0.01138538 0.66073547 0.75053244]
moved plane far -45.17151388600242 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,16,20
> view #!1.5.4,16,19-20 @ zoom 0.75
moved plane near -45.27968471071474 [0.01138538 0.66073547 0.75053244]
moved plane far -45.27968471071474 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,16,19-20
> view #!1.5.2,4,16,19-20 @ zoom 0.75
moved plane near -53.08273093417345 [0.01138538 0.66073547 0.75053244]
moved plane far -53.08273093417345 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,16,19-20
> view #!1.5.2,4,16,19-20 @ zoom 0.75
moved plane near -53.08273093417345 [0.01138538 0.66073547 0.75053244]
moved plane far -53.08273093417345 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,16,19-20
> view #!1.5.2,4,16,19-20 @ zoom 0.75
moved plane near -53.08273093417345 [0.01138538 0.66073547 0.75053244]
moved plane far -53.08273093417345 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,16,19-20
> view #!1.5.4 @ zoom 0.75
moved plane near -17.862213231901844 [0.01138538 0.66073547 0.75053244]
moved plane far -17.862213231901844 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4
> view #!1.5.4,20 @ zoom 0.75
moved plane near -44.768739341473214 [0.01138538 0.66073547 0.75053244]
moved plane far -44.768739341473214 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,20
> view #!1.5.4,16,20 @ zoom 0.75
moved plane near -45.17151388600242 [0.01138538 0.66073547 0.75053244]
moved plane far -45.17151388600242 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,16,20
> view #!1.5.4,16,19-20 @ zoom 0.75
moved plane near -45.27968471071474 [0.01138538 0.66073547 0.75053244]
moved plane far -45.27968471071474 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,16,19-20
> view #!1.5.2,4,16,19-20 @ zoom 0.75
moved plane near -53.08273093417345 [0.01138538 0.66073547 0.75053244]
moved plane far -53.08273093417345 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,16,19-20
> view #!1.5.4 @ zoom 0.75
moved plane near -17.862213231901844 [0.01138538 0.66073547 0.75053244]
moved plane far -17.862213231901844 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4
> view #!1.5.4,20 @ zoom 0.75
moved plane near -44.768739341473214 [0.01138538 0.66073547 0.75053244]
moved plane far -44.768739341473214 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,20
> view #!1.5.4,16,20 @ zoom 0.75
moved plane near -45.17151388600242 [0.01138538 0.66073547 0.75053244]
moved plane far -45.17151388600242 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,16,20
> view #!1.5.4,16,19-20 @ zoom 0.75
moved plane near -45.27968471071474 [0.01138538 0.66073547 0.75053244]
moved plane far -45.27968471071474 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,16,19-20
> view #!1.5.2,4,16,19-20 @ zoom 0.75
moved plane near -53.08273093417345 [0.01138538 0.66073547 0.75053244]
moved plane far -53.08273093417345 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,16,19-20
> view #!1.5.4 @ zoom 0.75
moved plane near -17.862213231901844 [0.01138538 0.66073547 0.75053244]
moved plane far -17.862213231901844 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4
> view #!1.5.4,20 @ zoom 0.75
moved plane near -44.768739341473214 [0.01138538 0.66073547 0.75053244]
moved plane far -44.768739341473214 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,20
> view #!1.5.4,16,20 @ zoom 0.75
moved plane near -45.17151388600242 [0.01138538 0.66073547 0.75053244]
moved plane far -45.17151388600242 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,16,20
> view #!1.5.4,16,19-20 @ zoom 0.75
moved plane near -45.27968471071474 [0.01138538 0.66073547 0.75053244]
moved plane far -45.27968471071474 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.4,16,19-20
> view #!1.5.2,4,16,19-20 @ zoom 0.75
moved plane near -53.08273093417345 [0.01138538 0.66073547 0.75053244]
moved plane far -53.08273093417345 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,16,19-20
> view #!1.5.2,4,19-20 @ zoom 0.75
moved plane near -52.68182214857669 [0.01138538 0.66073547 0.75053244]
moved plane far -52.68182214857669 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,19-20
> view #!1.5.2 @ zoom 0.75
moved plane near -23.27890901860643 [0.01138538 0.66073547 0.75053244]
moved plane far -23.27890901860643 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2
> view #!1.5.2,4 @ zoom 0.75
moved plane near -26.99041243788992 [0.01138538 0.66073547 0.75053244]
moved plane far -26.99041243788992 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4
> view #!1.5.2,4,20 @ zoom 0.75
moved plane near -52.573473497406155 [0.01138538 0.66073547 0.75053244]
moved plane far -52.573473497406155 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,20
> view #!1.5.2,4,19-20 @ zoom 0.75
moved plane near -52.68182214857669 [0.01138538 0.66073547 0.75053244]
moved plane far -52.68182214857669 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,19-20
> view #!1.5.2,4,19-20 @ zoom 0.75
moved plane near -52.68182214857669 [0.01138538 0.66073547 0.75053244]
moved plane far -52.68182214857669 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,19-20
> view #!1.5.2,4,19 @ zoom 0.75
moved plane near -48.55636394663091 [0.01138538 0.66073547 0.75053244]
moved plane far -48.55636394663091 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,19
> view #!1.5.2 @ zoom 0.75
moved plane near -23.27890901860643 [0.01138538 0.66073547 0.75053244]
moved plane far -23.27890901860643 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2
> view #!1.5.2,4 @ zoom 0.75
moved plane near -26.99041243788992 [0.01138538 0.66073547 0.75053244]
moved plane far -26.99041243788992 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4
> view #!1.5.2,4,19 @ zoom 0.75
moved plane near -48.55636394663091 [0.01138538 0.66073547 0.75053244]
moved plane far -48.55636394663091 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,19
> view #!1.5.2,4,19 @ zoom 0.75
moved plane near -48.55636394663091 [0.01138538 0.66073547 0.75053244]
moved plane far -48.55636394663091 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4,19
> view #!1.5.2,4 @ zoom 0.75
moved plane near -26.99041243788992 [0.01138538 0.66073547 0.75053244]
moved plane far -26.99041243788992 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4
> view #!1.5.2 @ zoom 0.75
moved plane near -23.27890901860643 [0.01138538 0.66073547 0.75053244]
moved plane far -23.27890901860643 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2
> view #!1.5.2,4 @ zoom 0.75
moved plane near -26.99041243788992 [0.01138538 0.66073547 0.75053244]
moved plane far -26.99041243788992 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4
> view #!1.5.2,4 @ zoom 0.75
moved plane near -26.99041243788992 [0.01138538 0.66073547 0.75053244]
moved plane far -26.99041243788992 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4
> view #!1.5.2 @ zoom 0.75
moved plane near -23.27890901860643 [0.01138538 0.66073547 0.75053244]
moved plane far -23.27890901860643 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2
> view #!1.5.2,4 @ zoom 0.75
moved plane near -26.99041243788992 [0.01138538 0.66073547 0.75053244]
moved plane far -26.99041243788992 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4
> view #!1.5.2 @ zoom 0.75
moved plane near -23.27890901860643 [0.01138538 0.66073547 0.75053244]
moved plane far -23.27890901860643 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2
> view #!1.5.2,4 @ zoom 0.75
moved plane near -26.99041243788992 [0.01138538 0.66073547 0.75053244]
moved plane far -26.99041243788992 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4
> view #!1.5.2 @ zoom 0.75
moved plane near -23.27890901860643 [0.01138538 0.66073547 0.75053244]
moved plane far -23.27890901860643 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2
> view #!1.5.2,4 @ zoom 0.75
moved plane near -26.99041243788992 [0.01138538 0.66073547 0.75053244]
moved plane far -26.99041243788992 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4
> view #!1.5.2 @ zoom 0.75
moved plane near -23.27890901860643 [0.01138538 0.66073547 0.75053244]
moved plane far -23.27890901860643 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2
> view #!1.5.2,4 @ zoom 0.75
moved plane near -26.99041243788992 [0.01138538 0.66073547 0.75053244]
moved plane far -26.99041243788992 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4
> view #!1.5.2 @ zoom 0.75
moved plane near -23.27890901860643 [0.01138538 0.66073547 0.75053244]
moved plane far -23.27890901860643 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2
> view #!1.5.2,4 @ zoom 0.75
moved plane near -26.99041243788992 [0.01138538 0.66073547 0.75053244]
moved plane far -26.99041243788992 [0.01138538 0.66073547 0.75053244]
> ~surface #1.5
> surface #!1.5.2,4
> view #!1.6.2,4,6-11,15-16,18-21,23 @ zoom 0.75
moved plane near -56.83737801901441 [0.01138538 0.66073547 0.75053244]
moved plane far -56.83737801901441 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.2,4,6-11,15-16,18-21,23
> view #!1.6.18 @ zoom 0.75
moved plane near -15.23842717670122 [0.01138538 0.66073547 0.75053244]
moved plane far -15.23842717670122 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.18,21,23 @ zoom 0.75
moved plane near -32.109720471015144 [0.01138538 0.66073547 0.75053244]
moved plane far -32.109720471015144 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21,23
> view #!1.6.6,18,21,23 @ zoom 0.75
moved plane near -42.56064103631132 [0.01138538 0.66073547 0.75053244]
moved plane far -42.56064103631132 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.6,18,21,23
> view #!1.6.6-7,18,21,23 @ zoom 0.75
moved plane near -48.73513100133585 [0.01138538 0.66073547 0.75053244]
moved plane far -48.73513100133585 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.6-7,18,21,23
> view #!1.6.6-7,11,18,21,23 @ zoom 0.75
moved plane near -49.62580910387558 [0.01138538 0.66073547 0.75053244]
moved plane far -49.62580910387558 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.6-7,11,18,21,23
> view #!1.6.6-7,11,15,18,21,23 @ zoom 0.75
moved plane near -50.735569832409396 [0.01138538 0.66073547 0.75053244]
moved plane far -50.735569832409396 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.6-7,11,15,18,21,23
> view #!1.6.6-7,11,15-16,18,21,23 @ zoom 0.75
moved plane near -50.735569832409396 [0.01138538 0.66073547 0.75053244]
moved plane far -50.735569832409396 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.6-7,11,15-16,18,21,23
> view #!1.6.6-7,11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -50.735569832409396 [0.01138538 0.66073547 0.75053244]
moved plane far -50.735569832409396 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.6-7,11,15-16,18-19,21,23
> view #!1.6.6-7,9,11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -50.735569832409396 [0.01138538 0.66073547 0.75053244]
moved plane far -50.735569832409396 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.6-7,9,11,15-16,18-19,21,23
> view #!1.6.4,6-7,9,11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -51.29413914120386 [0.01138538 0.66073547 0.75053244]
moved plane far -51.29413914120386 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.4,6-7,9,11,15-16,18-19,21,23
> view #!1.6.2,4,6-7,9,11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -54.52519034002165 [0.01138538 0.66073547 0.75053244]
moved plane far -54.52519034002165 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.2,4,6-7,9,11,15-16,18-19,21,23
> view #!1.6.2,4,6-7,9-11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -56.4490338043615 [0.01138538 0.66073547 0.75053244]
moved plane far -56.4490338043615 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.2,4,6-7,9-11,15-16,18-19,21,23
> view #!1.6.2,4,6-7,9-11,15-16,18-21,23 @ zoom 0.75
moved plane near -56.58577943618982 [0.01138538 0.66073547 0.75053244]
moved plane far -56.58577943618982 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.2,4,6-7,9-11,15-16,18-21,23
> view #!1.6.2,4,6-11,15-16,18-21,23 @ zoom 0.75
moved plane near -56.83737801901441 [0.01138538 0.66073547 0.75053244]
moved plane far -56.83737801901441 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.2,4,6-11,15-16,18-21,23
> view #!1.6.2,4,6-11,15-16,18-21,23 @ zoom 0.75
moved plane near -56.83737801901441 [0.01138538 0.66073547 0.75053244]
moved plane far -56.83737801901441 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.2,4,6-11,15-16,18-21,23
> view #!1.6.4,6-11,15-16,18-21,23 @ zoom 0.75
moved plane near -53.75011147110206 [0.01138538 0.66073547 0.75053244]
moved plane far -53.75011147110206 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.4,6-11,15-16,18-21,23
> view #!1.6.18 @ zoom 0.75
moved plane near -15.23842717670122 [0.01138538 0.66073547 0.75053244]
moved plane far -15.23842717670122 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.18,21,23 @ zoom 0.75
moved plane near -32.109720471015144 [0.01138538 0.66073547 0.75053244]
moved plane far -32.109720471015144 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21,23
> view #!1.6.6,18,21,23 @ zoom 0.75
moved plane near -42.56064103631132 [0.01138538 0.66073547 0.75053244]
moved plane far -42.56064103631132 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.6,18,21,23
> view #!1.6.6-7,18,21,23 @ zoom 0.75
moved plane near -48.73513100133585 [0.01138538 0.66073547 0.75053244]
moved plane far -48.73513100133585 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.6-7,18,21,23
> view #!1.6.6-7,11,18,21,23 @ zoom 0.75
moved plane near -49.62580910387558 [0.01138538 0.66073547 0.75053244]
moved plane far -49.62580910387558 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.6-7,11,18,21,23
> view #!1.6.6-7,11,15,18,21,23 @ zoom 0.75
moved plane near -50.735569832409396 [0.01138538 0.66073547 0.75053244]
moved plane far -50.735569832409396 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.6-7,11,15,18,21,23
> view #!1.6.6-7,11,15-16,18,21,23 @ zoom 0.75
moved plane near -50.735569832409396 [0.01138538 0.66073547 0.75053244]
moved plane far -50.735569832409396 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.6-7,11,15-16,18,21,23
> view #!1.6.6-7,11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -50.735569832409396 [0.01138538 0.66073547 0.75053244]
moved plane far -50.735569832409396 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.6-7,11,15-16,18-19,21,23
> view #!1.6.6-7,9,11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -50.735569832409396 [0.01138538 0.66073547 0.75053244]
moved plane far -50.735569832409396 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.6-7,9,11,15-16,18-19,21,23
> view #!1.6.4,6-7,9,11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -51.29413914120386 [0.01138538 0.66073547 0.75053244]
moved plane far -51.29413914120386 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.4,6-7,9,11,15-16,18-19,21,23
> view #!1.6.4,6-7,9-11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -53.585803421280694 [0.01138538 0.66073547 0.75053244]
moved plane far -53.585803421280694 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.4,6-7,9-11,15-16,18-19,21,23
> view #!1.6.4,6-7,9-11,15-16,18-21,23 @ zoom 0.75
moved plane near -53.72254905310903 [0.01138538 0.66073547 0.75053244]
moved plane far -53.72254905310903 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.4,6-7,9-11,15-16,18-21,23
> view #!1.6.4,6-11,15-16,18-21,23 @ zoom 0.75
moved plane near -53.75011147110206 [0.01138538 0.66073547 0.75053244]
moved plane far -53.75011147110206 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.4,6-11,15-16,18-21,23
> view #!1.6.4,6-11,15-16,18-21,23 @ zoom 0.75
moved plane near -53.75011147110206 [0.01138538 0.66073547 0.75053244]
moved plane far -53.75011147110206 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.4,6-11,15-16,18-21,23
> view #!1.6.4,7-11,15-16,18-21,23 @ zoom 0.75
moved plane near -51.63080631437722 [0.01138538 0.66073547 0.75053244]
moved plane far -51.63080631437722 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.4,7-11,15-16,18-21,23
> view #!1.6.18 @ zoom 0.75
moved plane near -15.23842717670122 [0.01138538 0.66073547 0.75053244]
moved plane far -15.23842717670122 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.18,21,23 @ zoom 0.75
moved plane near -32.109720471015144 [0.01138538 0.66073547 0.75053244]
moved plane far -32.109720471015144 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21,23
> view #!1.6.7,18,21,23 @ zoom 0.75
moved plane near -43.73475591090263 [0.01138538 0.66073547 0.75053244]
moved plane far -43.73475591090263 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,18,21,23
> view #!1.6.7,11,18,21,23 @ zoom 0.75
moved plane near -44.65860365868135 [0.01138538 0.66073547 0.75053244]
moved plane far -44.65860365868135 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,11,18,21,23
> view #!1.6.7,11,15,18,21,23 @ zoom 0.75
moved plane near -45.777818283703425 [0.01138538 0.66073547 0.75053244]
moved plane far -45.777818283703425 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,11,15,18,21,23
> view #!1.6.7,11,15-16,18,21,23 @ zoom 0.75
moved plane near -46.262909785744135 [0.01138538 0.66073547 0.75053244]
moved plane far -46.262909785744135 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,11,15-16,18,21,23
> view #!1.6.7,11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -46.262909785744135 [0.01138538 0.66073547 0.75053244]
moved plane far -46.262909785744135 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,11,15-16,18-19,21,23
> view #!1.6.7,9,11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -47.77006474288813 [0.01138538 0.66073547 0.75053244]
moved plane far -47.77006474288813 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,9,11,15-16,18-19,21,23
> view #!1.6.7,9-11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -50.60582104042182 [0.01138538 0.66073547 0.75053244]
moved plane far -50.60582104042182 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,9-11,15-16,18-19,21,23
> view #!1.6.4,7,9-11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -51.46649732054045 [0.01138538 0.66073547 0.75053244]
moved plane far -51.46649732054045 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.4,7,9-11,15-16,18-19,21,23
> view #!1.6.4,7,9-11,15-16,18-21,23 @ zoom 0.75
moved plane near -51.60324295236878 [0.01138538 0.66073547 0.75053244]
moved plane far -51.60324295236878 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.4,7,9-11,15-16,18-21,23
> view #!1.6.4,7-11,15-16,18-21,23 @ zoom 0.75
moved plane near -51.63080631437722 [0.01138538 0.66073547 0.75053244]
moved plane far -51.63080631437722 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.4,7-11,15-16,18-21,23
> view #!1.6.4,7-11,15-16,18-21,23 @ zoom 0.75
moved plane near -51.63080631437722 [0.01138538 0.66073547 0.75053244]
moved plane far -51.63080631437722 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.4,7-11,15-16,18-21,23
> view #!1.6.4,7-11,15-16,18-21,23 @ zoom 0.75
moved plane near -51.63080631437722 [0.01138538 0.66073547 0.75053244]
moved plane far -51.63080631437722 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.4,7-11,15-16,18-21,23
> view #!1.6.18 @ zoom 0.75
moved plane near -15.23842717670122 [0.01138538 0.66073547 0.75053244]
moved plane far -15.23842717670122 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.18,21,23 @ zoom 0.75
moved plane near -32.109720471015144 [0.01138538 0.66073547 0.75053244]
moved plane far -32.109720471015144 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21,23
> view #!1.6.7,18,21,23 @ zoom 0.75
moved plane near -43.73475591090263 [0.01138538 0.66073547 0.75053244]
moved plane far -43.73475591090263 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,18,21,23
> view #!1.6.7,11,18,21,23 @ zoom 0.75
moved plane near -44.65860365868135 [0.01138538 0.66073547 0.75053244]
moved plane far -44.65860365868135 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,11,18,21,23
> view #!1.6.7,11,15,18,21,23 @ zoom 0.75
moved plane near -45.777818283703425 [0.01138538 0.66073547 0.75053244]
moved plane far -45.777818283703425 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,11,15,18,21,23
> view #!1.6.7,11,15-16,18,21,23 @ zoom 0.75
moved plane near -46.262909785744135 [0.01138538 0.66073547 0.75053244]
moved plane far -46.262909785744135 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,11,15-16,18,21,23
> view #!1.6.7,11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -46.262909785744135 [0.01138538 0.66073547 0.75053244]
moved plane far -46.262909785744135 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,11,15-16,18-19,21,23
> view #!1.6.7,9,11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -47.77006474288813 [0.01138538 0.66073547 0.75053244]
moved plane far -47.77006474288813 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,9,11,15-16,18-19,21,23
> view #!1.6.7,9-11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -50.60582104042182 [0.01138538 0.66073547 0.75053244]
moved plane far -50.60582104042182 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,9-11,15-16,18-19,21,23
> view #!1.6.4,7,9-11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -51.46649732054045 [0.01138538 0.66073547 0.75053244]
moved plane far -51.46649732054045 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.4,7,9-11,15-16,18-19,21,23
> view #!1.6.4,7,9-11,15-16,18-21,23 @ zoom 0.75
moved plane near -51.60324295236878 [0.01138538 0.66073547 0.75053244]
moved plane far -51.60324295236878 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.4,7,9-11,15-16,18-21,23
> view #!1.6.4,7-11,15-16,18-21,23 @ zoom 0.75
moved plane near -51.63080631437722 [0.01138538 0.66073547 0.75053244]
moved plane far -51.63080631437722 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.4,7-11,15-16,18-21,23
> view #!1.6.4,7-11,15-16,18-21,23 @ zoom 0.75
moved plane near -51.63080631437722 [0.01138538 0.66073547 0.75053244]
moved plane far -51.63080631437722 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.4,7-11,15-16,18-21,23
> view #!1.6.18 @ zoom 0.75
moved plane near -15.23842717670122 [0.01138538 0.66073547 0.75053244]
moved plane far -15.23842717670122 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.18,21,23 @ zoom 0.75
moved plane near -32.109720471015144 [0.01138538 0.66073547 0.75053244]
moved plane far -32.109720471015144 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21,23
> view #!1.6.7,18,21,23 @ zoom 0.75
moved plane near -43.73475591090263 [0.01138538 0.66073547 0.75053244]
moved plane far -43.73475591090263 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,18,21,23
> view #!1.6.7,11,18,21,23 @ zoom 0.75
moved plane near -44.65860365868135 [0.01138538 0.66073547 0.75053244]
moved plane far -44.65860365868135 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,11,18,21,23
> view #!1.6.7,11,15,18,21,23 @ zoom 0.75
moved plane near -45.777818283703425 [0.01138538 0.66073547 0.75053244]
moved plane far -45.777818283703425 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,11,15,18,21,23
> view #!1.6.7,11,15-16,18,21,23 @ zoom 0.75
moved plane near -46.262909785744135 [0.01138538 0.66073547 0.75053244]
moved plane far -46.262909785744135 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,11,15-16,18,21,23
> view #!1.6.7,11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -46.262909785744135 [0.01138538 0.66073547 0.75053244]
moved plane far -46.262909785744135 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,11,15-16,18-19,21,23
> view #!1.6.7,9,11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -47.77006474288813 [0.01138538 0.66073547 0.75053244]
moved plane far -47.77006474288813 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,9,11,15-16,18-19,21,23
> view #!1.6.7,9-11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -50.60582104042182 [0.01138538 0.66073547 0.75053244]
moved plane far -50.60582104042182 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,9-11,15-16,18-19,21,23
> view #!1.6.4,7,9-11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -51.46649732054045 [0.01138538 0.66073547 0.75053244]
moved plane far -51.46649732054045 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.4,7,9-11,15-16,18-19,21,23
> view #!1.6.4,7,9-11,15-16,18-21,23 @ zoom 0.75
moved plane near -51.60324295236878 [0.01138538 0.66073547 0.75053244]
moved plane far -51.60324295236878 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.4,7,9-11,15-16,18-21,23
> view #!1.6.4,7-11,15-16,18-21,23 @ zoom 0.75
moved plane near -51.63080631437722 [0.01138538 0.66073547 0.75053244]
moved plane far -51.63080631437722 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.4,7-11,15-16,18-21,23
> view #!1.6.7-11,15-16,18-21,23 @ zoom 0.75
moved plane near -50.775577752334925 [0.01138538 0.66073547 0.75053244]
moved plane far -50.775577752334925 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7-11,15-16,18-21,23
> view #!1.6.18 @ zoom 0.75
moved plane near -15.23842717670122 [0.01138538 0.66073547 0.75053244]
moved plane far -15.23842717670122 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.18,21,23 @ zoom 0.75
moved plane near -32.109720471015144 [0.01138538 0.66073547 0.75053244]
moved plane far -32.109720471015144 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21,23
> view #!1.6.7,18,21,23 @ zoom 0.75
moved plane near -43.73475591090263 [0.01138538 0.66073547 0.75053244]
moved plane far -43.73475591090263 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,18,21,23
> view #!1.6.7,11,18,21,23 @ zoom 0.75
moved plane near -44.65860365868135 [0.01138538 0.66073547 0.75053244]
moved plane far -44.65860365868135 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,11,18,21,23
> view #!1.6.7,11,15,18,21,23 @ zoom 0.75
moved plane near -45.777818283703425 [0.01138538 0.66073547 0.75053244]
moved plane far -45.777818283703425 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,11,15,18,21,23
> view #!1.6.7,11,15-16,18,21,23 @ zoom 0.75
moved plane near -46.262909785744135 [0.01138538 0.66073547 0.75053244]
moved plane far -46.262909785744135 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,11,15-16,18,21,23
> view #!1.6.7,11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -46.262909785744135 [0.01138538 0.66073547 0.75053244]
moved plane far -46.262909785744135 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,11,15-16,18-19,21,23
> view #!1.6.7,9,11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -47.77006474288813 [0.01138538 0.66073547 0.75053244]
moved plane far -47.77006474288813 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,9,11,15-16,18-19,21,23
> view #!1.6.7,9-11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -50.60582104042182 [0.01138538 0.66073547 0.75053244]
moved plane far -50.60582104042182 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,9-11,15-16,18-19,21,23
> view #!1.6.7,9-11,15-16,18-21,23 @ zoom 0.75
moved plane near -50.74256667225014 [0.01138538 0.66073547 0.75053244]
moved plane far -50.74256667225014 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,9-11,15-16,18-21,23
> view #!1.6.7-11,15-16,18-21,23 @ zoom 0.75
moved plane near -50.775577752334925 [0.01138538 0.66073547 0.75053244]
moved plane far -50.775577752334925 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7-11,15-16,18-21,23
> view #!1.6.7-11,15-16,18-21,23 @ zoom 0.75
moved plane near -50.775577752334925 [0.01138538 0.66073547 0.75053244]
moved plane far -50.775577752334925 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7-11,15-16,18-21,23
> view #!1.6.7,9-11,15-16,18-21,23 @ zoom 0.75
moved plane near -50.74256667225014 [0.01138538 0.66073547 0.75053244]
moved plane far -50.74256667225014 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,9-11,15-16,18-21,23
> view #!1.6.18 @ zoom 0.75
moved plane near -15.23842717670122 [0.01138538 0.66073547 0.75053244]
moved plane far -15.23842717670122 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.18,21,23 @ zoom 0.75
moved plane near -32.109720471015144 [0.01138538 0.66073547 0.75053244]
moved plane far -32.109720471015144 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21,23
> view #!1.6.7,18,21,23 @ zoom 0.75
moved plane near -43.73475591090263 [0.01138538 0.66073547 0.75053244]
moved plane far -43.73475591090263 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,18,21,23
> view #!1.6.7,11,18,21,23 @ zoom 0.75
moved plane near -44.65860365868135 [0.01138538 0.66073547 0.75053244]
moved plane far -44.65860365868135 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,11,18,21,23
> view #!1.6.7,11,15,18,21,23 @ zoom 0.75
moved plane near -45.777818283703425 [0.01138538 0.66073547 0.75053244]
moved plane far -45.777818283703425 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,11,15,18,21,23
> view #!1.6.7,11,15-16,18,21,23 @ zoom 0.75
moved plane near -46.262909785744135 [0.01138538 0.66073547 0.75053244]
moved plane far -46.262909785744135 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,11,15-16,18,21,23
> view #!1.6.7,11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -46.262909785744135 [0.01138538 0.66073547 0.75053244]
moved plane far -46.262909785744135 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,11,15-16,18-19,21,23
> view #!1.6.7,10-11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -48.917085021259915 [0.01138538 0.66073547 0.75053244]
moved plane far -48.917085021259915 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,10-11,15-16,18-19,21,23
> view #!1.6.7,10-11,15-16,18-21,23 @ zoom 0.75
moved plane near -49.053830653088255 [0.01138538 0.66073547 0.75053244]
moved plane far -49.053830653088255 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,10-11,15-16,18-21,23
> view #!1.6.7,9-11,15-16,18-21,23 @ zoom 0.75
moved plane near -50.74256667225014 [0.01138538 0.66073547 0.75053244]
moved plane far -50.74256667225014 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,9-11,15-16,18-21,23
> view #!1.6.7,9-11,15-16,18-21,23 @ zoom 0.75
moved plane near -50.74256667225014 [0.01138538 0.66073547 0.75053244]
moved plane far -50.74256667225014 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.7,9-11,15-16,18-21,23
> view #!1.6.9-11,15-16,18-21,23 @ zoom 0.75
moved plane near -49.46421814462337 [0.01138538 0.66073547 0.75053244]
moved plane far -49.46421814462337 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.9-11,15-16,18-21,23
> view #!1.6.18 @ zoom 0.75
moved plane near -15.23842717670122 [0.01138538 0.66073547 0.75053244]
moved plane far -15.23842717670122 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.18,21,23 @ zoom 0.75
moved plane near -32.109720471015144 [0.01138538 0.66073547 0.75053244]
moved plane far -32.109720471015144 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21,23
> view #!1.6.11,18,21,23 @ zoom 0.75
moved plane near -41.52087026702384 [0.01138538 0.66073547 0.75053244]
moved plane far -41.52087026702384 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.11,18,21,23
> view #!1.6.11,16,18,21,23 @ zoom 0.75
moved plane near -43.65082738860469 [0.01138538 0.66073547 0.75053244]
moved plane far -43.65082738860469 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.11,16,18,21,23
> view #!1.6.11,15-16,18,21,23 @ zoom 0.75
moved plane near -44.769559468431986 [0.01138538 0.66073547 0.75053244]
moved plane far -44.769559468431986 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.11,15-16,18,21,23
> view #!1.6.11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -44.769559468431986 [0.01138538 0.66073547 0.75053244]
moved plane far -44.769559468431986 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.11,15-16,18-19,21,23
> view #!1.6.10-11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -47.63795678292771 [0.01138538 0.66073547 0.75053244]
moved plane far -47.63795678292771 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.10-11,15-16,18-19,21,23
> view #!1.6.10-11,15-16,18-21,23 @ zoom 0.75
moved plane near -47.77470241475604 [0.01138538 0.66073547 0.75053244]
moved plane far -47.77470241475604 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.10-11,15-16,18-21,23
> view #!1.6.9-11,15-16,18-21,23 @ zoom 0.75
moved plane near -49.46421814462337 [0.01138538 0.66073547 0.75053244]
moved plane far -49.46421814462337 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.9-11,15-16,18-21,23
> view #!1.6.9-11,15-16,18-21,23 @ zoom 0.75
moved plane near -49.46421814462337 [0.01138538 0.66073547 0.75053244]
moved plane far -49.46421814462337 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.9-11,15-16,18-21,23
> view #!1.6.10-11,15-16,18-21,23 @ zoom 0.75
moved plane near -47.77470241475604 [0.01138538 0.66073547 0.75053244]
moved plane far -47.77470241475604 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.10-11,15-16,18-21,23
> view #!1.6.18 @ zoom 0.75
moved plane near -15.23842717670122 [0.01138538 0.66073547 0.75053244]
moved plane far -15.23842717670122 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.18,21,23 @ zoom 0.75
moved plane near -32.109720471015144 [0.01138538 0.66073547 0.75053244]
moved plane far -32.109720471015144 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21,23
> view #!1.6.11,18,21,23 @ zoom 0.75
moved plane near -41.52087026702384 [0.01138538 0.66073547 0.75053244]
moved plane far -41.52087026702384 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.11,18,21,23
> view #!1.6.11,15,18,21,23 @ zoom 0.75
moved plane near -42.64211882376458 [0.01138538 0.66073547 0.75053244]
moved plane far -42.64211882376458 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.11,15,18,21,23
> view #!1.6.11,15-16,18,21,23 @ zoom 0.75
moved plane near -44.769559468431986 [0.01138538 0.66073547 0.75053244]
moved plane far -44.769559468431986 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.11,15-16,18,21,23
> view #!1.6.11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -44.769559468431986 [0.01138538 0.66073547 0.75053244]
moved plane far -44.769559468431986 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.11,15-16,18-19,21,23
> view #!1.6.10-11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -47.63795678292771 [0.01138538 0.66073547 0.75053244]
moved plane far -47.63795678292771 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.10-11,15-16,18-19,21,23
> view #!1.6.10-11,15-16,18-21,23 @ zoom 0.75
moved plane near -47.77470241475604 [0.01138538 0.66073547 0.75053244]
moved plane far -47.77470241475604 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.10-11,15-16,18-21,23
> view #!1.6.10-11,15-16,18-21,23 @ zoom 0.75
moved plane near -47.77470241475604 [0.01138538 0.66073547 0.75053244]
moved plane far -47.77470241475604 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.10-11,15-16,18-21,23
> view #!1.6.11,15-16,18-21,23 @ zoom 0.75
moved plane near -44.91296984907118 [0.01138538 0.66073547 0.75053244]
moved plane far -44.91296984907118 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.11,15-16,18-21,23
> view #!1.6.18 @ zoom 0.75
moved plane near -15.23842717670122 [0.01138538 0.66073547 0.75053244]
moved plane far -15.23842717670122 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.18,21,23 @ zoom 0.75
moved plane near -32.109720471015144 [0.01138538 0.66073547 0.75053244]
moved plane far -32.109720471015144 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21,23
> view #!1.6.11,18,21,23 @ zoom 0.75
moved plane near -41.52087026702384 [0.01138538 0.66073547 0.75053244]
moved plane far -41.52087026702384 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.11,18,21,23
> view #!1.6.11,18-19,21,23 @ zoom 0.75
moved plane near -42.5165914330096 [0.01138538 0.66073547 0.75053244]
moved plane far -42.5165914330096 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.11,18-19,21,23
> view #!1.6.11,15,18-19,21,23 @ zoom 0.75
moved plane near -42.64211882376458 [0.01138538 0.66073547 0.75053244]
moved plane far -42.64211882376458 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.11,15,18-19,21,23
> view #!1.6.11,15-16,18-19,21,23 @ zoom 0.75
moved plane near -44.769559468431986 [0.01138538 0.66073547 0.75053244]
moved plane far -44.769559468431986 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.11,15-16,18-19,21,23
> view #!1.6.11,15-16,18-21,23 @ zoom 0.75
moved plane near -44.91296984907118 [0.01138538 0.66073547 0.75053244]
moved plane far -44.91296984907118 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.11,15-16,18-21,23
> view #!1.6.11,15-16,18-21,23 @ zoom 0.75
moved plane near -44.91296984907118 [0.01138538 0.66073547 0.75053244]
moved plane far -44.91296984907118 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.11,15-16,18-21,23
> view #!1.6.15-16,18-21,23 @ zoom 0.75
moved plane near -40.39233874385921 [0.01138538 0.66073547 0.75053244]
moved plane far -40.39233874385921 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.15-16,18-21,23
> view #!1.6.18 @ zoom 0.75
moved plane near -15.23842717670122 [0.01138538 0.66073547 0.75053244]
moved plane far -15.23842717670122 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.18,21,23 @ zoom 0.75
moved plane near -32.109720471015144 [0.01138538 0.66073547 0.75053244]
moved plane far -32.109720471015144 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21,23
> view #!1.6.18-19,21,23 @ zoom 0.75
moved plane near -36.22881607435244 [0.01138538 0.66073547 0.75053244]
moved plane far -36.22881607435244 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18-19,21,23
> view #!1.6.15,18-19,21,23 @ zoom 0.75
moved plane near -38.24476840677962 [0.01138538 0.66073547 0.75053244]
moved plane far -38.24476840677962 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.15,18-19,21,23
> view #!1.6.15-16,18-19,21,23 @ zoom 0.75
moved plane near -40.328858049655764 [0.01138538 0.66073547 0.75053244]
moved plane far -40.328858049655764 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.15-16,18-19,21,23
> view #!1.6.15-16,18-21,23 @ zoom 0.75
moved plane near -40.39233874385921 [0.01138538 0.66073547 0.75053244]
moved plane far -40.39233874385921 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.15-16,18-21,23
> view #!1.6.15-16,18-21,23 @ zoom 0.75
moved plane near -40.39233874385921 [0.01138538 0.66073547 0.75053244]
moved plane far -40.39233874385921 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.15-16,18-21,23
> view #!1.6.15-16,18-21,23 @ zoom 0.75
moved plane near -40.39233874385921 [0.01138538 0.66073547 0.75053244]
moved plane far -40.39233874385921 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.15-16,18-21,23
> view #!1.6.18 @ zoom 0.75
moved plane near -15.23842717670122 [0.01138538 0.66073547 0.75053244]
moved plane far -15.23842717670122 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.18,21,23 @ zoom 0.75
moved plane near -32.109720471015144 [0.01138538 0.66073547 0.75053244]
moved plane far -32.109720471015144 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21,23
> view #!1.6.18-19,21,23 @ zoom 0.75
moved plane near -36.22881607435244 [0.01138538 0.66073547 0.75053244]
moved plane far -36.22881607435244 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18-19,21,23
> view #!1.6.15,18-19,21,23 @ zoom 0.75
moved plane near -38.24476840677962 [0.01138538 0.66073547 0.75053244]
moved plane far -38.24476840677962 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.15,18-19,21,23
> view #!1.6.15-16,18-19,21,23 @ zoom 0.75
moved plane near -40.328858049655764 [0.01138538 0.66073547 0.75053244]
moved plane far -40.328858049655764 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.15-16,18-19,21,23
> view #!1.6.15-16,18-21,23 @ zoom 0.75
moved plane near -40.39233874385921 [0.01138538 0.66073547 0.75053244]
moved plane far -40.39233874385921 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.15-16,18-21,23
> view #!1.6.15-16,18-21,23 @ zoom 0.75
moved plane near -40.39233874385921 [0.01138538 0.66073547 0.75053244]
moved plane far -40.39233874385921 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.15-16,18-21,23
> view #!1.6.18 @ zoom 0.75
moved plane near -15.23842717670122 [0.01138538 0.66073547 0.75053244]
moved plane far -15.23842717670122 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.18,21,23 @ zoom 0.75
moved plane near -32.109720471015144 [0.01138538 0.66073547 0.75053244]
moved plane far -32.109720471015144 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21,23
> view #!1.6.18-19,21,23 @ zoom 0.75
moved plane near -36.22881607435244 [0.01138538 0.66073547 0.75053244]
moved plane far -36.22881607435244 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18-19,21,23
> view #!1.6.15,18-19,21,23 @ zoom 0.75
moved plane near -38.24476840677962 [0.01138538 0.66073547 0.75053244]
moved plane far -38.24476840677962 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.15,18-19,21,23
> view #!1.6.15-16,18-19,21,23 @ zoom 0.75
moved plane near -40.328858049655764 [0.01138538 0.66073547 0.75053244]
moved plane far -40.328858049655764 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.15-16,18-19,21,23
> view #!1.6.15-16,18-21,23 @ zoom 0.75
moved plane near -40.39233874385921 [0.01138538 0.66073547 0.75053244]
moved plane far -40.39233874385921 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.15-16,18-21,23
> view #!1.6.16,18-21,23 @ zoom 0.75
moved plane near -38.73400114992754 [0.01138538 0.66073547 0.75053244]
moved plane far -38.73400114992754 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.16,18-21,23
> view #!1.6.18 @ zoom 0.75
moved plane near -15.23842717670122 [0.01138538 0.66073547 0.75053244]
moved plane far -15.23842717670122 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.18,21,23 @ zoom 0.75
moved plane near -32.109720471015144 [0.01138538 0.66073547 0.75053244]
moved plane far -32.109720471015144 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21,23
> view #!1.6.18-19,21,23 @ zoom 0.75
moved plane near -36.22881607435244 [0.01138538 0.66073547 0.75053244]
moved plane far -36.22881607435244 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18-19,21,23
> view #!1.6.16,18-19,21,23 @ zoom 0.75
moved plane near -38.519136804375535 [0.01138538 0.66073547 0.75053244]
moved plane far -38.519136804375535 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.16,18-19,21,23
> view #!1.6.16,18-21,23 @ zoom 0.75
moved plane near -38.73400114992754 [0.01138538 0.66073547 0.75053244]
moved plane far -38.73400114992754 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.16,18-21,23
> view #!1.6.16,18-21,23 @ zoom 0.75
moved plane near -38.73400114992754 [0.01138538 0.66073547 0.75053244]
moved plane far -38.73400114992754 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.16,18-21,23
> view #!1.6.16,18-21,23 @ zoom 0.75
moved plane near -38.73400114992754 [0.01138538 0.66073547 0.75053244]
moved plane far -38.73400114992754 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.16,18-21,23
> view #!1.6.18 @ zoom 0.75
moved plane near -15.23842717670122 [0.01138538 0.66073547 0.75053244]
moved plane far -15.23842717670122 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.18,21,23 @ zoom 0.75
moved plane near -32.109720471015144 [0.01138538 0.66073547 0.75053244]
moved plane far -32.109720471015144 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21,23
> view #!1.6.18-19,21,23 @ zoom 0.75
moved plane near -36.22881607435244 [0.01138538 0.66073547 0.75053244]
moved plane far -36.22881607435244 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18-19,21,23
> view #!1.6.16,18-19,21,23 @ zoom 0.75
moved plane near -38.519136804375535 [0.01138538 0.66073547 0.75053244]
moved plane far -38.519136804375535 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.16,18-19,21,23
> view #!1.6.16,18-21,23 @ zoom 0.75
moved plane near -38.73400114992754 [0.01138538 0.66073547 0.75053244]
moved plane far -38.73400114992754 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.16,18-21,23
> view #!1.6.18-21,23 @ zoom 0.75
moved plane near -36.62758771407753 [0.01138538 0.66073547 0.75053244]
moved plane far -36.62758771407753 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18-21,23
> view #!1.6.18 @ zoom 0.75
moved plane near -15.23842717670122 [0.01138538 0.66073547 0.75053244]
moved plane far -15.23842717670122 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.18,21,23 @ zoom 0.75
moved plane near -32.109720471015144 [0.01138538 0.66073547 0.75053244]
moved plane far -32.109720471015144 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21,23
> view #!1.6.18-19,21,23 @ zoom 0.75
moved plane near -36.22881607435244 [0.01138538 0.66073547 0.75053244]
moved plane far -36.22881607435244 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18-19,21,23
> view #!1.6.18-21,23 @ zoom 0.75
moved plane near -36.62758771407753 [0.01138538 0.66073547 0.75053244]
moved plane far -36.62758771407753 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18-21,23
> view #!1.6.18-21,23 @ zoom 0.75
moved plane near -36.62758771407753 [0.01138538 0.66073547 0.75053244]
moved plane far -36.62758771407753 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18-21,23
> view #!1.6.18-19,21,23 @ zoom 0.75
moved plane near -36.22881607435244 [0.01138538 0.66073547 0.75053244]
moved plane far -36.22881607435244 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18-19,21,23
> view #!1.6.18 @ zoom 0.75
moved plane near -15.23842717670122 [0.01138538 0.66073547 0.75053244]
moved plane far -15.23842717670122 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18
> view #!1.6.18,21 @ zoom 0.75
moved plane near -31.356400810118355 [0.01138538 0.66073547 0.75053244]
moved plane far -31.356400810118355 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21
> view #!1.6.18-19,21 @ zoom 0.75
moved plane near -35.659410642005206 [0.01138538 0.66073547 0.75053244]
moved plane far -35.659410642005206 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18-19,21
> view #!1.6.18-19,21,23 @ zoom 0.75
moved plane near -36.22881607435244 [0.01138538 0.66073547 0.75053244]
moved plane far -36.22881607435244 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18-19,21,23
> view #!1.6.18-19,21,23 @ zoom 0.75
moved plane near -36.22881607435244 [0.01138538 0.66073547 0.75053244]
moved plane far -36.22881607435244 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18-19,21,23
> view #!1.6.18,21,23 @ zoom 0.75
moved plane near -32.109720471015144 [0.01138538 0.66073547 0.75053244]
moved plane far -32.109720471015144 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21,23
> view #!1.6.18 @ zoom 0.75
moved plane near -15.23842717670122 [0.01138538 0.66073547 0.75053244]
moved plane far -15.23842717670122 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18
> view #!1.6.18,21 @ zoom 0.75
moved plane near -31.356400810118355 [0.01138538 0.66073547 0.75053244]
moved plane far -31.356400810118355 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21
> view #!1.6.18,21,23 @ zoom 0.75
moved plane near -32.109720471015144 [0.01138538 0.66073547 0.75053244]
moved plane far -32.109720471015144 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21,23
> view #!1.6.18,21,23 @ zoom 0.75
moved plane near -32.109720471015144 [0.01138538 0.66073547 0.75053244]
moved plane far -32.109720471015144 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,21,23
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.18 @ zoom 0.75
moved plane near -15.23842717670122 [0.01138538 0.66073547 0.75053244]
moved plane far -15.23842717670122 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.18 @ zoom 0.75
moved plane near -15.23842717670122 [0.01138538 0.66073547 0.75053244]
moved plane far -15.23842717670122 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18
> view #!1.6.18,23 @ zoom 0.75
moved plane near -24.484919216568446 [0.01138538 0.66073547 0.75053244]
moved plane far -24.484919216568446 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.18,23
> view #!1.6.23 @ zoom 0.75
moved plane near -13.431920754651609 [0.01138538 0.66073547 0.75053244]
moved plane far -13.431920754651609 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.23
> view #!1.6.23 @ zoom 0.75
moved plane near -13.431920754651609 [0.01138538 0.66073547 0.75053244]
moved plane far -13.431920754651609 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.23
> view #!1.6.23 @ zoom 0.75
moved plane near -13.431920754651609 [0.01138538 0.66073547 0.75053244]
moved plane far -13.431920754651609 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.23
> view #!1.6.23 @ zoom 0.75
moved plane near -13.431920754651609 [0.01138538 0.66073547 0.75053244]
moved plane far -13.431920754651609 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.23
> view #!1.6.23 @ zoom 0.75
moved plane near -13.431920754651609 [0.01138538 0.66073547 0.75053244]
moved plane far -13.431920754651609 [0.01138538 0.66073547 0.75053244]
> ~surface #1.6
> surface #!1.6.23
> view #!1.3.14 @ zoom 0.75
moved plane near -35.44283129095797 [0.01138538 0.66073547 0.75053244]
moved plane far -35.44283129095797 [0.01138538 0.66073547 0.75053244]
> ~surface #1.3
> surface #!1.3.14
> view #!1.3.14 @ zoom 0.75
moved plane near -35.44283129095797 [0.01138538 0.66073547 0.75053244]
moved plane far -35.44283129095797 [0.01138538 0.66073547 0.75053244]
> ~surface #1.3
> surface #!1.3.14
> view #!1.3.14 @ zoom 0.75
moved plane near -35.44283129095797 [0.01138538 0.66073547 0.75053244]
moved plane far -35.44283129095797 [0.01138538 0.66073547 0.75053244]
> ~surface #1.3
> surface #!1.3.14
> view #!1.3.14 @ zoom 0.75
moved plane near -35.44283129095797 [0.01138538 0.66073547 0.75053244]
moved plane far -35.44283129095797 [0.01138538 0.66073547 0.75053244]
> ~surface #1.3
> surface #!1.3.14
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/edited/cavity all.cxs"
Opened 275y+21h density as #6, grid size 140,140,140, pixel 1.32, shown at
level 0.0709, step 1, values float32
Populating font family aliases took 108 ms. Replace uses of missing font
family "Times" with one that exists to avoid this cost.
Log from Thu Mar 20 17:02:46 2025UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/edited/All 21h and
> Oseltamivir reference (wt).cxs"
Opened 275y+21h density as #6, grid size 140,140,140, pixel 1.32, shown at
level 0.0709, step 1, values float32
Log from Thu Mar 20 16:03:03 2025UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/edited/All 21h and
> Oseltamivir reference (wt).cxs"
Opened 275y+21h density as #6, grid size 140,140,140, pixel 1.32, shown at
level 0.0709, step 1, values float32
Log from Thu Mar 20 14:14:14 2025UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/edited/All 21h and
> Oseltamivir reference (wt).cxs"
Opened 275y+21h density as #6, grid size 140,140,140, pixel 1.32, shown at
level 0.0709, step 1, values float32
Log from Thu Mar 20 11:56:54 2025UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/edited/1 wt+21h vs
> h275y+21h .cxs"
Opened 275y+21h density as #6, grid size 140,140,140, pixel 1.32, shown at
level 0.0709, step 1, values float32
Log from Tue Mar 18 15:54:31 2025UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/25.3.16-5 275+21h vs
> wt+21h.cxs"
Error opening map "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/25.3.16-5
275+21h vs wt+21h.cxs": File 25.3.16-5 275+21h vs wt+21h.cxs, format mrc
MRC header value nsymbt (875113504) is invalid
restore_snapshot for "Volume" returned None
restore_snapshot for "VolumeSurface" returned None
Opened 275y+21h density as #6, grid size 140,140,140, pixel 1.32, shown at
level 0.0709, step 1, values float32
Log from Sun Mar 16 18:21:34 2025UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "C:/Users/hp/坚果云/科研/研二/TEXAS/建模/25.3.16 画图/25.3.16 -3 wt21h vs
> 2hu4.cxs"
Opened 25.3.14 wt_21h.mrc 21h density as #5, grid size 140,140,140, pixel
1.32, shown at level 0.0894, step 1, values float32
Opened 25.3.14 wt_21h.mrc as #3, grid size 140,140,140, pixel 1.32, shown at
level 0.0922, step 1, values float32
Opened 25.3.14 wt_21h.mrc copy as #7, grid size 140,140,140, pixel 1.32, shown
at step 1, values float32
Log from Sun Mar 16 15:13:15 2025UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15 21h-wt.cxs"
Opened 25.3.14 wt_21h.mrc copy as #5, grid size 140,140,140, pixel 1.32, shown
at level 0.0894, step 1, values float32
Log from Sat Mar 15 15:10:40 2025UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "C:\Users\hp\Desktop\temporary file\25.3.14 refine\25.3.15 21h-wt all
> view.cxs" format session
Log from Sat Mar 15 13:19:14 2025 Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 wt 21h.pdb"
Chain information for 25.3.14 wt 21h.pdb #1
---
Chain | Description
D | No description available
3 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 275Y
> 21h.pdb"
Chain information for 25.3.14 275Y 21h.pdb #2
---
Chain | Description
D | No description available
3 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 275APO.pdb"
Chain information for 25.3.14 275APO.pdb #3
---
Chain | Description
D | No description available
3 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Computing secondary structure
> set bgColor white
> set bgColor #ffffff00
> ui tool show "Command Line Interface"
> lighting full
> lighting soft
> lighting full
> lighting simple
> lighting shadows true
> lighting full
> lighting flat
> graphics silhouettes false
> graphics silhouettes true
> set bgColor gray
> set bgColor #80808000
> set bgColor white
> set bgColor #ffffff00
> view orient
[Repeated 1 time(s)]
> lighting soft
> lighting full
> lighting soft
> lighting flat
> lighting full
> lighting soft
> lighting simple
> lighting soft
> align #1 toAtoms #2
Unequal number of atoms to pair, 3061 and 3063
> matchmaker #2 to #1
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 25.3.14 wt 21h.pdb, chain D (#1) with 25.3.14 275Y 21h.pdb, chain D
(#2), sequence alignment score = 1999.1
RMSD between 387 pruned atom pairs is 0.324 angstroms; (across all 387 pairs:
0.324)
> matchmaker #3 to #1
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 25.3.14 wt 21h.pdb, chain D (#1) with 25.3.14 275APO.pdb, chain D
(#3), sequence alignment score = 1991.6
RMSD between 387 pruned atom pairs is 0.364 angstroms; (across all 387 pairs:
0.364)
> hide #1 models
> hide #2 models
> hide #3 models
> show #3 models
> hide #3 models
> show #1 models
> show #2 models
> show #3 models
> hide #1 models
> hide #3 models
> show #1 models
> close
> close #
Expected a models specifier or a keyword
> open "C:/Users/hp/Desktop/temporary file/25.2.9 274apo/25.2.9
> H5N1-APO-274-TERA.pdb"
Chain information for 25.2.9 H5N1-APO-274-TERA.pdb #1
---
Chain | Description
A B C D | No description available
12 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 wt_21h.mrc"
Opened 25.3.14 wt_21h.mrc as #2, grid size 140,140,140, pixel 1.32, shown at
level 0.15, step 1, values float32
> select add #2
2 models selected
> ui mousemode right "translate selected models"
> view matrix models #2,1,0,0,-0.71014,0,1,0,-1.0647,0,0,1,24.039
> select subtract #2
Nothing selected
> select add #1
12252 atoms, 12632 bonds, 1572 residues, 1 model selected
> view matrix models #1,1,0,0,6.8891,0,1,0,-3.0198,0,0,1,-45.744
> view matrix models #1,1,0,0,2.7469,0,1,0,4.2044,0,0,1,-0.8542
> view matrix models #1,1,0,0,-1.6281,0,1,0,-2.0361,0,0,1,-1.3732
> view matrix models
> #1,0.98817,-0.15334,0.0018364,13.34,0.15333,0.98816,0.0047055,-15.687,-0.0025362,-0.0043683,0.99999,-0.73564
> view matrix models
> #1,0.98817,-0.15334,0.0018364,14.526,0.15333,0.98816,0.0047055,-16.837,-0.0025362,-0.0043683,0.99999,-0.68414
> view matrix models
> #1,0.98979,-0.12595,-0.066777,19.257,0.12603,0.99202,-0.0030002,-13.839,0.066622,-0.0054467,0.99776,-6.7346
> view matrix models
> #1,0.97219,-0.22503,-0.064857,29.824,0.22508,0.97432,-0.0066573,-20.961,0.06469,-0.0081258,0.99787,-6.3204
> fitmap #1 inMap #2
Fit molecule 25.2.9 H5N1-APO-274-TERA.pdb (#1) to map 25.3.14 wt_21h.mrc (#2)
using 12252 atoms
average map value = 0.2203, steps = 72
shifted from previous position = 2.23
rotated from previous position = 4.31 degrees
atoms outside contour = 3838, contour level = 0.15019
Position of 25.2.9 H5N1-APO-274-TERA.pdb (#1) relative to 25.3.14 wt_21h.mrc
(#2) coordinates:
Matrix rotation and translation
0.96521608 -0.26145349 -0.00000313 27.36331187
0.26145349 0.96521608 -0.00001537 -20.92404374
0.00000704 0.00001401 1.00000000 -25.10689376
Axis 0.00005618 -0.00001945 1.00000000
Axis point 92.32202072 92.38125036 0.00000000
Rotation angle (degrees) 15.15632453
Shift along axis -25.10494943
> close #2
> close
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 wt_21h.mrc"
Opened 25.3.14 wt_21h.mrc as #1, grid size 140,140,140, pixel 1.32, shown at
level 0.15, step 1, values float32
> open "C:/Users/hp/Desktop/temporary file/25.2.9 274apo/25.2.9
> H5N1-APO-274-TERA.pdb"
Chain information for 25.2.9 H5N1-APO-274-TERA.pdb #2
---
Chain | Description
A B C D | No description available
12 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> select add #2
12252 atoms, 12632 bonds, 1572 residues, 1 model selected
> view matrix models #2,1,0,0,-8.8859,0,1,0,-9.3602,0,0,1,-15.246
> view matrix models
> #2,0.97173,-0.22891,0.0578,8.6224,0.23233,0.97068,-0.061677,-21.46,-0.041986,0.073362,0.99642,-17.755
> view matrix models
> #2,0.97173,-0.22891,0.0578,16.97,0.23233,0.97068,-0.061677,-11.976,-0.041986,0.073362,0.99642,-22.25
> view matrix models
> #2,0.97173,-0.22891,0.0578,16.533,0.23233,0.97068,-0.061677,-12.322,-0.041986,0.073362,0.99642,-26.135
> fitmap #2 inMap #1
Fit molecule 25.2.9 H5N1-APO-274-TERA.pdb (#2) to map 25.3.14 wt_21h.mrc (#1)
using 12252 atoms
average map value = 0.2203, steps = 64
shifted from previous position = 1.78
rotated from previous position = 5.18 degrees
atoms outside contour = 3843, contour level = 0.15019
Position of 25.2.9 H5N1-APO-274-TERA.pdb (#2) relative to 25.3.14 wt_21h.mrc
(#1) coordinates:
Matrix rotation and translation
0.96509004 -0.26191833 -0.00004220 27.42736600
0.26191833 0.96509004 -0.00001683 -20.96803728
0.00004513 0.00000519 1.00000000 -25.10722655
Axis 0.00004204 -0.00016671 0.99999999
Axis point 92.38817006 92.40725382 0.00000000
Rotation angle (degrees) 15.18392000
Shift along axis -25.10257762
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.2.9 tert
> apo274.pdb"
> close
> open "C:/Users/hp/Desktop/temporary file/25.2.9 274apo/25.2.9
> H5N1-APO-274-TERA.pdb"
Chain information for 25.2.9 H5N1-APO-274-TERA.pdb #1
---
Chain | Description
A B C D | No description available
12 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> close
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 tert
> 275apo.pdb"
Chain information for 25.3.14 tert 275apo.pdb #1
---
Chain | Description
A B C D | No description available
12 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> nucleotides atoms
> style nucleic stick
Changed 0 atom styles
> nucleotides fill
> style nucleic stick
Changed 0 atom styles
> nucleotides slab
> style nucleic stick
Changed 0 atom styles
> nucleotides atoms
> style nucleic stick
Changed 0 atom styles
> close
> open C:/Users/hp/Downloads/h52G5oo.pdb
Summary of feedback from opening C:/Users/hp/Downloads/h52G5oo.pdb
---
warnings | End residue of secondary structure not found: SHEET 3 3 1 ILE D 122 UNK D 124 0
Start residue of secondary structure not found: SHEET 4 4 1 UNK D 129 LEU D
139 0
Chain information for h52G5oo.pdb #1
---
Chain | Description
A B C D | No description available
12 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> ui tool show "Color Actions"
> color bychain
> select ::name="21H"
136 atoms, 144 bonds, 4 residues, 1 model selected
> color sel byhetero
> ui tool show "Color Actions"
> color sel red
> color sel byhetero
> color sel yellow
> color sel byhetero
> color sel gold
> color sel crimson
> color sel orange red
> color sel yellow green
> color sel olive
> color sel chartreuse
> color sel spring green
> color sel saddle brown
> color sel maroon
> color sel yellow
> color sel byhetero
> view matrix models #1,1,0,0,-0.10137,0,1,0,0.016025,0,0,1,0.010116
> select clear
> lighting simple
> lighting soft
> hide atoms
> select ::name="21H"
136 atoms, 144 bonds, 4 residues, 1 model selected
> show sel atoms
> select clear
> lighting flat
> lighting full
> lighting simple
> lighting soft
> lighting shadows true intensity 0.5
> lighting soft
> graphics silhouettes false
> graphics silhouettes true
> view
> volume region all imageMode "full region"
No volumes specified
> view orient
> save C:\Users\hp/Desktop\image1.png supersample 3
> show target m
> view clip false
> select /C
3061 atoms, 3145 bonds, 393 residues, 1 model selected
> select ~sel & ##selected
9183 atoms, 9445 bonds, 1179 residues, 1 model selected
> hide target m
[Repeated 1 time(s)]
> close
> open C:\Users\hp\Downloads\h52G5oo.pdb format pdb
Summary of feedback from opening C:\Users\hp\Downloads\h52G5oo.pdb
---
warnings | End residue of secondary structure not found: SHEET 3 3 1 ILE D 122 UNK D 124 0
Start residue of secondary structure not found: SHEET 4 4 1 UNK D 129 LEU D
139 0
Chain information for h52G5oo.pdb #1
---
Chain | Description
A B C D | No description available
12 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> undo
[Repeated 2 time(s)]Undo failed, probably because structures have been
modified.
> hide atoms
> ui tool show "Color Actions"
> color bychain
> select ::name="21H"
136 atoms, 144 bonds, 4 residues, 1 model selected
> color sel yellow
> show sel atoms
> color sel byhetero
> view orient
> lighting soft
> select clear
> save C:\Users\hp/Desktop\image2.png supersample 3
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15 21h-wt all
> view.cxs"
——— End of log from Sat Mar 15 13:19:14 2025 ———
opened ChimeraX session
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 wt 21h.pdb"
Chain information for 25.3.14 wt 21h.pdb #2
---
Chain | Description
D | No description available
3 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> select #2/D
3061 atoms, 3155 bonds, 393 residues, 1 model selected
> color sel forest green
> ui tool show "Color Actions"
> color sel chartreuse
> color sel green
> color sel lime
> color sel spring green
> color sel lime green
> color sel medium sea green
> color sel sea green
> color sel olive drab
> color sel dark turquoise
> color sel medium spring green
> color sel dodger blue
> color sel turquoise
> color sel medium turquoise
> color sel light sea green
> color sel cornflower blue
> color sel dark cyan
> color sel medium aquamarine
> color sel teal
> color sel steel blue
> color sel cadet blue
> color sel light slate gray
> color sel slate gray
> color sel dark slate gray
> color sel midnight blue
> color sel hot pink
> color sel orange
> color sel orange red
> color sel red
> color sel yellow green
> color sel dark goldenrod
> color sel medium spring green
> color sel byelement
[Repeated 1 time(s)]
> color sel bychain
> color sel dark turquoise
> color sel medium spring green
> color sel dodger blue
> color sel medium turquoise
> color sel cornflower blue
> color sel light sea green
> color sel byelement
> color sel byhetero
> color sel bychain
> hide #1 models
> hide sel atoms
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> hide sel & #2 atoms
> show sel & #2 atoms
> color (#2 & sel) yellow
> color (#2 & sel) byhetero
> select add #1
12278 atoms, 12626 bonds, 1573 residues, 2 models selected
> select subtract #1
34 atoms, 36 bonds, 1 residue, 1 model selected
> select clear
> lighting full
> lighting soft
> lighting simple
> lighting flat
> lighting shadows true intensity 0.5
> lighting full
> lighting shadows false
> lighting shadows true
> lighting shadows false
> graphics silhouettes false
> graphics silhouettes true
> lighting soft
> lighting simple
> lighting soft
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 wt_21h.mrc"
Opened 25.3.14 wt_21h.mrc as #3, grid size 140,140,140, pixel 1.32, shown at
level 0.15, step 1, values float32
> volume #3 level 0.06894
> volume #3 style mesh
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> volume zone #1 centerSelected true radius 5
Expected a keyword
> volume zone #3 centerSelected true radius 5
Expected a keyword
> volume zone #3 nearAtoms sel & #2 range 7.92
> volume #3 level 0.0931
> color zone #3 near sel & #2 distance 7.92
> undo
> surface dust #3 size 13.2
> undo
[Repeated 1 time(s)]
> volume zone #3 nearAtoms sel & #2 range 7.92
> volume #3 orthoplanes xyz positionPlanes 70,70,70 style image region all
> mousemode rightMode "move planes"
> undo
> volume zone #3 nearAtoms sel & #2 range 7.92
> undo
[Repeated 1 time(s)]
> volume planes z style image imageMode "full region"
> mousemode rightMode "move planes"
> volume region all imageMode "full region"
> volume unzone
> mousemode rightMode "crop volume"
> undo
[Repeated 2 time(s)]
> volume style surface
> volume style mesh
> redo
[Repeated 4 time(s)]
> volume zone #3 nearAtoms sel & #2 range 7.92
> volume #3 region 0,0,0,139,136,139
> volume showOutlineBox false
> volume zone #3 nearAtoms sel & #2 range 5
> volume #3 change image level -0.0124,0 level 0.1501,0.8 level 0.7728,1
> volume #3 level 0.07773
> volume zone #3 nearAtoms sel & #2 range 3
> volume zone #3 nearAtoms sel & #2 range 2
> volume zone #3 nearAtoms sel & #2 range 2.5
> volume zone #3 nearAtoms sel & #2 range 2.3
> volume zone #3 nearAtoms sel & #2 range 2.4
> vop gaussian #3 sdev 3.96
Opened 25.3.14 wt_21h.mrc gaussian as #4, grid size 140,140,140, pixel 1.32,
shown at step 1, values float32
> undo
> volume zone #3 nearAtoms sel & #2 range 2.4
> volume #!4 region all imageMode "full region"
> volume unzone #!4
> mousemode rightMode "crop volume"
> volume zone #4 nearAtoms sel & #2 range 7.92
> volume #!4 style surface
> volume #!4 style mesh
> volume #4 region 0,0,0,139,139,139
> close #4
> show #!3 models
> volume zone #3 nearAtoms sel & #2 range 2.4
> volume zone #3 nearAtoms sel & #2 range 2.5
> volume zone #3 nearAtoms sel & #2 range 2.3
> volume zone #3 nearAtoms sel & #2 range 2.5
> volume zone #3 nearAtoms sel & #2 range 2.6
> volume #3 step 2
> volume #3 step 1
> transparency 50
> volume style mesh
> volume style image
> volume style mesh
> volume style surface
> volume style mesh
> volume hide
> volume show
> volume region all imageMode "full region"
> volume unzone
> mousemode rightMode "crop volume"
> volume show
> volume hide
> volume show
> volume zone #3 nearAtoms sel & #2 range 7.92
> volume zone #3 nearAtoms sel & #2 range 2.6
> volume style surface
> volume style mesh
> volume #3 level 0.1293
> volume zone #3 nearAtoms sel & #2 range 2.6
> volume zone #3 nearAtoms sel & #2 range 2.5
> volume zone #3 nearAtoms sel & #2 range 2.3
> volume zone #3 nearAtoms sel & #2 range 2
> volume style surface
> select clear
> volume zone #3 nearAtoms sel & #2 range 2.3
no atoms specified for zone
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> volume zone #3 nearAtoms sel & #2 range 2.3
> volume zone #3 nearAtoms sel & #2 range 2.5
> volume zone #3 nearAtoms sel & #2 range 2.6
> volume zone #3 nearAtoms sel & #2 range 2.7
> volume zone #3 nearAtoms sel & #2 range 3
> ui tool show "Volume Viewer"
> ui mousemode right "map eraser"
> volume erase #3 center 61.064,98.558,92.625 radius 2.6964
Opened 25.3.14 wt_21h.mrc copy as #5, grid size 140,140,140, pixel 1.32, shown
at step 1, values float32
> hide #!5 models
> hide #4 models
> show #4 models
> show #!3 models
> show #!5 models
Can only have one displayed volume when erasing
> hide #!3 models
> hide #4 models
> show #4 models
> volume erase #5 center 55.434,101.74,92.709 radius 2.6796 outside true
> undo
[Repeated 1 time(s)]
> hide #!5 models
> show #!3 models
> volume copy #3 subregion 43,72,69,48,77,74
Opened 25.3.14 wt_21h.mrc copy as #6, grid size 6,6,6, pixel 1.32, shown at
step 1, values float32
> undo
> close #6
> show #!5 models
> close #5
> show #!3 models
> volume erase #3 center 61.457,99.29,91.494 radius 2.5872
Opened 25.3.14 wt_21h.mrc copy as #5, grid size 140,140,140, pixel 1.32, shown
at step 1, values float32
> hide #!5 models
> show #!3 models
> select add #3
170 atoms, 180 bonds, 5 residues, 5 models selected
> select add #3
170 atoms, 180 bonds, 5 residues, 5 models selected
> select add #3
170 atoms, 180 bonds, 5 residues, 5 models selected
> select add #2
3197 atoms, 3299 bonds, 397 residues, 5 models selected
> select add #3
3197 atoms, 3299 bonds, 397 residues, 5 models selected
> select subtract #2
136 atoms, 144 bonds, 4 residues, 4 models selected
> select add #3
136 atoms, 144 bonds, 4 residues, 4 models selected
> show #!5 models
> select clear
Can only have one displayed volume when erasing
> hide #!3 models
> volume erase #5 center 51.528,102.57,89.589 radius 2.5872
> hide #!5 models
> show #!3 models
> volume erase #3 center 60.316,99.236,88.608 radius 2.5872
Opened 25.3.14 wt_21h.mrc copy as #6, grid size 140,140,140, pixel 1.32, shown
at step 1, values float32
> hide #!6 models
> show #!6 models
> close #5-6
> show #!3 models
> hide #4 models
> show #4 models
> hide #!3 models
> show #!3 models
> volume zone #3 nearAtoms sel & #2 range 2.7
no atoms specified for zone
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> volume zone #3 nearAtoms sel & #2 range 5
> volume #3 level 0.09062
> close #4
> ui mousemode right "map eraser"
> volume erase #3 center 61.446,97.572,81.679 radius 2.587
Opened 25.3.14 wt_21h.mrc copy as #5, grid size 140,140,140, pixel 1.32, shown
at step 1, values float32
> volume erase #5 center 61.446,97.572,81.679 radius 2.587
> volume erase #5 center 62.975,102.89,92.894 radius 2.587 outside true
> volume erase #5 center 62.975,102.89,92.894 radius 5.9136 outside true
> volume copy #5 subregion 36,74,59,46,84,69
Opened 25.3.14 wt_21h.mrc copy as #6, grid size 11,11,11, pixel 1.32, shown at
step 1, values float32
> close #6
> close #5
> show #!3 models
> ui mousemode right "pick blobs"
> measure blob #!3.1 triangleNumber 122911 color #0000ccff outline true
Surface 25.3.14 wt_21h.mrc #3.1 blob:
volume = 86966
area = 1.0243e+05
size = 107.18 107.18 66.96
> hide #!3 models
> show #!3 models
> hide #!3 target m
> close #3
> close #4
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 wt_21h.mrc"
Opened 25.3.14 wt_21h.mrc as #3, grid size 140,140,140, pixel 1.32, shown at
level 0.15, step 1, values float32
> volume #3 level 0.09218
> volume zone #3 nearAtoms sel & #2 range 5
> ui mousemode right "map eraser"
> volume erase #3 center 65.186,103.07,92.398 radius 9.9792 outside true
Opened 25.3.14 wt_21h.mrc copy as #5, grid size 140,140,140, pixel 1.32, shown
at step 1, values float32
> volume erase #5 center 60.525,96.343,91.916 radius 3.8808
> volume erase #5 center 55.484,102.75,91.722 radius 2.9568
> volume erase #5 center 58.525,100.41,96.734 radius 2.9568
> volume erase #5 center 62.237,108.25,100.02 radius 2.9568
> volume erase #5 center 57.521,99.772,90.463 radius 2.9568
> volume erase #5 center 66.263,94.957,88.061 radius 7.2072
> volume erase #5 center 61.286,98.365,82.255 radius 8.4084
> volume #3 level 0.1223
> volume #5 level 0.08021
> hide #!3 models
> hide #!5 models
> show #!3 models
> volume erase #3 center 61.286,98.365,82.255 radius 8.4084
Opened 25.3.14 wt_21h.mrc copy as #6, grid size 140,140,140, pixel 1.32, shown
at step 1, values float32
> close #6
> show #!5 models
> volume #5 level 0.09047
> volume erase #5 center 62.602,108.27,84.121 radius 4.0656
> volume erase #5 center 59.315,109.9,85.976 radius 4.0656
> volume #5 level 0.1007
> volume erase #5 center 69.232,108.52,96.691 radius 4.0656
> volume erase #5 center 67.403,105.5,98.516 radius 4.0656
> volume erase #5 center 68.509,97.638,98.61 radius 4.0656
> volume #5 level 0.05455
> volume #5 level 0.09047
> volume erase #5 center 60.767,97.947,97.969 radius 4.0656
> volume #5 style mesh
> volume #5 style image
> volume #5 style surface
> volume erase #5 center 65.772,112.15,94.619 radius 4.0656
> volume erase #5 center 62.908,113.75,90.217 radius 4.0656
> volume erase #5 center 69.913,109.49,86.52 radius 4.0656
> volume erase #5 center 70.694,109.41,91.18 radius 4.0656
> volume erase #5 center 69.266,110.31,90.464 radius 4.0656
> volume erase #5 center 69.468,104.14,85.347 radius 4.0656
> volume erase #5 center 73.641,101.75,87.342 radius 4.0656
> volume erase #5 center 71.502,97.007,92.743 radius 3.696
> volume erase #5 center 67.169,98.522,91.44 radius 3.696
> volume erase #5 center 74.962,107.11,93.794 radius 3.696
> volume erase #5 center 67.306,112.06,85.746 radius 3.696
> volume erase #5 center 72.403,107.84,87.289 radius 3.696
> volume erase #5 center 55.617,110.08,90.885 radius 3.696
> volume erase #5 center 57.444,110.11,95.639 radius 3.696
> hide #!5 models
> show #!5 models
> hide #4 models
> volume #5 style mesh
> close #3
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15 21h-wt.cxs"
> volume #5 color cyan
> volume #5 color #00aaff
[Repeated 1 time(s)]
> volume #5 color #0055ff
> volume #5 color #00aaff
> lighting flat
> lighting full
> lighting soft
> lighting simple
> lighting soft
> volume #5 level 0.09047
> volume #5 level 0.08936
> ui mousemode right "map eraser"
> volume erase #5 center 64.232,93.834,94.963 radius 1.0167
> volume erase #5 center 64.721,108.19,93.473 radius 1.0167
> volume erase #5 center 68.835,101.83,89.468 radius 1.0167
> lighting shadows true intensity 0.5
> lighting flat
> lighting simple
> lighting full
[Repeated 1 time(s)]
> lighting simple
> lighting soft
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> ui tool show "Color Actions"
> color sel gold
> color sel dark goldenrod
> color sel peru
> color sel dark salmon
> color sel green
> color sel orange
> color sel light sea green
> color sel cornflower blue
> color sel purple
> color sel green yellow
> color sel sandy brown
> color sel indian red
> color sel dark red
> color sel orange red
[Repeated 1 time(s)]
> color sel orange
> color sel lime
> color sel forest green
> color sel light sea green
> color sel blue
> color sel cornflower blue
> color sel purple
> color sel magenta
> color sel white
> color sel gray
> color sel dim gray
> color sel black
> color sel peru
> color sel yellow green
> color sel dark turquoise
> color sel turquoise
> color sel dark cyan
> color sel steel blue
> color sel light slate gray
> color sel indian red
> color sel yellow
> color sel dark red
> color sel orange
> color sel gold
> color sel goldenrod
> color sel sandy brown
> color sel dark orange
> color sel orange
> color sel olive
> color sel salmon
> color sel dark khaki
> color sel peru
> color sel light salmon
> color sel salmon
> color sel lime green
> color sel lime
> color sel olive
> color sel dark salmon
> color sel salmon
> color sel light salmon
> color sel salmon
> color sel dark turquoise
> color sel medium spring green
> color sel medium turquoise
> color sel dark blue
> color sel indigo
> color sel royal blue
> color sel rebecca purple
> color sel slate blue
> color sel medium orchid
> color sel purple
> color sel salmon
[Repeated 1 time(s)]
> color sel byhetero
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15 21h-wt.cxs"
> nucleotides sel & #2 atoms
> style nucleic & sel & #2 stick
Changed 0 atom styles
> nucleotides sel & #2 fill
> style nucleic & sel & #2 stick
Changed 0 atom styles
> ui tool show "Side View"
> select clear
> color #5 #0055ffff models
> color #5 blue models
> color #5 #0055ffff models
> color #5 #5555ffff models
> color #5 #0055ffff models
[Repeated 2 time(s)]
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15 21h-wt.cxs"
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A #1/B #1/C #1/D #2/D
Alignment identifier is 1
> select #1/A-D:343 #2/D:343
25 atoms, 20 bonds, 5 residues, 2 models selected
> select #1/A-D:343 #2/D:343
25 atoms, 20 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [262] RMSD: 0.090
> hide #2 models
> show #2 models
> hide #!5 models
> show #!5 models
> select #1/A-D:108 #2/D:108
40 atoms, 35 bonds, 5 residues, 2 models selected
> select #1/A-D:103-108 #2/D:103-108
235 atoms, 230 bonds, 30 residues, 2 models selected
1 [ID: 1] region 5 chains [22-27] RMSD: 0.101
> select #1/A-D:119 #2/D:119
45 atoms, 40 bonds, 5 residues, 2 models selected
> select #1/A-D:119 #2/D:119
45 atoms, 40 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [38] RMSD: 0.083
> show sel & #2 atoms
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> select ~sel & ##selected
15135 atoms, 15565 bonds, 1960 residues, 2 models selected
> color (#2 & sel) byhetero
> select clear
> select #1/A-D:119 #2/D:119
45 atoms, 40 bonds, 5 residues, 2 models selected
> select #1/A-D:119 #2/D:119
45 atoms, 40 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [38] RMSD: 0.083
> select #1/A-D:228 #2/D:228
45 atoms, 40 bonds, 5 residues, 2 models selected
> select #1/A-D:228 #2/D:228
45 atoms, 40 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [147] RMSD: 0.074
> show sel & #2 atoms
> select #1/A-D:118 #2/D:118
55 atoms, 50 bonds, 5 residues, 2 models selected
> select #1/A-D:118 #2/D:118
55 atoms, 50 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [37] RMSD: 0.083
> select #1/A-D:138 #2/D:138
25 atoms, 20 bonds, 5 residues, 2 models selected
> select #1/A-D:138 #2/D:138
25 atoms, 20 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [57] RMSD: 0.081
> select #1/A-D:118 #2/D:118
55 atoms, 50 bonds, 5 residues, 2 models selected
> select #1/A-D:118 #2/D:118
55 atoms, 50 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [37] RMSD: 0.083
> show sel & #2 atoms
> select #1/A-D:368 #2/D:368
55 atoms, 50 bonds, 5 residues, 2 models selected
> select #1/A-D:368 #2/D:368
55 atoms, 50 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [287] RMSD: 0.099
> show sel & #2 atoms
> select #1/A-D:293 #2/D:293
55 atoms, 50 bonds, 5 residues, 2 models selected
> select #1/A-D:293 #2/D:293
55 atoms, 50 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [212] RMSD: 0.083
> show sel & #2 atoms
> select #1/A-D:152-153 #2/D:152-153
85 atoms, 80 bonds, 10 residues, 2 models selected
> select #1/A-D:152-153 #2/D:152-153
85 atoms, 80 bonds, 10 residues, 2 models selected
1 [ID: 1] region 5 chains [71-72] RMSD: 0.068
> select #1/A-D:152 #2/D:152
55 atoms, 50 bonds, 5 residues, 2 models selected
> select #1/A-D:152 #2/D:152
55 atoms, 50 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [71] RMSD: 0.069
> show sel & #2 atoms
> select #1/A-D:230 #2/D:230
45 atoms, 40 bonds, 5 residues, 2 models selected
> select #1/A-D:230 #2/D:230
45 atoms, 40 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [149] RMSD: 0.074
> select #1/A-D:278 #2/D:278
45 atoms, 40 bonds, 5 residues, 2 models selected
> select #1/A-D:278-279 #2/D:278-279
75 atoms, 70 bonds, 10 residues, 2 models selected
1 [ID: 1] region 5 chains [197-198] RMSD: 0.076
> select
> #1/A-D:96-102,115-118,121-124,129-139,157-162,173-177,180-185,190-196,203-208,211-217,224-225,232-234,237-245,251-259,262-269,277-284,287-293,302-306,313-316,349-353,356-361,369-376,392-399,403-408,419-429,438-448
> #2/D:96-102,115-118,121-124,129-139,157-162,173-177,180-185,190-196,203-208,211-217,224-225,232-234,237-245,251-259,262-269,277-284,287-293,302-306,313-316,349-353,356-361,369-376,392-399,403-408,419-429,438-448
6870 atoms, 6945 bonds, 865 residues, 2 models selected
> select #1/A-D:278 #2/D:278
45 atoms, 40 bonds, 5 residues, 2 models selected
> select #1/A-D:278 #2/D:278
45 atoms, 40 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [197] RMSD: 0.076
> select #1/A-D:277 #2/D:277
45 atoms, 40 bonds, 5 residues, 2 models selected
> select #1/A-D:277 #2/D:277
45 atoms, 40 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [196] RMSD: 0.075
> show sel & #2 atoms
> select #1/A-D:134 #2/D:134
40 atoms, 35 bonds, 5 residues, 2 models selected
> select #1/A-D:134 #2/D:134
40 atoms, 35 bonds, 5 residues, 2 models selected
> select #1/A-D:134 #2/D:134
40 atoms, 35 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [53] RMSD: 0.077
> select #1/A-D:127 #2/D:127
40 atoms, 35 bonds, 5 residues, 2 models selected
> select #1/A-D:127 #2/D:127
40 atoms, 35 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [46] RMSD: 0.084
> select #1/A-D:134 #2/D:134
40 atoms, 35 bonds, 5 residues, 2 models selected
> select #1/A-D:134 #2/D:134
40 atoms, 35 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [53] RMSD: 0.077
> select #1/A-D:140-141 #2/D:140-141
80 atoms, 75 bonds, 10 residues, 2 models selected
> select #1/A-D:140-141 #2/D:140-141
80 atoms, 75 bonds, 10 residues, 2 models selected
1 [ID: 1] region 5 chains [59-60] RMSD: 0.093
> select
> #1/A-D:96-102,115-118,121-124,129-139,157-162,173-177,180-185,190-196,203-208,211-217,224-225,232-234,237-245,251-259,262-269,277-284,287-293,302-306,313-316,349-353,356-361,369-376,392-399,403-408,419-429,438-448
> #2/D:96-102,115-118,121-124,129-139,157-162,173-177,180-185,190-196,203-208,211-217,224-225,232-234,237-245,251-259,262-269,277-284,287-293,302-306,313-316,349-353,356-361,369-376,392-399,403-408,419-429,438-448
6870 atoms, 6945 bonds, 865 residues, 2 models selected
> select #1/A-D:140-141 #2/D:140-141
80 atoms, 75 bonds, 10 residues, 2 models selected
> select #1/A-D:140 #2/D:140
40 atoms, 35 bonds, 5 residues, 2 models selected
> select #1/A-D:140 #2/D:140
40 atoms, 35 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [59] RMSD: 0.092
> select #1/A-D:127 #2/D:127
40 atoms, 35 bonds, 5 residues, 2 models selected
> select #1/A-D:127 #2/D:127
40 atoms, 35 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [46] RMSD: 0.084
> select #1/A-D:134 #2/D:134
40 atoms, 35 bonds, 5 residues, 2 models selected
> select #1/A-D:134 #2/D:134
40 atoms, 35 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [53] RMSD: 0.077
> show sel & #2 atoms
> select #1/A-D:151 #2/D:151
40 atoms, 35 bonds, 5 residues, 2 models selected
> select #1/A-D:151 #2/D:151
40 atoms, 35 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [70] RMSD: 0.074
> show sel & #2 atoms
> select #1/A-D:130 #2/D:130
55 atoms, 50 bonds, 5 residues, 2 models selected
> select #1/A-D:130 #2/D:130
55 atoms, 50 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [49] RMSD: 0.083
> select #1/A-D:136 #2/D:136
45 atoms, 40 bonds, 5 residues, 2 models selected
> select #1/A-D:136 #2/D:136
45 atoms, 40 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [55] RMSD: 0.076
> show sel & #2 atoms
> select #1/A-D:156 #2/D:156
55 atoms, 50 bonds, 5 residues, 2 models selected
> select #1/A-D:156 #2/D:156
55 atoms, 50 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [75] RMSD: 0.071
> show sel & #2 atoms
> select #1/A-D:275 #2/D:275
50 atoms, 50 bonds, 5 residues, 2 models selected
> select #1/A-D:275 #2/D:275
50 atoms, 50 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [194] RMSD: 0.077
> show sel & #2 atoms
> select #1/A-D:274 #2/D:274
60 atoms, 60 bonds, 5 residues, 2 models selected
> select #1/A-D:274 #2/D:274
60 atoms, 60 bonds, 5 residues, 2 models selected
> select #1/A-D:274-276 #2/D:274-276
170 atoms, 180 bonds, 15 residues, 2 models selected
1 [ID: 1] region 5 chains [193-195] RMSD: 0.077
> select clear
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15 21h-wt.cxs"
> view
> view name 1_initial
> view list
Named views: 1_initial
> view 1_initial
> lighting shadows true intensity 0.1
> lighting multiShadow 100
> graphics silhouettes true width 3
> graphics silhouettes true width 2
> view 1_initial
> graphics silhouettes true width 1
> graphics silhouettes true width 1.5
> transparency 70 target c
> transparency 30 target c
> transparency 20 target c
> lighting full
> lighting soft
> lighting flat
> lighting full
> lighting shadows false
> lighting shadows true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> lighting full
> lighting flat
> lighting full
> lighting soft
> lighting simple
[Repeated 1 time(s)]
> lighting full
> lighting flat
> lighting full
> lighting simple
> lighting soft
> lighting simple
> lighting soft
> lighting simple
> lighting full
> lighting simple
> lighting full
> transparency 30 target c
> transparency 50 target c
> view 1_initial
> view name 2_initial
> ui windowfill toggle
[Repeated 1 time(s)]
> view 1_initial
> view 2_initial
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15 21h-wt.cxs"
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> select ~sel & ##selected
15135 atoms, 15565 bonds, 1960 residues, 2 models selected
> color pale violet red target c
> color gold target a
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> color (#2 & sel) cyan
> ui tool show "Color Actions"
> color (sel) byhetero
> lighting flat
> lighting full
> lighting soft
> lighting full
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> select ~sel & ##selected
15135 atoms, 15565 bonds, 1960 residues, 2 models selected
> color (#2 & sel) byhetero
> select clear
> cartoon style width 1.0
> lighting flat
> lighting full
> lighting soft
> lighting simple
> lighting flat
> lighting full
> lighting soft
> lighting simple
> lighting soft
> lighting multiShadow 512
> lighting soft
> lighting full
> color #5 cyan models
> color #5 #0055ffff models
> color #5 #5555ffff models
> color #5 #55aaffff models
> color #5 #00aaffff models
> color #5 #aaaaffff models
> volume style #5 meshWidth 3
Invalid "style" argument: Should be one of 'image', 'mesh', 'solid', or
'surface'
> volume smoothLines true
> volume smoothLines false
> volume name 3_initial
Expected keyword "nameAppearance" or "nameForget"
> view name 3_initial
> view name 2_initial
[Repeated 1 time(s)]
> view 2_initial
> view 1_initial
> view 3_initial
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15 21h-wt.cxs"
> view 3_initial
> hide #!5 models
> log metadata #2
The model has no metadata
> log chains #2
Chain information for 25.3.14 wt 21h.pdb #2
---
Chain | Description
D | No description available
> ui mousemode right distance
> distance #2/D:368@NH2 #2/D:481@O2
Distance between 25.3.14 wt 21h.pdb #2/D ARG 368 NH2 and 21H 481 O2: 3.509Å
> ~distance #2/D:368@NH2 #2/D:481@O2
> distance #2/D:293@NH2 #2/D:368@NH2
Distance between 25.3.14 wt 21h.pdb #2/D ARG 293 NH2 and ARG 368 NH2: 4.486Å
> undo
[Repeated 1 time(s)]
> distance #2/D:368@NH2 #2/D:481@O2
Distance between 25.3.14 wt 21h.pdb #2/D ARG 368 NH2 and 21H 481 O2: 3.509Å
> hide #3.1 models
> show #3.1 models
> hide #!3 models
> show #!3 models
> close #3
> hide #!5 models
> distance #2/D:293@NH1 #2/D:481@O2
Distance between 25.3.14 wt 21h.pdb #2/D ARG 293 NH1 and 21H 481 O2: 4.362Å
> distance #2/D:293@NH2 #2/D:481@O2
Distance between 25.3.14 wt 21h.pdb #2/D ARG 293 NH2 and 21H 481 O2: 4.710Å
> distance #2/D:118@NH2 #2/D:481@O2
Distance between 25.3.14 wt 21h.pdb #2/D ARG 118 NH2 and 21H 481 O2: 4.570Å
> distance #2/D:368@NH2 #2/D:481@O2
Distance between 25.3.14 wt 21h.pdb #2/D ARG 368 NH2 and 21H 481 O2: 3.509Å
> hide #3.1 models
> hide #!3 models
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> hbonds sel & #2 reveal true
8 hydrogen bonds found
> undo
[Repeated 2 time(s)]
> select #1/A-D:402 #2/D:402
60 atoms, 60 bonds, 5 residues, 2 models selected
> select #1/A-D:402 #2/D:402
60 atoms, 60 bonds, 5 residues, 2 models selected
1 [ID: 1] region 5 chains [321] RMSD: 0.088
> hide sel & #2 atoms
> hide #4 models
> show #4 models
> hide #4 models
> hide #3.1 models
> hide #!3 models
> close #3
> show #4 models
> distance #2/D:228@OE2 #2/D:481@N1
Distance between 25.3.14 wt 21h.pdb #2/D GLU 228 OE2 and 21H 481 N1: 2.819Å
> distance #2/D:119@OE1 #2/D:481@N1
Distance between 25.3.14 wt 21h.pdb #2/D GLU 119 OE1 and 21H 481 N1: 2.688Å
> close #3
> hide #4 models
> select clear
> view 3_initial
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> select ~sel & ##selected
15135 atoms, 15565 bonds, 8 pseudobonds, 1960 residues, 3 models selected
> show sel & #2 surfaces
> select clear
> view 3_initial
> mlp #!2
Map values for surface "25.3.14 wt 21h.pdb_D SES surface": minimum -29.2, mean
-5.308, maximum 23.58
To also show corresponding color key, enter the above mlp command and add key
true
> lighting soft
> lighting flat
> lighting simple
> show #!2 cartoons
> hide #!2 surfaces
> view 3_initial
> coulombic #!2
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for 25.3.14 wt 21h.pdb_D SES surface #2.1: minimum, -21.34,
mean -2.62, maximum 9.95
To also show corresponding color key, enter the above coulombic command and
add key true
> view 3_initial
> hide #!2 surfaces
> color bfactor #!2
3061 atoms, 393 residues, 1 surfaces, atom bfactor range 39.1 to 87.1
> hide #!2 cartoons
> show #!2 cartoons
> color bfactor #!2
3061 atoms, 393 residues, 1 surfaces, atom bfactor range 39.1 to 87.1
> undo
[Repeated 3 time(s)]
> view 3_initial
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> select ~sel & ##selected
15135 atoms, 15565 bonds, 8 pseudobonds, 1960 residues, 3 models selected
> color pale violet red target a
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> color (#!2 & sel) light sea green
> color (#!2 & sel) #ffff00ff
> color (#!2 & sel) #fdfd00ff
> color (#!2 & sel) #fafa00ff
> color (#!2 & sel) #eaea00ff
> color (#!2 & sel) #dede00ff
> color (#!2 & sel) #d8d800ff
> color (#!2 & sel) #d3d300ff
> color (#!2 & sel) #cccc00ff
> color (#!2 & sel) #c8c800ff
> color (#!2 & sel) #c5c500ff
> color (#!2 & sel) #c2c200ff
> color (#!2 & sel) #c1c100ff
> color (#!2 & sel) #bfbf00ff
> color (#!2 & sel) #bebe00ff
> color (#!2 & sel) #bdbd00ff
> color (#!2 & sel) #bcbc00ff
> color (#!2 & sel) #baba00ff
> color (#!2 & sel) #b9b900ff
> color (#!2 & sel) #b6b600ff
> color (#!2 & sel) #b5b500ff
> color (#!2 & sel) #b4b400ff
> color (#!2 & sel) #b3b300ff
> color (#!2 & sel) #b1b100ff
> color (#!2 & sel) #b0b000ff
> color (#!2 & sel) #b1b100ff
> color (#!2 & sel) #b4b400ff
> color (#!2 & sel) #b5b500ff
> color (#!2 & sel) #b8b800ff
> color (#!2 & sel) #baba00ff
> color (#!2 & sel) #bcbc00ff
> color (#!2 & sel) #bdbd00ff
> color (#!2 & sel) #c2c200ff
> color (#!2 & sel) #c5c500ff
> color (#!2 & sel) #c6c600ff
> color (#!2 & sel) #c8c800ff
> color (#!2 & sel) #c7c700ff
> color (#!2 & sel) #c2c200ff
> color (#!2 & sel) #bdbd00ff
> color (#!2 & sel) #bcbc00ff
> color (#!2 & sel) #baba00ff
> color (#!2 & sel) #b9b900ff
> color (#!2 & sel) #b5b500ff
> color (#!2 & sel) #b4b400ff
> color (#!2 & sel) byhetero
> select ~sel & ##selected
15135 atoms, 15565 bonds, 8 pseudobonds, 1960 residues, 3 models selected
> color (#!2 & sel) byhetero
> lighting flat
> select clear
> lighting soft
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> ui tool show "Color Actions"
> color (#!2 & sel) #b6b600ff
> color (#!2 & sel) #bcbc00ff
> color (#!2 & sel) #bdbd00ff
> color (#!2 & sel) #bfbf00ff
> color (#!2 & sel) #c1c100ff
> color (#!2 & sel) #c2c200ff
> color (#!2 & sel) #c8c800ff
> color (#!2 & sel) #caca00ff
> color (#!2 & sel) #cece00ff
> color (#!2 & sel) #cfcf00ff
> color (#!2 & sel) #d1d100ff
> color (#!2 & sel) #d5d500ff
> color (#!2 & sel) #d6d600ff
> color (#!2 & sel) #d8d800ff
> color (#!2 & sel) #ffff7fff
> color (#!2 & sel) #ffff00ff
> color (#!2 & sel) #fafa00ff
> color (#!2 & sel) #f3f300ff
> color (#!2 & sel) #f1f100ff
> color (#!2 & sel) #e5e500ff
> color (#!2 & sel) #dcdc00ff
> color (#!2 & sel) #d1d100ff
> color (#!2 & sel) #cccc00ff
> color (#!2 & sel) #cece00ff
> color (#!2 & sel) #d1d100ff
> color (#!2 & sel) #d4d400ff
> color (#!2 & sel) #d6d600ff
> color (#!2 & sel) #dada00ff
> color (#!2 & sel) #dddd00ff
> color (#!2 & sel) #dede00ff
> color (#!2 & sel) #dfdf00ff
> color (#!2 & sel) #e1e100ff
> color (#!2 & sel) #dfdf00ff
> color (#!2 & sel) #dede00ff
> color (#!2 & sel) byhetero
> select clear
> show #!5 models
> hide #!5 models
> graphics silhouettes true width 3
> graphics silhouettes true width 2.5
> view 3_initial
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15 21h-wt.cxs"
——— End of log from Sat Mar 15 15:10:40 2025 ———
opened ChimeraX session
> show #1 models
> hide #!2 models
> select #1/A
3061 atoms, 3145 bonds, 393 residues, 1 model selected
> color sel orange
> select #1/B
3061 atoms, 3145 bonds, 393 residues, 1 model selected
> color sel light sea green
> color sel purple
> select #1/C
3061 atoms, 3145 bonds, 393 residues, 1 model selected
> color sel forest green
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #1 models
> show #1 models
> hide #!2 models
> select #1 name="21H"
Expected a keyword
> select #1/name="21H"
Expected an objects specifier or a keyword
> ui mousemode right select
> show #!2 models
> select clear
> hide #!2 models
> select #1/B:481@C3
1 atom, 1 residue, 1 model selected
> select clear
> select #1/B:481@C8
1 atom, 1 residue, 1 model selected
> select #1/B:481@C8
1 atom, 1 residue, 1 model selected
> select clear
> ui mousemode right select
> select clear
> select #1/B:481@C3
1 atom, 1 residue, 1 model selected
> select #1/B:481@O1
1 atom, 1 residue, 1 model selected
Drag select of 1 atoms, 1 bonds
> select add #1/B:481@C2
2 atoms, 1 bond, 1 residue, 1 model selected
> select add #1/B:481@N2
3 atoms, 1 bond, 1 residue, 1 model selected
> select add #1/B:481@C26
1 atom, 1 bond, 1 residue, 1 model selected
> select add #1/B:481@C15
2 atoms, 1 bond, 1 residue, 1 model selected
> select #1 21h
Expected a keyword
> select #1
12244 atoms, 12590 bonds, 1572 residues, 1 model selected
> select clear
> ui mousemode right select
> select #1/B:481@C21
1 atom, 1 residue, 1 model selected
> select down
1 atom, 1 residue, 1 model selected
> select up
34 atoms, 36 bonds, 1 residue, 1 model selected
> select ~sel & ##selected
12244 atoms, 12590 bonds, 1572 residues, 1 model selected
> select ~sel & ##selected
Nothing selected
> select #1/D:481@C6
1 atom, 1 residue, 1 model selected
> select up
34 atoms, 36 bonds, 1 residue, 1 model selected
> ui tool show "Side View"
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select down
1 bond, 1 model selected
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
34 atoms, 36 bonds, 1 residue, 1 model selected
> select up
36 atoms, 37 bonds, 2 residues, 1 model selected
> select up
68 atoms, 72 bonds, 2 residues, 1 model selected
> select add #1/C:481@C4
69 atoms, 72 bonds, 3 residues, 1 model selected
> select up
102 atoms, 108 bonds, 3 residues, 1 model selected
> select up
9183 atoms, 9445 bonds, 1179 residues, 1 model selected
> select down
102 atoms, 108 bonds, 3 residues, 1 model selected
> select up
104 atoms, 109 bonds, 4 residues, 1 model selected
> select up
136 atoms, 144 bonds, 4 residues, 1 model selected
> ui tool show "Color Actions"
> show #!2 models
> color sel #ffff7fff
> color sel #ffff00ff
> color sel #fefe00ff
> color sel #fcfc00ff
> color sel #f3f300ff
> color sel #f1f100ff
> color sel #efef00ff
> color sel #eeee00ff
> color sel #ebeb00ff
> color sel #e8e800ff
> color sel #e7e700ff
> color sel #e6e600ff
> color sel #e5e500ff
> color sel #e3e300ff
> color sel #e1e100ff
> color sel #dddd00ff
> color sel #dcdc00ff
> color sel #d9d900ff
> color sel #d8d800ff
> color sel #d6d600ff
> color sel #d5d500ff
> color sel #d6d600ff
> color sel #d8d800ff
> color sel #dada00ff
> hide #!2 models
> show #!2 models
> hide #1 models
> show #1 models
> hide #1 models
> hide #!2 models
> show #!2 models
> select add #2/D:481@C1
137 atoms, 144 bonds, 5 residues, 2 models selected
> select up
170 atoms, 180 bonds, 5 residues, 2 models selected
> hide #!2 models
> show #1 models
> select clear
> select add #1/B:481@C1
1 atom, 1 residue, 1 model selected
> select up
34 atoms, 36 bonds, 1 residue, 1 model selected
> select up
3061 atoms, 3145 bonds, 393 residues, 1 model selected
> select down
34 atoms, 36 bonds, 1 residue, 1 model selected
> select ~sel & ##selected
12210 atoms, 12554 bonds, 1571 residues, 1 model selected
> select ~sel & ##selected
34 atoms, 36 bonds, 1 residue, 1 model selected
> select ~sel & ##selected
12210 atoms, 12554 bonds, 1571 residues, 1 model selected
> select ~sel & ##selected
34 atoms, 36 bonds, 1 residue, 1 model selected
> select up
36 atoms, 37 bonds, 2 residues, 1 model selected
> select up
68 atoms, 72 bonds, 2 residues, 1 model selected
> select add #1/C:481@C8
69 atoms, 72 bonds, 3 residues, 1 model selected
> select up
102 atoms, 108 bonds, 3 residues, 1 model selected
> select up
9183 atoms, 9445 bonds, 1179 residues, 1 model selected
> select down
102 atoms, 108 bonds, 3 residues, 1 model selected
> select add #1/A:481@C1
103 atoms, 108 bonds, 4 residues, 1 model selected
> select up
136 atoms, 144 bonds, 4 residues, 1 model selected
> color sel byhetero
> view name tert_1
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15
> 21h-wt-2.cxs"
> show #!2 models
> hide #1 models
> show #1 models
> hide #!2 models
> select clear
> view name 3_initial
> view 2_initial
> view 3_initial
> view 1_initial
> show #!2 models
> hide #1 models
> view name 3_initial
> view 3_initial
> save "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.15
> 21h-wt-2.cxs"
> view tert_1
> show #1 models
> hide #!2 models
> select clear
> view list
Named views: 1_initial, 2_initial, 3_initial, tert_1
> view 1_initial
> view 2_initial
> view 3_initial
> show #!2 models
> hide #1 models
Drag select of 2 residues
> ui mousemode right select
> select clear
> view tert_1
> show #1 models
> hide #!2 models
> graphics silhouettes true
> select
15305 atoms, 15745 bonds, 8 pseudobonds, 1965 residues, 6 models selected
> select ::name="21H"
170 atoms, 180 bonds, 5 residues, 2 models selected
> select ~sel & ##selected
15135 atoms, 15565 bonds, 8 pseudobonds, 1960 residues, 3 models selected
> hide sel & #1 atoms
> select clear
> view
> show #!2 models
> hide #!2 models
> show #!2 models
> show #4 models
> hide #4 models
> show #!5 models
> hide #!5 models
> hide #!2 models
> hide #1 models
> show #1 models
> graphics silhouettes true
> graphics silhouettes true width 2
> graphics silhouettes true width 1
> graphics silhouettes true width 1.5
> save C:\Users\hp/Desktop\image3.png supersample 3
> lighting soft
> lighting simple
> lighting full
> lighting flat
> lighting soft
> lighting flat
> lighting soft
> lighting simple
> lighting full
> lighting flat
> lighting soft
> cd "C:/Users/hp/坚果云/科研/研二/TEXAS/建模/25.3.16 画图"
Current working directory is: C:\Users\hp\坚果云\科研\研二\TEXAS\建模\25.3.16 画图
> save C:\Users\hp/Desktop\image4.png supersample 3
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> preset "overall look" "publication 2 (depth-cued)"
Using preset: Overall Look / Publication 2 (Depth-Cued)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes f
lighting depthCue t
> preset "overall look" interactive
Using preset: Overall Look / Interactive
> set bgColor transparent
Preset expands to these ChimeraX commands:
~set bg
graphics silhouettes f
lighting depthCue t
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
> set bgColor #ffffff00
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> save "C:/Users/hp/坚果云/科研/研二/TEXAS/建模/25.3.16 画图/25.3.16 画图 wt21h.cxs"
> show #!2 models
> show #4 models
> hide #1 models
> show #!5 models
> view list
Named views: 1_initial, 2_initial, 3_initial, tert_1
> view 1_initial
> view 2_initial
> view 3_initial
> hide #4 models
> graphics silhouettes true width 2
> save C:\Users\hp/Desktop\image4.png supersample 3
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 wt_21h.mrc"
Opened 25.3.14 wt_21h.mrc as #3, grid size 140,140,140, pixel 1.32, shown at
level 0.15, step 1, values float32
> volume #3 level 0.07714
> hide #!3 models
> show #!3 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!3 models
> hide #!5 models
> show #!5 models
> show #!3 models
> hide #!3 models
> rename #5 "25.3.14 wt_21h.mrc 21h density"
> show #5.2 models
> hide #5.2 models
> hide #5.1 models
> show #5.1 models
> show #!3 models
> hide #!3 models
> show #!3 models
Drag select of 2 residues, 1 bonds, 3 25.3.14 wt_21h.mrc
> select add #3
17 atoms, 1 bond, 2 residues, 6 models selected
> select subtract #3
17 atoms, 1 bond, 2 residues, 2 models selected
> select add #2
3061 atoms, 3155 bonds, 4 pseudobonds, 393 residues, 3 models selected
> select subtract #2
1 model selected
> hide #!3 models
> show #!3 models
> volume #3 level 0.09218
> hide #!5 models
> ui mousemode right "map eraser"
> hide #6 models
> show #6 models
> hide #!3 models
> show #!3 models
> volume erase #3 center 62.69,105.1,94.749 radius 15.893 outside true
Opened 25.3.14 wt_21h.mrc copy as #7, grid size 140,140,140, pixel 1.32, shown
at step 1, values float32
> transparency 50 target s
> hide #6 models
> show #6 models
> transparency 90 target s
> transparency 10 target s
> transparency 20 target s
> transparency 50 target s
> transparency 0 target c
> volume erase #7 center 76.523,109.52,100.41 radius 3.5112
> volume erase #7 center 72.058,115.09,96.752 radius 3.5112
> volume erase #7 center 74.36,119.22,94.186 radius 3.5112
> volume erase #7 center 69.758,101.63,108.8 radius 3.5112
> volume erase #7 center 62.199,108.6,101.69 radius 3.5112
> volume erase #7 center 58.309,96.828,101.85 radius 3.5112
> volume erase #7 center 60.68,100.3,100.16 radius 1.386
> volume erase #7 center 67.626,102.69,98.062 radius 1.386
> volume erase #7 center 62.979,103.41,93.61 radius 3.1416
> volume erase #7 center 60.901,105.73,90.505 radius 2.9568
> volume erase #7 center 61.499,105.84,91.783 radius 2.9568
> volume erase #7 center 63.142,104.78,91.063 radius 2.9568
> volume erase #7 center 63.508,106.53,90.43 radius 2.9568
> volume erase #7 center 64.199,106.94,90.048 radius 2.9568
> volume erase #7 center 66.648,104.34,91.488 radius 2.1252
> volume erase #7 center 69.285,103.91,92.722 radius 2.1252
> volume erase #7 center 69.538,104.29,91.851 radius 2.1252
> volume erase #7 center 71.21,103.43,93.481 radius 2.1252
> volume erase #7 center 71.299,103.39,93.068 radius 2.1252
> volume erase #7 center 72.911,102.19,94.843 radius 2.1252
> volume erase #7 center 73.094,101.84,96.16 radius 2.1252
> volume erase #7 center 62.035,103.31,86.972 radius 1.2012
> show #!5 models
> save "C:/Users/hp/坚果云/科研/研二/TEXAS/建模/25.3.16 画图/25.3.16 -2 画图 wt21h.cxs"
> color #7 #ffffff80 models
> color #7 #f4f4f480 models
> color #7 #e8e8e880 models
> color #7 #e5e5e580 models
> select down
Nothing selected
> transparency 60 target s
> transparency 70 target s
> hide #!7 models
> show #!7 models
> transparency 50 target c
> transparency 10 target c
> transparency 100 target c
> transparency 1 target c
> transparency 100 target c
> transparency 0 target c
> transparency 1 target c
> transparency 10 target c
> transparency 90 target c
> transparency 10 target c
> transparency 0 target c
> hide #!7 models
> show #!7 models
> transparency 50 target c
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> color #7 #ffffff4c models
> color #7 #00ffff4c models
> undo
[Repeated 9 time(s)]
> color #7 #ffffff4c models
> color #7 #b9b9b94c models
> color #7 #a8a8a84c models
> color #7 #c7c7c74c models
> hide #!2 models
> show #!2 models
> hide #7.1.1 models
> show #7.1.1 models
> hide #7.1.2 models
> show #7.1.2 models
> hide #7.1.2 models
> hide #7.1.1 models
> show #7.1.2 models
> show #7.1.1 models
> hide #7.1.2 models
> hide #7.1.1 models
> hide #!7.1 models
> show #7.1 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> hide #7.1 models
> show #7.1 models
> hide #!7 models
> show #!7 models
> hide #2.1 models
> show #2.1 models
> show #!5 models
> transparency 50 target c
> view list
Named views: 1_initial, 2_initial, 3_initial, tert_1
> view 3_initial
> transparency 60 target c
> transparency 70 target c
> hide #!5 models
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/2hu4.pdb"
2hu4.pdb title:
N1 neuraminidase In complex with oseltamivir 2 [more info...]
Chain information for 2hu4.pdb #6
---
Chain | Description | UniProt
A B C D E F G H | neuraminidase Na | Q6DPL2_9INFA 83-470
Non-standard residues in 2hu4.pdb #6
---
G39 —
(3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic
acid (oseltamivir carboxylate)
> view #6 clip false
> close #6
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/2hu4A.pdb"
Chain information for 2hu4A.pdb #6
---
Chain | Description
A | No description available
Computing secondary structure
> matchmaker
Missing or invalid "matchAtoms" argument: empty atom specifier
> matchmaker #7 to #2
No molecules/chains to match specified
> matchmaker #6 to #2
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 25.3.14 wt 21h.pdb, chain D (#2) with 2hu4A.pdb, chain A (#6),
sequence alignment score = 1915.6
RMSD between 381 pruned atom pairs is 0.596 angstroms; (across all 385 pairs:
0.787)
> close #8
> hide #7.1 models
> ui mousemode right select
> select #6/A:118
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> select #6/A:406@CG
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select down
1 bond, 1 model selected
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> hide sel atoms
> select ~sel & ##selected
2982 atoms, 3065 bonds, 386 residues, 1 model selected
> select ~sel & ##selected
Nothing selected
> select #6/A:406@CE1
1 atom, 1 residue, 1 model selected
> select down
1 atom, 1 residue, 1 model selected
> select up
12 atoms, 12 bonds, 1 residue, 1 model selected
> select up
64 atoms, 66 bonds, 8 residues, 1 model selected
> select down
12 atoms, 12 bonds, 1 residue, 1 model selected
> select up
64 atoms, 66 bonds, 8 residues, 1 model selected
> select down
12 atoms, 12 bonds, 1 residue, 1 model selected
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
12 atoms, 12 bonds, 1 residue, 1 model selected
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel cartoons
> undo
> select #6/A:294@CG
1 atom, 1 residue, 1 model selected
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel atoms
> select #6/A:227
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
120 atoms, 121 bonds, 14 residues, 1 model selected
> select down
9 atoms, 8 bonds, 1 residue, 1 model selected
> show sel atoms
> select #6/A:276
9 atoms, 8 bonds, 1 residue, 1 model selected
> show sel atoms
> select #6/A:274
10 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> transparency 70 target c
> transparency 50 target c
> color #6 #d5d5d5ff
> color #6 #f1f1f1ff
> select #6/A
2982 atoms, 3065 bonds, 386 residues, 1 model selected
> color sel byhetero
> select clear
> select #6/A:800@C1
1 atom, 1 residue, 1 model selected
> select up
20 atoms, 20 bonds, 1 residue, 1 model selected
> ui tool show "Color Actions"
> color sel light gray
> color sel byhetero
> color sel dark turquoise
> color sel deep sky blue
> color sel medium turquoise
> color sel light sea green
> color sel medium aquamarine
[Repeated 1 time(s)]
> color sel light gray
> color sel byhetero
> view 3_initial
[Repeated 2 time(s)]
> transparency 50 target c
> transparency 20 target c
> transparency 90 target c
> transparency 80 target c
> color #6 #d5d5d5ff
> color sel byhetero
> select clear
> view 3_initial
> select #6/A
2982 atoms, 3065 bonds, 386 residues, 1 model selected
> color sel byhetero
> select clear
> select #6/A:151@CG
1 atom, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/D:151@CG
1 atom, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 2 models selected
> select add #6/A:151@CG
9 atoms, 7 bonds, 2 residues, 3 models selected
> select up
16 atoms, 14 bonds, 2 residues, 3 models selected
> hide sel atoms
> select clear
> select #2/D:228@CD
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 2 models selected
> select up
11 atoms, 9 bonds, 2 residues, 3 models selected
> hide sel atoms
> select #6/A:227@OE1
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 1 model selected
> hide sel cartoons
> undo
[Repeated 4 time(s)]
> select clear
> select #2/D:228@CD
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 2 models selected
> hide sel atoms
> select #6/A:227@CG
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 1 model selected
> hide sel cartoons
> undo
> select #6/A:227@CD
1 atom, 1 residue, 1 model selected
> select #6/A:227@CD
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 1 model selected
> hide sel cartoons
> undo
> select clear
> select #6/A:227@CD
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
120 atoms, 121 bonds, 14 residues, 1 model selected
> select down
9 atoms, 8 bonds, 1 residue, 1 model selected
> hide sel cartoons
[Repeated 1 time(s)]
> hide sel atoms
> hide sel cartoons
[Repeated 1 time(s)]
> undo
[Repeated 4 time(s)]
> hide sel atoms
> select clear
> view 3_initial
> select #6/A:119@CD
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #2/D:119@CD
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 2 models selected
> select add #6/A:119@CD
10 atoms, 8 bonds, 2 residues, 3 models selected
> select up
18 atoms, 16 bonds, 2 residues, 3 models selected
> hide sel atoms
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 2 models selected
> hide sel atoms
> select clear
> save "C:/Users/hp/坚果云/科研/研二/TEXAS/建模/25.3.16 画图/25.3.16 -3 wt21h vs
> 2hu4.cxs"
> ui mousemode right distance
> distance #6/A:800@C2 #2/D:481@C6
Distance between 2hu4A.pdb #6/A G39 800 C2 and 25.3.14 wt 21h.pdb #2/D 21H 481
C6: 1.152Å
> view 3_initial
> undo
[Repeated 2 time(s)]
> view 3_initial
> close #8
> select clear
> show #4 models
> hide #4 models
> show #!5 models
> close #8
> hide #!5 models
> hide #6 models
> show #6 models
> hide #6 models
> show #6 models
> hide #6 models
> show #6 models
> show #1 models
> hide #1 models
> show #!3 models
> hide #!3 models
> view 3_initial
[Repeated 1 time(s)]
> ui mousemode right select
> select #6/A:136
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
50 atoms, 49 bonds, 7 residues, 1 model selected
> select down
9 atoms, 8 bonds, 1 residue, 1 model selected
> show sel atoms
> transparency #6 80 cartoons
> transparency #6 50 cartoons
> transparency #6 30 cartoons
> select up
50 atoms, 49 bonds, 7 residues, 1 model selected
> select up
2962 atoms, 3045 bonds, 385 residues, 1 model selected
> select up
2982 atoms, 3065 bonds, 386 residues, 1 model selected
> select up
18287 atoms, 18810 bonds, 8 pseudobonds, 2351 residues, 10 models selected
> select clear
> view 3_initial
> select #6/A:156
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> select clear
[Repeated 1 time(s)]
> select ~sel & ##selected
Nothing selected
> select ~sel & ##selected
Nothing selected
> view name 1_pocket
> view list
Named views: 1_initial, 1_pocket, 2_initial, 3_initial, tert_1
> view 1_pocket
> ui mousemode right distance
> distance #2/D:481@C5 #6/A:800@C7
Distance between 25.3.14 wt 21h.pdb #2/D 21H 481 C5 and 2hu4A.pdb #6/A G39 800
C7: 0.921Å
> view 1_pocket
> save "C:/Users/hp/坚果云/科研/研二/TEXAS/建模/25.3.16 画图/25.3.16 -3 wt21h vs
> 2hu4.cxs"
——— End of log from Sun Mar 16 15:13:15 2025 ———
opened ChimeraX session
> ui tool show "Side View"
> close #8
> close #6
> close #3
> close #4
> show #!5 models
> hide #!5 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> close #1
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14 275Y
> 21h.pdb"
Chain information for 25.3.14 275Y 21h.pdb #1
---
Chain | Description
D | No description available
3 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Computing secondary structure
> open "C:/Users/hp/Desktop/temporary file/25.3.14 refine/25.3.14
> 275Y_21h.mrc"
Opened 25.3.14 275Y_21h.mrc as #3, grid size 140,140,140, pixel 1.32, shown at
level 0.117, step 1, values float32
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #1 target m
> view
> matchmaker #2 to #1
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 25.3.14 275Y 21h.pdb, chain D (#1) with 25.3.14 wt 21h.pdb, chain D
(#2), sequence alignment score = 1999.1
RMSD between 387 pruned atom pairs is 0.324 angstroms; (across all 387 pairs:
0.324)
> show #!2 models
> show #!3 models
> hide #!3 models
> hide #!2 models
> show #!5 models
> hide #!5 models
> show #!7 models
> hide #!7 models
> close #7
> show #!3 models
> volume #3 level 0.07145
> volume #3 level 0.03174
> ui mousemode right "map eraser"
> volume erase #3 center 91.613,64.428,80.735 radius 11.123 outside true
Opened 25.3.14 275Y_21h.mrc copy as #6, grid size 140,140,140, pixel 1.32,
shown at step 1, values float32
> volume erase #6 center 98.618,57.188,83.829 radius 4.0656
> volume erase #6 center 94.822,55.775,87.095 radius 4.0656
> volume erase #6 center 99.806,63.101,78.238 radius 4.0656
> volume erase #6 center 98.875,60.067,80.232 radius 4.0656
> volume erase #6 center 99.828,63.732,85.403 radius 4.0656
> volume erase #6 center 97.018,60.325,89.986 radius 4.0656
> volume #3 level 0.02607
> hide #!3 models
> volume #6 level 0.008529
> volume #6 level 0.01317
> volume #6 level 0.01781
> select ~sel & ##selected
Nothing selected
> select ~sel & ##selected
Nothing selected
> volume erase #6 center 89.017,59.978,87.641 radius 3.8808
> volume erase #6 center 89.59,56.822,88.154 radius 3.8808
> volume erase #6 center 86.066,53.983,82.978 radius 3.8808
> volume erase #6 center 84.604,56.863,77.134 radius 3.8808
> volume erase #6 center 83.834,58.143,83.353 radius 3.8808
> volume erase #6 center 82.162,62.096,78.133 radius 3.8808
> volume erase #6 center 83.538,63.845,87.342 radius 3.8808
> volume erase #6 center 84.743,63.525,84.101 radius 3.5112
> volume erase #6 center 91.171,63.572,89.87 radius 4.5276
> volume erase #6 center 87.038,70.196,84.957 radius 4.5276
> volume erase #6 center 89.081,68.21,88.057 radius 4.5276
> volume #6 level 0.02942
> volume erase #6 center 83.494,67.502,83.014 radius 4.5276
> volume erase #6 center 83.563,68.737,78.108 radius 4.5276
> volume erase #6 center 86.215,68.979,79.277 radius 4.5276
> volume erase #6 center 85.148,66.217,72.926 radius 4.5276
> volume erase #6 center 85.992,71.191,75.216 radius 4.5276
> volume erase #6 center 86.386,70.951,74.439 radius 4.5276
> volume erase #6 center 88.692,76.09,80.436 radius 4.5276
> view
> volume erase #6 center 91.619,75.254,83.957 radius 4.5276
> volume erase #6 center 97.416,74.451,74.986 radius 4.5276
> volume erase #6 center 98.116,74.594,80.872 radius 4.5276
> volume erase #6 center 97.535,75.817,78.546 radius 4.5276
> volume erase #6 center 100.72,69.575,79.445 radius 4.5276
> volume erase #6 center 99.211,68.146,75.47 radius 4.5276
> volume erase #6 center 97.889,64.115,73.788 radius 4.5276
> volume erase #6 center 96.919,67.665,71.956 radius 4.5276
> volume erase #6 center 96.573,64.769,75.838 radius 4.5276
> volume erase #6 center 97.42,71.047,87.625 radius 4.5276
> volume erase #6 center 97.496,65.239,86.946 radius 4.5276
> volume erase #6 center 95.709,68.07,90.4 radius 4.5276
> volume erase #6 center 94.199,70.714,87.669 radius 4.5276
> volume erase #6 center 98.677,64.318,84.679 radius 4.5276
[Repeated 1 time(s)]
> volume erase #6 center 98.956,64.424,84.286 radius 4.5276
> volume #6 style mesh
> volume erase #6 center 93.018,75.186,77.84 radius 2.1252
> volume erase #6 center 92.989,74.965,77.8 radius 2.1252
> volume erase #6 center 92.995,74.753,77.742 radius 2.1252
> close #4
> rename #6 "275y+21h density"
> show #!5 models
> hide #!5 models
> color #5 #ffffff4c models
> undo
[Repeated 1 time(s)]
> color #5 #00aaff4c models
> color #5 #0055ff4c models
> color #5 #00aaff4c models
> color #6 #00aaffff models
> hide #!5 models
> close #5
> show #!3 models
> hide #!3 models
> show #!2 models
> hide #!2 models
> show #!2 models
> volume #6 level 0.04638
> volume #6 level 0.07089
> select #1/D
3063 atoms, 3147 bonds, 393 residues, 1 model selected
> ui tool show "Color Actions"
> color sel dodger blue
> color sel cornflower blue
> color sel byhetero
> select ::name="21H"
68 atoms, 72 bonds, 2 residues, 2 models selected
> ui mousemode right select
> select clear
> select #1/D:481@C14
1 atom, 1 residue, 1 model selected
> select up
34 atoms, 36 bonds, 1 residue, 1 model selected
> color sel #00aaffff
> color sel #0055ffff
> color sel #00ffffff
> color sel #55ff00ff
> color sel #55ffffff
> color sel #5555ffff
> color sel #55aaffff
> color sel #0000ffff
> color sel #5555ffff
> color sel #55aaffff
> color sel #5555ffff
> ui tool show "Color Actions"
> color sel dodger blue
> color sel cornflower blue
> color sel byhetero
> color sel byelement
> color sel byhetero
[Repeated 1 time(s)]
> color sel teal
> color sel steel blue
> color sel dark cyan
> color sel cornflower blue
> color sel byhetero
> color sel #5454fdff
> color sel #5252f5ff
> color sel #5151f3ff
> color sel #5050efff
> color sel #5252f5ff
> color sel #5252f7ff
> color sel #5353f9ff
> color sel #5555ffff
> color sel cornflower blue
> color sel #f6f6f6ff
> color sel #f3f3f3ff
> color sel #fefefeff
> color sel #1b1b1bff
> color sel #fefefeff
> color sel #fbfbfbff
> color sel #fefefeff
> color sel #6495edff
> color sel #6496ecff
> color sel #6597eeff
> color sel #6495ebff
> color sel #5e8edfff
> color sel #5c8ad9ff
> color sel #5a87d4ff
> color sel #5681cbff
> color sel #547ec7ff
> color sel #547ec6ff
> color sel #5079beff
> color sel #5077bcff
> color sel #5078bdff
> color sel #5079beff
> color sel #608fe2ff
> color sel #6699f1ff
> color sel #679af3ff
> color sel #6ca2ffff
> color sel #00aaffff
> color sel #d5f6f6ff
> color sel #d9bcacff
> color sel #fefefeff
> color sel #eaeaeaff
> color sel #fefefeff
> color sel #008b8bff
> color sel #fefefeff
> color sel #6495edff
> color sel #ffffffff
> color sel #6495edff
> color sel #6598efff
> color sel #6ca2ffff
> color sel byhetero
> transparency #1 50 target c
> color sel #679bf4ff
> color sel #6597eeff
> color sel #6495ebff
> color sel #608fe2ff
> color sel #5682ccff
> color sel #537cc3ff
> color sel #4e75b8ff
> color sel #496eadff
> color sel #4669a5ff
> color sel #4466a1ff
> color sel #4567a2ff
> color sel #4669a5ff
> color sel #4b70b0ff
> color sel #4c72b4ff
> color sel #5079beff
> color sel #537cc3ff
> color sel #5680caff
> color sel #5783ceff
> color sel #5884d0ff
> color sel #5a87d4ff
> color sel #5986d3ff
> color sel #5883cfff
> color sel #5783ceff
> color sel #557fc8ff
> color sel #6ca2ffff
> color sel #6ba3fdff
> color sel #669bf0ff
> color sel #659aefff
> color sel #6599eeff
> color sel #6194e5ff
> color sel #5c8cd9ff
> color sel #5a89d5ff
> color sel #5a89d4ff
> color sel #5988d3ff
> color sel #5886d0ff
> color sel #5987d1ff
> color sel #5988d3ff
> color sel #5b8ad6ff
> color sel #5b8bd8ff
> color sel #5785ceff
> color sel #5683ccff
> color sel #5683cbff
> color sel #5682caff
> color sel #5480c6ff
> color sel #5480c7ff
> color sel #5581c8ff
> color sel #5682caff
> color sel #5785ceff
> color sel byhetero
> select clear
[Repeated 1 time(s)]
> select #1/D:275
12 atoms, 12 bonds, 1 residue, 1 model selected
> select up
88 atoms, 91 bonds, 10 residues, 1 model selected
> select down
12 atoms, 12 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1/D:293
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1/D:294@CG
1 atom, 1 residue, 1 model selected
> hide sel atoms
[Repeated 1 time(s)]
> select #1/D:302
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/D:294@OD1
1 atom, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel atoms
> select clear
> select #1/D:368
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1/D:470@CA
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select #1/D:469@CA
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
12 atoms, 12 bonds, 1 residue, 1 model selected
> hide sel atoms
> select #1/D:118
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> select clear
> select #2/D:119
9 atoms, 8 bonds, 1 residue, 1 model selected
> show sel atoms
> select #2/D:228
9 atoms, 8 bonds, 1 residue, 1 model selected
> show sel atoms
> select #2/D:151
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1/D:344@CG
1 atom, 1 residue, 1 model selected
> select up
12 atoms, 12 bonds, 1 residue, 1 model selected
> hide sel atoms
> select clear
> select #1/D:324@CG
1 atom, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel atoms
> select #1/D:480@O5
1 atom, 1 residue, 1 model selected
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
14 atoms, 14 bonds, 1 residue, 1 model selected
> hide sel atoms
> select #1/D:146@CG
1 atom, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel atoms
> select #2/D:278
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #2/D:293
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #2/D:293
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #2/D:292
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #2/D:292-293
17 atoms, 16 bonds, 2 residues, 1 model selected
> select #2/D:294
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/D:294
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/D:293
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #2/D:293
11 atoms, 10 bonds, 1 residue, 1 model selected
> select clear
> hide #!6 models
> select #1/D:481@C5
1 atom, 1 residue, 1 model selected
> select up
34 atoms, 36 bonds, 1 residue, 1 model selected
> color sel forest green
> color sel byhetero
> show #!3 models
> hide #!3 models
> show #!6 models
> select clear
> lighting flat
> lighting full
> lighting soft
> ui mousemode right label
> label #1/D:275
> ui mousemode right "move label"
> ui mousemode right label
> label #2/D:277
[Repeated 1 time(s)]
> label #2/D:293
> label #2/D:368
> label #1/D:118
> label #1/D:119
> label #2/D:152
> label #2/D:156
> label #1/D:136
> ui mousemode right "move label"
> ui mousemode right label
> label #2/D:151
> label residues format "%a"
Expected a keyword
> ui tool show "Basic Actions"
> ui tool show "Render/Select by Attribute"
> label delete residues
[Repeated 1 time(s)]
> undo
[Repeated 2 time(s)]
> show #!6 models
> label delete residues
[Repeated 2 time(s)]
> ui mousemode right select
> select clear
> ui mousemode right label
[Repeated 3 time(s)]
> label #1-2,6 attribute label_one_letter_code
> undo
> ~label sel residues
> label delete residues
> ui mousemode right select
> select up
4 atoms, 2 bonds, 2 residues, 2 models selected
> select up
22 atoms, 20 bonds, 2 residues, 3 models selected
> label (#1#!2 & sel) attribute label_one_letter_code
> label (#!1-2 & sel) text "{0.name} {0.number}{0.insertion_code}"
> label (#!1-2 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> select clear
[Repeated 1 time(s)]
> ui mousemode right "move label"
> ui mousemode right label
> label delete residues
[Repeated 1 time(s)]
> ui mousemode right select
> save "C:/Users/hp/坚果云/科研/研二/TEXAS/建模/25.3.16 画图/25.3.16-5 275+21h vs
> wt+21h.cxs"
> ui mousemode right select
> select #1/D:246
7 atoms, 7 bonds, 1 residue, 1 model selected
> select add #1/D:248
15 atoms, 14 bonds, 2 residues, 1 model selected
> select add #2/D:247
21 atoms, 19 bonds, 3 residues, 2 models selected
> select up
77 atoms, 77 bonds, 12 residues, 3 models selected
> select add #2/D:245
81 atoms, 80 bonds, 13 residues, 3 models selected
> select add #2/D:251
86 atoms, 84 bonds, 14 residues, 3 models selected
> hide sel cartoons
> select #2/D:296
14 atoms, 15 bonds, 1 residue, 1 model selected
> select add #1/D:296
28 atoms, 30 bonds, 2 residues, 3 models selected
> select add #2/D:295
36 atoms, 37 bonds, 3 residues, 3 models selected
> select add #1/D:295
44 atoms, 44 bonds, 4 residues, 3 models selected
> select add #1/D:294
52 atoms, 51 bonds, 5 residues, 3 models selected
> select add #2/D:294
60 atoms, 58 bonds, 6 residues, 3 models selected
> hide sel atoms
> hide sel cartoons
> select up
4 atoms, 2 bonds, 2 residues, 2 models selected
> select up
22 atoms, 20 bonds, 2 residues, 3 models selected
> hide sel atoms
> select add #1/D:151@CB
23 atoms, 21 bonds, 3 residues, 3 models selected
> select up
28 atoms, 23 bonds, 5 residues, 3 models selected
> select up
47 atoms, 44 bonds, 5 residues, 3 models selected
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 2 models selected
> hide sel atoms
> select add #2/D:156@CZ
1 atom, 1 bond, 1 residue, 2 models selected
> select up
4 atoms, 2 bonds, 2 residues, 3 models selected
> select up
22 atoms, 20 bonds, 2 residues, 3 models selected
> hide sel atoms
> select up
4 atoms, 2 bonds, 2 residues, 2 models selected
> select up
22 atoms, 20 bonds, 2 residues, 3 models selected
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
11 atoms, 9 bonds, 2 residues, 2 models selected
> select up
18 atoms, 16 bonds, 2 residues, 3 models selected
> hide sel atoms
> select #1/D:119@CG
1 atom, 1 residue, 1 model selected
> select add #2/D:119@CG
2 atoms, 2 residues, 2 models selected
> select up
18 atoms, 16 bonds, 2 residues, 3 models selected
> select up
174 atoms, 176 bonds, 22 residues, 3 models selected
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
11 atoms, 10 bonds, 1 residue, 2 models selected
> select up
13 atoms, 11 bonds, 2 residues, 3 models selected
> select up
22 atoms, 20 bonds, 2 residues, 3 models selected
> hide sel atoms
> select #2/D:293@NE
1 atom, 1 residue, 1 model selected
> select add #1/D:293@NE
2 atoms, 2 residues, 3 models selected
> select up
22 atoms, 20 bonds, 2 residues, 3 models selected
> select up
172 atoms, 176 bonds, 20 residues, 3 models selected
> hide sel atoms
> select #2/D:293
11 atoms, 10 bonds, 1 residue, 1 model selected
> select add #1/D:293
22 atoms, 20 bonds, 2 residues, 3 models selected
> select add #2/D:297
32 atoms, 30 bonds, 3 residues, 3 models selected
> select add #1/D:297
42 atoms, 40 bonds, 4 residues, 3 models selected
> show sel cartoons
> select #2/D:293
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #2/D:293
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #2/D:293-297
51 atoms, 53 bonds, 5 residues, 1 model selected
> show sel cartoons
> ui tool show "Show Sequence Viewer"
> sequence chain #2/D
Alignment identifier is 2/D
> select #2/D:293
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #2/D:293-297
51 atoms, 53 bonds, 5 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> ui tool show "Show Sequence Viewer"
> sequence chain #1/D
Alignment identifier is 1/D
> select #1/D:293
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1/D:293-297
51 atoms, 53 bonds, 5 residues, 1 model selected
> show sel cartoons
> select clear
> view name 1_275Y
> ui mousemode right distance
> distance #2/D:481@C15 #1/D:481@C14
Distance between 25.3.14 wt 21h.pdb #2/D 21H 481 C15 and 25.3.14 275Y 21h.pdb
#1/D 21H 481 C14: 1.620Å
> distance #2/D:277@OE1 #1/D:277@OE2
Distance between 25.3.14 wt 21h.pdb #2/D GLU 277 OE1 and 25.3.14 275Y 21h.pdb
#1/D GLU 277 OE2: 2.026Å
> ui mousemode right "move label"
> ui mousemode right select
> select #1/D:277@CD
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 1 model selected
> label sel text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> ui mousemode right "move label"
> ui mousemode right label
> label #1/D:275
> ui mousemode right "move label"
> view 1_275Y
> ui mousemode right label
> label delete residues
> undo
> view 1_275Y
> ui mousemode right "move label"
> label height 0.5
[Repeated 1 time(s)]
> ui mousemode right select
> select clear
[Repeated 3 time(s)]
> color #4.1 black models
> hide #!4 models
> show #!4 models
> ui mousemode right select
> select #1/D:277@OE2
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 1 model selected
> label sel text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> ui mousemode right "move label"
> label height 0.5
[Repeated 1 time(s)]
> ui mousemode right select
No visible atoms selected
> select #1/D:275@CZ
1 atom, 1 residue, 1 model selected
> select up
12 atoms, 12 bonds, 1 residue, 1 model selected
> label sel text H275Y
Drag select of 2 residues
> ui mousemode right "move label"
> select clear
> label height 0.5
> hide #4.1 models
> show #4.1 models
> hide #1.1 models
> show #1.1 models
> ui mousemode right select
> select #2/D:277@CD
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 2 models selected
> label delete sel
> select #1/D:277@CD
1 atom, 1 residue, 1 model selected
> label delete sel
> select #1/D:277@CD
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
88 atoms, 91 bonds, 10 residues, 1 model selected
> select down
9 atoms, 8 bonds, 1 residue, 1 model selected
> view name 1_275Y
> hide #1.1 models
> show #1.1 models
> label sel text E277
> ui mousemode right label
> ui mousemode right "move label"
> label height 0.5
> select clear
> label height 0.5
> ui mousemode right select
> select #1/D:275@CG
1 atom, 1 residue, 1 model selected
> select up
12 atoms, 12 bonds, 1 residue, 1 model selected
> label height 0.5
> select #2/D:275@CG
1 atom, 1 residue, 1 model selected
> select up
10 atoms, 10 bonds, 1 residue, 1 model selected
> label height 0.5
> label delete sel
> select #1/D:275@CZ
1 atom, 1 residue, 1 model selected
> select up
12 atoms, 12 bonds, 1 residue, 1 model selected
> label delete sel
> label sel text H275Y height 0.5
> view
> view list
Named views: 1_275Y, 1_initial, 1_pocket, 2_initial, 3_initial, tert_1
> view 1_275Y
> ui mousemode right "move label"
> view 1_275Y
[Repeated 1 time(s)]
> save "C:/Users/hp/坚果云/科研/研二/TEXAS/建模/25.3.16 画图/25.3.16-5 275+21h vs
> wt+21h.cxs"
——— End of log from Sun Mar 16 18:21:34 2025 ———
opened ChimeraX session
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> select add #1
3063 atoms, 3147 bonds, 393 residues, 2 models selected
> select add #2
6124 atoms, 6302 bonds, 786 residues, 3 models selected
> select add #4
6124 atoms, 6302 bonds, 2 pseudobonds, 786 residues, 6 models selected
> select add #6
6124 atoms, 6302 bonds, 2 pseudobonds, 786 residues, 8 models selected
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> preset "overall look" "publication 2 (depth-cued)"
Using preset: Overall Look / Publication 2 (Depth-Cued)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes f
lighting depthCue t
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> select subtract #6
6124 atoms, 6302 bonds, 2 pseudobonds, 786 residues, 6 models selected
> select subtract #4.1
6124 atoms, 6302 bonds, 2 pseudobonds, 786 residues, 5 models selected
> select add #4
6124 atoms, 6302 bonds, 2 pseudobonds, 786 residues, 6 models selected
> select subtract #2
3063 atoms, 3147 bonds, 393 residues, 4 models selected
> select subtract #1
1 model selected
> select subtract #4.1
Nothing selected
> select add #1
3063 atoms, 3147 bonds, 393 residues, 2 models selected
> select subtract #1
Nothing selected
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hbonds sel reveal true
12 hydrogen bonds found
> color #2 #ff8ad8ff
> color #2 #ff85ffff
> color #2 #d783ffff
> color #2 #ff7e79ff
> color #2 #ff2600ff
> color #2 #ff9300ff
> color #2 #941751ff
> color #2 #531b93ff
> color #2 #942193ff
> color #2 #ff40ffff
> color #2 #ff2f92ff
> color #2 #ff8ad8ff
> color #2 #ff8ad858
> color #2 #ff8ad81c
> color #2 #ff8ad8ca
> color #2 #ff8ad88a
> color #2 #ff8ad89b
> color #2 #ff8ad89c
> color #2 #ff8ad8ff
> select : 152, 119, 368, 156, 136
102 atoms, 92 bonds, 10 residues, 2 models selected
> show (#!1-2 & sel) target ab
> label (#!1-2 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> ~label (#!1-2 & sel) residues
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> select : 152, 119, 368, 156, 136
102 atoms, 92 bonds, 10 residues, 2 models selected
> label (#!1 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> label height 0.2
> hide #!2 models
> label height 0.4
> label height 0.5
> show #!2 models
> save "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/edited/1 wt+21h vs
> h275y+21h .cxs"
——— End of log from Tue Mar 18 15:54:31 2025 ———
opened ChimeraX session
> open "/Users/gulhabib/Documents/CryoEM/2. N274+21h /selected for chimmera
> editing 21h+h275Y.pdb"
Chain information for selected for chimmera editing 21h+h275Y.pdb #5
---
Chain | Description
A | No description available
3 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Computing secondary structure
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> close #5
> select: 277, 275, 293
Unknown command: select: 277, 275, 293
> select : 277, 275, 293
62 atoms, 58 bonds, 1 pseudobond, 6 residues, 3 models selected
> show (#!1-2 & sel) target ab
> label (#!1-2 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> hide #!2 models
> show #!2 models
> hide #3 models
> show #3 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!1 models
> show #!1 models
> select : 277, 275, 293
62 atoms, 58 bonds, 1 pseudobond, 6 residues, 3 models selected
> ~label (#!1-2 & sel) residues
> label (#!1-2 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hbonds sel reveal true
12 hydrogen bonds found
> hbonds sel reveal true
12 hydrogen bonds found
> hide #!2 models
> hbonds sel & #!1 reveal true
6 hydrogen bonds found
> hbonds sel & #!1 reveal true
6 hydrogen bonds found
> show #!2 models
> hide #!1 models
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hbonds sel & #!2 reveal true
6 hydrogen bonds found
> show #!1 models
> select : 147-156
164 atoms, 166 bonds, 20 residues, 2 models selected
> show (#!1-2 & sel) target ab
> hbonds sel reveal true
38 hydrogen bonds found
> select : 136, 277, 275, 274
82 atoms, 80 bonds, 1 pseudobond, 8 residues, 3 models selected
> hbonds sel reveal true
25 hydrogen bonds found
> hide #!6 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> select : 136, 277, 275, 274, 225
104 atoms, 100 bonds, 7 pseudobonds, 10 residues, 4 models selected
> label (#!2 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> color (#!2 & sel) byhetero
> show #!6 models
> select : 136, 277, 275, 274, 225, 253
128 atoms, 124 bonds, 15 pseudobonds, 12 residues, 4 models selected
> label (#!2 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> save /Users/gulhabib/Desktop/image3.png supersample 3
> show #!1 models
> hide #!2 models
> select : 136, 277, 275, 274, 225, 253
128 atoms, 124 bonds, 15 pseudobonds, 12 residues, 4 models selected
> label (#!1 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> save /Users/gulhabib/Desktop/image4.png supersample 3
> select : 136, 277, 275, 274, 225, 253, 274
128 atoms, 124 bonds, 15 pseudobonds, 12 residues, 4 models selected
> show #!2 models
> select : 136, 277, 275, 274, 225, 253, 274
128 atoms, 124 bonds, 15 pseudobonds, 12 residues, 4 models selected
> show (#!1-2 & sel) target ab
> preset "initial styles" "original look"
Using preset: Initial Styles / Original Look
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> select : 136, 277, 275, 274, 225, 253, 274
128 atoms, 124 bonds, 15 pseudobonds, 12 residues, 4 models selected
> show (#!1-2 & sel) target ab
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> open "/Users/gulhabib/Documents/CryoEM/structure1/3clo H275Y+oseltamivr
> reference .pdb"
Chain information for 3clo H275Y+oseltamivr reference .pdb #5
---
Chain | Description
A | No description available
Computing secondary structure
> hide #!2 models
> color #5 #ff40ffff
> matchmaker #5 to #1
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 25.3.14 275Y 21h.pdb, chain D (#1) with 3clo H275Y+oseltamivr
reference .pdb, chain A (#5), sequence alignment score = 1977.9
RMSD between 381 pruned atom pairs is 0.459 angstroms; (across all 385 pairs:
0.711)
> hide #!6 models
> select : 275, 277, 274
97 atoms, 97 bonds, 1 pseudobond, 9 residues, 4 models selected
> show (#!1,5 & sel) target ab
> label (#!1,5 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> hbonds sel & #!1,5 reveal true
35 hydrogen bonds found
> color #5 #9437ffff
> color #5 #00fdffff
> color #5 #00fa92ff
> color #5 #0096ffff
> color #5 #ff40ffff
> color #5 #ff85ffff
> open "/Users/gulhabib/Documents/CryoEM/3ckz n1+zanamivir H274Y .pdb"
3ckz n1+zanamivir H274Y .pdb title:
N1 neuraminidase H274Y + zanamivir [more info...]
Chain information for 3ckz n1+zanamivir H274Y .pdb #7
---
Chain | Description | UniProt
A | neuraminidase | Q6DPL2_9INFA 83-468
Non-standard residues in 3ckz n1+zanamivir H274Y .pdb #7
---
CA — calcium ion
ZMR — zanamivir (4-guanidino-2-deoxy-2,3-dehydro-N-acetyl-neuraminicacid;
4-guanidino-NEU5AC2EN; modified sialic acid)
> matchmaker #7 to #1
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 25.3.14 275Y 21h.pdb, chain D (#1) with 3ckz n1+zanamivir H274Y
.pdb, chain A (#7), sequence alignment score = 1984.5
RMSD between 381 pruned atom pairs is 0.486 angstroms; (across all 385 pairs:
0.738)
> select : 275, 277, 274
130 atoms, 130 bonds, 2 pseudobonds, 12 residues, 6 models selected
> show (#!1,5,7 & sel) target ab
> label (#!1,5,7 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> color #7 #73fa79ff
> color #7 #73fcd6ff
> color #7 #73fa79ff
> hbonds sel & #!1,5,7 reveal true
91 hydrogen bonds found
> color #7 #5e5e5eff
> color #5 #ff40ffff
> color #7 #009193ff
> color #7 #ff7e79ff
> color #7 #d4fb79ff
> select add #7
3272 atoms, 3175 bonds, 19 pseudobonds, 583 residues, 9 models selected
> select add #5
6224 atoms, 6208 bonds, 28 pseudobonds, 967 residues, 11 models selected
> select add #1
9254 atoms, 9322 bonds, 32 pseudobonds, 1357 residues, 12 models selected
> cartoon (#!1,5,7 & sel)
> preset "initial styles" "original look"
Using preset: Initial Styles / Original Look
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> lighting simple
> lighting full
> set bgColor black
> set bgColor transparent
> set bgColor white
> set bgColor #ffffff00
> view sel
> preset "initial styles" "original look"
Using preset: Initial Styles / Original Look
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> select subtract #1
6191 atoms, 6175 bonds, 27 pseudobonds, 964 residues, 9 models selected
> select subtract #5
3206 atoms, 3109 bonds, 18 pseudobonds, 577 residues, 6 models selected
> select subtract #7
31 atoms, 31 bonds, 3 residues, 2 models selected
> color #7 #0096ffff
> select : 275, 277, 274, 225
166 atoms, 162 bonds, 10 pseudobonds, 16 residues, 6 models selected
> select : 275, 277, 274, 225, 151, 152, 118, 119
322 atoms, 310 bonds, 10 pseudobonds, 32 residues, 6 models selected
> select : 275, 277, 274, 225, 21h, g39, zmr
277 atoms, 277 bonds, 16 pseudobonds, 20 residues, 6 models selected
> hbonds sel & #!1,5,7 reveal true
256 hydrogen bonds found
> color #7 #fffc79ff
> color #5 #ff7e79ff
> color #5 #ff40ffff
> color #1 #009193ff
> hide #!1 models
> hide #!4 models
> hide #4.1 models
> hide #3 models
> select : 275, 277, 274, 225, 21h, g39, zmr
277 atoms, 277 bonds, 20 pseudobonds, 20 residues, 6 models selected
> hbonds sel & #!5,7 reveal true
190 hydrogen bonds found
> show #3 models
> color #7 #ffd479ff
> color #5 #9437ffff
> color #5 #ff40ffff
> hide #!5 models
> hide #!7 models
> show #!5 models
> hide #!5 models
> show #!1 models
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hbonds sel & #!1 reveal true
20 hydrogen bonds found
> hbonds sel & #!1 reveal true
20 hydrogen bonds found
> show #!5 models
> select : 21h, g39, zmr
111 atoms, 115 bonds, 1 pseudobond, 4 residues, 5 models selected
> hbonds sel & #!1,5 reveal true
60 hydrogen bonds found
> color #5 #d783ffff
> color #5 #ff40ffff
> hide #!5 models
> show #!5 models
> show #!7 models
> color #7 #ff9300ff
> color #7 #fffb00ff
> select : 21h, g39, zmr
111 atoms, 115 bonds, 1 pseudobond, 4 residues, 5 models selected
> hbonds sel & #!1,5,7 reveal true
117 hydrogen bonds found
> hbonds sel & #!1,5,7 reveal true
117 hydrogen bonds found
> hbonds sel & #!1,5,7 reveal true
117 hydrogen bonds found
> color #7 #73fcd6ff
> color #7 #fffb00ff
> color #7 #fffc79ff
> color #5 #9437ffff
> color #5 #ff40ffff
> color #1 #0096ffff
> show #!2 models
> hide #!5 models
> hide #!7 models
> select : 21h, g39, zmr
111 atoms, 115 bonds, 1 pseudobond, 4 residues, 5 models selected
> hbonds sel & #!1-2 reveal true
33 hydrogen bonds found
> hbonds sel & #!1-2 reveal true
33 hydrogen bonds found
> hbonds sel & #!1-2 reveal true
33 hydrogen bonds found
> hbonds sel & #!1-2 reveal true
33 hydrogen bonds found
> color #2 #929292ff
> select clear
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hide #!1 models
> ui mousemode right select
> select clear
[Repeated 1 time(s)]
> select #2/D:481@O3
1 atom, 1 residue, 1 model selected
> select clear
> select #2/D:481@O3
1 atom, 1 residue, 1 model selected
> select clear
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> label (#!2 & sel) atoms attribute name
> select : O3, C11, O2
Nothing selected
> save /Users/gulhabib/Desktop/wt+21h.pdb
> open "/Users/gulhabib/Documents/CryoEM/3. Wt N1 plus 21h/6wt n1 fitting
> z-flip map Reuse in coot-0.pdb"
Chain information for 6wt n1 fitting z-flip map Reuse in coot-0.pdb #8
---
Chain | Description
A | No description available
3 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Computing secondary structure
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> ~label (#!2 & sel) atoms
> select # 8
3051 atoms, 3133 bonds, 1 pseudobond, 391 residues, 2 models selected
> select 151-156
Expected an objects specifier or a keyword
> select #8 151-156
Expected a keyword
> select : #8 151-156
Expected an objects specifier or a keyword
> select :151-156
271 atoms, 276 bonds, 30 residues, 5 models selected
> select #8 :151-156
55 atoms, 56 bonds, 6 residues, 1 model selected
> matchmaker #8 to #2
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 25.3.14 wt 21h.pdb, chain D (#2) with 6wt n1 fitting z-flip map
Reuse in coot-0.pdb, chain A (#8), sequence alignment score = 1960.5
RMSD between 387 pruned atom pairs is 0.536 angstroms; (across all 387 pairs:
0.536)
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hbonds sel & #!2 reveal true
15 hydrogen bonds found
> hbonds sel & #!2 reveal true
15 hydrogen bonds found
> hbonds sel & #!2 reveal true
15 hydrogen bonds found
> show #!1 models
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hbonds sel reveal true
38 hydrogen bonds found
> hide #!8 models
> show #!5 models
> select : 21h, g39
88 atoms, 92 bonds, 1 pseudobond, 3 residues, 4 models selected
> hbonds sel reveal true
85 hydrogen bonds found
> hbonds sel reveal true
85 hydrogen bonds found
> color #5 #8efa00ff
> color #5 #ff40ffff
> hide #!1 models
> hide #!2 models
> show #!1 models
> show #!2 models
> hide #!1 models
> hide #!2 models
> open "/Users/gulhabib/Documents/CryoEM/structure1/Oseltamivir reference
> pdb.pdb"
Chain information for Oseltamivir reference pdb.pdb #9
---
Chain | Description
H | No description available
Computing secondary structure
> matchmaker #9 to #5
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 3clo H275Y+oseltamivr reference .pdb, chain A (#5) with Oseltamivir
reference pdb.pdb, chain H (#9), sequence alignment score = 2021.8
RMSD between 385 pruned atom pairs is 0.267 angstroms; (across all 385 pairs:
0.267)
> select : g39
40 atoms, 40 bonds, 2 residues, 2 models selected
> hbonds sel reveal true
105 hydrogen bonds found
> hbonds sel reveal true
105 hydrogen bonds found
> hbonds sel reveal true
105 hydrogen bonds found
> color #5 #00fdffff
> color #5 #ff40ffff
> color #9 #76d6ffff
> color #9 #7a81ffff
> select : 274, 275, 276, 277
252 atoms, 260 bonds, 1 pseudobond, 24 residues, 7 models selected
> show (#9#!5 & sel) target ab
> hide #9 models
> show #9 models
> hide #!5 models
> show #!5 models
> hide #9 models
> show #9 models
> hide #!5 models
> show #!1 models
> show #!2 models
> hide #3 models
> hide #9 models
> show #3 models
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hbonds sel reveal true
41 hydrogen bonds found
> color #2 #73fa79ff
> hide #!1 models
> hide #!2 models
> show #!1 models
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hbonds sel & #!1 reveal true
25 hydrogen bonds found
> hbonds sel & #!1 reveal true
25 hydrogen bonds found
> show #!2 models
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hbonds sel reveal true
41 hydrogen bonds found
> show #9 models
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> hbonds sel reveal true
41 hydrogen bonds found
> hbonds sel reveal true
41 hydrogen bonds found
> hide #3 models
> hide #!2 models
> hide #!1 models
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> show #!8 models
> hide #9 models
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> select ::name="LIG"
63 atoms, 65 bonds, 1 residue, 1 model selected
> hbonds sel reveal true
32 hydrogen bonds found
> hbonds sel reveal true
32 hydrogen bonds found
> show #3 models
> show #9 models
> show #!5 models
> hide #!8 models
> select ::name="G39"
40 atoms, 40 bonds, 2 residues, 2 models selected
> hide #!5 models
> show #!5 models
> hbonds sel reveal true
105 hydrogen bonds found
> hide #9 models
> hide #!5 models
> show #!2 models
> show #!1 models
> hide #3 models
> select add #2
3101 atoms, 3195 bonds, 395 residues, 4 models selected
> select add #1
6164 atoms, 6342 bonds, 788 residues, 7 models selected
> hide (#!1-2 & sel) target a
> cartoon (#!1-2 & sel)
> select : 343, 344, 334, 335, 388, 262, 257, 294, 298
325 atoms, 285 bonds, 47 residues, 6 models selected
> show (#!1-2 & sel) target ab
> label (#!1-2 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> cartoon hide (#!1-2 & sel)
> select : 274-300
1312 atoms, 1354 bonds, 1 pseudobond, 162 residues, 7 models selected
> show (#!1-2 & sel) target ab
> cartoon hide (#!1-2 & sel)
> select add #2
4155 atoms, 4282 bonds, 1 pseudobond, 528 residues, 9 models selected
> select add #1
6998 atoms, 7202 bonds, 1 pseudobond, 894 residues, 10 models selected
> preset "initial styles" sticks
Using preset: Initial Styles / Sticks
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> cartoon (#!1-2 & sel)
> hide (#!1-2 & sel) target a
> show #9 models
> select add #9
9763 atoms, 10044 bonds, 9 pseudobonds, 1253 residues, 11 models selected
> hide (#9#!1-2 & sel) target a
> cartoon (#9#!1-2 & sel)
> show #!5 models
> hide (#9#!1-2,5 & sel) target a
> cartoon (#9#!1-2,5 & sel)
> hide (#9#!1-2,5 & sel) target a
> select add #5
12529 atoms, 12885 bonds, 21 pseudobonds, 1613 residues, 13 models selected
> hide (#9#!1-2,5 & sel) target a
> cartoon hide (#9#!1-2,5 & sel)
> cartoon (#9#!1-2,5 & sel)
> save "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/edited/All 21h and
> Oseltamivir reference (wt).cxs"
——— End of log from Thu Mar 20 11:56:54 2025 ———
opened ChimeraX session
> open "/Users/gulhabib/Documents/CryoEM/structure1/3. H275Y apo.pdb"
Chain information for 3. H275Y apo.pdb #10
---
Chain | Description
D | No description available
3 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Computing secondary structure
> matchmaker #10 to #1
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 25.3.14 275Y 21h.pdb, chain D (#1) with 3. H275Y apo.pdb, chain D
(#10), sequence alignment score = 2032.9
RMSD between 387 pruned atom pairs is 0.312 angstroms; (across all 387 pairs:
0.312)
> hide #9 models
> hide #!5 models
> select : 344
62 atoms, 58 bonds, 7 residues, 7 models selected
> show (#10#!1-2 & sel) target ab
> save "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/edited/All 21h and
> Oseltamivir reference (wt).cxs"
——— End of log from Thu Mar 20 14:14:14 2025 ———
opened ChimeraX session
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> show (#!1-2 & sel) target ab
> save "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/edited/All 21h and
> Oseltamivir reference (wt).cxs"
——— End of log from Thu Mar 20 16:03:03 2025 ———
opened ChimeraX session
> select ::name="21H"
68 atoms, 72 bonds, 1 pseudobond, 2 residues, 3 models selected
> ui tool show "Cage Builder"
> ui tool show "Crystal Contacts"
> ui tool show "Download DICOM"
> ui tool show "DICOM Browser"
> ui tool show "Find Cavities"
> kvfinder #1
23 cavities found for 25.3.14 275Y 21h.pdb #1
25.3.14 275Y 21h.pdb Cavities
---
ID | | Volume | Area | Points
1.2.14 | | 559.44 | 439.97 | 2590
1.2.7 | | 151.85 | 143.35 | 703
1.2.11 | | 108 | 149.87 | 500
1.2.2 | | 87.26 | 125.45 | 404
1.2.10 | | 71.06 | 104.04 | 329
1.2.4 | | 56.38 | 75.88 | 261
1.2.20 | | 51.41 | 58.92 | 238
1.2.19 | | 46.66 | 69.05 | 216
1.2.12 | | 43.2 | 59.01 | 200
1.2.16 | | 39.1 | 60.87 | 181
1.2.22 | | 20.52 | 35.89 | 95
1.2.3 | | 19.22 | 35.47 | 89
1.2.5 | | 17.71 | 26.72 | 82
1.2.17 | | 16.85 | 32.3 | 78
1.2.18 | | 16.85 | 32.3 | 78
1.2.13 | | 15.98 | 25.9 | 74
1.2.6 | | 12.31 | 29.54 | 57
1.2.15 | | 12.31 | 29.54 | 57
1.2.1 | | 10.8 | 20.7 | 50
1.2.21 | | 8.42 | 14.48 | 39
1.2.23 | | 7.34 | 14.56 | 34
1.2.9 | | 7.13 | 14.78 | 33
1.2.8 | | 6.48 | 11.09 | 30
Populating font family aliases took 108 ms. Replace uses of missing font
family "Times" with one that exists to avoid this cost.
> view #1.2.14 @< 3.0
> zoom 0.75
moved plane near -36.35364076575426 [-0.10285594 0.32396999 0.94045948]
moved plane far -36.35364076575426 [-0.10285594 0.32396999 0.94045948]
> surface #1.2
> transparency #1.2 50
> ~surface #1.2
> surface #1.2.14
"Nearby" atom/residue distance not valid
> select clear
> ~select #!1.2.14
Nothing selected
> select #!1.2.14
2590 atoms, 1 residue, 1 model selected
> ~select #!1.2.14
1 model selected
> select #!1.2.14
2590 atoms, 1 residue, 1 model selected
> ~select #!1.2.14
1 model selected
> view #1
> view #!1.2.14 @< 3.0
> zoom 0.75
moved plane near -35.95893216622736 [0.00831787 0.44848518 0.89375152]
moved plane far -35.95893216622736 [0.00831787 0.44848518 0.89375152]
> ~surface #1.2
[Repeated 1 time(s)]
> surface #!1.2.14
> select #!1.2.14
2590 atoms, 1 residue, 1 model selected
Error processing trigger "setting changed":
"Nearby" atom/residue distance not valid
[Repeated 1 time(s)]
> view #!1.2.7 @< 3.0
> zoom 0.75
moved plane near -23.122196482218655 [0.00831787 0.44848518 0.89375152]
moved plane far -23.122196482218655 [0.00831787 0.44848518 0.89375152]
> ~surface #1.2
> surface #!1.2.7
"Nearby" atom/residue distance not valid
> view #1
> ~surface #1.2
> ~select #!1.2.7
2590 atoms, 1 residue, 2 models selected
Error processing trigger "setting changed":
"Nearby" atom/residue distance not valid
[Repeated 1 time(s)]
> ~surface #1.2
> view #!1.2.14 @< 3.0
> zoom 0.75
moved plane near -35.95893216622736 [0.00831787 0.44848518 0.89375152]
moved plane far -35.95893216622736 [0.00831787 0.44848518 0.89375152]
> ~surface #1.2
> surface #!1.2.14
> select #!1.2.14
2590 atoms, 1 residue, 1 model selected
Error processing trigger "setting changed":
"Nearby" atom/residue distance not valid
[Repeated 1 time(s)]
> hide #10 models
> hide surfaces
> hide cavity
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> hide cavities
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> hide cavity 14
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> hide cavity 14 #1.2.14
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> surface hidePatches (#!1.2.14 & sel)
> ui tool show "Find Cavities"
> kvfinder #1
23 cavities found for 25.3.14 275Y 21h.pdb #!1
25.3.14 275Y 21h.pdb Cavities
---
ID | | Volume | Area | Points
1.3.14 | | 559.44 | 439.97 | 2590
1.3.7 | | 151.85 | 143.35 | 703
1.3.11 | | 108 | 149.87 | 500
1.3.2 | | 87.26 | 125.45 | 404
1.3.10 | | 71.06 | 104.04 | 329
1.3.4 | | 56.38 | 75.88 | 261
1.3.20 | | 51.41 | 58.92 | 238
1.3.19 | | 46.66 | 69.05 | 216
1.3.12 | | 43.2 | 59.01 | 200
1.3.16 | | 39.1 | 60.87 | 181
1.3.22 | | 20.52 | 35.89 | 95
1.3.3 | | 19.22 | 35.47 | 89
1.3.5 | | 17.71 | 26.72 | 82
1.3.17 | | 16.85 | 32.3 | 78
1.3.18 | | 16.85 | 32.3 | 78
1.3.13 | | 15.98 | 25.9 | 74
1.3.6 | | 12.31 | 29.54 | 57
1.3.15 | | 12.31 | 29.54 | 57
1.3.1 | | 10.8 | 20.7 | 50
1.3.21 | | 8.42 | 14.48 | 39
1.3.23 | | 7.34 | 14.56 | 34
1.3.9 | | 7.13 | 14.78 | 33
1.3.8 | | 6.48 | 11.09 | 30
> view #1.3.14 @< 3.0
> zoom 0.75
moved plane near -41.61070294064325 [-0.36948623 0.69372777 0.61824075]
moved plane far -41.61070294064325 [-0.36948623 0.69372777 0.61824075]
> surface #1.3
> transparency #1.3 50
> ~surface #1.3
> surface #1.3.14
"Nearby" atom/residue distance not valid
> ui tool show "Find Cavities"
> kvfinder #1
23 cavities found for 25.3.14 275Y 21h.pdb #!1
25.3.14 275Y 21h.pdb Cavities
---
ID | | Volume | Area | Points
1.4.14 | | 559.44 | 439.97 | 2590
1.4.7 | | 151.85 | 143.35 | 703
1.4.11 | | 108 | 149.87 | 500
1.4.2 | | 87.26 | 125.45 | 404
1.4.10 | | 71.06 | 104.04 | 329
1.4.4 | | 56.38 | 75.88 | 261
1.4.20 | | 51.41 | 58.92 | 238
1.4.19 | | 46.66 | 69.05 | 216
1.4.12 | | 43.2 | 59.01 | 200
1.4.16 | | 39.1 | 60.87 | 181
1.4.22 | | 20.52 | 35.89 | 95
1.4.3 | | 19.22 | 35.47 | 89
1.4.5 | | 17.71 | 26.72 | 82
1.4.17 | | 16.85 | 32.3 | 78
1.4.18 | | 16.85 | 32.3 | 78
1.4.13 | | 15.98 | 25.9 | 74
1.4.6 | | 12.31 | 29.54 | 57
1.4.15 | | 12.31 | 29.54 | 57
1.4.1 | | 10.8 | 20.7 | 50
1.4.21 | | 8.42 | 14.48 | 39
1.4.23 | | 7.34 | 14.56 | 34
1.4.9 | | 7.13 | 14.78 | 33
1.4.8 | | 6.48 | 11.09 | 30
> view #1.4.7 @< 3.0
> zoom 0.75
moved plane near -26.589108837249864 [-0.36948623 0.69372777 0.61824075]
moved plane far -26.589108837249864 [-0.36948623 0.69372777 0.61824075]
> surface #1.4
> transparency #1.4 50
> ~surface #1.4
> surface #1.4.7
"Nearby" atom/residue distance not valid
Error processing trigger "setting changed":
"Nearby" atom/residue distance not valid
[Repeated 11 time(s)]
> view #!1.4.7,11 @< 3.0
> zoom 0.75
moved plane near -44.784490993367626 [-0.36948623 0.69372777 0.61824075]
moved plane far -44.784490993367626 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7,11
> select #!1.4.7,11
1203 atoms, 2 residues, 2 models selected
> view #!1.4.2,7,11 @< 3.0
> zoom 0.75
moved plane near -54.97812148067638 [-0.36948623 0.69372777 0.61824075]
moved plane far -54.97812148067638 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,7,11
> select #!1.4.2,7,11
1607 atoms, 3 residues, 3 models selected
> view #!1.4.2,7,10-11 @< 3.0
> zoom 0.75
moved plane near -58.95585885504036 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.95585885504036 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,7,10-11
> select #!1.4.2,7,10-11
1936 atoms, 4 residues, 4 models selected
> view #!1.4.2,4,7,10-11 @< 3.0
> zoom 0.75
moved plane near -58.95585885504036 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.95585885504036 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4,7,10-11
> select #!1.4.2,4,7,10-11
2197 atoms, 5 residues, 5 models selected
> view #!1.4.2,4,7,10-11,20 @< 3.0
> zoom 0.75
moved plane near -66.05744381045027 [-0.36948623 0.69372777 0.61824075]
moved plane far -66.05744381045027 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4,7,10-11,20
> select #!1.4.2,4,7,10-11,20
2435 atoms, 6 residues, 6 models selected
> view #!1.4.2,4,7,10-11,19-20 @< 3.0
> zoom 0.75
moved plane near -67.806967071999 [-0.36948623 0.69372777 0.61824075]
moved plane far -67.806967071999 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4,7,10-11,19-20
> select #!1.4.2,4,7,10-11,19-20
2651 atoms, 7 residues, 7 models selected
> view #!1.4.2,4,7,10-12,19-20 @< 3.0
> zoom 0.75
moved plane near -68.14409395312356 [-0.36948623 0.69372777 0.61824075]
moved plane far -68.14409395312356 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4,7,10-12,19-20
> select #!1.4.2,4,7,10-12,19-20
2851 atoms, 8 residues, 8 models selected
> view #!1.4.2,4,7,10-12,16,19-20 @< 3.0
> zoom 0.75
moved plane near -68.48875791151085 [-0.36948623 0.69372777 0.61824075]
moved plane far -68.48875791151085 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4,7,10-12,16,19-20
> select #!1.4.2,4,7,10-12,16,19-20
3032 atoms, 9 residues, 9 models selected
> view #!1.4.2,4,7,10-12,16,19-20,22 @< 3.0
> zoom 0.75
moved plane near -70.8250400608607 [-0.36948623 0.69372777 0.61824075]
moved plane far -70.8250400608607 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4,7,10-12,16,19-20,22
> select #!1.4.2,4,7,10-12,16,19-20,22
3127 atoms, 10 residues, 10 models selected
> view #!1.4.2-4,7,10-12,16,19-20,22 @< 3.0
> zoom 0.75
moved plane near -70.8250400608607 [-0.36948623 0.69372777 0.61824075]
moved plane far -70.8250400608607 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-4,7,10-12,16,19-20,22
> select #!1.4.2-4,7,10-12,16,19-20,22
3216 atoms, 11 residues, 11 models selected
> view #!1.4.2-5,7,10-12,16,19-20,22 @< 3.0
> zoom 0.75
moved plane near -71.9084392890733 [-0.36948623 0.69372777 0.61824075]
moved plane far -71.9084392890733 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7,10-12,16,19-20,22
> select #!1.4.2-5,7,10-12,16,19-20,22
3298 atoms, 12 residues, 12 models selected
> view #!1.4.2-5,7,10-12,16,18-20,22 @< 3.0
> zoom 0.75
moved plane near -71.9084392890733 [-0.36948623 0.69372777 0.61824075]
moved plane far -71.9084392890733 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7,10-12,16,18-20,22
> select #!1.4.2-5,7,10-12,16,18-20,22
3376 atoms, 13 residues, 13 models selected
> view #!1.4.2-5,7,10-12,16-20,22 @< 3.0
> zoom 0.75
moved plane near -71.9084392890733 [-0.36948623 0.69372777 0.61824075]
moved plane far -71.9084392890733 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7,10-12,16-20,22
> select #!1.4.2-5,7,10-12,16-20,22
3454 atoms, 14 residues, 14 models selected
> view #!1.4.2-5,7,10-13,16-20,22 @< 3.0
> zoom 0.75
moved plane near -71.9084392890733 [-0.36948623 0.69372777 0.61824075]
moved plane far -71.9084392890733 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7,10-13,16-20,22
> select #!1.4.2-5,7,10-13,16-20,22
3528 atoms, 15 residues, 15 models selected
> view #!1.4.2-5,7,10-13,15-20,22 @< 3.0
> zoom 0.75
moved plane near -72.13548970026353 [-0.36948623 0.69372777 0.61824075]
moved plane far -72.13548970026353 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7,10-13,15-20,22
> select #!1.4.2-5,7,10-13,15-20,22
3585 atoms, 16 residues, 16 models selected
> view #!1.4.2-7,10-13,15-20,22 @< 3.0
> zoom 0.75
moved plane near -72.13548970026353 [-0.36948623 0.69372777 0.61824075]
moved plane far -72.13548970026353 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-7,10-13,15-20,22
> select #!1.4.2-7,10-13,15-20,22
3642 atoms, 17 residues, 17 models selected
> view #!1.4.1-7,10-13,15-20,22 @< 3.0
> zoom 0.75
moved plane near -77.63871688108838 [-0.36948623 0.69372777 0.61824075]
moved plane far -77.63871688108838 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.1-7,10-13,15-20,22
> select #!1.4.1-7,10-13,15-20,22
3692 atoms, 18 residues, 18 models selected
> view #!1.4.1-7,10-13,15-22 @< 3.0
> zoom 0.75
moved plane near -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
moved plane far -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.1-7,10-13,15-22
> select #!1.4.1-7,10-13,15-22
3731 atoms, 19 residues, 19 models selected
> view #!1.4.1-7,10-13,15-23 @< 3.0
> zoom 0.75
moved plane near -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
moved plane far -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.1-7,10-13,15-23
> select #!1.4.1-7,10-13,15-23
3765 atoms, 20 residues, 20 models selected
> view #!1.4.1-7,9-13,15-23 @< 3.0
> zoom 0.75
moved plane near -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
moved plane far -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.1-7,9-13,15-23
> select #!1.4.1-7,9-13,15-23
3798 atoms, 21 residues, 21 models selected
> view #!1.4.1-13,15-23 @< 3.0
> zoom 0.75
moved plane near -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
moved plane far -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.1-13,15-23
> select #!1.4.1-13,15-23
3828 atoms, 22 residues, 22 models selected
> view #!1.4.1-7,9-13,15-23 @< 3.0
> zoom 0.75
moved plane near -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
moved plane far -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.1-7,9-13,15-23
> select #!1.4.1-7,9-13,15-23
3798 atoms, 21 residues, 21 models selected
> view #!1.4.1-13,15-23 @< 3.0
> zoom 0.75
moved plane near -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
moved plane far -77.63873208774328 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.1-13,15-23
> select #!1.4.1-13,15-23
3828 atoms, 22 residues, 22 models selected
> surface hidePatches (#!1.4.1-13,15-23 & sel)
> cartoon hide (#!1.4.1-13,15-23 & sel)
> transparency (#!1.4.1-13,15-23 & sel) 100
> delete atoms (#!1.4.1-13,15-23 & sel)
> view #!1.4.2-13,15-23 @< 3.0
> zoom 0.75
moved plane near -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-13,15-23
> select #!1.4.2-13,15-23
3778 atoms, 21 residues, 21 models selected
> view #!1.4.5 @< 3.0
> zoom 0.75
moved plane near -16.38038113541874 [-0.36948623 0.69372777 0.61824075]
moved plane far -16.38038113541874 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.5
> select #!1.4.5
82 atoms, 1 residue, 1 model selected
> view #!1.4.2,5 @< 3.0
> zoom 0.75
moved plane near -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
moved plane far -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,5
> select #!1.4.2,5
486 atoms, 2 residues, 2 models selected
> view #!1.4.2,4-5 @< 3.0
> zoom 0.75
moved plane near -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
moved plane far -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5
> select #!1.4.2,4-5
747 atoms, 3 residues, 3 models selected
> view #!1.4.2,4-5,12 @< 3.0
> zoom 0.75
moved plane near -43.154918912080575 [-0.36948623 0.69372777 0.61824075]
moved plane far -43.154918912080575 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,12
> select #!1.4.2,4-5,12
947 atoms, 4 residues, 4 models selected
> view #!1.4.2,4-5,12,20 @< 3.0
> zoom 0.75
moved plane near -55.8289843108598 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.8289843108598 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,12,20
> select #!1.4.2,4-5,12,20
1185 atoms, 5 residues, 5 models selected
> view #!1.4.2,4-5,12,20,23 @< 3.0
> zoom 0.75
moved plane near -56.614599460854436 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.614599460854436 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,12,20,23
> select #!1.4.2,4-5,12,20,23
1219 atoms, 6 residues, 6 models selected
> view #!1.4.2,4-5,12,15,20,23 @< 3.0
> zoom 0.75
moved plane near -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
moved plane far -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,12,15,20,23
> select #!1.4.2,4-5,12,15,20,23
1276 atoms, 7 residues, 7 models selected
> view #!1.4.2,4-5,11-12,15,20,23 @< 3.0
> zoom 0.75
moved plane near -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
moved plane far -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,11-12,15,20,23
> select #!1.4.2,4-5,11-12,15,20,23
1776 atoms, 8 residues, 8 models selected
> view #!1.4.2,4-5,11-12,15,19-20,23 @< 3.0
> zoom 0.75
moved plane near -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
moved plane far -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,11-12,15,19-20,23
> select #!1.4.2,4-5,11-12,15,19-20,23
1992 atoms, 9 residues, 9 models selected
> view #!1.4.2,4-5,11-12,15,19-20,22-23 @< 3.0
> zoom 0.75
moved plane near -62.50503344035409 [-0.36948623 0.69372777 0.61824075]
moved plane far -62.50503344035409 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,11-12,15,19-20,22-23
> select #!1.4.2,4-5,11-12,15,19-20,22-23
2087 atoms, 10 residues, 10 models selected
> view #!1.4.2,4-5,8,11-12,15,19-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8,11-12,15,19-20,22-23
> select #!1.4.2,4-5,8,11-12,15,19-20,22-23
2117 atoms, 11 residues, 11 models selected
> view #!1.4.2,4-5,8,10-12,15,19-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8,10-12,15,19-20,22-23
> select #!1.4.2,4-5,8,10-12,15,19-20,22-23
2446 atoms, 12 residues, 12 models selected
> view #!1.4.2,4-5,8-12,15,19-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-12,15,19-20,22-23
> select #!1.4.2,4-5,8-12,15,19-20,22-23
2479 atoms, 13 residues, 13 models selected
> view #!1.4.2,4-5,8-13,15,19-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-13,15,19-20,22-23
> select #!1.4.2,4-5,8-13,15,19-20,22-23
2553 atoms, 14 residues, 14 models selected
> view #!1.4.2,4-5,8-13,15-16,19-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-13,15-16,19-20,22-23
> select #!1.4.2,4-5,8-13,15-16,19-20,22-23
2734 atoms, 15 residues, 15 models selected
> view #!1.4.2,4-5,8-13,15-17,19-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-13,15-17,19-20,22-23
> select #!1.4.2,4-5,8-13,15-17,19-20,22-23
2812 atoms, 16 residues, 16 models selected
> view #!1.4.2,4-5,8-13,15-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-13,15-20,22-23
> select #!1.4.2,4-5,8-13,15-20,22-23
2890 atoms, 17 residues, 17 models selected
> view #!1.4.2-5,8-13,15-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,8-13,15-20,22-23
> select #!1.4.2-5,8-13,15-20,22-23
2979 atoms, 18 residues, 18 models selected
> view #!1.4.2-5,8-13,15-23 @< 3.0
> zoom 0.75
moved plane near -64.2146076891873 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.2146076891873 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,8-13,15-23
> select #!1.4.2-5,8-13,15-23
3018 atoms, 19 residues, 19 models selected
> view #!1.4.2-5,7-13,15-23 @< 3.0
> zoom 0.75
moved plane near -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-13,15-23
> select #!1.4.2-5,7-13,15-23
3721 atoms, 20 residues, 20 models selected
> view #!1.4.2-13,15-23 @< 3.0
> zoom 0.75
moved plane near -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-13,15-23
> select #!1.4.2-13,15-23
3778 atoms, 21 residues, 21 models selected
> view #!1.4.2-13,15-23 @< 3.0
> zoom 0.75
moved plane near -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-13,15-23
> select #!1.4.2-13,15-23
3778 atoms, 21 residues, 21 models selected
> view #!1.4.2-12,15-23 @< 3.0
> zoom 0.75
moved plane near -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-12,15-23
> select #!1.4.2-12,15-23
3704 atoms, 20 residues, 20 models selected
> view #!1.4.5 @< 3.0
> zoom 0.75
moved plane near -16.38038113541874 [-0.36948623 0.69372777 0.61824075]
moved plane far -16.38038113541874 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.5
> select #!1.4.5
82 atoms, 1 residue, 1 model selected
> view #!1.4.2,5 @< 3.0
> zoom 0.75
moved plane near -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
moved plane far -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,5
> select #!1.4.2,5
486 atoms, 2 residues, 2 models selected
> view #!1.4.2,4-5 @< 3.0
> zoom 0.75
moved plane near -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
moved plane far -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5
> select #!1.4.2,4-5
747 atoms, 3 residues, 3 models selected
> view #!1.4.2,4-5,12 @< 3.0
> zoom 0.75
moved plane near -43.154918912080575 [-0.36948623 0.69372777 0.61824075]
moved plane far -43.154918912080575 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,12
> select #!1.4.2,4-5,12
947 atoms, 4 residues, 4 models selected
> view #!1.4.2,4-5,12,20 @< 3.0
> zoom 0.75
moved plane near -55.8289843108598 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.8289843108598 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,12,20
> select #!1.4.2,4-5,12,20
1185 atoms, 5 residues, 5 models selected
> view #!1.4.2,4-5,12,20,23 @< 3.0
> zoom 0.75
moved plane near -56.614599460854436 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.614599460854436 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,12,20,23
> select #!1.4.2,4-5,12,20,23
1219 atoms, 6 residues, 6 models selected
> view #!1.4.2,4-5,12,15,20,23 @< 3.0
> zoom 0.75
moved plane near -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
moved plane far -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,12,15,20,23
> select #!1.4.2,4-5,12,15,20,23
1276 atoms, 7 residues, 7 models selected
> view #!1.4.2,4-5,11-12,15,20,23 @< 3.0
> zoom 0.75
moved plane near -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
moved plane far -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,11-12,15,20,23
> select #!1.4.2,4-5,11-12,15,20,23
1776 atoms, 8 residues, 8 models selected
> view #!1.4.2,4-5,11-12,15,19-20,23 @< 3.0
> zoom 0.75
moved plane near -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
moved plane far -60.92594157530124 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,11-12,15,19-20,23
> select #!1.4.2,4-5,11-12,15,19-20,23
1992 atoms, 9 residues, 9 models selected
> view #!1.4.2,4-5,11-12,15,19-20,22-23 @< 3.0
> zoom 0.75
moved plane near -62.50503344035409 [-0.36948623 0.69372777 0.61824075]
moved plane far -62.50503344035409 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,11-12,15,19-20,22-23
> select #!1.4.2,4-5,11-12,15,19-20,22-23
2087 atoms, 10 residues, 10 models selected
> view #!1.4.2,4-5,8,11-12,15,19-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8,11-12,15,19-20,22-23
> select #!1.4.2,4-5,8,11-12,15,19-20,22-23
2117 atoms, 11 residues, 11 models selected
> view #!1.4.2,4-5,8,10-12,15,19-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8,10-12,15,19-20,22-23
> select #!1.4.2,4-5,8,10-12,15,19-20,22-23
2446 atoms, 12 residues, 12 models selected
> view #!1.4.2,4-5,8-12,15,19-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-12,15,19-20,22-23
> select #!1.4.2,4-5,8-12,15,19-20,22-23
2479 atoms, 13 residues, 13 models selected
> view #!1.4.2,4-5,8-12,15-16,19-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-12,15-16,19-20,22-23
> select #!1.4.2,4-5,8-12,15-16,19-20,22-23
2660 atoms, 14 residues, 14 models selected
> view #!1.4.2,4-5,8-12,15-17,19-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-12,15-17,19-20,22-23
> select #!1.4.2,4-5,8-12,15-17,19-20,22-23
2738 atoms, 15 residues, 15 models selected
> view #!1.4.2,4-5,8-12,15-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-12,15-20,22-23
> select #!1.4.2,4-5,8-12,15-20,22-23
2816 atoms, 16 residues, 16 models selected
> view #!1.4.2-5,8-12,15-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.21459389452924 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,8-12,15-20,22-23
> select #!1.4.2-5,8-12,15-20,22-23
2905 atoms, 17 residues, 17 models selected
> view #!1.4.2-5,8-12,15-23 @< 3.0
> zoom 0.75
moved plane near -64.2146076891873 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.2146076891873 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,8-12,15-23
> select #!1.4.2-5,8-12,15-23
2944 atoms, 18 residues, 18 models selected
> view #!1.4.2-5,7-12,15-23 @< 3.0
> zoom 0.75
moved plane near -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-12,15-23
> select #!1.4.2-5,7-12,15-23
3647 atoms, 19 residues, 19 models selected
> view #!1.4.2-12,15-23 @< 3.0
> zoom 0.75
moved plane near -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-12,15-23
> select #!1.4.2-12,15-23
3704 atoms, 20 residues, 20 models selected
> view #!1.4.2-12,15-23 @< 3.0
> zoom 0.75
moved plane near -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.60784797266214 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-12,15-23
> select #!1.4.2-12,15-23
3704 atoms, 20 residues, 20 models selected
> view #!1.4.2-12,16-23 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-12,16-23
> select #!1.4.2-12,16-23
3647 atoms, 19 residues, 19 models selected
> view #!1.4.5 @< 3.0
> zoom 0.75
moved plane near -16.38038113541874 [-0.36948623 0.69372777 0.61824075]
moved plane far -16.38038113541874 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.5
> select #!1.4.5
82 atoms, 1 residue, 1 model selected
> view #!1.4.2,5 @< 3.0
> zoom 0.75
moved plane near -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
moved plane far -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,5
> select #!1.4.2,5
486 atoms, 2 residues, 2 models selected
> view #!1.4.2,4-5 @< 3.0
> zoom 0.75
moved plane near -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
moved plane far -38.37125190518726 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5
> select #!1.4.2,4-5
747 atoms, 3 residues, 3 models selected
> view #!1.4.2,4-5,23 @< 3.0
> zoom 0.75
moved plane near -51.991232148105574 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.991232148105574 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,23
> select #!1.4.2,4-5,23
781 atoms, 4 residues, 4 models selected
> view #!1.4.2,4-5,12,23 @< 3.0
> zoom 0.75
moved plane near -52.81054574147939 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.81054574147939 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,12,23
> select #!1.4.2,4-5,12,23
981 atoms, 5 residues, 5 models selected
> view #!1.4.2,4-5,12,20,23 @< 3.0
> zoom 0.75
moved plane near -56.614599460854436 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.614599460854436 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,12,20,23
> select #!1.4.2,4-5,12,20,23
1219 atoms, 6 residues, 6 models selected
> view #!1.4.2,4-5,11-12,20,23 @< 3.0
> zoom 0.75
moved plane near -59.13219292434028 [-0.36948623 0.69372777 0.61824075]
moved plane far -59.13219292434028 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,11-12,20,23
> select #!1.4.2,4-5,11-12,20,23
1719 atoms, 7 residues, 7 models selected
> view #!1.4.2,4-5,11-12,19-20,23 @< 3.0
> zoom 0.75
moved plane near -60.71926945440231 [-0.36948623 0.69372777 0.61824075]
moved plane far -60.71926945440231 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,11-12,19-20,23
> select #!1.4.2,4-5,11-12,19-20,23
1935 atoms, 8 residues, 8 models selected
> view #!1.4.2,4-5,11-12,19-20,22-23 @< 3.0
> zoom 0.75
moved plane near -62.29907559860302 [-0.36948623 0.69372777 0.61824075]
moved plane far -62.29907559860302 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,11-12,19-20,22-23
> select #!1.4.2,4-5,11-12,19-20,22-23
2030 atoms, 9 residues, 9 models selected
> view #!1.4.2,4-5,8,11-12,19-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8,11-12,19-20,22-23
> select #!1.4.2,4-5,8,11-12,19-20,22-23
2060 atoms, 10 residues, 10 models selected
> view #!1.4.2,4-5,8,10-12,19-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8,10-12,19-20,22-23
> select #!1.4.2,4-5,8,10-12,19-20,22-23
2389 atoms, 11 residues, 11 models selected
> view #!1.4.2,4-5,8-12,19-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-12,19-20,22-23
> select #!1.4.2,4-5,8-12,19-20,22-23
2422 atoms, 12 residues, 12 models selected
> view #!1.4.2,4-5,8-12,16,19-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-12,16,19-20,22-23
> select #!1.4.2,4-5,8-12,16,19-20,22-23
2603 atoms, 13 residues, 13 models selected
> view #!1.4.2,4-5,8-12,16-17,19-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-12,16-17,19-20,22-23
> select #!1.4.2,4-5,8-12,16-17,19-20,22-23
2681 atoms, 14 residues, 14 models selected
> view #!1.4.2,4-5,8-12,16-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2,4-5,8-12,16-20,22-23
> select #!1.4.2,4-5,8-12,16-20,22-23
2759 atoms, 15 residues, 15 models selected
> view #!1.4.2-5,8-12,16-20,22-23 @< 3.0
> zoom 0.75
moved plane near -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,8-12,16-20,22-23
> select #!1.4.2-5,8-12,16-20,22-23
2848 atoms, 16 residues, 16 models selected
> view #!1.4.2-5,8-12,16-23 @< 3.0
> zoom 0.75
moved plane near -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.00863909584896 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,8-12,16-23
> select #!1.4.2-5,8-12,16-23
2887 atoms, 17 residues, 17 models selected
> view #!1.4.2-5,7-12,16-23 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-12,16-23
> select #!1.4.2-5,7-12,16-23
3590 atoms, 18 residues, 18 models selected
> view #!1.4.2-12,16-23 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-12,16-23
> select #!1.4.2-12,16-23
3647 atoms, 19 residues, 19 models selected
> view #!1.4.2-12,16-23 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-12,16-23
> select #!1.4.2-12,16-23
3647 atoms, 19 residues, 19 models selected
> view #!1.4.2-9,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-9,11-12,16-23
> select #!1.4.2-9,11-12,16-23
3318 atoms, 18 residues, 18 models selected
> view #!1.4.11 @< 3.0
> zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @< 3.0
> zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.11,19,22 @< 3.0
> zoom 0.75
moved plane near -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
moved plane far -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19,22
> select #!1.4.11,19,22
811 atoms, 3 residues, 3 models selected
> view #!1.4.11,18-19,22 @< 3.0
> zoom 0.75
moved plane near -43.11452103715933 [-0.36948623 0.69372777 0.61824075]
moved plane far -43.11452103715933 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,18-19,22
> select #!1.4.11,18-19,22
889 atoms, 4 residues, 4 models selected
> view #!1.4.3,11,18-19,22 @< 3.0
> zoom 0.75
moved plane near -48.577857756738716 [-0.36948623 0.69372777 0.61824075]
moved plane far -48.577857756738716 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,11,18-19,22
> select #!1.4.3,11,18-19,22
978 atoms, 5 residues, 5 models selected
> view #!1.4.3,8,11,18-19,22 @< 3.0
> zoom 0.75
moved plane near -56.50978115131668 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.50978115131668 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,18-19,22
> select #!1.4.3,8,11,18-19,22
1008 atoms, 6 residues, 6 models selected
> view #!1.4.3,8,11,18-19,22-23 @< 3.0
> zoom 0.75
moved plane near -56.50980184330376 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.50980184330376 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,18-19,22-23
> select #!1.4.3,8,11,18-19,22-23
1042 atoms, 7 residues, 7 models selected
> view #!1.4.3,5,8,11,18-19,22-23 @< 3.0
> zoom 0.75
moved plane near -57.568890212715274 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.568890212715274 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,5,8,11,18-19,22-23
> select #!1.4.3,5,8,11,18-19,22-23
1124 atoms, 8 residues, 8 models selected
> view #!1.4.3,5,8,11,18-19,21-23 @< 3.0
> zoom 0.75
moved plane near -58.89471502839948 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.89471502839948 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,5,8,11,18-19,21-23
> select #!1.4.3,5,8,11,18-19,21-23
1163 atoms, 9 residues, 9 models selected
> view #!1.4.2-3,5,8,11,18-19,21-23 @< 3.0
> zoom 0.75
moved plane near -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,5,8,11,18-19,21-23
> select #!1.4.2-3,5,8,11,18-19,21-23
1567 atoms, 10 residues, 10 models selected
> view #!1.4.2-3,5,8,11,16,18-19,21-23 @< 3.0
> zoom 0.75
moved plane near -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,5,8,11,16,18-19,21-23
> select #!1.4.2-3,5,8,11,16,18-19,21-23
1748 atoms, 11 residues, 11 models selected
> view #!1.4.2-3,5,8-9,11,16,18-19,21-23 @< 3.0
> zoom 0.75
moved plane near -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,5,8-9,11,16,18-19,21-23
> select #!1.4.2-3,5,8-9,11,16,18-19,21-23
1781 atoms, 12 residues, 12 models selected
> view #!1.4.2-5,8-9,11,16,18-19,21-23 @< 3.0
> zoom 0.75
moved plane near -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,8-9,11,16,18-19,21-23
> select #!1.4.2-5,8-9,11,16,18-19,21-23
2042 atoms, 13 residues, 13 models selected
> view #!1.4.2-5,7-9,11,16,18-19,21-23 @< 3.0
> zoom 0.75
moved plane near -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-9,11,16,18-19,21-23
> select #!1.4.2-5,7-9,11,16,18-19,21-23
2745 atoms, 14 residues, 14 models selected
> view #!1.4.2-5,7-9,11,16-19,21-23 @< 3.0
> zoom 0.75
moved plane near -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-9,11,16-19,21-23
> select #!1.4.2-5,7-9,11,16-19,21-23
2823 atoms, 15 residues, 15 models selected
> view #!1.4.2-5,7-9,11-12,16-19,21-23 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-9,11-12,16-19,21-23
> select #!1.4.2-5,7-9,11-12,16-19,21-23
3023 atoms, 16 residues, 16 models selected
> view #!1.4.2-9,11-12,16-19,21-23 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-9,11-12,16-19,21-23
> select #!1.4.2-9,11-12,16-19,21-23
3080 atoms, 17 residues, 17 models selected
> view #!1.4.2-9,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-9,11-12,16-23
> select #!1.4.2-9,11-12,16-23
3318 atoms, 18 residues, 18 models selected
> view #!1.4.2-9,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-9,11-12,16-23
> select #!1.4.2-9,11-12,16-23
3318 atoms, 18 residues, 18 models selected
> view #!1.4.2-5,7-9,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-9,11-12,16-23
> select #!1.4.2-5,7-9,11-12,16-23
3261 atoms, 17 residues, 17 models selected
> view #!1.4.11 @< 3.0
> zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @< 3.0
> zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.11,19,22 @< 3.0
> zoom 0.75
moved plane near -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
moved plane far -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19,22
> select #!1.4.11,19,22
811 atoms, 3 residues, 3 models selected
> view #!1.4.11,18-19,22 @< 3.0
> zoom 0.75
moved plane near -43.11452103715933 [-0.36948623 0.69372777 0.61824075]
moved plane far -43.11452103715933 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,18-19,22
> select #!1.4.11,18-19,22
889 atoms, 4 residues, 4 models selected
> view #!1.4.3,11,18-19,22 @< 3.0
> zoom 0.75
moved plane near -48.577857756738716 [-0.36948623 0.69372777 0.61824075]
moved plane far -48.577857756738716 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,11,18-19,22
> select #!1.4.3,11,18-19,22
978 atoms, 5 residues, 5 models selected
> view #!1.4.3,8,11,18-19,22 @< 3.0
> zoom 0.75
moved plane near -56.50978115131668 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.50978115131668 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,18-19,22
> select #!1.4.3,8,11,18-19,22
1008 atoms, 6 residues, 6 models selected
> view #!1.4.3,8,11,18-19,22-23 @< 3.0
> zoom 0.75
moved plane near -56.50980184330376 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.50980184330376 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,18-19,22-23
> select #!1.4.3,8,11,18-19,22-23
1042 atoms, 7 residues, 7 models selected
> view #!1.4.3,5,8,11,18-19,22-23 @< 3.0
> zoom 0.75
moved plane near -57.568890212715274 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.568890212715274 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,5,8,11,18-19,22-23
> select #!1.4.3,5,8,11,18-19,22-23
1124 atoms, 8 residues, 8 models selected
> view #!1.4.3,5,8,11,18-19,21-23 @< 3.0
> zoom 0.75
moved plane near -58.89471502839948 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.89471502839948 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,5,8,11,18-19,21-23
> select #!1.4.3,5,8,11,18-19,21-23
1163 atoms, 9 residues, 9 models selected
> view #!1.4.2-3,5,8,11,18-19,21-23 @< 3.0
> zoom 0.75
moved plane near -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,5,8,11,18-19,21-23
> select #!1.4.2-3,5,8,11,18-19,21-23
1567 atoms, 10 residues, 10 models selected
> view #!1.4.2-3,5,8,11,16,18-19,21-23 @< 3.0
> zoom 0.75
moved plane near -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,5,8,11,16,18-19,21-23
> select #!1.4.2-3,5,8,11,16,18-19,21-23
1748 atoms, 11 residues, 11 models selected
> view #!1.4.2-3,5,7-8,11,16,18-19,21-23 @< 3.0
> zoom 0.75
moved plane near -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,5,7-8,11,16,18-19,21-23
> select #!1.4.2-3,5,7-8,11,16,18-19,21-23
2451 atoms, 12 residues, 12 models selected
> view #!1.4.2-5,7-8,11,16,18-19,21-23 @< 3.0
> zoom 0.75
moved plane near -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-8,11,16,18-19,21-23
> select #!1.4.2-5,7-8,11,16,18-19,21-23
2712 atoms, 13 residues, 13 models selected
> view #!1.4.2-5,7-8,11,16-19,21-23 @< 3.0
> zoom 0.75
moved plane near -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-8,11,16-19,21-23
> select #!1.4.2-5,7-8,11,16-19,21-23
2790 atoms, 14 residues, 14 models selected
> view #!1.4.2-5,7-8,11-12,16-19,21-23 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-8,11-12,16-19,21-23
> select #!1.4.2-5,7-8,11-12,16-19,21-23
2990 atoms, 15 residues, 15 models selected
> view #!1.4.2-5,7-9,11-12,16-19,21-23 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-9,11-12,16-19,21-23
> select #!1.4.2-5,7-9,11-12,16-19,21-23
3023 atoms, 16 residues, 16 models selected
> view #!1.4.2-5,7-9,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-9,11-12,16-23
> select #!1.4.2-5,7-9,11-12,16-23
3261 atoms, 17 residues, 17 models selected
> view #!1.4.2-5,7-9,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-9,11-12,16-23
> select #!1.4.2-5,7-9,11-12,16-23
3261 atoms, 17 residues, 17 models selected
> view #!1.4.2-5,7-8,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-8,11-12,16-23
> select #!1.4.2-5,7-8,11-12,16-23
3228 atoms, 16 residues, 16 models selected
> view #!1.4.11 @< 3.0
> zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @< 3.0
> zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.11,19,22 @< 3.0
> zoom 0.75
moved plane near -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
moved plane far -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19,22
> select #!1.4.11,19,22
811 atoms, 3 residues, 3 models selected
> view #!1.4.3,11,19,22 @< 3.0
> zoom 0.75
moved plane near -48.577857756738716 [-0.36948623 0.69372777 0.61824075]
moved plane far -48.577857756738716 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,11,19,22
> select #!1.4.3,11,19,22
900 atoms, 4 residues, 4 models selected
> view #!1.4.3,8,11,19,22 @< 3.0
> zoom 0.75
moved plane near -56.50978115131668 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.50978115131668 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,19,22
> select #!1.4.3,8,11,19,22
930 atoms, 5 residues, 5 models selected
> view #!1.4.3,8,11,19,22-23 @< 3.0
> zoom 0.75
moved plane near -56.50980184330376 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.50980184330376 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,19,22-23
> select #!1.4.3,8,11,19,22-23
964 atoms, 6 residues, 6 models selected
> view #!1.4.3,5,8,11,19,22-23 @< 3.0
> zoom 0.75
moved plane near -57.568890212715274 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.568890212715274 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,5,8,11,19,22-23
> select #!1.4.3,5,8,11,19,22-23
1046 atoms, 7 residues, 7 models selected
> view #!1.4.3,5,8,11,19,21-23 @< 3.0
> zoom 0.75
moved plane near -58.89471502839948 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.89471502839948 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,5,8,11,19,21-23
> select #!1.4.3,5,8,11,19,21-23
1085 atoms, 8 residues, 8 models selected
> view #!1.4.2-3,5,8,11,19,21-23 @< 3.0
> zoom 0.75
moved plane near -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,5,8,11,19,21-23
> select #!1.4.2-3,5,8,11,19,21-23
1489 atoms, 9 residues, 9 models selected
> view #!1.4.2-3,5,8,11,16,19,21-23 @< 3.0
> zoom 0.75
moved plane near -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.70535309354721 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,5,8,11,16,19,21-23
> select #!1.4.2-3,5,8,11,16,19,21-23
1670 atoms, 10 residues, 10 models selected
> view #!1.4.2-3,5,7-8,11,16,19,21-23 @< 3.0
> zoom 0.75
moved plane near -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,5,7-8,11,16,19,21-23
> select #!1.4.2-3,5,7-8,11,16,19,21-23
2373 atoms, 11 residues, 11 models selected
> view #!1.4.2-5,7-8,11,16,19,21-23 @< 3.0
> zoom 0.75
moved plane near -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-8,11,16,19,21-23
> select #!1.4.2-5,7-8,11,16,19,21-23
2634 atoms, 12 residues, 12 models selected
> view #!1.4.2-5,7-8,11,16-17,19,21-23 @< 3.0
> zoom 0.75
moved plane near -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.0988518274174 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-8,11,16-17,19,21-23
> select #!1.4.2-5,7-8,11,16-17,19,21-23
2712 atoms, 13 residues, 13 models selected
> view #!1.4.2-5,7-8,11-12,16-17,19,21-23 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-8,11-12,16-17,19,21-23
> select #!1.4.2-5,7-8,11-12,16-17,19,21-23
2912 atoms, 14 residues, 14 models selected
> view #!1.4.2-5,7-8,11-12,16-19,21-23 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-8,11-12,16-19,21-23
> select #!1.4.2-5,7-8,11-12,16-19,21-23
2990 atoms, 15 residues, 15 models selected
> view #!1.4.2-5,7-8,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-8,11-12,16-23
> select #!1.4.2-5,7-8,11-12,16-23
3228 atoms, 16 residues, 16 models selected
> view #!1.4.2-5,7-8,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-5,7-8,11-12,16-23
> select #!1.4.2-5,7-8,11-12,16-23
3228 atoms, 16 residues, 16 models selected
> view #!1.4.2-4,7-8,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -63.58275918008911 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.58275918008911 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-4,7-8,11-12,16-23
> select #!1.4.2-4,7-8,11-12,16-23
3146 atoms, 15 residues, 15 models selected
> view #!1.4.11 @< 3.0
> zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @< 3.0
> zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.11,19,22 @< 3.0
> zoom 0.75
moved plane near -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
moved plane far -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19,22
> select #!1.4.11,19,22
811 atoms, 3 residues, 3 models selected
> view #!1.4.8,11,19,22 @< 3.0
> zoom 0.75
moved plane near -50.784107656417966 [-0.36948623 0.69372777 0.61824075]
moved plane far -50.784107656417966 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19,22
> select #!1.4.8,11,19,22
841 atoms, 4 residues, 4 models selected
> view #!1.4.3,8,11,19,22 @< 3.0
> zoom 0.75
moved plane near -56.50978115131668 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.50978115131668 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,19,22
> select #!1.4.3,8,11,19,22
930 atoms, 5 residues, 5 models selected
> view #!1.4.3,8,11,19,22-23 @< 3.0
> zoom 0.75
moved plane near -56.50980184330376 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.50980184330376 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,19,22-23
> select #!1.4.3,8,11,19,22-23
964 atoms, 6 residues, 6 models selected
> view #!1.4.3,8,11,19,21-23 @< 3.0
> zoom 0.75
moved plane near -57.80165152923424 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.80165152923424 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,19,21-23
> select #!1.4.3,8,11,19,21-23
1003 atoms, 7 residues, 7 models selected
> view #!1.4.2-3,8,11,19,21-23 @< 3.0
> zoom 0.75
moved plane near -62.96969366358866 [-0.36948623 0.69372777 0.61824075]
moved plane far -62.96969366358866 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,8,11,19,21-23
> select #!1.4.2-3,8,11,19,21-23
1407 atoms, 8 residues, 8 models selected
> view #!1.4.2-3,8,11,16,19,21-23 @< 3.0
> zoom 0.75
moved plane near -62.96969366358866 [-0.36948623 0.69372777 0.61824075]
moved plane far -62.96969366358866 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,8,11,16,19,21-23
> select #!1.4.2-3,8,11,16,19,21-23
1588 atoms, 9 residues, 9 models selected
> view #!1.4.2-3,7-8,11,16,19,21-23 @< 3.0
> zoom 0.75
moved plane near -63.36319239745884 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.36319239745884 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-3,7-8,11,16,19,21-23
> select #!1.4.2-3,7-8,11,16,19,21-23
2291 atoms, 10 residues, 10 models selected
> view #!1.4.2-4,7-8,11,16,19,21-23 @< 3.0
> zoom 0.75
moved plane near -63.36319239745884 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.36319239745884 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-4,7-8,11,16,19,21-23
> select #!1.4.2-4,7-8,11,16,19,21-23
2552 atoms, 11 residues, 11 models selected
> view #!1.4.2-4,7-8,11,16-17,19,21-23 @< 3.0
> zoom 0.75
moved plane near -63.36319239745884 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.36319239745884 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-4,7-8,11,16-17,19,21-23
> select #!1.4.2-4,7-8,11,16-17,19,21-23
2630 atoms, 12 residues, 12 models selected
> view #!1.4.2-4,7-8,11-12,16-17,19,21-23 @< 3.0
> zoom 0.75
moved plane near -63.57233454842632 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.57233454842632 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-4,7-8,11-12,16-17,19,21-23
> select #!1.4.2-4,7-8,11-12,16-17,19,21-23
2830 atoms, 13 residues, 13 models selected
> view #!1.4.2-4,7-8,11-12,16-19,21-23 @< 3.0
> zoom 0.75
moved plane near -63.57233454842632 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.57233454842632 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-4,7-8,11-12,16-19,21-23
> select #!1.4.2-4,7-8,11-12,16-19,21-23
2908 atoms, 14 residues, 14 models selected
> view #!1.4.2-4,7-8,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -63.58275918008911 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.58275918008911 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-4,7-8,11-12,16-23
> select #!1.4.2-4,7-8,11-12,16-23
3146 atoms, 15 residues, 15 models selected
> view #!1.4.2-4,7-8,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -63.58275918008911 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.58275918008911 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.2-4,7-8,11-12,16-23
> select #!1.4.2-4,7-8,11-12,16-23
3146 atoms, 15 residues, 15 models selected
> view #!1.4.3-4,7-8,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -58.414964151047094 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.414964151047094 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3-4,7-8,11-12,16-23
> select #!1.4.3-4,7-8,11-12,16-23
2742 atoms, 14 residues, 14 models selected
> view #!1.4.11 @< 3.0
> zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @< 3.0
> zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.11,19,22 @< 3.0
> zoom 0.75
moved plane near -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
moved plane far -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19,22
> select #!1.4.11,19,22
811 atoms, 3 residues, 3 models selected
> view #!1.4.3,11,19,22 @< 3.0
> zoom 0.75
moved plane near -48.577857756738716 [-0.36948623 0.69372777 0.61824075]
moved plane far -48.577857756738716 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,11,19,22
> select #!1.4.3,11,19,22
900 atoms, 4 residues, 4 models selected
> view #!1.4.3,8,11,19,22 @< 3.0
> zoom 0.75
moved plane near -56.50978115131668 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.50978115131668 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,19,22
> select #!1.4.3,8,11,19,22
930 atoms, 5 residues, 5 models selected
> view #!1.4.3,8,11,19,22-23 @< 3.0
> zoom 0.75
moved plane near -56.50980184330376 [-0.36948623 0.69372777 0.61824075]
moved plane far -56.50980184330376 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,19,22-23
> select #!1.4.3,8,11,19,22-23
964 atoms, 6 residues, 6 models selected
> view #!1.4.3,8,11,19,21-23 @< 3.0
> zoom 0.75
moved plane near -57.80165152923424 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.80165152923424 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,19,21-23
> select #!1.4.3,8,11,19,21-23
1003 atoms, 7 residues, 7 models selected
> view #!1.4.3,8,11,16,19,21-23 @< 3.0
> zoom 0.75
moved plane near -57.80165152923424 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.80165152923424 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,8,11,16,19,21-23
> select #!1.4.3,8,11,16,19,21-23
1184 atoms, 8 residues, 8 models selected
> view #!1.4.3,7-8,11,16,19,21-23 @< 3.0
> zoom 0.75
moved plane near -58.19540881200797 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.19540881200797 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3,7-8,11,16,19,21-23
> select #!1.4.3,7-8,11,16,19,21-23
1887 atoms, 9 residues, 9 models selected
> view #!1.4.3-4,7-8,11,16,19,21-23 @< 3.0
> zoom 0.75
moved plane near -58.19540881200797 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.19540881200797 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3-4,7-8,11,16,19,21-23
> select #!1.4.3-4,7-8,11,16,19,21-23
2148 atoms, 10 residues, 10 models selected
> view #!1.4.3-4,7-8,11,16-17,19,21-23 @< 3.0
> zoom 0.75
moved plane near -58.19540881200797 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.19540881200797 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3-4,7-8,11,16-17,19,21-23
> select #!1.4.3-4,7-8,11,16-17,19,21-23
2226 atoms, 11 residues, 11 models selected
> view #!1.4.3-4,7-8,11-12,16-17,19,21-23 @< 3.0
> zoom 0.75
moved plane near -58.40453801619302 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.40453801619302 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3-4,7-8,11-12,16-17,19,21-23
> select #!1.4.3-4,7-8,11-12,16-17,19,21-23
2426 atoms, 12 residues, 12 models selected
> view #!1.4.3-4,7-8,11-12,16-19,21-23 @< 3.0
> zoom 0.75
moved plane near -58.40453801619302 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.40453801619302 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3-4,7-8,11-12,16-19,21-23
> select #!1.4.3-4,7-8,11-12,16-19,21-23
2504 atoms, 13 residues, 13 models selected
> view #!1.4.3-4,7-8,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -58.414964151047094 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.414964151047094 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3-4,7-8,11-12,16-23
> select #!1.4.3-4,7-8,11-12,16-23
2742 atoms, 14 residues, 14 models selected
> view #!1.4.3-4,7-8,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -58.414964151047094 [-0.36948623 0.69372777 0.61824075]
moved plane far -58.414964151047094 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.3-4,7-8,11-12,16-23
> select #!1.4.3-4,7-8,11-12,16-23
2742 atoms, 14 residues, 14 models selected
> view #!1.4.4,7-8,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -57.99361361564829 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.99361361564829 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.4,7-8,11-12,16-23
> select #!1.4.4,7-8,11-12,16-23
2653 atoms, 13 residues, 13 models selected
> view #!1.4.11 @< 3.0
> zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @< 3.0
> zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.11,19,22 @< 3.0
> zoom 0.75
moved plane near -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
moved plane far -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19,22
> select #!1.4.11,19,22
811 atoms, 3 residues, 3 models selected
> view #!1.4.8,11,19,22 @< 3.0
> zoom 0.75
moved plane near -50.784107656417966 [-0.36948623 0.69372777 0.61824075]
moved plane far -50.784107656417966 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19,22
> select #!1.4.8,11,19,22
841 atoms, 4 residues, 4 models selected
> view #!1.4.8,11,19,22-23 @< 3.0
> zoom 0.75
moved plane near -50.78412834840504 [-0.36948623 0.69372777 0.61824075]
moved plane far -50.78412834840504 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19,22-23
> select #!1.4.8,11,19,22-23
875 atoms, 5 residues, 5 models selected
> view #!1.4.8,11,19,21-23 @< 3.0
> zoom 0.75
moved plane near -52.075975027952886 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.075975027952886 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19,21-23
> select #!1.4.8,11,19,21-23
914 atoms, 6 residues, 6 models selected
> view #!1.4.8,11,16,19,21-23 @< 3.0
> zoom 0.75
moved plane near -54.75637539757262 [-0.36948623 0.69372777 0.61824075]
moved plane far -54.75637539757262 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,16,19,21-23
> select #!1.4.8,11,16,19,21-23
1095 atoms, 7 residues, 7 models selected
> view #!1.4.7-8,11,16,19,21-23 @< 3.0
> zoom 0.75
moved plane near -55.15013268034636 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.15013268034636 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,16,19,21-23
> select #!1.4.7-8,11,16,19,21-23
1798 atoms, 8 residues, 8 models selected
> view #!1.4.4,7-8,11,16,19,21-23 @< 3.0
> zoom 0.75
moved plane near -57.77404833620932 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.77404833620932 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.4,7-8,11,16,19,21-23
> select #!1.4.4,7-8,11,16,19,21-23
2059 atoms, 9 residues, 9 models selected
> view #!1.4.4,7-8,11,16-17,19,21-23 @< 3.0
> zoom 0.75
moved plane near -57.77404833620932 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.77404833620932 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.4,7-8,11,16-17,19,21-23
> select #!1.4.4,7-8,11,16-17,19,21-23
2137 atoms, 10 residues, 10 models selected
> view #!1.4.4,7-8,11-12,16-17,19,21-23 @< 3.0
> zoom 0.75
moved plane near -57.98319048717681 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.98319048717681 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.4,7-8,11-12,16-17,19,21-23
> select #!1.4.4,7-8,11-12,16-17,19,21-23
2337 atoms, 11 residues, 11 models selected
> view #!1.4.4,7-8,11-12,16-19,21-23 @< 3.0
> zoom 0.75
moved plane near -57.98319048717681 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.98319048717681 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.4,7-8,11-12,16-19,21-23
> select #!1.4.4,7-8,11-12,16-19,21-23
2415 atoms, 12 residues, 12 models selected
> view #!1.4.4,7-8,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -57.99361361564829 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.99361361564829 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.4,7-8,11-12,16-23
> select #!1.4.4,7-8,11-12,16-23
2653 atoms, 13 residues, 13 models selected
> view #!1.4.4,7-8,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -57.99361361564829 [-0.36948623 0.69372777 0.61824075]
moved plane far -57.99361361564829 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.4,7-8,11-12,16-23
> select #!1.4.4,7-8,11-12,16-23
2653 atoms, 13 residues, 13 models selected
> view #!1.4.7-8,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-23
> select #!1.4.7-8,11-12,16-23
2392 atoms, 12 residues, 12 models selected
> view #!1.4.11 @< 3.0
> zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @< 3.0
> zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.11,19,22 @< 3.0
> zoom 0.75
moved plane near -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
moved plane far -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19,22
> select #!1.4.11,19,22
811 atoms, 3 residues, 3 models selected
> view #!1.4.8,11,19,22 @< 3.0
> zoom 0.75
moved plane near -50.784107656417966 [-0.36948623 0.69372777 0.61824075]
moved plane far -50.784107656417966 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19,22
> select #!1.4.8,11,19,22
841 atoms, 4 residues, 4 models selected
> view #!1.4.8,11,19,22-23 @< 3.0
> zoom 0.75
moved plane near -50.78412834840504 [-0.36948623 0.69372777 0.61824075]
moved plane far -50.78412834840504 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19,22-23
> select #!1.4.8,11,19,22-23
875 atoms, 5 residues, 5 models selected
> view #!1.4.8,11,19,21-23 @< 3.0
> zoom 0.75
moved plane near -52.075975027952886 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.075975027952886 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19,21-23
> select #!1.4.8,11,19,21-23
914 atoms, 6 residues, 6 models selected
> view #!1.4.8,11,16,19,21-23 @< 3.0
> zoom 0.75
moved plane near -54.75637539757262 [-0.36948623 0.69372777 0.61824075]
moved plane far -54.75637539757262 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,16,19,21-23
> select #!1.4.8,11,16,19,21-23
1095 atoms, 7 residues, 7 models selected
> view #!1.4.7-8,11,16,19,21-23 @< 3.0
> zoom 0.75
moved plane near -55.15013268034636 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.15013268034636 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,16,19,21-23
> select #!1.4.7-8,11,16,19,21-23
1798 atoms, 8 residues, 8 models selected
> view #!1.4.7-8,11,16-17,19,21-23 @< 3.0
> zoom 0.75
moved plane near -55.15013268034636 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.15013268034636 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,16-17,19,21-23
> select #!1.4.7-8,11,16-17,19,21-23
1876 atoms, 9 residues, 9 models selected
> view #!1.4.7-8,11-12,16-17,19,21-23 @< 3.0
> zoom 0.75
moved plane near -55.35926489091401 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.35926489091401 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-17,19,21-23
> select #!1.4.7-8,11-12,16-17,19,21-23
2076 atoms, 10 residues, 10 models selected
> view #!1.4.7-8,11-12,16-19,21-23 @< 3.0
> zoom 0.75
moved plane near -55.35926489091401 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.35926489091401 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-19,21-23
> select #!1.4.7-8,11-12,16-19,21-23
2154 atoms, 11 residues, 11 models selected
> view #!1.4.7-8,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-23
> select #!1.4.7-8,11-12,16-23
2392 atoms, 12 residues, 12 models selected
> view #!1.4.7-8,11-12,16-23 @< 3.0
> zoom 0.75
moved plane near -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-23
> select #!1.4.7-8,11-12,16-23
2392 atoms, 12 residues, 12 models selected
> view #!1.4.7-8,11-12,16-20,22-23 @< 3.0
> zoom 0.75
moved plane near -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-20,22-23
> select #!1.4.7-8,11-12,16-20,22-23
2353 atoms, 11 residues, 11 models selected
> view #!1.4.11 @< 3.0
> zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @< 3.0
> zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.11,19,22 @< 3.0
> zoom 0.75
moved plane near -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
moved plane far -42.85176356145761 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19,22
> select #!1.4.11,19,22
811 atoms, 3 residues, 3 models selected
> view #!1.4.8,11,19,22 @< 3.0
> zoom 0.75
moved plane near -50.784107656417966 [-0.36948623 0.69372777 0.61824075]
moved plane far -50.784107656417966 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19,22
> select #!1.4.8,11,19,22
841 atoms, 4 residues, 4 models selected
> view #!1.4.8,11,19,22-23 @< 3.0
> zoom 0.75
moved plane near -50.78412834840504 [-0.36948623 0.69372777 0.61824075]
moved plane far -50.78412834840504 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19,22-23
> select #!1.4.8,11,19,22-23
875 atoms, 5 residues, 5 models selected
> view #!1.4.8,11,16,19,22-23 @< 3.0
> zoom 0.75
moved plane near -53.464525711642175 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.464525711642175 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,16,19,22-23
> select #!1.4.8,11,16,19,22-23
1056 atoms, 6 residues, 6 models selected
> view #!1.4.7-8,11,16,19,22-23 @< 3.0
> zoom 0.75
moved plane near -53.85643849293674 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.85643849293674 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,16,19,22-23
> select #!1.4.7-8,11,16,19,22-23
1759 atoms, 7 residues, 7 models selected
> view #!1.4.7-8,11,16-17,19,22-23 @< 3.0
> zoom 0.75
moved plane near -53.85643849293674 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.85643849293674 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,16-17,19,22-23
> select #!1.4.7-8,11,16-17,19,22-23
1837 atoms, 8 residues, 8 models selected
> view #!1.4.7-8,11-12,16-17,19,22-23 @< 3.0
> zoom 0.75
moved plane near -55.35926489091401 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.35926489091401 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-17,19,22-23
> select #!1.4.7-8,11-12,16-17,19,22-23
2037 atoms, 9 residues, 9 models selected
> view #!1.4.7-8,11-12,16-19,22-23 @< 3.0
> zoom 0.75
moved plane near -55.35926489091401 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.35926489091401 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-19,22-23
> select #!1.4.7-8,11-12,16-19,22-23
2115 atoms, 10 residues, 10 models selected
> view #!1.4.7-8,11-12,16-20,22-23 @< 3.0
> zoom 0.75
moved plane near -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-20,22-23
> select #!1.4.7-8,11-12,16-20,22-23
2353 atoms, 11 residues, 11 models selected
> view #!1.4.7-8,11-12,16-20,22-23 @< 3.0
> zoom 0.75
moved plane near -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
moved plane far -55.3696910257681 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-20,22-23
> select #!1.4.7-8,11-12,16-20,22-23
2353 atoms, 11 residues, 11 models selected
> view #!1.4.7-8,11-12,16-20,23 @< 3.0
> zoom 0.75
moved plane near -53.771207427011404 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.771207427011404 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-20,23
> select #!1.4.7-8,11-12,16-20,23
2258 atoms, 10 residues, 10 models selected
> view #!1.4.11 @< 3.0
> zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @< 3.0
> zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.8,11,19 @< 3.0
> zoom 0.75
moved plane near -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
moved plane far -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19
> select #!1.4.8,11,19
746 atoms, 3 residues, 3 models selected
> view #!1.4.8,11,19,23 @< 3.0
> zoom 0.75
moved plane near -49.72659400725848 [-0.36948623 0.69372777 0.61824075]
moved plane far -49.72659400725848 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19,23
> select #!1.4.8,11,19,23
780 atoms, 4 residues, 4 models selected
> view #!1.4.8,11,16,19,23 @< 3.0
> zoom 0.75
moved plane near -52.407177598379285 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.407177598379285 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,16,19,23
> select #!1.4.8,11,16,19,23
961 atoms, 5 residues, 5 models selected
> view #!1.4.7-8,11,16,19,23 @< 3.0
> zoom 0.75
moved plane near -52.798941273676526 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.798941273676526 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,16,19,23
> select #!1.4.7-8,11,16,19,23
1664 atoms, 6 residues, 6 models selected
> view #!1.4.7-8,11,16-17,19,23 @< 3.0
> zoom 0.75
moved plane near -52.798941273676526 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.798941273676526 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,16-17,19,23
> select #!1.4.7-8,11,16-17,19,23
1742 atoms, 7 residues, 7 models selected
> view #!1.4.7-8,11-12,16-17,19,23 @< 3.0
> zoom 0.75
moved plane near -53.370213042762835 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.370213042762835 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-17,19,23
> select #!1.4.7-8,11-12,16-17,19,23
1942 atoms, 8 residues, 8 models selected
> view #!1.4.7-8,11-12,16-19,23 @< 3.0
> zoom 0.75
moved plane near -53.370213042762835 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.370213042762835 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-19,23
> select #!1.4.7-8,11-12,16-19,23
2020 atoms, 9 residues, 9 models selected
> view #!1.4.7-8,11-12,16-20,23 @< 3.0
> zoom 0.75
moved plane near -53.771207427011404 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.771207427011404 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-20,23
> select #!1.4.7-8,11-12,16-20,23
2258 atoms, 10 residues, 10 models selected
> view #!1.4.7-8,11-12,16-20,23 @< 3.0
> zoom 0.75
moved plane near -53.771207427011404 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.771207427011404 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-20,23
> select #!1.4.7-8,11-12,16-20,23
2258 atoms, 10 residues, 10 models selected
> view #!1.4.7-8,11-12,16-20 @< 3.0
> zoom 0.75
moved plane near -53.32958178193442 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.32958178193442 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-20
> select #!1.4.7-8,11-12,16-20
2224 atoms, 9 residues, 9 models selected
> view #!1.4.11 @< 3.0
> zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @< 3.0
> zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.8,11,19 @< 3.0
> zoom 0.75
moved plane near -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
moved plane far -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19
> select #!1.4.8,11,19
746 atoms, 3 residues, 3 models selected
> view #!1.4.8,11,16,19 @< 3.0
> zoom 0.75
moved plane near -51.389550783499914 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.389550783499914 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,16,19
> select #!1.4.8,11,16,19
927 atoms, 4 residues, 4 models selected
> view #!1.4.7-8,11,16,19 @< 3.0
> zoom 0.75
moved plane near -51.7814605584119 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.7814605584119 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,16,19
> select #!1.4.7-8,11,16,19
1630 atoms, 5 residues, 5 models selected
> view #!1.4.7-8,11,16-17,19 @< 3.0
> zoom 0.75
moved plane near -51.7814605584119 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.7814605584119 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,16-17,19
> select #!1.4.7-8,11,16-17,19
1708 atoms, 6 residues, 6 models selected
> view #!1.4.7-8,11-12,16-17,19 @< 3.0
> zoom 0.75
moved plane near -53.31915564708034 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.31915564708034 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-17,19
> select #!1.4.7-8,11-12,16-17,19
1908 atoms, 7 residues, 7 models selected
> view #!1.4.7-8,11-12,16-19 @< 3.0
> zoom 0.75
moved plane near -53.31915564708034 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.31915564708034 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-19
> select #!1.4.7-8,11-12,16-19
1986 atoms, 8 residues, 8 models selected
> view #!1.4.7-8,11-12,16-20 @< 3.0
> zoom 0.75
moved plane near -53.32958178193442 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.32958178193442 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-20
> select #!1.4.7-8,11-12,16-20
2224 atoms, 9 residues, 9 models selected
> view #!1.4.7-8,11-12,16-20 @< 3.0
> zoom 0.75
moved plane near -53.32958178193442 [-0.36948623 0.69372777 0.61824075]
moved plane far -53.32958178193442 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,16-20
> select #!1.4.7-8,11-12,16-20
2224 atoms, 9 residues, 9 models selected
> view #!1.4.7-8,11-12,17-20 @< 3.0
> zoom 0.75
moved plane near -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,17-20
> select #!1.4.7-8,11-12,17-20
2043 atoms, 8 residues, 8 models selected
> view #!1.4.11 @< 3.0
> zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @< 3.0
> zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.8,11,19 @< 3.0
> zoom 0.75
moved plane near -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
moved plane far -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19
> select #!1.4.8,11,19
746 atoms, 3 residues, 3 models selected
> view #!1.4.8,11,17,19 @< 3.0
> zoom 0.75
moved plane near -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
moved plane far -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,17,19
> select #!1.4.8,11,17,19
824 atoms, 4 residues, 4 models selected
> view #!1.4.7-8,11,17,19 @< 3.0
> zoom 0.75
moved plane near -50.61923221620078 [-0.36948623 0.69372777 0.61824075]
moved plane far -50.61923221620078 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,17,19
> select #!1.4.7-8,11,17,19
1527 atoms, 5 residues, 5 models selected
> view #!1.4.7-8,11-12,17,19 @< 3.0
> zoom 0.75
moved plane near -51.969822165407926 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.969822165407926 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,17,19
> select #!1.4.7-8,11-12,17,19
1727 atoms, 6 residues, 6 models selected
> view #!1.4.7-8,11-12,17-19 @< 3.0
> zoom 0.75
moved plane near -51.969822165407926 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.969822165407926 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,17-19
> select #!1.4.7-8,11-12,17-19
1805 atoms, 7 residues, 7 models selected
> view #!1.4.7-8,11-12,17-20 @< 3.0
> zoom 0.75
moved plane near -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,17-20
> select #!1.4.7-8,11-12,17-20
2043 atoms, 8 residues, 8 models selected
> view #!1.4.7-8,11-12,17-20 @< 3.0
> zoom 0.75
moved plane near -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,17-20
> select #!1.4.7-8,11-12,17-20
2043 atoms, 8 residues, 8 models selected
> view #!1.4.7-8,11-12,18-20 @< 3.0
> zoom 0.75
moved plane near -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,18-20
> select #!1.4.7-8,11-12,18-20
1965 atoms, 7 residues, 7 models selected
> view #!1.4.11 @< 3.0
> zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @< 3.0
> zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.8,11,19 @< 3.0
> zoom 0.75
moved plane near -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
moved plane far -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19
> select #!1.4.8,11,19
746 atoms, 3 residues, 3 models selected
> view #!1.4.7-8,11,19 @< 3.0
> zoom 0.75
moved plane near -50.61923221620078 [-0.36948623 0.69372777 0.61824075]
moved plane far -50.61923221620078 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,19
> select #!1.4.7-8,11,19
1449 atoms, 4 residues, 4 models selected
> view #!1.4.7-8,11-12,19 @< 3.0
> zoom 0.75
moved plane near -51.969822165407926 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.969822165407926 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,19
> select #!1.4.7-8,11-12,19
1649 atoms, 5 residues, 5 models selected
> view #!1.4.7-8,11-12,18-19 @< 3.0
> zoom 0.75
moved plane near -51.969822165407926 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.969822165407926 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,18-19
> select #!1.4.7-8,11-12,18-19
1727 atoms, 6 residues, 6 models selected
> view #!1.4.7-8,11-12,18-20 @< 3.0
> zoom 0.75
moved plane near -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,18-20
> select #!1.4.7-8,11-12,18-20
1965 atoms, 7 residues, 7 models selected
> view #!1.4.7-8,11-12,18-20 @< 3.0
> zoom 0.75
moved plane near -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,18-20
> select #!1.4.7-8,11-12,18-20
1965 atoms, 7 residues, 7 models selected
> view #!1.4.7-8,11-12,19-20 @< 3.0
> zoom 0.75
moved plane near -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,19-20
> select #!1.4.7-8,11-12,19-20
1887 atoms, 6 residues, 6 models selected
> view #!1.4.19 @< 3.0
> zoom 0.75
moved plane near -19.24998229914558 [-0.36948623 0.69372777 0.61824075]
moved plane far -19.24998229914558 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.19
> select #!1.4.19
216 atoms, 1 residue, 1 model selected
> view #!1.4.11,19 @< 3.0
> zoom 0.75
moved plane near -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
moved plane far -31.48935702365141 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11,19
> select #!1.4.11,19
716 atoms, 2 residues, 2 models selected
> view #!1.4.8,11,19 @< 3.0
> zoom 0.75
moved plane near -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
moved plane far -47.92952961699518 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11,19
> select #!1.4.8,11,19
746 atoms, 3 residues, 3 models selected
> view #!1.4.7-8,11,19 @< 3.0
> zoom 0.75
moved plane near -50.61923221620078 [-0.36948623 0.69372777 0.61824075]
moved plane far -50.61923221620078 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11,19
> select #!1.4.7-8,11,19
1449 atoms, 4 residues, 4 models selected
> view #!1.4.7-8,11-12,19 @< 3.0
> zoom 0.75
moved plane near -51.969822165407926 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.969822165407926 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,19
> select #!1.4.7-8,11-12,19
1649 atoms, 5 residues, 5 models selected
> view #!1.4.7-8,11-12,19-20 @< 3.0
> zoom 0.75
moved plane near -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,19-20
> select #!1.4.7-8,11-12,19-20
1887 atoms, 6 residues, 6 models selected
> view #!1.4.7-8,11-12,19-20 @< 3.0
> zoom 0.75
moved plane near -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.66818390654015 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,19-20
> select #!1.4.7-8,11-12,19-20
1887 atoms, 6 residues, 6 models selected
> view #!1.4.7-8,11-12,20 @< 3.0
> zoom 0.75
moved plane near -51.03431845110591 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.03431845110591 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,20
> select #!1.4.7-8,11-12,20
1671 atoms, 5 residues, 5 models selected
> view #!1.4.11 @< 3.0
> zoom 0.75
moved plane near -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
moved plane far -24.555805223985143 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.11
> select #!1.4.11
500 atoms, 1 residue, 1 model selected
> view #!1.4.8,11 @< 3.0
> zoom 0.75
moved plane near -41.01393241265763 [-0.36948623 0.69372777 0.61824075]
moved plane far -41.01393241265763 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11
> select #!1.4.8,11
530 atoms, 2 residues, 2 models selected
> view #!1.4.8,11-12 @< 3.0
> zoom 0.75
moved plane near -42.3419603862123 [-0.36948623 0.69372777 0.61824075]
moved plane far -42.3419603862123 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8,11-12
> select #!1.4.8,11-12
730 atoms, 3 residues, 3 models selected
> view #!1.4.7-8,11-12 @< 3.0
> zoom 0.75
moved plane near -44.963155229085885 [-0.36948623 0.69372777 0.61824075]
moved plane far -44.963155229085885 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12
> select #!1.4.7-8,11-12
1433 atoms, 4 residues, 4 models selected
> view #!1.4.7-8,11-12,20 @< 3.0
> zoom 0.75
moved plane near -51.03431845110591 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.03431845110591 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,20
> select #!1.4.7-8,11-12,20
1671 atoms, 5 residues, 5 models selected
> view #!1.4.7-8,11-12,20 @< 3.0
> zoom 0.75
moved plane near -51.03431845110591 [-0.36948623 0.69372777 0.61824075]
moved plane far -51.03431845110591 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12,20
> select #!1.4.7-8,11-12,20
1671 atoms, 5 residues, 5 models selected
> view #!1.4.7-8,11-12 @< 3.0
> zoom 0.75
moved plane near -44.963155229085885 [-0.36948623 0.69372777 0.61824075]
moved plane far -44.963155229085885 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12
> select #!1.4.7-8,11-12
1433 atoms, 4 residues, 4 models selected
> view #!1.4.8 @< 3.0
> zoom 0.75
moved plane near -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
moved plane far -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8
> select #!1.4.8
30 atoms, 1 residue, 1 model selected
> view #!1.4.7-8 @< 3.0
> zoom 0.75
moved plane near -29.76852086239114 [-0.36948623 0.69372777 0.61824075]
moved plane far -29.76852086239114 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8
> select #!1.4.7-8
733 atoms, 2 residues, 2 models selected
> view #!1.4.7-8,12 @< 3.0
> zoom 0.75
moved plane near -32.61469550566749 [-0.36948623 0.69372777 0.61824075]
moved plane far -32.61469550566749 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,12
> select #!1.4.7-8,12
933 atoms, 3 residues, 3 models selected
> view #!1.4.7-8,11-12 @< 3.0
> zoom 0.75
moved plane near -44.963155229085885 [-0.36948623 0.69372777 0.61824075]
moved plane far -44.963155229085885 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12
> select #!1.4.7-8,11-12
1433 atoms, 4 residues, 4 models selected
> view #!1.4.7-8,11-12 @< 3.0
> zoom 0.75
moved plane near -44.963155229085885 [-0.36948623 0.69372777 0.61824075]
moved plane far -44.963155229085885 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,11-12
> select #!1.4.7-8,11-12
1433 atoms, 4 residues, 4 models selected
> view #!1.4.7-8,12 @< 3.0
> zoom 0.75
moved plane near -32.61469550566749 [-0.36948623 0.69372777 0.61824075]
moved plane far -32.61469550566749 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,12
> select #!1.4.7-8,12
933 atoms, 3 residues, 3 models selected
> view #!1.4.8 @< 3.0
> zoom 0.75
moved plane near -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
moved plane far -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8
> select #!1.4.8
30 atoms, 1 residue, 1 model selected
> view #!1.4.7-8 @< 3.0
> zoom 0.75
moved plane near -29.76852086239114 [-0.36948623 0.69372777 0.61824075]
moved plane far -29.76852086239114 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8
> select #!1.4.7-8
733 atoms, 2 residues, 2 models selected
> view #!1.4.7-8,12 @< 3.0
> zoom 0.75
moved plane near -32.61469550566749 [-0.36948623 0.69372777 0.61824075]
moved plane far -32.61469550566749 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,12
> select #!1.4.7-8,12
933 atoms, 3 residues, 3 models selected
> view #!1.4.7-8,12 @< 3.0
> zoom 0.75
moved plane near -32.61469550566749 [-0.36948623 0.69372777 0.61824075]
moved plane far -32.61469550566749 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8,12
> select #!1.4.7-8,12
933 atoms, 3 residues, 3 models selected
> view #!1.4.7-8 @< 3.0
> zoom 0.75
moved plane near -29.76852086239114 [-0.36948623 0.69372777 0.61824075]
moved plane far -29.76852086239114 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8
> select #!1.4.7-8
733 atoms, 2 residues, 2 models selected
> view #!1.4.8 @< 3.0
> zoom 0.75
moved plane near -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
moved plane far -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8
> select #!1.4.8
30 atoms, 1 residue, 1 model selected
> view #!1.4.7-8 @< 3.0
> zoom 0.75
moved plane near -29.76852086239114 [-0.36948623 0.69372777 0.61824075]
moved plane far -29.76852086239114 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8
> select #!1.4.7-8
733 atoms, 2 residues, 2 models selected
> view #!1.4.7-8 @< 3.0
> zoom 0.75
moved plane near -29.76852086239114 [-0.36948623 0.69372777 0.61824075]
moved plane far -29.76852086239114 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.7-8
> select #!1.4.7-8
733 atoms, 2 residues, 2 models selected
> view #!1.4.8 @< 3.0
> zoom 0.75
moved plane near -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
moved plane far -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8
> select #!1.4.8
30 atoms, 1 residue, 1 model selected
> view #!1.4.8 @< 3.0
> zoom 0.75
moved plane near -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
moved plane far -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8
> select #!1.4.8
30 atoms, 1 residue, 1 model selected
> view #!1.4.8 @< 3.0
> zoom 0.75
moved plane near -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
moved plane far -13.568852548861921 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.4
> surface #!1.4.8
> select #!1.4.8
30 atoms, 1 residue, 1 model selected
> delete bonds (#!1.4.1-13,15-23 & sel)
> ui tool show "Find Cavities"
> kvfinder #1
23 cavities found for 25.3.14 275Y 21h.pdb #!1
25.3.14 275Y 21h.pdb Cavities
---
ID | | Volume | Area | Points
1.5.14 | | 559.44 | 439.97 | 2590
1.5.7 | | 151.85 | 143.35 | 703
1.5.11 | | 108 | 149.87 | 500
1.5.2 | | 87.26 | 125.45 | 404
1.5.10 | | 71.06 | 104.04 | 329
1.5.4 | | 56.38 | 75.88 | 261
1.5.20 | | 51.41 | 58.92 | 238
1.5.19 | | 46.66 | 69.05 | 216
1.5.12 | | 43.2 | 59.01 | 200
1.5.16 | | 39.1 | 60.87 | 181
1.5.22 | | 20.52 | 35.89 | 95
1.5.3 | | 19.22 | 35.47 | 89
1.5.5 | | 17.71 | 26.72 | 82
1.5.17 | | 16.85 | 32.3 | 78
1.5.18 | | 16.85 | 32.3 | 78
1.5.13 | | 15.98 | 25.9 | 74
1.5.6 | | 12.31 | 29.54 | 57
1.5.15 | | 12.31 | 29.54 | 57
1.5.1 | | 10.8 | 20.7 | 50
1.5.21 | | 8.42 | 14.48 | 39
1.5.23 | | 7.34 | 14.56 | 34
1.5.9 | | 7.13 | 14.78 | 33
1.5.8 | | 6.48 | 11.09 | 30
> view #1.5.7 @< 3.0
> zoom 0.75
moved plane near -23.77116514897808 [-0.36948623 0.69372777 0.61824075]
moved plane far -23.77116514897808 [-0.36948623 0.69372777 0.61824075]
> surface #1.5
> transparency #1.5 50
> ~surface #1.5
> surface #1.5.7
> select #1.5.7
703 atoms, 1 residue, 1 model selected
> view #!1.5.7,11 @< 3.0
> zoom 0.75
moved plane near -40.21104559882199 [-0.36948623 0.69372777 0.61824075]
moved plane far -40.21104559882199 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.7,11
> select #!1.5.7,11
1203 atoms, 2 residues, 2 models selected
> view #!1.5.2,7,11 @< 3.0
> zoom 0.75
moved plane near -49.38409733321987 [-0.36948623 0.69372777 0.61824075]
moved plane far -49.38409733321987 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2,7,11
> select #!1.5.2,7,11
1607 atoms, 3 residues, 3 models selected
> view #!1.5.2,7,10-11 @< 3.0
> zoom 0.75
moved plane near -52.935899907416974 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.935899907416974 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2,7,10-11
> select #!1.5.2,7,10-11
1936 atoms, 4 residues, 4 models selected
> view #!1.5.2,4,7,10-11 @< 3.0
> zoom 0.75
moved plane near -52.935899907416974 [-0.36948623 0.69372777 0.61824075]
moved plane far -52.935899907416974 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2,4,7,10-11
> select #!1.5.2,4,7,10-11
2197 atoms, 5 residues, 5 models selected
> view #!1.5.2,4,7,10-11,20 @< 3.0
> zoom 0.75
moved plane near -59.197120422911816 [-0.36948623 0.69372777 0.61824075]
moved plane far -59.197120422911816 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2,4,7,10-11,20
> select #!1.5.2,4,7,10-11,20
2435 atoms, 6 residues, 6 models selected
> view #!1.5.2,4,7,10-11,19-20 @< 3.0
> zoom 0.75
moved plane near -60.784032920268565 [-0.36948623 0.69372777 0.61824075]
moved plane far -60.784032920268565 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2,4,7,10-11,19-20
> select #!1.5.2,4,7,10-11,19-20
2651 atoms, 7 residues, 7 models selected
> view #!1.5.2,4,7,10-12,19-20 @< 3.0
> zoom 0.75
moved plane near -61.0878054604897 [-0.36948623 0.69372777 0.61824075]
moved plane far -61.0878054604897 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2,4,7,10-12,19-20
> select #!1.5.2,4,7,10-12,19-20
2851 atoms, 8 residues, 8 models selected
> view #!1.5.2,4,7,10-12,16,19-20 @< 3.0
> zoom 0.75
moved plane near -61.39113622402149 [-0.36948623 0.69372777 0.61824075]
moved plane far -61.39113622402149 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2,4,7,10-12,16,19-20
> select #!1.5.2,4,7,10-12,16,19-20
3032 atoms, 9 residues, 9 models selected
> view #!1.5.2,4,7,10-12,16,19-20,22 @< 3.0
> zoom 0.75
moved plane near -63.44815186040184 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.44815186040184 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2,4,7,10-12,16,19-20,22
> select #!1.5.2,4,7,10-12,16,19-20,22
3127 atoms, 10 residues, 10 models selected
> view #!1.5.2-4,7,10-12,16,19-20,22 @< 3.0
> zoom 0.75
moved plane near -63.44815186040184 [-0.36948623 0.69372777 0.61824075]
moved plane far -63.44815186040184 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2-4,7,10-12,16,19-20,22
> select #!1.5.2-4,7,10-12,16,19-20,22
3216 atoms, 11 residues, 11 models selected
> view #!1.5.2-5,7,10-12,16,19-20,22 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2-5,7,10-12,16,19-20,22
> select #!1.5.2-5,7,10-12,16,19-20,22
3298 atoms, 12 residues, 12 models selected
> view #!1.5.2-5,7,10-12,16,18-20,22 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2-5,7,10-12,16,18-20,22
> select #!1.5.2-5,7,10-12,16,18-20,22
3376 atoms, 13 residues, 13 models selected
> view #!1.5.2-5,7,10-12,16-20,22 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2-5,7,10-12,16-20,22
> select #!1.5.2-5,7,10-12,16-20,22
3454 atoms, 14 residues, 14 models selected
> view #!1.5.2-5,7,10-13,16-20,22 @< 3.0
> zoom 0.75
moved plane near -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.40187937932382 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2-5,7,10-13,16-20,22
> select #!1.5.2-5,7,10-13,16-20,22
3528 atoms, 15 residues, 15 models selected
> view #!1.5.2-5,7,10-13,15-20,22 @< 3.0
> zoom 0.75
moved plane near -64.6078341780041 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.6078341780041 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2-5,7,10-13,15-20,22
> select #!1.5.2-5,7,10-13,15-20,22
3585 atoms, 16 residues, 16 models selected
> view #!1.5.2-7,10-13,15-20,22 @< 3.0
> zoom 0.75
moved plane near -64.6078341780041 [-0.36948623 0.69372777 0.61824075]
moved plane far -64.6078341780041 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.2-7,10-13,15-20,22
> select #!1.5.2-7,10-13,15-20,22
3642 atoms, 17 residues, 17 models selected
> view #!1.5.1-7,10-13,15-20,22 @< 3.0
> zoom 0.75
moved plane near -69.44798057386386 [-0.36948623 0.69372777 0.61824075]
moved plane far -69.44798057386386 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.1-7,10-13,15-20,22
> select #!1.5.1-7,10-13,15-20,22
3692 atoms, 18 residues, 18 models selected
> view #!1.5.1-7,10-13,15-22 @< 3.0
> zoom 0.75
moved plane near -69.44799436852192 [-0.36948623 0.69372777 0.61824075]
moved plane far -69.44799436852192 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.1-7,10-13,15-22
> select #!1.5.1-7,10-13,15-22
3731 atoms, 19 residues, 19 models selected
> view #!1.5.1-7,10-13,15-23 @< 3.0
> zoom 0.75
moved plane near -69.44799436852192 [-0.36948623 0.69372777 0.61824075]
moved plane far -69.44799436852192 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.1-7,10-13,15-23
> select #!1.5.1-7,10-13,15-23
3765 atoms, 20 residues, 20 models selected
> view #!1.5.1-7,9-13,15-23 @< 3.0
> zoom 0.75
moved plane near -69.44799436852192 [-0.36948623 0.69372777 0.61824075]
moved plane far -69.44799436852192 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.1-7,9-13,15-23
> select #!1.5.1-7,9-13,15-23
3798 atoms, 21 residues, 21 models selected
> view #!1.5.1-13,15-23 @< 3.0
> zoom 0.75
moved plane near -69.44799436852192 [-0.36948623 0.69372777 0.61824075]
moved plane far -69.44799436852192 [-0.36948623 0.69372777 0.61824075]
> ~surface #1.5
> surface #!1.5.1-13,15-23
> select #!1.5.1-13,15-23
3828 atoms, 22 residues, 22 models selected
> view #1
[Repeated 2 time(s)]
> ~surface #1.2
> ~surface #1.3
> ~surface #1.5
> ~select #!1.2.14
3828 atoms, 22 residues, 44 models selected
> ~select #!1.3.14
3828 atoms, 22 residues, 44 models selected
> ~select #!1.5.1-13,15-23
22 models selected
> ~surface #1.5
> ui tool show "Find Cavities"
> kvfinder #1
23 cavities found for 25.3.14 275Y 21h.pdb #!1
25.3.14 275Y 21h.pdb Cavities
---
ID | | Volume | Area | Points
1.6.14 | | 559.44 | 439.97 | 2590
1.6.7 | | 151.85 | 143.35 | 703
1.6.11 | | 108 | 149.87 | 500
1.6.2 | | 87.26 | 125.45 | 404
1.6.10 | | 71.06 | 104.04 | 329
1.6.4 | | 56.38 | 75.88 | 261
1.6.20 | | 51.41 | 58.92 | 238
1.6.19 | | 46.66 | 69.05 | 216
1.6.12 | | 43.2 | 59.01 | 200
1.6.16 | | 39.1 | 60.87 | 181
1.6.22 | | 20.52 | 35.89 | 95
1.6.3 | | 19.22 | 35.47 | 89
1.6.5 | | 17.71 | 26.72 | 82
1.6.17 | | 16.85 | 32.3 | 78
1.6.18 | | 16.85 | 32.3 | 78
1.6.13 | | 15.98 | 25.9 | 74
1.6.6 | | 12.31 | 29.54 | 57
1.6.15 | | 12.31 | 29.54 | 57
1.6.1 | | 10.8 | 20.7 | 50
1.6.21 | | 8.42 | 14.48 | 39
1.6.23 | | 7.34 | 14.56 | 34
1.6.9 | | 7.13 | 14.78 | 33
1.6.8 | | 6.48 | 11.09 | 30
> help help:user/tools/findcavities.html#cavitylist
> ui dockable false "25.3.14 275Y 21h.pdb Cavities"
> ui dockable true "25.3.14 275Y 21h.pdb Cavities"
> view #!1.2.14 @< 3.0
> zoom 0.75
moved plane near -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
moved plane far -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
> view #!1.3.14 @< 3.0
> zoom 0.75
moved plane near -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
moved plane far -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
> view #!1.5.13 @< 3.0
> zoom 0.75
moved plane near -19.951295200194995 [-0.5271713 0.72203976 0.44805014]
moved plane far -19.951295200194995 [-0.5271713 0.72203976 0.44805014]
> view #1.6.1-13,15-23 @< 3.0
> zoom 0.75
moved plane near -82.83733167477561 [-0.5271713 0.72203976 0.44805014]
moved plane far -82.83733167477561 [-0.5271713 0.72203976 0.44805014]
> view #1
[Repeated 3 time(s)]
> ~surface #1.2
> surface #!1.2.14
> ~surface #1.3
> surface #!1.3.14
> ~surface #1.5
> surface #!1.5.13
> surface #1.6
> transparency #1.6 50
> ~surface #1.6
> surface #1.6.1-13,15-23
> view #!1.2.14 @< 3.0
> zoom 0.75
moved plane near -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
moved plane far -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
> view #!1.3.14 @< 3.0
> zoom 0.75
moved plane near -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
moved plane far -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
> view #!1.5.13 @< 3.0
> zoom 0.75
moved plane near -19.951295200194995 [-0.5271713 0.72203976 0.44805014]
moved plane far -19.951295200194995 [-0.5271713 0.72203976 0.44805014]
> view #!1.6.1-13,15-23 @< 3.0
> zoom 0.75
moved plane near -82.83733167477561 [-0.5271713 0.72203976 0.44805014]
moved plane far -82.83733167477561 [-0.5271713 0.72203976 0.44805014]
> view #1
[Repeated 3 time(s)]
> view #!1.2.14 @< 3.0
> zoom 0.75
moved plane near -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
moved plane far -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
> view #!1.3.14 @< 3.0
> zoom 0.75
moved plane near -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
moved plane far -44.75059216316779 [-0.5271713 0.72203976 0.44805014]
> view #!1.5.13 @< 3.0
> zoom 0.75
moved plane near -19.951295200194995 [-0.5271713 0.72203976 0.44805014]
moved plane far -19.951295200194995 [-0.5271713 0.72203976 0.44805014]
> view #!1.6.1-13,15-23 @< 3.0
> zoom 0.75
moved plane near -82.83733167477561 [-0.5271713 0.72203976 0.44805014]
moved plane far -82.83733167477561 [-0.5271713 0.72203976 0.44805014]
> view #1
[Repeated 3 time(s)]
> select #!1.2.14
2590 atoms, 1 residue, 1 model selected
> select #!1.3.14
2590 atoms, 1 residue, 1 model selected
> select #!1.5.13
74 atoms, 1 residue, 1 model selected
> select #!1.6.1-13,15-23
3828 atoms, 22 residues, 22 models selected
> ~surface #1.6
> surface #!1.6.1-11,13,15-23
> select #!1.6.1-11,13,15-23
3628 atoms, 21 residues, 21 models selected
> ~surface #1.6
> surface #!1.6.1-11,13,15,17-23
> select #!1.6.1-11,13,15,17-23
3447 atoms, 20 residues, 20 models selected
> ~surface #1.6
> surface #!1.6.1-11,13,15-23
> select #!1.6.1-11,13,15-23
3628 atoms, 21 residues, 21 models selected
> ~surface #1.6
> surface #!1.6.1-11,13,15-21,23
> select #!1.6.1-11,13,15-21,23
3533 atoms, 20 residues, 20 models selected
> ~surface #1.6
> surface #!1.6.1-2,4,6-11,13,15-21,23
> select #!1.6.1-2,4,6-11,13,15-21,23
3362 atoms, 18 residues, 18 models selected
> ~surface #1.6
> surface #!1.6.1-2,4,6-11,13,15-16,18-21,23
> select #!1.6.1-2,4,6-11,13,15-16,18-21,23
3284 atoms, 17 residues, 17 models selected
> ~surface #1.6
> surface #!1.6.1-2,4,6-11,15-16,18-21,23
> select #!1.6.1-2,4,6-11,15-16,18-21,23
3210 atoms, 16 residues, 16 models selected
> ui tool show "Find Cavities"
> kvfinder #1
23 cavities found for 25.3.14 275Y 21h.pdb #!1
25.3.14 275Y 21h.pdb Cavities
---
ID | | Volume | Area | Points
1.7.14 | | 559.44 | 439.97 | 2590
1.7.7 | | 151.85 | 143.35 | 703
1.7.11 | | 108 | 149.87 | 500
1.7.2 | | 87.26 | 125.45 | 404
1.7.10 | | 71.06 | 104.04 | 329
1.7.4 | | 56.38 | 75.88 | 261
1.7.20 | | 51.41 | 58.92 | 238
1.7.19 | | 46.66 | 69.05 | 216
1.7.12 | | 43.2 | 59.01 | 200
1.7.16 | | 39.1 | 60.87 | 181
1.7.22 | | 20.52 | 35.89 | 95
1.7.3 | | 19.22 | 35.47 | 89
1.7.5 | | 17.71 | 26.72 | 82
1.7.17 | | 16.85 | 32.3 | 78
1.7.18 | | 16.85 | 32.3 | 78
1.7.13 | | 15.98 | 25.9 | 74
1.7.6 | | 12.31 | 29.54 | 57
1.7.15 | | 12.31 | 29.54 | 57
1.7.1 | | 10.8 | 20.7 | 50
1.7.21 | | 8.42 | 14.48 | 39
1.7.23 | | 7.34 | 14.56 | 34
1.7.9 | | 7.13 | 14.78 | 33
1.7.8 | | 6.48 | 11.09 | 30
> surface #1.7
> transparency #1.7 50
> ~surface #1.7
> surface #1.7.7
> select #1.7.7
703 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.7,11
> select #!1.7.7,11
1203 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.2,4,7,10-11
> select #!1.7.2,4,7,10-11
2197 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.2,4,7,10-11,19-20
> select #!1.7.2,4,7,10-11,19-20
2651 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.2,4,7,10-12,16,19-20
> select #!1.7.2,4,7,10-12,16,19-20
3032 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.2-5,7,10-12,16-20,22
> select #!1.7.2-5,7,10-12,16-20,22
3454 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.2-5,7,10-13,16-20,22
> select #!1.7.2-5,7,10-13,16-20,22
3528 atoms, 15 residues, 15 models selected
> ~surface #1.7
> surface #!1.7.2-5,7,10-13,15-20,22
> select #!1.7.2-5,7,10-13,15-20,22
3585 atoms, 16 residues, 16 models selected
> ~surface #1.7
> surface #!1.7.2-7,10-13,15-20,22
> select #!1.7.2-7,10-13,15-20,22
3642 atoms, 17 residues, 17 models selected
> ~surface #1.7
> surface #!1.7.1-7,10-13,15-20,22
> select #!1.7.1-7,10-13,15-20,22
3692 atoms, 18 residues, 18 models selected
> ~surface #1.7
> surface #!1.7.1-7,10-13,15-22
> select #!1.7.1-7,10-13,15-22
3731 atoms, 19 residues, 19 models selected
> ~surface #1.7
> surface #!1.7.1-7,10-13,15-23
> select #!1.7.1-7,10-13,15-23
3765 atoms, 20 residues, 20 models selected
> ~surface #1.7
> surface #!1.7.1-7,9-13,15-23
> select #!1.7.1-7,9-13,15-23
3798 atoms, 21 residues, 21 models selected
> ~surface #1.7
> surface #!1.7.1-13,15-23
> select #!1.7.1-13,15-23
3828 atoms, 22 residues, 22 models selected
> surface hidePatches (#!1.7.1-13,15-23 & sel)
[Repeated 1 time(s)]
> surface (#!1.7.1-13,15-23 & sel)
> cartoon hide (#!1.7.1-13,15-23 & sel)
> ~label (#!1.7.1-13,15-23 & sel) residues
> delete atoms (#!1.7.1-13,15-23 & sel)
> ~surface #1.7
> surface #!1.7.1,3-13,15-23
> select #!1.7.1,3-13,15-23
3424 atoms, 21 residues, 21 models selected
> ~surface #1.7
> surface #!1.7.15
> select #!1.7.15
57 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.1,15
> select #!1.7.1,15
107 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.1,4,15
> select #!1.7.1,4,15
368 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.1,4,15,17
> select #!1.7.1,4,15,17
446 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.1,4,15,17,21
> select #!1.7.1,4,15,17,21
485 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.1,4,10,15,17,21
> select #!1.7.1,4,10,15,17,21
814 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.1,4,10,15,17-18,21
> select #!1.7.1,4,10,15,17-18,21
892 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.1,4,10,13,15,17-18,21
> select #!1.7.1,4,10,13,15,17-18,21
966 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.1,4,10-11,13,15,17-18,21
> select #!1.7.1,4,10-11,13,15,17-18,21
1466 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.1,4,10-11,13,15,17-18,20-21
> select #!1.7.1,4,10-11,13,15,17-18,20-21
1704 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.1,4,10-11,13,15,17-21
> select #!1.7.1,4,10-11,13,15,17-21
1920 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.1,4-5,10-11,13,15,17-21
> select #!1.7.1,4-5,10-11,13,15,17-21
2002 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.1,4-5,10-13,15,17-21
> select #!1.7.1,4-5,10-13,15,17-21
2202 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.1,4-5,10-13,15,17-21,23
> select #!1.7.1,4-5,10-13,15,17-21,23
2236 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.1,4-5,10-13,15-21,23
> select #!1.7.1,4-5,10-13,15-21,23
2417 atoms, 15 residues, 15 models selected
> ~surface #1.7
> surface #!1.7.1,3-5,10-13,15-21,23
> select #!1.7.1,3-5,10-13,15-21,23
2506 atoms, 16 residues, 16 models selected
> ~surface #1.7
> surface #!1.7.1,3-5,7,10-13,15-21,23
> select #!1.7.1,3-5,7,10-13,15-21,23
3209 atoms, 17 residues, 17 models selected
> ~surface #1.7
> surface #!1.7.1,3-7,10-13,15-21,23
> select #!1.7.1,3-7,10-13,15-21,23
3266 atoms, 18 residues, 18 models selected
> ~surface #1.7
> surface #!1.7.1,3-7,9-13,15-21,23
> select #!1.7.1,3-7,9-13,15-21,23
3299 atoms, 19 residues, 19 models selected
> ~surface #1.7
> surface #!1.7.1,3-7,9-13,15-23
> select #!1.7.1,3-7,9-13,15-23
3394 atoms, 20 residues, 20 models selected
> ~surface #1.7
> surface #!1.7.1,3-13,15-23
> select #!1.7.1,3-13,15-23
3424 atoms, 21 residues, 21 models selected
> ~surface #1.7
> surface #!1.7.1,3-13,15-23
> select #!1.7.1,3-13,15-23
3424 atoms, 21 residues, 21 models selected
> ~surface #1.7
> surface #!1.7.1,3-5,7-13,15-23
> select #!1.7.1,3-5,7-13,15-23
3367 atoms, 20 residues, 20 models selected
> ~surface #1.7
> surface #!1.7.15
> select #!1.7.15
57 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.1,15
> select #!1.7.1,15
107 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.1,4,15
> select #!1.7.1,4,15
368 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.1,4,15,17
> select #!1.7.1,4,15,17
446 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.1,4,15,17,21
> select #!1.7.1,4,15,17,21
485 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.1,4,10,15,17,21
> select #!1.7.1,4,10,15,17,21
814 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.1,4,10,15,17-18,21
> select #!1.7.1,4,10,15,17-18,21
892 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.1,4,10,13,15,17-18,21
> select #!1.7.1,4,10,13,15,17-18,21
966 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.1,4,10-11,13,15,17-18,21
> select #!1.7.1,4,10-11,13,15,17-18,21
1466 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.1,4,10-11,13,15,17-18,20-21
> select #!1.7.1,4,10-11,13,15,17-18,20-21
1704 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.1,4,10-11,13,15,17-21
> select #!1.7.1,4,10-11,13,15,17-21
1920 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.1,4-5,10-11,13,15,17-21
> select #!1.7.1,4-5,10-11,13,15,17-21
2002 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.1,4-5,10-13,15,17-21
> select #!1.7.1,4-5,10-13,15,17-21
2202 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.1,4-5,10-13,15,17-21,23
> select #!1.7.1,4-5,10-13,15,17-21,23
2236 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.1,4-5,10-13,15-21,23
> select #!1.7.1,4-5,10-13,15-21,23
2417 atoms, 15 residues, 15 models selected
> ~surface #1.7
> surface #!1.7.1,3-5,10-13,15-21,23
> select #!1.7.1,3-5,10-13,15-21,23
2506 atoms, 16 residues, 16 models selected
> ~surface #1.7
> surface #!1.7.1,3-5,7,10-13,15-21,23
> select #!1.7.1,3-5,7,10-13,15-21,23
3209 atoms, 17 residues, 17 models selected
> ~surface #1.7
> surface #!1.7.1,3-5,7,9-13,15-21,23
> select #!1.7.1,3-5,7,9-13,15-21,23
3242 atoms, 18 residues, 18 models selected
> ~surface #1.7
> surface #!1.7.1,3-5,7,9-13,15-23
> select #!1.7.1,3-5,7,9-13,15-23
3337 atoms, 19 residues, 19 models selected
> ~surface #1.7
> surface #!1.7.1,3-5,7-13,15-23
> select #!1.7.1,3-5,7-13,15-23
3367 atoms, 20 residues, 20 models selected
> ~surface #1.7
> surface #!1.7.1,3-5,7-13,15-23
> select #!1.7.1,3-5,7-13,15-23
3367 atoms, 20 residues, 20 models selected
> ~surface #1.7
> surface #!1.7.1,3,5,7-13,15-23
> select #!1.7.1,3,5,7-13,15-23
3106 atoms, 19 residues, 19 models selected
> ~surface #1.7
> surface #!1.7.15
> select #!1.7.15
57 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.1,15
> select #!1.7.1,15
107 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.1,15,17
> select #!1.7.1,15,17
185 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.1,15,17,21
> select #!1.7.1,15,17,21
224 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.1,10,15,17,21
> select #!1.7.1,10,15,17,21
553 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.1,10,15,17-18,21
> select #!1.7.1,10,15,17-18,21
631 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.1,10-11,15,17-18,21
> select #!1.7.1,10-11,15,17-18,21
1131 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.1,10-11,15,17-18,20-21
> select #!1.7.1,10-11,15,17-18,20-21
1369 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.1,10-11,15,17-21
> select #!1.7.1,10-11,15,17-21
1585 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.1,5,10-11,15,17-21
> select #!1.7.1,5,10-11,15,17-21
1667 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.1,5,10-12,15,17-21
> select #!1.7.1,5,10-12,15,17-21
1867 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.1,5,10-12,15,17-21,23
> select #!1.7.1,5,10-12,15,17-21,23
1901 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.1,5,10-12,15-21,23
> select #!1.7.1,5,10-12,15-21,23
2082 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.1,3,5,10-12,15-21,23
> select #!1.7.1,3,5,10-12,15-21,23
2171 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.1,3,5,7,10-12,15-21,23
> select #!1.7.1,3,5,7,10-12,15-21,23
2874 atoms, 15 residues, 15 models selected
> ~surface #1.7
> surface #!1.7.1,3,5,7-8,10-12,15-21,23
> select #!1.7.1,3,5,7-8,10-12,15-21,23
2904 atoms, 16 residues, 16 models selected
> ~surface #1.7
> surface #!1.7.1,3,5,7-12,15-21,23
> select #!1.7.1,3,5,7-12,15-21,23
2937 atoms, 17 residues, 17 models selected
> ~surface #1.7
> surface #!1.7.1,3,5,7-12,15-23
> select #!1.7.1,3,5,7-12,15-23
3032 atoms, 18 residues, 18 models selected
> ~surface #1.7
> surface #!1.7.1,3,5,7-13,15-23
> select #!1.7.1,3,5,7-13,15-23
3106 atoms, 19 residues, 19 models selected
> ~surface #1.7
> surface #!1.7.1,3,5,7-13,15-23
> select #!1.7.1,3,5,7-13,15-23
3106 atoms, 19 residues, 19 models selected
> ~surface #1.7
> surface #!1.7.3,5,7-13,15-23
> select #!1.7.3,5,7-13,15-23
3056 atoms, 18 residues, 18 models selected
> ~surface #1.7
> surface #!1.7.7
> select #!1.7.7
703 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.7,17
> select #!1.7.7,17
781 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.7,17,21
> select #!1.7.7,17,21
820 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.7-8,17,21
> select #!1.7.7-8,17,21
850 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.7-8,15,17,21
> select #!1.7.7-8,15,17,21
907 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.7-8,15,17-18,21
> select #!1.7.7-8,15,17-18,21
985 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.7-8,15,17-19,21
> select #!1.7.7-8,15,17-19,21
1201 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.7-8,13,15,17-19,21
> select #!1.7.7-8,13,15,17-19,21
1275 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.7-8,13,15-19,21
> select #!1.7.7-8,13,15-19,21
1456 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.5,7-8,13,15-19,21
> select #!1.7.5,7-8,13,15-19,21
1538 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.5,7-9,13,15-19,21
> select #!1.7.5,7-9,13,15-19,21
1571 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.5,7-10,13,15-19,21
> select #!1.7.5,7-10,13,15-19,21
1900 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.5,7-10,12-13,15-19,21
> select #!1.7.5,7-10,12-13,15-19,21
2100 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.5,7-13,15-19,21
> select #!1.7.5,7-13,15-19,21
2600 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.5,7-13,15-19,21-22
> select #!1.7.5,7-13,15-19,21-22
2695 atoms, 15 residues, 15 models selected
> ~surface #1.7
> surface #!1.7.5,7-13,15-19,21-23
> select #!1.7.5,7-13,15-19,21-23
2729 atoms, 16 residues, 16 models selected
> ~surface #1.7
> surface #!1.7.3,5,7-13,15-19,21-23
> select #!1.7.3,5,7-13,15-19,21-23
2818 atoms, 17 residues, 17 models selected
> ~surface #1.7
> surface #!1.7.3,5,7-13,15-23
> select #!1.7.3,5,7-13,15-23
3056 atoms, 18 residues, 18 models selected
> ~surface #1.7
> surface #!1.7.3,5,7-13,15-23
> select #!1.7.3,5,7-13,15-23
3056 atoms, 18 residues, 18 models selected
> ~surface #1.7
> surface #!1.7.5,7-13,15-23
> select #!1.7.5,7-13,15-23
2967 atoms, 17 residues, 17 models selected
> ~surface #1.7
> surface #!1.7.7
> select #!1.7.7
703 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.7,17
> select #!1.7.7,17
781 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.7,17,21
> select #!1.7.7,17,21
820 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.7,15,17,21
> select #!1.7.7,15,17,21
877 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.7,15,17-18,21
> select #!1.7.7,15,17-18,21
955 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.7,15,17-19,21
> select #!1.7.7,15,17-19,21
1171 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.7,13,15,17-19,21
> select #!1.7.7,13,15,17-19,21
1245 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.7,13,15-19,21
> select #!1.7.7,13,15-19,21
1426 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.7,9,13,15-19,21
> select #!1.7.7,9,13,15-19,21
1459 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,13,15-19,21
> select #!1.7.7,9-10,13,15-19,21
1788 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.5,7,9-10,13,15-19,21
> select #!1.7.5,7,9-10,13,15-19,21
1870 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.5,7,9-10,12-13,15-19,21
> select #!1.7.5,7,9-10,12-13,15-19,21
2070 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.5,7,9-13,15-19,21
> select #!1.7.5,7,9-13,15-19,21
2570 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.5,7,9-13,15-19,21-22
> select #!1.7.5,7,9-13,15-19,21-22
2665 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.5,7,9-13,15-19,21-23
> select #!1.7.5,7,9-13,15-19,21-23
2699 atoms, 15 residues, 15 models selected
> ~surface #1.7
> surface #!1.7.5,7-13,15-19,21-23
> select #!1.7.5,7-13,15-19,21-23
2729 atoms, 16 residues, 16 models selected
> ~surface #1.7
> surface #!1.7.5,7-13,15-23
> select #!1.7.5,7-13,15-23
2967 atoms, 17 residues, 17 models selected
> ~surface #1.7
> surface #!1.7.5,7-13,15-23
> select #!1.7.5,7-13,15-23
2967 atoms, 17 residues, 17 models selected
> ~surface #1.7
> surface #!1.7.7-13,15-23
> select #!1.7.7-13,15-23
2885 atoms, 16 residues, 16 models selected
> ~surface #1.7
> surface #!1.7.7
> select #!1.7.7
703 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.7,17
> select #!1.7.7,17
781 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.7,17,21
> select #!1.7.7,17,21
820 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.7,15,17,21
> select #!1.7.7,15,17,21
877 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.7,15,17-18,21
> select #!1.7.7,15,17-18,21
955 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.7,15,17-19,21
> select #!1.7.7,15,17-19,21
1171 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.7,13,15,17-19,21
> select #!1.7.7,13,15,17-19,21
1245 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.7,13,15-19,21
> select #!1.7.7,13,15-19,21
1426 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.7,9,13,15-19,21
> select #!1.7.7,9,13,15-19,21
1459 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,13,15-19,21
> select #!1.7.7,9-10,13,15-19,21
1788 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,12-13,15-19,21
> select #!1.7.7,9-10,12-13,15-19,21
1988 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,12-13,15-19,21-22
> select #!1.7.7,9-10,12-13,15-19,21-22
2083 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.7,9-13,15-19,21-22
> select #!1.7.7,9-13,15-19,21-22
2583 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.7,9-13,15-19,21-23
> select #!1.7.7,9-13,15-19,21-23
2617 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.7-13,15-19,21-23
> select #!1.7.7-13,15-19,21-23
2647 atoms, 15 residues, 15 models selected
> ~surface #1.7
> surface #!1.7.7-13,15-23
> select #!1.7.7-13,15-23
2885 atoms, 16 residues, 16 models selected
> ~surface #1.7
> surface #!1.7.7-13,15-23
> select #!1.7.7-13,15-23
2885 atoms, 16 residues, 16 models selected
> ~surface #1.7
> surface #!1.7.7-10,12-13,15-23
> select #!1.7.7-10,12-13,15-23
2385 atoms, 15 residues, 15 models selected
> ~surface #1.7
> surface #!1.7.7
> select #!1.7.7
703 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.7,17
> select #!1.7.7,17
781 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.7,17,21
> select #!1.7.7,17,21
820 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.7,15,17,21
> select #!1.7.7,15,17,21
877 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.7,15,17-18,21
> select #!1.7.7,15,17-18,21
955 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.7,15,17-19,21
> select #!1.7.7,15,17-19,21
1171 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.7,15-19,21
> select #!1.7.7,15-19,21
1352 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.7,12,15-19,21
> select #!1.7.7,12,15-19,21
1552 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.7,9,12,15-19,21
> select #!1.7.7,9,12,15-19,21
1585 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,12,15-19,21
> select #!1.7.7,9-10,12,15-19,21
1914 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,12,15-19,21-22
> select #!1.7.7,9-10,12,15-19,21-22
2009 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,12-13,15-19,21-22
> select #!1.7.7,9-10,12-13,15-19,21-22
2083 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,12-13,15-19,21-23
> select #!1.7.7,9-10,12-13,15-19,21-23
2117 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.7-10,12-13,15-19,21-23
> select #!1.7.7-10,12-13,15-19,21-23
2147 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.7-10,12-13,15-23
> select #!1.7.7-10,12-13,15-23
2385 atoms, 15 residues, 15 models selected
> ~surface #1.7
> surface #!1.7.7-10,12-13,15-23
> select #!1.7.7-10,12-13,15-23
2385 atoms, 15 residues, 15 models selected
> ~surface #1.7
> surface #!1.7.7-10,13,15-23
> select #!1.7.7-10,13,15-23
2185 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.7
> select #!1.7.7
703 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.7,17
> select #!1.7.7,17
781 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.7,17,21
> select #!1.7.7,17,21
820 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.7-8,17,21
> select #!1.7.7-8,17,21
850 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.7-8,15,17,21
> select #!1.7.7-8,15,17,21
907 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.7-8,15,17,19,21
> select #!1.7.7-8,15,17,19,21
1123 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.7-9,15,17,19,21
> select #!1.7.7-9,15,17,19,21
1156 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.7-10,15,17,19,21
> select #!1.7.7-10,15,17,19,21
1485 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.7-10,15,17-19,21
> select #!1.7.7-10,15,17-19,21
1563 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.7-10,15,17-19,21-22
> select #!1.7.7-10,15,17-19,21-22
1658 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.7-10,15-19,21-22
> select #!1.7.7-10,15-19,21-22
1839 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.7-10,15-19,21-23
> select #!1.7.7-10,15-19,21-23
1873 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.7-10,13,15-19,21-23
> select #!1.7.7-10,13,15-19,21-23
1947 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.7-10,13,15-23
> select #!1.7.7-10,13,15-23
2185 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.7-10,13,15-23
> select #!1.7.7-10,13,15-23
2185 atoms, 14 residues, 14 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,13,15-23
> select #!1.7.7,9-10,13,15-23
2155 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.7
> select #!1.7.7
703 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.7,17
> select #!1.7.7,17
781 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.7,17,21
> select #!1.7.7,17,21
820 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.7,15,17,21
> select #!1.7.7,15,17,21
877 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.7,15,17,19,21
> select #!1.7.7,15,17,19,21
1093 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.7,9,15,17,19,21
> select #!1.7.7,9,15,17,19,21
1126 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,15,17,19,21
> select #!1.7.7,9-10,15,17,19,21
1455 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,15,17-19,21
> select #!1.7.7,9-10,15,17-19,21
1533 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,15,17-19,21-22
> select #!1.7.7,9-10,15,17-19,21-22
1628 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,15-19,21-22
> select #!1.7.7,9-10,15-19,21-22
1809 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,15-19,21-23
> select #!1.7.7,9-10,15-19,21-23
1843 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,13,15-19,21-23
> select #!1.7.7,9-10,13,15-19,21-23
1917 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,13,15-23
> select #!1.7.7,9-10,13,15-23
2155 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.7,9-10,13,15-23
> select #!1.7.7,9-10,13,15-23
2155 atoms, 13 residues, 13 models selected
> ~surface #1.7
> surface #!1.7.7,10,13,15-23
> select #!1.7.7,10,13,15-23
2122 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.7
> select #!1.7.7
703 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.7,17
> select #!1.7.7,17
781 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.7,17,21
> select #!1.7.7,17,21
820 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.7,15,17,21
> select #!1.7.7,15,17,21
877 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.7,15,17,19,21
> select #!1.7.7,15,17,19,21
1093 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.7,10,15,17,19,21
> select #!1.7.7,10,15,17,19,21
1422 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.7,10,15,17,19,21-22
> select #!1.7.7,10,15,17,19,21-22
1517 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.7,10,15,17-19,21-22
> select #!1.7.7,10,15,17-19,21-22
1595 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.7,10,15,17-19,21-23
> select #!1.7.7,10,15,17-19,21-23
1629 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.7,10,15-19,21-23
> select #!1.7.7,10,15-19,21-23
1810 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.7,10,13,15-19,21-23
> select #!1.7.7,10,13,15-19,21-23
1884 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.7,10,13,15-23
> select #!1.7.7,10,13,15-23
2122 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.7,10,13,15-23
> select #!1.7.7,10,13,15-23
2122 atoms, 12 residues, 12 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-23
> select #!1.7.10,13,15-23
1419 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.17
> select #!1.7.17
78 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.17,21
> select #!1.7.17,21
117 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.15,17,21
> select #!1.7.15,17,21
174 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.15,17,19,21
> select #!1.7.15,17,19,21
390 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.10,15,17,19,21
> select #!1.7.10,15,17,19,21
719 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.10,15,17,19,21-22
> select #!1.7.10,15,17,19,21-22
814 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.10,15,17-19,21-22
> select #!1.7.10,15,17-19,21-22
892 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.10,15,17-19,21-23
> select #!1.7.10,15,17-19,21-23
926 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.10,15-19,21-23
> select #!1.7.10,15-19,21-23
1107 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-19,21-23
> select #!1.7.10,13,15-19,21-23
1181 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-23
> select #!1.7.10,13,15-23
1419 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-23
> select #!1.7.10,13,15-23
1419 atoms, 11 residues, 11 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,20-23
> select #!1.7.10,13,15-18,20-23
1203 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.17
> select #!1.7.17
78 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.17,21
> select #!1.7.17,21
117 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.15,17,21
> select #!1.7.15,17,21
174 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.10,15,17,21
> select #!1.7.10,15,17,21
503 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.10,15,17,21-22
> select #!1.7.10,15,17,21-22
598 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.10,15,17-18,21-22
> select #!1.7.10,15,17-18,21-22
676 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.10,15,17-18,21-23
> select #!1.7.10,15,17-18,21-23
710 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.10,15-18,21-23
> select #!1.7.10,15-18,21-23
891 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,21-23
> select #!1.7.10,13,15-18,21-23
965 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,20-23
> select #!1.7.10,13,15-18,20-23
1203 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,20-23
> select #!1.7.10,13,15-18,20-23
1203 atoms, 10 residues, 10 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,21-23
> select #!1.7.10,13,15-18,21-23
965 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.17
> select #!1.7.17
78 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.17,21
> select #!1.7.17,21
117 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.15,17,21
> select #!1.7.15,17,21
174 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.10,15,17,21
> select #!1.7.10,15,17,21
503 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.10,15,17,21-22
> select #!1.7.10,15,17,21-22
598 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.10,15,17-18,21-22
> select #!1.7.10,15,17-18,21-22
676 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.10,15,17-18,21-23
> select #!1.7.10,15,17-18,21-23
710 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.10,15-18,21-23
> select #!1.7.10,15-18,21-23
891 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,21-23
> select #!1.7.10,13,15-18,21-23
965 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,21-23
> select #!1.7.10,13,15-18,21-23
965 atoms, 9 residues, 9 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,22-23
> select #!1.7.10,13,15-18,22-23
926 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.17
> select #!1.7.17
78 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.15,17
> select #!1.7.15,17
135 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.10,15,17
> select #!1.7.10,15,17
464 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.10,15,17,22
> select #!1.7.10,15,17,22
559 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.10,15,17-18,22
> select #!1.7.10,15,17-18,22
637 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.10,15,17-18,22-23
> select #!1.7.10,15,17-18,22-23
671 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.10,15-18,22-23
> select #!1.7.10,15-18,22-23
852 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,22-23
> select #!1.7.10,13,15-18,22-23
926 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,22-23
> select #!1.7.10,13,15-18,22-23
926 atoms, 8 residues, 8 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,23
> select #!1.7.10,13,15-18,23
831 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.17
> select #!1.7.17
78 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.15,17
> select #!1.7.15,17
135 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.10,15,17
> select #!1.7.10,15,17
464 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.10,15,17,23
> select #!1.7.10,15,17,23
498 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.10,15,17-18,23
> select #!1.7.10,15,17-18,23
576 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.10,15-18,23
> select #!1.7.10,15-18,23
757 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,23
> select #!1.7.10,13,15-18,23
831 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18,23
> select #!1.7.10,13,15-18,23
831 atoms, 7 residues, 7 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18
> select #!1.7.10,13,15-18
797 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.17
> select #!1.7.17
78 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.15,17
> select #!1.7.15,17
135 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.10,15,17
> select #!1.7.10,15,17
464 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.10,15,17-18
> select #!1.7.10,15,17-18
542 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.10,15-18
> select #!1.7.10,15-18
723 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18
> select #!1.7.10,13,15-18
797 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.10,13,15-18
> select #!1.7.10,13,15-18
797 atoms, 6 residues, 6 models selected
> ~surface #1.7
> surface #!1.7.10,13,16-18
> select #!1.7.10,13,16-18
740 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.17
> select #!1.7.17
78 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.10,17
> select #!1.7.10,17
407 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.10,17-18
> select #!1.7.10,17-18
485 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.10,16-18
> select #!1.7.10,16-18
666 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.10,13,16-18
> select #!1.7.10,13,16-18
740 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.10,13,16-18
> select #!1.7.10,13,16-18
740 atoms, 5 residues, 5 models selected
> ~surface #1.7
> surface #!1.7.10,13,17-18
> select #!1.7.10,13,17-18
559 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.13
> select #!1.7.13
74 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.13,17
> select #!1.7.13,17
152 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.10,13,17
> select #!1.7.10,13,17
481 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.10,13,17-18
> select #!1.7.10,13,17-18
559 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.10,13,17-18
> select #!1.7.10,13,17-18
559 atoms, 4 residues, 4 models selected
> ~surface #1.7
> surface #!1.7.10,13,18
> select #!1.7.10,13,18
481 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.13
> select #!1.7.13
74 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.10,13
> select #!1.7.10,13
403 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.10,13,18
> select #!1.7.10,13,18
481 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.10,13,18
> select #!1.7.10,13,18
481 atoms, 3 residues, 3 models selected
> ~surface #1.7
> surface #!1.7.10,13
> select #!1.7.10,13
403 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.13
> select #!1.7.13
74 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.10,13
> select #!1.7.10,13
403 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.10,13
> select #!1.7.10,13
403 atoms, 2 residues, 2 models selected
> ~surface #1.7
> surface #!1.7.10
> select #!1.7.10
329 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.10
> select #!1.7.10
329 atoms, 1 residue, 1 model selected
> ~surface #1.7
> surface #!1.7.10
> select #!1.7.10
329 atoms, 1 residue, 1 model selected
> delete bonds (#!1.7.1-13,15-23 & sel)
> ~surface #1.7
> surface #!1.7.14
> select #!1.7.14
2590 atoms, 1 residue, 1 model selected
> surface (#!1.7.14 & sel)
> transparency (#!1.7.14 & sel) 70
> save "/Users/gulhabib/Documents/CryoEM/25.3.16 画图/edited/cavity all.cxs"
——— End of log from Thu Mar 20 17:02:46 2025 ———
opened ChimeraX session
OpenGL version: 4.1 Metal - 89.3
OpenGL renderer: Apple M3
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac15,3
Model Number: MTL73CH/A
Chip: Apple M3
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 8 GB
System Firmware Version: 11881.81.4
OS Loader Version: 11881.81.4
Software:
System Software Overview:
System Version: macOS 15.3.2 (24D81)
Kernel Version: Darwin 24.3.0
Time since boot: 6 days, 6 hours, 5 minutes
Graphics/Displays:
Apple M3:
Chipset Model: Apple M3
Type: GPU
Bus: Built-In
Total Number of Cores: 10
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Mi Monitor:
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 2560 x 1440 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 1.0.0
annotated-types: 0.7.0
anyio: 4.7.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.1.0
autocommand: 2.2.2
babel: 2.16.0
backports.tarfile: 1.2.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-ArtiaX: 0.6.0
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-Clipper: 0.24.0
ChimeraX-clix: 0.1.10
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMalign: 0.1.3
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-GenomeTools: 0.9
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ISOLDE: 1.9
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-LigandRecognizer: 0.2
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NIHPresets: 1.2.7
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
finufft: 2.3.1
fonttools: 4.55.3
funcparserlib: 2.0.0a0
geomdl: 5.3.1
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
importlib_metadata: 8.0.0
importlib_resources: 6.4.0
inflect: 7.3.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jaraco.context: 5.3.0
jaraco.functools: 4.0.1
jaraco.text: 3.12.1
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.10.0
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
MolecularDynamicsViewer: 1.6
more-itertools: 10.3.0
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
numpy: 1.26.4
openvr: 1.26.701
ordered-set: 4.1.0
packaging: 23.2
packaging: 24.1
pandas: 2.2.3
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
platformdirs: 4.2.2
plotly: 5.24.1
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pyarrow: 19.0.1
pycollada: 0.8
pydantic: 2.10.6
pydantic_core: 2.27.2
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pyKVFinder: 0.7.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
Send2Trash: 1.8.3
SEQCROW: 1.8.18
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
starfile: 0.5.12
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tenacity: 9.0.0
tifffile: 2024.7.24
tinyarray: 1.2.4
toml: 0.10.2
tomli: 2.0.1
tornado: 6.4.2
traitlets: 5.14.3
typeguard: 4.3.0
typing_extensions: 4.12.2
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
zipp: 3.19.2
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