![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 10 months ago
Last modified 10 months ago
#16553 closed defect
ChimeraX bug report submission — at Initial Version
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.1.1-arm64-arm-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00000001fac23840 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 315 in event_loop
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1003 in init
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1166 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, chimerax.pdb_lib._load_libs, chimerax.surface._surface, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, lxml._elementpath, lxml.etree, PIL._imagingmath, psutil._psutil_osx, psutil._psutil_posix, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.pdb._pdbio, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, scipy._lib._ccallback_c, scipy.linalg._fblas, scipy.linalg._flapack, scipy.linalg.cython_lapack, scipy.linalg._cythonized_array_utils, scipy.linalg._solve_toeplitz, scipy.linalg._decomp_lu_cython, scipy.linalg._matfuncs_sqrtm_triu, scipy.linalg.cython_blas, scipy.linalg._matfuncs_expm, scipy.linalg._decomp_update, scipy.sparse._sparsetools, _csparsetools, scipy.sparse._csparsetools, scipy.sparse.linalg._dsolve._superlu, scipy.sparse.linalg._eigen.arpack._arpack, scipy.sparse.linalg._propack._spropack, scipy.sparse.linalg._propack._dpropack, scipy.sparse.linalg._propack._cpropack, scipy.sparse.linalg._propack._zpropack, scipy.sparse.csgraph._tools, scipy.sparse.csgraph._shortest_path, scipy.sparse.csgraph._traversal, scipy.sparse.csgraph._min_spanning_tree, scipy.sparse.csgraph._flow, scipy.sparse.csgraph._matching, scipy.sparse.csgraph._reordering, scipy.optimize._minpack2, scipy.optimize._group_columns, scipy._lib.messagestream, scipy.optimize._trlib._trlib, scipy.optimize._lbfgsb, _moduleTNC, scipy.optimize._moduleTNC, scipy.optimize._cobyla, scipy.optimize._slsqp, scipy.optimize._minpack, scipy.optimize._lsq.givens_elimination, scipy.optimize._zeros, scipy.optimize._highs.cython.src._highs_wrapper, scipy.optimize._highs._highs_wrapper, scipy.optimize._highs.cython.src._highs_constants, scipy.optimize._highs._highs_constants, scipy.linalg._interpolative, scipy.optimize._bglu_dense, scipy.optimize._lsap, scipy.spatial._ckdtree, scipy.spatial._qhull, scipy.spatial._voronoi, scipy.spatial._distance_wrap, scipy.spatial._hausdorff, scipy.special._ufuncs_cxx, scipy.special._cdflib, scipy.special._ufuncs, scipy.special._specfun, scipy.special._comb, scipy.special._ellip_harm_2, scipy.spatial.transform._rotation, scipy.optimize._direct (total: 123)
{"app_name":"ChimeraX","timestamp":"2025-01-03 18:04:02.00 -0500","app_version":"1.8.0","slice_uuid":"17982d98-65bc-3327-8526-577ec996453c","build_version":"1.8.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":1,"is_first_party":0,"bug_type":"309","os_version":"macOS 15.1.1 (24B91)","roots_installed":0,"name":"ChimeraX","incident_id":"777A768E-A8A5-487C-9D86-DE8032EEC181"}
{
"uptime" : 1400000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro18,3",
"coalitionID" : 84643,
"osVersion" : {
"train" : "macOS 15.1.1",
"build" : "24B91",
"releaseType" : "User"
},
"captureTime" : "2025-01-03 18:03:56.0628 -0500",
"codeSigningMonitor" : 1,
"incident" : "777A768E-A8A5-487C-9D86-DE8032EEC181",
"pid" : 23585,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2024-12-29 13:32:05.8887 -0500",
"procStartAbsTime" : 27366718813762,
"procExitAbsTime" : 34896976175409,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"777D8A61-C81E-5246-B2B2-49ABC82B8258","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "E6A071C4-EA66-FC3F-B912-CA5E01E9CDB6",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRcuD\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkWfg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"bootSessionUUID" : "CB8C0AC1-90FC-4A08-9DE2-3CB99C8BF141",
"wakeTime" : 2,
"sleepWakeUUID" : "A977EEEF-8B0F-431D-BE84-B01F393AC5C7",
"sip" : "enabled",
"vmRegionInfo" : "0x169 is not in any region. Bytes before following region: 4300111511\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 1004e8000-1004ec000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000169","rawCodes":[1,361],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000169"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":23585},
"ktriageinfo" : "VM - (arg = 0x0) Page has error bit set\nCL - (arg = 0x0) cluster_pagein past EOF\nVM - (arg = 0x1900000016) Filesystem pagein returned an error in vnode_pagein\nVM - (arg = 0x0) Page has error bit set\nCL - (arg = 0x0) cluster_pagein past EOF\n",
"vmregioninfo" : "0x169 is not in any region. Bytes before following region: 4300111511\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 1004e8000-1004ec000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : [{"threadState":{"x":[{"value":0},{"value":0},{"value":1},{"value":4966873752},{"value":115},{"value":100},{"value":1153027057735220032},{"value":0},{"value":5109951865511690213},{"value":5109951857840162725},{"value":14757395258967641293},{"value":4294967286},{"value":4966873681},{"value":0},{"value":49},{"value":4294967280},{"value":328},{"value":8638699600},{"value":0},{"value":11},{"value":259},{"value":8501999904,"symbolLocation":224,"symbol":"_main_thread"},{"value":0},{"value":1},{"value":4318709296,"symbolLocation":0,"symbol":"faulthandler_handlers"},{"value":8468303872,"symbolLocation":0,"symbol":"OBJC_IVAR_$_NSTextView._tv_dragInfo"},{"value":8468303872,"symbolLocation":0,"symbol":"OBJC_IVAR_$_NSTextView._tv_dragInfo"},{"value":4},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806368112},"cpsr":{"value":1073745920},"fp":{"value":4966873824},"sp":{"value":4966873792},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806136320,"matchesCrashFrame":1},"far":{"value":0}},"id":12687722,"triggered":true,"name":"CrBrowserMain","queue":"com.apple.main-thread","frames":[{"imageOffset":38400,"symbol":"__pthread_kill","symbolLocation":8,"imageIndex":222},{"imageOffset":28528,"symbol":"pthread_kill","symbolLocation":288,"imageIndex":223},{"imageOffset":269336,"symbol":"raise","symbolLocation":32,"imageIndex":224},{"imageOffset":2417160,"symbol":"faulthandler_fatal_error","symbolLocation":392,"imageIndex":1},{"imageOffset":16772,"symbol":"_sigtramp","symbolLocation":56,"imageIndex":225},{"imageOffset":343184,"imageIndex":69},{"imageOffset":343184,"imageIndex":69},{"imageOffset":382556,"symbol":"_NSViewHierarchyDidChangeBackingProperties","symbolLocation":244,"imageIndex":226},{"imageOffset":11543952,"symbol":"-[NSWindow _postWindowDidChangeBackingPropertiesAndDisplayWindowForPreviousBackingScaleFactor:previousColorSpace:]","symbolLocation":192,"imageIndex":226},{"imageOffset":2078148,"symbol":"__67-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]_block_invoke","symbolLocation":448,"imageIndex":226},{"imageOffset":509532,"symbol":"NSPerformVisuallyAtomicChange","symbolLocation":108,"imageIndex":226},{"imageOffset":2077688,"symbol":"-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]","symbolLocation":96,"imageIndex":226},{"imageOffset":514980,"symbol":"-[NSWindow _setFrameCommon:display:fromServer:]","symbolLocation":2012,"imageIndex":226},{"imageOffset":11515140,"symbol":"-[NSWindow(NSScreenLayout) _setFrame:fromAdjustmentToScreen:anchorIfNeeded:animate:]","symbolLocation":1624,"imageIndex":226},{"imageOffset":3244032,"symbol":"-[NSWindow _adjustWindowToScreen]","symbolLocation":1108,"imageIndex":226},{"imageOffset":3373172,"symbol":"-[NSWindow _displayChangedSoAdjustWindows:]","symbolLocation":100,"imageIndex":226},{"imageOffset":14977328,"symbol":"___NSApplicationPerformScreenInvalidationReactions_block_invoke","symbolLocation":80,"imageIndex":226},{"imageOffset":218988,"symbol":"-[NSApplication enumerateWindowsWithOptions:usingBlock:]","symbolLocation":236,"imageIndex":226},{"imageOffset":14975536,"symbol":"___NSApplicationReactToScreenInvalidation_block_invoke","symbolLocation":1012,"imageIndex":226},{"imageOffset":14973552,"symbol":"_NSApplicationReactToScreenInvalidation","symbolLocation":308,"imageIndex":226},{"imageOffset":14974140,"symbol":"-[NSApplication(ScreenHandling) _reactToDisplayChanges:]","symbolLocation":416,"imageIndex":226},{"imageOffset":9488996,"symbol":"_NSCGSDisplayConfigurationUpdateAndInvokeObservers","symbolLocation":436,"imageIndex":226},{"imageOffset":9490252,"symbol":"_NSCGSDisplayConfigurationDidReconfigureNotificationHandler","symbolLocation":316,"imageIndex":226},{"imageOffset":46184,"symbol":"(anonymous namespace)::notify_datagram_handler(unsigned int, CGSDatagramType, void*, unsigned long, void*)","symbolLocation":932,"imageIndex":227},{"imageOffset":4257104,"symbol":"CGSDatagramReadStream::dispatchMainQueueDatagrams()","symbolLocation":228,"imageIndex":227},{"imageOffset":4256844,"symbol":"invocation function for block in CGSDatagramReadStream::mainQueueWakeup()","symbolLocation":28,"imageIndex":227},{"imageOffset":10488,"symbol":"_dispatch_call_block_and_release","symbolLocation":32,"imageIndex":228},{"imageOffset":18008,"symbol":"_dispatch_client_callout","symbolLocation":20,"imageIndex":228},{"imageOffset":77672,"symbol":"_dispatch_main_queue_drain","symbolLocation":980,"imageIndex":228},{"imageOffset":76676,"symbol":"_dispatch_main_queue_callback_4CF","symbolLocation":44,"imageIndex":228},{"imageOffset":773728,"symbol":"__CFRUNLOOP_IS_SERVICING_THE_MAIN_DISPATCH_QUEUE__","symbolLocation":16,"imageIndex":229},{"imageOffset":510540,"symbol":"__CFRunLoopRun","symbolLocation":1996,"imageIndex":229},{"imageOffset":506820,"symbol":"CFRunLoopRunSpecific","symbolLocation":588,"imageIndex":229},{"imageOffset":1097572,"symbol":"RunCurrentEventLoopInMode","symbolLocation":292,"imageIndex":230},{"imageOffset":1121620,"symbol":"ReceiveNextEventCommon","symbolLocation":636,"imageIndex":230},{"imageOffset":1121976,"symbol":"_BlockUntilNextEventMatchingListInModeWithFilter","symbolLocation":76,"imageIndex":230},{"imageOffset":240136,"symbol":"_DPSNextEvent","symbolLocation":660,"imageIndex":226},{"imageOffset":9940492,"symbol":"-[NSApplication(NSEventRouting) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]","symbolLocation":688,"imageIndex":226},{"imageOffset":187104,"symbol":"-[NSApplication run]","symbolLocation":480,"imageIndex":226},{"imageOffset":81772,"imageIndex":69},{"imageOffset":573772,"symbol":"QEventLoop::exec(QFlags)","symbolLocation":540,"imageIndex":45},{"imageOffset":535260,"symbol":"QCoreApplication::exec()","symbolLocation":112,"imageIndex":45},{"imageOffset":2507676,"symbol":"meth_QApplication_exec(_object*, _object*)","symbolLocation":96,"imageIndex":48},{"imageOffset":1004504,"symbol":"cfunction_call","symbolLocation":96,"imageIndex":1},{"imageOffset":594156,"symbol":"_PyObject_MakeTpCall","symbolLocation":128,"imageIndex":1},{"imageOffset":1789244,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":54984,"imageIndex":1},{"imageOffset":1729512,"symbol":"PyEval_EvalCode","symbolLocation":276,"imageIndex":1},{"imageOffset":1707120,"symbol":"builtin_exec","symbolLocation":428,"imageIndex":1},{"imageOffset":1007044,"symbol":"cfunction_vectorcall_FASTCALL_KEYWORDS","symbolLocation":80,"imageIndex":1},{"imageOffset":1788292,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":54032,"imageIndex":1},{"imageOffset":1811404,"symbol":"_PyEval_Vector","symbolLocation":156,"imageIndex":1},{"imageOffset":2389028,"symbol":"pymain_run_module","symbolLocation":256,"imageIndex":1},{"imageOffset":2387652,"symbol":"Py_RunMain","symbolLocation":1784,"imageIndex":1},{"imageOffset":2392180,"symbol":"pymain_main","symbolLocation":52,"imageIndex":1},{"imageOffset":2392116,"symbol":"Py_Main","symbolLocation":36,"imageIndex":1},{"imageOffset":15700,"symbol":"main","symbolLocation":128,"imageIndex":0},{"imageOffset":25204,"symbol":"start","symbolLocation":2840,"imageIndex":231}]},{"id":12687846,"name":"ThreadPoolServiceThread","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553182082752},{"value":4},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":3},{"value":126443837223682},{"value":5869341344},{"value":63747},{"value":1},{"value":1},{"value":369},{"value":6183202816},{"value":0},{"value":5461731864},{"value":4612971200},{"value":0},{"value":6183202128},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5762685368},"cpsr":{"value":2684358656},"fp":{"value":6183202112},"sp":{"value":6183202048},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806150108},"far":{"value":0}},"frames":[{"imageOffset":52188,"symbol":"kevent64","symbolLocation":8,"imageIndex":222},{"imageOffset":66705848,"imageIndex":56},{"imageOffset":66705328,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":66384288,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":12687847,"name":"ThreadPoolForegroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869442},{"value":0},{"value":272691768590336},{"value":0},{"value":272691768590336},{"value":32},{"value":33000},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":63491},{"value":2095104},{"value":2043},{"value":18446744073709551569},{"value":8638702688},{"value":0},{"value":33000},{"value":32},{"value":272691768590336},{"value":0},{"value":272691768590336},{"value":6191623440},{"value":0},{"value":17179870466},{"value":17179869442},{"value":1282}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806177232},"cpsr":{"value":4096},"fp":{"value":6191622784},"sp":{"value":6191622704},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806101556},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":222},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":222},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":222},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":222},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66429892,"imageIndex":56},{"imageOffset":66433464,"imageIndex":56},{"imageOffset":66432016,"imageIndex":56},{"imageOffset":66431744,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":12687848,"name":"ThreadPoolBackgroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869442},{"value":0},{"value":270492745334784},{"value":0},{"value":270492745334784},{"value":32},{"value":33000},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":62979},{"value":2095104},{"value":2043},{"value":18446744073709551569},{"value":8638702688},{"value":0},{"value":33000},{"value":32},{"value":270492745334784},{"value":0},{"value":270492745334784},{"value":6200044816},{"value":0},{"value":17179870466},{"value":17179869442},{"value":1282}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806177232},"cpsr":{"value":4096},"fp":{"value":6200044160},"sp":{"value":6200044080},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806101556},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":222},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":222},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":222},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":222},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66429892,"imageIndex":56},{"imageOffset":66433464,"imageIndex":56},{"imageOffset":66431884,"imageIndex":56},{"imageOffset":66431792,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":12687849,"name":"Chrome_IOThread","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553181867776},{"value":4},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":9223372036854775809},{"value":5869341392},{"value":46851},{"value":1},{"value":1},{"value":369},{"value":6208466944},{"value":0},{"value":5461658440},{"value":5373918560},{"value":0},{"value":6208466240},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5762685368},"cpsr":{"value":1610616832},"fp":{"value":6208466224},"sp":{"value":6208466160},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806150108},"far":{"value":0}},"frames":[{"imageOffset":52188,"symbol":"kevent64","symbolLocation":8,"imageIndex":222},{"imageOffset":66705848,"imageIndex":56},{"imageOffset":66705328,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":42148336,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":12687850,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":206721070923776},{"value":0},{"value":206721070923776},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":48131},{"value":1},{"value":1},{"value":18446744073709551569},{"value":6216888320},{"value":0},{"value":0},{"value":32},{"value":206721070923776},{"value":0},{"value":206721070923776},{"value":6216887376},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806177232},"cpsr":{"value":4096},"fp":{"value":6216886720},"sp":{"value":6216886640},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806101556},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":222},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":222},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":222},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":222},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66197084,"imageIndex":56},{"imageOffset":65870644,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":12687854,"name":"Chrome_InProcGpuThread","threadState":{"x":[{"value":268451845},{"value":17179869442},{"value":0},{"value":247403001151488},{"value":0},{"value":247403001151488},{"value":32},{"value":1000},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":57603},{"value":1},{"value":1},{"value":18446744073709551569},{"value":6250573824},{"value":0},{"value":1000},{"value":32},{"value":247403001151488},{"value":0},{"value":247403001151488},{"value":6250572896},{"value":0},{"value":17179870466},{"value":17179869442},{"value":1282}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806177232},"cpsr":{"value":4096},"fp":{"value":6250572240},"sp":{"value":6250572160},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806101556},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":222},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":222},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":222},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":222},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":65870544,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":12687855,"name":"Chrome_ChildIOThread","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553122119712},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":1},{"value":126443837223682},{"value":5869341488},{"value":49667},{"value":1},{"value":1},{"value":369},{"value":6258995200},{"value":0},{"value":5461750024},{"value":5439430160},{"value":0},{"value":6258994496},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5762685368},"cpsr":{"value":2684358656},"fp":{"value":6258994480},"sp":{"value":6258994416},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806150108},"far":{"value":0}},"frames":[{"imageOffset":52188,"symbol":"kevent64","symbolLocation":8,"imageIndex":222},{"imageOffset":66705848,"imageIndex":56},{"imageOffset":66705328,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":107949588,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":12687856,"name":"CompositorTileWorker1","threadState":{"x":[{"value":260},{"value":0},{"value":1280},{"value":0},{"value":0},{"value":161},{"value":0},{"value":0},{"value":6267416152},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8638699528},{"value":0},{"value":5428960456},{"value":5428960584},{"value":6267416800},{"value":0},{"value":0},{"value":1280},{"value":1281},{"value":1536},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":6267416272},"sp":{"value":6267416128},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}},"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":66586532,"imageIndex":56},{"imageOffset":99447652,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":12687857,"name":"ThreadPoolSingleThreadSharedForeground0","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":218815698829312},{"value":0},{"value":218815698829312},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":50947},{"value":4144451691},{"value":4142354427},{"value":18446744073709551569},{"value":107},{"value":0},{"value":0},{"value":32},{"value":218815698829312},{"value":0},{"value":218815698829312},{"value":6275837200},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806177232},"cpsr":{"value":4096},"fp":{"value":6275836544},"sp":{"value":6275836464},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806101556},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":222},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":222},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":222},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":222},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66429892,"imageIndex":56},{"imageOffset":66432404,"imageIndex":56},{"imageOffset":66432060,"imageIndex":56},{"imageOffset":66431816,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":12687859,"name":"VizCompositorThread","threadState":{"x":[{"value":268451845},{"value":17179869442},{"value":0},{"value":230910326734848},{"value":0},{"value":230910326734848},{"value":32},{"value":13},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":53763},{"value":1},{"value":1},{"value":18446744073709551569},{"value":6284259328},{"value":0},{"value":13},{"value":32},{"value":230910326734848},{"value":0},{"value":230910326734848},{"value":6284258400},{"value":0},{"value":17179870466},{"value":17179869442},{"value":1282}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806177232},"cpsr":{"value":4096},"fp":{"value":6284257744},"sp":{"value":6284257664},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806101556},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":222},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":222},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":222},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":222},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":65870544,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":12687860,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":229810815107072},{"value":0},{"value":229810815107072},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":53507},{"value":1},{"value":1},{"value":18446744073709551569},{"value":6292680704},{"value":0},{"value":0},{"value":32},{"value":229810815107072},{"value":0},{"value":229810815107072},{"value":6292679760},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806177232},"cpsr":{"value":4096},"fp":{"value":6292679104},"sp":{"value":6292679024},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806101556},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":222},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":222},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":222},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":222},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66197084,"imageIndex":56},{"imageOffset":65870644,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":12687864,"name":"NetworkService","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553166418016},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":2},{"value":126443837223682},{"value":5869341680},{"value":86787},{"value":1},{"value":1},{"value":369},{"value":6301102080},{"value":0},{"value":5489693352},{"value":5460630448},{"value":0},{"value":6301101424},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5762685368},"cpsr":{"value":2684358656},"fp":{"value":6301101408},"sp":{"value":6301101344},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806150108},"far":{"value":0}},"frames":[{"imageOffset":52188,"symbol":"kevent64","symbolLocation":8,"imageIndex":222},{"imageOffset":66705848,"imageIndex":56},{"imageOffset":66705328,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":12687865,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":367249768579072},{"value":0},{"value":367249768579072},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":85507},{"value":1},{"value":1},{"value":18446744073709551569},{"value":6309523456},{"value":0},{"value":0},{"value":32},{"value":367249768579072},{"value":0},{"value":367249768579072},{"value":6309522512},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806177232},"cpsr":{"value":4096},"fp":{"value":6309521856},"sp":{"value":6309521776},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806101556},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":222},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":222},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":222},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":222},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66197084,"imageIndex":56},{"imageOffset":65870644,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":12687866,"name":"ThreadPoolSingleThreadForegroundBlocking1","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":288084931379200},{"value":0},{"value":288084931379200},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":67075},{"value":72057602540058721,"symbolLocation":72057594037927937,"symbol":"OBJC_CLASS_$_NSAutoreleasePool"},{"value":8502130784,"symbolLocation":0,"symbol":"OBJC_CLASS_$_NSAutoreleasePool"},{"value":18446744073709551569},{"value":8639327464},{"value":0},{"value":0},{"value":32},{"value":288084931379200},{"value":0},{"value":288084931379200},{"value":6317944080},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806177232},"cpsr":{"value":4096},"fp":{"value":6317943424},"sp":{"value":6317943344},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806101556},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":222},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":222},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":222},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":222},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66429892,"imageIndex":56},{"imageOffset":66433464,"imageIndex":56},{"imageOffset":66432104,"imageIndex":56},{"imageOffset":66431804,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":12687891,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":316672233701376},{"value":0},{"value":316672233701376},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":73731},{"value":1},{"value":1},{"value":18446744073709551569},{"value":6328659968},{"value":0},{"value":0},{"value":32},{"value":316672233701376},{"value":0},{"value":316672233701376},{"value":6328659024},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806177232},"cpsr":{"value":4096},"fp":{"value":6328658368},"sp":{"value":6328658288},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806101556},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":222},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":222},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":222},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":222},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66197084,"imageIndex":56},{"imageOffset":65870644,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":12687962,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":260},{"value":0},{"value":1086208},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6167326408},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8638699528},{"value":0},{"value":4375109648,"symbolLocation":16,"symbol":"thread_status"},{"value":4375109712,"symbolLocation":80,"symbol":"thread_status"},{"value":6167326944},{"value":0},{"value":0},{"value":1086208},{"value":1086209},{"value":1086464},{"value":4375023616,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":6167326528},"sp":{"value":6167326384},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":12687963,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":260},{"value":0},{"value":1085952},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6167899848},{"value":0},{"value":256},{"value":1099511628034},{"value":1099511628034},{"value":256},{"value":0},{"value":1099511628032},{"value":305},{"value":8638699528},{"value":0},{"value":4375109776,"symbolLocation":144,"symbol":"thread_status"},{"value":4375109840,"symbolLocation":208,"symbol":"thread_status"},{"value":6167900384},{"value":0},{"value":0},{"value":1085952},{"value":1085953},{"value":1086208},{"value":4375023616,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":6167899968},"sp":{"value":6167899824},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":12687964,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6168473288},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8638699528},{"value":0},{"value":4375109904,"symbolLocation":272,"symbol":"thread_status"},{"value":4375109968,"symbolLocation":336,"symbol":"thread_status"},{"value":6168473824},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4375023616,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":6168473408},"sp":{"value":6168473264},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":12687965,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6169046728},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8638699528},{"value":0},{"value":4375110032,"symbolLocation":400,"symbol":"thread_status"},{"value":4375110096,"symbolLocation":464,"symbol":"thread_status"},{"value":6169047264},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4375023616,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":6169046848},"sp":{"value":6169046704},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":12687966,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6169620168},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8638699528},{"value":0},{"value":4375110160,"symbolLocation":528,"symbol":"thread_status"},{"value":4375110224,"symbolLocation":592,"symbol":"thread_status"},{"value":6169620704},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4375023616,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":6169620288},"sp":{"value":6169620144},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":12687967,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6170193608},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8638699528},{"value":0},{"value":4375110288,"symbolLocation":656,"symbol":"thread_status"},{"value":4375110352,"symbolLocation":720,"symbol":"thread_status"},{"value":6170194144},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4375023616,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":6170193728},"sp":{"value":6170193584},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":12687968,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6170767048},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8638699528},{"value":0},{"value":4375110416,"symbolLocation":784,"symbol":"thread_status"},{"value":4375110480,"symbolLocation":848,"symbol":"thread_status"},{"value":6170767584},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4375023616,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":6170767168},"sp":{"value":6170767024},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":12687989,"name":"com.apple.NSEventThread","threadState":{"x":[{"value":268451845},{"value":21592279046},{"value":8589934592},{"value":556382948425728},{"value":0},{"value":556382948425728},{"value":2},{"value":4294967295},{"value":18446744073709550527},{"value":2},{"value":0},{"value":0},{"value":0},{"value":129543},{"value":256},{"value":0},{"value":18446744073709551569},{"value":8638682040},{"value":0},{"value":4294967295},{"value":2},{"value":556382948425728},{"value":0},{"value":556382948425728},{"value":6174204008},{"value":8589934592},{"value":21592279046},{"value":21592279046},{"value":4412409862}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806177232},"cpsr":{"value":4096},"fp":{"value":6174203856},"sp":{"value":6174203776},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806101556},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":222},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":222},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":222},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":222},{"imageOffset":515804,"symbol":"__CFRunLoopServiceMachPort","symbolLocation":160,"imageIndex":229},{"imageOffset":509756,"symbol":"__CFRunLoopRun","symbolLocation":1212,"imageIndex":229},{"imageOffset":506820,"symbol":"CFRunLoopRunSpecific","symbolLocation":588,"imageIndex":229},{"imageOffset":1440652,"symbol":"_NSEventThread","symbolLocation":148,"imageIndex":226},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":12687992,"name":"MemoryInfra","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":445315094151168},{"value":0},{"value":445315094151168},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":103683},{"value":1},{"value":1},{"value":18446744073709551569},{"value":6432927744},{"value":0},{"value":0},{"value":32},{"value":445315094151168},{"value":0},{"value":445315094151168},{"value":6432926800},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806177232},"cpsr":{"value":4096},"fp":{"value":6432926144},"sp":{"value":6432926064},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806101556},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":222},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":222},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":222},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":222},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66197084,"imageIndex":56},{"imageOffset":65870644,"imageIndex":56},{"imageOffset":66336288,"imageIndex":56},{"imageOffset":66064512,"imageIndex":56},{"imageOffset":66483648,"imageIndex":56},{"imageOffset":66484032,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":12687993,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking2","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":471703373217792},{"value":0},{"value":471703373217792},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":109827},{"value":2522978476},{"value":2520879295},{"value":18446744073709551569},{"value":172},{"value":0},{"value":0},{"value":32},{"value":471703373217792},{"value":0},{"value":471703373217792},{"value":6441348368},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806177232},"cpsr":{"value":4096},"fp":{"value":6441347712},"sp":{"value":6441347632},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806101556},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":222},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":222},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":222},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":222},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66429892,"imageIndex":56},{"imageOffset":66432404,"imageIndex":56},{"imageOffset":66431928,"imageIndex":56},{"imageOffset":66431840,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":12688042,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":136568,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":233},{"imageOffset":95156600,"imageIndex":56},{"imageOffset":95160968,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":4},{"value":0},{"value":10496},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6174781096},{"value":0},{"value":2048},{"value":8796093024258},{"value":8796093024258},{"value":2048},{"value":0},{"value":8796093024256},{"value":305},{"value":8638699528},{"value":0},{"value":105553171580576},{"value":105553171580640},{"value":6174781664},{"value":0},{"value":0},{"value":10496},{"value":10496},{"value":12544},{"value":18446744073709551615},{"value":105553244673848}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":6174781216},"sp":{"value":6174781072},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":12688043,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":136568,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":233},{"imageOffset":95156600,"imageIndex":56},{"imageOffset":95160968,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":4},{"value":0},{"value":8704},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6346960552},{"value":0},{"value":2048},{"value":8796093024258},{"value":8796093024258},{"value":2048},{"value":0},{"value":8796093024256},{"value":305},{"value":8638699528},{"value":0},{"value":105553171580576},{"value":105553171580640},{"value":6346961120},{"value":0},{"value":0},{"value":8704},{"value":8704},{"value":10752},{"value":18446744073709551615},{"value":105553244383096}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":6346960672},"sp":{"value":6346960528},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":12688044,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":136568,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":233},{"imageOffset":95156600,"imageIndex":56},{"imageOffset":95160968,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":4},{"value":0},{"value":9216},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6347533992},{"value":0},{"value":2048},{"value":8796093024258},{"value":8796093024258},{"value":2048},{"value":0},{"value":8796093024256},{"value":305},{"value":8638699528},{"value":0},{"value":105553171580576},{"value":105553171580640},{"value":6347534560},{"value":0},{"value":0},{"value":9216},{"value":9216},{"value":11264},{"value":18446744073709551615},{"value":105553244594328}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":6347534112},"sp":{"value":6347533968},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":12688045,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":136568,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":233},{"imageOffset":95156600,"imageIndex":56},{"imageOffset":95160968,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":4},{"value":0},{"value":8960},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6348107432},{"value":0},{"value":2048},{"value":8796093024258},{"value":8796093024258},{"value":2048},{"value":0},{"value":8796093024256},{"value":305},{"value":8638699528},{"value":0},{"value":105553171580576},{"value":105553171580640},{"value":6348108000},{"value":0},{"value":0},{"value":8960},{"value":8960},{"value":11008},{"value":18446744073709551615},{"value":105553244299416}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":6348107552},"sp":{"value":6348107408},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":12688046,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":136568,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":233},{"imageOffset":95156600,"imageIndex":56},{"imageOffset":95160968,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":4},{"value":0},{"value":9984},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6413201064},{"value":0},{"value":2048},{"value":8796093024258},{"value":8796093024258},{"value":2048},{"value":0},{"value":8796093024256},{"value":305},{"value":8638699528},{"value":0},{"value":105553171580576},{"value":105553171580640},{"value":6413201632},{"value":0},{"value":0},{"value":9984},{"value":9984},{"value":12032},{"value":18446744073709551615},{"value":105553244680728}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":6413201184},"sp":{"value":6413201040},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":12688047,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":136568,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":233},{"imageOffset":95156600,"imageIndex":56},{"imageOffset":95160968,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":4},{"value":0},{"value":9728},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6441922216},{"value":0},{"value":2048},{"value":8796093024258},{"value":8796093024258},{"value":2048},{"value":0},{"value":8796093024256},{"value":305},{"value":8638699528},{"value":0},{"value":105553171580576},{"value":105553171580640},{"value":6441922784},{"value":0},{"value":0},{"value":9728},{"value":9728},{"value":11776},{"value":18446744073709551615},{"value":105553244594328}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":6441922336},"sp":{"value":6441922192},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":12688048,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":136568,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":233},{"imageOffset":95156600,"imageIndex":56},{"imageOffset":95160968,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":4},{"value":0},{"value":9472},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13223947944},{"value":0},{"value":2048},{"value":8796093024258},{"value":8796093024258},{"value":2048},{"value":0},{"value":8796093024256},{"value":305},{"value":8638699528},{"value":0},{"value":105553171580576},{"value":105553171580640},{"value":13223948512},{"value":0},{"value":0},{"value":9472},{"value":9472},{"value":11520},{"value":18446744073709551615},{"value":105553244589688}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":13223948064},"sp":{"value":13223947920},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":12688049,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":136568,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":233},{"imageOffset":95156600,"imageIndex":56},{"imageOffset":95160968,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":260},{"value":0},{"value":10240},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13224521384},{"value":0},{"value":2048},{"value":8796093024258},{"value":8796093024258},{"value":2048},{"value":0},{"value":8796093024256},{"value":305},{"value":8638699528},{"value":0},{"value":105553171580576},{"value":105553171580640},{"value":13224521952},{"value":0},{"value":0},{"value":10240},{"value":10240},{"value":12288},{"value":18446744073709551615},{"value":105553248310776}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":13224521504},"sp":{"value":13224521360},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":16152907,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":163},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13242068680},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8638699528},{"value":0},{"value":17814327312,"symbolLocation":16,"symbol":"thread_status"},{"value":17814327376,"symbolLocation":80,"symbol":"thread_status"},{"value":13242069216},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":17814261760,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":13242068800},"sp":{"value":13242068656},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":16152908,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":163},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13330689736},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8638699528},{"value":0},{"value":17814327440,"symbolLocation":144,"symbol":"thread_status"},{"value":17814327504,"symbolLocation":208,"symbol":"thread_status"},{"value":13330690272},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":17814261760,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":13330689856},"sp":{"value":13330689712},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":16152909,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":163},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13364752072},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8638699528},{"value":0},{"value":17814327568,"symbolLocation":272,"symbol":"thread_status"},{"value":17814327632,"symbolLocation":336,"symbol":"thread_status"},{"value":13364752608},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":17814261760,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":13364752192},"sp":{"value":13364752048},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":16152910,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":163},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13372124872},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8638699528},{"value":0},{"value":17814327696,"symbolLocation":400,"symbol":"thread_status"},{"value":17814327760,"symbolLocation":464,"symbol":"thread_status"},{"value":13372125408},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":17814261760,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":13372124992},"sp":{"value":13372124848},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":16152911,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":163},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14023159496},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8638699528},{"value":0},{"value":17814327824,"symbolLocation":528,"symbol":"thread_status"},{"value":17814327888,"symbolLocation":592,"symbol":"thread_status"},{"value":14023160032},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":17814261760,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":14023159616},"sp":{"value":14023159472},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":16152912,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":163},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14040051400},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8638699528},{"value":0},{"value":17814327952,"symbolLocation":656,"symbol":"thread_status"},{"value":17814328016,"symbolLocation":720,"symbol":"thread_status"},{"value":14040051936},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":17814261760,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":14040051520},"sp":{"value":14040051376},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":16152913,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":163},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14367485640},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8638699528},{"value":0},{"value":17814328080,"symbolLocation":784,"symbol":"thread_status"},{"value":17814328144,"symbolLocation":848,"symbol":"thread_status"},{"value":14367486176},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":17814261760,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":14367485760},"sp":{"value":14367485616},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}}},{"id":16197324,"frames":[{"imageOffset":8424,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":223}],"threadState":{"x":[{"value":13180710912},{"value":139607},{"value":13180174336},{"value":13180709760},{"value":5193732},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":13180709744},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806348008},"far":{"value":0}}},{"id":16206421,"frames":[{"imageOffset":60640,"symbol":"_dispatch_queue_wakeup","symbolLocation":208,"imageIndex":228},{"imageOffset":160296,"symbol":"_dispatch_event_loop_merge","symbolLocation":148,"imageIndex":228},{"imageOffset":94232,"symbol":"_dispatch_workloop_worker_thread","symbolLocation":512,"imageIndex":228},{"imageOffset":13272,"symbol":"_pthread_wqthread","symbolLocation":288,"imageIndex":223},{"imageOffset":8432,"symbol":"start_wqthread","symbolLocation":8,"imageIndex":223}],"threadState":{"x":[{"value":105553157199488},{"value":4},{"value":3},{"value":1},{"value":8502011944,"symbolLocation":40,"symbol":"_OS_dispatch_queue_serial_vtable"},{"value":8502011952,"symbolLocation":48,"symbol":"_OS_dispatch_queue_serial_vtable"},{"value":0},{"value":0},{"value":105553157199488},{"value":1},{"value":8502015040,"symbolLocation":0,"symbol":"_dispatch_mgr_q"},{"value":17179869184},{"value":36028797018963968},{"value":274877906945},{"value":9005137670438912},{"value":9005154850308096},{"value":0},{"value":274877906944},{"value":0},{"value":13241477616},{"value":1},{"value":105553157199488},{"value":13241477808},{"value":105553157199488},{"value":13241479392},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6804730408},"cpsr":{"value":2147487744},"fp":{"value":13241477744},"sp":{"value":13241477616},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6804630752},"far":{"value":0}}},{"id":16206424,"frames":[{"imageOffset":8424,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":223}],"threadState":{"x":[{"value":13292793856},{"value":153943},{"value":13292257280},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":13292793856},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806348008},"far":{"value":0}}},{"id":16206425,"frames":[{"imageOffset":8424,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":223}],"threadState":{"x":[{"value":13311307776},{"value":138755},{"value":13310771200},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":13311307776},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806348008},"far":{"value":0}}},{"id":16207276,"name":"ThreadPoolForegroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869442},{"value":0},{"value":704009564323840},{"value":0},{"value":704009564323840},{"value":32},{"value":33000},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":163915},{"value":2151876771},{"value":2149777535},{"value":18446744073709551569},{"value":163},{"value":0},{"value":33000},{"value":32},{"value":704009564323840},{"value":0},{"value":704009564323840},{"value":14927981840},{"value":0},{"value":17179870466},{"value":17179869442},{"value":1282}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806177232},"cpsr":{"value":4096},"fp":{"value":14927981184},"sp":{"value":14927981104},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806101556},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":222},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":222},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":222},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":222},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66429892,"imageIndex":56},{"imageOffset":66433464,"imageIndex":56},{"imageOffset":66432016,"imageIndex":56},{"imageOffset":66431744,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":16208309,"frames":[{"imageOffset":8424,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":223}],"threadState":{"x":[{"value":13184102400},{"value":147039},{"value":13183565824},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":13184102400},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806348008},"far":{"value":0}}},{"id":16208310,"frames":[{"imageOffset":8424,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":223}],"threadState":{"x":[{"value":13240610816},{"value":144515},{"value":13240074240},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":13240610816},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806348008},"far":{"value":0}}},{"id":16208311,"frames":[{"imageOffset":8424,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":223}],"threadState":{"x":[{"value":13290205184},{"value":121015},{"value":13289668608},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":13290205184},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806348008},"far":{"value":0}}},{"id":16208313,"name":"ThreadPoolBackgroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869442},{"value":0},{"value":602768595222528},{"value":0},{"value":602768595222528},{"value":32},{"value":33000},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":140343},{"value":2435125559},{"value":2433026328},{"value":18446744073709551569},{"value":311},{"value":0},{"value":33000},{"value":32},{"value":602768595222528},{"value":0},{"value":602768595222528},{"value":14897786128},{"value":0},{"value":17179870466},{"value":17179869442},{"value":1282}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806177232},"cpsr":{"value":4096},"fp":{"value":14897785472},"sp":{"value":14897785392},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806101556},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":222},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":222},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":222},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":222},{"imageOffset":66741424,"imageIndex":56},{"imageOffset":66197236,"imageIndex":56},{"imageOffset":66429892,"imageIndex":56},{"imageOffset":66432404,"imageIndex":56},{"imageOffset":66431884,"imageIndex":56},{"imageOffset":66431792,"imageIndex":56},{"imageOffset":66589352,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":16208646,"name":"Thread (pooled)","threadState":{"x":[{"value":260},{"value":0},{"value":212480},{"value":0},{"value":0},{"value":160},{"value":29},{"value":999999000},{"value":13316533640},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8638699528},{"value":0},{"value":105553155809792},{"value":105553155809856},{"value":13316534496},{"value":999999000},{"value":29},{"value":212480},{"value":212481},{"value":212736},{"value":18446744072709551616},{"value":4335992784}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":13316533760},"sp":{"value":13316533616},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}},"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":2091160,"imageIndex":45},{"imageOffset":2090828,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":108,"imageIndex":45},{"imageOffset":2068292,"imageIndex":45},{"imageOffset":2051468,"imageIndex":45},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":16208647,"name":"Thread (pooled)","threadState":{"x":[{"value":260},{"value":0},{"value":215808},{"value":0},{"value":0},{"value":160},{"value":29},{"value":999996000},{"value":13361343880},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8638699528},{"value":0},{"value":105553155508096},{"value":105553155508160},{"value":13361344736},{"value":999996000},{"value":29},{"value":215808},{"value":215809},{"value":216064},{"value":18446744072709551616},{"value":105553155935016}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":13361344000},"sp":{"value":13361343856},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}},"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":2091160,"imageIndex":45},{"imageOffset":2090828,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":108,"imageIndex":45},{"imageOffset":2068292,"imageIndex":45},{"imageOffset":2051468,"imageIndex":45},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":16208648,"name":"Thread (pooled)","threadState":{"x":[{"value":260},{"value":0},{"value":176896},{"value":0},{"value":0},{"value":160},{"value":29},{"value":999952000},{"value":13361917320},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8638699528},{"value":0},{"value":105553155809024},{"value":105553155809088},{"value":13361918176},{"value":999952000},{"value":29},{"value":176896},{"value":176897},{"value":177152},{"value":18446744072709551616},{"value":105553155935040}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":13361917440},"sp":{"value":13361917296},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}},"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":2091160,"imageIndex":45},{"imageOffset":2090828,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":108,"imageIndex":45},{"imageOffset":2068292,"imageIndex":45},{"imageOffset":2051468,"imageIndex":45},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]},{"id":16208649,"name":"Thread (pooled)","threadState":{"x":[{"value":260},{"value":0},{"value":257792},{"value":0},{"value":0},{"value":160},{"value":29},{"value":999999000},{"value":13362490760},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8638699528},{"value":0},{"value":105553155809408},{"value":105553155809472},{"value":13362491616},{"value":999999000},{"value":29},{"value":257792},{"value":257793},{"value":258048},{"value":18446744072709551616},{"value":4335992784}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6806370452},"cpsr":{"value":1610616832},"fp":{"value":13362490880},"sp":{"value":13362490736},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6806115788},"far":{"value":0}},"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":222},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":223},{"imageOffset":2091160,"imageIndex":45},{"imageOffset":2090828,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":108,"imageIndex":45},{"imageOffset":2068292,"imageIndex":45},{"imageOffset":2051468,"imageIndex":45},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":223},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":223}]}],
"usedImages" : [
{
"source" : "P",
"arch" : "arm64",
"base" : 4300111872,
"CFBundleShortVersionString" : "1.8.0",
"CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX",
"size" : 16384,
"uuid" : "17982d98-65bc-3327-8526-577ec996453c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"name" : "ChimeraX",
"CFBundleVersion" : "1.8.0.0"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4314431488,
"CFBundleShortVersionString" : "3.11.4, (c) 2001-2023 Python Software Foundation.",
"CFBundleIdentifier" : "org.python.python",
"size" : 3948544,
"uuid" : "88bffd37-99d8-36ab-9b95-9f54b30bd667",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python",
"name" : "Python",
"CFBundleVersion" : "3.11.4"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4302929920,
"size" : 49152,
"uuid" : "51d31d0d-1dcc-31ad-b6c1-73d57e544a3a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/math.cpython-311-darwin.so",
"name" : "math.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4302667776,
"size" : 81920,
"uuid" : "3b2e1e73-f5e1-3fa3-80b3-e46009060893",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_datetime.cpython-311-darwin.so",
"name" : "_datetime.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4302848000,
"size" : 16384,
"uuid" : "39aa96c6-b691-3e20-9540-292b9dd1c861",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_typing.cpython-311-darwin.so",
"name" : "_typing.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4305387520,
"size" : 32768,
"uuid" : "65172ede-2b95-337d-970f-ed6c4a217cb1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/zlib.cpython-311-darwin.so",
"name" : "zlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4306550784,
"size" : 16384,
"uuid" : "dc7a591b-ef8a-3b77-9396-ecee27303fdb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bz2.cpython-311-darwin.so",
"name" : "_bz2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4307222528,
"size" : 196608,
"uuid" : "a4b86716-73ef-3046-b7ee-1d069dfd7cd0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_lzma.cpython-311-darwin.so",
"name" : "_lzma.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4306632704,
"size" : 16384,
"uuid" : "a97f3cfd-a5a7-3ce2-9eb6-5ebc0943bd1d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bisect.cpython-311-darwin.so",
"name" : "_bisect.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4306714624,
"size" : 16384,
"uuid" : "1eab426b-5d06-3a22-b7b5-6dbc112704d6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_random.cpython-311-darwin.so",
"name" : "_random.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4306796544,
"size" : 16384,
"uuid" : "487467f0-5417-397f-8fb9-43ce116abec8",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_sha512.cpython-311-darwin.so",
"name" : "_sha512.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4306878464,
"size" : 32768,
"uuid" : "c4b2ad90-cc7d-3780-bee9-9f1dbc2aa560",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/binascii.cpython-311-darwin.so",
"name" : "binascii.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4306976768,
"size" : 32768,
"uuid" : "167d8231-8346-37b6-9d67-149a1fe3df21",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_struct.cpython-311-darwin.so",
"name" : "_struct.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4307091456,
"size" : 16384,
"uuid" : "9e9f3dfb-1383-3420-bfcf-d996842d8e9e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/fcntl.cpython-311-darwin.so",
"name" : "fcntl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4307517440,
"size" : 16384,
"uuid" : "d685528c-5d21-3c1a-b720-81f8ba0b399a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_posixsubprocess.cpython-311-darwin.so",
"name" : "_posixsubprocess.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4307599360,
"size" : 32768,
"uuid" : "d25f2f2d-a87d-3870-ad6a-3d977d50c9ca",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/select.cpython-311-darwin.so",
"name" : "select.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4308746240,
"size" : 16384,
"uuid" : "6fbbcdd9-e49c-3a59-9ff0-32d41317e11c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/_arrays.cpython-311-darwin.so",
"name" : "_arrays.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4310794240,
"size" : 458752,
"uuid" : "3ef7d30f-bd93-3167-a91a-3f0a3f161d1b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/lib\/libarrays.dylib",
"name" : "libarrays.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4330553344,
"size" : 2670592,
"uuid" : "744b099b-9156-3efd-95ee-949f9bec068e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_umath.cpython-311-darwin.so",
"name" : "_multiarray_umath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4353687552,
"size" : 21299200,
"uuid" : "9854a721-2573-3169-81ec-19ea40ce8077",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
"name" : "libopenblas64_.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4321771520,
"size" : 3522560,
"uuid" : "dd0e012a-b6de-31b1-a28e-260c7b51e595",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgfortran.5.dylib",
"name" : "libgfortran.5.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4311433216,
"size" : 311296,
"uuid" : "6d39d54b-d80e-3218-a095-b81ad0b3be90",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libquadmath.0.dylib",
"name" : "libquadmath.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4305158144,
"size" : 65536,
"uuid" : "d9875303-8f38-33d9-a0d3-ab0adff3b915",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgcc_s.1.1.dylib",
"name" : "libgcc_s.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4310269952,
"size" : 98304,
"uuid" : "ad5b1457-a682-3233-ac84-0f75b349239d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_pickle.cpython-311-darwin.so",
"name" : "_pickle.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4305305600,
"size" : 16384,
"uuid" : "c1a0a0c0-1986-3338-a63d-eb396e783c91",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_contextvars.cpython-311-darwin.so",
"name" : "_contextvars.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4310450176,
"size" : 65536,
"uuid" : "340d4f4e-8cd4-3e24-9215-eb9235031bd3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_tests.cpython-311-darwin.so",
"name" : "_multiarray_tests.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4310597632,
"size" : 81920,
"uuid" : "6c214dd2-6044-3285-949b-8d8ba72ca17b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ctypes.cpython-311-darwin.so",
"name" : "_ctypes.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4309876736,
"size" : 98304,
"uuid" : "09f94631-f551-3559-ba88-aff49917d8fe",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/linalg\/_umath_linalg.cpython-311-darwin.so",
"name" : "_umath_linalg.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4310056960,
"size" : 65536,
"uuid" : "7b5335ce-92a1-3ae2-bde0-0e5d5641b2c9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/fft\/_pocketfft_internal.cpython-311-darwin.so",
"name" : "_pocketfft_internal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4328079360,
"size" : 622592,
"uuid" : "05ddaab9-9d7f-3317-a3c4-5e9936fe3ceb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/mtrand.cpython-311-darwin.so",
"name" : "mtrand.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4326555648,
"size" : 147456,
"uuid" : "377e255e-f9a4-3173-8265-a899000c5d0f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/bit_generator.cpython-311-darwin.so",
"name" : "bit_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4313907200,
"size" : 196608,
"uuid" : "8590d52a-d755-3ffd-8f68-f9cb638359fc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_common.cpython-311-darwin.so",
"name" : "_common.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4326785024,
"size" : 32768,
"uuid" : "322b4be7-35a8-331a-a549-7a0297d9dd70",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_hashlib.cpython-311-darwin.so",
"name" : "_hashlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4339105792,
"size" : 1687552,
"uuid" : "59149ee6-b873-3c5d-8fed-d11966210295",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libcrypto.1.1.dylib",
"name" : "libcrypto.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4326899712,
"size" : 32768,
"uuid" : "3206e248-2c9b-345c-98ac-8f9dfc6d639b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_blake2.cpython-311-darwin.so",
"name" : "_blake2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4328816640,
"size" : 311296,
"uuid" : "0033ea49-a161-3564-b09e-6a6c3b902698",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_bounded_integers.cpython-311-darwin.so",
"name" : "_bounded_integers.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4314185728,
"size" : 65536,
"uuid" : "7dab4595-a351-3061-861b-c426baee85b3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_mt19937.cpython-311-darwin.so",
"name" : "_mt19937.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4327292928,
"size" : 65536,
"uuid" : "d3035eea-ed0e-398a-afbe-f9a8016701db",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_philox.cpython-311-darwin.so",
"name" : "_philox.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4326998016,
"size" : 81920,
"uuid" : "35fb9307-f991-3159-86db-21f6c67b9198",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_pcg64.cpython-311-darwin.so",
"name" : "_pcg64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4327161856,
"size" : 49152,
"uuid" : "17a4344b-3221-36c4-9019-53cc1223e124",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_sfc64.cpython-311-darwin.so",
"name" : "_sfc64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4329209856,
"size" : 737280,
"uuid" : "49451e8a-e3c8-3429-83d8-249e81e378cd",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_generator.cpython-311-darwin.so",
"name" : "_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4310188032,
"size" : 16384,
"uuid" : "5973ec29-8c62-3285-97ee-5797aef28b1c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_opcode.cpython-311-darwin.so",
"name" : "_opcode.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4330061824,
"size" : 114688,
"uuid" : "229d2556-e1e0-3432-9458-1636804585a5",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/geometry\/_geometry.cpython-311-darwin.so",
"name" : "_geometry.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4314333184,
"size" : 32768,
"uuid" : "0722922a-a378-3dee-b11b-96d1ae381b09",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_json.cpython-311-darwin.so",
"name" : "_json.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4596957184,
"size" : 1769472,
"uuid" : "80f789cb-18ee-3995-a59b-03dc33158c84",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtCore.abi3.so",
"name" : "QtCore.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4420796416,
"size" : 4849664,
"uuid" : "113c92ac-6022-34c0-8532-0a96c67af294",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore",
"name" : "QtCore"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 4327440384,
"CFBundleShortVersionString" : "3.0",
"CFBundleIdentifier" : "com.apple.security.csparser",
"size" : 131072,
"uuid" : "db365164-e7d4-3315-a4bf-a306666f29d7",
"path" : "\/System\/Library\/Frameworks\/Security.framework\/Versions\/A\/PlugIns\/csparser.bundle\/Contents\/MacOS\/csparser",
"name" : "csparser",
"CFBundleVersion" : "61439.41.1.0.1"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4330291200,
"size" : 81920,
"uuid" : "b6b22843-cb0a-3d00-952e-37e8808d2ee8",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/sip.cpython-311-darwin.so",
"name" : "sip.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4601774080,
"size" : 3112960,
"uuid" : "ee8cff87-6a5d-38d1-8403-031c9916b0fb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWidgets.abi3.so",
"name" : "QtWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4873781248,
"size" : 4554752,
"uuid" : "3f78f0e3-d0d9-3375-a27c-2906014b5fe2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets",
"name" : "QtWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5317296128,
"size" : 6537216,
"uuid" : "e1e85506-35dd-32b9-b614-7f3179359271",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui",
"name" : "QtGui"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4342480896,
"size" : 507904,
"uuid" : "7a365b1d-ddab-3dec-80b0-d21186597d32",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtDBus.framework\/Versions\/A\/QtDBus",
"name" : "QtDBus"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4608131072,
"size" : 1572864,
"uuid" : "c8d7e625-2a13-3c34-9dff-b6656a6f86e7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtGui.abi3.so",
"name" : "QtGui.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4335583232,
"size" : 65536,
"uuid" : "e159845d-c85f-317e-a1d0-225a578b8d24",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineWidgets.abi3.so",
"name" : "QtWebEngineWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4335239168,
"size" : 98304,
"uuid" : "16db4b50-36fd-3e6b-a27f-a1c2f3f65a0e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineWidgets.framework\/Versions\/A\/QtWebEngineWidgets",
"name" : "QtWebEngineWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4378083328,
"size" : 278528,
"uuid" : "69a381be-74c3-3943-839e-c2710e3b1221",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPrintSupport.framework\/Versions\/A\/QtPrintSupport",
"name" : "QtPrintSupport"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5695979520,
"size" : 165756928,
"uuid" : "72eb72da-af14-3e6d-a878-889044e69fe6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
"name" : "QtWebEngineCore"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5325111296,
"size" : 3899392,
"uuid" : "cd78ea4b-fdea-35f8-9425-2acf80e29b96",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuick.framework\/Versions\/A\/QtQuick",
"name" : "QtQuick"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5305384960,
"size" : 409600,
"uuid" : "69fc8b0b-b6a0-3e08-8bac-584a6a3a93b0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGL.framework\/Versions\/A\/QtOpenGL",
"name" : "QtOpenGL"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5304107008,
"size" : 540672,
"uuid" : "054ea112-953a-32d0-a58f-bc186ae37747",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQmlModels.framework\/Versions\/A\/QtQmlModels",
"name" : "QtQmlModels"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4378558464,
"size" : 163840,
"uuid" : "bcc67564-cc1c-3017-b5f1-0b6e1b0e993c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebChannel.framework\/Versions\/A\/QtWebChannel",
"name" : "QtWebChannel"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5330534400,
"size" : 3833856,
"uuid" : "432c2bd3-2e4c-3089-b092-df3547feaafd",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQml.framework\/Versions\/A\/QtQml",
"name" : "QtQml"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5308973056,
"size" : 1081344,
"uuid" : "fed592df-e45a-3887-b02f-65e20ff51c4b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtNetwork.framework\/Versions\/A\/QtNetwork",
"name" : "QtNetwork"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5307252736,
"size" : 442368,
"uuid" : "a02974a0-e1a7-316f-8e3b-ae2e03dc4433",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPositioning.framework\/Versions\/A\/QtPositioning",
"name" : "QtPositioning"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4879794176,
"size" : 81920,
"uuid" : "55f5d063-f2ad-361c-ad8d-afc759bfeec1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuickWidgets.framework\/Versions\/A\/QtQuickWidgets",
"name" : "QtQuickWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5306007552,
"size" : 491520,
"uuid" : "07f8ba95-385f-3636-aaf1-1cee596fe424",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtNetwork.abi3.so",
"name" : "QtNetwork.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4426530816,
"size" : 163840,
"uuid" : "88b20f5e-7cfd-31bb-ac2c-68580822b362",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtPrintSupport.abi3.so",
"name" : "QtPrintSupport.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4335468544,
"size" : 32768,
"uuid" : "a169d745-309d-33d5-a2e6-e7c4e96708be",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebChannel.abi3.so",
"name" : "QtWebChannel.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5311676416,
"size" : 229376,
"uuid" : "5b3816f5-31a1-3950-9b9a-77d1f921188c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineCore.abi3.so",
"name" : "QtWebEngineCore.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5314134016,
"size" : 638976,
"uuid" : "68fd5eb3-4cdf-3190-8b80-e5378d6b4c9d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib",
"name" : "libqcocoa.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 5316280320,
"CFBundleShortVersionString" : "1.0",
"CFBundleIdentifier" : "com.apple.AppleMetalOpenGLRenderer",
"size" : 425984,
"uuid" : "cf2a5428-9317-35dd-847f-f1d1970961a0",
"path" : "\/System\/Library\/Extensions\/AppleMetalOpenGLRenderer.bundle\/Contents\/MacOS\/AppleMetalOpenGLRenderer",
"name" : "AppleMetalOpenGLRenderer",
"CFBundleVersion" : "1"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 5393399808,
"CFBundleShortVersionString" : "322.10",
"CFBundleIdentifier" : "com.apple.AGXMetalG13X",
"size" : 6946816,
"uuid" : "e863b7d4-d308-3f26-a59f-9dc04134c15e",
"path" : "\/System\/Library\/Extensions\/AGXMetalG13X.bundle\/Contents\/MacOS\/AGXMetalG13X",
"name" : "AGXMetalG13X",
"CFBundleVersion" : "322.10"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5317033984,
"size" : 147456,
"uuid" : "240cb694-5652-380e-a13f-72e024b43ffc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/styles\/libqmacstyle.dylib",
"name" : "libqmacstyle.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5391007744,
"size" : 163840,
"uuid" : "78ab6dee-103a-31de-bb4e-ea5e9b694cb0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/pyexpat.cpython-311-darwin.so",
"name" : "pyexpat.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5369593856,
"size" : 65536,
"uuid" : "ff7c6b72-2303-3d40-a4fa-f3d840425be2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_socket.cpython-311-darwin.so",
"name" : "_socket.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5390696448,
"size" : 49152,
"uuid" : "0895ead1-fff8-3401-9c5c-5c4254ce969b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/array.cpython-311-darwin.so",
"name" : "array.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5390598144,
"size" : 16384,
"uuid" : "157e3710-caca-35b5-9fda-d1c4efc75429",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_heapq.cpython-311-darwin.so",
"name" : "_heapq.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5390827520,
"size" : 16384,
"uuid" : "b3287e1f-ce2c-3c6f-bc12-deb15c14593c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_queue.cpython-311-darwin.so",
"name" : "_queue.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5402689536,
"size" : 98304,
"uuid" : "5c15959b-b36d-32f8-80b0-b0558dbb9fcc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ssl.cpython-311-darwin.so",
"name" : "_ssl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5404098560,
"size" : 344064,
"uuid" : "edcc52bf-058b-3550-8a40-7e432a5ee6bb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libssl.1.1.dylib",
"name" : "libssl.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5390909440,
"size" : 16384,
"uuid" : "cd5f3f7c-54a3-322d-a180-6c7b94deed82",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_scproxy.cpython-311-darwin.so",
"name" : "_scproxy.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5402230784,
"size" : 16384,
"uuid" : "ecf905dd-b03f-3e39-a475-0f3103f3e6d3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/grp.cpython-311-darwin.so",
"name" : "grp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5390434304,
"size" : 32768,
"uuid" : "d197680c-26b9-3292-85bc-f61af0ff34bb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_csv.cpython-311-darwin.so",
"name" : "_csv.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5402476544,
"size" : 16384,
"uuid" : "0d834156-6229-3383-833b-5e4dbda14b77",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5414354944,
"size" : 1114112,
"uuid" : "fd7b00a2-d609-31e8-8ce3-7c101acdcbbe",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libatomstruct.dylib",
"name" : "libatomstruct.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5402312704,
"size" : 32768,
"uuid" : "3db66b4e-c7b2-34b6-ae7b-bb92d644ccb7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libelement.dylib",
"name" : "libelement.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5402558464,
"size" : 16384,
"uuid" : "5f3c3a7c-ae17-3758-b5c7-5e9a0d0a4a39",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libpyinstance.dylib",
"name" : "libpyinstance.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5408849920,
"size" : 180224,
"uuid" : "106fe191-9c12-3ced-bb2f-fa38a412daf1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/libmolc.dylib",
"name" : "libmolc.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5412012032,
"size" : 425984,
"uuid" : "de33f8cb-88d5-3371-851a-e5de0f9689c2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cymol.cpython-311-darwin.so",
"name" : "cymol.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5409292288,
"size" : 98304,
"uuid" : "12f930bf-d331-3ae7-88cb-fbf14c2f66f7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/tinyarray.cpython-311-darwin.so",
"name" : "tinyarray.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5410947072,
"size" : 49152,
"uuid" : "fe5b0329-3d3a-3bfa-a7e9-e6c0e583311e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cytmpl.cpython-311-darwin.so",
"name" : "cytmpl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5411094528,
"size" : 409600,
"uuid" : "358a0dd4-0955-30b7-a45c-561026d32a66",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/map\/_map.cpython-311-darwin.so",
"name" : "_map.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5403967488,
"size" : 16384,
"uuid" : "89141903-d9ce-369c-b76f-2f794585b0e3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md.cpython-311-darwin.so",
"name" : "md.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5410652160,
"size" : 147456,
"uuid" : "3a5bf6ce-7cc0-327a-8ff1-52f7adac24a4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md__mypyc.cpython-311-darwin.so",
"name" : "md__mypyc.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5420613632,
"size" : 1114112,
"uuid" : "5200c6a0-ccdb-3607-9947-1defdd6fb647",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/unicodedata.cpython-311-darwin.so",
"name" : "unicodedata.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5413732352,
"size" : 32768,
"uuid" : "7503f11a-978c-3a80-b5da-ab207a441c5e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_multibytecodec.cpython-311-darwin.so",
"name" : "_multibytecodec.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5411864576,
"size" : 16384,
"uuid" : "8eb0c267-c007-3e24-9604-1f0a78868795",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_uuid.cpython-311-darwin.so",
"name" : "_uuid.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5413847040,
"size" : 262144,
"uuid" : "f2c706bd-a2c4-39ce-b4c0-048c01ea0eca",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_decimal.cpython-311-darwin.so",
"name" : "_decimal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5422972928,
"size" : 376832,
"uuid" : "be0ff669-9570-3fbc-b643-583c25c53bcc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imaging.cpython-311-darwin.so",
"name" : "_imaging.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5421809664,
"size" : 688128,
"uuid" : "15feb07e-8bff-3562-a02a-8cf33732e6df",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libtiff.6.dylib",
"name" : "libtiff.6.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5424939008,
"size" : 524288,
"uuid" : "f077add4-3b80-3e03-9f5d-d46370a8594f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libjpeg.62.4.0.dylib",
"name" : "libjpeg.62.4.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5425577984,
"size" : 606208,
"uuid" : "78bac0b1-a0df-3e6e-b906-cbc961cdb354",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libopenjp2.2.5.2.dylib",
"name" : "libopenjp2.2.5.2.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5420318720,
"size" : 114688,
"uuid" : "aa2246c4-3418-31d6-b63c-b12523be454f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libz.1.3.1.dylib",
"name" : "libz.1.3.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5422628864,
"size" : 163840,
"uuid" : "72b5dc2b-0af5-32a5-8a55-1a0cc0dd14e0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libxcb.1.dylib",
"name" : "libxcb.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5424201728,
"size" : 262144,
"uuid" : "8a87fb4d-f743-3c9e-bee7-721b8d2f34ac",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/liblzma.5.dylib",
"name" : "liblzma.5.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5414240256,
"size" : 16384,
"uuid" : "55c39336-6291-32f1-a957-7d880570affd",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libXau.6.0.0.dylib",
"name" : "libXau.6.0.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5420498944,
"size" : 16384,
"uuid" : "10cb0192-6e54-3232-ba83-11bac176e9df",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/termios.cpython-311-darwin.so",
"name" : "termios.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5423529984,
"size" : 16384,
"uuid" : "fdd4ed4b-946d-3635-b962-de82abc3462a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_c_internal_utils.cpython-311-darwin.so",
"name" : "_c_internal_utils.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5424545792,
"size" : 114688,
"uuid" : "f78c05df-89c8-38d5-90fa-ae102328b198",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_path.cpython-311-darwin.so",
"name" : "_path.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5436489728,
"size" : 589824,
"uuid" : "d33db4fb-c546-3a3f-af92-06b3acf9a005",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/ft2font.cpython-311-darwin.so",
"name" : "ft2font.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5434769408,
"size" : 114688,
"uuid" : "7d718d62-a2e1-318a-8f9d-9b2ac2293986",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/kiwisolver\/_cext.cpython-311-darwin.so",
"name" : "_cext.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5424742400,
"size" : 114688,
"uuid" : "5d45ac62-e87c-31ae-9f9a-8bdc101f61d2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_image.cpython-311-darwin.so",
"name" : "_image.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5423611904,
"size" : 16384,
"uuid" : "6ea2ba5a-5354-35d2-a092-0249bbb6d929",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5411700736,
"size" : 32768,
"uuid" : "b0eab6c4-6692-3eac-bea4-60c69e87993c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/lib\/libpdbconnect.dylib",
"name" : "libpdbconnect.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5423693824,
"size" : 147456,
"uuid" : "93458d84-c67a-3585-8201-ff7b58cc50a6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/surface\/_surface.cpython-311-darwin.so",
"name" : "_surface.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5436096512,
"size" : 49152,
"uuid" : "4c5d42bf-4e9d-3c59-bf2e-303deda3aeb2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/errorchecker.cpython-311-darwin.so",
"name" : "errorchecker.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5438357504,
"size" : 196608,
"uuid" : "c4b0c9bc-a01b-3cf7-b16b-77f9b13b6cd9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/arraydatatype.cpython-311-darwin.so",
"name" : "arraydatatype.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5453348864,
"size" : 229376,
"uuid" : "33919aef-b02e-386a-8f81-a661fe002ddc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/wrapper.cpython-311-darwin.so",
"name" : "wrapper.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5423955968,
"size" : 65536,
"uuid" : "d9a192eb-4bf9-362f-99d4-f6bc1e368b01",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/formathandler.cpython-311-darwin.so",
"name" : "formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5438685184,
"size" : 49152,
"uuid" : "38eab131-624a-32cf-8d4e-374bca53e017",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/latebind.cpython-311-darwin.so",
"name" : "latebind.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5436227584,
"size" : 131072,
"uuid" : "3ef700f1-b0ef-333f-8291-6877887bedaa",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/vbo.cpython-311-darwin.so",
"name" : "vbo.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5428379648,
"size" : 32768,
"uuid" : "e00ce596-2864-3abf-bdff-8a38c7f22299",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqgif.dylib",
"name" : "libqgif.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5453234176,
"size" : 32768,
"uuid" : "dbf1d60b-d923-3193-a32e-96d3a81b9556",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwbmp.dylib",
"name" : "libqwbmp.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5496406016,
"size" : 442368,
"uuid" : "d64ad34b-954b-3e65-b4b7-cb030bea2c1e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwebp.dylib",
"name" : "libqwebp.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5455626240,
"size" : 32768,
"uuid" : "0552b37d-fa94-3519-9b5c-94cb314a2cd1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqico.dylib",
"name" : "libqico.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5495406592,
"size" : 32768,
"uuid" : "df91425d-7fd1-3fc7-90c3-147cb82c19db",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacheif.dylib",
"name" : "libqmacheif.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5495504896,
"size" : 425984,
"uuid" : "faac1c6c-772a-36fc-99b1-1796fe013571",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqjpeg.dylib",
"name" : "libqjpeg.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5497946112,
"size" : 393216,
"uuid" : "d172365c-3e61-356e-841b-8eebabcb45da",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtiff.dylib",
"name" : "libqtiff.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5496012800,
"size" : 32768,
"uuid" : "77608453-0c22-327c-909a-3e61997f035f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqsvg.dylib",
"name" : "libqsvg.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5498421248,
"size" : 229376,
"uuid" : "6ae5d9b1-7feb-31a5-b3c1-09bfbb908790",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtSvg.framework\/Versions\/A\/QtSvg",
"name" : "QtSvg"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5496111104,
"size" : 32768,
"uuid" : "2170e2a2-3e24-3e7d-889f-70bfe1445514",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqpdf.dylib",
"name" : "libqpdf.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5654872064,
"size" : 8011776,
"uuid" : "2297c440-bc47-3988-b508-c4f43a12de4c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPdf.framework\/Versions\/A\/QtPdf",
"name" : "QtPdf"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5496209408,
"size" : 32768,
"uuid" : "aaf72e4f-a4b5-3143-abe4-cd0b9c88e736",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqicns.dylib",
"name" : "libqicns.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5496307712,
"size" : 32768,
"uuid" : "97f0c601-577c-3e3d-9728-1b67a04a846f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtga.dylib",
"name" : "libqtga.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5496930304,
"size" : 32768,
"uuid" : "73065b31-2315-3d94-8ece-5a8b66a743b4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacjp2.dylib",
"name" : "libqmacjp2.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 5424119808,
"size" : 49152,
"uuid" : "f1242604-dcb7-30a9-a19a-182991e6e645",
"path" : "\/usr\/lib\/libobjc-trampolines.dylib",
"name" : "libobjc-trampolines.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5489213440,
"size" : 16384,
"uuid" : "117d4c42-f31b-3051-a57f-edb1c3f20c84",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_mac_util.cpython-311-darwin.so",
"name" : "_mac_util.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5694734336,
"size" : 81920,
"uuid" : "703104dc-b212-3b8d-9c78-4f57b3c9cb18",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/numpy_formathandler.cpython-311-darwin.so",
"name" : "numpy_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5695700992,
"size" : 49152,
"uuid" : "12c53516-421d-3f7a-a81e-95bcfdb8a3ff",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/nones_formathandler.cpython-311-darwin.so",
"name" : "nones_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5693931520,
"size" : 81920,
"uuid" : "d7bd530c-3353-37a6-b81f-ee3179d65811",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lz4\/_version.cpython-311-darwin.so",
"name" : "_version.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6060507136,
"size" : 180224,
"uuid" : "87eed069-25fc-30f6-aa30-1e54859d92e2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lz4\/frame\/_frame.cpython-311-darwin.so",
"name" : "_frame.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6038519808,
"size" : 131072,
"uuid" : "f5aa887d-ba83-3ffc-a567-69cef02c403b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_serialize.cpython-311-darwin.so",
"name" : "_serialize.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6060785664,
"size" : 131072,
"uuid" : "650aead6-ce16-39bb-9ba1-4bf9986b96d6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/msgpack\/_cmsgpack.cpython-311-darwin.so",
"name" : "_cmsgpack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6063849472,
"size" : 753664,
"uuid" : "b6b681ee-3078-3901-a867-0f46c38489a1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGL.abi3.so",
"name" : "QtOpenGL.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6038323200,
"size" : 49152,
"uuid" : "cf3da9e7-3f71-33cf-8133-69a177c7de19",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGLWidgets.abi3.so",
"name" : "QtOpenGLWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6061031424,
"size" : 49152,
"uuid" : "bca2dfd9-9c81-3013-a4e9-0505eec8b180",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGLWidgets.framework\/Versions\/A\/QtOpenGLWidgets",
"name" : "QtOpenGLWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6089916416,
"size" : 4096000,
"uuid" : "3c92d9be-9b63-3d45-838a-e4fd342ddf46",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/etree.cpython-311-darwin.so",
"name" : "etree.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6038011904,
"size" : 147456,
"uuid" : "0ee9ca02-13c3-3c35-99ec-fdcf207a8b79",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/_elementpath.cpython-311-darwin.so",
"name" : "_elementpath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5670010880,
"size" : 32768,
"uuid" : "f6112c45-e8b3-3787-a9ab-c7209e77530f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imagingmath.cpython-311-darwin.so",
"name" : "_imagingmath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5365956608,
"size" : 49152,
"uuid" : "950b133a-694e-372f-9c73-9bc1d0324ec0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/iconengines\/libqsvgicon.dylib",
"name" : "libqsvgicon.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5361827840,
"size" : 32768,
"uuid" : "2c043e84-38d8-33d9-a9a4-ff18ae1f885f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/psutil\/_psutil_osx.abi3.so",
"name" : "_psutil_osx.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5364547584,
"size" : 16384,
"uuid" : "802f0c32-e7ad-3a81-ac8d-ae72c0022ae6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/psutil\/_psutil_posix.abi3.so",
"name" : "_psutil_posix.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5361434624,
"size" : 16384,
"uuid" : "c802abe8-4352-3827-8717-7d4c0f0892ff",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/graphics\/_graphics.cpython-311-darwin.so",
"name" : "_graphics.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6385827840,
"size" : 458752,
"uuid" : "6b6db01c-1280-3773-b08f-d693798baba7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/mmcif.cpython-311-darwin.so",
"name" : "mmcif.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13137608704,
"size" : 409600,
"uuid" : "f03f0cb6-82d1-33ee-a10b-cc8d92c14417",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/_mmcif.cpython-311-darwin.so",
"name" : "_mmcif.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6171164672,
"size" : 81920,
"uuid" : "2f167b0b-b0ab-3b3f-a99e-27fc153b427d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/_ribbons.cpython-311-darwin.so",
"name" : "_ribbons.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6240256000,
"size" : 147456,
"uuid" : "96691a20-aa26-3905-98c4-0939edf5bdd4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb\/_pdbio.cpython-311-darwin.so",
"name" : "_pdbio.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5366824960,
"size" : 16384,
"uuid" : "370842e5-ccc2-376e-8dec-03f37f99d12d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/_sw.cpython-311-darwin.so",
"name" : "_sw.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6024151040,
"size" : 16384,
"uuid" : "44f5649d-7eb7-3266-bfeb-a8c867c97d85",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/libalign_algs.dylib",
"name" : "libalign_algs.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6224674816,
"size" : 16384,
"uuid" : "c62ad20e-2943-300a-8583-f8d01bcdffc7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/dssp\/_dssp.cpython-311-darwin.so",
"name" : "_dssp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6226968576,
"size" : 32768,
"uuid" : "0b918cd1-028a-3096-be4e-175a2cf8f343",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/_nw.cpython-311-darwin.so",
"name" : "_nw.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6051364864,
"size" : 65536,
"uuid" : "d8ceea6b-c66d-375a-8caf-c66e8c1275e6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/_lib\/_ccallback_c.cpython-311-darwin.so",
"name" : "_ccallback_c.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13233274880,
"size" : 311296,
"uuid" : "5378b8ec-f450-378d-92b9-3bcc87261ec1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_fblas.cpython-311-darwin.so",
"name" : "_fblas.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 17795989504,
"size" : 18235392,
"uuid" : "f1e25325-d9be-3248-a55c-48b550d2fc20",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/.dylibs\/libopenblas.0.dylib",
"name" : "libopenblas.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14365032448,
"size" : 1376256,
"uuid" : "6ac1f5f8-7aba-3124-b2f9-9b5d405fca38",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/.dylibs\/libgfortran.5.dylib",
"name" : "libgfortran.5.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13231472640,
"size" : 262144,
"uuid" : "4093e2c1-33fc-3e2d-af97-1d64ab57d588",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/.dylibs\/libquadmath.0.dylib",
"name" : "libquadmath.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6363611136,
"size" : 65536,
"uuid" : "9cdc7ef1-1289-35a2-9598-be8f4053af15",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/.dylibs\/libgcc_s.1.1.dylib",
"name" : "libgcc_s.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14592901120,
"size" : 983040,
"uuid" : "91bbbbc9-a86d-3a94-a54d-35d3aa08b0a2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_flapack.cpython-311-darwin.so",
"name" : "_flapack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13358186496,
"size" : 393216,
"uuid" : "aadd8daf-1938-3f6f-a9dd-992ee87e5089",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_cythonized_array_utils.cpython-311-darwin.so",
"name" : "_cythonized_array_utils.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14368899072,
"size" : 458752,
"uuid" : "db3f59a6-fa54-38cb-a7f2-8cc4fe78515c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/cython_lapack.cpython-311-darwin.so",
"name" : "cython_lapack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13228310528,
"size" : 163840,
"uuid" : "b52ae3e3-1916-3d76-b9f1-1afc9e182522",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_solve_toeplitz.cpython-311-darwin.so",
"name" : "_solve_toeplitz.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13233831936,
"size" : 147456,
"uuid" : "a1430d53-cb93-30aa-9989-635cf28c61f5",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_decomp_lu_cython.cpython-311-darwin.so",
"name" : "_decomp_lu_cython.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13239402496,
"size" : 147456,
"uuid" : "a2c0400a-cb75-3c5c-9d61-6c25be03d407",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_matfuncs_sqrtm_triu.cpython-311-darwin.so",
"name" : "_matfuncs_sqrtm_triu.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13377224704,
"size" : 327680,
"uuid" : "13289a5a-a989-30f3-acce-79d1dab885d1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_matfuncs_expm.cpython-311-darwin.so",
"name" : "_matfuncs_expm.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13240631296,
"size" : 180224,
"uuid" : "4e3cfc9c-2a8c-338a-9fc7-ffff6aff993e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/cython_blas.cpython-311-darwin.so",
"name" : "cython_blas.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13364772864,
"size" : 229376,
"uuid" : "c4fb2565-0f78-37e7-ba0a-0cafad8460c2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_decomp_update.cpython-311-darwin.so",
"name" : "_decomp_update.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14800666624,
"size" : 3260416,
"uuid" : "b81d91f7-b02d-312e-808e-c93c144f80fc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/_sparsetools.cpython-311-darwin.so",
"name" : "_sparsetools.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14369603584,
"size" : 475136,
"uuid" : "6397b6d3-86cc-3c9b-af4d-5167320ea993",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/_csparsetools.cpython-311-darwin.so",
"name" : "_csparsetools.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14025129984,
"size" : 262144,
"uuid" : "ffce1129-3f35-392b-a648-d1553b20ad43",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/linalg\/_dsolve\/_superlu.cpython-311-darwin.so",
"name" : "_superlu.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14029029376,
"size" : 360448,
"uuid" : "c105b51b-31c2-3b08-ac95-82b63f67719b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/linalg\/_eigen\/arpack\/_arpack.cpython-311-darwin.so",
"name" : "_arpack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13174423552,
"size" : 81920,
"uuid" : "fd39e810-479d-38c6-9562-eea71124ea32",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/linalg\/_propack\/_spropack.cpython-311-darwin.so",
"name" : "_spropack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13230358528,
"size" : 81920,
"uuid" : "0b0a2cb8-6e6a-3456-9c4d-67232c45aef5",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/linalg\/_propack\/_dpropack.cpython-311-darwin.so",
"name" : "_dpropack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13380059136,
"size" : 98304,
"uuid" : "15ec956f-34f7-3b2e-9aaf-d69735383e4e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/linalg\/_propack\/_cpropack.cpython-311-darwin.so",
"name" : "_cpropack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14367506432,
"size" : 81920,
"uuid" : "0eb9ddcc-b3ae-3f68-8cc5-4f02d1db1922",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/linalg\/_propack\/_zpropack.cpython-311-darwin.so",
"name" : "_zpropack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14033944576,
"size" : 294912,
"uuid" : "75bc4940-2d7b-34ee-874f-203f402cd9e4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_shortest_path.cpython-311-darwin.so",
"name" : "_shortest_path.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13283246080,
"size" : 131072,
"uuid" : "855d66b3-e4b5-30b0-9f95-66ea6728165e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_tools.cpython-311-darwin.so",
"name" : "_tools.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14367899648,
"size" : 393216,
"uuid" : "1290dc82-206f-3966-8be8-33afff597b3b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_traversal.cpython-311-darwin.so",
"name" : "_traversal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13383761920,
"size" : 147456,
"uuid" : "f0320be7-a3d5-38ea-923a-9be42392d2e1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_min_spanning_tree.cpython-311-darwin.so",
"name" : "_min_spanning_tree.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13391036416,
"size" : 196608,
"uuid" : "4a8061e3-43df-32e1-a08e-98c3aa52a656",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_flow.cpython-311-darwin.so",
"name" : "_flow.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13406732288,
"size" : 212992,
"uuid" : "efc0a490-985a-32ac-a3d5-d0386f6b8fd6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_matching.cpython-311-darwin.so",
"name" : "_matching.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14015479808,
"size" : 196608,
"uuid" : "d0e749d7-3e84-3b02-87a4-b01aab2a95a7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_reordering.cpython-311-darwin.so",
"name" : "_reordering.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6050496512,
"size" : 32768,
"uuid" : "d92e36df-c43c-3e79-bd30-e4ba1ec30fed",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_minpack2.cpython-311-darwin.so",
"name" : "_minpack2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6358335488,
"size" : 49152,
"uuid" : "d1dadc27-43dc-3295-83f6-418655ea0831",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_group_columns.cpython-311-darwin.so",
"name" : "_group_columns.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14027849728,
"size" : 212992,
"uuid" : "386d0828-2ee3-33f9-96f6-c70cd5409a01",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_trlib\/_trlib.cpython-311-darwin.so",
"name" : "_trlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13040123904,
"size" : 49152,
"uuid" : "95ae3b21-ed69-356a-af94-721dbabc13aa",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/_lib\/messagestream.cpython-311-darwin.so",
"name" : "messagestream.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13162201088,
"size" : 81920,
"uuid" : "d74c2d2e-2f6a-3c1d-8f3d-9865ac7d0dfd",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_lbfgsb.cpython-311-darwin.so",
"name" : "_lbfgsb.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13235699712,
"size" : 98304,
"uuid" : "e7fe5903-b1ea-3b84-b16b-58b34a02db21",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_moduleTNC.cpython-311-darwin.so",
"name" : "_moduleTNC.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13094912000,
"size" : 65536,
"uuid" : "7150b480-44ee-3696-b0d1-a0df0c832bc6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_cobyla.cpython-311-darwin.so",
"name" : "_cobyla.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13139361792,
"size" : 65536,
"uuid" : "3a2c5419-c0ec-3022-abd3-fd795ae0d0c0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_slsqp.cpython-311-darwin.so",
"name" : "_slsqp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6229590016,
"size" : 49152,
"uuid" : "2db39f4b-99bb-3f4e-9996-bddb979039df",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_minpack.cpython-311-darwin.so",
"name" : "_minpack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13376471040,
"size" : 131072,
"uuid" : "8a89bec1-d1a4-33e9-9187-c38106706c32",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_lsq\/givens_elimination.cpython-311-darwin.so",
"name" : "givens_elimination.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6050152448,
"size" : 16384,
"uuid" : "c4494bd1-af0e-33f6-b7f3-2b7b0612c0b0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_zeros.cpython-311-darwin.so",
"name" : "_zeros.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14804500480,
"size" : 2686976,
"uuid" : "5d9d5ff4-3151-325e-8ac2-355f9d5f3fca",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_highs\/_highs_wrapper.cpython-311-darwin.so",
"name" : "_highs_wrapper.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6356271104,
"size" : 32768,
"uuid" : "d7ca6dfb-323d-3817-939c-cc9492450f62",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_highs\/_highs_constants.cpython-311-darwin.so",
"name" : "_highs_constants.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14368391168,
"size" : 294912,
"uuid" : "7985d8c8-9c90-3ffb-994f-d2b0604f1672",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_interpolative.cpython-311-darwin.so",
"name" : "_interpolative.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14050115584,
"size" : 212992,
"uuid" : "6742962d-3fba-35a4-bc2c-4108128629f7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_bglu_dense.cpython-311-darwin.so",
"name" : "_bglu_dense.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6365855744,
"size" : 32768,
"uuid" : "86da86e5-84dd-3853-831c-5d556bbe2ad8",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_lsap.cpython-311-darwin.so",
"name" : "_lsap.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13397377024,
"size" : 98304,
"uuid" : "66771e8a-5743-3e31-8f15-07e5298ca24e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_pava_pybind.cpython-311-darwin.so",
"name" : "_pava_pybind.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14370193408,
"size" : 540672,
"uuid" : "3788c474-d98f-3b6f-8c6b-21eecaf4aaed",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/_ckdtree.cpython-311-darwin.so",
"name" : "_ckdtree.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14390640640,
"size" : 786432,
"uuid" : "b469142c-7ce4-39d3-a13e-177075708292",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/_qhull.cpython-311-darwin.so",
"name" : "_qhull.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13976862720,
"size" : 131072,
"uuid" : "cb85eedc-9bda-37d1-b859-80f0ccf3b2a9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/_voronoi.cpython-311-darwin.so",
"name" : "_voronoi.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13279019008,
"size" : 81920,
"uuid" : "e3264c87-020d-3205-a273-07feadce8b5f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/_distance_wrap.cpython-311-darwin.so",
"name" : "_distance_wrap.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14023180288,
"size" : 131072,
"uuid" : "e1b12eac-a12b-3dd3-a8ac-e3418ea893bc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/_hausdorff.cpython-311-darwin.so",
"name" : "_hausdorff.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14594621440,
"size" : 884736,
"uuid" : "00874c88-4946-3674-84a1-f19ce5d157d3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/special\/_ufuncs.cpython-311-darwin.so",
"name" : "_ufuncs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14397177856,
"size" : 327680,
"uuid" : "515122a4-5c70-3c05-9078-3f59e07e3c50",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/special\/_ufuncs_cxx.cpython-311-darwin.so",
"name" : "_ufuncs_cxx.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14092484608,
"size" : 131072,
"uuid" : "d9f2ce41-1b87-322b-86e9-071b54ebbf6f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/special\/_cdflib.cpython-311-darwin.so",
"name" : "_cdflib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14375010304,
"size" : 180224,
"uuid" : "2b8c8172-7dfa-3482-81b3-ece648557d2e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/special\/_specfun.cpython-311-darwin.so",
"name" : "_specfun.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6369476608,
"size" : 32768,
"uuid" : "02ab43e3-c90b-3f6f-8260-f762c68bb64f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/special\/_comb.cpython-311-darwin.so",
"name" : "_comb.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13280788480,
"size" : 65536,
"uuid" : "50f0bd5c-226e-3dc4-9dab-e8605a583a82",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/special\/_ellip_harm_2.cpython-311-darwin.so",
"name" : "_ellip_harm_2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14469545984,
"size" : 425984,
"uuid" : "ec26862d-9fed-365c-b4cf-50ccca4f3cb5",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/_distance_pybind.cpython-311-darwin.so",
"name" : "_distance_pybind.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14595670016,
"size" : 622592,
"uuid" : "007d1ea9-ff92-3a95-a349-88a02fee6c1a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/transform\/_rotation.cpython-311-darwin.so",
"name" : "_rotation.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6372638720,
"size" : 32768,
"uuid" : "f906193b-4e10-324e-a5c0-a4654cdab0fa",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_direct.cpython-311-darwin.so",
"name" : "_direct.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6806097920,
"size" : 241656,
"uuid" : "9fea25a4-e8ca-3f3d-901c-a53ff2bc7217",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6806339584,
"size" : 53248,
"uuid" : "3b8268be-4e02-3b4a-8b41-baed2bbaacff",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6804873216,
"size" : 532476,
"uuid" : "96556ba0-9c34-326a-89f4-d3835de617ae",
"path" : "\/usr\/lib\/system\/libsystem_c.dylib",
"name" : "libsystem_c.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6806568960,
"size" : 32740,
"uuid" : "7d01a5f7-2dbb-36b1-b44d-04d289d8f4b0",
"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
"name" : "libsystem_platform.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6869110784,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.AppKit",
"size" : 20955136,
"uuid" : "49d8b1b6-0ea8-36ad-89fd-a41acf00a742",
"path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
"name" : "AppKit",
"CFBundleVersion" : "2575.20.21"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6902390784,
"CFBundleShortVersionString" : "1.600.0",
"CFBundleIdentifier" : "com.apple.SkyLight",
"size" : 5337088,
"uuid" : "f58ee474-0fae-374f-bdc5-ba206a6a611b",
"path" : "\/System\/Library\/PrivateFrameworks\/SkyLight.framework\/Versions\/A\/SkyLight",
"name" : "SkyLight"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6804570112,
"size" : 290816,
"uuid" : "9ea577db-73c2-39d8-9fc0-544fa595a142",
"path" : "\/usr\/lib\/system\/libdispatch.dylib",
"name" : "libdispatch.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6806798336,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 5197824,
"uuid" : "ae4610f8-7c5c-3484-858e-cae7457d206e",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "3107"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6995410944,
"CFBundleShortVersionString" : "2.1.1",
"CFBundleIdentifier" : "com.apple.HIToolbox",
"size" : 3178496,
"uuid" : "738685cb-aca1-3dfe-91c5-192bab97a042",
"path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
"name" : "HIToolbox"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6802661376,
"size" : 534452,
"uuid" : "6beafde4-b011-3e47-8aae-4d7b6e4bb7e8",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6805405696,
"size" : 581628,
"uuid" : "601f843f-71f1-30bb-88fb-55b131097d1d",
"path" : "\/usr\/lib\/libc++.1.dylib",
"name" : "libc++.1.dylib"
}
],
"sharedCache" : {
"base" : 6801850368,
"size" : 4753735680,
"uuid" : "f66bac4e-1e78-38af-b867-c1cf5daa0302"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.7G resident=0K(0%) swapped_out_or_unallocated=1.7G(100%)\nWritable regions: Total=16.8G written=9059K(0%) resident=9059K(0%) swapped_out=0K(0%) unallocated=16.8G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG backing stores 9808K 2 \nCG image 1488K 70 \nColorSync 592K 31 \nCoreAnimation 3200K 177 \nCoreGraphics 272K 17 \nCoreServices 624K 2 \nCoreUI image data 3200K 47 \nFoundation 32K 2 \nKernel Alloc Once 32K 1 \nMALLOC 14.3G 253 \nMALLOC guard page 288K 18 \nMach message 64K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 848K 53 \nStack 178.3M 54 \nStack Guard 56.0M 1 \nVM_ALLOCATE 1.2G 415 \nVM_ALLOCATE (reserved) 352.0M 7 reserved VM address space (unallocated)\n__AUTH 3684K 489 \n__AUTH_CONST 53.6M 704 \n__CTF 824 1 \n__DATA 29.0M 925 \n__DATA_CONST 31.3M 931 \n__DATA_DIRTY 2000K 254 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__LINKEDIT 622.6M 223 \n__OBJC_RW 2354K 1 \n__TEXT 1.1G 948 \n__TPRO_CONST 272K 2 \ndyld private memory 288K 2 \nmapped file 289.1M 77 \nowned unmapped memory 829.9M 1 \npage table in kernel 9059K 1 \nshared memory 3824K 33 \n=========== ======= ======= \nTOTAL 18.9G 5754 \nTOTAL, minus reserved VM space 18.6G 5754 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "812ede11dfd8f7e5e4a0ccdb709d6435be89c6c9",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "6297d96be2c9387df974efa4",
"factorPackIds" : {
},
"deploymentId" : 240000032
},
{
"rolloutId" : "652eff3d1bce5442b8d753c9",
"factorPackIds" : {
},
"deploymentId" : 240000009
}
],
"experiments" : [
]
}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs
Opened emdb35243_ODV as #1, grid size 600,600,600, pixel 1.35, shown at level
0.32, step 1, values float32
Opened emdb43590_BV as #2, grid size 700,700,700, pixel 1.41, shown at level
0.203, step 1, values float32
Opened J1663_FE as #3, grid size 360,360,360, pixel 2.37, shown at level
0.255, step 1, values float32
Opened J1671_PE z flip as #4, grid size 360,360,360, pixel 2.37, shown at
level 0.0763, step 1, values float32
Opened J1770_FE as #5, grid size 360,360,360, pixel 2.19, shown at level
0.214, step 1, values float32
Log from Tue Dec 24 23:20:40 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs
Opened emdb35243_ODV as #1, grid size 600,600,600, pixel 1.35, shown at level
0.284, step 1, values float32
Opened emdb43590_BV as #2, grid size 700,700,700, pixel 1.41, shown at level
0.159, step 1, values float32
Opened J1663_FE as #4, grid size 360,360,360, pixel 2.37, shown at level
0.0733, step 1, values float32
Opened J1671_PE z flip as #5, grid size 360,360,360, pixel 2.37, shown at
level 0.0913, step 1, values float32
Opened J1748_FE as #3, grid size 588,588,588, pixel 1.34, shown at level
0.0321, step 1, values float32
Log from Tue Dec 24 17:47:32 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs
Opened emdb35243_ODV as #1, grid size 600,600,600, pixel 1.35, shown at level
0.284, step 1, values float32
Opened emdb43590_BV as #2, grid size 700,700,700, pixel 1.41, shown at level
0.0696, step 1, values float32
Opened J1663_FE as #4, grid size 360,360,360, pixel 2.37, shown at level
0.0908, step 1, values float32
Opened J1671_PE z flip as #5, grid size 360,360,360, pixel 2.37, shown at
level 0.0913, step 1, values float32
Log from Tue Dec 24 14:48:02 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs
Opened emdb35243_ODV as #1, grid size 600,600,600, pixel 1.35, shown at level
0.229, step 1, values float32
Opened emdb43590_BV as #2, grid size 700,700,700, pixel 1.41, shown at level
0.167, step 1, values float32
Opened J1663_FE as #4, grid size 360,360,360, pixel 2.37, shown at level
0.254, step 1, values float32
Opened J1671_PE z flip as #5, grid size 360,360,360, pixel 2.37, shown at
level 0.109, step 1, values float32
Log from Tue Dec 24 14:33:25 2024 Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P32_J53_002_volume_map.mrc
Opened cryosparc_P32_J53_002_volume_map.mrc as #1, grid size 720,720,720,
pixel 1.06, shown at step 1, values float32
> volume #1 region 0,0,0,719,719,719 step 4
[Repeated 1 time(s)]
> volume #1 step 1
> volume #1 change image level -0.02425,0 level 0.1837,0.8 level 0.3523,1
> volume #1 level 0.151
Drag select of 1 cryosparc_P32_J53_002_volume_map.mrc
> select clear
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1668_003_volume_map.mrc
Opened cryosparc_P23_J1668_003_volume_map.mrc as #2, grid size 360,360,360,
pixel 2.37, shown at level 0.334, step 2, values float32
> hide #!1 models
> volume #2 step 1
> volume #2 level 0.2509
> ui mousemode right clip
> ui mousemode right translate
> volume #2 level 0.2417
> volume #2 level 0.2094
> volume #2 level 0.2532
> open emdb:43590\
Fetching url
ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-43590\/map/emd_43590\\.map.gz
failed:
> open emdb:43590
Summary of feedback from opening 43590 fetched from emdb
---
notes | Fetching compressed map 43590 from ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-43590/map/emd_43590.map.gz
Fetching map header 43590 from
ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-43590/header/emd-43590.xml
Opened emdb 43590 as #3, grid size 700,700,700, pixel 1.41, shown at step 1,
values float32
> volume #3 region 0,0,0,699,699,699 step 4
[Repeated 1 time(s)]
> volume #3 step 1
> volume #3 change image level -0.05584,0 level 0.4551,0.8 level 0.773,1
> hide #!3 models
> show #!3 models
> hide #!2 models
> ui mousemode right clip
> ui mousemode right translate
> open emdb:43591
Summary of feedback from opening 43591 fetched from emdb
---
notes | Fetching compressed map 43591 from ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-43591/map/emd_43591.map.gz
Fetching map header 43591 from
ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-43591/header/emd-43591.xml
Opened emdb 43591 as #4, grid size 384,384,384, pixel 1.41, shown at level
0.225, step 2, values float32
> close #4
> close #1
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> open emdb:35243
Opened emdb 35243 as #1, grid size 600,600,600, pixel 1.35, shown at level
0.35, step 4, values float32
> close #2
> rename #1 emdb35243_ODV
> rename #3 emdb43590 id #2
> rename #2 emdb43590_BV
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1671_004_volume_map.mrc
Opened cryosparc_P23_J1671_004_volume_map.mrc as #3, grid size 360,360,360,
pixel 2.37, shown at level 0.355, step 2, values float32
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1663_003_volume_map.mrc
Opened cryosparc_P23_J1663_003_volume_map.mrc as #4, grid size 360,360,360,
pixel 2.37, shown at level 0.302, step 2, values float32
> hide #!4 models
> hide #!3 models
> rename #3 J1671_PE
> rename #4 J1663_FE
> ui tool show "Fit in Map"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> fitmap #1 inMap #2
Fit map emdb35243_ODV in map emdb43590_BV using 42321 points
correlation = 0.6504, correlation about mean = 0.07068, overlap = 3677
steps = 840, shift = 215, angle = 14.7 degrees
Position of emdb35243_ODV (#1) relative to emdb43590_BV (#2) coordinates:
Matrix rotation and translation
0.97285467 0.11356563 -0.20163492 106.14728499
-0.13398831 0.98682657 -0.09066670 173.53911084
0.18868208 0.11522224 0.97525530 66.06041994
Axis 0.40690739 -0.77140072 -0.48925178
Axis point 69.18299426 0.00000000 765.33059572
Rotation angle (degrees) 14.65465662
Shift along axis -122.99625756
> fitmap #1 inMap #2
Fit map emdb35243_ODV in map emdb43590_BV using 42321 points
correlation = 0.6504, correlation about mean = 0.07071, overlap = 3677
steps = 104, shift = 0.0146, angle = 0.00468 degrees
Position of emdb35243_ODV (#1) relative to emdb43590_BV (#2) coordinates:
Matrix rotation and translation
0.97283638 0.11360386 -0.20170163 106.14959138
-0.13402943 0.98682367 -0.09063750 173.53917511
0.18874717 0.11520941 0.97524422 66.03781833
Axis 0.40672513 -0.77147305 -0.48928928
Axis point 69.36205442 0.00000000 764.99261400
Rotation angle (degrees) 14.65831075
Shift along axis -123.01868679
> fitmap #1 inMap #2
Fit map emdb35243_ODV in map emdb43590_BV using 42321 points
correlation = 0.6504, correlation about mean = 0.07066, overlap = 3677
steps = 60, shift = 0.0202, angle = 0.00485 degrees
Position of emdb35243_ODV (#1) relative to emdb43590_BV (#2) coordinates:
Matrix rotation and translation
0.97285464 0.11356683 -0.20163440 106.14869030
-0.13397976 0.98683234 -0.09061650 173.52336845
0.18868832 0.11517161 0.97526008 66.07751356
Axis 0.40674044 -0.77147333 -0.48927612
Axis point 69.15375523 0.00000000 765.29725022
Rotation angle (degrees) 14.65346616
Shift along axis -123.02383462
> select add #2
4 models selected
> select add #1
6 models selected
> select subtract #2
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.17627,0.98434,-0.00073339,8.4342,-0.98191,0.17589,0.070127,791.23,0.069158,-0.011641,0.99754,158.34
> fitmap #1 inMap #2
Fit map emdb35243_ODV in map emdb43590_BV using 42321 points
correlation = 0.8508, correlation about mean = 0.2973, overlap = 5847
steps = 124, shift = 16.6, angle = 5.06 degrees
Position of emdb35243_ODV (#1) relative to emdb43590_BV (#2) coordinates:
Matrix rotation and translation
0.22884137 0.97346373 0.00000023 6.56644567
-0.97346373 0.22884137 0.00000059 795.07225194
0.00000052 -0.00000036 1.00000000 179.58410153
Axis -0.00000048 -0.00000015 -1.00000000
Axis point 505.10857801 393.39162659 0.00000000
Rotation angle (degrees) 76.77113185
Shift along axis -179.58422442
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> volume #1 step 1
> ui mousemode right rotate
> ui mousemode right translate
> select subtract #1
Nothing selected
> volume #3 level 0.2279
> select add #3
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #3,-0.62102,0.77799,-0.095165,399.88,0.76736,0.62824,0.12834,-223.39,0.15964,0.0066773,-0.98715,777.94
> ui mousemode right "translate selected models"
Drag select of 1 emdb35243_ODV , 2 emdb43590_BV , 3 J1671_PE
> select clear
> select subtract #3
Nothing selected
> select add #3
2 models selected
> view matrix models
> #3,-0.62102,0.77799,-0.095165,386.59,0.76736,0.62824,0.12834,-139.06,0.15964,0.0066773,-0.98715,840.43
> ui mousemode right "rotate selected models"
> view matrix models
> #3,-0.59828,0.78575,0.15701,265.87,0.79956,0.59829,0.052522,-107.63,-0.05267,0.15696,-0.9862,866.45
> ui mousemode right "translate selected models"
> view matrix models
> #3,-0.59828,0.78575,0.15701,346.36,0.79956,0.59829,0.052522,-134.36,-0.05267,0.15696,-0.9862,880.56
> view matrix models
> #3,-0.59828,0.78575,0.15701,-3.4192,0.79956,0.59829,0.052522,-21.834,-0.05267,0.15696,-0.9862,804.23
> vflip #3
Unknown command: vflip #3
> volume flip #3
Opened J1671_PE z flip as #5, grid size 360,360,360, pixel 2.37, shown at step
1, values float32
> close #3
> ui mousemode right "rotate selected models"
> select add #5
2 models selected
> view matrix models
> #5,-0.98925,0.0012409,-0.14622,625.6,0.060453,-0.90704,-0.41668,1132.8,-0.13315,-0.42104,0.89722,289.05
> ui mousemode right "translate selected models"
> view matrix models
> #5,-0.98925,0.0012409,-0.14622,983.74,0.060453,-0.90704,-0.41668,1047,-0.13315,-0.42104,0.89722,347.49
> ui mousemode right "rotate selected models"
> view matrix models
> #5,-0.9746,0.21646,-0.05741,848.26,-0.17632,-0.89974,-0.39923,1137.4,-0.13807,-0.37897,0.91505,324.12
> view matrix models
> #5,0.015509,0.99968,0.019979,59.911,-0.99511,0.013483,0.097818,887.14,0.097517,-0.021399,0.995,37.586
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> fitmap #5 inMap #1
Fit map J1671_PE z flip in map emdb35243_ODV using 1058456 points
correlation = 0.7675, correlation about mean = 0.06833, overlap = 1.003e+05
steps = 264, shift = 16.4, angle = 7.76 degrees
Position of J1671_PE z flip (#5) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.95303348 0.30286496 0.00002327 -130.17331272
-0.30286496 0.95303348 0.00003703 127.93398000
-0.00001097 -0.00004234 1.00000000 -121.40095851
Axis -0.00013103 0.00005653 -0.99999999
Axis point 347.39215679 483.62545297 0.00000000
Rotation angle (degrees) 17.62976098
Shift along axis 121.42524514
> view matrix models
> #5,0.30902,0.29306,0.90478,-145.34,-0.83128,-0.37894,0.40666,837.38,0.46203,-0.87779,0.12651,604.39
> undo
> select add #5
3 models selected
> select subtract #5
Nothing selected
> ui mousemode right rotate
> ui mousemode right translate
> show #!4 models
> select add #4
2 models selected
> ui mousemode right "translate selected models"
> view matrix models #4,1,0,0,344.93,0,1,0,0.63352,0,0,1,128.18
> volume #4 level 0.2379
> view matrix models #4,1,0,0,81.692,0,1,0,-19.877,0,0,1,125.49
> view matrix models #4,1,0,0,83.558,0,1,0,70.413,0,0,1,133.11
> view matrix models #4,1,0,0,70.873,0,1,0,70.205,0,0,1,133.5
> fitmap #4 inMap #1
Fit map J1663_FE in map emdb35243_ODV using 99734 points
correlation = 0.83, correlation about mean = 0.228, overlap = 9730
steps = 88, shift = 14.2, angle = 0.0496 degrees
Position of J1663_FE (#4) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.22800509 -0.97365994 -0.00000874 722.74511445
0.97365994 0.22800508 0.00010883 -107.11178091
-0.00010397 -0.00003333 0.99999999 -59.46670416
Axis -0.00007300 0.00004890 1.00000000
Axis point 428.91462448 402.21523340 0.00000000
Rotation angle (degrees) 76.82034903
Shift along axis -59.52470265
> ui mousemode right zoom
> ui mousemode right rotate
> select subtract #4
Nothing selected
> ui mousemode right translate
> volume #2 level 0.2977
> volume #1 level 0.3465
> volume #4 level 0.2335
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> volume #4 step 1
> fitmap #4 inMap #1
Fit map J1663_FE in map emdb35243_ODV using 827535 points
correlation = 0.8296, correlation about mean = 0.234, overlap = 7.948e+04
steps = 44, shift = 0.055, angle = 0.0137 degrees
Position of J1663_FE (#4) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.22793154 -0.97367716 0.00001878 722.76413763
0.97367715 0.22793154 -0.00011550 -106.96571476
0.00010818 0.00004462 0.99999999 -59.55985998
Axis 0.00008222 -0.00004590 1.00000000
Axis point 428.83496900 402.26790985 0.00000000
Rotation angle (degrees) 76.82467682
Shift along axis -59.49552349
> fitmap #2 inMap #1
Fit map emdb43590_BV in map emdb35243_ODV using 3024743 points
correlation = 0.7983, correlation about mean = 0.1452, overlap = 3.651e+05
steps = 44, shift = 0.128, angle = 0.0297 degrees
Position of emdb43590_BV (#2) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.22934616 -0.97334492 0.00000038 772.16317142
0.97334492 0.22934616 -0.00000003 -188.52800554
-0.00000006 0.00000038 1.00000000 -179.71258188
Axis 0.00000021 0.00000022 1.00000000
Axis point 505.13813030 393.36165391 0.00000000
Rotation angle (degrees) 76.74141952
Shift along axis -179.71246293
> fitmap #4 inMap #1
Fit map J1663_FE in map emdb35243_ODV using 827535 points
correlation = 0.8296, correlation about mean = 0.234, overlap = 7.948e+04
steps = 36, shift = 0.0126, angle = 0.00531 degrees
Position of J1663_FE (#4) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.22793225 -0.97367699 -0.00000066 722.77597776
0.97367699 0.22793225 -0.00002493 -107.00856619
0.00002443 0.00000504 1.00000000 -59.50745513
Axis 0.00001539 -0.00001288 1.00000000
Axis point 428.86473096 402.25276864 0.00000000
Rotation angle (degrees) 76.82463471
Shift along axis -59.49495194
> fitmap #5 inMap #1
Fit map J1671_PE z flip in map emdb35243_ODV using 1058456 points
correlation = 0.7675, correlation about mean = 0.06833, overlap = 1.003e+05
steps = 96, shift = 0.0142, angle = 0.00165 degrees
Position of J1671_PE z flip (#5) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.95302877 0.30287977 0.00000058 -130.16785956
-0.30287977 0.95302877 0.00002874 127.93693847
0.00000815 -0.00002757 1.00000000 -121.42680505
Axis -0.00009296 -0.00001250 -1.00000000
Axis point 347.40797876 483.60691161 0.00000000
Rotation angle (degrees) 17.63065109
Shift along axis 121.43730542
> hide #!4 models
> show #!4 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> ui mousemode right clip
> volume #2 color white
> volume #2 color #ff9300
> volume #2 color #942192
> volume #1 color #ff40ff
> volume #1 color white
> volume #2 color white
> ui mousemode right translate
> volume #2 level 0.1926
> volume #1 level 0.2772
> volume #2 level 0.2234
> volume #2 level 0.29
> volume #1 level 0.3743
> volume #2 level 0.3284
> volume #5 color #ff2600
> volume #5 color #00fdff
> volume #5 color #7a81ff
> hide #!1 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> volume #5 level 0.2478
> volume #1 level 0.3951
> volume #4 level 0.2535
> hide #!2 models
> show #!2 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> show #!1 models
> hide #!2 models
> set bgColor white
> graphics silhouettes true
> lighting depthCue false
> lighting soft
> graphics bgColor white
> graphics silhouettes width 2.3
> volume #1 level 0.2287
> show #!2 models
> hide #!1 models
> volume #2 level 0.1747
> volume #2 level 0.2541
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> volume #5 level 0.1086
> volume #2 level 0.167
> save /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs includeMaps true
——— End of log from Tue Dec 24 14:33:25 2024 ———
opened ChimeraX session
> hide #!5 models
> color #2 #fffb00ff models
> hide #!1 models
> show #!4 models
> volume #4 level 0.1109
> volume #2 level 0.2362
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!1 models
> hide #!1 models
> show #!1 models
> show #!5 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!4 models
> show #!4 models
> hide #!5 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!4 models
> volume #1 level 0.2842
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> volume #2 level 0.2669
> show #!4 models
> volume #4 level 0.1666
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> hide #!1 models
> show #!1 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> show #!2 models
> hide #!1 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> show #!5 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!5 models
> show #!1 models
> hide #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> volume #4 level 0.09079
> hide #!4 models
> show #!5 models
> volume #2 level 0.1363
> volume #5 level 0.09125
> hide #!2 models
> show #!2 models
> show #!4 models
> hide #!5 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!4 models
> volume #2 level 0.003029
> volume #2 level 0.06965
> save /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs includeMaps true
——— End of log from Tue Dec 24 14:48:02 2024 ———
opened ChimeraX session
> ui tool show "Fit in Map"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
[Repeated 1 time(s)]
> show #!5 models
> show #!4 models
> show #!1 models
> fitmap #2 inMap #1
Fit map emdb43590_BV in map emdb35243_ODV using 14658219 points
correlation = 0.7541, correlation about mean = 0.4206, overlap = 6.34e+05
steps = 44, shift = 0.0918, angle = 0.00815 degrees
Position of emdb43590_BV (#2) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.22948454 -0.97331231 -0.00000019 772.07912980
0.97331231 0.22948454 0.00000002 -188.58027009
0.00000003 -0.00000019 1.00000000 -179.80414440
Axis -0.00000011 -0.00000011 1.00000000
Axis point 505.14652168 393.35360876 0.00000000
Rotation angle (degrees) 76.73327344
Shift along axis -179.80420481
> volume #2 level 0.1593
> fitmap #2 inMap #1
Fit map emdb43590_BV in map emdb35243_ODV using 6420765 points
correlation = 0.788, correlation about mean = 0.2153, overlap = 5.315e+05
steps = 40, shift = 0.0561, angle = 0.0102 degrees
Position of emdb43590_BV (#2) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.22965823 -0.97327134 0.00000041 771.97288598
0.97327134 0.22965823 0.00000005 -188.64582157
-0.00000014 0.00000039 1.00000000 -179.74825591
Axis 0.00000018 0.00000028 1.00000000
Axis point 505.15663052 393.34320391 0.00000000
Rotation angle (degrees) 76.72304870
Shift along axis -179.74817265
> fitmap #4 inMap #1
Fit map J1663_FE in map emdb35243_ODV using 3515214 points
correlation = 0.7547, correlation about mean = 0.4947, overlap = 1.23e+05
steps = 44, shift = 1.44, angle = 0.00292 degrees
Position of J1663_FE (#4) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.22797990 -0.97366584 0.00000032 722.75242081
0.97366584 0.22797990 -0.00001052 -107.05172737
0.00001017 0.00000271 1.00000000 -58.05938758
Axis 0.00000679 -0.00000506 1.00000000
Axis point 428.88300196 402.23914637 0.00000000
Rotation angle (degrees) 76.82183100
Shift along axis -58.05393872
> fitmap #5 inMap #1
Fit map J1671_PE z flip in map emdb35243_ODV using 2887742 points
correlation = 0.7439, correlation about mean = 0.3608, overlap = 1.359e+05
steps = 84, shift = 0.0126, angle = 0.0165 degrees
Position of J1671_PE z flip (#5) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.95294192 0.30315291 -0.00002329 -130.23084526
-0.30315291 0.95294192 0.00003337 128.08923520
0.00003231 -0.00002474 1.00000000 -121.44780533
Axis -0.00009584 -0.00009171 -0.99999999
Axis point 347.50822763 483.49288311 0.00000000
Rotation angle (degrees) 17.64707305
Shift along axis 121.44853799
> save /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs includeMaps true
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1748_004_volume_map.mrc
Opened cryosparc_P23_J1748_004_volume_map.mrc as #3, grid size 588,588,588,
pixel 1.34, shown at level 0.129, step 4, values float32
> hide #!4 models
> hide #!5 models
> hide #!3 models
> hide #!2 models
> show #!3 models
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> volume #3 step 1
> ui mousemode right clip
> ui mousemode right translate
> select add #3
3 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #3,0.40948,-0.77865,-0.47542,760.83,-0.71746,-0.59673,0.35938,744.31,-0.56353,0.19394,-0.80301,985.38
> view matrix models
> #3,0.32041,-0.69825,0.64014,244.66,-0.90173,-0.43184,-0.019699,928.51,0.2902,-0.57093,-0.768,934.07
> view matrix models
> #3,0.39371,-0.91284,-0.10826,648.9,-0.91524,-0.37831,-0.1386,968.12,0.085564,0.15365,-0.98441,830.02
> ui mousemode right "translate selected models"
> view matrix models
> #3,0.39371,-0.91284,-0.10826,762.28,-0.91524,-0.37831,-0.1386,1064.7,0.085564,0.15365,-0.98441,801.88
> ui mousemode right "rotate selected models"
> view matrix models
> #3,0.37861,-0.92556,-0.0013901,723.46,-0.91898,-0.37574,-0.11957,1056.3,0.11015,0.046549,-0.99282,838.31
> ui mousemode right "translate selected models"
> view matrix models
> #3,0.37861,-0.92556,-0.0013901,717.57,-0.91898,-0.37574,-0.11957,1053,0.11015,0.046549,-0.99282,889.03
> view matrix models
> #3,0.37861,-0.92556,-0.0013901,714.64,-0.91898,-0.37574,-0.11957,1041.5,0.11015,0.046549,-0.99282,889.68
> fitmap #3 inMap #1
Fit map cryosparc_P23_J1748_004_volume_map.mrc in map emdb35243_ODV using
2033906 points
correlation = 0.8586, correlation about mean = 0.213, overlap = 1.155e+05
steps = 176, shift = 23, angle = 7.82 degrees
Position of cryosparc_P23_J1748_004_volume_map.mrc (#3) relative to
emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.99578155 0.09175521 0.00000256 -23.45858541
0.09175519 -0.99578156 -0.00000778 761.14443305
0.00000183 0.00000798 -0.99999997 760.15790824
Axis 0.99892332 0.04637151 -0.00137005
Axis point 0.00000000 381.11520699 380.06436878
Rotation angle (degrees) 179.99954802
Shift along axis 10.82063276
> fitmap #3 inMap #1
Fit map cryosparc_P23_J1748_004_volume_map.mrc in map emdb35243_ODV using
2033906 points
correlation = 0.8586, correlation about mean = 0.2131, overlap = 1.155e+05
steps = 36, shift = 0.0092, angle = 0.00079 degrees
Position of cryosparc_P23_J1748_004_volume_map.mrc (#3) relative to
emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.99578150 0.09175583 0.00001530 -23.45998132
0.09175581 -0.99578151 -0.00000256 761.14824253
0.00001500 0.00000396 -0.99999997 760.15889297
Axis 0.99888925 0.04700335 -0.00330788
Axis point 0.00000000 381.12546248 380.04122309
Rotation angle (degrees) 179.99981308
Shift along axis 9.82808080
> select subtract #3
Nothing selected
> volume #3 level 0.03398
> volume #3 level 0.04519
> volume #3 color #3b8fff
> ui mousemode right clip
> ui mousemode right translate
> hide #!1 models
> volume #3 level 0.05546
> volume #4 level 0.1149
> volume #4 level 0.1236
> show #!4 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> volume #3 level 0.05173
> volume #3 level 0.03211
> volume #4 level 0.07328
> hide #!4 models
> show #!4 models
> hide #!4 models
> rename #3 J1748_FE
> show #!5 models
> hide #!5 models
> save /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs includeMaps true
——— End of log from Tue Dec 24 17:47:32 2024 ———
opened ChimeraX session
> show #!2 models
> show #!1 models
> hide #!2 models
> hide #!1 models
> volume #3 level 0.04733
> volume #3 level 0.06065
> ui mousemode right clip
> show #!1 models
> show #!2 models
> show #!5 models
> volume #5 level 0.1186
> volume #5 level 0.1111
> volume #2 level 0.1926
> show #!4 models
> volume #4 level 0.1535
> hide #!5 models
> close #4
> volume #2 level 0.2003
> volume #1 level 0.2218
> hide #!2 models
> hide #!3 models
> show #!2 models
> hide #!2 models
> show #!3 models
> volume #1 level 0.1698
> hide #!3 models
> volume #1 level 0.2252
> volume #1 level 0.2703
> hide #!5 models
> show #!3 models
> volume #3 level 0.06804
> volume #3 level 0.07359
> volume #3 level 0.05788
> ui tool show "Hide Dust"
> surface dust #3 size 8.04
> surface dust #3 size 8.8
> surface dust #3 size 18.45
> surface dust #3 size 18.75
> surface dust #3 size 37.37
> volume #1 level 0.2495
> volume #1 level 0.246
> surface dust #3 size 37.37
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> surface dust #1 size 8.1
> surface dust #1 size 8.02
> surface dust #1 size 20.2
> surface dust #1 size 18.89
> surface dust #1 size 23.12
> volume #2 level 0.2054
> volume #2 color #dfd9fc
> volume #2 color #c2cafd
> volume #2 color #f34d8f
> volume #2 color #3b8fff
> volume #2 color #7a81ff
> volume #2 color #d2d2d3
> volume #2 color #dfd9fc
> volume #2 color #c2cafd
> volume #2 color #f34d8f
> volume #2 color #235091
> volume #2 color #d2d2d3
> volume #2 color #d9776e
> volume #5 level 0.1409
> ui mousemode right rotate
> ui mousemode right translate
> surface dust #2 size 8.46
> surface dust #2 size 8.3
[Repeated 1 time(s)]
> transparency #3 50
> transparency #3 40
> volume #2 level 0.2403
> volume #3 level 0.06527
> volume #1 level 0.2595
> volume #1 color #c2cafd
> ui tool show "Hide Dust"
> surface dust #1 size 1.35
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> surface dust #5 size 14.2
> surface dust #5 size 15.03
> surface dust #5 size 37.91
> surface dust #1 size 12.83
> surface dust #1 size 13.96
> surface dust #1 size 33.45
> surface dust #1 size 14.19
> surface dust #1 size 27.82
> surface dust #1 size 33.45
> surface dust #1 size 58.26
> ui mousemode right clip
> volume #5 level 0.02913
> volume #5 level 0.1086
> volume #5 level 0.07634
> transparency #3 0
> volume #3 level 0.0158
> volume #3 level 0.03958
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1663_003_volume_map.mrc
Opened cryosparc_P23_J1663_003_volume_map.mrc as #4, grid size 360,360,360,
pixel 2.37, shown at level 0.302, step 2, values float32
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> volume #4 step 1
> volume #4 level 0.09233
> volume #4 level 0.1146
> ui mousemode right translate
> volume #4 level 0.0901
> ui mousemode right clip
> select add #4
3 models selected
> ui mousemode right "translate selected models"
> view matrix models #4,1,0,0,65.037,0,1,0,-9.76,0,0,1,122.44
> ui tool show "Fit in Map"
> surface dust #1 size 58.3
> surface dust #1 size 58.42
> surface dust #1 size 58.58
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
[Repeated 1 time(s)]
> fitmap #4 inMap #3
Fit map cryosparc_P23_J1663_003_volume_map.mrc in map J1748_FE using 3557522
points
correlation = 0.4347, correlation about mean = -0.02198, overlap = 1.693e+04
steps = 188, shift = 24, angle = 3.93 degrees
Position of cryosparc_P23_J1663_003_volume_map.mrc (#4) relative to J1748_FE
(#3) coordinates:
Matrix rotation and translation
0.33050798 -0.94178203 0.06173458 681.45164000
-0.94275723 -0.33251334 -0.02537203 979.22027943
0.04442248 -0.04981506 -0.99777009 818.62961298
Axis -0.81561934 0.57767311 -0.03254049
Axis point 0.00000000 734.69129100 391.17873063
Rotation angle (degrees) 179.14142847
Shift along axis -16.77451928
> view matrix models
> #4,0.99891,0.016612,0.043643,30.823,-0.014401,0.99862,-0.050483,34.399,-0.044421,0.049799,0.99777,106.43
> ui mousemode right "rotate selected models"
> view matrix models
> #4,0.99791,-0.016664,-0.062458,89.788,0.016304,0.99985,-0.0062726,2.309,0.062553,0.0052411,0.99803,79.721
> fitmap #4 inMap #3
Fit map cryosparc_P23_J1663_003_volume_map.mrc in map J1748_FE using 3557522
points
correlation = 0.4361, correlation about mean = -0.01796, overlap = 1.701e+04
steps = 152, shift = 17, angle = 1.78 degrees
Position of cryosparc_P23_J1663_003_volume_map.mrc (#4) relative to J1748_FE
(#3) coordinates:
Matrix rotation and translation
0.31830062 -0.94776499 -0.02064779 722.74851077
-0.94395812 -0.31887832 0.08520406 917.64991711
-0.08733756 -0.00762985 -0.99614958 857.77294072
Axis -0.81170878 0.58311312 0.03328592
Axis point 0.00000000 733.56123549 427.29369258
Rotation angle (degrees) 176.72179560
Shift along axis -23.01584556
> volume #4 level 0.1302
> ui mousemode right clip
> ui mousemode right "translate selected models"
> view matrix models
> #4,0.99618,0.0017832,-0.087354,122.51,-0.0024414,0.99997,-0.0074289,67.89,0.087338,0.0076138,0.99615,82.111
> view matrix models
> #4,0.99618,0.0017832,-0.087354,111.55,-0.0024414,0.99997,-0.0074289,66.848,0.087338,0.0076138,0.99615,83.851
> ui mousemode right "rotate selected models"
> view matrix models
> #4,0.99989,-0.012706,0.0079521,78.608,0.012717,0.99992,-0.0013316,58.009,-0.0079345,0.0014326,0.99997,125.58
> ui mousemode right "translate selected models"
> view matrix models
> #4,0.99989,-0.012706,0.0079521,73.359,0.012717,0.99992,-0.0013316,57.418,-0.0079345,0.0014326,0.99997,127
> fitmap #4 inMap #3
Fit map cryosparc_P23_J1663_003_volume_map.mrc in map J1748_FE using 1934742
points
correlation = 0.9722, correlation about mean = 0.8889, overlap = 4.877e+04
steps = 72, shift = 7.35, angle = 0.83 degrees
Position of cryosparc_P23_J1663_003_volume_map.mrc (#4) relative to J1748_FE
(#3) coordinates:
Matrix rotation and translation
0.31655931 -0.94857276 -0.00000334 663.27925709
-0.94857276 -0.31655929 -0.00000757 933.06974962
0.00000612 0.00000557 -1.00000003 819.98524864
Axis 0.81162632 -0.58417690 0.00025913
Axis point 0.00000000 705.23406850 409.88905627
Rotation angle (degrees) 179.99953615
Shift along axis -6.53039807
> select subtract #4
Nothing selected
> ui mousemode right translate
> volume #3 level 0.05385
> transparency #3 50
> transparency #3 0
> volume #3 level 0.051
> ui mousemode right clip
> volume #3 level 0.03007
> volume #3 level 0.04434
> volume #3 level 0.03958
> volume #3 level 0.04
> volume #3 level 0.042
> show #!2 models
> show #!1 models
> hide #!3 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> volume #1 level 0.2422
> volume #1 level 0.25
> volume #2 level 0.248
> ui mousemode right translate
> volume #2 level 0.275
> volume #1 level 0.24
> volume #2 level 0.28
> ui mousemode right clip
> ui mousemode right "clip rotate"
> ui mousemode right clip
> ui mousemode right "clip rotate"
> ui mousemode right clip
> ui tool show "Side View"
> ui mousemode right translate
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!5 models
> hide #!5 models
> show #!3 models
> show #!4 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!2 models
> hide #!1 models
> volume #4 level 0.1035
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!3 models
> volume #4 level 0.1146
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!3 models
> hide #!4 models
> show #!3 models
> show #!2 models
> show #!1 models
> hide #!3 models
> transparency #2 50
> transparency #2 40
> volume #1 level 0.2712
> show #!5 models
> hide #!5 models
> color #2 #d2d2d3ff models
> color #2 #c2cafdff models
> color #1 #f34d8fff models
> color #1 #c1153cff models
> color #1 #f34d8fff models
> color #1 white models
> color #1 #5f90e2ff models
> color #1 #74fad9ff models
> color #1 white models
> color #1 #71ed4eff models
> color #1 white models
> color #1 #6057e0ff models
> transparency #2 40
> transparency #2 0
> transparency #1 40
> transparency #2 40
> transparency #1 0
> color #1 #7f51e0ff models
> color #1 #5573e1ff models
> color #1 #4e5ce0ff models
> color #2 #c3b2e9ff models
> color #2 #c9b8eaff models
> color #2 #7a81ffff models
> color #2 #fefefeff models
> color #2 white models
> transparency #2 0
> color #2 #f6f0e1ff models
> color #2 #d2d2d3ff models
> color #2 #d2d2d366 models
> transparency #2 0
> transparency #1 40
> transparency #2 40
> transparency #1 40
> transparency #1 0
> lighting gentle
> lighting soft
> lighting gentle
> lighting flat
> lighting gentle
> lighting soft
> lighting gentle
> lighting soft
> color #1 #d2d2d3ff models
> color #2 #3b8fffff models
> color #2 #c2cafdff models
> color #2 #7a81ffff models
> transparency #1 40
> transparency #1 0
> transparency #2 40
> color #1 #fafcfbff models
> color #1 #f7eef5ff models
> color #1 #f1dcedff models
> color #1 #f9f3f0ff models
> color #1 #f8f7ebff models
> color #1 #edf8caff models
> color #1 #f0f8cbff models
> color #1 #f8f1d9ff models
> color #1 #f8efd7ff models
> color #1 #e1d8c3ff models
> color #1 #f2e9d2ff models
> color #1 #dfd7c2ff models
> color #1 #dbd3beff models
> color #1 #7a81ffff models
> color #2 #dbd3beff models
> transparency #2 40
> transparency #2 0
> transparency #1 40
> color #2 #d2e2d7ff models
> color #2 #c9e2c2ff models
> color #2 #dcd9e2ff models
> color #2 #f8f4ffff models
> color #2 #e4e0eaff models
> transparency #1 50
> transparency #1 35
> name view front
"front": invalid atom specifier
> view name front
> save /Users/ConstantinePetridis/Desktop/BV_ODV.png width 3000 height 1962
> supersample 4
> color #2 #8d8b91ff models
> color #2 #a3a1a8ff models
> transparency #1 35
> transparency #2 0
> color #2 #f7f5ffff models
> color #2 #cbc9d1ff models
> color #2 #cbc9d2ff models
> lighting soft
> lighting gentle
> lighting soft
> ui mousemode right rotate
> ui mousemode right zoom
> ui mousemode right rotate
> ui mousemode right translate
> ui mousemode right "clip rotate"
> ui mousemode right clip
> ui mousemode right translate
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> volume #1 level 0.3024
> color #1 #7a81ffff models
> color #1 #7a81ff00 models
> color #1 #7a81ff34 models
> color #1 #7a81ffff models
> ui mousemode right clip
> ui mousemode right "clip rotate"
> ui mousemode right clip
> ui mousemode right translate
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> hide #!2 models
> show #!1 models
> show #!4 models
> hide #!4 models
> show #!3 models
> hide #!3 models
> show #!2 models
> hide #!2 models
> volume #1 level 0.2885
> volume #1 level 0.2469
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> volume #2 level 0.2031
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!3 models
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!3 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!3 models
> hide #!2 models
> show #!3 models
> volume #1 level 0.3197
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> volume #3 level 0.05913
> volume #3 level 0.05722
> hide #!1 models
> show #!1 models
> hide #!3 models
> show #!3 models
> hide #!1 models
> volume #3 level 0.07815
> volume #3 level 0.08481
> volume #3 level 0.08
> hide #!1 models
> volume #3 level 0.1009
> show #!4 models
> volume #4 level 0.2261
> volume #4 level 0.235
> volume #3 level 0.09998
> volume #3 level 0.08856
> volume #4 level 0.2551
> volume #3 level 0.1019
> show #!4 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> close #3
> rename #4 J1663_FE
> rename #4 J1663_FE id #3
> rename #5 id #4
> save /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs includeMaps true
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1770_003_volume_map.mrc
Opened cryosparc_P23_J1770_003_volume_map.mrc as #5, grid size 360,360,360,
pixel 2.19, shown at level 0.277, step 2, values float32
> hide #!3 models
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> volume #5 step 1
> volume #5 level 0.1721
> show #!3 models
> hide #!4 models
> volume #5 level 0.2115
> volume #5 level 0.2174
> ui mousemode right "rotate selected models"
> select add #5
3 models selected
> view matrix models
> #5,0.95745,0.28858,0.0043312,-98.953,0.28414,-0.93989,-0.18942,741.06,-0.050591,0.18259,-0.98189,876.7
> ui mousemode right "translate selected models"
> view matrix models
> #5,0.95745,0.28858,0.0043312,-4.1809,0.28414,-0.93989,-0.18942,804.6,-0.050591,0.18259,-0.98189,869.49
> ui mousemode right "rotate selected models"
> view matrix models
> #5,0.9971,0.066566,0.037008,52.351,0.073264,-0.97107,-0.22728,917.7,0.020808,0.22933,-0.97313,818.85
> view matrix models
> #5,0.99854,-0.036256,0.040116,90.834,-0.024169,-0.96292,-0.26869,972.29,0.048371,0.26733,-0.96239,787.99
> view matrix models
> #5,0.99559,-0.055166,-0.07586,153.79,-0.070768,-0.97259,-0.22149,972.33,-0.061562,0.22588,-0.97221,852.22
> ui mousemode right "translate selected models"
> view matrix models
> #5,0.99559,-0.055166,-0.07586,138.73,-0.070768,-0.97259,-0.22149,972.47,-0.061562,0.22588,-0.97221,837.2
> fitmap #5 inMap #3
Fit map cryosparc_P23_J1770_003_volume_map.mrc in map J1663_FE using 822201
points
correlation = 0.9965, correlation about mean = 0.9334, overlap = 9.029e+04
steps = 208, shift = 47.2, angle = 16.4 degrees
Position of cryosparc_P23_J1770_003_volume_map.mrc (#5) relative to J1663_FE
(#3) coordinates:
Matrix rotation and translation
0.99517678 0.09809776 0.00003947 -4.57853809
0.09809776 -0.99517678 -0.00003620 779.53497612
0.00003573 0.00003990 -1.00000000 819.70376405
Axis 0.99879463 0.04908453 0.00003744
Axis point 0.00000000 389.87217475 409.85938563
Rotation angle (degrees) 179.99781716
Shift along axis 33.72077697
> select subtract #5
Nothing selected
> ui mousemode right translate
> volume #5 level 0.2155
> volume #5 level 0.2135
> ui mousemode right clip
> ui mousemode right translate
> rename #5 J1770_FE
> save /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs includeMaps true
——— End of log from Tue Dec 24 23:20:40 2024 ———
opened ChimeraX session
> ui mousemode right clip
> show #!4 models
> volume #4 level 0.29
> hide #!4 models
> hide #!3 models
> show #!3 models
> hide #!5 models
> show #!5 models
> hide #!3 models
> show #!3 models
> hide #!5 models
> show #!5 models
> hide #!3 models
> show #!3 models
> hide #!5 models
> show #!5 models
> hide #!3 models
> show #!2 models
> volume #2 level 0.28
> show #!1 models
> hide #!5 models
> hide #!2 models
> show #!5 models
> hide #!5 models
> show #!5 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> ui tool show "Fit in Map"
> fitmap #5 inMap #1
Fit map J1770_FE in map emdb35243_ODV using 851116 points
correlation = 0.8483, correlation about mean = 0.2293, overlap = 8e+04
steps = 48, shift = 0.243, angle = 0.0164 degrees
Position of J1770_FE (#5) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.13132850 0.99133890 -0.00006754 -37.26648368
0.99133890 -0.13132851 -0.00003051 66.19760087
-0.00003911 -0.00006295 -1.00000000 760.18993780
Axis -0.75209153 -0.65905867 0.00001272
Axis point 0.00000000 49.43258156 380.09425290
Rotation angle (degrees) 179.99876430
Shift along axis -15.59062842
> fitmap #5 inMap #1
Fit map J1770_FE in map emdb35243_ODV using 851116 points
correlation = 0.8483, correlation about mean = 0.2294, overlap = 8e+04
steps = 36, shift = 0.00413, angle = 0.0029 degrees
Position of J1770_FE (#5) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.13135235 0.99133574 -0.00002496 -37.29061767
0.99133574 -0.13135236 -0.00001744 66.20215683
-0.00002057 -0.00002245 -1.00000000 760.16825748
Axis -0.75201734 -0.65914331 -0.00013191
Axis point 0.00000000 49.44453715 380.08733738
Rotation angle (degrees) 179.99980896
Shift along axis -15.69379233
> volume #1 level 0.3717
> fitmap #5 inMap #1
Fit map J1770_FE in map emdb35243_ODV using 851116 points
correlation = 0.8483, correlation about mean = 0.2294, overlap = 8e+04
steps = 36, shift = 0.0043, angle = 0.000951 degrees
Position of J1770_FE (#5) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.13135135 0.99133588 -0.00003949 -37.28663274
0.99133587 -0.13135136 -0.00002539 66.20350274
-0.00003036 -0.00003581 -1.00000000 760.17965366
Axis -0.75206738 -0.65908623 -0.00004758
Axis point 0.00000000 49.44186881 380.09087758
Rotation angle (degrees) 179.99960320
Shift along axis -15.62792528
> volume #1 level 0.3405
> view front
> volume #5 color #7a81ff
> volume #4 level 0.2677
> volume #5 level 0.1741
> volume #3 level 0.1949
> volume #1 color #d2d2d3
> volume #1 color #7a81ff
> volume #5 color #dfd9fc
> volume #5 color #c2cafd
> volume #5 color #dbd3be
> volume #5 color #d2d2d3
> volume #5 color #d2d2d37f
> view front
> volume #5 color #d2d2d3cb
> volume #5 color #d2d2d3bf
> volume #4 color #c1153c
> view front
> ui mousemode right "clip rotate"
> ui mousemode right clip
> volume #1 level 0.3058
> hide #!1 models
> volume #5 color #d2d2d3
> volume #5 color #7a81ff
> volume #5 color #dbd3be
> volume #5 color #f34d8f
> volume #5 color #c2cafd
> volume #5 color #75ff79
> volume #5 color #c1153c
> volume #5 color #7a81ff
> volume #5 level 0.2135
> volume #5 level 0.22
> volume #1 level 0.3301
> volume #1 color #c1153c
> volume #1 level 0.357
> volume #5 level 0.2296
> volume #2 level 0.3571
> volume #3 level 0.275
> volume #5 level 0.22
> fitmap #2 inMap #5
Fit map emdb43590_BV in map J1770_FE using 1970231 points
correlation = 0.7092, correlation about mean = 0.03558, overlap = 1.518e+05
steps = 132, shift = 5.67, angle = 0.682 degrees
Position of emdb43590_BV (#2) relative to J1770_FE (#5) coordinates:
Matrix rotation and translation
0.99488447 0.10096665 -0.00326011 -145.50060887
0.10099751 -0.99482187 0.01135595 832.26782874
-0.00209666 -0.01162712 -0.99993021 951.49886823
Axis -0.99872025 -0.05055749 0.00134102
Axis point 0.00000000 422.55694258 473.23931095
Rotation angle (degrees) 179.34072539
Shift along axis 104.51300645
> fitmap #2 inMap #5
Fit map emdb43590_BV in map J1770_FE using 1970231 points
correlation = 0.7092, correlation about mean = 0.03558, overlap = 1.518e+05
steps = 48, shift = 0.00365, angle = 0.0012 degrees
Position of emdb43590_BV (#2) relative to J1770_FE (#5) coordinates:
Matrix rotation and translation
0.99488316 0.10097978 -0.00325450 -145.50768201
0.10101054 -0.99482072 0.01134053 832.26735347
-0.00209248 -0.01161124 -0.99993040 951.48602193
Axis -0.99871992 -0.05056405 0.00133857
Axis point 0.00000000 422.55359730 473.23634432
Rotation angle (degrees) 179.34162287
Shift along axis 104.51223978
> select add #2
3 models selected
> ui mousemode right "translate selected models"
> view matrix models
> #2,1,0.002004,-0.0020819,-1.4849,-0.0020281,0.99993,-0.011639,4.0605,0.0020584,0.011643,0.99993,-6.8056
> fitmap #2 inMap #5
Fit map emdb43590_BV in map J1770_FE using 1970231 points
correlation = 0.7093, correlation about mean = 0.03518, overlap = 1.518e+05
steps = 56, shift = 4.96, angle = 0.332 degrees
Position of emdb43590_BV (#2) relative to J1770_FE (#5) coordinates:
Matrix rotation and translation
0.99484759 0.10105423 -0.00814346 -144.38287979
0.10112086 -0.99484008 0.00823324 833.24382317
-0.00726943 -0.00901429 -0.99993295 952.76155498
Axis -0.99871104 -0.05061005 0.00385835
Axis point 0.00000000 422.33880063 474.28921584
Rotation angle (degrees) 179.50525064
Shift along axis 105.70234875
> select subtract #2
Nothing selected
> select add #2
3 models selected
> view matrix models
> #2,0.99997,0.0020761,-0.0072544,4.7579,-0.0021416,0.99996,-0.009031,6.2994,0.0072354,0.0090463,0.99993,-13.222
> fitmap #2 inMap #5
Fit map emdb43590_BV in map J1770_FE using 1970231 points
correlation = 0.7092, correlation about mean = 0.03557, overlap = 1.518e+05
steps = 92, shift = 4.21, angle = 0.327 degrees
Position of emdb43590_BV (#2) relative to J1770_FE (#5) coordinates:
Matrix rotation and translation
0.99488426 0.10096572 -0.00335336 -145.47747429
0.10099761 -0.99482217 0.01132865 832.27857560
-0.00219219 -0.01160938 -0.99993021 951.53886178
Axis -0.99872020 -0.05055728 0.00138827
Axis point 0.00000000 422.55644599 473.26057510
Rotation angle (degrees) 179.34201733
Shift along axis 104.53454580
> view matrix models
> #2,1,0.0019899,-0.0021815,1.6101,-0.0020151,0.99993,-0.011637,7.3811,0.0021581,0.011641,0.99993,-12.102
> select subtract #2
Nothing selected
> ui mousemode right clip
> ui mousemode right "clip rotate"
> ui mousemode right clip
> ui mousemode right "clip rotate"
> ui mousemode right zone
> ui mousemode right clip
> hide #!2 models
> show #!2 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!1 models
> volume #2 level 0.3298
> volume #1 level 0.3739
> show #!1 models
> hide #!5 models
> view front
> volume #2 color #cbc9d261
> volume #2 color #cbc9d292
> volume #2 color #cbc9d280
> save /Users/ConstantinePetridis/Desktop/BV_ODV_front.png width 3000 height
> 1873 supersample 4
> name view diagonal
"diagonal": invalid atom specifier
> view name diagonal
> save /Users/ConstantinePetridis/Desktop/BV_ODV_diag.png width 3000 height
> 1873 supersample 4
> view name top
> save /Users/ConstantinePetridis/Desktop/BV_ODV_top.png width 3000 height
> 1873 supersample 4
> view front
> save /Users/ConstantinePetridis/Desktop/BV_ODV_slice.png width 3000 height
> 1873 supersample 4
> lighting gentle
> lighting soft
> save /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs includeMaps true
> volume #1 level 0.3635
> volume #1 level 0.369
> volume #1 level 0.368
> volume #1 level 0.367
> volume #1 level 0.366
> volume #1 level 0.365
> volume #1 level 0.363
> volume #1 level 0.364
> volume #1 level 0.365
> save /Users/ConstantinePetridis/Desktop/BV_ODV_slice.png width 3000 height
> 1873 supersample 4
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> volume #1 level 0.369
> volume #1 level 0.37
> volume #1 level 0.371
> volume #1 level 0.37
> volume #1 level 0.372
> volume #1 level 0.37
> volume #1 level 0.371
> volume #1 level 0.37
> volume #1 level 0.371
> volume #1 level 0.37
> volume #1 level 0.371
> volume #1 level 0.37
> save /Users/ConstantinePetridis/Desktop/BV_ODV_slice.png width 3000 height
> 1873 supersample 4
> show #!5 models
> hide #!2 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!2 models
> color #2 #cbc9d2ff models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> volume #5 level 0.218
> ui tool show "Hide Dust"
> surface dust #2 size 1.41
> surface dust #5 size 13.13
> surface dust #5 size 12.94
> surface dust #5 size 14.56
> surface dust #5 size 13.84
> surface dust #5 size 24.07
> surface dust #1 size 58.58
> surface dust #2 size 1.41
> surface dust #2 size 1.53
> surface dust #2 size 7.02
> volume #2 color #cbc9d280
> surface dust #2 size 7.9
> surface dust #2 size 13.04
> volume #2 color #cbc9d2
> surface dust #1 size 58.26
> surface dust #1 size 23.5
> volume #2 color #6f7073
> undo
> volume #2 color #d2d2d3
> volume #2 color #d2d2d37f
> volume #2 level 0.328
> volume #2 level 0.329
> volume #2 level 0.33
> volume #2 level 0.329
> surface dust #1 size 23.91
> surface dust #2 size 12.41
> surface dust #2 size 13.27
> volume #2 level 0.3136
> volume #2 level 0.315
> surface dust #2 size 13.71
> surface dust #2 size 7.26
> surface dust #1 size 22.74
> surface dust #1 size 24.72
> volume #5 level 0.2003
> volume #5 level 0.2042
> volume #5 level 0.2022
> save /Users/ConstantinePetridis/Desktop/BV_ODV_slice2.png width 3000 height
> 1873 supersample 4
> name view slice
"slice": invalid atom specifier
> view name slice
> volume #2 color #d2d2d3
> view name slice
> volume #5 level 0.203
> volume #5 level 0.205
> volume #5 level 0.215
> volume #5 level 0.213
> surface dust #5 size 11.7
> surface dust #5 size 11.51
> surface dust #5 size 15.31
> surface dust #5 size 15.57
> surface dust #5 size 22.14
> surface dust #5 size 21.05
> surface dust #5 size 14.56
> surface dust #5 size 15
> surface dust #5 size 15.5
> volume #5 level 0.215
> volume #5 level 0.22
> volume #5 level 0.215
> volume #5 level 0.214
> volume #5 level 0.21
> volume #5 level 0.212
> volume #2 color #d2d2d382
> volume #2 color #d2d2d381
> volume #2 color #d2d2d380
> volume #5 color #7a81ff82
> volume #5 color #7a81ff80
> volume #5 color #7a81ff
> volume #5 color #7d82ff
> volume #5 color #9096ff
> volume #5 color #8b90ff
> volume #5 color #8186ee
> volume #5 color #928cee
> volume #5 color #8687ee
> volume #5 color #7a81ff
> volume #5 color #8687ee
> volume #5 color #7a81ff
> volume #5 color #8687ee
> volume #5 color #7a81ff
> volume #5 color #8687ee
> volume #5 color #8d8efd
> volume #5 color #8c8dfc
> save /Users/ConstantinePetridis/Desktop/FE_slice.png width 3000 height 1873
> supersample 4
> view front
> save /Users/ConstantinePetridis/Desktop/FE_front.png width 3000 height 1873
> supersample 4
> view side
Expected an objects specifier or a view name or a keyword
> view top
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> save /Users/ConstantinePetridis/Desktop/FE_top.png width 3000 height 1873
> supersample 4
> view diagonal
> save /Users/ConstantinePetridis/Desktop/FE_diag.png width 3000 height 1873
> supersample 4
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1558_003_volume_map.mrc
Opened cryosparc_P23_J1558_003_volume_map.mrc as #6, grid size 256,256,256,
pixel 3.33, shown at level 0.217, step 1, values float32
> hide #!5 models
> volume #6 level 0.3811
> volume #6 level 0.3328
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1556_003_volume_map.mrc
Opened cryosparc_P23_J1556_003_volume_map.mrc as #7, grid size 256,256,256,
pixel 3.33, shown at level 0.21, step 1, values float32
> volume #7 level 0.4989
> show #!5 models
> select add #7
3 models selected
> ui mousemode right "translate selected models"
> view matrix models #7,1,0,0,-16.351,0,1,0,47.951,0,0,1,138.25
> view matrix models #7,1,0,0,29.518,0,1,0,46.948,0,0,1,111.17
> view matrix models #7,1,0,0,25.184,0,1,0,58.062,0,0,1,121.54
> view matrix models #7,1,0,0,26.356,0,1,0,61.724,0,0,1,120.42
> volume #7 level 1.549
> view matrix models #7,1,0,0,-5.8723,0,1,0,212.92,0,0,1,115.91
> view matrix models #7,1,0,0,21.885,0,1,0,66.685,0,0,1,255.9
> view matrix models #7,1,0,0,51.063,0,1,0,63.802,0,0,1,118.77
> view matrix models #7,1,0,0,62.627,0,1,0,64.199,0,0,1,115.71
> volume #5 level 0.145
> show #!2 models
> volume #2 level 0.192
> volume #5 level 0.212
> view matrix models #7,1,0,0,62.623,0,1,0,64.137,0,0,1,124.05
> volume #7 level 1.238
> volume #2 level 0.2791
> volume #2 level 0.2433
> volume #2 color #d2d2d3
> select subtract #7
Nothing selected
> show #!5 models
> hide #!2 models
> close #6-7
> view slice
> ui mousemode right clip
> open /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1772_map_locres.mrc
Opened cryosparc_P23_J1772_map_locres.mrc as #6, grid size 360,360,360, pixel
2.19, shown at level 15.3, step 2, values float32
> ui tool show "Surface Color"
> open /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1772_map_locres.mrc
Opened cryosparc_P23_J1772_map_locres.mrc as #7, grid size 360,360,360, pixel
2.19, shown at level 15.3, step 2, values float32
> close #7
> ui tool show "Color Zone"
> volume #6 level 34.88
> color sample #5.1 map #6 palette #ff0000:#ffffff:#0000ff
Map values for surface "surface": minimum 0, mean 3.268, maximum 84.67
Map values for surface "cap front": minimum 0, mean 3.597, maximum 75.98
> color sample #5.1 map #6 palette #ff0000:#ffffff:#0000ff
Map values for surface "surface": minimum 0, mean 3.268, maximum 84.67
Map values for surface "cap front": minimum 0, mean 3.597, maximum 75.98
> color sample #5.1 map #6 palette #0000ff:#00ff00:#ff0000
Map values for surface "surface": minimum 0, mean 3.268, maximum 84.67
Map values for surface "cap front": minimum 0, mean 3.597, maximum 75.98
> color sample #5.1 map #6 palette #0000ff:#00ff00:#ff0000
Map values for surface "surface": minimum 0, mean 3.268, maximum 84.67
Map values for surface "cap front": minimum 0, mean 3.597, maximum 75.98
> color sample #5.1 map #6 palette #0000ff:#00ff00:#ff0000
Map values for surface "surface": minimum 0, mean 3.268, maximum 84.67
Map values for surface "cap front": minimum 0, mean 3.597, maximum 75.98
> color sample #5.1 map #6 palette #0000ff:#00ff00:#ff0000
Map values for surface "surface": minimum 0, mean 3.268, maximum 84.67
Map values for surface "cap front": minimum 0, mean 3.597, maximum 75.98
> color sample #5.1 map #6 palette 4,#0000ff:8,#00ff00:12,#ff0000
Map values for surface "surface": minimum 0, mean 3.268, maximum 84.67
Map values for surface "cap front": minimum 0, mean 3.597, maximum 75.98
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> volume #6 level 13.26
> select add #6
3 models selected
> ui mousemode right "translate selected models"
> view matrix models #6,1,0,0,40.565,0,1,0,120.88,0,0,1,-18.957
> view matrix models #6,1,0,0,41.114,0,1,0,127.8,0,0,1,-119.02
> volume #6 level 8.559
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.79891,-0.6006,-0.0319,370.49,-0.60062,-0.79947,0.010071,1069.1,-0.031552,0.011114,-0.99944,738.08
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.79891,-0.6006,-0.0319,372.71,-0.60062,-0.79947,0.010071,1065,-0.031552,0.011114,-0.99944,940.36
> view matrix models
> #6,0.79891,-0.6006,-0.0319,414.56,-0.60062,-0.79947,0.010071,1058.5,-0.031552,0.011114,-0.99944,943.96
> view matrix models
> #6,0.79891,-0.6006,-0.0319,407.83,-0.60062,-0.79947,0.010071,1047.6,-0.031552,0.011114,-0.99944,923.68
> color sample #5.1 map #6 palette 4,#0000ff:8,#00ff00:12,#ff0000
Map values for surface "surface": minimum 0, mean 5.765, maximum 74.22
Map values for surface "cap front": minimum 0, mean 6.344, maximum 14.45
> show #!6 models
> select add #6
3 models selected
> select subtract #6
Nothing selected
> volume #6 level 11.07
> ui tool show "Fit in Map"
> fitmap #6 inMap #5
Fit map cryosparc_P23_J1772_map_locres.mrc in map J1770_FE using 235274 points
correlation = 0.622, correlation about mean = -0.02491, overlap = 3.607e+05
steps = 176, shift = 31.5, angle = 3.74 degrees
Position of cryosparc_P23_J1772_map_locres.mrc (#6) relative to J1770_FE (#5)
coordinates:
Matrix rotation and translation
0.72829231 -0.67899329 -0.09251157 390.10224659
0.67932068 0.73310920 -0.03277637 -151.45118045
0.09007602 -0.03897424 0.99517199 -23.78717197
Axis -0.00452220 -0.13322261 0.99107582
Axis point 388.57482759 419.00286192 0.00000000
Rotation angle (degrees) 43.25704092
Shift along axis -5.16228847
> volume #6 level 5.917
> select add #6
3 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.70474,-0.70639,-0.06603,498.29,-0.70626,-0.70735,0.029181,1038.5,-0.067319,0.026069,-0.99739,960.59
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.7101,-0.70395,0.014309,461.1,-0.70409,-0.71001,0.01201,1046,0.0017056,-0.018603,-0.99983,952.03
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.7101,-0.70395,0.014309,466.45,-0.70409,-0.71001,0.01201,1044.9,0.0017056,-0.018603,-0.99983,952.74
> view matrix models
> #6,0.7101,-0.70395,0.014309,469.04,-0.70409,-0.71001,0.01201,1051.1,0.0017056,-0.018603,-0.99983,951.55
> view matrix models
> #6,0.7101,-0.70395,0.014309,476.39,-0.70409,-0.71001,0.01201,1047.6,0.0017056,-0.018603,-0.99983,951.57
> fitmap #6 inMap #5
Fit map cryosparc_P23_J1772_map_locres.mrc in map J1770_FE using 713538 points
correlation = 0.42, correlation about mean = -0.02124, overlap = 6.456e+05
steps = 96, shift = 10.1, angle = 0.907 degrees
Position of cryosparc_P23_J1772_map_locres.mrc (#6) relative to J1770_FE (#5)
coordinates:
Matrix rotation and translation
0.62551415 -0.78013599 0.01094819 439.41706404
0.78021115 0.62548012 -0.00671941 -153.86127727
-0.00160582 0.01274498 0.99991748 -2.24018364
Axis 0.01247302 0.00804476 0.99988985
Axis point 380.02074921 380.80499582 0.00000000
Rotation angle (degrees) 51.28434410
Shift along axis 2.00314369
> color sample #5.1 map #6 palette 4,#0000ff:8,#00ff00:12,#ff0000
Map values for surface "surface": minimum 0, mean 6.769, maximum 84.46
Map values for surface "cap front": minimum 4.775, mean 6.84, maximum 14.92
> color sample #5.1 map #6 palette #0000ff:#00ff00:#ff0000
Map values for surface "surface": minimum 0, mean 6.769, maximum 84.46
Map values for surface "cap front": minimum 4.775, mean 6.84, maximum 14.92
> color sample #5.1 map #6 palette 3,#0000ff:6,#00ff00:9,#ff0000
Map values for surface "surface": minimum 0, mean 6.769, maximum 84.46
Map values for surface "cap front": minimum 4.775, mean 6.84, maximum 14.92
> fitmap #6 inMap #5
Fit map cryosparc_P23_J1772_map_locres.mrc in map J1770_FE using 713538 points
correlation = 0.42, correlation about mean = -0.02125, overlap = 6.456e+05
steps = 40, shift = 0.194, angle = 0.0295 degrees
Position of cryosparc_P23_J1772_map_locres.mrc (#6) relative to J1770_FE (#5)
coordinates:
Matrix rotation and translation
0.62537365 -0.78024819 0.01097844 439.53472662
0.78032286 0.62534576 -0.00623573 -153.90759639
-0.00199990 0.01246638 0.99992028 -1.94177383
Axis 0.01198287 0.00831552 0.99989363
Axis point 380.09000393 380.79996395 0.00000000
Rotation angle (degrees) 51.29433191
Shift along axis 2.04549844
> volume #6 level 11.86
> view matrix models
> #6,0.69955,-0.71451,0.010273,486.54,-0.71458,-0.69951,0.0073239,1048.3,0.0019532,-0.012465,-0.99992,942.21
> fitmap #6 inMap #5
Fit map cryosparc_P23_J1772_map_locres.mrc in map J1770_FE using 194529 points
correlation = 0.6868, correlation about mean = -0.005782, overlap = 3.239e+05
steps = 176, shift = 6.12, angle = 3.47 degrees
Position of cryosparc_P23_J1772_map_locres.mrc (#6) relative to J1770_FE (#5)
coordinates:
Matrix rotation and translation
0.60157471 -0.79878007 -0.00763050 470.20395732
0.79733311 0.60101206 -0.05517589 -133.26339412
0.04865942 0.02710837 0.99844748 -32.85683310
Axis 0.05145263 -0.03519828 0.99805496
Axis point 369.71797118 404.49193271 0.00000000
Rotation angle (degrees) 53.09305594
Shift along axis -3.90905469
> view matrix models
> #6,0.67755,-0.73536,-0.013089,520.23,-0.73386,-0.67713,0.054182,1032.8,-0.048706,-0.027105,-0.99845,972.09
> view matrix models
> #6,0.67755,-0.73536,-0.013089,519.12,-0.73386,-0.67713,0.054182,1029.5,-0.048706,-0.027105,-0.99845,972.47
> color sample #5.1 map #6 palette 3,#0000ff:6,#00ff00:9,#ff0000
Map values for surface "surface": minimum 0, mean 6.738, maximum 83.65
Map values for surface "cap front": minimum 0, mean 6.805, maximum 12.79
> volume #6 level 7.105
> view matrix models
> #6,0.67755,-0.73536,-0.013089,514.54,-0.73386,-0.67713,0.054182,1021.4,-0.048706,-0.027105,-0.99845,972.32
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.674,-0.73835,-0.023878,521.69,-0.73736,-0.67436,0.039227,1028,-0.045066,-0.0088322,-0.99894,963.9
> undo
> view matrix models
> #6,0.67655,-0.73609,-0.021086,518.61,-0.735,-0.67676,0.042162,1026.8,-0.045305,-0.013027,-0.99889,965.63
> view matrix models
> #6,0.67863,-0.73447,0.0027947,507.02,-0.73431,-0.6784,0.023716,1035,-0.015523,-0.018147,-0.99971,956.26
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.67863,-0.73447,0.0027947,508.2,-0.73431,-0.6784,0.023716,1038.3,-0.015523,-0.018147,-0.99971,956.19
> fitmap #6 inMap #5
Fit map cryosparc_P23_J1772_map_locres.mrc in map J1770_FE using 556136 points
correlation = 0.4654, correlation about mean = 0.004979, overlap = 5.607e+05
steps = 192, shift = 9.81, angle = 10.6 degrees
Position of cryosparc_P23_J1772_map_locres.mrc (#6) relative to J1770_FE (#5)
coordinates:
Matrix rotation and translation
0.44852051 -0.89365997 -0.01418363 570.85480520
0.89242120 0.44865831 -0.04785486 -120.70874369
0.04912958 0.00880612 0.99875358 -24.87285560
Axis 0.03168780 -0.03540807 0.99887044
Axis point 383.75107879 402.05737701 0.00000000
Rotation angle (degrees) 63.38672762
Shift along axis -2.48156606
> undo
> color sample #5.1 map #6 palette 3,#0000ff:6,#00ff00:9,#ff0000
Map values for surface "surface": minimum 0, mean 6.734, maximum 83.39
Map values for surface "cap front": minimum 3.706, mean 6.824, maximum 13.41
> ui mousemode right clip
> color sample #5.1 map #6 palette 3,#0000ff:6,#00ff00:9,#ff0000
Map values for surface "surface": minimum 0, mean 6.734, maximum 83.39
Map values for surface "cap front": minimum 4.775, mean 6.985, maximum 41.66
> volume #6 level 11.2
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.67863,-0.73447,0.0027947,509.23,-0.73431,-0.6784,0.023716,1035.7,-0.015523,-0.018147,-0.99971,956.19
> volume #6 level 7.105
> color sample #5.1 map #6 palette 3,#0000ff:6,#00ff00:9,#ff0000
Map values for surface "surface": minimum 0, mean 6.704, maximum 83.63
> ui mousemode right clip
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.7012,-0.71296,0.00026846,492.93,-0.71283,-0.70106,0.019856,1037.8,-0.013968,-0.014114,-0.9998,954.02
> color sample #5.1 map #6 palette 3,#0000ff:6,#00ff00:9,#ff0000
Map values for surface "surface": minimum 0, mean 6.687, maximum 83.62
Map values for surface "cap front": minimum 4.775, mean 5.637, maximum 9.86
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.7012,-0.71296,0.00026846,498.59,-0.71283,-0.70106,0.019856,1042.5,-0.013968,-0.014114,-0.9998,954.59
> ui mousemode right clip
> color sample #5.1 map #6 palette 3,#0000ff:6,#00ff00:9,#ff0000
Map values for surface "surface": minimum 0, mean 6.63, maximum 83.86
> color sample #5.1 map #6 palette 3,#0000ff:6,#00ff00:9,#ff0000
Map values for surface "surface": minimum 0, mean 6.63, maximum 83.86
Map values for surface "cap front": minimum 4.775, mean 6.806, maximum 13.48
> color sample #5.1 map #6 palette 4,#0000ff:6,#00ff00:9,#ff0000
Map values for surface "surface": minimum 0, mean 6.63, maximum 83.86
Map values for surface "cap front": minimum 4.775, mean 6.806, maximum 13.48
> color sample #5.1 map #6 palette 4,#0000ff:7,#00ff00:10,#ff0000
Map values for surface "surface": minimum 0, mean 6.63, maximum 83.86
Map values for surface "cap front": minimum 4.775, mean 6.806, maximum 13.48
> color sample #5.1 map #6 palette 5,#0000ff:8,#00ff00:11,#ff0000
Map values for surface "surface": minimum 0, mean 6.63, maximum 83.86
Map values for surface "cap front": minimum 4.775, mean 6.806, maximum 13.48
> ui mousemode right "rotate selected models"
> ui mousemode right clip
> fitmap #6 inMap #5
Fit map cryosparc_P23_J1772_map_locres.mrc in map J1770_FE using 556136 points
correlation = 0.4654, correlation about mean = 0.004986, overlap = 5.607e+05
steps = 232, shift = 10.9, angle = 12.3 degrees
Position of cryosparc_P23_J1772_map_locres.mrc (#6) relative to J1770_FE (#5)
coordinates:
Matrix rotation and translation
0.44843477 -0.89370215 -0.01423684 570.92176745
0.89245986 0.44857475 -0.04791714 -120.66744478
0.04920994 0.00878190 0.99874983 -24.85908666
Axis 0.03170755 -0.03548105 0.99886722
Axis point 383.73998016 402.08218830 0.00000000
Rotation angle (degrees) 63.39227213
Shift along axis -2.44698898
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.53458,-0.84491,-0.018944,623.91,-0.84368,-0.53484,0.046304,1016.7,-0.049255,-0.0087703,-0.99875,965.32
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.3124,-0.94994,0.0049256,742.68,-0.9477,-0.3113,0.070378,959.43,-0.065321,-0.026654,-0.99751,978.17
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.3124,-0.94994,0.0049256,742.74,-0.9477,-0.3113,0.070378,959.02,-0.065321,-0.026654,-0.99751,978.19
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.29215,-0.95632,0.010024,751.07,-0.95409,-0.29071,0.072135,952.67,-0.06607,-0.030638,-0.99734,979.99
> view matrix models
> #6,0.31166,-0.95014,-0.010037,749.47,-0.94798,-0.31163,0.065024,961.53,-0.06491,-0.010751,-0.99783,971.9
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.31166,-0.95014,-0.010037,750.23,-0.94798,-0.31163,0.065024,964.57,-0.06491,-0.010751,-0.99783,969.55
> color sample #5.1 map #6 palette 5,#0000ff:8,#00ff00:11,#ff0000
Map values for surface "surface": minimum 0, mean 6.704, maximum 81.87
Map values for surface "cap front": minimum 0.1064, mean 5.961, maximum 10.3
> ui mousemode right clip
> color sample #5.1 map #6 palette 5,#0000ff:8,#00ff00:11,#ff0000
Map values for surface "surface": minimum 0, mean 6.704, maximum 81.87
Map values for surface "cap front": minimum 2.423, mean 6.735, maximum 13.35
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.31249,-0.94992,-0.00018017,745.63,-0.94992,-0.31248,-0.0036285,994.83,0.0033905,0.001305,-0.99999,938.81
> view matrix models
> #6,0.31248,-0.94989,-0.0084239,749.12,-0.9499,-0.31241,-0.0092514,997.18,0.0061561,0.010893,-0.99992,933.91
> color sample #5.1 map #6 palette 5,#0000ff:8,#00ff00:11,#ff0000
Map values for surface "surface": minimum 0, mean 6.609, maximum 84.34
> ui mousemode right clip
> color sample #5.1 map #6 palette 5,#0000ff:8,#00ff00:11,#ff0000
Map values for surface "surface": minimum 0, mean 6.609, maximum 84.34
Map values for surface "cap front": minimum 4.775, mean 6.786, maximum 13.29
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.31248,-0.94989,-0.0084239,749.68,-0.9499,-0.31241,-0.0092514,996.07,0.0061561,0.010893,-0.99992,934.92
> color sample #5.1 map #6 palette 5,#0000ff:8,#00ff00:11,#ff0000
Map values for surface "surface": minimum 0, mean 6.608, maximum 84.13
Map values for surface "cap front": minimum 4.775, mean 6.786, maximum 13.43
> color sample #5.1 map #6 palette 5,#0000ff:8,#00ff00:11,#ff0000
Map values for surface "surface": minimum 0, mean 6.608, maximum 84.13
Map values for surface "cap front": minimum 4.775, mean 6.786, maximum 13.43
> color sample #5.1 map #6 palette 4,#0000ff:8,#00ff00:11,#ff0000
Map values for surface "surface": minimum 0, mean 6.608, maximum 84.13
Map values for surface "cap front": minimum 4.775, mean 6.786, maximum 13.43
> color sample #5.1 map #6 palette
> 3,#0000ff:5,#00ffff:7,#00ff00:9,#ffff00:11,#ff0000
Map values for surface "surface": minimum 0, mean 6.608, maximum 84.13
Map values for surface "cap front": minimum 4.775, mean 6.786, maximum 13.43
> color sample #5.1 map #6 palette
> 4,#0000ff:6,#00ffff:8,#00ff00:10,#ffff00:12,#ff0000
Map values for surface "surface": minimum 0, mean 6.608, maximum 84.13
Map values for surface "cap front": minimum 4.775, mean 6.786, maximum 13.43
> view slice
> view matrix models
> #6,0.31248,-0.94989,-0.0084239,749.68,-0.9499,-0.31241,-0.0092514,995.13,0.0061561,0.010893,-0.99992,938.88
> color sample #5.1 map #6 palette
> 4,#0000ff:6,#00ffff:8,#00ff00:10,#ffff00:12,#ff0000
Map values for surface "surface": minimum 0, mean 6.65, maximum 83.6
Map values for surface "cap front": minimum 4.775, mean 6.723, maximum 12.76
> view slice
> key rainbow :4 :6 :8 :10 :12 showTool true
> ui mousemode right "color key"
> ui mousemode right "translate selected models"
> undo
> view slice
> undo
> view slice
> color sample #5.1 map #6 palette
> 5,#0000ff:6,#00ffff:8,#00ff00:10,#ffff00:12,#ff0000
Map values for surface "surface": minimum 0, mean 6.65, maximum 83.6
Map values for surface "cap front": minimum 4.775, mean 6.723, maximum 12.76
> color sample #5.1 map #6 palette
> 4,#0000ff:5,#00ffff:8,#00ff00:10,#ffff00:12,#ff0000
Map values for surface "surface": minimum 0, mean 6.65, maximum 83.6
Map values for surface "cap front": minimum 4.775, mean 6.723, maximum 12.76
> color sample #5.1 map #6 palette
> 4,#0000ff:5,#00ffff:8,#00ff00:10,#ffff00:12,#ff0000
Map values for surface "surface": minimum 0, mean 6.65, maximum 83.6
Map values for surface "cap front": minimum 4.775, mean 6.723, maximum 12.76
> color sample #5.1 map #6 palette
> 5,#0000ff:7,#00ffff:9,#00ff00:11,#ffff00:13,#ff0000
Map values for surface "surface": minimum 0, mean 6.65, maximum 83.6
Map values for surface "cap front": minimum 4.775, mean 6.723, maximum 12.76
> color sample #5.1 map #6 palette
> 4,#0000ff:6,#00ffff:8,#00ff00:10,#ffff00:12,#ff0000
Map values for surface "surface": minimum 0, mean 6.65, maximum 83.6
Map values for surface "cap front": minimum 4.775, mean 6.723, maximum 12.76
> save /Users/ConstantinePetridis/Desktop/localres.png width 3000 height 2655
> supersample 4
> view slice
> ui mousemode right rotate
> save /Users/ConstantinePetridis/Desktop/localres.png width 3000 height 2655
> supersample 4
> close #7
> close #6
> color #5 #8c8dfcff
> open /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1772_map_locres.mrc
Opened cryosparc_P23_J1772_map_locres.mrc as #6, grid size 360,360,360, pixel
2.19, shown at level 15.3, step 2, values float32
> volume #6 level 4.338
> view slice
> select add #6
3 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.73792,-0.65748,-0.15229,426.93,-0.65684,-0.7515,0.06169,922.6,-0.15501,0.054508,-0.98641,883.06
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.73792,-0.65748,-0.15229,481.25,-0.65684,-0.7515,0.06169,1044.3,-0.15501,0.054508,-0.98641,976.95
> view matrix models
> #6,0.73792,-0.65748,-0.15229,521.56,-0.65684,-0.7515,0.06169,1039.7,-0.15501,0.054508,-0.98641,983.22
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.77527,-0.63157,0.0082957,428.45,-0.63144,-0.77464,0.034901,1050.2,-0.015616,-0.032296,-0.99936,968
> view matrix models
> #6,0.57957,-0.8149,0.005019,579.17,-0.81492,-0.57955,0.0047301,1058.4,-0.0009458,-0.0068316,-0.99998,952.45
> view matrix models
> #6,0.56528,-0.82392,0.040091,573.46,-0.82321,-0.56657,-0.036471,1074,0.052763,-0.012386,-0.99853,932.87
> view matrix models
> #6,0.59292,-0.80379,0.048658,551,-0.80287,-0.59474,-0.041117,1079.1,0.061988,-0.014687,-0.99797,929.9
> view matrix models
> #6,0.64649,-0.7621,0.035332,519.13,-0.75938,-0.64726,-0.066303,1093.4,0.073399,0.016034,-0.99717,912.96
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.64649,-0.7621,0.035332,530.48,-0.75938,-0.64726,-0.066303,1094.8,0.073399,0.016034,-0.99717,896.38
> ui mousemode right clip
> volume #6 level 8.563
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.64649,-0.7621,0.035332,526.11,-0.75938,-0.64726,-0.066303,1077.4,0.073399,0.016034,-0.99717,897.09
> view matrix models
> #6,0.64649,-0.7621,0.035332,519.94,-0.75938,-0.64726,-0.066303,1083,0.073399,0.016034,-0.99717,897.33
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.64806,-0.75633,-0.089372,570,-0.75997,-0.64987,-0.011,1060.8,-0.049761,0.075049,-0.99594,922.08
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.64806,-0.75633,-0.089372,576.4,-0.75997,-0.64987,-0.011,1054.9,-0.049761,0.075049,-0.99594,921.37
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.6425,-0.75609,-0.12456,593.44,-0.75795,-0.65097,0.041827,1032.1,-0.11271,0.067537,-0.99133,947.17
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.6425,-0.75609,-0.12456,593.72,-0.75795,-0.65097,0.041827,1031.3,-0.11271,0.067537,-0.99133,947.14
> volume #6 level 6.847
> view matrix models
> #6,0.6425,-0.75609,-0.12456,592.38,-0.75795,-0.65097,0.041827,1030.9,-0.11271,0.067537,-0.99133,947.42
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.64591,-0.75866,-0.085075,575.28,-0.75837,-0.65043,0.042488,1030.5,-0.087569,0.037075,-0.99547,951.28
> view matrix models
> #6,0.72579,-0.68433,-0.070145,508.19,-0.68645,-0.72712,-0.0089347,1054.3,-0.04489,0.054635,-0.9975,928.4
> view matrix models
> #6,0.72509,-0.685,-0.070781,509,-0.686,-0.72748,0.012928,1044.9,-0.060348,0.039182,-0.99741,940.54
> view matrix models
> #6,0.66079,-0.74786,-0.063795,556.13,-0.74283,-0.66378,0.087132,1010.7,-0.10751,-0.010187,-0.99415,977.19
> volume #6 level 8.827
> transparency #6
Missing or invalid "percent" argument: Expected a number
> transparency #6 50
> volume #6 level 8.167
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.66079,-0.74786,-0.063795,560.77,-0.74283,-0.66378,0.087132,1001.6,-0.10751,-0.010187,-0.99415,976.52
> view matrix models
> #6,0.66079,-0.74786,-0.063795,568.86,-0.74283,-0.66378,0.087132,1002.1,-0.10751,-0.010187,-0.99415,976.76
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.60104,-0.76193,-0.24127,673.3,-0.7084,-0.64766,0.28054,900.01,-0.37001,0.0022994,-0.92902,1047.6
> view matrix models
> #6,0.6286,-0.74356,-0.22801,649.58,-0.74019,-0.66195,0.11807,987.15,-0.23872,0.094554,-0.96647,975.44
> view matrix models
> #6,0.65931,-0.74084,-0.12833,594.08,-0.74854,-0.66281,-0.019335,1049.1,-0.070734,0.10881,-0.99154,914.29
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.65931,-0.74084,-0.12833,584.52,-0.74854,-0.66281,-0.019335,1056.8,-0.070734,0.10881,-0.99154,917.83
> view matrix models
> #6,0.65931,-0.74084,-0.12833,584.07,-0.74854,-0.66281,-0.019335,1055.8,-0.070734,0.10881,-0.99154,917.84
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.65065,-0.75059,-0.1152,585.75,-0.75,-0.65894,0.05741,1022.3,-0.119,0.049046,-0.99168,960.46
> view matrix models
> #6,0.66794,-0.73266,-0.1306,578.41,-0.73646,-0.67599,0.025754,1037.1,-0.10715,0.078978,-0.9911,943.76
> view matrix models
> #6,0.67045,-0.73938,-0.061804,550.86,-0.74121,-0.67117,-0.011271,1052.8,-0.033148,0.053367,-0.99802,927.63
> view matrix models
> #6,0.67828,-0.73209,-0.063063,545.43,-0.73394,-0.67915,-0.0098613,1052.5,-0.035609,0.052973,-0.99796,928.73
> view matrix models
> #6,0.66893,-0.74053,-0.064409,553.01,-0.74248,-0.66978,-0.010479,1052.4,-0.03538,0.054832,-0.99787,927.87
> volume #6 level 7.507
> ui mousemode right clip
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.66911,-0.74205,-0.04069,543.47,-0.74285,-0.66942,-0.0076748,1051.2,-0.021544,0.035362,-0.99914,930.63
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.66911,-0.74205,-0.04069,536.2,-0.74285,-0.66942,-0.0076748,1050.5,-0.021544,0.035362,-0.99914,931.48
> view matrix models
> #6,0.66911,-0.74205,-0.04069,533.53,-0.74285,-0.66942,-0.0076748,1051.2,-0.021544,0.035362,-0.99914,931.93
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.66873,-0.74274,-0.03382,531.04,-0.74335,-0.66884,-0.0094975,1051.9,-0.015566,0.031491,-0.99938,931.21
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.66873,-0.74274,-0.03382,532.76,-0.74335,-0.66884,-0.0094975,1051.4,-0.015566,0.031491,-0.99938,931.66
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.66744,-0.74437,-0.020672,528.32,-0.74465,-0.66731,-0.013922,1053.2,-0.0034315,0.024686,-0.99969,929.69
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.66744,-0.74437,-0.020672,534.92,-0.74465,-0.66731,-0.013922,1054.9,-0.0034315,0.024686,-0.99969,929.71
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.66683,-0.74518,0.0062522,524.05,-0.74518,-0.66686,-0.0035196,1050.6,0.006792,-0.002312,-0.99997,936.44
> ui tool show "Surface Color"
> color sample #5.1 map #6 palette #0000ff:#00ffff:#00ff00:#ffff00:#ff0000
Map values for surface "surface": minimum 0, mean 6.678, maximum 84.54
> hide #!6 models
> select subtract #6
Nothing selected
> view slice
> color sample #5.1 map #6 palette
> 4,#0000ff:6,#00ffff:8,#00ff00:10,#ffff00:12,#ff0000
Map values for surface "surface": minimum 0, mean 6.678, maximum 84.54
Map values for surface "cap front": minimum 4.775, mean 6.72, maximum 12.62
> view slice
> ui mousemode right rotate
> save /Users/ConstantinePetridis/Desktop/localres.png width 3000 height 2655
> supersample 4
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1586_003_volume_map.mrc
Opened cryosparc_P23_J1586_003_volume_map.mrc as #7, grid size 256,256,256,
pixel 3.33, shown at level 0.585, step 1, values float32
> hide #!5 models
> volume #7 level 0.7706
> ui mousemode right clip
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1577_001_volume_map.mrc
Opened cryosparc_P23_J1577_001_volume_map.mrc as #8, grid size 636,636,636,
pixel 1.34, shown at level 0.041, step 4, values float32
> volume #8 level 0.072
> volume #8 step 1
> volume #8 step 2
> volume #8 step 4
> volume #8 level 0.06093
> ui mousemode right rotate
> close #7-8
> show #!3 models
> show #!2 models
> view front
> color #3 #8c8dfcff models
> color #3 #8c8dfc80 models
> hide #!3 models
> show #!3 models
> hide #!2 models
> show #!2 models
> volume #2 level 0.3359
> volume #3 level 0.2475
> volume #2 level 0.1906
> volume #2 level 0.1716
> volume #2 level 0.336
> volume #3 level 0.212
> volume #2 level 0.3002
> ui tool show "Hide Dust"
> surface dust #2 size 1.41
> surface dust #3 size 14.2
> surface dust #3 size 14.43
> surface dust #3 size 65.43
> hide #!2 models
> surface dust #3 size 68.1
> surface dust #3 size 8.53
> ui mousemode right clip
> surface dust #3 size 8.64
> surface dust #3 size 2.37
> surface dust #3 size 6
> surface dust #3 size 63
> surface dust #3 size 6
> surface dust #3 size 60
> show #!2 models
> view front
> volume #3 color #8687ee
> volume #3 color #8c8dfc
> volume #3 color #7a81ff
> volume #3 color #8687ee
> volume #3 color #8c8dfc
> volume #3 color #8c8dfc80
> volume #3 color #8c8dfc8c
> volume #2 level 0.2462
> volume #2 level 0.24
> volume #2 level 0.26
> volume #2 level 0.2125
> volume #2 level 0.2773
> volume #2 level 0.2902
> volume #3 level 0.21
> volume #3 level 0.208
> surface dust #2 size 3.56
> surface dust #2 size 3.42
> surface dust #2 size 8.43
> surface dust #3 size 6
> surface dust #3 size 62
> surface dust #3 size 6
> surface dust #3 size 64
> surface dust #3 size 6
> surface dust #3 size 62
> surface dust #3 size 67.21
> surface dust #3 size 57.94
> surface dust #3 size 6
> surface dust #3 size 60
> view front
> volume #3 level 0.212
> volume #3 level 0.21
> volume #3 level 0.209
> volume #3 level 0.211
> view front
> save /Users/ConstantinePetridis/Desktop/BV_FE_front.png width 3000 height
> 1974 supersample 4
> view side
Expected an objects specifier or a view name or a keyword
> view diagonal
> save /Users/ConstantinePetridis/Desktop/BV_FE_diag.png width 3000 height
> 1974 supersample 4
> view top
> save /Users/ConstantinePetridis/Desktop/BV_FE_top.png width 3000 height 1974
> supersample 4
> view slice
> save /Users/ConstantinePetridis/Desktop/BV_FE_slice.png width 3000 height
> 1974 supersample 4
> view front
> volume #3 color #8c8dfc80
> view slice
> ui tool show "Side View"
> view name slice
> undo
> view name slice
> ui mousemode right rotate
> ui mousemode right clip
> view name slice
> view matrix
view matrix camera
-0.94831,0.019789,-0.31672,-111.3,-0.31734,-0.059575,0.94644,2298.4,-0.00014037,0.99803,0.062776,594.4
view matrix models
#1,0.22884,0.97346,2.2675e-07,6.5664,-0.97346,0.22884,5.8736e-07,795.07,5.199e-07,-3.5514e-07,1,179.58,#1.1,1,0,0,0,0,1,0,0,0,0,1,0,#2,1,0.00083921,3.6674e-07,-0.41412,-0.00083921,1,1.9537e-07,0.41458,-3.6657e-07,-1.9568e-07,1,-0.16369,#2.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.2,1,0,0,0,0,1,0,0,0,0,1,0,#2.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#3,1,-0.00067234,5.3385e-06,67.653,0.00067234,1,2.164e-05,67.085,-5.353e-06,-2.1636e-05,1,119.77,#3.1,1,0,0,0,0,1,0,0,0,0,1,0,#3.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#4,-0.077036,0.99703,2.7381e-05,101.45,-0.99703,-0.077036,3.09e-05,951.16,3.2916e-05,-2.4918e-05,1,58.136,#4.1,1,0,0,0,0,1,0,0,0,0,1,0,#5,0.99509,0.098993,-3.3983e-05,62.481,0.098993,-0.99509,3.2042e-05,846.52,-3.0643e-05,-3.5249e-05,-1,939.76,#5.1,1,0,0,0,0,1,0,0,0,0,1,0,#6,0.66683,-0.74518,0.0062522,524.05,-0.74518,-0.66686,-0.0035196,1050.6,0.006792,-0.002312,-0.99997,936.44,#6.1,1,0,0,0,0,1,0,0,0,0,1,0
> save /Users/ConstantinePetridis/Desktop/BV_FE_slice.png width 3000 height
> 1974 supersample 4
> volume #2 color #d2d2d3f4
> volume #2 color #d2d2d3
> volume #2 color #d2d2d3f3
> volume #2 color #d2d2d3
> save /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs includeMaps true
> open 8I8B
8i8b title:
Outer shell and inner layer structures of Autographa californica multiple
nucleopolyhedrovirus (AcMNPV) [more info...]
Chain information for 8i8b #7
---
Chain | Description | UniProt
A B C | Viral capsid associated protein | A0A0N7CTI8_9ABAC 1-691
D | AcOrf-109 peptide | A0A0N7CRZ7_9ABAC 1-390
E | Early 49 Daa protein | A0A0N7CTL8_9ABAC 1-477
F G | P40 | A0A0N7CQX9_9ABAC 1-361
H I | Occlusion-derived virus envelope/capsid protein | A0A0N7CT36_9ABAC 1-290
J | 38K | A0A0N7CSX4_9ABAC 1-320
W X Y Z | Major viral capsid protein | A0A0N6WHR0_9ABAC 1-347
> select add #7
30015 atoms, 30679 bonds, 10 pseudobonds, 3660 residues, 2 models selected
> show sel cartoons
> hide sel surfaces
> hide sel atoms
> select subtract #7
Nothing selected
> sequence chain #7/A#7/B#7/C
Alignment identifier is 1
> hide cartoons
> show surfaces
> hide surfaces
> show #7/A-C
> show #7/A-C cartoons
> hide surfaces
> hide #7/A-C surfaces
> hide atoms
> select add #7
30015 atoms, 30679 bonds, 10 pseudobonds, 3660 residues, 2 models selected
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> view matrix models
> #7,-0.55519,-0.77651,0.29799,690.82,0.76662,-0.3388,0.54544,-241.77,-0.32258,0.53127,0.78339,103.57
> ui mousemode right "translate selected models"
> view matrix models
> #7,-0.55519,-0.77651,0.29799,664.48,0.76662,-0.3388,0.54544,-203.22,-0.32258,0.53127,0.78339,294.77
> ui mousemode right "rotate selected models"
> view matrix models
> #7,0.90677,0.38864,0.16346,-123.03,-0.24069,0.79549,-0.55612,374.79,-0.34616,0.46493,0.81487,306.61
> view matrix models
> #7,0.5346,0.83963,0.096021,-35.653,-0.77475,0.53231,-0.34119,571.6,-0.33759,0.10801,0.93508,331.78
> view matrix models
> #7,0.57975,0.79531,0.17713,-74.058,-0.81452,0.56002,0.15147,408.62,0.021266,-0.23209,0.97246,238.4
> ui mousemode right "translate selected models"
> view matrix models
> #7,0.57975,0.79531,0.17713,-33.385,-0.81452,0.56002,0.15147,460.61,0.021266,-0.23209,0.97246,248.01
> view matrix models
> #7,0.57975,0.79531,0.17713,-53.863,-0.81452,0.56002,0.15147,465.73,0.021266,-0.23209,0.97246,233.23
> hide #!2 models
> view matrix models
> #7,0.57975,0.79531,0.17713,-34.001,-0.81452,0.56002,0.15147,475.16,0.021266,-0.23209,0.97246,227.42
> view matrix models
> #7,0.57975,0.79531,0.17713,-42.007,-0.81452,0.56002,0.15147,472.25,0.021266,-0.23209,0.97246,239.31
> ui mousemode right "rotate selected models"
> view matrix models
> #7,0.57983,0.78956,-0.20099,92.537,-0.7095,0.6106,0.35181,348.17,0.4005,-0.061389,0.91424,69.47
> view matrix models
> #7,0.91297,0.39972,-0.081914,-9.1552,-0.35383,0.87556,0.32894,156.79,0.2032,-0.27133,0.94079,183.29
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #7,0.91297,0.39972,-0.081914,-18.147,-0.35383,0.87556,0.32894,159.95,0.2032,-0.27133,0.94079,183.5
> ui tool show "Fit in Map"
> fitmap #7 inMap #3
Fit molecule 8i8b (#7) to map J1663_FE (#3) using 30015 atoms
average map value = 0.2814, steps = 96
shifted from previous position = 10.8
rotated from previous position = 16.1 degrees
atoms outside contour = 8860, contour level = 0.211
Position of 8i8b (#7) relative to J1663_FE (#3) coordinates:
Matrix rotation and translation
0.90246535 0.42993054 0.02675881 -121.96814063
-0.43063237 0.89892384 0.08057105 209.56352313
0.01058582 -0.08423580 0.99638962 74.38816054
Axis -0.18806028 0.01845492 -0.98198409
Axis point 396.19186388 393.80100387 0.00000000
Rotation angle (degrees) 25.98753426
Shift along axis -46.24314981
> select clear
> hide #!3 models
> select #7/A-C/485
5049 atoms, 5151 bonds, 2 pseudobonds, 605 residues, 2 models selected
> select #7/A-C:485
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #7/A-C:480
9 atoms, 8 bonds, 1 residue, 1 model selected
> rainbow sel
> select add #7
30015 atoms, 30679 bonds, 10 pseudobonds, 3660 residues, 3 models selected
> rainbow sel
> select clear
> show #!5 models
> color #5 #8c8dfc70 models
> color #5 #8c8dfc7e models
> color #5 #8c8dfc46 models
> color #5 #8c8dfc58 models
> show #!2 models
> hide #!2 models
> open
> /Users/ConstantinePetridis/Downloads/fold_2025_01_03_16_08_vp80x1/fold_2025_01_03_16_08_vp80x1_model_0.cif
Chain information for fold_2025_01_03_16_08_vp80x1_model_0.cif #8
---
Chain | Description
A | .
> hide #8 models
> show #8 models
> hide #8 models
> show #8 models
> hide #8 models
> show #8 models
> hide #!7 models
> hide #!5 models
> show #!5 models
> show #!7 models
> select add #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> ui mousemode right "move picked models"
> ui mousemode right "translate selected models"
> view matrix models #8,1,0,0,414.74,0,1,0,29.281,0,0,1,615.06
> view matrix models #8,1,0,0,376.64,0,1,0,25.149,0,0,1,578.93
> open
> /Users/ConstantinePetridis/Downloads/fold_2025_01_03_16_08_vp80x1/fold_2025_01_03_16_08_vp80x1_model_1.cif
Chain information for fold_2025_01_03_16_08_vp80x1_model_1.cif #9
---
Chain | Description
A | .
> select add #9
11218 atoms, 11396 bonds, 1382 residues, 2 models selected
> select subtract #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> view matrix models #9,1,0,0,127.72,0,1,0,53.916,0,0,1,531.41
> view matrix models #9,1,0,0,243.93,0,1,0,-8.1051,0,0,1,567.78
> hide #9 models
> select subtract #9
Nothing selected
> select add #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> view matrix models #8,1,0,0,584.9,0,1,0,192.74,0,0,1,569.87
> view matrix models #8,1,0,0,568.66,0,1,0,323.29,0,0,1,503.74
> view matrix models #8,1,0,0,437.31,0,1,0,247.49,0,0,1,572.67
> view matrix models #8,1,0,0,460.65,0,1,0,249.63,0,0,1,580.54
> ui tool show Matchmaker
> matchmaker #8/A to #7/C pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8i8b, chain C (#7) with fold_2025_01_03_16_08_vp80x1_model_0.cif,
chain A (#8), sequence alignment score = 2774.4
RMSD between 179 pruned atom pairs is 0.767 angstroms; (across all 229 pairs:
13.472)
> hide #8 models
> volume #3 level 0.1697
> volume #3 level 0.211
> show #8 models
> matchmaker #8 to #7/A pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8i8b, chain A (#7) with fold_2025_01_03_16_08_vp80x1_model_0.cif,
chain A (#8), sequence alignment score = 2745
RMSD between 126 pruned atom pairs is 0.835 angstroms; (across all 188 pairs:
8.377)
> matchmaker #8 to #7/C pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8i8b, chain C (#7) with fold_2025_01_03_16_08_vp80x1_model_0.cif,
chain A (#8), sequence alignment score = 2774.4
RMSD between 179 pruned atom pairs is 0.767 angstroms; (across all 229 pairs:
13.472)
> matchmaker #9 to #7/C pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8i8b, chain C (#7) with fold_2025_01_03_16_08_vp80x1_model_1.cif,
chain A (#9), sequence alignment score = 2787
RMSD between 180 pruned atom pairs is 0.786 angstroms; (across all 229 pairs:
11.833)
> show #9 models
> hide #8 models
> select subtract #8
Nothing selected
> open
> /Users/ConstantinePetridis/Downloads/fold_2025_01_03_16_08_vp80x1/fold_2025_01_03_16_08_vp80x1_model_2.cif
Chain information for fold_2025_01_03_16_08_vp80x1_model_2.cif #10
---
Chain | Description
A | .
> open
> /Users/ConstantinePetridis/Downloads/fold_2025_01_03_16_08_vp80x1/fold_2025_01_03_16_08_vp80x1_model_3.cif
Chain information for fold_2025_01_03_16_08_vp80x1_model_3.cif #11
---
Chain | Description
A | .
> open
> /Users/ConstantinePetridis/Downloads/fold_2025_01_03_16_08_vp80x1/fold_2025_01_03_16_08_vp80x1_model_4.cif
Chain information for fold_2025_01_03_16_08_vp80x1_model_4.cif #12
---
Chain | Description
A | .
> ui tool show Matchmaker
> matchmaker #8-12 to #7/C pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8i8b, chain C (#7) with fold_2025_01_03_16_08_vp80x1_model_0.cif,
chain A (#8), sequence alignment score = 2774.4
RMSD between 179 pruned atom pairs is 0.767 angstroms; (across all 229 pairs:
13.472)
Matchmaker 8i8b, chain C (#7) with fold_2025_01_03_16_08_vp80x1_model_1.cif,
chain A (#9), sequence alignment score = 2787
RMSD between 180 pruned atom pairs is 0.786 angstroms; (across all 229 pairs:
11.833)
Matchmaker 8i8b, chain C (#7) with fold_2025_01_03_16_08_vp80x1_model_2.cif,
chain A (#10), sequence alignment score = 2775
RMSD between 178 pruned atom pairs is 0.812 angstroms; (across all 229 pairs:
3.873)
Matchmaker 8i8b, chain C (#7) with fold_2025_01_03_16_08_vp80x1_model_3.cif,
chain A (#11), sequence alignment score = 2781
RMSD between 181 pruned atom pairs is 0.820 angstroms; (across all 229 pairs:
12.164)
Matchmaker 8i8b, chain C (#7) with fold_2025_01_03_16_08_vp80x1_model_4.cif,
chain A (#12), sequence alignment score = 2775
RMSD between 179 pruned atom pairs is 0.784 angstroms; (across all 229 pairs:
5.761)
> hide #9 models
> hide #10 models
> hide #11 models
> hide #12 models
> show #11 models
> show #10 models
> hide #11 models
> show #9 models
> hide #9 models
> show #8 models
> hide #10 models
> close #9-12
> select add #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> view matrix models
> #8,-0.33087,0.92677,0.17782,239.4,0.17859,-0.12354,0.97614,420.91,0.92662,0.35474,-0.12464,625.24
> ui mousemode right "rotate selected models"
> view matrix models
> #8,0.96976,0.18739,-0.15635,229.57,-0.1066,0.90154,0.41935,414.16,0.21953,-0.39001,0.89426,642.41
> ui mousemode right "translate selected models"
> view matrix models
> #8,0.96976,0.18739,-0.15635,320.18,-0.1066,0.90154,0.41935,268.06,0.21953,-0.39001,0.89426,613.06
> view matrix models
> #8,0.96976,0.18739,-0.15635,366.43,-0.1066,0.90154,0.41935,253.63,0.21953,-0.39001,0.89426,618.23
> ui mousemode right "rotate selected models"
> view matrix models
> #8,0.23162,-0.971,0.059244,378.67,0.93761,0.23906,0.25248,246.88,-0.25932,-0.0029305,0.96579,620.94
> ui mousemode right "move picked models"
> ui mousemode right "translate selected models"
> view matrix models
> #8,0.23162,-0.971,0.059244,390.01,0.93761,0.23906,0.25248,355.44,-0.25932,-0.0029305,0.96579,590.38
> view matrix models
> #8,0.23162,-0.971,0.059244,431.94,0.93761,0.23906,0.25248,332.25,-0.25932,-0.0029305,0.96579,584.9
> view matrix models
> #8,0.23162,-0.971,0.059244,425.8,0.93761,0.23906,0.25248,336.21,-0.25932,-0.0029305,0.96579,585.13
> ui mousemode right "rotate selected models"
> view matrix models
> #8,-0.3126,-0.94721,-0.071286,428.77,0.93721,-0.31977,0.13921,337.52,-0.15465,-0.023295,0.98769,584.59
> view matrix models
> #8,-0.27615,-0.92399,-0.26454,426.74,0.90243,-0.34398,0.25941,338.91,-0.33069,-0.16709,0.92883,586.03
> view matrix models
> #8,0.24386,-0.89807,-0.36607,421.77,0.92524,0.10232,0.36533,337.82,-0.29064,-0.42779,0.85588,586.16
> view matrix models
> #8,0.3086,-0.94876,-0.067985,424.03,0.90394,0.27027,0.33144,337.01,-0.29609,-0.16374,0.94102,585.85
> ui mousemode right "translate selected models"
> view matrix models
> #8,0.3086,-0.94876,-0.067985,424.13,0.90394,0.27027,0.33144,335.13,-0.29609,-0.16374,0.94102,591.48
> view matrix models
> #8,0.3086,-0.94876,-0.067985,422.75,0.90394,0.27027,0.33144,337.64,-0.29609,-0.16374,0.94102,594.67
> fitmap #8 inMap #3
Fit molecule fold_2025_01_03_16_08_vp80x1_model_0.cif (#8) to map J1663_FE
(#3) using 5609 atoms
average map value = 0.2021, steps = 276
shifted from previous position = 37.8
rotated from previous position = 62.6 degrees
atoms outside contour = 2697, contour level = 0.211
Position of fold_2025_01_03_16_08_vp80x1_model_0.cif (#8) relative to J1663_FE
(#3) coordinates:
Matrix rotation and translation
0.07597177 -0.98817675 -0.13317281 374.71403761
0.19670877 -0.11608066 0.97356609 277.83676812
-0.97751417 -0.10015980 0.18556418 443.06936938
Axis -0.59379417 0.46693945 0.65526790
Axis point 298.40216197 218.87930806 0.00000000
Rotation angle (degrees) 115.29458126
Shift along axis 197.55907340
> select subtract #8
Nothing selected
> hide #!3 models
> show #!3 models
> hide #!3 models
> hide #8 models
> ui mousemode right clip
> show #!2 models
> volume #5 level 0.21
> hide #!5 models
> show #!5 models
> color #5 #00000058 models
> undo
> color #5 #a3a7ff58 models
> color #5 #8c8dfcff models
> color #5 #c1153cff models
> volume #5 level 0.1967
> volume #5 level 0.1901
> volume #5 level 0.1818
> volume #2 level 0.2924
> volume #5 level 0.1801
> volume #5 color #8c8dfc80
> show #8 models
> hide #!5 models
> hide #8/A:470-691
> hide #8/A:470-691 cartoons
> select add #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> select clear
> ui mousemode right "translate selected models"
> select add #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> ui mousemode right "rotate selected models"
> view matrix models
> #8,-0.784,-0.58956,0.19434,449.97,0.5852,-0.80637,-0.085449,335.96,0.20709,0.046738,0.9772,559.89
> view matrix models
> #8,-0.7894,0.25957,-0.5563,440.13,-0.31772,-0.94815,0.0084374,344.28,-0.52526,0.1834,0.83094,563.71
> view matrix models
> #8,-0.89125,-0.39728,0.21872,450.22,0.45335,-0.79308,0.40682,341.13,0.011841,0.46174,0.88694,558.93
> ui mousemode right "translate selected models"
> view matrix models
> #8,-0.89125,-0.39728,0.21872,457.51,0.45335,-0.79308,0.40682,329.37,0.011841,0.46174,0.88694,551.89
> view matrix models
> #8,-0.89125,-0.39728,0.21872,455.73,0.45335,-0.79308,0.40682,324,0.011841,0.46174,0.88694,552.62
> ui mousemode right "rotate selected models"
> view matrix models
> #8,-0.87984,-0.43916,0.1817,455.5,0.47518,-0.80567,0.3537,323.43,-0.0089451,0.39754,0.91754,553.31
> ui mousemode right "translate selected models"
> view matrix models
> #8,-0.87984,-0.43916,0.1817,453.6,0.47518,-0.80567,0.3537,325.37,-0.0089451,0.39754,0.91754,554.25
> show #!5 models
> ui mousemode right "rotate selected models"
> view matrix models
> #8,-0.45511,-0.88406,0.10639,451.5,0.83548,-0.38264,0.3944,321.22,-0.30797,0.26838,0.91276,557.03
> open 8I8B
8i8b title:
Outer shell and inner layer structures of Autographa californica multiple
nucleopolyhedrovirus (AcMNPV) [more info...]
Chain information for 8i8b #9
---
Chain | Description | UniProt
A B C | Viral capsid associated protein | A0A0N7CTI8_9ABAC 1-691
D | AcOrf-109 peptide | A0A0N7CRZ7_9ABAC 1-390
E | Early 49 Daa protein | A0A0N7CTL8_9ABAC 1-477
F G | P40 | A0A0N7CQX9_9ABAC 1-361
H I | Occlusion-derived virus envelope/capsid protein | A0A0N7CT36_9ABAC 1-290
J | 38K | A0A0N7CSX4_9ABAC 1-320
W X Y Z | Major viral capsid protein | A0A0N6WHR0_9ABAC 1-347
> ui tool show Matchmaker
> matchmaker #9/A#9/B#9/C to #7/A#7/B#7/C pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8i8b, chain A (#7) with 8i8b, chain A (#9), sequence alignment
score = 2761.8
Matchmaker 8i8b, chain B (#7) with 8i8b, chain B (#9), sequence alignment
score = 2761.8
Matchmaker 8i8b, chain C (#7) with 8i8b, chain C (#9), sequence alignment
score = 2822.4
RMSD between 605 pruned atom pairs is 0.000 angstroms; (across all 605 pairs:
0.000)
> hide sel atoms
> select add #9
35624 atoms, 36377 bonds, 10 pseudobonds, 4351 residues, 3 models selected
> hide sel atoms
> show sel cartoons
> color #9 #0d1c2cff
> select subtract #9
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> select subtract #8
Nothing selected
> select add #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> select subtract #8
Nothing selected
> hide #8 models
> ui mousemode right clip
> show #!2 models
> hide #!2 models
> color #9 #0d1c2cff
> color #9 #d2d2d3ff
> show #8 models
> select add #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models
> #8,-0.45511,-0.88406,0.10639,491.36,0.83548,-0.38264,0.3944,332.76,-0.30797,0.26838,0.91276,581.52
> open 8VWI
Summary of feedback from opening 8VWI fetched from pdb
---
warnings | Atom H1 is not in the residue template for MET /N:1
Atom H1 is not in the residue template for MET /i:1
note | Fetching compressed mmCIF 8vwi from http://files.rcsb.org/download/8vwi.cif
8vwi title:
The base complex of the AcMNPV baculovirus nucleocapsid (Class 1, localised
reconstruction) [more info...]
Chain information for 8vwi #10
---
Chain | Description | UniProt
A B C D E F V W X Y Z a | Major capsid protein | MCP_NPVAC 1-347
G H I b c d | Capsid-associated protein VP80 | VP80_NPVAC 1-691
J M Q S e h | Occlusion-derived virus envelope protein E27 | E27_NPVAC 1-290
K L R T f g | Protein C42 | C42_NPVAC 1-361
N i | Protein AC109 | AC109_NPVAC 1-390
O j | Protein AC142 | AC142_NPVAC 1-477
P k | 38K (AC98) protein in P143-LEF5 intergenic region | 38K_NPVAC 1-320
Non-standard residues in 8vwi #10
---
ZN — zinc ion
> select add #10
161875 atoms, 163633 bonds, 77 pseudobonds, 10305 residues, 4 models selected
> select subtract #8
156266 atoms, 157935 bonds, 77 pseudobonds, 9614 residues, 3 models selected
> show sel cartoons
> hide sel atoms
> select clear
> select #10/b:472-668
3289 atoms, 3323 bonds, 197 residues, 1 model selected
> select #10/c:477-682
3452 atoms, 3488 bonds, 206 residues, 1 model selected
> select #10/d:460-688
3743 atoms, 3780 bonds, 1 pseudobond, 223 residues, 2 models selected
> select #10/I:460-688
3740 atoms, 3777 bonds, 1 pseudobond, 224 residues, 2 models selected
> select #10/H:473-682
3513 atoms, 3549 bonds, 210 residues, 1 model selected
> select #10/G:475-668
3228 atoms, 3263 bonds, 194 residues, 1 model selected
> matchmaker #10/G#10/H#10/I to #7/A#7/B#7/C pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8i8b, chain A (#7) with 8vwi, chain G (#10), sequence alignment
score = 2652.6
Matchmaker 8i8b, chain B (#7) with 8vwi, chain H (#10), sequence alignment
score = 2649.6
Matchmaker 8i8b, chain C (#7) with 8vwi, chain I (#10), sequence alignment
score = 2731.8
RMSD between 311 pruned atom pairs is 1.250 angstroms; (across all 581 pairs:
4.160)
> select clear
> hide #!9 models
> hide #!7 models
> color #10 #d2d2d3ff
> hide #8 models
> rainbow #!10
> color #10 #dfd9fcff
> show #8 models
> select add #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> view matrix models
> #8,-0.45511,-0.88406,0.10639,543.02,0.83548,-0.38264,0.3944,283.99,-0.30797,0.26838,0.91276,617.35
> view matrix models
> #8,-0.45511,-0.88406,0.10639,444.98,0.83548,-0.38264,0.3944,459.45,-0.30797,0.26838,0.91276,600.64
> view matrix models
> #8,-0.45511,-0.88406,0.10639,331.15,0.83548,-0.38264,0.3944,410.32,-0.30797,0.26838,0.91276,602.64
> ui mousemode right clip
> ui mousemode right "translate selected models"
> view matrix models
> #8,-0.45511,-0.88406,0.10639,354.2,0.83548,-0.38264,0.3944,388.46,-0.30797,0.26838,0.91276,579.93
> ui mousemode right "rotate selected models"
> view matrix models
> #8,-0.33008,-0.94352,-0.02851,352.33,0.70873,-0.26766,0.65273,391.17,-0.62349,0.19525,0.75706,581.32
> view matrix models
> #8,-0.22548,-0.95818,-0.17623,350.32,0.80248,-0.28523,0.52408,389.43,-0.55243,-0.023249,0.83323,582.32
> view matrix models
> #8,-0.3036,-0.95103,-0.058011,351.91,0.88451,-0.30396,0.35391,387.42,-0.35421,0.056136,0.93348,581.33
> ui mousemode right "translate selected models"
> view matrix models
> #8,-0.3036,-0.95103,-0.058011,359.35,0.88451,-0.30396,0.35391,385.58,-0.35421,0.056136,0.93348,586.37
> ui mousemode right "rotate selected models"
> view matrix models
> #8,-0.32482,-0.9245,0.19946,361.6,0.9278,-0.27055,0.25688,384.28,-0.18352,0.2685,0.94564,584.3
> view matrix models
> #8,-0.27759,-0.95214,0.12796,360.74,0.94212,-0.24373,0.23025,383.83,-0.18804,0.18446,0.96468,584.84
> view matrix models
> #8,-0.052316,-0.98479,0.16568,359.47,0.9806,-0.019274,0.19508,382.32,-0.18892,0.17267,0.96669,584.91
> volume #5 level 0.05217
> ui mousemode right clip
> volume #5 level 0.1153
> ui mousemode right "translate selected models"
> view matrix models
> #8,-0.052316,-0.98479,0.16568,434.57,0.9806,-0.019274,0.19508,331.79,-0.18892,0.17267,0.96669,566.71
> ui mousemode right "rotate selected models"
> view matrix models
> #8,0.3051,-0.91518,-0.26338,427.88,0.85205,0.1388,0.50472,334.78,-0.42535,-0.3784,0.82213,569.54
> ui mousemode right "translate selected models"
> view matrix models
> #8,0.3051,-0.91518,-0.26338,429.63,0.85205,0.1388,0.50472,338.7,-0.42535,-0.3784,0.82213,590.77
> view matrix models
> #8,0.3051,-0.91518,-0.26338,427.92,0.85205,0.1388,0.50472,341.73,-0.42535,-0.3784,0.82213,595.28
> ui mousemode right "rotate selected models"
> view matrix models
> #8,0.41522,-0.90379,-0.10372,428.39,0.74173,0.27033,0.6138,342.97,-0.52671,-0.33179,0.78262,595.53
> view matrix models
> #8,0.41891,-0.90352,-0.090411,428.48,0.73123,0.27664,0.62352,343.11,-0.53835,-0.32731,0.77656,595.55
> view matrix models
> #8,0.35537,-0.93028,-0.091064,429.07,0.73966,0.22031,0.6359,343.38,-0.5715,-0.29334,0.76638,595.58
> view matrix models
> #8,0.47009,-0.86177,-0.1907,427.06,0.77137,0.29613,0.56329,342.21,-0.42895,-0.4119,0.80395,595.29
> view matrix models
> #8,0.42451,-0.88862,-0.17364,427.66,0.77195,0.25499,0.5823,342.53,-0.47317,-0.38123,0.79421,595.42
> view matrix models
> #8,0.4645,-0.88458,0.041929,429.18,0.73537,0.41167,0.5383,341.8,-0.49342,-0.21921,0.84171,595.32
> ui mousemode right "translate selected models"
> view matrix models
> #8,0.4645,-0.88458,0.041929,426.69,0.73537,0.41167,0.5383,340.14,-0.49342,-0.21921,0.84171,595.5
> volume #5 level 0.03555
> volume #5 level 0.018
> volume #5 level 0.18
> hide #10/Q
> hide #10/Q cartoons
> hide #10/R cartoons
> hide #10/S cartoons
> hide #10/T cartoons
> show #!7 models
> select subtract #8
Nothing selected
> hide #8 models
> save /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs includeMaps true
> graphics silhouettes width 2.3
> cartoon style protein modeHelix tube radius 1.9 sides 24
> hide #!10 models
> show #!10 models
> hide #!10 models
> show #!10 models
> hide #!5 models
> select add #10
156266 atoms, 157935 bonds, 77 pseudobonds, 9614 residues, 3 models selected
> rainbow sel
> select subtract #10
Nothing selected
> show #!5 models
> close #7
> close #9
> fitmap #10 inMap #5
Fit molecule 8vwi (#10) to map J1770_FE (#5) using 156266 atoms
average map value = 0.1952, steps = 68
shifted from previous position = 1.47
rotated from previous position = 0.601 degrees
atoms outside contour = 69289, contour level = 0.18
Position of 8vwi (#10) relative to J1770_FE (#5) coordinates:
Matrix rotation and translation
-0.95114419 0.30851336 0.01201014 507.01050285
0.30844994 0.95121582 -0.00686308 171.49398090
-0.01354159 -0.00282325 -0.99990432 663.94584373
Axis 0.15616368 0.98772815 -0.00245184
Axis point 242.12403205 0.00000000 330.65209235
Rotation angle (degrees) 179.25888171
Shift along axis 246.93816886
> graphics silhouettes width 2
> cartoon style protein modeHelix tube radius 1.9 sides 24
> graphics silhouettes width 1.8
> cartoon style protein modeHelix tube radius 1.9 sides 24
> graphics silhouettes width 2
> cartoon style protein modeHelix tube radius 1.9 sides 24
> rainbow #!10
> color #10 #dfd9fcff
> color #10 #d2d2d3ff
> rainbow #10/G-I
> rainbow #10/G-I, a-c
> color #10 #d2d2d3ff
> rainbow #10/G-I, b-d
> show #8 models
> select add #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> save /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs includeMaps true
> combine #8
> select subtract #8
Nothing selected
> hide #8 models
> show #8 models
> hide #8 models
> select #7/A:470
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #7/A:400-500
824 atoms, 832 bonds, 101 residues, 1 model selected
> select ~sel & ##selected
4785 atoms, 4866 bonds, 590 residues, 1 model selected
> hide sel cartoons
> hide #7 models
> show #8 models
> select add #7
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> select subtract #7
Nothing selected
> hide #8 models
> combine #10
> select add #9
156266 atoms, 157935 bonds, 77 pseudobonds, 9614 residues, 3 models selected
> view matrix models
> #9,-0.91594,0.40116,0.011306,759.79,-0.40109,-0.916,0.0079862,699.55,0.01356,0.0027803,0.9999,284.09
> ui mousemode right "rotate selected models"
> view matrix models
> #9,-0.023922,0.9961,-0.084868,336.7,-0.99927,-0.021291,0.031773,633.54,0.029842,0.085566,0.99589,256.92
> ui mousemode right "translate selected models"
> view matrix models
> #9,-0.023922,0.9961,-0.084868,318.59,-0.99927,-0.021291,0.031773,660.89,0.029842,0.085566,0.99589,247.99
> fitmap #9 inMap #5
Fit molecule copy of 8vwi (#9) to map J1770_FE (#5) using 156266 atoms
average map value = 0.1949, steps = 156
shifted from previous position = 14.3
rotated from previous position = 14.5 degrees
atoms outside contour = 69434, contour level = 0.18
Position of copy of 8vwi (#9) relative to J1770_FE (#5) coordinates:
Matrix rotation and translation
-0.35161523 0.93614178 0.00230234 290.34008114
0.93604499 0.35161263 -0.01372346 166.93593417
-0.01365663 -0.00267028 -0.99990318 663.93776430
Axis 0.56936499 0.82206973 -0.00498571
Axis point 89.32448801 0.00000000 332.12096287
Rotation angle (degrees) 179.44384500
Shift along axis 299.23225730
> fitmap #9 inMap #5
Fit molecule copy of 8vwi (#9) to map J1770_FE (#5) using 156266 atoms
average map value = 0.1949, steps = 64
shifted from previous position = 0.0435
rotated from previous position = 0.0124 degrees
atoms outside contour = 69469, contour level = 0.18
Position of copy of 8vwi (#9) relative to J1770_FE (#5) coordinates:
Matrix rotation and translation
-0.35151369 0.93617997 0.00227930 290.29988511
0.93608576 0.35151128 -0.01353766 166.88646018
-0.01347489 -0.00262505 -0.99990577 663.90706851
Axis 0.56940993 0.82203903 -0.00491563
Axis point 89.28958893 0.00000000 332.10303069
Rotation angle (degrees) 179.45096154
Shift along axis 299.22329777
> fitmap #10 inMap #5
Fit molecule 8vwi (#10) to map J1770_FE (#5) using 156266 atoms
average map value = 0.1952, steps = 36
shifted from previous position = 0.00764
rotated from previous position = 0.00785 degrees
atoms outside contour = 69303, contour level = 0.18
Position of 8vwi (#10) relative to J1770_FE (#5) coordinates:
Matrix rotation and translation
-0.95113781 0.30853057 0.01207278 506.99277074
0.30846860 0.95121063 -0.00674289 171.46073760
-0.01356415 -0.00268934 -0.99990439 663.91009296
Axis 0.15617301 0.98772683 -0.00238753
Axis point 242.12405813 0.00000000 330.62354681
Rotation angle (degrees) 179.25640919
Shift along axis 246.94985558
> select subtract #9
Nothing selected
> color #5 #8c8dfcb8 models
> color #5 #8c8dfc8e models
> color #5 #8c8dfc97 models
> color #5 #8c8dfc8b models
> color #5 #8c8dfc8c models
> volume #5 level 0.185
> fitmap #10 inMap #5
Fit molecule 8vwi (#10) to map J1770_FE (#5) using 156266 atoms
average map value = 0.1952, steps = 40
shifted from previous position = 0.0422
rotated from previous position = 0.0145 degrees
atoms outside contour = 71358, contour level = 0.185
Position of 8vwi (#10) relative to J1770_FE (#5) coordinates:
Matrix rotation and translation
-0.95109418 0.30866693 0.01202463 506.97708424
0.30860782 0.95116688 -0.00654130 171.36935100
-0.01345651 -0.00251050 -0.99990631 663.86047366
Axis 0.15624444 0.98771576 -0.00229126
Axis point 242.10363491 0.00000000 330.59970629
Rotation angle (degrees) 179.26091982
Shift along axis 246.95548428
> fitmap #9 inMap #5
Fit molecule copy of 8vwi (#9) to map J1770_FE (#5) using 156266 atoms
average map value = 0.1949, steps = 60
shifted from previous position = 0.0357
rotated from previous position = 0.0123 degrees
atoms outside contour = 71528, contour level = 0.185
Position of copy of 8vwi (#9) relative to J1770_FE (#5) coordinates:
Matrix rotation and translation
-0.35160420 0.93614601 0.00226718 290.34012686
0.93604924 0.35160111 -0.01372904 166.93723607
-0.01364953 -0.00270499 -0.99990318 663.95299970
Axis 0.56936991 0.82206625 -0.00499799
Axis point 89.31818671 0.00000000 332.13076163
Rotation angle (degrees) 179.44531541
Shift along axis 299.22597294
> show #7 models
> hide #7 models
> show #8 models
> select add #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> view matrix models
> #8,0.4645,-0.88458,0.041929,254.05,0.73537,0.41167,0.5383,383.08,-0.49342,-0.21921,0.84171,578.19
> ui mousemode right "rotate selected models"
> view matrix models
> #8,0.90788,0.068724,0.41356,249.76,0.28545,-0.82382,-0.48973,382.97,0.30704,0.56267,-0.76755,554.8
> view matrix models
> #8,0.11967,-0.97019,0.21075,258.62,-0.64511,-0.23734,-0.7263,386.07,0.75466,-0.049041,-0.65428,554.64
> ui mousemode right "translate selected models"
> view matrix models
> #8,0.11967,-0.97019,0.21075,314.75,-0.64511,-0.23734,-0.7263,312.16,0.75466,-0.049041,-0.65428,576.83
> view matrix models
> #8,0.11967,-0.97019,0.21075,357.49,-0.64511,-0.23734,-0.7263,326.61,0.75466,-0.049041,-0.65428,592.4
> open
> /Users/ConstantinePetridis/Desktop/fold_2025_01_03_17_19/fold_2025_01_03_17_19_model_0.cif
Chain information for fold_2025_01_03_17_19_model_0.cif #11
---
Chain | Description
A | .
> open
> /Users/ConstantinePetridis/Desktop/fold_2025_01_03_17_19/fold_2025_01_03_17_19_model_1.cif
Chain information for fold_2025_01_03_17_19_model_1.cif #12
---
Chain | Description
A | .
> open
> /Users/ConstantinePetridis/Desktop/fold_2025_01_03_17_19/fold_2025_01_03_17_19_model_2.cif
Chain information for fold_2025_01_03_17_19_model_2.cif #13
---
Chain | Description
A | .
> open
> /Users/ConstantinePetridis/Desktop/fold_2025_01_03_17_19/fold_2025_01_03_17_19_model_3.cif
Chain information for fold_2025_01_03_17_19_model_3.cif #14
---
Chain | Description
A | .
> open
> /Users/ConstantinePetridis/Desktop/fold_2025_01_03_17_19/fold_2025_01_03_17_19_model_4.cif
Chain information for fold_2025_01_03_17_19_model_4.cif #15
---
Chain | Description
A | .
> select subtract #8
Nothing selected
> hide #11 models
> hide #12 models
> hide #13 models
> hide #14 models
> show #14 models
> hide #15 models
> show #13 models
> show #12 models
> show #15 models
> hide #14 models
> hide #13 models
> hide #12 models
> show #11 models
> hide #11 models
> show #14 models
> hide #15 models
> show #7 models
> hide #7 models
> show #7 models
> select add #7
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> view matrix models
> #7,0.4645,-0.88458,0.041929,265,0.73537,0.41167,0.5383,318.93,-0.49342,-0.21921,0.84171,-42.397
> select clear
> hide #!5 models
> show #!5 models
> select add #7
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> select subtract #7
Nothing selected
> select add #9
156266 atoms, 157935 bonds, 77 pseudobonds, 9614 residues, 3 models selected
> select add #8
161875 atoms, 163633 bonds, 77 pseudobonds, 10305 residues, 4 models selected
> select subtract #9
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> view matrix models
> #8,0.11967,-0.97019,0.21075,416.93,-0.64511,-0.23734,-0.7263,158.71,0.75466,-0.049041,-0.65428,598.5
> color #5 #d2d2d3ff models
> color #5 #d2d2d3ad models
> color #5 #8c8dfcff models
> color #5 #8c8dfcad models
> color #5 #8c8dfc93 models
> color #5 #8c8dfc8d models
> color #5 #8c8dfc54 models
> color #5 #8c8dfc65 models
> color #5 #8c8dfc72 models
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs
Opened emdb35243_ODV as #1, grid size 600,600,600, pixel 1.35, shown at level
0.37, step 1, values float32
Opened emdb43590_BV as #2, grid size 700,700,700, pixel 1.41, shown at level
0.292, step 1, values float32
Opened J1663_FE as #3, grid size 360,360,360, pixel 2.37, shown at level
0.211, step 1, values float32
Opened J1671_PE z flip as #4, grid size 360,360,360, pixel 2.37, shown at
level 0.268, step 1, values float32
Opened J1770_FE as #5, grid size 360,360,360, pixel 2.19, shown at level 0.18,
step 1, values float32
Opened cryosparc_P23_J1772_map_locres.mrc as #6, grid size 360,360,360, pixel
2.19, shown at level 7.51, step 2, values float32
Log from Fri Jan 3 17:12:52 2025UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs
Opened emdb35243_ODV as #1, grid size 600,600,600, pixel 1.35, shown at level
0.32, step 1, values float32
Opened emdb43590_BV as #2, grid size 700,700,700, pixel 1.41, shown at level
0.203, step 1, values float32
Opened J1663_FE as #3, grid size 360,360,360, pixel 2.37, shown at level
0.255, step 1, values float32
Opened J1671_PE z flip as #4, grid size 360,360,360, pixel 2.37, shown at
level 0.0763, step 1, values float32
Opened J1770_FE as #5, grid size 360,360,360, pixel 2.19, shown at level
0.214, step 1, values float32
Log from Tue Dec 24 23:20:40 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs
Opened emdb35243_ODV as #1, grid size 600,600,600, pixel 1.35, shown at level
0.284, step 1, values float32
Opened emdb43590_BV as #2, grid size 700,700,700, pixel 1.41, shown at level
0.159, step 1, values float32
Opened J1663_FE as #4, grid size 360,360,360, pixel 2.37, shown at level
0.0733, step 1, values float32
Opened J1671_PE z flip as #5, grid size 360,360,360, pixel 2.37, shown at
level 0.0913, step 1, values float32
Opened J1748_FE as #3, grid size 588,588,588, pixel 1.34, shown at level
0.0321, step 1, values float32
Log from Tue Dec 24 17:47:32 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs
Opened emdb35243_ODV as #1, grid size 600,600,600, pixel 1.35, shown at level
0.284, step 1, values float32
Opened emdb43590_BV as #2, grid size 700,700,700, pixel 1.41, shown at level
0.0696, step 1, values float32
Opened J1663_FE as #4, grid size 360,360,360, pixel 2.37, shown at level
0.0908, step 1, values float32
Opened J1671_PE z flip as #5, grid size 360,360,360, pixel 2.37, shown at
level 0.0913, step 1, values float32
Log from Tue Dec 24 14:48:02 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs
Opened emdb35243_ODV as #1, grid size 600,600,600, pixel 1.35, shown at level
0.229, step 1, values float32
Opened emdb43590_BV as #2, grid size 700,700,700, pixel 1.41, shown at level
0.167, step 1, values float32
Opened J1663_FE as #4, grid size 360,360,360, pixel 2.37, shown at level
0.254, step 1, values float32
Opened J1671_PE z flip as #5, grid size 360,360,360, pixel 2.37, shown at
level 0.109, step 1, values float32
Log from Tue Dec 24 14:33:25 2024 Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P32_J53_002_volume_map.mrc
Opened cryosparc_P32_J53_002_volume_map.mrc as #1, grid size 720,720,720,
pixel 1.06, shown at step 1, values float32
> volume #1 region 0,0,0,719,719,719 step 4
[Repeated 1 time(s)]
> volume #1 step 1
> volume #1 change image level -0.02425,0 level 0.1837,0.8 level 0.3523,1
> volume #1 level 0.151
Drag select of 1 cryosparc_P32_J53_002_volume_map.mrc
> select clear
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1668_003_volume_map.mrc
Opened cryosparc_P23_J1668_003_volume_map.mrc as #2, grid size 360,360,360,
pixel 2.37, shown at level 0.334, step 2, values float32
> hide #!1 models
> volume #2 step 1
> volume #2 level 0.2509
> ui mousemode right clip
> ui mousemode right translate
> volume #2 level 0.2417
> volume #2 level 0.2094
> volume #2 level 0.2532
> open emdb:43590\
Fetching url
ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-43590\/map/emd_43590\\.map.gz
failed:
<urlopen error 550 Failed to change directory.>
> open emdb:43590
Summary of feedback from opening 43590 fetched from emdb
---
notes | Fetching compressed map 43590 from ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-43590/map/emd_43590.map.gz
Fetching map header 43590 from
ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-43590/header/emd-43590.xml
Opened emdb 43590 as #3, grid size 700,700,700, pixel 1.41, shown at step 1,
values float32
> volume #3 region 0,0,0,699,699,699 step 4
[Repeated 1 time(s)]
> volume #3 step 1
> volume #3 change image level -0.05584,0 level 0.4551,0.8 level 0.773,1
> hide #!3 models
> show #!3 models
> hide #!2 models
> ui mousemode right clip
> ui mousemode right translate
> open emdb:43591
Summary of feedback from opening 43591 fetched from emdb
---
notes | Fetching compressed map 43591 from ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-43591/map/emd_43591.map.gz
Fetching map header 43591 from
ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-43591/header/emd-43591.xml
Opened emdb 43591 as #4, grid size 384,384,384, pixel 1.41, shown at level
0.225, step 2, values float32
> close #4
> close #1
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> open emdb:35243
Opened emdb 35243 as #1, grid size 600,600,600, pixel 1.35, shown at level
0.35, step 4, values float32
> close #2
> rename #1 emdb35243_ODV
> rename #3 emdb43590 id #2
> rename #2 emdb43590_BV
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1671_004_volume_map.mrc
Opened cryosparc_P23_J1671_004_volume_map.mrc as #3, grid size 360,360,360,
pixel 2.37, shown at level 0.355, step 2, values float32
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1663_003_volume_map.mrc
Opened cryosparc_P23_J1663_003_volume_map.mrc as #4, grid size 360,360,360,
pixel 2.37, shown at level 0.302, step 2, values float32
> hide #!4 models
> hide #!3 models
> rename #3 J1671_PE
> rename #4 J1663_FE
> ui tool show "Fit in Map"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> fitmap #1 inMap #2
Fit map emdb35243_ODV in map emdb43590_BV using 42321 points
correlation = 0.6504, correlation about mean = 0.07068, overlap = 3677
steps = 840, shift = 215, angle = 14.7 degrees
Position of emdb35243_ODV (#1) relative to emdb43590_BV (#2) coordinates:
Matrix rotation and translation
0.97285467 0.11356563 -0.20163492 106.14728499
-0.13398831 0.98682657 -0.09066670 173.53911084
0.18868208 0.11522224 0.97525530 66.06041994
Axis 0.40690739 -0.77140072 -0.48925178
Axis point 69.18299426 0.00000000 765.33059572
Rotation angle (degrees) 14.65465662
Shift along axis -122.99625756
> fitmap #1 inMap #2
Fit map emdb35243_ODV in map emdb43590_BV using 42321 points
correlation = 0.6504, correlation about mean = 0.07071, overlap = 3677
steps = 104, shift = 0.0146, angle = 0.00468 degrees
Position of emdb35243_ODV (#1) relative to emdb43590_BV (#2) coordinates:
Matrix rotation and translation
0.97283638 0.11360386 -0.20170163 106.14959138
-0.13402943 0.98682367 -0.09063750 173.53917511
0.18874717 0.11520941 0.97524422 66.03781833
Axis 0.40672513 -0.77147305 -0.48928928
Axis point 69.36205442 0.00000000 764.99261400
Rotation angle (degrees) 14.65831075
Shift along axis -123.01868679
> fitmap #1 inMap #2
Fit map emdb35243_ODV in map emdb43590_BV using 42321 points
correlation = 0.6504, correlation about mean = 0.07066, overlap = 3677
steps = 60, shift = 0.0202, angle = 0.00485 degrees
Position of emdb35243_ODV (#1) relative to emdb43590_BV (#2) coordinates:
Matrix rotation and translation
0.97285464 0.11356683 -0.20163440 106.14869030
-0.13397976 0.98683234 -0.09061650 173.52336845
0.18868832 0.11517161 0.97526008 66.07751356
Axis 0.40674044 -0.77147333 -0.48927612
Axis point 69.15375523 0.00000000 765.29725022
Rotation angle (degrees) 14.65346616
Shift along axis -123.02383462
> select add #2
4 models selected
> select add #1
6 models selected
> select subtract #2
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.17627,0.98434,-0.00073339,8.4342,-0.98191,0.17589,0.070127,791.23,0.069158,-0.011641,0.99754,158.34
> fitmap #1 inMap #2
Fit map emdb35243_ODV in map emdb43590_BV using 42321 points
correlation = 0.8508, correlation about mean = 0.2973, overlap = 5847
steps = 124, shift = 16.6, angle = 5.06 degrees
Position of emdb35243_ODV (#1) relative to emdb43590_BV (#2) coordinates:
Matrix rotation and translation
0.22884137 0.97346373 0.00000023 6.56644567
-0.97346373 0.22884137 0.00000059 795.07225194
0.00000052 -0.00000036 1.00000000 179.58410153
Axis -0.00000048 -0.00000015 -1.00000000
Axis point 505.10857801 393.39162659 0.00000000
Rotation angle (degrees) 76.77113185
Shift along axis -179.58422442
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> volume #1 step 1
> ui mousemode right rotate
> ui mousemode right translate
> select subtract #1
Nothing selected
> volume #3 level 0.2279
> select add #3
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #3,-0.62102,0.77799,-0.095165,399.88,0.76736,0.62824,0.12834,-223.39,0.15964,0.0066773,-0.98715,777.94
> ui mousemode right "translate selected models"
Drag select of 1 emdb35243_ODV , 2 emdb43590_BV , 3 J1671_PE
> select clear
> select subtract #3
Nothing selected
> select add #3
2 models selected
> view matrix models
> #3,-0.62102,0.77799,-0.095165,386.59,0.76736,0.62824,0.12834,-139.06,0.15964,0.0066773,-0.98715,840.43
> ui mousemode right "rotate selected models"
> view matrix models
> #3,-0.59828,0.78575,0.15701,265.87,0.79956,0.59829,0.052522,-107.63,-0.05267,0.15696,-0.9862,866.45
> ui mousemode right "translate selected models"
> view matrix models
> #3,-0.59828,0.78575,0.15701,346.36,0.79956,0.59829,0.052522,-134.36,-0.05267,0.15696,-0.9862,880.56
> view matrix models
> #3,-0.59828,0.78575,0.15701,-3.4192,0.79956,0.59829,0.052522,-21.834,-0.05267,0.15696,-0.9862,804.23
> vflip #3
Unknown command: vflip #3
> volume flip #3
Opened J1671_PE z flip as #5, grid size 360,360,360, pixel 2.37, shown at step
1, values float32
> close #3
> ui mousemode right "rotate selected models"
> select add #5
2 models selected
> view matrix models
> #5,-0.98925,0.0012409,-0.14622,625.6,0.060453,-0.90704,-0.41668,1132.8,-0.13315,-0.42104,0.89722,289.05
> ui mousemode right "translate selected models"
> view matrix models
> #5,-0.98925,0.0012409,-0.14622,983.74,0.060453,-0.90704,-0.41668,1047,-0.13315,-0.42104,0.89722,347.49
> ui mousemode right "rotate selected models"
> view matrix models
> #5,-0.9746,0.21646,-0.05741,848.26,-0.17632,-0.89974,-0.39923,1137.4,-0.13807,-0.37897,0.91505,324.12
> view matrix models
> #5,0.015509,0.99968,0.019979,59.911,-0.99511,0.013483,0.097818,887.14,0.097517,-0.021399,0.995,37.586
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> fitmap #5 inMap #1
Fit map J1671_PE z flip in map emdb35243_ODV using 1058456 points
correlation = 0.7675, correlation about mean = 0.06833, overlap = 1.003e+05
steps = 264, shift = 16.4, angle = 7.76 degrees
Position of J1671_PE z flip (#5) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.95303348 0.30286496 0.00002327 -130.17331272
-0.30286496 0.95303348 0.00003703 127.93398000
-0.00001097 -0.00004234 1.00000000 -121.40095851
Axis -0.00013103 0.00005653 -0.99999999
Axis point 347.39215679 483.62545297 0.00000000
Rotation angle (degrees) 17.62976098
Shift along axis 121.42524514
> view matrix models
> #5,0.30902,0.29306,0.90478,-145.34,-0.83128,-0.37894,0.40666,837.38,0.46203,-0.87779,0.12651,604.39
> undo
> select add #5
3 models selected
> select subtract #5
Nothing selected
> ui mousemode right rotate
> ui mousemode right translate
> show #!4 models
> select add #4
2 models selected
> ui mousemode right "translate selected models"
> view matrix models #4,1,0,0,344.93,0,1,0,0.63352,0,0,1,128.18
> volume #4 level 0.2379
> view matrix models #4,1,0,0,81.692,0,1,0,-19.877,0,0,1,125.49
> view matrix models #4,1,0,0,83.558,0,1,0,70.413,0,0,1,133.11
> view matrix models #4,1,0,0,70.873,0,1,0,70.205,0,0,1,133.5
> fitmap #4 inMap #1
Fit map J1663_FE in map emdb35243_ODV using 99734 points
correlation = 0.83, correlation about mean = 0.228, overlap = 9730
steps = 88, shift = 14.2, angle = 0.0496 degrees
Position of J1663_FE (#4) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.22800509 -0.97365994 -0.00000874 722.74511445
0.97365994 0.22800508 0.00010883 -107.11178091
-0.00010397 -0.00003333 0.99999999 -59.46670416
Axis -0.00007300 0.00004890 1.00000000
Axis point 428.91462448 402.21523340 0.00000000
Rotation angle (degrees) 76.82034903
Shift along axis -59.52470265
> ui mousemode right zoom
> ui mousemode right rotate
> select subtract #4
Nothing selected
> ui mousemode right translate
> volume #2 level 0.2977
> volume #1 level 0.3465
> volume #4 level 0.2335
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> volume #4 step 1
> fitmap #4 inMap #1
Fit map J1663_FE in map emdb35243_ODV using 827535 points
correlation = 0.8296, correlation about mean = 0.234, overlap = 7.948e+04
steps = 44, shift = 0.055, angle = 0.0137 degrees
Position of J1663_FE (#4) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.22793154 -0.97367716 0.00001878 722.76413763
0.97367715 0.22793154 -0.00011550 -106.96571476
0.00010818 0.00004462 0.99999999 -59.55985998
Axis 0.00008222 -0.00004590 1.00000000
Axis point 428.83496900 402.26790985 0.00000000
Rotation angle (degrees) 76.82467682
Shift along axis -59.49552349
> fitmap #2 inMap #1
Fit map emdb43590_BV in map emdb35243_ODV using 3024743 points
correlation = 0.7983, correlation about mean = 0.1452, overlap = 3.651e+05
steps = 44, shift = 0.128, angle = 0.0297 degrees
Position of emdb43590_BV (#2) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.22934616 -0.97334492 0.00000038 772.16317142
0.97334492 0.22934616 -0.00000003 -188.52800554
-0.00000006 0.00000038 1.00000000 -179.71258188
Axis 0.00000021 0.00000022 1.00000000
Axis point 505.13813030 393.36165391 0.00000000
Rotation angle (degrees) 76.74141952
Shift along axis -179.71246293
> fitmap #4 inMap #1
Fit map J1663_FE in map emdb35243_ODV using 827535 points
correlation = 0.8296, correlation about mean = 0.234, overlap = 7.948e+04
steps = 36, shift = 0.0126, angle = 0.00531 degrees
Position of J1663_FE (#4) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.22793225 -0.97367699 -0.00000066 722.77597776
0.97367699 0.22793225 -0.00002493 -107.00856619
0.00002443 0.00000504 1.00000000 -59.50745513
Axis 0.00001539 -0.00001288 1.00000000
Axis point 428.86473096 402.25276864 0.00000000
Rotation angle (degrees) 76.82463471
Shift along axis -59.49495194
> fitmap #5 inMap #1
Fit map J1671_PE z flip in map emdb35243_ODV using 1058456 points
correlation = 0.7675, correlation about mean = 0.06833, overlap = 1.003e+05
steps = 96, shift = 0.0142, angle = 0.00165 degrees
Position of J1671_PE z flip (#5) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.95302877 0.30287977 0.00000058 -130.16785956
-0.30287977 0.95302877 0.00002874 127.93693847
0.00000815 -0.00002757 1.00000000 -121.42680505
Axis -0.00009296 -0.00001250 -1.00000000
Axis point 347.40797876 483.60691161 0.00000000
Rotation angle (degrees) 17.63065109
Shift along axis 121.43730542
> hide #!4 models
> show #!4 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> ui mousemode right clip
> volume #2 color white
> volume #2 color #ff9300
> volume #2 color #942192
> volume #1 color #ff40ff
> volume #1 color white
> volume #2 color white
> ui mousemode right translate
> volume #2 level 0.1926
> volume #1 level 0.2772
> volume #2 level 0.2234
> volume #2 level 0.29
> volume #1 level 0.3743
> volume #2 level 0.3284
> volume #5 color #ff2600
> volume #5 color #00fdff
> volume #5 color #7a81ff
> hide #!1 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> volume #5 level 0.2478
> volume #1 level 0.3951
> volume #4 level 0.2535
> hide #!2 models
> show #!2 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> show #!1 models
> hide #!2 models
> set bgColor white
> graphics silhouettes true
> lighting depthCue false
> lighting soft
> graphics bgColor white
> graphics silhouettes width 2.3
> volume #1 level 0.2287
> show #!2 models
> hide #!1 models
> volume #2 level 0.1747
> volume #2 level 0.2541
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> volume #5 level 0.1086
> volume #2 level 0.167
> save /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs includeMaps true
——— End of log from Tue Dec 24 14:33:25 2024 ———
opened ChimeraX session
> hide #!5 models
> color #2 #fffb00ff models
> hide #!1 models
> show #!4 models
> volume #4 level 0.1109
> volume #2 level 0.2362
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!1 models
> hide #!1 models
> show #!1 models
> show #!5 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!4 models
> show #!4 models
> hide #!5 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!4 models
> volume #1 level 0.2842
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> volume #2 level 0.2669
> show #!4 models
> volume #4 level 0.1666
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> hide #!1 models
> show #!1 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> show #!2 models
> hide #!1 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> show #!5 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!5 models
> show #!1 models
> hide #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> volume #4 level 0.09079
> hide #!4 models
> show #!5 models
> volume #2 level 0.1363
> volume #5 level 0.09125
> hide #!2 models
> show #!2 models
> show #!4 models
> hide #!5 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!4 models
> volume #2 level 0.003029
> volume #2 level 0.06965
> save /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs includeMaps true
——— End of log from Tue Dec 24 14:48:02 2024 ———
opened ChimeraX session
> ui tool show "Fit in Map"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
[Repeated 1 time(s)]
> show #!5 models
> show #!4 models
> show #!1 models
> fitmap #2 inMap #1
Fit map emdb43590_BV in map emdb35243_ODV using 14658219 points
correlation = 0.7541, correlation about mean = 0.4206, overlap = 6.34e+05
steps = 44, shift = 0.0918, angle = 0.00815 degrees
Position of emdb43590_BV (#2) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.22948454 -0.97331231 -0.00000019 772.07912980
0.97331231 0.22948454 0.00000002 -188.58027009
0.00000003 -0.00000019 1.00000000 -179.80414440
Axis -0.00000011 -0.00000011 1.00000000
Axis point 505.14652168 393.35360876 0.00000000
Rotation angle (degrees) 76.73327344
Shift along axis -179.80420481
> volume #2 level 0.1593
> fitmap #2 inMap #1
Fit map emdb43590_BV in map emdb35243_ODV using 6420765 points
correlation = 0.788, correlation about mean = 0.2153, overlap = 5.315e+05
steps = 40, shift = 0.0561, angle = 0.0102 degrees
Position of emdb43590_BV (#2) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.22965823 -0.97327134 0.00000041 771.97288598
0.97327134 0.22965823 0.00000005 -188.64582157
-0.00000014 0.00000039 1.00000000 -179.74825591
Axis 0.00000018 0.00000028 1.00000000
Axis point 505.15663052 393.34320391 0.00000000
Rotation angle (degrees) 76.72304870
Shift along axis -179.74817265
> fitmap #4 inMap #1
Fit map J1663_FE in map emdb35243_ODV using 3515214 points
correlation = 0.7547, correlation about mean = 0.4947, overlap = 1.23e+05
steps = 44, shift = 1.44, angle = 0.00292 degrees
Position of J1663_FE (#4) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.22797990 -0.97366584 0.00000032 722.75242081
0.97366584 0.22797990 -0.00001052 -107.05172737
0.00001017 0.00000271 1.00000000 -58.05938758
Axis 0.00000679 -0.00000506 1.00000000
Axis point 428.88300196 402.23914637 0.00000000
Rotation angle (degrees) 76.82183100
Shift along axis -58.05393872
> fitmap #5 inMap #1
Fit map J1671_PE z flip in map emdb35243_ODV using 2887742 points
correlation = 0.7439, correlation about mean = 0.3608, overlap = 1.359e+05
steps = 84, shift = 0.0126, angle = 0.0165 degrees
Position of J1671_PE z flip (#5) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.95294192 0.30315291 -0.00002329 -130.23084526
-0.30315291 0.95294192 0.00003337 128.08923520
0.00003231 -0.00002474 1.00000000 -121.44780533
Axis -0.00009584 -0.00009171 -0.99999999
Axis point 347.50822763 483.49288311 0.00000000
Rotation angle (degrees) 17.64707305
Shift along axis 121.44853799
> save /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs includeMaps true
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1748_004_volume_map.mrc
Opened cryosparc_P23_J1748_004_volume_map.mrc as #3, grid size 588,588,588,
pixel 1.34, shown at level 0.129, step 4, values float32
> hide #!4 models
> hide #!5 models
> hide #!3 models
> hide #!2 models
> show #!3 models
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> volume #3 step 1
> ui mousemode right clip
> ui mousemode right translate
> select add #3
3 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #3,0.40948,-0.77865,-0.47542,760.83,-0.71746,-0.59673,0.35938,744.31,-0.56353,0.19394,-0.80301,985.38
> view matrix models
> #3,0.32041,-0.69825,0.64014,244.66,-0.90173,-0.43184,-0.019699,928.51,0.2902,-0.57093,-0.768,934.07
> view matrix models
> #3,0.39371,-0.91284,-0.10826,648.9,-0.91524,-0.37831,-0.1386,968.12,0.085564,0.15365,-0.98441,830.02
> ui mousemode right "translate selected models"
> view matrix models
> #3,0.39371,-0.91284,-0.10826,762.28,-0.91524,-0.37831,-0.1386,1064.7,0.085564,0.15365,-0.98441,801.88
> ui mousemode right "rotate selected models"
> view matrix models
> #3,0.37861,-0.92556,-0.0013901,723.46,-0.91898,-0.37574,-0.11957,1056.3,0.11015,0.046549,-0.99282,838.31
> ui mousemode right "translate selected models"
> view matrix models
> #3,0.37861,-0.92556,-0.0013901,717.57,-0.91898,-0.37574,-0.11957,1053,0.11015,0.046549,-0.99282,889.03
> view matrix models
> #3,0.37861,-0.92556,-0.0013901,714.64,-0.91898,-0.37574,-0.11957,1041.5,0.11015,0.046549,-0.99282,889.68
> fitmap #3 inMap #1
Fit map cryosparc_P23_J1748_004_volume_map.mrc in map emdb35243_ODV using
2033906 points
correlation = 0.8586, correlation about mean = 0.213, overlap = 1.155e+05
steps = 176, shift = 23, angle = 7.82 degrees
Position of cryosparc_P23_J1748_004_volume_map.mrc (#3) relative to
emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.99578155 0.09175521 0.00000256 -23.45858541
0.09175519 -0.99578156 -0.00000778 761.14443305
0.00000183 0.00000798 -0.99999997 760.15790824
Axis 0.99892332 0.04637151 -0.00137005
Axis point 0.00000000 381.11520699 380.06436878
Rotation angle (degrees) 179.99954802
Shift along axis 10.82063276
> fitmap #3 inMap #1
Fit map cryosparc_P23_J1748_004_volume_map.mrc in map emdb35243_ODV using
2033906 points
correlation = 0.8586, correlation about mean = 0.2131, overlap = 1.155e+05
steps = 36, shift = 0.0092, angle = 0.00079 degrees
Position of cryosparc_P23_J1748_004_volume_map.mrc (#3) relative to
emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.99578150 0.09175583 0.00001530 -23.45998132
0.09175581 -0.99578151 -0.00000256 761.14824253
0.00001500 0.00000396 -0.99999997 760.15889297
Axis 0.99888925 0.04700335 -0.00330788
Axis point 0.00000000 381.12546248 380.04122309
Rotation angle (degrees) 179.99981308
Shift along axis 9.82808080
> select subtract #3
Nothing selected
> volume #3 level 0.03398
> volume #3 level 0.04519
> volume #3 color #3b8fff
> ui mousemode right clip
> ui mousemode right translate
> hide #!1 models
> volume #3 level 0.05546
> volume #4 level 0.1149
> volume #4 level 0.1236
> show #!4 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> volume #3 level 0.05173
> volume #3 level 0.03211
> volume #4 level 0.07328
> hide #!4 models
> show #!4 models
> hide #!4 models
> rename #3 J1748_FE
> show #!5 models
> hide #!5 models
> save /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs includeMaps true
——— End of log from Tue Dec 24 17:47:32 2024 ———
opened ChimeraX session
> show #!2 models
> show #!1 models
> hide #!2 models
> hide #!1 models
> volume #3 level 0.04733
> volume #3 level 0.06065
> ui mousemode right clip
> show #!1 models
> show #!2 models
> show #!5 models
> volume #5 level 0.1186
> volume #5 level 0.1111
> volume #2 level 0.1926
> show #!4 models
> volume #4 level 0.1535
> hide #!5 models
> close #4
> volume #2 level 0.2003
> volume #1 level 0.2218
> hide #!2 models
> hide #!3 models
> show #!2 models
> hide #!2 models
> show #!3 models
> volume #1 level 0.1698
> hide #!3 models
> volume #1 level 0.2252
> volume #1 level 0.2703
> hide #!5 models
> show #!3 models
> volume #3 level 0.06804
> volume #3 level 0.07359
> volume #3 level 0.05788
> ui tool show "Hide Dust"
> surface dust #3 size 8.04
> surface dust #3 size 8.8
> surface dust #3 size 18.45
> surface dust #3 size 18.75
> surface dust #3 size 37.37
> volume #1 level 0.2495
> volume #1 level 0.246
> surface dust #3 size 37.37
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> surface dust #1 size 8.1
> surface dust #1 size 8.02
> surface dust #1 size 20.2
> surface dust #1 size 18.89
> surface dust #1 size 23.12
> volume #2 level 0.2054
> volume #2 color #dfd9fc
> volume #2 color #c2cafd
> volume #2 color #f34d8f
> volume #2 color #3b8fff
> volume #2 color #7a81ff
> volume #2 color #d2d2d3
> volume #2 color #dfd9fc
> volume #2 color #c2cafd
> volume #2 color #f34d8f
> volume #2 color #235091
> volume #2 color #d2d2d3
> volume #2 color #d9776e
> volume #5 level 0.1409
> ui mousemode right rotate
> ui mousemode right translate
> surface dust #2 size 8.46
> surface dust #2 size 8.3
[Repeated 1 time(s)]
> transparency #3 50
> transparency #3 40
> volume #2 level 0.2403
> volume #3 level 0.06527
> volume #1 level 0.2595
> volume #1 color #c2cafd
> ui tool show "Hide Dust"
> surface dust #1 size 1.35
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> surface dust #5 size 14.2
> surface dust #5 size 15.03
> surface dust #5 size 37.91
> surface dust #1 size 12.83
> surface dust #1 size 13.96
> surface dust #1 size 33.45
> surface dust #1 size 14.19
> surface dust #1 size 27.82
> surface dust #1 size 33.45
> surface dust #1 size 58.26
> ui mousemode right clip
> volume #5 level 0.02913
> volume #5 level 0.1086
> volume #5 level 0.07634
> transparency #3 0
> volume #3 level 0.0158
> volume #3 level 0.03958
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1663_003_volume_map.mrc
Opened cryosparc_P23_J1663_003_volume_map.mrc as #4, grid size 360,360,360,
pixel 2.37, shown at level 0.302, step 2, values float32
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> volume #4 step 1
> volume #4 level 0.09233
> volume #4 level 0.1146
> ui mousemode right translate
> volume #4 level 0.0901
> ui mousemode right clip
> select add #4
3 models selected
> ui mousemode right "translate selected models"
> view matrix models #4,1,0,0,65.037,0,1,0,-9.76,0,0,1,122.44
> ui tool show "Fit in Map"
> surface dust #1 size 58.3
> surface dust #1 size 58.42
> surface dust #1 size 58.58
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
[Repeated 1 time(s)]
> fitmap #4 inMap #3
Fit map cryosparc_P23_J1663_003_volume_map.mrc in map J1748_FE using 3557522
points
correlation = 0.4347, correlation about mean = -0.02198, overlap = 1.693e+04
steps = 188, shift = 24, angle = 3.93 degrees
Position of cryosparc_P23_J1663_003_volume_map.mrc (#4) relative to J1748_FE
(#3) coordinates:
Matrix rotation and translation
0.33050798 -0.94178203 0.06173458 681.45164000
-0.94275723 -0.33251334 -0.02537203 979.22027943
0.04442248 -0.04981506 -0.99777009 818.62961298
Axis -0.81561934 0.57767311 -0.03254049
Axis point 0.00000000 734.69129100 391.17873063
Rotation angle (degrees) 179.14142847
Shift along axis -16.77451928
> view matrix models
> #4,0.99891,0.016612,0.043643,30.823,-0.014401,0.99862,-0.050483,34.399,-0.044421,0.049799,0.99777,106.43
> ui mousemode right "rotate selected models"
> view matrix models
> #4,0.99791,-0.016664,-0.062458,89.788,0.016304,0.99985,-0.0062726,2.309,0.062553,0.0052411,0.99803,79.721
> fitmap #4 inMap #3
Fit map cryosparc_P23_J1663_003_volume_map.mrc in map J1748_FE using 3557522
points
correlation = 0.4361, correlation about mean = -0.01796, overlap = 1.701e+04
steps = 152, shift = 17, angle = 1.78 degrees
Position of cryosparc_P23_J1663_003_volume_map.mrc (#4) relative to J1748_FE
(#3) coordinates:
Matrix rotation and translation
0.31830062 -0.94776499 -0.02064779 722.74851077
-0.94395812 -0.31887832 0.08520406 917.64991711
-0.08733756 -0.00762985 -0.99614958 857.77294072
Axis -0.81170878 0.58311312 0.03328592
Axis point 0.00000000 733.56123549 427.29369258
Rotation angle (degrees) 176.72179560
Shift along axis -23.01584556
> volume #4 level 0.1302
> ui mousemode right clip
> ui mousemode right "translate selected models"
> view matrix models
> #4,0.99618,0.0017832,-0.087354,122.51,-0.0024414,0.99997,-0.0074289,67.89,0.087338,0.0076138,0.99615,82.111
> view matrix models
> #4,0.99618,0.0017832,-0.087354,111.55,-0.0024414,0.99997,-0.0074289,66.848,0.087338,0.0076138,0.99615,83.851
> ui mousemode right "rotate selected models"
> view matrix models
> #4,0.99989,-0.012706,0.0079521,78.608,0.012717,0.99992,-0.0013316,58.009,-0.0079345,0.0014326,0.99997,125.58
> ui mousemode right "translate selected models"
> view matrix models
> #4,0.99989,-0.012706,0.0079521,73.359,0.012717,0.99992,-0.0013316,57.418,-0.0079345,0.0014326,0.99997,127
> fitmap #4 inMap #3
Fit map cryosparc_P23_J1663_003_volume_map.mrc in map J1748_FE using 1934742
points
correlation = 0.9722, correlation about mean = 0.8889, overlap = 4.877e+04
steps = 72, shift = 7.35, angle = 0.83 degrees
Position of cryosparc_P23_J1663_003_volume_map.mrc (#4) relative to J1748_FE
(#3) coordinates:
Matrix rotation and translation
0.31655931 -0.94857276 -0.00000334 663.27925709
-0.94857276 -0.31655929 -0.00000757 933.06974962
0.00000612 0.00000557 -1.00000003 819.98524864
Axis 0.81162632 -0.58417690 0.00025913
Axis point 0.00000000 705.23406850 409.88905627
Rotation angle (degrees) 179.99953615
Shift along axis -6.53039807
> select subtract #4
Nothing selected
> ui mousemode right translate
> volume #3 level 0.05385
> transparency #3 50
> transparency #3 0
> volume #3 level 0.051
> ui mousemode right clip
> volume #3 level 0.03007
> volume #3 level 0.04434
> volume #3 level 0.03958
> volume #3 level 0.04
> volume #3 level 0.042
> show #!2 models
> show #!1 models
> hide #!3 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> volume #1 level 0.2422
> volume #1 level 0.25
> volume #2 level 0.248
> ui mousemode right translate
> volume #2 level 0.275
> volume #1 level 0.24
> volume #2 level 0.28
> ui mousemode right clip
> ui mousemode right "clip rotate"
> ui mousemode right clip
> ui mousemode right "clip rotate"
> ui mousemode right clip
> ui tool show "Side View"
> ui mousemode right translate
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!5 models
> hide #!5 models
> show #!3 models
> show #!4 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!2 models
> hide #!1 models
> volume #4 level 0.1035
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!3 models
> volume #4 level 0.1146
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!3 models
> hide #!4 models
> show #!3 models
> show #!2 models
> show #!1 models
> hide #!3 models
> transparency #2 50
> transparency #2 40
> volume #1 level 0.2712
> show #!5 models
> hide #!5 models
> color #2 #d2d2d3ff models
> color #2 #c2cafdff models
> color #1 #f34d8fff models
> color #1 #c1153cff models
> color #1 #f34d8fff models
> color #1 white models
> color #1 #5f90e2ff models
> color #1 #74fad9ff models
> color #1 white models
> color #1 #71ed4eff models
> color #1 white models
> color #1 #6057e0ff models
> transparency #2 40
> transparency #2 0
> transparency #1 40
> transparency #2 40
> transparency #1 0
> color #1 #7f51e0ff models
> color #1 #5573e1ff models
> color #1 #4e5ce0ff models
> color #2 #c3b2e9ff models
> color #2 #c9b8eaff models
> color #2 #7a81ffff models
> color #2 #fefefeff models
> color #2 white models
> transparency #2 0
> color #2 #f6f0e1ff models
> color #2 #d2d2d3ff models
> color #2 #d2d2d366 models
> transparency #2 0
> transparency #1 40
> transparency #2 40
> transparency #1 40
> transparency #1 0
> lighting gentle
> lighting soft
> lighting gentle
> lighting flat
> lighting gentle
> lighting soft
> lighting gentle
> lighting soft
> color #1 #d2d2d3ff models
> color #2 #3b8fffff models
> color #2 #c2cafdff models
> color #2 #7a81ffff models
> transparency #1 40
> transparency #1 0
> transparency #2 40
> color #1 #fafcfbff models
> color #1 #f7eef5ff models
> color #1 #f1dcedff models
> color #1 #f9f3f0ff models
> color #1 #f8f7ebff models
> color #1 #edf8caff models
> color #1 #f0f8cbff models
> color #1 #f8f1d9ff models
> color #1 #f8efd7ff models
> color #1 #e1d8c3ff models
> color #1 #f2e9d2ff models
> color #1 #dfd7c2ff models
> color #1 #dbd3beff models
> color #1 #7a81ffff models
> color #2 #dbd3beff models
> transparency #2 40
> transparency #2 0
> transparency #1 40
> color #2 #d2e2d7ff models
> color #2 #c9e2c2ff models
> color #2 #dcd9e2ff models
> color #2 #f8f4ffff models
> color #2 #e4e0eaff models
> transparency #1 50
> transparency #1 35
> name view front
"front": invalid atom specifier
> view name front
> save /Users/ConstantinePetridis/Desktop/BV_ODV.png width 3000 height 1962
> supersample 4
> color #2 #8d8b91ff models
> color #2 #a3a1a8ff models
> transparency #1 35
> transparency #2 0
> color #2 #f7f5ffff models
> color #2 #cbc9d1ff models
> color #2 #cbc9d2ff models
> lighting soft
> lighting gentle
> lighting soft
> ui mousemode right rotate
> ui mousemode right zoom
> ui mousemode right rotate
> ui mousemode right translate
> ui mousemode right "clip rotate"
> ui mousemode right clip
> ui mousemode right translate
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> volume #1 level 0.3024
> color #1 #7a81ffff models
> color #1 #7a81ff00 models
> color #1 #7a81ff34 models
> color #1 #7a81ffff models
> ui mousemode right clip
> ui mousemode right "clip rotate"
> ui mousemode right clip
> ui mousemode right translate
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> hide #!2 models
> show #!1 models
> show #!4 models
> hide #!4 models
> show #!3 models
> hide #!3 models
> show #!2 models
> hide #!2 models
> volume #1 level 0.2885
> volume #1 level 0.2469
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> volume #2 level 0.2031
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!3 models
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!3 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!3 models
> hide #!2 models
> show #!3 models
> volume #1 level 0.3197
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> volume #3 level 0.05913
> volume #3 level 0.05722
> hide #!1 models
> show #!1 models
> hide #!3 models
> show #!3 models
> hide #!1 models
> volume #3 level 0.07815
> volume #3 level 0.08481
> volume #3 level 0.08
> hide #!1 models
> volume #3 level 0.1009
> show #!4 models
> volume #4 level 0.2261
> volume #4 level 0.235
> volume #3 level 0.09998
> volume #3 level 0.08856
> volume #4 level 0.2551
> volume #3 level 0.1019
> show #!4 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> close #3
> rename #4 J1663_FE
> rename #4 J1663_FE id #3
> rename #5 id #4
> save /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs includeMaps true
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1770_003_volume_map.mrc
Opened cryosparc_P23_J1770_003_volume_map.mrc as #5, grid size 360,360,360,
pixel 2.19, shown at level 0.277, step 2, values float32
> hide #!3 models
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> volume #5 step 1
> volume #5 level 0.1721
> show #!3 models
> hide #!4 models
> volume #5 level 0.2115
> volume #5 level 0.2174
> ui mousemode right "rotate selected models"
> select add #5
3 models selected
> view matrix models
> #5,0.95745,0.28858,0.0043312,-98.953,0.28414,-0.93989,-0.18942,741.06,-0.050591,0.18259,-0.98189,876.7
> ui mousemode right "translate selected models"
> view matrix models
> #5,0.95745,0.28858,0.0043312,-4.1809,0.28414,-0.93989,-0.18942,804.6,-0.050591,0.18259,-0.98189,869.49
> ui mousemode right "rotate selected models"
> view matrix models
> #5,0.9971,0.066566,0.037008,52.351,0.073264,-0.97107,-0.22728,917.7,0.020808,0.22933,-0.97313,818.85
> view matrix models
> #5,0.99854,-0.036256,0.040116,90.834,-0.024169,-0.96292,-0.26869,972.29,0.048371,0.26733,-0.96239,787.99
> view matrix models
> #5,0.99559,-0.055166,-0.07586,153.79,-0.070768,-0.97259,-0.22149,972.33,-0.061562,0.22588,-0.97221,852.22
> ui mousemode right "translate selected models"
> view matrix models
> #5,0.99559,-0.055166,-0.07586,138.73,-0.070768,-0.97259,-0.22149,972.47,-0.061562,0.22588,-0.97221,837.2
> fitmap #5 inMap #3
Fit map cryosparc_P23_J1770_003_volume_map.mrc in map J1663_FE using 822201
points
correlation = 0.9965, correlation about mean = 0.9334, overlap = 9.029e+04
steps = 208, shift = 47.2, angle = 16.4 degrees
Position of cryosparc_P23_J1770_003_volume_map.mrc (#5) relative to J1663_FE
(#3) coordinates:
Matrix rotation and translation
0.99517678 0.09809776 0.00003947 -4.57853809
0.09809776 -0.99517678 -0.00003620 779.53497612
0.00003573 0.00003990 -1.00000000 819.70376405
Axis 0.99879463 0.04908453 0.00003744
Axis point 0.00000000 389.87217475 409.85938563
Rotation angle (degrees) 179.99781716
Shift along axis 33.72077697
> select subtract #5
Nothing selected
> ui mousemode right translate
> volume #5 level 0.2155
> volume #5 level 0.2135
> ui mousemode right clip
> ui mousemode right translate
> rename #5 J1770_FE
> save /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs includeMaps true
——— End of log from Tue Dec 24 23:20:40 2024 ———
opened ChimeraX session
> ui mousemode right clip
> show #!4 models
> volume #4 level 0.29
> hide #!4 models
> hide #!3 models
> show #!3 models
> hide #!5 models
> show #!5 models
> hide #!3 models
> show #!3 models
> hide #!5 models
> show #!5 models
> hide #!3 models
> show #!3 models
> hide #!5 models
> show #!5 models
> hide #!3 models
> show #!2 models
> volume #2 level 0.28
> show #!1 models
> hide #!5 models
> hide #!2 models
> show #!5 models
> hide #!5 models
> show #!5 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> ui tool show "Fit in Map"
> fitmap #5 inMap #1
Fit map J1770_FE in map emdb35243_ODV using 851116 points
correlation = 0.8483, correlation about mean = 0.2293, overlap = 8e+04
steps = 48, shift = 0.243, angle = 0.0164 degrees
Position of J1770_FE (#5) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.13132850 0.99133890 -0.00006754 -37.26648368
0.99133890 -0.13132851 -0.00003051 66.19760087
-0.00003911 -0.00006295 -1.00000000 760.18993780
Axis -0.75209153 -0.65905867 0.00001272
Axis point 0.00000000 49.43258156 380.09425290
Rotation angle (degrees) 179.99876430
Shift along axis -15.59062842
> fitmap #5 inMap #1
Fit map J1770_FE in map emdb35243_ODV using 851116 points
correlation = 0.8483, correlation about mean = 0.2294, overlap = 8e+04
steps = 36, shift = 0.00413, angle = 0.0029 degrees
Position of J1770_FE (#5) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.13135235 0.99133574 -0.00002496 -37.29061767
0.99133574 -0.13135236 -0.00001744 66.20215683
-0.00002057 -0.00002245 -1.00000000 760.16825748
Axis -0.75201734 -0.65914331 -0.00013191
Axis point 0.00000000 49.44453715 380.08733738
Rotation angle (degrees) 179.99980896
Shift along axis -15.69379233
> volume #1 level 0.3717
> fitmap #5 inMap #1
Fit map J1770_FE in map emdb35243_ODV using 851116 points
correlation = 0.8483, correlation about mean = 0.2294, overlap = 8e+04
steps = 36, shift = 0.0043, angle = 0.000951 degrees
Position of J1770_FE (#5) relative to emdb35243_ODV (#1) coordinates:
Matrix rotation and translation
0.13135135 0.99133588 -0.00003949 -37.28663274
0.99133587 -0.13135136 -0.00002539 66.20350274
-0.00003036 -0.00003581 -1.00000000 760.17965366
Axis -0.75206738 -0.65908623 -0.00004758
Axis point 0.00000000 49.44186881 380.09087758
Rotation angle (degrees) 179.99960320
Shift along axis -15.62792528
> volume #1 level 0.3405
> view front
> volume #5 color #7a81ff
> volume #4 level 0.2677
> volume #5 level 0.1741
> volume #3 level 0.1949
> volume #1 color #d2d2d3
> volume #1 color #7a81ff
> volume #5 color #dfd9fc
> volume #5 color #c2cafd
> volume #5 color #dbd3be
> volume #5 color #d2d2d3
> volume #5 color #d2d2d37f
> view front
> volume #5 color #d2d2d3cb
> volume #5 color #d2d2d3bf
> volume #4 color #c1153c
> view front
> ui mousemode right "clip rotate"
> ui mousemode right clip
> volume #1 level 0.3058
> hide #!1 models
> volume #5 color #d2d2d3
> volume #5 color #7a81ff
> volume #5 color #dbd3be
> volume #5 color #f34d8f
> volume #5 color #c2cafd
> volume #5 color #75ff79
> volume #5 color #c1153c
> volume #5 color #7a81ff
> volume #5 level 0.2135
> volume #5 level 0.22
> volume #1 level 0.3301
> volume #1 color #c1153c
> volume #1 level 0.357
> volume #5 level 0.2296
> volume #2 level 0.3571
> volume #3 level 0.275
> volume #5 level 0.22
> fitmap #2 inMap #5
Fit map emdb43590_BV in map J1770_FE using 1970231 points
correlation = 0.7092, correlation about mean = 0.03558, overlap = 1.518e+05
steps = 132, shift = 5.67, angle = 0.682 degrees
Position of emdb43590_BV (#2) relative to J1770_FE (#5) coordinates:
Matrix rotation and translation
0.99488447 0.10096665 -0.00326011 -145.50060887
0.10099751 -0.99482187 0.01135595 832.26782874
-0.00209666 -0.01162712 -0.99993021 951.49886823
Axis -0.99872025 -0.05055749 0.00134102
Axis point 0.00000000 422.55694258 473.23931095
Rotation angle (degrees) 179.34072539
Shift along axis 104.51300645
> fitmap #2 inMap #5
Fit map emdb43590_BV in map J1770_FE using 1970231 points
correlation = 0.7092, correlation about mean = 0.03558, overlap = 1.518e+05
steps = 48, shift = 0.00365, angle = 0.0012 degrees
Position of emdb43590_BV (#2) relative to J1770_FE (#5) coordinates:
Matrix rotation and translation
0.99488316 0.10097978 -0.00325450 -145.50768201
0.10101054 -0.99482072 0.01134053 832.26735347
-0.00209248 -0.01161124 -0.99993040 951.48602193
Axis -0.99871992 -0.05056405 0.00133857
Axis point 0.00000000 422.55359730 473.23634432
Rotation angle (degrees) 179.34162287
Shift along axis 104.51223978
> select add #2
3 models selected
> ui mousemode right "translate selected models"
> view matrix models
> #2,1,0.002004,-0.0020819,-1.4849,-0.0020281,0.99993,-0.011639,4.0605,0.0020584,0.011643,0.99993,-6.8056
> fitmap #2 inMap #5
Fit map emdb43590_BV in map J1770_FE using 1970231 points
correlation = 0.7093, correlation about mean = 0.03518, overlap = 1.518e+05
steps = 56, shift = 4.96, angle = 0.332 degrees
Position of emdb43590_BV (#2) relative to J1770_FE (#5) coordinates:
Matrix rotation and translation
0.99484759 0.10105423 -0.00814346 -144.38287979
0.10112086 -0.99484008 0.00823324 833.24382317
-0.00726943 -0.00901429 -0.99993295 952.76155498
Axis -0.99871104 -0.05061005 0.00385835
Axis point 0.00000000 422.33880063 474.28921584
Rotation angle (degrees) 179.50525064
Shift along axis 105.70234875
> select subtract #2
Nothing selected
> select add #2
3 models selected
> view matrix models
> #2,0.99997,0.0020761,-0.0072544,4.7579,-0.0021416,0.99996,-0.009031,6.2994,0.0072354,0.0090463,0.99993,-13.222
> fitmap #2 inMap #5
Fit map emdb43590_BV in map J1770_FE using 1970231 points
correlation = 0.7092, correlation about mean = 0.03557, overlap = 1.518e+05
steps = 92, shift = 4.21, angle = 0.327 degrees
Position of emdb43590_BV (#2) relative to J1770_FE (#5) coordinates:
Matrix rotation and translation
0.99488426 0.10096572 -0.00335336 -145.47747429
0.10099761 -0.99482217 0.01132865 832.27857560
-0.00219219 -0.01160938 -0.99993021 951.53886178
Axis -0.99872020 -0.05055728 0.00138827
Axis point 0.00000000 422.55644599 473.26057510
Rotation angle (degrees) 179.34201733
Shift along axis 104.53454580
> view matrix models
> #2,1,0.0019899,-0.0021815,1.6101,-0.0020151,0.99993,-0.011637,7.3811,0.0021581,0.011641,0.99993,-12.102
> select subtract #2
Nothing selected
> ui mousemode right clip
> ui mousemode right "clip rotate"
> ui mousemode right clip
> ui mousemode right "clip rotate"
> ui mousemode right zone
> ui mousemode right clip
> hide #!2 models
> show #!2 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!1 models
> volume #2 level 0.3298
> volume #1 level 0.3739
> show #!1 models
> hide #!5 models
> view front
[Repeated 1 time(s)]
> volume #2 color #cbc9d261
> volume #2 color #cbc9d292
> volume #2 color #cbc9d280
> save /Users/ConstantinePetridis/Desktop/BV_ODV_front.png width 3000 height
> 1873 supersample 4
> name view diagonal
"diagonal": invalid atom specifier
> view name diagonal
> save /Users/ConstantinePetridis/Desktop/BV_ODV_diag.png width 3000 height
> 1873 supersample 4
> view name top
> save /Users/ConstantinePetridis/Desktop/BV_ODV_top.png width 3000 height
> 1873 supersample 4
> view front
> save /Users/ConstantinePetridis/Desktop/BV_ODV_slice.png width 3000 height
> 1873 supersample 4
> lighting gentle
> lighting soft
> save /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs includeMaps true
> volume #1 level 0.3635
> volume #1 level 0.369
> volume #1 level 0.368
> volume #1 level 0.367
> volume #1 level 0.366
> volume #1 level 0.365
> volume #1 level 0.363
> volume #1 level 0.364
> volume #1 level 0.365
> save /Users/ConstantinePetridis/Desktop/BV_ODV_slice.png width 3000 height
> 1873 supersample 4
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> volume #1 level 0.369
> volume #1 level 0.37
> volume #1 level 0.371
> volume #1 level 0.37
> volume #1 level 0.372
> volume #1 level 0.37
> volume #1 level 0.371
> volume #1 level 0.37
> volume #1 level 0.371
> volume #1 level 0.37
> volume #1 level 0.371
> volume #1 level 0.37
> save /Users/ConstantinePetridis/Desktop/BV_ODV_slice.png width 3000 height
> 1873 supersample 4
> show #!5 models
> hide #!2 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!2 models
> color #2 #cbc9d2ff models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> volume #5 level 0.218
> ui tool show "Hide Dust"
> surface dust #2 size 1.41
> surface dust #5 size 13.13
> surface dust #5 size 12.94
> surface dust #5 size 14.56
[Repeated 1 time(s)]
> surface dust #5 size 13.84
> surface dust #5 size 24.07
> surface dust #1 size 58.58
> surface dust #2 size 1.41
> surface dust #2 size 1.53
> surface dust #2 size 7.02
> volume #2 color #cbc9d280
> surface dust #2 size 7.9
> surface dust #2 size 13.04
> volume #2 color #cbc9d2
> surface dust #1 size 58.26
> surface dust #1 size 23.5
[Repeated 1 time(s)]
> volume #2 color #6f7073
> undo
> volume #2 color #d2d2d3
> volume #2 color #d2d2d37f
> volume #2 level 0.328
> volume #2 level 0.329
> volume #2 level 0.33
> volume #2 level 0.329
> surface dust #1 size 23.91
> surface dust #2 size 12.41
> surface dust #2 size 13.27
> volume #2 level 0.3136
> volume #2 level 0.315
> surface dust #2 size 13.71
> surface dust #2 size 7.26
> surface dust #1 size 22.74
> surface dust #1 size 24.72
> volume #5 level 0.2003
> volume #5 level 0.2042
> volume #5 level 0.2022
> save /Users/ConstantinePetridis/Desktop/BV_ODV_slice2.png width 3000 height
> 1873 supersample 4
> name view slice
"slice": invalid atom specifier
> view name slice
[Repeated 1 time(s)]
> volume #2 color #d2d2d3
> view name slice
[Repeated 1 time(s)]
> volume #5 level 0.203
> volume #5 level 0.205
> volume #5 level 0.215
> volume #5 level 0.213
> surface dust #5 size 11.7
> surface dust #5 size 11.51
> surface dust #5 size 15.31
> surface dust #5 size 15.57
> surface dust #5 size 22.14
> surface dust #5 size 21.05
> surface dust #5 size 14.56
> surface dust #5 size 15
> surface dust #5 size 15.5
[Repeated 1 time(s)]
> volume #5 level 0.215
> volume #5 level 0.22
> volume #5 level 0.215
> volume #5 level 0.214
> volume #5 level 0.21
> volume #5 level 0.212
> volume #2 color #d2d2d382
> volume #2 color #d2d2d381
> volume #2 color #d2d2d380
> volume #5 color #7a81ff82
> volume #5 color #7a81ff80
> volume #5 color #7a81ff
> volume #5 color #7d82ff
> volume #5 color #9096ff
> volume #5 color #8b90ff
> volume #5 color #8186ee
> volume #5 color #928cee
> volume #5 color #8687ee
> volume #5 color #7a81ff
> volume #5 color #8687ee
> volume #5 color #7a81ff
> volume #5 color #8687ee
> volume #5 color #7a81ff
> volume #5 color #8687ee
> volume #5 color #8d8efd
> volume #5 color #8c8dfc
> save /Users/ConstantinePetridis/Desktop/FE_slice.png width 3000 height 1873
> supersample 4
> view front
> save /Users/ConstantinePetridis/Desktop/FE_front.png width 3000 height 1873
> supersample 4
> view side
Expected an objects specifier or a view name or a keyword
> view top
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> save /Users/ConstantinePetridis/Desktop/FE_top.png width 3000 height 1873
> supersample 4
> view diagonal
[Repeated 1 time(s)]
> save /Users/ConstantinePetridis/Desktop/FE_diag.png width 3000 height 1873
> supersample 4
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1558_003_volume_map.mrc
Opened cryosparc_P23_J1558_003_volume_map.mrc as #6, grid size 256,256,256,
pixel 3.33, shown at level 0.217, step 1, values float32
> hide #!5 models
> volume #6 level 0.3811
> volume #6 level 0.3328
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1556_003_volume_map.mrc
Opened cryosparc_P23_J1556_003_volume_map.mrc as #7, grid size 256,256,256,
pixel 3.33, shown at level 0.21, step 1, values float32
> volume #7 level 0.4989
> show #!5 models
> select add #7
3 models selected
> ui mousemode right "translate selected models"
> view matrix models #7,1,0,0,-16.351,0,1,0,47.951,0,0,1,138.25
> view matrix models #7,1,0,0,29.518,0,1,0,46.948,0,0,1,111.17
> view matrix models #7,1,0,0,25.184,0,1,0,58.062,0,0,1,121.54
> view matrix models #7,1,0,0,26.356,0,1,0,61.724,0,0,1,120.42
> volume #7 level 1.549
> view matrix models #7,1,0,0,-5.8723,0,1,0,212.92,0,0,1,115.91
> view matrix models #7,1,0,0,21.885,0,1,0,66.685,0,0,1,255.9
> view matrix models #7,1,0,0,51.063,0,1,0,63.802,0,0,1,118.77
> view matrix models #7,1,0,0,62.627,0,1,0,64.199,0,0,1,115.71
> volume #5 level 0.145
> show #!2 models
> volume #2 level 0.192
> volume #5 level 0.212
> view matrix models #7,1,0,0,62.623,0,1,0,64.137,0,0,1,124.05
> volume #7 level 1.238
> volume #2 level 0.2791
> volume #2 level 0.2433
> volume #2 color #d2d2d3
> select subtract #7
Nothing selected
> show #!5 models
> hide #!2 models
> close #6-7
> view slice
> ui mousemode right clip
> open /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1772_map_locres.mrc
Opened cryosparc_P23_J1772_map_locres.mrc as #6, grid size 360,360,360, pixel
2.19, shown at level 15.3, step 2, values float32
> ui tool show "Surface Color"
> open /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1772_map_locres.mrc
Opened cryosparc_P23_J1772_map_locres.mrc as #7, grid size 360,360,360, pixel
2.19, shown at level 15.3, step 2, values float32
> close #7
> ui tool show "Color Zone"
> volume #6 level 34.88
> color sample #5.1 map #6 palette #ff0000:#ffffff:#0000ff
Map values for surface "surface": minimum 0, mean 3.268, maximum 84.67
Map values for surface "cap front": minimum 0, mean 3.597, maximum 75.98
> color sample #5.1 map #6 palette #ff0000:#ffffff:#0000ff
Map values for surface "surface": minimum 0, mean 3.268, maximum 84.67
Map values for surface "cap front": minimum 0, mean 3.597, maximum 75.98
> color sample #5.1 map #6 palette #0000ff:#00ff00:#ff0000
Map values for surface "surface": minimum 0, mean 3.268, maximum 84.67
Map values for surface "cap front": minimum 0, mean 3.597, maximum 75.98
> color sample #5.1 map #6 palette #0000ff:#00ff00:#ff0000
Map values for surface "surface": minimum 0, mean 3.268, maximum 84.67
Map values for surface "cap front": minimum 0, mean 3.597, maximum 75.98
> color sample #5.1 map #6 palette #0000ff:#00ff00:#ff0000
Map values for surface "surface": minimum 0, mean 3.268, maximum 84.67
Map values for surface "cap front": minimum 0, mean 3.597, maximum 75.98
> color sample #5.1 map #6 palette #0000ff:#00ff00:#ff0000
Map values for surface "surface": minimum 0, mean 3.268, maximum 84.67
Map values for surface "cap front": minimum 0, mean 3.597, maximum 75.98
> color sample #5.1 map #6 palette 4,#0000ff:8,#00ff00:12,#ff0000
Map values for surface "surface": minimum 0, mean 3.268, maximum 84.67
Map values for surface "cap front": minimum 0, mean 3.597, maximum 75.98
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> volume #6 level 13.26
> select add #6
3 models selected
> ui mousemode right "translate selected models"
> view matrix models #6,1,0,0,40.565,0,1,0,120.88,0,0,1,-18.957
> view matrix models #6,1,0,0,41.114,0,1,0,127.8,0,0,1,-119.02
> volume #6 level 8.559
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.79891,-0.6006,-0.0319,370.49,-0.60062,-0.79947,0.010071,1069.1,-0.031552,0.011114,-0.99944,738.08
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.79891,-0.6006,-0.0319,372.71,-0.60062,-0.79947,0.010071,1065,-0.031552,0.011114,-0.99944,940.36
> view matrix models
> #6,0.79891,-0.6006,-0.0319,414.56,-0.60062,-0.79947,0.010071,1058.5,-0.031552,0.011114,-0.99944,943.96
> view matrix models
> #6,0.79891,-0.6006,-0.0319,407.83,-0.60062,-0.79947,0.010071,1047.6,-0.031552,0.011114,-0.99944,923.68
> color sample #5.1 map #6 palette 4,#0000ff:8,#00ff00:12,#ff0000
Map values for surface "surface": minimum 0, mean 5.765, maximum 74.22
Map values for surface "cap front": minimum 0, mean 6.344, maximum 14.45
> show #!6 models
> select add #6
3 models selected
> select subtract #6
Nothing selected
> volume #6 level 11.07
> ui tool show "Fit in Map"
> fitmap #6 inMap #5
Fit map cryosparc_P23_J1772_map_locres.mrc in map J1770_FE using 235274 points
correlation = 0.622, correlation about mean = -0.02491, overlap = 3.607e+05
steps = 176, shift = 31.5, angle = 3.74 degrees
Position of cryosparc_P23_J1772_map_locres.mrc (#6) relative to J1770_FE (#5)
coordinates:
Matrix rotation and translation
0.72829231 -0.67899329 -0.09251157 390.10224659
0.67932068 0.73310920 -0.03277637 -151.45118045
0.09007602 -0.03897424 0.99517199 -23.78717197
Axis -0.00452220 -0.13322261 0.99107582
Axis point 388.57482759 419.00286192 0.00000000
Rotation angle (degrees) 43.25704092
Shift along axis -5.16228847
> volume #6 level 5.917
> select add #6
3 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.70474,-0.70639,-0.06603,498.29,-0.70626,-0.70735,0.029181,1038.5,-0.067319,0.026069,-0.99739,960.59
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.7101,-0.70395,0.014309,461.1,-0.70409,-0.71001,0.01201,1046,0.0017056,-0.018603,-0.99983,952.03
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.7101,-0.70395,0.014309,466.45,-0.70409,-0.71001,0.01201,1044.9,0.0017056,-0.018603,-0.99983,952.74
> view matrix models
> #6,0.7101,-0.70395,0.014309,469.04,-0.70409,-0.71001,0.01201,1051.1,0.0017056,-0.018603,-0.99983,951.55
> view matrix models
> #6,0.7101,-0.70395,0.014309,476.39,-0.70409,-0.71001,0.01201,1047.6,0.0017056,-0.018603,-0.99983,951.57
> fitmap #6 inMap #5
Fit map cryosparc_P23_J1772_map_locres.mrc in map J1770_FE using 713538 points
correlation = 0.42, correlation about mean = -0.02124, overlap = 6.456e+05
steps = 96, shift = 10.1, angle = 0.907 degrees
Position of cryosparc_P23_J1772_map_locres.mrc (#6) relative to J1770_FE (#5)
coordinates:
Matrix rotation and translation
0.62551415 -0.78013599 0.01094819 439.41706404
0.78021115 0.62548012 -0.00671941 -153.86127727
-0.00160582 0.01274498 0.99991748 -2.24018364
Axis 0.01247302 0.00804476 0.99988985
Axis point 380.02074921 380.80499582 0.00000000
Rotation angle (degrees) 51.28434410
Shift along axis 2.00314369
> color sample #5.1 map #6 palette 4,#0000ff:8,#00ff00:12,#ff0000
Map values for surface "surface": minimum 0, mean 6.769, maximum 84.46
Map values for surface "cap front": minimum 4.775, mean 6.84, maximum 14.92
> color sample #5.1 map #6 palette #0000ff:#00ff00:#ff0000
Map values for surface "surface": minimum 0, mean 6.769, maximum 84.46
Map values for surface "cap front": minimum 4.775, mean 6.84, maximum 14.92
> color sample #5.1 map #6 palette 3,#0000ff:6,#00ff00:9,#ff0000
Map values for surface "surface": minimum 0, mean 6.769, maximum 84.46
Map values for surface "cap front": minimum 4.775, mean 6.84, maximum 14.92
> fitmap #6 inMap #5
Fit map cryosparc_P23_J1772_map_locres.mrc in map J1770_FE using 713538 points
correlation = 0.42, correlation about mean = -0.02125, overlap = 6.456e+05
steps = 40, shift = 0.194, angle = 0.0295 degrees
Position of cryosparc_P23_J1772_map_locres.mrc (#6) relative to J1770_FE (#5)
coordinates:
Matrix rotation and translation
0.62537365 -0.78024819 0.01097844 439.53472662
0.78032286 0.62534576 -0.00623573 -153.90759639
-0.00199990 0.01246638 0.99992028 -1.94177383
Axis 0.01198287 0.00831552 0.99989363
Axis point 380.09000393 380.79996395 0.00000000
Rotation angle (degrees) 51.29433191
Shift along axis 2.04549844
> volume #6 level 11.86
> view matrix models
> #6,0.69955,-0.71451,0.010273,486.54,-0.71458,-0.69951,0.0073239,1048.3,0.0019532,-0.012465,-0.99992,942.21
> fitmap #6 inMap #5
Fit map cryosparc_P23_J1772_map_locres.mrc in map J1770_FE using 194529 points
correlation = 0.6868, correlation about mean = -0.005782, overlap = 3.239e+05
steps = 176, shift = 6.12, angle = 3.47 degrees
Position of cryosparc_P23_J1772_map_locres.mrc (#6) relative to J1770_FE (#5)
coordinates:
Matrix rotation and translation
0.60157471 -0.79878007 -0.00763050 470.20395732
0.79733311 0.60101206 -0.05517589 -133.26339412
0.04865942 0.02710837 0.99844748 -32.85683310
Axis 0.05145263 -0.03519828 0.99805496
Axis point 369.71797118 404.49193271 0.00000000
Rotation angle (degrees) 53.09305594
Shift along axis -3.90905469
> view matrix models
> #6,0.67755,-0.73536,-0.013089,520.23,-0.73386,-0.67713,0.054182,1032.8,-0.048706,-0.027105,-0.99845,972.09
> view matrix models
> #6,0.67755,-0.73536,-0.013089,519.12,-0.73386,-0.67713,0.054182,1029.5,-0.048706,-0.027105,-0.99845,972.47
> color sample #5.1 map #6 palette 3,#0000ff:6,#00ff00:9,#ff0000
Map values for surface "surface": minimum 0, mean 6.738, maximum 83.65
Map values for surface "cap front": minimum 0, mean 6.805, maximum 12.79
> volume #6 level 7.105
> view matrix models
> #6,0.67755,-0.73536,-0.013089,514.54,-0.73386,-0.67713,0.054182,1021.4,-0.048706,-0.027105,-0.99845,972.32
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.674,-0.73835,-0.023878,521.69,-0.73736,-0.67436,0.039227,1028,-0.045066,-0.0088322,-0.99894,963.9
> undo
> view matrix models
> #6,0.67655,-0.73609,-0.021086,518.61,-0.735,-0.67676,0.042162,1026.8,-0.045305,-0.013027,-0.99889,965.63
> view matrix models
> #6,0.67863,-0.73447,0.0027947,507.02,-0.73431,-0.6784,0.023716,1035,-0.015523,-0.018147,-0.99971,956.26
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.67863,-0.73447,0.0027947,508.2,-0.73431,-0.6784,0.023716,1038.3,-0.015523,-0.018147,-0.99971,956.19
> fitmap #6 inMap #5
Fit map cryosparc_P23_J1772_map_locres.mrc in map J1770_FE using 556136 points
correlation = 0.4654, correlation about mean = 0.004979, overlap = 5.607e+05
steps = 192, shift = 9.81, angle = 10.6 degrees
Position of cryosparc_P23_J1772_map_locres.mrc (#6) relative to J1770_FE (#5)
coordinates:
Matrix rotation and translation
0.44852051 -0.89365997 -0.01418363 570.85480520
0.89242120 0.44865831 -0.04785486 -120.70874369
0.04912958 0.00880612 0.99875358 -24.87285560
Axis 0.03168780 -0.03540807 0.99887044
Axis point 383.75107879 402.05737701 0.00000000
Rotation angle (degrees) 63.38672762
Shift along axis -2.48156606
> undo
> color sample #5.1 map #6 palette 3,#0000ff:6,#00ff00:9,#ff0000
Map values for surface "surface": minimum 0, mean 6.734, maximum 83.39
Map values for surface "cap front": minimum 3.706, mean 6.824, maximum 13.41
> ui mousemode right clip
> color sample #5.1 map #6 palette 3,#0000ff:6,#00ff00:9,#ff0000
Map values for surface "surface": minimum 0, mean 6.734, maximum 83.39
Map values for surface "cap front": minimum 4.775, mean 6.985, maximum 41.66
> volume #6 level 11.2
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.67863,-0.73447,0.0027947,509.23,-0.73431,-0.6784,0.023716,1035.7,-0.015523,-0.018147,-0.99971,956.19
> volume #6 level 7.105
> color sample #5.1 map #6 palette 3,#0000ff:6,#00ff00:9,#ff0000
Map values for surface "surface": minimum 0, mean 6.704, maximum 83.63
> ui mousemode right clip
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.7012,-0.71296,0.00026846,492.93,-0.71283,-0.70106,0.019856,1037.8,-0.013968,-0.014114,-0.9998,954.02
> color sample #5.1 map #6 palette 3,#0000ff:6,#00ff00:9,#ff0000
Map values for surface "surface": minimum 0, mean 6.687, maximum 83.62
Map values for surface "cap front": minimum 4.775, mean 5.637, maximum 9.86
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.7012,-0.71296,0.00026846,498.59,-0.71283,-0.70106,0.019856,1042.5,-0.013968,-0.014114,-0.9998,954.59
> ui mousemode right clip
> color sample #5.1 map #6 palette 3,#0000ff:6,#00ff00:9,#ff0000
Map values for surface "surface": minimum 0, mean 6.63, maximum 83.86
> color sample #5.1 map #6 palette 3,#0000ff:6,#00ff00:9,#ff0000
Map values for surface "surface": minimum 0, mean 6.63, maximum 83.86
Map values for surface "cap front": minimum 4.775, mean 6.806, maximum 13.48
> color sample #5.1 map #6 palette 4,#0000ff:6,#00ff00:9,#ff0000
Map values for surface "surface": minimum 0, mean 6.63, maximum 83.86
Map values for surface "cap front": minimum 4.775, mean 6.806, maximum 13.48
> color sample #5.1 map #6 palette 4,#0000ff:7,#00ff00:10,#ff0000
Map values for surface "surface": minimum 0, mean 6.63, maximum 83.86
Map values for surface "cap front": minimum 4.775, mean 6.806, maximum 13.48
> color sample #5.1 map #6 palette 5,#0000ff:8,#00ff00:11,#ff0000
Map values for surface "surface": minimum 0, mean 6.63, maximum 83.86
Map values for surface "cap front": minimum 4.775, mean 6.806, maximum 13.48
> ui mousemode right "rotate selected models"
> ui mousemode right clip
> fitmap #6 inMap #5
Fit map cryosparc_P23_J1772_map_locres.mrc in map J1770_FE using 556136 points
correlation = 0.4654, correlation about mean = 0.004986, overlap = 5.607e+05
steps = 232, shift = 10.9, angle = 12.3 degrees
Position of cryosparc_P23_J1772_map_locres.mrc (#6) relative to J1770_FE (#5)
coordinates:
Matrix rotation and translation
0.44843477 -0.89370215 -0.01423684 570.92176745
0.89245986 0.44857475 -0.04791714 -120.66744478
0.04920994 0.00878190 0.99874983 -24.85908666
Axis 0.03170755 -0.03548105 0.99886722
Axis point 383.73998016 402.08218830 0.00000000
Rotation angle (degrees) 63.39227213
Shift along axis -2.44698898
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.53458,-0.84491,-0.018944,623.91,-0.84368,-0.53484,0.046304,1016.7,-0.049255,-0.0087703,-0.99875,965.32
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.3124,-0.94994,0.0049256,742.68,-0.9477,-0.3113,0.070378,959.43,-0.065321,-0.026654,-0.99751,978.17
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.3124,-0.94994,0.0049256,742.74,-0.9477,-0.3113,0.070378,959.02,-0.065321,-0.026654,-0.99751,978.19
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.29215,-0.95632,0.010024,751.07,-0.95409,-0.29071,0.072135,952.67,-0.06607,-0.030638,-0.99734,979.99
> view matrix models
> #6,0.31166,-0.95014,-0.010037,749.47,-0.94798,-0.31163,0.065024,961.53,-0.06491,-0.010751,-0.99783,971.9
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.31166,-0.95014,-0.010037,750.23,-0.94798,-0.31163,0.065024,964.57,-0.06491,-0.010751,-0.99783,969.55
> color sample #5.1 map #6 palette 5,#0000ff:8,#00ff00:11,#ff0000
Map values for surface "surface": minimum 0, mean 6.704, maximum 81.87
Map values for surface "cap front": minimum 0.1064, mean 5.961, maximum 10.3
> ui mousemode right clip
> color sample #5.1 map #6 palette 5,#0000ff:8,#00ff00:11,#ff0000
Map values for surface "surface": minimum 0, mean 6.704, maximum 81.87
Map values for surface "cap front": minimum 2.423, mean 6.735, maximum 13.35
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.31249,-0.94992,-0.00018017,745.63,-0.94992,-0.31248,-0.0036285,994.83,0.0033905,0.001305,-0.99999,938.81
> view matrix models
> #6,0.31248,-0.94989,-0.0084239,749.12,-0.9499,-0.31241,-0.0092514,997.18,0.0061561,0.010893,-0.99992,933.91
> color sample #5.1 map #6 palette 5,#0000ff:8,#00ff00:11,#ff0000
Map values for surface "surface": minimum 0, mean 6.609, maximum 84.34
> ui mousemode right clip
> color sample #5.1 map #6 palette 5,#0000ff:8,#00ff00:11,#ff0000
Map values for surface "surface": minimum 0, mean 6.609, maximum 84.34
Map values for surface "cap front": minimum 4.775, mean 6.786, maximum 13.29
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.31248,-0.94989,-0.0084239,749.68,-0.9499,-0.31241,-0.0092514,996.07,0.0061561,0.010893,-0.99992,934.92
> color sample #5.1 map #6 palette 5,#0000ff:8,#00ff00:11,#ff0000
Map values for surface "surface": minimum 0, mean 6.608, maximum 84.13
Map values for surface "cap front": minimum 4.775, mean 6.786, maximum 13.43
> color sample #5.1 map #6 palette 5,#0000ff:8,#00ff00:11,#ff0000
Map values for surface "surface": minimum 0, mean 6.608, maximum 84.13
Map values for surface "cap front": minimum 4.775, mean 6.786, maximum 13.43
> color sample #5.1 map #6 palette 4,#0000ff:8,#00ff00:11,#ff0000
Map values for surface "surface": minimum 0, mean 6.608, maximum 84.13
Map values for surface "cap front": minimum 4.775, mean 6.786, maximum 13.43
> color sample #5.1 map #6 palette
> 3,#0000ff:5,#00ffff:7,#00ff00:9,#ffff00:11,#ff0000
Map values for surface "surface": minimum 0, mean 6.608, maximum 84.13
Map values for surface "cap front": minimum 4.775, mean 6.786, maximum 13.43
> color sample #5.1 map #6 palette
> 4,#0000ff:6,#00ffff:8,#00ff00:10,#ffff00:12,#ff0000
Map values for surface "surface": minimum 0, mean 6.608, maximum 84.13
Map values for surface "cap front": minimum 4.775, mean 6.786, maximum 13.43
> view slice
> view matrix models
> #6,0.31248,-0.94989,-0.0084239,749.68,-0.9499,-0.31241,-0.0092514,995.13,0.0061561,0.010893,-0.99992,938.88
> color sample #5.1 map #6 palette
> 4,#0000ff:6,#00ffff:8,#00ff00:10,#ffff00:12,#ff0000
Map values for surface "surface": minimum 0, mean 6.65, maximum 83.6
Map values for surface "cap front": minimum 4.775, mean 6.723, maximum 12.76
> view slice
> key rainbow :4 :6 :8 :10 :12 showTool true
> ui mousemode right "color key"
> ui mousemode right "translate selected models"
> undo
> view slice
> undo
> view slice
> color sample #5.1 map #6 palette
> 5,#0000ff:6,#00ffff:8,#00ff00:10,#ffff00:12,#ff0000
Map values for surface "surface": minimum 0, mean 6.65, maximum 83.6
Map values for surface "cap front": minimum 4.775, mean 6.723, maximum 12.76
> color sample #5.1 map #6 palette
> 4,#0000ff:5,#00ffff:8,#00ff00:10,#ffff00:12,#ff0000
Map values for surface "surface": minimum 0, mean 6.65, maximum 83.6
Map values for surface "cap front": minimum 4.775, mean 6.723, maximum 12.76
> color sample #5.1 map #6 palette
> 4,#0000ff:5,#00ffff:8,#00ff00:10,#ffff00:12,#ff0000
Map values for surface "surface": minimum 0, mean 6.65, maximum 83.6
Map values for surface "cap front": minimum 4.775, mean 6.723, maximum 12.76
> color sample #5.1 map #6 palette
> 5,#0000ff:7,#00ffff:9,#00ff00:11,#ffff00:13,#ff0000
Map values for surface "surface": minimum 0, mean 6.65, maximum 83.6
Map values for surface "cap front": minimum 4.775, mean 6.723, maximum 12.76
> color sample #5.1 map #6 palette
> 4,#0000ff:6,#00ffff:8,#00ff00:10,#ffff00:12,#ff0000
Map values for surface "surface": minimum 0, mean 6.65, maximum 83.6
Map values for surface "cap front": minimum 4.775, mean 6.723, maximum 12.76
> save /Users/ConstantinePetridis/Desktop/localres.png width 3000 height 2655
> supersample 4
> view slice
> ui mousemode right rotate
> save /Users/ConstantinePetridis/Desktop/localres.png width 3000 height 2655
> supersample 4
> close #7
> close #6
> color #5 #8c8dfcff
> open /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1772_map_locres.mrc
Opened cryosparc_P23_J1772_map_locres.mrc as #6, grid size 360,360,360, pixel
2.19, shown at level 15.3, step 2, values float32
> volume #6 level 4.338
> view slice
> select add #6
3 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.73792,-0.65748,-0.15229,426.93,-0.65684,-0.7515,0.06169,922.6,-0.15501,0.054508,-0.98641,883.06
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.73792,-0.65748,-0.15229,481.25,-0.65684,-0.7515,0.06169,1044.3,-0.15501,0.054508,-0.98641,976.95
> view matrix models
> #6,0.73792,-0.65748,-0.15229,521.56,-0.65684,-0.7515,0.06169,1039.7,-0.15501,0.054508,-0.98641,983.22
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.77527,-0.63157,0.0082957,428.45,-0.63144,-0.77464,0.034901,1050.2,-0.015616,-0.032296,-0.99936,968
> view matrix models
> #6,0.57957,-0.8149,0.005019,579.17,-0.81492,-0.57955,0.0047301,1058.4,-0.0009458,-0.0068316,-0.99998,952.45
> view matrix models
> #6,0.56528,-0.82392,0.040091,573.46,-0.82321,-0.56657,-0.036471,1074,0.052763,-0.012386,-0.99853,932.87
> view matrix models
> #6,0.59292,-0.80379,0.048658,551,-0.80287,-0.59474,-0.041117,1079.1,0.061988,-0.014687,-0.99797,929.9
> view matrix models
> #6,0.64649,-0.7621,0.035332,519.13,-0.75938,-0.64726,-0.066303,1093.4,0.073399,0.016034,-0.99717,912.96
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.64649,-0.7621,0.035332,530.48,-0.75938,-0.64726,-0.066303,1094.8,0.073399,0.016034,-0.99717,896.38
> ui mousemode right clip
> volume #6 level 8.563
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.64649,-0.7621,0.035332,526.11,-0.75938,-0.64726,-0.066303,1077.4,0.073399,0.016034,-0.99717,897.09
> view matrix models
> #6,0.64649,-0.7621,0.035332,519.94,-0.75938,-0.64726,-0.066303,1083,0.073399,0.016034,-0.99717,897.33
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.64806,-0.75633,-0.089372,570,-0.75997,-0.64987,-0.011,1060.8,-0.049761,0.075049,-0.99594,922.08
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.64806,-0.75633,-0.089372,576.4,-0.75997,-0.64987,-0.011,1054.9,-0.049761,0.075049,-0.99594,921.37
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.6425,-0.75609,-0.12456,593.44,-0.75795,-0.65097,0.041827,1032.1,-0.11271,0.067537,-0.99133,947.17
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.6425,-0.75609,-0.12456,593.72,-0.75795,-0.65097,0.041827,1031.3,-0.11271,0.067537,-0.99133,947.14
> volume #6 level 6.847
> view matrix models
> #6,0.6425,-0.75609,-0.12456,592.38,-0.75795,-0.65097,0.041827,1030.9,-0.11271,0.067537,-0.99133,947.42
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.64591,-0.75866,-0.085075,575.28,-0.75837,-0.65043,0.042488,1030.5,-0.087569,0.037075,-0.99547,951.28
> view matrix models
> #6,0.72579,-0.68433,-0.070145,508.19,-0.68645,-0.72712,-0.0089347,1054.3,-0.04489,0.054635,-0.9975,928.4
> view matrix models
> #6,0.72509,-0.685,-0.070781,509,-0.686,-0.72748,0.012928,1044.9,-0.060348,0.039182,-0.99741,940.54
> view matrix models
> #6,0.66079,-0.74786,-0.063795,556.13,-0.74283,-0.66378,0.087132,1010.7,-0.10751,-0.010187,-0.99415,977.19
> volume #6 level 8.827
> transparency #6
Missing or invalid "percent" argument: Expected a number
> transparency #6 50
> volume #6 level 8.167
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.66079,-0.74786,-0.063795,560.77,-0.74283,-0.66378,0.087132,1001.6,-0.10751,-0.010187,-0.99415,976.52
> view matrix models
> #6,0.66079,-0.74786,-0.063795,568.86,-0.74283,-0.66378,0.087132,1002.1,-0.10751,-0.010187,-0.99415,976.76
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.60104,-0.76193,-0.24127,673.3,-0.7084,-0.64766,0.28054,900.01,-0.37001,0.0022994,-0.92902,1047.6
> view matrix models
> #6,0.6286,-0.74356,-0.22801,649.58,-0.74019,-0.66195,0.11807,987.15,-0.23872,0.094554,-0.96647,975.44
> view matrix models
> #6,0.65931,-0.74084,-0.12833,594.08,-0.74854,-0.66281,-0.019335,1049.1,-0.070734,0.10881,-0.99154,914.29
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.65931,-0.74084,-0.12833,584.52,-0.74854,-0.66281,-0.019335,1056.8,-0.070734,0.10881,-0.99154,917.83
> view matrix models
> #6,0.65931,-0.74084,-0.12833,584.07,-0.74854,-0.66281,-0.019335,1055.8,-0.070734,0.10881,-0.99154,917.84
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.65065,-0.75059,-0.1152,585.75,-0.75,-0.65894,0.05741,1022.3,-0.119,0.049046,-0.99168,960.46
> view matrix models
> #6,0.66794,-0.73266,-0.1306,578.41,-0.73646,-0.67599,0.025754,1037.1,-0.10715,0.078978,-0.9911,943.76
> view matrix models
> #6,0.67045,-0.73938,-0.061804,550.86,-0.74121,-0.67117,-0.011271,1052.8,-0.033148,0.053367,-0.99802,927.63
> view matrix models
> #6,0.67828,-0.73209,-0.063063,545.43,-0.73394,-0.67915,-0.0098613,1052.5,-0.035609,0.052973,-0.99796,928.73
> view matrix models
> #6,0.66893,-0.74053,-0.064409,553.01,-0.74248,-0.66978,-0.010479,1052.4,-0.03538,0.054832,-0.99787,927.87
> volume #6 level 7.507
> ui mousemode right clip
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.66911,-0.74205,-0.04069,543.47,-0.74285,-0.66942,-0.0076748,1051.2,-0.021544,0.035362,-0.99914,930.63
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.66911,-0.74205,-0.04069,536.2,-0.74285,-0.66942,-0.0076748,1050.5,-0.021544,0.035362,-0.99914,931.48
> view matrix models
> #6,0.66911,-0.74205,-0.04069,533.53,-0.74285,-0.66942,-0.0076748,1051.2,-0.021544,0.035362,-0.99914,931.93
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.66873,-0.74274,-0.03382,531.04,-0.74335,-0.66884,-0.0094975,1051.9,-0.015566,0.031491,-0.99938,931.21
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.66873,-0.74274,-0.03382,532.76,-0.74335,-0.66884,-0.0094975,1051.4,-0.015566,0.031491,-0.99938,931.66
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.66744,-0.74437,-0.020672,528.32,-0.74465,-0.66731,-0.013922,1053.2,-0.0034315,0.024686,-0.99969,929.69
> ui mousemode right "translate selected models"
> view matrix models
> #6,0.66744,-0.74437,-0.020672,534.92,-0.74465,-0.66731,-0.013922,1054.9,-0.0034315,0.024686,-0.99969,929.71
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.66683,-0.74518,0.0062522,524.05,-0.74518,-0.66686,-0.0035196,1050.6,0.006792,-0.002312,-0.99997,936.44
> ui tool show "Surface Color"
> color sample #5.1 map #6 palette #0000ff:#00ffff:#00ff00:#ffff00:#ff0000
Map values for surface "surface": minimum 0, mean 6.678, maximum 84.54
> hide #!6 models
> select subtract #6
Nothing selected
> view slice
> color sample #5.1 map #6 palette
> 4,#0000ff:6,#00ffff:8,#00ff00:10,#ffff00:12,#ff0000
Map values for surface "surface": minimum 0, mean 6.678, maximum 84.54
Map values for surface "cap front": minimum 4.775, mean 6.72, maximum 12.62
> view slice
> ui mousemode right rotate
> save /Users/ConstantinePetridis/Desktop/localres.png width 3000 height 2655
> supersample 4
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1586_003_volume_map.mrc
Opened cryosparc_P23_J1586_003_volume_map.mrc as #7, grid size 256,256,256,
pixel 3.33, shown at level 0.585, step 1, values float32
> hide #!5 models
> volume #7 level 0.7706
> ui mousemode right clip
> open
> /Users/ConstantinePetridis/Downloads/cryosparc_P23_J1577_001_volume_map.mrc
Opened cryosparc_P23_J1577_001_volume_map.mrc as #8, grid size 636,636,636,
pixel 1.34, shown at level 0.041, step 4, values float32
> volume #8 level 0.072
> volume #8 step 1
> volume #8 step 2
> volume #8 step 4
> volume #8 level 0.06093
> ui mousemode right rotate
> close #7-8
> show #!3 models
> show #!2 models
> view front
> color #3 #8c8dfcff models
> color #3 #8c8dfc80 models
> hide #!3 models
> show #!3 models
> hide #!2 models
> show #!2 models
> volume #2 level 0.3359
> volume #3 level 0.2475
> volume #2 level 0.1906
> volume #2 level 0.1716
> volume #2 level 0.336
> volume #3 level 0.212
> volume #2 level 0.3002
> ui tool show "Hide Dust"
> surface dust #2 size 1.41
> surface dust #3 size 14.2
> surface dust #3 size 14.43
> surface dust #3 size 65.43
> hide #!2 models
> surface dust #3 size 68.1
> surface dust #3 size 8.53
> ui mousemode right clip
> surface dust #3 size 8.64
> surface dust #3 size 2.37
> surface dust #3 size 6
> surface dust #3 size 63
[Repeated 1 time(s)]
> surface dust #3 size 6
> surface dust #3 size 60
[Repeated 1 time(s)]
> show #!2 models
> view front
> volume #3 color #8687ee
> volume #3 color #8c8dfc
> volume #3 color #7a81ff
> volume #3 color #8687ee
> volume #3 color #8c8dfc
> volume #3 color #8c8dfc80
> volume #3 color #8c8dfc8c
> volume #2 level 0.2462
> volume #2 level 0.24
> volume #2 level 0.26
> volume #2 level 0.2125
> volume #2 level 0.2773
> volume #2 level 0.2902
> volume #3 level 0.21
> volume #3 level 0.208
> surface dust #2 size 3.56
> surface dust #2 size 3.42
> surface dust #2 size 8.43
> surface dust #3 size 6
> surface dust #3 size 62
[Repeated 2 time(s)]
> surface dust #3 size 6
> surface dust #3 size 64
[Repeated 1 time(s)]
> surface dust #3 size 6
> surface dust #3 size 62
[Repeated 1 time(s)]
> surface dust #3 size 67.21
> surface dust #3 size 57.94
> surface dust #3 size 6
> surface dust #3 size 60
[Repeated 1 time(s)]
> view front
> volume #3 level 0.212
> volume #3 level 0.21
> volume #3 level 0.209
> volume #3 level 0.211
> view front
> save /Users/ConstantinePetridis/Desktop/BV_FE_front.png width 3000 height
> 1974 supersample 4
> view side
Expected an objects specifier or a view name or a keyword
> view diagonal
> save /Users/ConstantinePetridis/Desktop/BV_FE_diag.png width 3000 height
> 1974 supersample 4
> view top
> save /Users/ConstantinePetridis/Desktop/BV_FE_top.png width 3000 height 1974
> supersample 4
> view slice
> save /Users/ConstantinePetridis/Desktop/BV_FE_slice.png width 3000 height
> 1974 supersample 4
> view front
> volume #3 color #8c8dfc80
> view slice
> ui tool show "Side View"
> view name slice
> undo
> view name slice
[Repeated 3 time(s)]
> ui mousemode right rotate
> ui mousemode right clip
> view name slice
> view matrix
view matrix camera
-0.94831,0.019789,-0.31672,-111.3,-0.31734,-0.059575,0.94644,2298.4,-0.00014037,0.99803,0.062776,594.4
view matrix models
#1,0.22884,0.97346,2.2675e-07,6.5664,-0.97346,0.22884,5.8736e-07,795.07,5.199e-07,-3.5514e-07,1,179.58,#1.1,1,0,0,0,0,1,0,0,0,0,1,0,#2,1,0.00083921,3.6674e-07,-0.41412,-0.00083921,1,1.9537e-07,0.41458,-3.6657e-07,-1.9568e-07,1,-0.16369,#2.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.2,1,0,0,0,0,1,0,0,0,0,1,0,#2.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#3,1,-0.00067234,5.3385e-06,67.653,0.00067234,1,2.164e-05,67.085,-5.353e-06,-2.1636e-05,1,119.77,#3.1,1,0,0,0,0,1,0,0,0,0,1,0,#3.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#4,-0.077036,0.99703,2.7381e-05,101.45,-0.99703,-0.077036,3.09e-05,951.16,3.2916e-05,-2.4918e-05,1,58.136,#4.1,1,0,0,0,0,1,0,0,0,0,1,0,#5,0.99509,0.098993,-3.3983e-05,62.481,0.098993,-0.99509,3.2042e-05,846.52,-3.0643e-05,-3.5249e-05,-1,939.76,#5.1,1,0,0,0,0,1,0,0,0,0,1,0,#6,0.66683,-0.74518,0.0062522,524.05,-0.74518,-0.66686,-0.0035196,1050.6,0.006792,-0.002312,-0.99997,936.44,#6.1,1,0,0,0,0,1,0,0,0,0,1,0
> save /Users/ConstantinePetridis/Desktop/BV_FE_slice.png width 3000 height
> 1974 supersample 4
> volume #2 color #d2d2d3f4
> volume #2 color #d2d2d3
> volume #2 color #d2d2d3f3
> volume #2 color #d2d2d3
> save /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs includeMaps true
> open 8I8B
8i8b title:
Outer shell and inner layer structures of Autographa californica multiple
nucleopolyhedrovirus (AcMNPV) [more info...]
Chain information for 8i8b #7
---
Chain | Description | UniProt
A B C | Viral capsid associated protein | A0A0N7CTI8_9ABAC 1-691
D | AcOrf-109 peptide | A0A0N7CRZ7_9ABAC 1-390
E | Early 49 Daa protein | A0A0N7CTL8_9ABAC 1-477
F G | P40 | A0A0N7CQX9_9ABAC 1-361
H I | Occlusion-derived virus envelope/capsid protein | A0A0N7CT36_9ABAC 1-290
J | 38K | A0A0N7CSX4_9ABAC 1-320
W X Y Z | Major viral capsid protein | A0A0N6WHR0_9ABAC 1-347
> select add #7
30015 atoms, 30679 bonds, 10 pseudobonds, 3660 residues, 2 models selected
> show sel cartoons
> hide sel surfaces
> hide sel atoms
> select subtract #7
Nothing selected
> sequence chain #7/A#7/B#7/C
Alignment identifier is 1
> hide cartoons
> show surfaces
> hide surfaces
> show #7/A-C
> show #7/A-C cartoons
> hide surfaces
> hide #7/A-C surfaces
> hide atoms
> select add #7
30015 atoms, 30679 bonds, 10 pseudobonds, 3660 residues, 2 models selected
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> view matrix models
> #7,-0.55519,-0.77651,0.29799,690.82,0.76662,-0.3388,0.54544,-241.77,-0.32258,0.53127,0.78339,103.57
> ui mousemode right "translate selected models"
> view matrix models
> #7,-0.55519,-0.77651,0.29799,664.48,0.76662,-0.3388,0.54544,-203.22,-0.32258,0.53127,0.78339,294.77
> ui mousemode right "rotate selected models"
> view matrix models
> #7,0.90677,0.38864,0.16346,-123.03,-0.24069,0.79549,-0.55612,374.79,-0.34616,0.46493,0.81487,306.61
> view matrix models
> #7,0.5346,0.83963,0.096021,-35.653,-0.77475,0.53231,-0.34119,571.6,-0.33759,0.10801,0.93508,331.78
> view matrix models
> #7,0.57975,0.79531,0.17713,-74.058,-0.81452,0.56002,0.15147,408.62,0.021266,-0.23209,0.97246,238.4
> ui mousemode right "translate selected models"
> view matrix models
> #7,0.57975,0.79531,0.17713,-33.385,-0.81452,0.56002,0.15147,460.61,0.021266,-0.23209,0.97246,248.01
> view matrix models
> #7,0.57975,0.79531,0.17713,-53.863,-0.81452,0.56002,0.15147,465.73,0.021266,-0.23209,0.97246,233.23
> hide #!2 models
> view matrix models
> #7,0.57975,0.79531,0.17713,-34.001,-0.81452,0.56002,0.15147,475.16,0.021266,-0.23209,0.97246,227.42
> view matrix models
> #7,0.57975,0.79531,0.17713,-42.007,-0.81452,0.56002,0.15147,472.25,0.021266,-0.23209,0.97246,239.31
> ui mousemode right "rotate selected models"
> view matrix models
> #7,0.57983,0.78956,-0.20099,92.537,-0.7095,0.6106,0.35181,348.17,0.4005,-0.061389,0.91424,69.47
> view matrix models
> #7,0.91297,0.39972,-0.081914,-9.1552,-0.35383,0.87556,0.32894,156.79,0.2032,-0.27133,0.94079,183.29
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #7,0.91297,0.39972,-0.081914,-18.147,-0.35383,0.87556,0.32894,159.95,0.2032,-0.27133,0.94079,183.5
> ui tool show "Fit in Map"
> fitmap #7 inMap #3
Fit molecule 8i8b (#7) to map J1663_FE (#3) using 30015 atoms
average map value = 0.2814, steps = 96
shifted from previous position = 10.8
rotated from previous position = 16.1 degrees
atoms outside contour = 8860, contour level = 0.211
Position of 8i8b (#7) relative to J1663_FE (#3) coordinates:
Matrix rotation and translation
0.90246535 0.42993054 0.02675881 -121.96814063
-0.43063237 0.89892384 0.08057105 209.56352313
0.01058582 -0.08423580 0.99638962 74.38816054
Axis -0.18806028 0.01845492 -0.98198409
Axis point 396.19186388 393.80100387 0.00000000
Rotation angle (degrees) 25.98753426
Shift along axis -46.24314981
> select clear
> hide #!3 models
> select #7/A-C/485
5049 atoms, 5151 bonds, 2 pseudobonds, 605 residues, 2 models selected
> select #7/A-C:485
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #7/A-C:480
9 atoms, 8 bonds, 1 residue, 1 model selected
> rainbow sel
> select add #7
30015 atoms, 30679 bonds, 10 pseudobonds, 3660 residues, 3 models selected
> rainbow sel
> select clear
> show #!5 models
> color #5 #8c8dfc70 models
> color #5 #8c8dfc7e models
> color #5 #8c8dfc46 models
> color #5 #8c8dfc58 models
> show #!2 models
> hide #!2 models
> open
> /Users/ConstantinePetridis/Downloads/fold_2025_01_03_16_08_vp80x1/fold_2025_01_03_16_08_vp80x1_model_0.cif
Chain information for fold_2025_01_03_16_08_vp80x1_model_0.cif #8
---
Chain | Description
A | .
> hide #8 models
> show #8 models
> hide #8 models
> show #8 models
> hide #8 models
> show #8 models
> hide #!7 models
> hide #!5 models
> show #!5 models
> show #!7 models
> select add #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> ui mousemode right "move picked models"
> ui mousemode right "translate selected models"
> view matrix models #8,1,0,0,414.74,0,1,0,29.281,0,0,1,615.06
> view matrix models #8,1,0,0,376.64,0,1,0,25.149,0,0,1,578.93
> open
> /Users/ConstantinePetridis/Downloads/fold_2025_01_03_16_08_vp80x1/fold_2025_01_03_16_08_vp80x1_model_1.cif
Chain information for fold_2025_01_03_16_08_vp80x1_model_1.cif #9
---
Chain | Description
A | .
> select add #9
11218 atoms, 11396 bonds, 1382 residues, 2 models selected
> select subtract #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> view matrix models #9,1,0,0,127.72,0,1,0,53.916,0,0,1,531.41
> view matrix models #9,1,0,0,243.93,0,1,0,-8.1051,0,0,1,567.78
> hide #9 models
> select subtract #9
Nothing selected
> select add #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> view matrix models #8,1,0,0,584.9,0,1,0,192.74,0,0,1,569.87
> view matrix models #8,1,0,0,568.66,0,1,0,323.29,0,0,1,503.74
> view matrix models #8,1,0,0,437.31,0,1,0,247.49,0,0,1,572.67
> view matrix models #8,1,0,0,460.65,0,1,0,249.63,0,0,1,580.54
> ui tool show Matchmaker
> matchmaker #8/A to #7/C pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8i8b, chain C (#7) with fold_2025_01_03_16_08_vp80x1_model_0.cif,
chain A (#8), sequence alignment score = 2774.4
RMSD between 179 pruned atom pairs is 0.767 angstroms; (across all 229 pairs:
13.472)
> hide #8 models
> volume #3 level 0.1697
> volume #3 level 0.211
> show #8 models
> matchmaker #8 to #7/A pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8i8b, chain A (#7) with fold_2025_01_03_16_08_vp80x1_model_0.cif,
chain A (#8), sequence alignment score = 2745
RMSD between 126 pruned atom pairs is 0.835 angstroms; (across all 188 pairs:
8.377)
> matchmaker #8 to #7/C pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8i8b, chain C (#7) with fold_2025_01_03_16_08_vp80x1_model_0.cif,
chain A (#8), sequence alignment score = 2774.4
RMSD between 179 pruned atom pairs is 0.767 angstroms; (across all 229 pairs:
13.472)
> matchmaker #9 to #7/C pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8i8b, chain C (#7) with fold_2025_01_03_16_08_vp80x1_model_1.cif,
chain A (#9), sequence alignment score = 2787
RMSD between 180 pruned atom pairs is 0.786 angstroms; (across all 229 pairs:
11.833)
> show #9 models
> hide #8 models
> select subtract #8
Nothing selected
> open
> /Users/ConstantinePetridis/Downloads/fold_2025_01_03_16_08_vp80x1/fold_2025_01_03_16_08_vp80x1_model_2.cif
Chain information for fold_2025_01_03_16_08_vp80x1_model_2.cif #10
---
Chain | Description
A | .
> open
> /Users/ConstantinePetridis/Downloads/fold_2025_01_03_16_08_vp80x1/fold_2025_01_03_16_08_vp80x1_model_3.cif
Chain information for fold_2025_01_03_16_08_vp80x1_model_3.cif #11
---
Chain | Description
A | .
> open
> /Users/ConstantinePetridis/Downloads/fold_2025_01_03_16_08_vp80x1/fold_2025_01_03_16_08_vp80x1_model_4.cif
Chain information for fold_2025_01_03_16_08_vp80x1_model_4.cif #12
---
Chain | Description
A | .
> ui tool show Matchmaker
[Repeated 1 time(s)]
> matchmaker #8-12 to #7/C pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8i8b, chain C (#7) with fold_2025_01_03_16_08_vp80x1_model_0.cif,
chain A (#8), sequence alignment score = 2774.4
RMSD between 179 pruned atom pairs is 0.767 angstroms; (across all 229 pairs:
13.472)
Matchmaker 8i8b, chain C (#7) with fold_2025_01_03_16_08_vp80x1_model_1.cif,
chain A (#9), sequence alignment score = 2787
RMSD between 180 pruned atom pairs is 0.786 angstroms; (across all 229 pairs:
11.833)
Matchmaker 8i8b, chain C (#7) with fold_2025_01_03_16_08_vp80x1_model_2.cif,
chain A (#10), sequence alignment score = 2775
RMSD between 178 pruned atom pairs is 0.812 angstroms; (across all 229 pairs:
3.873)
Matchmaker 8i8b, chain C (#7) with fold_2025_01_03_16_08_vp80x1_model_3.cif,
chain A (#11), sequence alignment score = 2781
RMSD between 181 pruned atom pairs is 0.820 angstroms; (across all 229 pairs:
12.164)
Matchmaker 8i8b, chain C (#7) with fold_2025_01_03_16_08_vp80x1_model_4.cif,
chain A (#12), sequence alignment score = 2775
RMSD between 179 pruned atom pairs is 0.784 angstroms; (across all 229 pairs:
5.761)
> hide #9 models
> hide #10 models
> hide #11 models
> hide #12 models
> show #11 models
> show #10 models
> hide #11 models
> show #9 models
> hide #9 models
> show #8 models
> hide #10 models
> close #9-12
> select add #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> view matrix models
> #8,-0.33087,0.92677,0.17782,239.4,0.17859,-0.12354,0.97614,420.91,0.92662,0.35474,-0.12464,625.24
> ui mousemode right "rotate selected models"
> view matrix models
> #8,0.96976,0.18739,-0.15635,229.57,-0.1066,0.90154,0.41935,414.16,0.21953,-0.39001,0.89426,642.41
> ui mousemode right "translate selected models"
> view matrix models
> #8,0.96976,0.18739,-0.15635,320.18,-0.1066,0.90154,0.41935,268.06,0.21953,-0.39001,0.89426,613.06
> view matrix models
> #8,0.96976,0.18739,-0.15635,366.43,-0.1066,0.90154,0.41935,253.63,0.21953,-0.39001,0.89426,618.23
> ui mousemode right "rotate selected models"
> view matrix models
> #8,0.23162,-0.971,0.059244,378.67,0.93761,0.23906,0.25248,246.88,-0.25932,-0.0029305,0.96579,620.94
> ui mousemode right "move picked models"
> ui mousemode right "translate selected models"
> view matrix models
> #8,0.23162,-0.971,0.059244,390.01,0.93761,0.23906,0.25248,355.44,-0.25932,-0.0029305,0.96579,590.38
> view matrix models
> #8,0.23162,-0.971,0.059244,431.94,0.93761,0.23906,0.25248,332.25,-0.25932,-0.0029305,0.96579,584.9
> view matrix models
> #8,0.23162,-0.971,0.059244,425.8,0.93761,0.23906,0.25248,336.21,-0.25932,-0.0029305,0.96579,585.13
> ui mousemode right "rotate selected models"
> view matrix models
> #8,-0.3126,-0.94721,-0.071286,428.77,0.93721,-0.31977,0.13921,337.52,-0.15465,-0.023295,0.98769,584.59
> view matrix models
> #8,-0.27615,-0.92399,-0.26454,426.74,0.90243,-0.34398,0.25941,338.91,-0.33069,-0.16709,0.92883,586.03
> view matrix models
> #8,0.24386,-0.89807,-0.36607,421.77,0.92524,0.10232,0.36533,337.82,-0.29064,-0.42779,0.85588,586.16
> view matrix models
> #8,0.3086,-0.94876,-0.067985,424.03,0.90394,0.27027,0.33144,337.01,-0.29609,-0.16374,0.94102,585.85
> ui mousemode right "translate selected models"
> view matrix models
> #8,0.3086,-0.94876,-0.067985,424.13,0.90394,0.27027,0.33144,335.13,-0.29609,-0.16374,0.94102,591.48
> view matrix models
> #8,0.3086,-0.94876,-0.067985,422.75,0.90394,0.27027,0.33144,337.64,-0.29609,-0.16374,0.94102,594.67
> fitmap #8 inMap #3
Fit molecule fold_2025_01_03_16_08_vp80x1_model_0.cif (#8) to map J1663_FE
(#3) using 5609 atoms
average map value = 0.2021, steps = 276
shifted from previous position = 37.8
rotated from previous position = 62.6 degrees
atoms outside contour = 2697, contour level = 0.211
Position of fold_2025_01_03_16_08_vp80x1_model_0.cif (#8) relative to J1663_FE
(#3) coordinates:
Matrix rotation and translation
0.07597177 -0.98817675 -0.13317281 374.71403761
0.19670877 -0.11608066 0.97356609 277.83676812
-0.97751417 -0.10015980 0.18556418 443.06936938
Axis -0.59379417 0.46693945 0.65526790
Axis point 298.40216197 218.87930806 0.00000000
Rotation angle (degrees) 115.29458126
Shift along axis 197.55907340
> select subtract #8
Nothing selected
> hide #!3 models
> show #!3 models
> hide #!3 models
> hide #8 models
> ui mousemode right clip
> show #!2 models
> volume #5 level 0.21
> hide #!5 models
> show #!5 models
> color #5 #00000058 models
> undo
> color #5 #a3a7ff58 models
> color #5 #8c8dfcff models
> color #5 #c1153cff models
> volume #5 level 0.1967
> volume #5 level 0.1901
> volume #5 level 0.1818
> volume #2 level 0.2924
> volume #5 level 0.1801
> volume #5 color #8c8dfc80
> show #8 models
> hide #!5 models
> hide #8/A:470-691
> hide #8/A:470-691 cartoons
> select add #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> select clear
> ui mousemode right "translate selected models"
> select add #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> ui mousemode right "rotate selected models"
> view matrix models
> #8,-0.784,-0.58956,0.19434,449.97,0.5852,-0.80637,-0.085449,335.96,0.20709,0.046738,0.9772,559.89
> view matrix models
> #8,-0.7894,0.25957,-0.5563,440.13,-0.31772,-0.94815,0.0084374,344.28,-0.52526,0.1834,0.83094,563.71
> view matrix models
> #8,-0.89125,-0.39728,0.21872,450.22,0.45335,-0.79308,0.40682,341.13,0.011841,0.46174,0.88694,558.93
> ui mousemode right "translate selected models"
> view matrix models
> #8,-0.89125,-0.39728,0.21872,457.51,0.45335,-0.79308,0.40682,329.37,0.011841,0.46174,0.88694,551.89
> view matrix models
> #8,-0.89125,-0.39728,0.21872,455.73,0.45335,-0.79308,0.40682,324,0.011841,0.46174,0.88694,552.62
> ui mousemode right "rotate selected models"
> view matrix models
> #8,-0.87984,-0.43916,0.1817,455.5,0.47518,-0.80567,0.3537,323.43,-0.0089451,0.39754,0.91754,553.31
> ui mousemode right "translate selected models"
> view matrix models
> #8,-0.87984,-0.43916,0.1817,453.6,0.47518,-0.80567,0.3537,325.37,-0.0089451,0.39754,0.91754,554.25
> show #!5 models
> ui mousemode right "rotate selected models"
> view matrix models
> #8,-0.45511,-0.88406,0.10639,451.5,0.83548,-0.38264,0.3944,321.22,-0.30797,0.26838,0.91276,557.03
> open 8I8B
8i8b title:
Outer shell and inner layer structures of Autographa californica multiple
nucleopolyhedrovirus (AcMNPV) [more info...]
Chain information for 8i8b #9
---
Chain | Description | UniProt
A B C | Viral capsid associated protein | A0A0N7CTI8_9ABAC 1-691
D | AcOrf-109 peptide | A0A0N7CRZ7_9ABAC 1-390
E | Early 49 Daa protein | A0A0N7CTL8_9ABAC 1-477
F G | P40 | A0A0N7CQX9_9ABAC 1-361
H I | Occlusion-derived virus envelope/capsid protein | A0A0N7CT36_9ABAC 1-290
J | 38K | A0A0N7CSX4_9ABAC 1-320
W X Y Z | Major viral capsid protein | A0A0N6WHR0_9ABAC 1-347
> ui tool show Matchmaker
> matchmaker #9/A#9/B#9/C to #7/A#7/B#7/C pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8i8b, chain A (#7) with 8i8b, chain A (#9), sequence alignment
score = 2761.8
Matchmaker 8i8b, chain B (#7) with 8i8b, chain B (#9), sequence alignment
score = 2761.8
Matchmaker 8i8b, chain C (#7) with 8i8b, chain C (#9), sequence alignment
score = 2822.4
RMSD between 605 pruned atom pairs is 0.000 angstroms; (across all 605 pairs:
0.000)
> hide sel atoms
> select add #9
35624 atoms, 36377 bonds, 10 pseudobonds, 4351 residues, 3 models selected
> hide sel atoms
> show sel cartoons
> color #9 #0d1c2cff
> select subtract #9
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> select subtract #8
Nothing selected
> select add #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> select subtract #8
Nothing selected
> hide #8 models
> ui mousemode right clip
> show #!2 models
> hide #!2 models
> color #9 #0d1c2cff
> color #9 #d2d2d3ff
> show #8 models
> select add #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models
> #8,-0.45511,-0.88406,0.10639,491.36,0.83548,-0.38264,0.3944,332.76,-0.30797,0.26838,0.91276,581.52
> open 8VWI
Summary of feedback from opening 8VWI fetched from pdb
---
warnings | Atom H1 is not in the residue template for MET /N:1
Atom H1 is not in the residue template for MET /i:1
note | Fetching compressed mmCIF 8vwi from http://files.rcsb.org/download/8vwi.cif
8vwi title:
The base complex of the AcMNPV baculovirus nucleocapsid (Class 1, localised
reconstruction) [more info...]
Chain information for 8vwi #10
---
Chain | Description | UniProt
A B C D E F V W X Y Z a | Major capsid protein | MCP_NPVAC 1-347
G H I b c d | Capsid-associated protein VP80 | VP80_NPVAC 1-691
J M Q S e h | Occlusion-derived virus envelope protein E27 | E27_NPVAC 1-290
K L R T f g | Protein C42 | C42_NPVAC 1-361
N i | Protein AC109 | AC109_NPVAC 1-390
O j | Protein AC142 | AC142_NPVAC 1-477
P k | 38K (AC98) protein in P143-LEF5 intergenic region | 38K_NPVAC 1-320
Non-standard residues in 8vwi #10
---
ZN — zinc ion
> select add #10
161875 atoms, 163633 bonds, 77 pseudobonds, 10305 residues, 4 models selected
> select subtract #8
156266 atoms, 157935 bonds, 77 pseudobonds, 9614 residues, 3 models selected
> show sel cartoons
> hide sel atoms
> select clear
> select #10/b:472-668
3289 atoms, 3323 bonds, 197 residues, 1 model selected
> select #10/c:477-682
3452 atoms, 3488 bonds, 206 residues, 1 model selected
> select #10/d:460-688
3743 atoms, 3780 bonds, 1 pseudobond, 223 residues, 2 models selected
> select #10/I:460-688
3740 atoms, 3777 bonds, 1 pseudobond, 224 residues, 2 models selected
> select #10/H:473-682
3513 atoms, 3549 bonds, 210 residues, 1 model selected
> select #10/G:475-668
3228 atoms, 3263 bonds, 194 residues, 1 model selected
> matchmaker #10/G#10/H#10/I to #7/A#7/B#7/C pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8i8b, chain A (#7) with 8vwi, chain G (#10), sequence alignment
score = 2652.6
Matchmaker 8i8b, chain B (#7) with 8vwi, chain H (#10), sequence alignment
score = 2649.6
Matchmaker 8i8b, chain C (#7) with 8vwi, chain I (#10), sequence alignment
score = 2731.8
RMSD between 311 pruned atom pairs is 1.250 angstroms; (across all 581 pairs:
4.160)
> select clear
> hide #!9 models
> hide #!7 models
> color #10 #d2d2d3ff
> hide #8 models
> rainbow #!10
> color #10 #dfd9fcff
> show #8 models
> select add #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> view matrix models
> #8,-0.45511,-0.88406,0.10639,543.02,0.83548,-0.38264,0.3944,283.99,-0.30797,0.26838,0.91276,617.35
> view matrix models
> #8,-0.45511,-0.88406,0.10639,444.98,0.83548,-0.38264,0.3944,459.45,-0.30797,0.26838,0.91276,600.64
> view matrix models
> #8,-0.45511,-0.88406,0.10639,331.15,0.83548,-0.38264,0.3944,410.32,-0.30797,0.26838,0.91276,602.64
> ui mousemode right clip
> ui mousemode right "translate selected models"
> view matrix models
> #8,-0.45511,-0.88406,0.10639,354.2,0.83548,-0.38264,0.3944,388.46,-0.30797,0.26838,0.91276,579.93
> ui mousemode right "rotate selected models"
> view matrix models
> #8,-0.33008,-0.94352,-0.02851,352.33,0.70873,-0.26766,0.65273,391.17,-0.62349,0.19525,0.75706,581.32
> view matrix models
> #8,-0.22548,-0.95818,-0.17623,350.32,0.80248,-0.28523,0.52408,389.43,-0.55243,-0.023249,0.83323,582.32
> view matrix models
> #8,-0.3036,-0.95103,-0.058011,351.91,0.88451,-0.30396,0.35391,387.42,-0.35421,0.056136,0.93348,581.33
> ui mousemode right "translate selected models"
> view matrix models
> #8,-0.3036,-0.95103,-0.058011,359.35,0.88451,-0.30396,0.35391,385.58,-0.35421,0.056136,0.93348,586.37
> ui mousemode right "rotate selected models"
> view matrix models
> #8,-0.32482,-0.9245,0.19946,361.6,0.9278,-0.27055,0.25688,384.28,-0.18352,0.2685,0.94564,584.3
> view matrix models
> #8,-0.27759,-0.95214,0.12796,360.74,0.94212,-0.24373,0.23025,383.83,-0.18804,0.18446,0.96468,584.84
> view matrix models
> #8,-0.052316,-0.98479,0.16568,359.47,0.9806,-0.019274,0.19508,382.32,-0.18892,0.17267,0.96669,584.91
> volume #5 level 0.05217
> ui mousemode right clip
[Repeated 1 time(s)]
> volume #5 level 0.1153
> ui mousemode right "translate selected models"
> view matrix models
> #8,-0.052316,-0.98479,0.16568,434.57,0.9806,-0.019274,0.19508,331.79,-0.18892,0.17267,0.96669,566.71
> ui mousemode right "rotate selected models"
> view matrix models
> #8,0.3051,-0.91518,-0.26338,427.88,0.85205,0.1388,0.50472,334.78,-0.42535,-0.3784,0.82213,569.54
> ui mousemode right "translate selected models"
> view matrix models
> #8,0.3051,-0.91518,-0.26338,429.63,0.85205,0.1388,0.50472,338.7,-0.42535,-0.3784,0.82213,590.77
> view matrix models
> #8,0.3051,-0.91518,-0.26338,427.92,0.85205,0.1388,0.50472,341.73,-0.42535,-0.3784,0.82213,595.28
> ui mousemode right "rotate selected models"
> view matrix models
> #8,0.41522,-0.90379,-0.10372,428.39,0.74173,0.27033,0.6138,342.97,-0.52671,-0.33179,0.78262,595.53
> view matrix models
> #8,0.41891,-0.90352,-0.090411,428.48,0.73123,0.27664,0.62352,343.11,-0.53835,-0.32731,0.77656,595.55
> view matrix models
> #8,0.35537,-0.93028,-0.091064,429.07,0.73966,0.22031,0.6359,343.38,-0.5715,-0.29334,0.76638,595.58
> view matrix models
> #8,0.47009,-0.86177,-0.1907,427.06,0.77137,0.29613,0.56329,342.21,-0.42895,-0.4119,0.80395,595.29
> view matrix models
> #8,0.42451,-0.88862,-0.17364,427.66,0.77195,0.25499,0.5823,342.53,-0.47317,-0.38123,0.79421,595.42
> view matrix models
> #8,0.4645,-0.88458,0.041929,429.18,0.73537,0.41167,0.5383,341.8,-0.49342,-0.21921,0.84171,595.32
> ui mousemode right "translate selected models"
> view matrix models
> #8,0.4645,-0.88458,0.041929,426.69,0.73537,0.41167,0.5383,340.14,-0.49342,-0.21921,0.84171,595.5
> volume #5 level 0.03555
> volume #5 level 0.018
> volume #5 level 0.18
> hide #10/Q
> hide #10/Q cartoons
> hide #10/R cartoons
> hide #10/S cartoons
> hide #10/T cartoons
> show #!7 models
> select subtract #8
Nothing selected
> hide #8 models
> save /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs includeMaps true
> graphics silhouettes width 2.3
> cartoon style protein modeHelix tube radius 1.9 sides 24
> hide #!10 models
> show #!10 models
> hide #!10 models
> show #!10 models
> hide #!5 models
> select add #10
156266 atoms, 157935 bonds, 77 pseudobonds, 9614 residues, 3 models selected
> rainbow sel
> select subtract #10
Nothing selected
> show #!5 models
> close #7
> close #9
> fitmap #10 inMap #5
Fit molecule 8vwi (#10) to map J1770_FE (#5) using 156266 atoms
average map value = 0.1952, steps = 68
shifted from previous position = 1.47
rotated from previous position = 0.601 degrees
atoms outside contour = 69289, contour level = 0.18
Position of 8vwi (#10) relative to J1770_FE (#5) coordinates:
Matrix rotation and translation
-0.95114419 0.30851336 0.01201014 507.01050285
0.30844994 0.95121582 -0.00686308 171.49398090
-0.01354159 -0.00282325 -0.99990432 663.94584373
Axis 0.15616368 0.98772815 -0.00245184
Axis point 242.12403205 0.00000000 330.65209235
Rotation angle (degrees) 179.25888171
Shift along axis 246.93816886
> graphics silhouettes width 2
> cartoon style protein modeHelix tube radius 1.9 sides 24
> graphics silhouettes width 1.8
> cartoon style protein modeHelix tube radius 1.9 sides 24
> graphics silhouettes width 2
> cartoon style protein modeHelix tube radius 1.9 sides 24
> rainbow #!10
> color #10 #dfd9fcff
> color #10 #d2d2d3ff
> rainbow #10/G-I
> rainbow #10/G-I, a-c
> color #10 #d2d2d3ff
> rainbow #10/G-I, b-d
> show #8 models
> select add #8
5609 atoms, 5698 bonds, 691 residues, 1 model selected
> save /Users/ConstantinePetridis/Desktop/AcMNPV_Caps.cxs includeMaps true
——— End of log from Fri Jan 3 17:12:52 2025 ———
opened ChimeraX session
OpenGL version: 4.1 Metal - 89.3
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro18,3
Model Number: MKGP3LL/A
Chip: Apple M1 Pro
Total Number of Cores: 8 (6 performance and 2 efficiency)
Memory: 16 GB
System Firmware Version: 11881.41.5
OS Loader Version: 11881.41.5
Software:
System Software Overview:
System Version: macOS 15.1.1 (24B91)
Kernel Version: Darwin 24.1.0
Time since boot: 30 days, 5 hours, 1 minute
Graphics/Displays:
Apple M1 Pro:
Chipset Model: Apple M1 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 14
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
XV272U V3:
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 2560 x 1440 @ 180.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Note:
See TracTickets
for help on using tickets.
