![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 12 months ago
Last modified 12 months ago
#16542 closed defect
ChimeraX bug report submission — at Initial Version
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.4.1-arm64-arm-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00000001f540fac0 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 315 in event_loop
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1003 in init
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1166 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.surface._surface, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, chimerax.pdb_lib._load_libs, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, lxml._elementpath, lxml.etree, scipy._lib._ccallback_c, scipy.linalg._fblas, scipy.linalg._flapack, scipy.linalg.cython_lapack, scipy.linalg._cythonized_array_utils, scipy.linalg._solve_toeplitz, scipy.linalg._decomp_lu_cython, scipy.linalg._matfuncs_sqrtm_triu, scipy.linalg.cython_blas, scipy.linalg._matfuncs_expm, scipy.linalg._decomp_update, scipy.sparse._sparsetools, _csparsetools, scipy.sparse._csparsetools, scipy.sparse.linalg._dsolve._superlu, scipy.sparse.linalg._eigen.arpack._arpack, scipy.sparse.linalg._propack._spropack, scipy.sparse.linalg._propack._dpropack, scipy.sparse.linalg._propack._cpropack, scipy.sparse.linalg._propack._zpropack, scipy.sparse.csgraph._tools, scipy.sparse.csgraph._shortest_path, scipy.sparse.csgraph._traversal, scipy.sparse.csgraph._min_spanning_tree, scipy.sparse.csgraph._flow, scipy.sparse.csgraph._matching, scipy.sparse.csgraph._reordering, scipy.optimize._minpack2, scipy.optimize._group_columns, scipy._lib.messagestream, scipy.optimize._trlib._trlib, scipy.optimize._lbfgsb, _moduleTNC, scipy.optimize._moduleTNC, scipy.optimize._cobyla, scipy.optimize._slsqp, scipy.optimize._minpack, scipy.optimize._lsq.givens_elimination, scipy.optimize._zeros, scipy.optimize._highs.cython.src._highs_wrapper, scipy.optimize._highs._highs_wrapper, scipy.optimize._highs.cython.src._highs_constants, scipy.optimize._highs._highs_constants, scipy.linalg._interpolative, scipy.optimize._bglu_dense, scipy.optimize._lsap, scipy.spatial._ckdtree, scipy.spatial._qhull, scipy.spatial._voronoi, scipy.spatial._distance_wrap, scipy.spatial._hausdorff, scipy.special._ufuncs_cxx, scipy.special._cdflib, scipy.special._ufuncs, scipy.special._specfun, scipy.special._comb, scipy.special._ellip_harm_2, scipy.spatial.transform._rotation, scipy.optimize._direct, chimerax.atom_search.ast, chimerax.chem_group._chem_group, chimerax.coulombic._esp, PIL._imagingmath, PIL._webp, psutil._psutil_osx, psutil._psutil_posix (total: 124)
{"app_name":"ChimeraX","timestamp":"2024-12-30 17:37:14.00 -0800","app_version":"1.8.0","slice_uuid":"17982d98-65bc-3327-8526-577ec996453c","build_version":"1.8.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 14.4.1 (23E224)","roots_installed":0,"name":"ChimeraX","incident_id":"56F0AC51-8F78-4063-9EA9-F2D1E6959A2E"}
{
"uptime" : 71000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "Mac15,9",
"coalitionID" : 2735,
"osVersion" : {
"train" : "macOS 14.4.1",
"build" : "23E224",
"releaseType" : "User"
},
"captureTime" : "2024-12-30 17:37:13.2966 -0800",
"codeSigningMonitor" : 1,
"incident" : "56F0AC51-8F78-4063-9EA9-F2D1E6959A2E",
"pid" : 90614,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2024-12-30 15:56:08.2614 -0800",
"procStartAbsTime" : 1563443327568,
"procExitAbsTime" : 1709001829284,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"AAF5F10B-ACEB-5840-A970-8CE5D4DE2A10","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "4050AB06-83DF-3B8B-48D6-B07A49291BA3",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRW+D\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkVDg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"wakeTime" : 6563,
"sleepWakeUUID" : "3A8CDE3C-9D8E-401B-8861-89CB8683291F",
"sip" : "enabled",
"vmRegionInfo" : "0x466479941348 is not in any region. Bytes after previous region: 76916314084169 Bytes before following region: 28155765845176\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n commpage (reserved) 1000000000-7000000000 [384.0G] ---\/--- SM=NUL reserved VM address space (unallocated)\n---> GAP OF 0x5f9000000000 BYTES\n MALLOC_NANO 600000000000-600020000000 [512.0M] rw-\/rwx SM=PRV ",
"exception" : {"codes":"0x0000000000000001, 0x0000c66479941348","rawCodes":[1,218134838776648],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000c66479941348 -> 0x0000466479941348 (possible pointer authentication failure)"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":90614},
"vmregioninfo" : "0x466479941348 is not in any region. Bytes after previous region: 76916314084169 Bytes before following region: 28155765845176\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n commpage (reserved) 1000000000-7000000000 [384.0G] ---\/--- SM=NUL reserved VM address space (unallocated)\n---> GAP OF 0x5f9000000000 BYTES\n MALLOC_NANO 600000000000-600020000000 [512.0M] rw-\/rwx SM=PRV ",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : [{"threadState":{"x":[{"value":0},{"value":0},{"value":1},{"value":5503351448},{"value":112},{"value":95},{"value":2305843014878128912},{"value":956},{"value":1084022050000970716},{"value":1084022044443498780},{"value":14757395258967641293},{"value":4294967286},{"value":5503351377},{"value":0},{"value":49},{"value":4294967280},{"value":328},{"value":8581000240},{"value":0},{"value":11},{"value":8409643712,"symbolLocation":0,"symbol":"_main_thread"},{"value":259},{"value":8409643936,"symbolLocation":224,"symbol":"_main_thread"},{"value":1},{"value":4398138928,"symbolLocation":0,"symbol":"faulthandler_handlers"},{"value":8415223808,"symbolLocation":0,"symbol":"OBJC_IVAR_$_NSCGSStatusItem._parentWindowID"},{"value":8415223808,"symbolLocation":0,"symbol":"OBJC_IVAR_$_NSCGSStatusItem._parentWindowID"},{"value":4},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667906080},"cpsr":{"value":1073745920},"fp":{"value":5503351520},"sp":{"value":5503351488},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667676256,"matchesCrashFrame":1},"far":{"value":0}},"id":1165774,"triggered":true,"name":"CrBrowserMain","queue":"com.apple.main-thread","frames":[{"imageOffset":39520,"symbol":"__pthread_kill","symbolLocation":8,"imageIndex":231},{"imageOffset":27680,"symbol":"pthread_kill","symbolLocation":288,"imageIndex":232},{"imageOffset":259304,"symbol":"raise","symbolLocation":32,"imageIndex":233},{"imageOffset":2417160,"symbol":"faulthandler_fatal_error","symbolLocation":392,"imageIndex":229},{"imageOffset":17796,"symbol":"_sigtramp","symbolLocation":56,"imageIndex":234},{"imageOffset":343184,"imageIndex":161},{"imageOffset":343184,"imageIndex":161},{"imageOffset":380320,"symbol":"_NSViewHierarchyDidChangeBackingProperties","symbolLocation":244,"imageIndex":235},{"imageOffset":11472316,"symbol":"-[NSWindow _postWindowDidChangeBackingPropertiesAndDisplayWindowForPreviousBackingScaleFactor:previousColorSpace:]","symbolLocation":192,"imageIndex":235},{"imageOffset":2094616,"symbol":"__67-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]_block_invoke","symbolLocation":448,"imageIndex":235},{"imageOffset":509468,"symbol":"NSPerformVisuallyAtomicChange","symbolLocation":108,"imageIndex":235},{"imageOffset":2094156,"symbol":"-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]","symbolLocation":96,"imageIndex":235},{"imageOffset":3400192,"symbol":"-[NSWindow _screenChanged:]","symbolLocation":136,"imageIndex":235},{"imageOffset":3400024,"symbol":"-[NSWindow _displayChangedSoAdjustWindows:]","symbolLocation":112,"imageIndex":235},{"imageOffset":14662044,"symbol":"___NSApplicationPerformScreenInvalidationReactions_block_invoke","symbolLocation":72,"imageIndex":235},{"imageOffset":219312,"symbol":"-[NSApplication enumerateWindowsWithOptions:usingBlock:]","symbolLocation":236,"imageIndex":235},{"imageOffset":14660804,"symbol":"___NSApplicationReactToScreenInvalidation_block_invoke","symbolLocation":856,"imageIndex":235},{"imageOffset":14659196,"symbol":"_NSApplicationReactToScreenInvalidation","symbolLocation":292,"imageIndex":235},{"imageOffset":14659668,"symbol":"-[NSApplication(ScreenHandling) _reactToDisplayChanges:]","symbolLocation":372,"imageIndex":235},{"imageOffset":8125852,"symbol":"_NSCGSDisplayConfigurationUpdateAndInvokeObservers","symbolLocation":416,"imageIndex":235},{"imageOffset":8126756,"symbol":"_NSCGSDisplayConfigurationDidReconfigureNotificationHandler","symbolLocation":308,"imageIndex":235},{"imageOffset":46056,"symbol":"(anonymous namespace)::notify_datagram_handler(unsigned int, CGSDatagramType, void*, unsigned long, void*)","symbolLocation":876,"imageIndex":236},{"imageOffset":3838500,"symbol":"CGSDatagramReadStream::dispatchMainQueueDatagrams()","symbolLocation":228,"imageIndex":236},{"imageOffset":3838240,"symbol":"invocation function for block in CGSDatagramReadStream::mainQueueWakeup()","symbolLocation":28,"imageIndex":236},{"imageOffset":10064,"symbol":"_dispatch_call_block_and_release","symbolLocation":32,"imageIndex":237},{"imageOffset":17384,"symbol":"_dispatch_client_callout","symbolLocation":20,"imageIndex":237},{"imageOffset":76728,"symbol":"_dispatch_main_queue_drain","symbolLocation":988,"imageIndex":237},{"imageOffset":75724,"symbol":"_dispatch_main_queue_callback_4CF","symbolLocation":44,"imageIndex":237},{"imageOffset":783532,"symbol":"__CFRUNLOOP_IS_SERVICING_THE_MAIN_DISPATCH_QUEUE__","symbolLocation":16,"imageIndex":238},{"imageOffset":511024,"symbol":"__CFRunLoopRun","symbolLocation":1996,"imageIndex":238},{"imageOffset":507404,"symbol":"CFRunLoopRunSpecific","symbolLocation":608,"imageIndex":238},{"imageOffset":208896,"symbol":"RunCurrentEventLoopInMode","symbolLocation":292,"imageIndex":239},{"imageOffset":208444,"symbol":"ReceiveNextEventCommon","symbolLocation":648,"imageIndex":239},{"imageOffset":207764,"symbol":"_BlockUntilNextEventMatchingListInModeWithFilter","symbolLocation":76,"imageIndex":239},{"imageOffset":239984,"symbol":"_DPSNextEvent","symbolLocation":660,"imageIndex":235},{"imageOffset":8572396,"symbol":"-[NSApplication(NSEventRouting) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]","symbolLocation":700,"imageIndex":235},{"imageOffset":187576,"symbol":"-[NSApplication run]","symbolLocation":476,"imageIndex":235},{"imageOffset":81772,"imageIndex":161},{"imageOffset":573772,"symbol":"QEventLoop::exec(QFlags)","symbolLocation":540,"imageIndex":186},{"imageOffset":535260,"symbol":"QCoreApplication::exec()","symbolLocation":112,"imageIndex":186},{"imageOffset":2507676,"symbol":"meth_QApplication_exec(_object*, _object*)","symbolLocation":96,"imageIndex":179},{"imageOffset":1004504,"symbol":"cfunction_call","symbolLocation":96,"imageIndex":229},{"imageOffset":594156,"symbol":"_PyObject_MakeTpCall","symbolLocation":128,"imageIndex":229},{"imageOffset":1789244,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":54984,"imageIndex":229},{"imageOffset":1729512,"symbol":"PyEval_EvalCode","symbolLocation":276,"imageIndex":229},{"imageOffset":1707120,"symbol":"builtin_exec","symbolLocation":428,"imageIndex":229},{"imageOffset":1007044,"symbol":"cfunction_vectorcall_FASTCALL_KEYWORDS","symbolLocation":80,"imageIndex":229},{"imageOffset":1788292,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":54032,"imageIndex":229},{"imageOffset":1811404,"symbol":"_PyEval_Vector","symbolLocation":156,"imageIndex":229},{"imageOffset":2389028,"symbol":"pymain_run_module","symbolLocation":256,"imageIndex":229},{"imageOffset":2387652,"symbol":"Py_RunMain","symbolLocation":1784,"imageIndex":229},{"imageOffset":2392180,"symbol":"pymain_main","symbolLocation":52,"imageIndex":229},{"imageOffset":2392116,"symbol":"Py_Main","symbolLocation":36,"imageIndex":229},{"imageOffset":15700,"symbol":"main","symbolLocation":128,"imageIndex":230},{"imageOffset":24800,"symbol":"start","symbolLocation":2360,"imageIndex":240}]},{"id":1165970,"name":"ThreadPoolServiceThread","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553150928832},{"value":4},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":3},{"value":2},{"value":13629491872},{"value":63235},{"value":1},{"value":1},{"value":369},{"value":13198913536},{"value":0},{"value":5500452600},{"value":4594811712},{"value":0},{"value":13198912848},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":13522835896},"cpsr":{"value":2684358656},"fp":{"value":13198912832},"sp":{"value":13198912768},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667690316},"far":{"value":0}},"frames":[{"imageOffset":53580,"symbol":"kevent64","symbolLocation":8,"imageIndex":231},{"imageOffset":66705848,"imageIndex":169},{"imageOffset":66705328,"imageIndex":169},{"imageOffset":66336288,"imageIndex":169},{"imageOffset":66064512,"imageIndex":169},{"imageOffset":66483648,"imageIndex":169},{"imageOffset":66384288,"imageIndex":169},{"imageOffset":66484032,"imageIndex":169},{"imageOffset":66589352,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}]},{"id":1165971,"name":"ThreadPoolForegroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869442},{"value":0},{"value":195725954646016},{"value":0},{"value":195725954646016},{"value":32},{"value":33000},{"value":18446744073709550527},{"value":45571},{"value":0},{"value":1},{"value":45571},{"value":2045},{"value":2743269595},{"value":219},{"value":18446744073709551569},{"value":194560},{"value":0},{"value":33000},{"value":32},{"value":195725954646016},{"value":0},{"value":195725954646016},{"value":13207334160},{"value":0},{"value":17179870466},{"value":17179869442},{"value":1282}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667717412},"cpsr":{"value":4096},"fp":{"value":13207333504},"sp":{"value":13207333424},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667641332},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":231},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":231},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":231},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":231},{"imageOffset":66741424,"imageIndex":169},{"imageOffset":66197236,"imageIndex":169},{"imageOffset":66429892,"imageIndex":169},{"imageOffset":66433464,"imageIndex":169},{"imageOffset":66432016,"imageIndex":169},{"imageOffset":66431744,"imageIndex":169},{"imageOffset":66589352,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}]},{"id":1165972,"name":"ThreadPoolBackgroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869442},{"value":0},{"value":270492745334784},{"value":0},{"value":270492745334784},{"value":32},{"value":33000},{"value":18446744073709550527},{"value":62979},{"value":0},{"value":1},{"value":62979},{"value":2045},{"value":2747463899},{"value":219},{"value":18446744073709551569},{"value":194560},{"value":0},{"value":33000},{"value":32},{"value":270492745334784},{"value":0},{"value":270492745334784},{"value":13215755536},{"value":0},{"value":17179870466},{"value":17179869442},{"value":1282}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667717412},"cpsr":{"value":4096},"fp":{"value":13215754880},"sp":{"value":13215754800},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667641332},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":231},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":231},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":231},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":231},{"imageOffset":66741424,"imageIndex":169},{"imageOffset":66197236,"imageIndex":169},{"imageOffset":66429892,"imageIndex":169},{"imageOffset":66433464,"imageIndex":169},{"imageOffset":66431884,"imageIndex":169},{"imageOffset":66431792,"imageIndex":169},{"imageOffset":66589352,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}]},{"id":1165973,"name":"Chrome_IOThread","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553218849024},{"value":3},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":9223372036854775810},{"value":13629491920},{"value":47363},{"value":1},{"value":1},{"value":369},{"value":13224177664},{"value":0},{"value":5500444664},{"value":5399577296},{"value":0},{"value":13224176960},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":13522835896},"cpsr":{"value":1610616832},"fp":{"value":13224176944},"sp":{"value":13224176880},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667690316},"far":{"value":0}},"frames":[{"imageOffset":53580,"symbol":"kevent64","symbolLocation":8,"imageIndex":231},{"imageOffset":66705848,"imageIndex":169},{"imageOffset":66705328,"imageIndex":169},{"imageOffset":66336288,"imageIndex":169},{"imageOffset":66064512,"imageIndex":169},{"imageOffset":66483648,"imageIndex":169},{"imageOffset":42148336,"imageIndex":169},{"imageOffset":66484032,"imageIndex":169},{"imageOffset":66589352,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}]},{"id":1165974,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":210019605807104},{"value":0},{"value":210019605807104},{"value":32},{"value":0},{"value":18446744073709550527},{"value":48899},{"value":0},{"value":1},{"value":48899},{"value":48643},{"value":1},{"value":1},{"value":18446744073709551569},{"value":13232599040},{"value":0},{"value":0},{"value":32},{"value":210019605807104},{"value":0},{"value":210019605807104},{"value":13232598096},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667717412},"cpsr":{"value":4096},"fp":{"value":13232597440},"sp":{"value":13232597360},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667641332},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":231},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":231},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":231},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":231},{"imageOffset":66741424,"imageIndex":169},{"imageOffset":66197236,"imageIndex":169},{"imageOffset":66197084,"imageIndex":169},{"imageOffset":65870644,"imageIndex":169},{"imageOffset":66336288,"imageIndex":169},{"imageOffset":66064512,"imageIndex":169},{"imageOffset":66483648,"imageIndex":169},{"imageOffset":66484032,"imageIndex":169},{"imageOffset":66589352,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}]},{"id":1165979,"name":"Chrome_InProcGpuThread","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":246303489523712},{"value":0},{"value":246303489523712},{"value":32},{"value":0},{"value":18446744073709550527},{"value":57347},{"value":0},{"value":1},{"value":57347},{"value":57603},{"value":1},{"value":1},{"value":18446744073709551569},{"value":13274705920},{"value":0},{"value":0},{"value":32},{"value":246303489523712},{"value":0},{"value":246303489523712},{"value":13274704976},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667717412},"cpsr":{"value":4096},"fp":{"value":13274704320},"sp":{"value":13274704240},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667641332},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":231},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":231},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":231},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":231},{"imageOffset":66741424,"imageIndex":169},{"imageOffset":66197236,"imageIndex":169},{"imageOffset":66197084,"imageIndex":169},{"imageOffset":65870644,"imageIndex":169},{"imageOffset":66336288,"imageIndex":169},{"imageOffset":66064512,"imageIndex":169},{"imageOffset":66483648,"imageIndex":169},{"imageOffset":66484032,"imageIndex":169},{"imageOffset":66589352,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}]},{"id":1165980,"name":"Chrome_ChildIOThread","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553143908752},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":1},{"value":3298534884098},{"value":13629492016},{"value":56067},{"value":1},{"value":1},{"value":369},{"value":13283127296},{"value":0},{"value":5390336744},{"value":4595752688},{"value":0},{"value":13283126592},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":13522835896},"cpsr":{"value":2684358656},"fp":{"value":13283126576},"sp":{"value":13283126512},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667690316},"far":{"value":0}},"frames":[{"imageOffset":53580,"symbol":"kevent64","symbolLocation":8,"imageIndex":231},{"imageOffset":66705848,"imageIndex":169},{"imageOffset":66705328,"imageIndex":169},{"imageOffset":66336288,"imageIndex":169},{"imageOffset":66064512,"imageIndex":169},{"imageOffset":66483648,"imageIndex":169},{"imageOffset":107949588,"imageIndex":169},{"imageOffset":66484032,"imageIndex":169},{"imageOffset":66589352,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}]},{"id":1165981,"name":"CompositorTileWorker1","threadState":{"x":[{"value":260},{"value":0},{"value":512},{"value":0},{"value":0},{"value":161},{"value":0},{"value":0},{"value":13291548248},{"value":0},{"value":5401453104},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":5401453080},{"value":5401453208},{"value":13291548896},{"value":0},{"value":0},{"value":512},{"value":513},{"value":768},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":13291548368},"sp":{"value":13291548224},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}},"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":66586532,"imageIndex":169},{"imageOffset":99447652,"imageIndex":169},{"imageOffset":66589352,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}]},{"id":1165982,"name":"ThreadPoolSingleThreadSharedForeground0","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":223213745340416},{"value":0},{"value":223213745340416},{"value":32},{"value":0},{"value":18446744073709550527},{"value":51971},{"value":0},{"value":1},{"value":51971},{"value":2045},{"value":4121172174},{"value":206},{"value":18446744073709551569},{"value":268288},{"value":0},{"value":0},{"value":32},{"value":223213745340416},{"value":0},{"value":223213745340416},{"value":13299969296},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667717412},"cpsr":{"value":4096},"fp":{"value":13299968640},"sp":{"value":13299968560},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667641332},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":231},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":231},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":231},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":231},{"imageOffset":66741424,"imageIndex":169},{"imageOffset":66197236,"imageIndex":169},{"imageOffset":66429892,"imageIndex":169},{"imageOffset":66432404,"imageIndex":169},{"imageOffset":66432060,"imageIndex":169},{"imageOffset":66431816,"imageIndex":169},{"imageOffset":66589352,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}]},{"id":1165983,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":224313256968192},{"value":0},{"value":224313256968192},{"value":32},{"value":0},{"value":18446744073709550527},{"value":52227},{"value":0},{"value":1},{"value":52227},{"value":52739},{"value":1},{"value":1},{"value":18446744073709551569},{"value":13308391424},{"value":0},{"value":0},{"value":32},{"value":224313256968192},{"value":0},{"value":224313256968192},{"value":13308390480},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667717412},"cpsr":{"value":4096},"fp":{"value":13308389824},"sp":{"value":13308389744},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667641332},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":231},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":231},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":231},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":231},{"imageOffset":66741424,"imageIndex":169},{"imageOffset":66197236,"imageIndex":169},{"imageOffset":66197084,"imageIndex":169},{"imageOffset":65870644,"imageIndex":169},{"imageOffset":66336288,"imageIndex":169},{"imageOffset":66064512,"imageIndex":169},{"imageOffset":66483648,"imageIndex":169},{"imageOffset":66484032,"imageIndex":169},{"imageOffset":66589352,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}]},{"id":1165984,"name":"VizCompositorThread","threadState":{"x":[{"value":268451845},{"value":17179869442},{"value":0},{"value":370548303462400},{"value":0},{"value":370548303462400},{"value":32},{"value":13},{"value":18446744073709550527},{"value":86275},{"value":0},{"value":1},{"value":86275},{"value":86531},{"value":1},{"value":1},{"value":18446744073709551569},{"value":13316812800},{"value":0},{"value":13},{"value":32},{"value":370548303462400},{"value":0},{"value":370548303462400},{"value":13316811872},{"value":0},{"value":17179870466},{"value":17179869442},{"value":1282}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667717412},"cpsr":{"value":4096},"fp":{"value":13316811216},"sp":{"value":13316811136},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667641332},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":231},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":231},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":231},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":231},{"imageOffset":66741424,"imageIndex":169},{"imageOffset":66197236,"imageIndex":169},{"imageOffset":65870544,"imageIndex":169},{"imageOffset":66336288,"imageIndex":169},{"imageOffset":66064512,"imageIndex":169},{"imageOffset":66483648,"imageIndex":169},{"imageOffset":66484032,"imageIndex":169},{"imageOffset":66589352,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}]},{"id":1165985,"name":"NetworkService","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553166868928},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":9223372036854775807},{"value":71205217625},{"value":13629492208},{"value":86019},{"value":1},{"value":1},{"value":369},{"value":13325234176},{"value":0},{"value":5500602008},{"value":5390517728},{"value":0},{"value":13325233520},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":13522835896},"cpsr":{"value":2684358656},"fp":{"value":13325233504},"sp":{"value":13325233440},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667690316},"far":{"value":0}},"frames":[{"imageOffset":53580,"symbol":"kevent64","symbolLocation":8,"imageIndex":231},{"imageOffset":66705848,"imageIndex":169},{"imageOffset":66705328,"imageIndex":169},{"imageOffset":66336288,"imageIndex":169},{"imageOffset":66064512,"imageIndex":169},{"imageOffset":66483648,"imageIndex":169},{"imageOffset":66484032,"imageIndex":169},{"imageOffset":66589352,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}]},{"id":1165986,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":366150256951296},{"value":0},{"value":366150256951296},{"value":32},{"value":0},{"value":18446744073709550527},{"value":85251},{"value":0},{"value":1},{"value":85251},{"value":67587},{"value":1},{"value":1},{"value":18446744073709551569},{"value":13333655552},{"value":0},{"value":0},{"value":32},{"value":366150256951296},{"value":0},{"value":366150256951296},{"value":13333654608},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667717412},"cpsr":{"value":4096},"fp":{"value":13333653952},"sp":{"value":13333653872},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667641332},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":231},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":231},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":231},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":231},{"imageOffset":66741424,"imageIndex":169},{"imageOffset":66197236,"imageIndex":169},{"imageOffset":66197084,"imageIndex":169},{"imageOffset":65870644,"imageIndex":169},{"imageOffset":66336288,"imageIndex":169},{"imageOffset":66064512,"imageIndex":169},{"imageOffset":66483648,"imageIndex":169},{"imageOffset":66484032,"imageIndex":169},{"imageOffset":66589352,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}]},{"id":1165987,"name":"ThreadPoolSingleThreadForegroundBlocking1","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":293582489518080},{"value":0},{"value":293582489518080},{"value":32},{"value":0},{"value":18446744073709550527},{"value":68355},{"value":0},{"value":1},{"value":68355},{"value":0},{"value":72057602447702513,"symbolLocation":72057594037927937,"symbol":"OBJC_CLASS_$_NSAutoreleasePool"},{"value":8409774576,"symbolLocation":0,"symbol":"OBJC_CLASS_$_NSAutoreleasePool"},{"value":18446744073709551569},{"value":8581366424},{"value":0},{"value":0},{"value":32},{"value":293582489518080},{"value":0},{"value":293582489518080},{"value":13342076176},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667717412},"cpsr":{"value":4096},"fp":{"value":13342075520},"sp":{"value":13342075440},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667641332},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":231},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":231},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":231},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":231},{"imageOffset":66741424,"imageIndex":169},{"imageOffset":66197236,"imageIndex":169},{"imageOffset":66429892,"imageIndex":169},{"imageOffset":66433464,"imageIndex":169},{"imageOffset":66432104,"imageIndex":169},{"imageOffset":66431804,"imageIndex":169},{"imageOffset":66589352,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}]},{"id":1166008,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":346359047651328},{"value":0},{"value":346359047651328},{"value":32},{"value":0},{"value":18446744073709550527},{"value":80643},{"value":0},{"value":1},{"value":80643},{"value":75011},{"value":1},{"value":1},{"value":18446744073709551569},{"value":14196977664},{"value":0},{"value":0},{"value":32},{"value":346359047651328},{"value":0},{"value":346359047651328},{"value":14196976720},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667717412},"cpsr":{"value":4096},"fp":{"value":14196976064},"sp":{"value":14196975984},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667641332},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":231},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":231},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":231},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":231},{"imageOffset":66741424,"imageIndex":169},{"imageOffset":66197236,"imageIndex":169},{"imageOffset":66197084,"imageIndex":169},{"imageOffset":65870644,"imageIndex":169},{"imageOffset":66336288,"imageIndex":169},{"imageOffset":66064512,"imageIndex":169},{"imageOffset":66483648,"imageIndex":169},{"imageOffset":66484032,"imageIndex":169},{"imageOffset":66589352,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}]},{"id":1166025,"name":"MemoryInfra","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":440917047640064},{"value":0},{"value":440917047640064},{"value":32},{"value":0},{"value":18446744073709550527},{"value":102659},{"value":0},{"value":1},{"value":102659},{"value":102147},{"value":1},{"value":1},{"value":18446744073709551569},{"value":14621356032},{"value":0},{"value":0},{"value":32},{"value":440917047640064},{"value":0},{"value":440917047640064},{"value":14621355088},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667717412},"cpsr":{"value":4096},"fp":{"value":14621354432},"sp":{"value":14621354352},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667641332},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":231},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":231},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":231},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":231},{"imageOffset":66741424,"imageIndex":169},{"imageOffset":66197236,"imageIndex":169},{"imageOffset":66197084,"imageIndex":169},{"imageOffset":65870644,"imageIndex":169},{"imageOffset":66336288,"imageIndex":169},{"imageOffset":66064512,"imageIndex":169},{"imageOffset":66483648,"imageIndex":169},{"imageOffset":66484032,"imageIndex":169},{"imageOffset":66589352,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}]},{"id":1166026,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking2","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":439817536012288},{"value":0},{"value":439817536012288},{"value":32},{"value":0},{"value":18446744073709550527},{"value":102403},{"value":0},{"value":1},{"value":102403},{"value":2045},{"value":2349490185},{"value":9},{"value":18446744073709551569},{"value":679936},{"value":0},{"value":0},{"value":32},{"value":439817536012288},{"value":0},{"value":439817536012288},{"value":14629776656},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667717412},"cpsr":{"value":4096},"fp":{"value":14629776000},"sp":{"value":14629775920},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667641332},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":231},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":231},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":231},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":231},{"imageOffset":66741424,"imageIndex":169},{"imageOffset":66197236,"imageIndex":169},{"imageOffset":66429892,"imageIndex":169},{"imageOffset":66432404,"imageIndex":169},{"imageOffset":66431928,"imageIndex":169},{"imageOffset":66431840,"imageIndex":169},{"imageOffset":66589352,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}]},{"id":1166039,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":209},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":51968},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6096973512},{"value":0},{"value":4584824872,"symbolLocation":40,"symbol":"thread_status"},{"value":1099511628034},{"value":256},{"value":0},{"value":256},{"value":1099511628032},{"value":305},{"value":8581000168},{"value":0},{"value":4584824848,"symbolLocation":16,"symbol":"thread_status"},{"value":4584824912,"symbolLocation":80,"symbol":"thread_status"},{"value":6096974048},{"value":0},{"value":0},{"value":51968},{"value":51969},{"value":52224},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":6096973632},"sp":{"value":6096973488},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166040,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":209},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":51968},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6097546952},{"value":0},{"value":4584825000,"symbolLocation":168,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":4584824976,"symbolLocation":144,"symbol":"thread_status"},{"value":4584825040,"symbolLocation":208,"symbol":"thread_status"},{"value":6097547488},{"value":0},{"value":0},{"value":51968},{"value":51969},{"value":52224},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":6097547072},"sp":{"value":6097546928},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166041,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":209},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6098120392},{"value":0},{"value":4584825128,"symbolLocation":296,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":4584825104,"symbolLocation":272,"symbol":"thread_status"},{"value":4584825168,"symbolLocation":336,"symbol":"thread_status"},{"value":6098120928},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":6098120512},"sp":{"value":6098120368},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166042,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":209},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6098693832},{"value":0},{"value":4584825256,"symbolLocation":424,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":4584825232,"symbolLocation":400,"symbol":"thread_status"},{"value":4584825296,"symbolLocation":464,"symbol":"thread_status"},{"value":6098694368},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":6098693952},"sp":{"value":6098693808},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166043,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":209},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6099267272},{"value":0},{"value":4584825384,"symbolLocation":552,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":4584825360,"symbolLocation":528,"symbol":"thread_status"},{"value":4584825424,"symbolLocation":592,"symbol":"thread_status"},{"value":6099267808},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":6099267392},"sp":{"value":6099267248},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166044,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":209},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6099840712},{"value":0},{"value":4584825512,"symbolLocation":680,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":4584825488,"symbolLocation":656,"symbol":"thread_status"},{"value":4584825552,"symbolLocation":720,"symbol":"thread_status"},{"value":6099841248},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":6099840832},"sp":{"value":6099840688},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166045,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":209},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":6100414152},{"value":0},{"value":4584825640,"symbolLocation":808,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":4584825616,"symbolLocation":784,"symbol":"thread_status"},{"value":4584825680,"symbolLocation":848,"symbol":"thread_status"},{"value":6100414688},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":6100414272},"sp":{"value":6100414128},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166046,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":209},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14690397896},{"value":0},{"value":4584825768,"symbolLocation":936,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":4584825744,"symbolLocation":912,"symbol":"thread_status"},{"value":4584825808,"symbolLocation":976,"symbol":"thread_status"},{"value":14690398432},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14690398016},"sp":{"value":14690397872},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166047,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":209},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14718054088},{"value":0},{"value":4584825896,"symbolLocation":1064,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":4584825872,"symbolLocation":1040,"symbol":"thread_status"},{"value":4584825936,"symbolLocation":1104,"symbol":"thread_status"},{"value":14718054624},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14718054208},"sp":{"value":14718054064},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166048,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":209},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14723296968},{"value":0},{"value":4584826024,"symbolLocation":1192,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":4584826000,"symbolLocation":1168,"symbol":"thread_status"},{"value":4584826064,"symbolLocation":1232,"symbol":"thread_status"},{"value":14723297504},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14723297088},"sp":{"value":14723296944},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166049,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":209},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14723870408},{"value":0},{"value":4584826152,"symbolLocation":1320,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":4584826128,"symbolLocation":1296,"symbol":"thread_status"},{"value":4584826192,"symbolLocation":1360,"symbol":"thread_status"},{"value":14723870944},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14723870528},"sp":{"value":14723870384},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166050,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":209},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14726180552},{"value":0},{"value":4584826280,"symbolLocation":1448,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":4584826256,"symbolLocation":1424,"symbol":"thread_status"},{"value":4584826320,"symbolLocation":1488,"symbol":"thread_status"},{"value":14726181088},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14726180672},"sp":{"value":14726180528},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166051,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":209},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14726753992},{"value":0},{"value":4584826408,"symbolLocation":1576,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":4584826384,"symbolLocation":1552,"symbol":"thread_status"},{"value":4584826448,"symbolLocation":1616,"symbol":"thread_status"},{"value":14726754528},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14726754112},"sp":{"value":14726753968},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166052,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":209},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14727327432},{"value":0},{"value":4584826536,"symbolLocation":1704,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":4584826512,"symbolLocation":1680,"symbol":"thread_status"},{"value":4584826576,"symbolLocation":1744,"symbol":"thread_status"},{"value":14727327968},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14727327552},"sp":{"value":14727327408},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166053,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":209},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14727900872},{"value":0},{"value":4584826664,"symbolLocation":1832,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":4584826640,"symbolLocation":1808,"symbol":"thread_status"},{"value":4584826704,"symbolLocation":1872,"symbol":"thread_status"},{"value":14727901408},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14727900992},"sp":{"value":14727900848},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166055,"name":"com.apple.NSEventThread","threadState":{"x":[{"value":268451845},{"value":21592279046},{"value":8589934592},{"value":490429430628352},{"value":0},{"value":490429430628352},{"value":2},{"value":4294967295},{"value":18446744073709550527},{"value":114187},{"value":0},{"value":1},{"value":114187},{"value":64719},{"value":0},{"value":0},{"value":18446744073709551569},{"value":8580984336},{"value":0},{"value":4294967295},{"value":2},{"value":490429430628352},{"value":0},{"value":490429430628352},{"value":14533189736},{"value":8589934592},{"value":21592279046},{"value":21592279046},{"value":4412409862}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667717412},"cpsr":{"value":4096},"fp":{"value":14533189584},"sp":{"value":14533189504},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667641332},"far":{"value":0}},"frames":[{"imageOffset":4596,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":231},{"imageOffset":80676,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":231},{"imageOffset":40500,"symbol":"mach_msg_overwrite","symbolLocation":476,"imageIndex":231},{"imageOffset":5496,"symbol":"mach_msg","symbolLocation":24,"imageIndex":231},{"imageOffset":516184,"symbol":"__CFRunLoopServiceMachPort","symbolLocation":160,"imageIndex":238},{"imageOffset":510236,"symbol":"__CFRunLoopRun","symbolLocation":1208,"imageIndex":238},{"imageOffset":507404,"symbol":"CFRunLoopRunSpecific","symbolLocation":608,"imageIndex":238},{"imageOffset":1457332,"symbol":"_NSEventThread","symbolLocation":144,"imageIndex":235},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}]},{"id":1166077,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":74},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14547807944},{"value":0},{"value":15721812008,"symbolLocation":40,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":15721811984,"symbolLocation":16,"symbol":"thread_status"},{"value":15721812048,"symbolLocation":80,"symbol":"thread_status"},{"value":14547808480},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":15721746432,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14547808064},"sp":{"value":14547807920},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166078,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":74},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14549364424},{"value":0},{"value":15721812136,"symbolLocation":168,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":15721812112,"symbolLocation":144,"symbol":"thread_status"},{"value":15721812176,"symbolLocation":208,"symbol":"thread_status"},{"value":14549364960},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":15721746432,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14549364544},"sp":{"value":14549364400},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166079,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":74},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14549937864},{"value":0},{"value":15721812264,"symbolLocation":296,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":15721812240,"symbolLocation":272,"symbol":"thread_status"},{"value":15721812304,"symbolLocation":336,"symbol":"thread_status"},{"value":14549938400},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":15721746432,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14549937984},"sp":{"value":14549937840},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166080,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":74},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14550511304},{"value":0},{"value":15721812392,"symbolLocation":424,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":15721812368,"symbolLocation":400,"symbol":"thread_status"},{"value":15721812432,"symbolLocation":464,"symbol":"thread_status"},{"value":14550511840},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":15721746432,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14550511424},"sp":{"value":14550511280},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166081,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":74},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14551084744},{"value":0},{"value":15721812520,"symbolLocation":552,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":15721812496,"symbolLocation":528,"symbol":"thread_status"},{"value":15721812560,"symbolLocation":592,"symbol":"thread_status"},{"value":14551085280},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":15721746432,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14551084864},"sp":{"value":14551084720},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166082,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":74},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14551658184},{"value":0},{"value":15721812648,"symbolLocation":680,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":15721812624,"symbolLocation":656,"symbol":"thread_status"},{"value":15721812688,"symbolLocation":720,"symbol":"thread_status"},{"value":14551658720},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":15721746432,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14551658304},"sp":{"value":14551658160},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166083,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":74},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14552231624},{"value":0},{"value":15721812776,"symbolLocation":808,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":15721812752,"symbolLocation":784,"symbol":"thread_status"},{"value":15721812816,"symbolLocation":848,"symbol":"thread_status"},{"value":14552232160},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":15721746432,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14552231744},"sp":{"value":14552231600},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166084,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":74},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14552805064},{"value":0},{"value":15721812904,"symbolLocation":936,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":15721812880,"symbolLocation":912,"symbol":"thread_status"},{"value":15721812944,"symbolLocation":976,"symbol":"thread_status"},{"value":14552805600},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":15721746432,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14552805184},"sp":{"value":14552805040},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166085,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":74},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14553378504},{"value":0},{"value":15721813032,"symbolLocation":1064,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":15721813008,"symbolLocation":1040,"symbol":"thread_status"},{"value":15721813072,"symbolLocation":1104,"symbol":"thread_status"},{"value":14553379040},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":15721746432,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14553378624},"sp":{"value":14553378480},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166086,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":74},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14553951944},{"value":0},{"value":15721813160,"symbolLocation":1192,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":15721813136,"symbolLocation":1168,"symbol":"thread_status"},{"value":15721813200,"symbolLocation":1232,"symbol":"thread_status"},{"value":14553952480},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":15721746432,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14553952064},"sp":{"value":14553951920},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166087,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":74},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14554525384},{"value":0},{"value":15721813288,"symbolLocation":1320,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":15721813264,"symbolLocation":1296,"symbol":"thread_status"},{"value":15721813328,"symbolLocation":1360,"symbol":"thread_status"},{"value":14554525920},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":15721746432,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14554525504},"sp":{"value":14554525360},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166088,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":74},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14555098824},{"value":0},{"value":15721813416,"symbolLocation":1448,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":15721813392,"symbolLocation":1424,"symbol":"thread_status"},{"value":15721813456,"symbolLocation":1488,"symbol":"thread_status"},{"value":14555099360},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":15721746432,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14555098944},"sp":{"value":14555098800},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166089,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":74},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14555672264},{"value":0},{"value":15721813544,"symbolLocation":1576,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":15721813520,"symbolLocation":1552,"symbol":"thread_status"},{"value":15721813584,"symbolLocation":1616,"symbol":"thread_status"},{"value":14555672800},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":15721746432,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14555672384},"sp":{"value":14555672240},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166090,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":74},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14556245704},{"value":0},{"value":15721813672,"symbolLocation":1704,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":15721813648,"symbolLocation":1680,"symbol":"thread_status"},{"value":15721813712,"symbolLocation":1744,"symbol":"thread_status"},{"value":14556246240},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":15721746432,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14556245824},"sp":{"value":14556245680},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166091,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":1512200,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":74},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":14556819144},{"value":0},{"value":15721813800,"symbolLocation":1832,"symbol":"thread_status"},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":15721813776,"symbolLocation":1808,"symbol":"thread_status"},{"value":15721813840,"symbolLocation":1872,"symbol":"thread_status"},{"value":14556819680},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":15721746432,"symbolLocation":32,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":14556819264},"sp":{"value":14556819120},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166141,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":242},{"imageOffset":95156600,"imageIndex":169},{"imageOffset":95160968,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":4},{"value":0},{"value":4352},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":17002737320},{"value":0},{"value":105553161536968},{"value":16492674420482},{"value":3840},{"value":0},{"value":3840},{"value":16492674420480},{"value":305},{"value":8581000168},{"value":0},{"value":105553161536944},{"value":105553161537008},{"value":17002737888},{"value":0},{"value":0},{"value":4352},{"value":4352},{"value":8448},{"value":18446744073709551615},{"value":105553156066136}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":17002737440},"sp":{"value":17002737296},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166142,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":242},{"imageOffset":95156600,"imageIndex":169},{"imageOffset":95160968,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":4},{"value":0},{"value":4608},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":17003310760},{"value":0},{"value":105553161536968},{"value":16492674420482},{"value":3840},{"value":0},{"value":3840},{"value":16492674420480},{"value":305},{"value":8581000168},{"value":0},{"value":105553161536944},{"value":105553161537008},{"value":17003311328},{"value":0},{"value":0},{"value":4608},{"value":4608},{"value":8704},{"value":18446744073709551615},{"value":105553152721400}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":17003310880},"sp":{"value":17003310736},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166143,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":242},{"imageOffset":95156600,"imageIndex":169},{"imageOffset":95160968,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":4},{"value":0},{"value":4864},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":17003884200},{"value":0},{"value":105553161536968},{"value":16492674420482},{"value":3840},{"value":0},{"value":3840},{"value":16492674420480},{"value":305},{"value":8581000168},{"value":0},{"value":105553161536944},{"value":105553161537008},{"value":17003884768},{"value":0},{"value":0},{"value":4864},{"value":4864},{"value":8960},{"value":18446744073709551615},{"value":105553152721560}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":17003884320},"sp":{"value":17003884176},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166144,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":242},{"imageOffset":95156600,"imageIndex":169},{"imageOffset":95160968,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":4},{"value":0},{"value":5632},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":17004457640},{"value":0},{"value":105553161536968},{"value":16492674420482},{"value":3840},{"value":0},{"value":3840},{"value":16492674420480},{"value":305},{"value":8581000168},{"value":0},{"value":105553161536944},{"value":105553161537008},{"value":17004458208},{"value":0},{"value":0},{"value":5632},{"value":5632},{"value":9728},{"value":18446744073709551615},{"value":105553152721720}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":17004457760},"sp":{"value":17004457616},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166145,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":242},{"imageOffset":95156600,"imageIndex":169},{"imageOffset":95160968,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":4},{"value":0},{"value":5120},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":17005031080},{"value":0},{"value":105553161536968},{"value":16492674420482},{"value":3840},{"value":0},{"value":3840},{"value":16492674420480},{"value":305},{"value":8581000168},{"value":0},{"value":105553161536944},{"value":105553161537008},{"value":17005031648},{"value":0},{"value":0},{"value":5120},{"value":5120},{"value":9216},{"value":18446744073709551615},{"value":105553152721400}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":17005031200},"sp":{"value":17005031056},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166146,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":242},{"imageOffset":95156600,"imageIndex":169},{"imageOffset":95160968,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":4},{"value":0},{"value":5888},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":17005604520},{"value":0},{"value":105553161536968},{"value":16492674420482},{"value":3840},{"value":0},{"value":3840},{"value":16492674420480},{"value":305},{"value":8581000168},{"value":0},{"value":105553161536944},{"value":105553161537008},{"value":17005605088},{"value":0},{"value":0},{"value":5888},{"value":5888},{"value":9984},{"value":18446744073709551615},{"value":105553152721720}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":17005604640},"sp":{"value":17005604496},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166147,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":242},{"imageOffset":95156600,"imageIndex":169},{"imageOffset":95160968,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":4},{"value":0},{"value":5376},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":17006177960},{"value":0},{"value":105553161536968},{"value":16492674420482},{"value":3840},{"value":0},{"value":3840},{"value":16492674420480},{"value":305},{"value":8581000168},{"value":0},{"value":105553161536944},{"value":105553161537008},{"value":17006178528},{"value":0},{"value":0},{"value":5376},{"value":5376},{"value":9472},{"value":18446744073709551615},{"value":105553152721400}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":17006178080},"sp":{"value":17006177936},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166148,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":242},{"imageOffset":95156600,"imageIndex":169},{"imageOffset":95160968,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":4},{"value":0},{"value":6144},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":17006751400},{"value":0},{"value":105553161536968},{"value":16492674420482},{"value":3840},{"value":0},{"value":3840},{"value":16492674420480},{"value":305},{"value":8581000168},{"value":0},{"value":105553161536944},{"value":105553161537008},{"value":17006751968},{"value":0},{"value":0},{"value":6144},{"value":6144},{"value":10240},{"value":18446744073709551615},{"value":105553152857432}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":17006751520},"sp":{"value":17006751376},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166149,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":242},{"imageOffset":95156600,"imageIndex":169},{"imageOffset":95160968,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":4},{"value":0},{"value":6400},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":17007324840},{"value":0},{"value":105553161536968},{"value":16492674420482},{"value":3840},{"value":0},{"value":3840},{"value":16492674420480},{"value":305},{"value":8581000168},{"value":0},{"value":105553161536944},{"value":105553161537008},{"value":17007325408},{"value":0},{"value":0},{"value":6400},{"value":6400},{"value":10496},{"value":18446744073709551615},{"value":105553152857752}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":17007324960},"sp":{"value":17007324816},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166150,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":242},{"imageOffset":95156600,"imageIndex":169},{"imageOffset":95160968,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":4},{"value":0},{"value":6656},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":17007898280},{"value":0},{"value":105553161536968},{"value":16492674420482},{"value":3840},{"value":0},{"value":3840},{"value":16492674420480},{"value":305},{"value":8581000168},{"value":0},{"value":105553161536944},{"value":105553161537008},{"value":17007898848},{"value":0},{"value":0},{"value":6656},{"value":6656},{"value":10752},{"value":18446744073709551615},{"value":105553152857432}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":17007898400},"sp":{"value":17007898256},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166151,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":242},{"imageOffset":95156600,"imageIndex":169},{"imageOffset":95160968,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":4},{"value":0},{"value":6912},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":17008471720},{"value":0},{"value":105553161536968},{"value":16492674420482},{"value":3840},{"value":0},{"value":3840},{"value":16492674420480},{"value":305},{"value":8581000168},{"value":0},{"value":105553161536944},{"value":105553161537008},{"value":17008472288},{"value":0},{"value":0},{"value":6912},{"value":6912},{"value":11008},{"value":18446744073709551615},{"value":105553222651192}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":17008471840},"sp":{"value":17008471696},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166152,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":242},{"imageOffset":95156600,"imageIndex":169},{"imageOffset":95160968,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":4},{"value":0},{"value":7168},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":17009045160},{"value":0},{"value":105553161536968},{"value":16492674420482},{"value":3840},{"value":0},{"value":3840},{"value":16492674420480},{"value":305},{"value":8581000168},{"value":0},{"value":105553161536944},{"value":105553161537008},{"value":17009045728},{"value":0},{"value":0},{"value":7168},{"value":7168},{"value":11264},{"value":18446744073709551615},{"value":105553222655352}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":17009045280},"sp":{"value":17009045136},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166153,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":242},{"imageOffset":95156600,"imageIndex":169},{"imageOffset":95160968,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":4},{"value":0},{"value":7424},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":17009618600},{"value":0},{"value":105553161536968},{"value":16492674420482},{"value":3840},{"value":0},{"value":3840},{"value":16492674420480},{"value":305},{"value":8581000168},{"value":0},{"value":105553161536944},{"value":105553161537008},{"value":17009619168},{"value":0},{"value":0},{"value":7424},{"value":7424},{"value":11520},{"value":18446744073709551615},{"value":105553222256216}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":17009618720},"sp":{"value":17009618576},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166154,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":242},{"imageOffset":95156600,"imageIndex":169},{"imageOffset":95160968,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":4},{"value":0},{"value":7680},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":17010192040},{"value":0},{"value":105553161536968},{"value":16492674420482},{"value":3840},{"value":0},{"value":3840},{"value":16492674420480},{"value":305},{"value":8581000168},{"value":0},{"value":105553161536944},{"value":105553161537008},{"value":17010192608},{"value":0},{"value":0},{"value":7680},{"value":7680},{"value":11776},{"value":18446744073709551615},{"value":105553222774680}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":17010192160},"sp":{"value":17010192016},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166155,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":242},{"imageOffset":95156600,"imageIndex":169},{"imageOffset":95160968,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":4},{"value":0},{"value":7936},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":17010765480},{"value":0},{"value":105553161536968},{"value":16492674420482},{"value":3840},{"value":0},{"value":3840},{"value":16492674420480},{"value":305},{"value":8581000168},{"value":0},{"value":105553161536944},{"value":105553161537008},{"value":17010766048},{"value":0},{"value":0},{"value":7936},{"value":7936},{"value":12032},{"value":18446744073709551615},{"value":105553222872824}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":17010765600},"sp":{"value":17010765456},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1166156,"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":68372,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":28,"imageIndex":242},{"imageOffset":95156600,"imageIndex":169},{"imageOffset":95160968,"imageIndex":169},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}],"threadState":{"x":[{"value":260},{"value":0},{"value":8192},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":17011338920},{"value":0},{"value":105553161536968},{"value":16492674420482},{"value":3840},{"value":0},{"value":3840},{"value":16492674420480},{"value":305},{"value":8581000168},{"value":0},{"value":105553161536944},{"value":105553161537008},{"value":17011339488},{"value":0},{"value":0},{"value":8192},{"value":8192},{"value":12288},{"value":18446744073709551615},{"value":105553222208504}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":17011339040},"sp":{"value":17011338896},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}}},{"id":1194597,"name":"QFileInfoGatherer","threadState":{"x":[{"value":260},{"value":0},{"value":1536},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":13380119944},{"value":0},{"value":105553179094808},{"value":2},{"value":0},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8581000168},{"value":0},{"value":105553179094784},{"value":105553179094848},{"value":13380120800},{"value":0},{"value":0},{"value":1536},{"value":1537},{"value":1792},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6667908444},"cpsr":{"value":1610616832},"fp":{"value":13380120064},"sp":{"value":13380119920},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667655660},"far":{"value":0}},"frames":[{"imageOffset":18924,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":231},{"imageOffset":30044,"symbol":"_pthread_cond_wait","symbolLocation":1228,"imageIndex":232},{"imageOffset":2091016,"imageIndex":186},{"imageOffset":2090828,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":108,"imageIndex":186},{"imageOffset":4204344,"symbol":"QFileInfoGatherer::run()","symbolLocation":136,"imageIndex":181},{"imageOffset":2051468,"imageIndex":186},{"imageOffset":28564,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":232},{"imageOffset":7476,"symbol":"thread_start","symbolLocation":8,"imageIndex":232}]},{"id":1260734,"frames":[{"imageOffset":7456,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":232}],"threadState":{"x":[{"value":13356019712},{"value":182683},{"value":13355483136},{"value":0},{"value":409602},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":13356019712},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667885856},"far":{"value":0}}},{"id":1262310,"frames":[{"imageOffset":7456,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":232}],"threadState":{"x":[{"value":13253341184},{"value":150423},{"value":13252804608},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":13253341184},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6667885856},"far":{"value":0}}}],
"usedImages" : [
{
"source" : "P",
"arch" : "arm64",
"base" : 6173917184,
"size" : 16384,
"uuid" : "802f0c32-e7ad-3a81-ac8d-ae72c0022ae6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/psutil\/_psutil_posix.abi3.so",
"name" : "_psutil_posix.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13237043200,
"size" : 32768,
"uuid" : "2c043e84-38d8-33d9-a9a4-ff18ae1f885f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/psutil\/_psutil_osx.abi3.so",
"name" : "_psutil_osx.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13239828480,
"size" : 16384,
"uuid" : "7fa9402a-4243-3f27-8c0f-0cd731e4b0f7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_webp.cpython-311-darwin.so",
"name" : "_webp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13356040192,
"size" : 425984,
"uuid" : "5e2405cb-060f-3020-addd-3dba619322b1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libwebp.7.dylib",
"name" : "libwebp.7.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13238468608,
"size" : 49152,
"uuid" : "c9d935e3-fdd4-3748-bfab-8b85a51f8d5c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libwebpmux.3.dylib",
"name" : "libwebpmux.3.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13238583296,
"size" : 16384,
"uuid" : "a8f73dab-eb72-3995-a659-2d45744677ca",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libwebpdemux.2.dylib",
"name" : "libwebpdemux.2.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13246218240,
"size" : 32768,
"uuid" : "6a5af239-4d72-3b70-a593-d5aaa357a355",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libsharpyuv.0.dylib",
"name" : "libsharpyuv.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13238272000,
"size" : 16384,
"uuid" : "90797215-312d-32b5-979a-1ad6584ca6ca",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/mmap.cpython-311-darwin.so",
"name" : "mmap.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13245710336,
"size" : 32768,
"uuid" : "f6112c45-e8b3-3787-a9ab-c7209e77530f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imagingmath.cpython-311-darwin.so",
"name" : "_imagingmath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6169427968,
"size" : 16384,
"uuid" : "c02d0239-f594-35e0-be90-8232dff32cb1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/coulombic\/_esp.cpython-311-darwin.so",
"name" : "_esp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6169542656,
"size" : 65536,
"uuid" : "4a455d48-cbb8-33f8-88b3-a251699453d9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/chem_group\/_chem_group.cpython-311-darwin.so",
"name" : "_chem_group.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6168461312,
"size" : 49152,
"uuid" : "cc4a9ffb-4104-3e1b-9c8b-fe1daca40ded",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atom_search\/ast.cpython-311-darwin.so",
"name" : "ast.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 16948346880,
"CFBundleShortVersionString" : "1.0",
"CFBundleIdentifier" : "com.apple.TextInputUIMac.axbundle",
"size" : 16384,
"uuid" : "bf9ebd78-e64c-399b-92cd-f74f87137955",
"path" : "\/System\/Library\/Accessibility\/BundlesBase\/com.apple.TextInputUIMac.axbundle\/Versions\/A\/com.apple.TextInputUIMac",
"name" : "com.apple.TextInputUIMac",
"CFBundleVersion" : "258.10"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 16948019200,
"CFBundleShortVersionString" : "1.0",
"CFBundleIdentifier" : "com.apple.imageKit.axbundle",
"size" : 16384,
"uuid" : "b418c10f-9b5b-3676-8180-9418d9ec346c",
"path" : "\/System\/Library\/Accessibility\/BundlesBase\/com.apple.imageKit.axbundle\/Versions\/A\/com.apple.imageKit",
"name" : "com.apple.imageKit",
"CFBundleVersion" : "258.10"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 16948166656,
"CFBundleShortVersionString" : "1.0",
"CFBundleIdentifier" : "com.apple.VisionKitCore.axbundle",
"size" : 49152,
"uuid" : "6d07bcf4-63f5-3662-a8a6-f8ebb9f8cacd",
"path" : "\/System\/Library\/Accessibility\/BundlesBase\/com.apple.VisionKitCore.axbundle\/Versions\/A\/com.apple.VisionKitCore",
"name" : "com.apple.VisionKitCore",
"CFBundleVersion" : "258.10"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 16947576832,
"CFBundleShortVersionString" : "1.0",
"CFBundleIdentifier" : "com.apple.securityinterface.axbundle",
"size" : 16384,
"uuid" : "0c9eef6b-b84d-3950-82c7-04c5092da1ec",
"path" : "\/System\/Library\/Accessibility\/BundlesBase\/com.apple.securityinterface.axbundle\/Versions\/A\/com.apple.securityinterface",
"name" : "com.apple.securityinterface",
"CFBundleVersion" : "258.10"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 16947740672,
"CFBundleShortVersionString" : "1.0",
"CFBundleIdentifier" : "com.apple.AnnotationKit.axbundle",
"size" : 16384,
"uuid" : "87b4c641-55a5-36dd-a7da-811720686d67",
"path" : "\/System\/Library\/Accessibility\/BundlesBase\/com.apple.AnnotationKit.axbundle\/Versions\/A\/com.apple.AnnotationKit",
"name" : "com.apple.AnnotationKit",
"CFBundleVersion" : "258.10"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 16922591232,
"CFBundleShortVersionString" : "1.0",
"CFBundleIdentifier" : "com.apple.AppKit.axbundle",
"size" : 32768,
"uuid" : "02faa037-51c5-332e-8ad6-716ae6bb0028",
"path" : "\/System\/Library\/Accessibility\/BundlesBase\/com.apple.AppKit.axbundle\/Versions\/A\/com.apple.AppKit",
"name" : "com.apple.AppKit",
"CFBundleVersion" : "258.10"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15725182976,
"size" : 32768,
"uuid" : "f906193b-4e10-324e-a5c0-a4654cdab0fa",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_direct.cpython-311-darwin.so",
"name" : "_direct.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15727329280,
"size" : 622592,
"uuid" : "007d1ea9-ff92-3a95-a349-88a02fee6c1a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/transform\/_rotation.cpython-311-darwin.so",
"name" : "_rotation.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15728541696,
"size" : 425984,
"uuid" : "ec26862d-9fed-365c-b4cf-50ccca4f3cb5",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/_distance_pybind.cpython-311-darwin.so",
"name" : "_distance_pybind.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15724380160,
"size" : 65536,
"uuid" : "50f0bd5c-226e-3dc4-9dab-e8605a583a82",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/special\/_ellip_harm_2.cpython-311-darwin.so",
"name" : "_ellip_harm_2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15724576768,
"size" : 32768,
"uuid" : "02ab43e3-c90b-3f6f-8260-f762c68bb64f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/special\/_comb.cpython-311-darwin.so",
"name" : "_comb.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15724920832,
"size" : 180224,
"uuid" : "2b8c8172-7dfa-3482-81b3-ece648557d2e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/special\/_specfun.cpython-311-darwin.so",
"name" : "_specfun.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15434792960,
"size" : 131072,
"uuid" : "d9f2ce41-1b87-322b-86e9-071b54ebbf6f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/special\/_cdflib.cpython-311-darwin.so",
"name" : "_cdflib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15392587776,
"size" : 327680,
"uuid" : "515122a4-5c70-3c05-9078-3f59e07e3c50",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/special\/_ufuncs_cxx.cpython-311-darwin.so",
"name" : "_ufuncs_cxx.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15723331584,
"size" : 884736,
"uuid" : "00874c88-4946-3674-84a1-f19ce5d157d3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/special\/_ufuncs.cpython-311-darwin.so",
"name" : "_ufuncs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15390851072,
"size" : 131072,
"uuid" : "e1b12eac-a12b-3dd3-a8ac-e3418ea893bc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/_hausdorff.cpython-311-darwin.so",
"name" : "_hausdorff.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15390425088,
"size" : 81920,
"uuid" : "e3264c87-020d-3205-a273-07feadce8b5f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/_distance_wrap.cpython-311-darwin.so",
"name" : "_distance_wrap.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15390212096,
"size" : 131072,
"uuid" : "cb85eedc-9bda-37d1-b859-80f0ccf3b2a9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/_voronoi.cpython-311-darwin.so",
"name" : "_voronoi.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15725346816,
"size" : 786432,
"uuid" : "b469142c-7ce4-39d3-a13e-177075708292",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/_qhull.cpython-311-darwin.so",
"name" : "_qhull.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15391883264,
"size" : 540672,
"uuid" : "3788c474-d98f-3b6f-8c6b-21eecaf4aaed",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/spatial\/_ckdtree.cpython-311-darwin.so",
"name" : "_ckdtree.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15390638080,
"size" : 98304,
"uuid" : "66771e8a-5743-3e31-8f15-07e5298ca24e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_pava_pybind.cpython-311-darwin.so",
"name" : "_pava_pybind.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14724186112,
"size" : 32768,
"uuid" : "86da86e5-84dd-3853-831c-5d556bbe2ad8",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_lsap.cpython-311-darwin.so",
"name" : "_lsap.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15391571968,
"size" : 212992,
"uuid" : "6742962d-3fba-35a4-bc2c-4108128629f7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_bglu_dense.cpython-311-darwin.so",
"name" : "_bglu_dense.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15391129600,
"size" : 294912,
"uuid" : "7985d8c8-9c90-3ffb-994f-d2b0604f1672",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_interpolative.cpython-311-darwin.so",
"name" : "_interpolative.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14718386176,
"size" : 32768,
"uuid" : "d7ca6dfb-323d-3817-939c-cc9492450f62",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_highs\/_highs_constants.cpython-311-darwin.so",
"name" : "_highs_constants.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15386935296,
"size" : 2686976,
"uuid" : "5d9d5ff4-3151-325e-8ac2-355f9d5f3fca",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_highs\/_highs_wrapper.cpython-311-darwin.so",
"name" : "_highs_wrapper.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14596374528,
"size" : 16384,
"uuid" : "c4494bd1-af0e-33f6-b7f3-2b7b0612c0b0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_zeros.cpython-311-darwin.so",
"name" : "_zeros.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15385296896,
"size" : 131072,
"uuid" : "8a89bec1-d1a4-33e9-9187-c38106706c32",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_lsq\/givens_elimination.cpython-311-darwin.so",
"name" : "givens_elimination.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14597668864,
"size" : 49152,
"uuid" : "2db39f4b-99bb-3f4e-9996-bddb979039df",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_minpack.cpython-311-darwin.so",
"name" : "_minpack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14690418688,
"size" : 65536,
"uuid" : "3a2c5419-c0ec-3022-abd3-fd795ae0d0c0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_slsqp.cpython-311-darwin.so",
"name" : "_slsqp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14653095936,
"size" : 65536,
"uuid" : "7150b480-44ee-3696-b0d1-a0df0c832bc6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_cobyla.cpython-311-darwin.so",
"name" : "_cobyla.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14760574976,
"size" : 98304,
"uuid" : "e7fe5903-b1ea-3b84-b16b-58b34a02db21",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_moduleTNC.cpython-311-darwin.so",
"name" : "_moduleTNC.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14637957120,
"size" : 81920,
"uuid" : "d74c2d2e-2f6a-3c1d-8f3d-9865ac7d0dfd",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_lbfgsb.cpython-311-darwin.so",
"name" : "_lbfgsb.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14632943616,
"size" : 49152,
"uuid" : "95ae3b21-ed69-356a-af94-721dbabc13aa",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/_lib\/messagestream.cpython-311-darwin.so",
"name" : "messagestream.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15384985600,
"size" : 212992,
"uuid" : "386d0828-2ee3-33f9-96f6-c70cd5409a01",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_trlib\/_trlib.cpython-311-darwin.so",
"name" : "_trlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14602092544,
"size" : 49152,
"uuid" : "d1dadc27-43dc-3295-83f6-418655ea0831",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_group_columns.cpython-311-darwin.so",
"name" : "_group_columns.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14539407360,
"size" : 32768,
"uuid" : "d92e36df-c43c-3e79-bd30-e4ba1ec30fed",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/optimize\/_minpack2.cpython-311-darwin.so",
"name" : "_minpack2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15385591808,
"size" : 196608,
"uuid" : "d0e749d7-3e84-3b02-87a4-b01aab2a95a7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_reordering.cpython-311-darwin.so",
"name" : "_reordering.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14718074880,
"size" : 212992,
"uuid" : "efc0a490-985a-32ac-a3d5-d0386f6b8fd6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_matching.cpython-311-darwin.so",
"name" : "_matching.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14723891200,
"size" : 196608,
"uuid" : "4a8061e3-43df-32e1-a08e-98c3aa52a656",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_flow.cpython-311-darwin.so",
"name" : "_flow.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14680866816,
"size" : 147456,
"uuid" : "f0320be7-a3d5-38ea-923a-9be42392d2e1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_min_spanning_tree.cpython-311-darwin.so",
"name" : "_min_spanning_tree.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14728544256,
"size" : 393216,
"uuid" : "1290dc82-206f-3966-8be8-33afff597b3b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_traversal.cpython-311-darwin.so",
"name" : "_traversal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14637744128,
"size" : 131072,
"uuid" : "855d66b3-e4b5-30b0-9f95-66ea6728165e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_tools.cpython-311-darwin.so",
"name" : "_tools.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14654308352,
"size" : 294912,
"uuid" : "75bc4940-2d7b-34ee-874f-203f402cd9e4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/csgraph\/_shortest_path.cpython-311-darwin.so",
"name" : "_shortest_path.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14653603840,
"size" : 81920,
"uuid" : "0eb9ddcc-b3ae-3f68-8cc5-4f02d1db1922",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/linalg\/_propack\/_zpropack.cpython-311-darwin.so",
"name" : "_zpropack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14654013440,
"size" : 98304,
"uuid" : "15ec956f-34f7-3b2e-9aaf-d69735383e4e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/linalg\/_propack\/_cpropack.cpython-311-darwin.so",
"name" : "_cpropack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14652932096,
"size" : 81920,
"uuid" : "0b0a2cb8-6e6a-3456-9c4d-67232c45aef5",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/linalg\/_propack\/_dpropack.cpython-311-darwin.so",
"name" : "_dpropack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14557347840,
"size" : 81920,
"uuid" : "fd39e810-479d-38c6-9562-eea71124ea32",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/linalg\/_propack\/_spropack.cpython-311-darwin.so",
"name" : "_spropack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14652440576,
"size" : 360448,
"uuid" : "c105b51b-31c2-3b08-ac95-82b63f67719b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/linalg\/_eigen\/arpack\/_arpack.cpython-311-darwin.so",
"name" : "_arpack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14653243392,
"size" : 262144,
"uuid" : "ffce1129-3f35-392b-a648-d1553b20ad43",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/linalg\/_dsolve\/_superlu.cpython-311-darwin.so",
"name" : "_superlu.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14631960576,
"size" : 475136,
"uuid" : "6397b6d3-86cc-3c9b-af4d-5167320ea993",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/_csparsetools.cpython-311-darwin.so",
"name" : "_csparsetools.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14648606720,
"size" : 3260416,
"uuid" : "b81d91f7-b02d-312e-808e-c93c144f80fc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/sparse\/_sparsetools.cpython-311-darwin.so",
"name" : "_sparsetools.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14632632320,
"size" : 229376,
"uuid" : "c4fb2565-0f78-37e7-ba0a-0cafad8460c2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_decomp_update.cpython-311-darwin.so",
"name" : "_decomp_update.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14637449216,
"size" : 180224,
"uuid" : "4e3cfc9c-2a8c-338a-9fc7-ffff6aff993e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/cython_blas.cpython-311-darwin.so",
"name" : "cython_blas.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14637023232,
"size" : 327680,
"uuid" : "13289a5a-a989-30f3-acce-79d1dab885d1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_matfuncs_expm.cpython-311-darwin.so",
"name" : "_matfuncs_expm.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14597160960,
"size" : 147456,
"uuid" : "a2c0400a-cb75-3c5c-9d61-6c25be03d407",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_matfuncs_sqrtm_triu.cpython-311-darwin.so",
"name" : "_matfuncs_sqrtm_triu.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14597439488,
"size" : 147456,
"uuid" : "a1430d53-cb93-30aa-9989-635cf28c61f5",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_decomp_lu_cython.cpython-311-darwin.so",
"name" : "_decomp_lu_cython.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14631698432,
"size" : 163840,
"uuid" : "b52ae3e3-1916-3d76-b9f1-1afc9e182522",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_solve_toeplitz.cpython-311-darwin.so",
"name" : "_solve_toeplitz.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14633091072,
"size" : 458752,
"uuid" : "db3f59a6-fa54-38cb-a7f2-8cc4fe78515c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/cython_lapack.cpython-311-darwin.so",
"name" : "cython_lapack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14556839936,
"size" : 393216,
"uuid" : "aadd8daf-1938-3f6f-a9dd-992ee87e5089",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_cythonized_array_utils.cpython-311-darwin.so",
"name" : "_cythonized_array_utils.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14635302912,
"size" : 983040,
"uuid" : "91bbbbc9-a86d-3a94-a54d-35d3aa08b0a2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_flapack.cpython-311-darwin.so",
"name" : "_flapack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14548254720,
"size" : 311296,
"uuid" : "5378b8ec-f450-378d-92b9-3bcc87261ec1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/linalg\/_fblas.cpython-311-darwin.so",
"name" : "_fblas.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 15703474176,
"size" : 18235392,
"uuid" : "f1e25325-d9be-3248-a55c-48b550d2fc20",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/.dylibs\/libopenblas.0.dylib",
"name" : "libopenblas.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14629797888,
"size" : 1376256,
"uuid" : "6ac1f5f8-7aba-3124-b2f9-9b5d405fca38",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/.dylibs\/libgfortran.5.dylib",
"name" : "libgfortran.5.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14538539008,
"size" : 262144,
"uuid" : "4093e2c1-33fc-3e2d-af97-1d64ab57d588",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/.dylibs\/libquadmath.0.dylib",
"name" : "libquadmath.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14547075072,
"size" : 65536,
"uuid" : "9cdc7ef1-1289-35a2-9598-be8f4053af15",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/.dylibs\/libgcc_s.1.1.dylib",
"name" : "libgcc_s.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14546927616,
"size" : 65536,
"uuid" : "d8ceea6b-c66d-375a-8caf-c66e8c1275e6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/scipy\/_lib\/_ccallback_c.cpython-311-darwin.so",
"name" : "_ccallback_c.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6093979648,
"size" : 147456,
"uuid" : "0ee9ca02-13c3-3c35-99ec-fdcf207a8b79",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/_elementpath.cpython-311-darwin.so",
"name" : "_elementpath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14755561472,
"size" : 4096000,
"uuid" : "3c92d9be-9b63-3d45-838a-e4fd342ddf46",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/etree.cpython-311-darwin.so",
"name" : "etree.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14689550336,
"size" : 147456,
"uuid" : "96691a20-aa26-3905-98c4-0939edf5bdd4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb\/_pdbio.cpython-311-darwin.so",
"name" : "_pdbio.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14724333568,
"size" : 409600,
"uuid" : "f03f0cb6-82d1-33ee-a10b-cc8d92c14417",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/_mmcif.cpython-311-darwin.so",
"name" : "_mmcif.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14687420416,
"size" : 458752,
"uuid" : "6b6db01c-1280-3773-b08f-d693798baba7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/mmcif.cpython-311-darwin.so",
"name" : "mmcif.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6093094912,
"size" : 16384,
"uuid" : "c802abe8-4352-3827-8717-7d4c0f0892ff",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/graphics\/_graphics.cpython-311-darwin.so",
"name" : "_graphics.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6093258752,
"size" : 81920,
"uuid" : "2f167b0b-b0ab-3b3f-a99e-27fc153b427d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/_ribbons.cpython-311-darwin.so",
"name" : "_ribbons.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14611759104,
"size" : 49152,
"uuid" : "cf3da9e7-3f71-33cf-8133-69a177c7de19",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGLWidgets.abi3.so",
"name" : "QtOpenGLWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14602452992,
"size" : 49152,
"uuid" : "bca2dfd9-9c81-3013-a4e9-0505eec8b180",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGLWidgets.framework\/Versions\/A\/QtOpenGLWidgets",
"name" : "QtOpenGLWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14688141312,
"size" : 753664,
"uuid" : "b6b681ee-3078-3901-a867-0f46c38489a1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGL.abi3.so",
"name" : "QtOpenGL.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14584938496,
"size" : 131072,
"uuid" : "650aead6-ce16-39bb-9ba1-4bf9986b96d6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/msgpack\/_cmsgpack.cpython-311-darwin.so",
"name" : "_cmsgpack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14602223616,
"size" : 131072,
"uuid" : "f5aa887d-ba83-3ffc-a567-69cef02c403b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_serialize.cpython-311-darwin.so",
"name" : "_serialize.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14583758848,
"size" : 180224,
"uuid" : "87eed069-25fc-30f6-aa30-1e54859d92e2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lz4\/frame\/_frame.cpython-311-darwin.so",
"name" : "_frame.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14584791040,
"size" : 81920,
"uuid" : "d7bd530c-3353-37a6-b81f-ee3179d65811",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lz4\/_version.cpython-311-darwin.so",
"name" : "_version.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14232174592,
"size" : 49152,
"uuid" : "12c53516-421d-3f7a-a81e-95bcfdb8a3ff",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/nones_formathandler.cpython-311-darwin.so",
"name" : "nones_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 14585593856,
"size" : 81920,
"uuid" : "703104dc-b212-3b8d-9c78-4f57b3c9cb18",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/numpy_formathandler.cpython-311-darwin.so",
"name" : "numpy_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5665538048,
"size" : 16384,
"uuid" : "117d4c42-f31b-3051-a57f-edb1c3f20c84",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_mac_util.cpython-311-darwin.so",
"name" : "_mac_util.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 5665456128,
"size" : 49152,
"uuid" : "e8a1b184-0349-3c61-a119-6543eb038317",
"path" : "\/usr\/lib\/libobjc-trampolines.dylib",
"name" : "libobjc-trampolines.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5667995648,
"size" : 32768,
"uuid" : "73065b31-2315-3d94-8ece-5a8b66a743b4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacjp2.dylib",
"name" : "libqmacjp2.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5667897344,
"size" : 32768,
"uuid" : "97f0c601-577c-3e3d-9728-1b67a04a846f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtga.dylib",
"name" : "libqtga.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5667799040,
"size" : 32768,
"uuid" : "aaf72e4f-a4b5-3143-abe4-cd0b9c88e736",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqicns.dylib",
"name" : "libqicns.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5667700736,
"size" : 32768,
"uuid" : "2170e2a2-3e24-3e7d-889f-70bfe1445514",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqpdf.dylib",
"name" : "libqpdf.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13342097408,
"size" : 8011776,
"uuid" : "2297c440-bc47-3988-b508-c4f43a12de4c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPdf.framework\/Versions\/A\/QtPdf",
"name" : "QtPdf"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5667602432,
"size" : 32768,
"uuid" : "77608453-0c22-327c-909a-3e61997f035f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqsvg.dylib",
"name" : "libqsvg.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5688524800,
"size" : 229376,
"uuid" : "6ae5d9b1-7feb-31a5-b3c1-09bfbb908790",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtSvg.framework\/Versions\/A\/QtSvg",
"name" : "QtSvg"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5666570240,
"size" : 393216,
"uuid" : "d172365c-3e61-356e-841b-8eebabcb45da",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtiff.dylib",
"name" : "libqtiff.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5666062336,
"size" : 425984,
"uuid" : "faac1c6c-772a-36fc-99b1-1796fe013571",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqjpeg.dylib",
"name" : "libqjpeg.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5665964032,
"size" : 32768,
"uuid" : "df91425d-7fd1-3fc7-90c3-147cb82c19db",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacheif.dylib",
"name" : "libqmacheif.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5665865728,
"size" : 32768,
"uuid" : "0552b37d-fa94-3519-9b5c-94cb314a2cd1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqico.dylib",
"name" : "libqico.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5667078144,
"size" : 442368,
"uuid" : "d64ad34b-954b-3e65-b4b7-cb030bea2c1e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwebp.dylib",
"name" : "libqwebp.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5665767424,
"size" : 32768,
"uuid" : "dbf1d60b-d923-3193-a32e-96d3a81b9556",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwbmp.dylib",
"name" : "libqwbmp.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5665669120,
"size" : 32768,
"uuid" : "e00ce596-2864-3abf-bdff-8a38c7f22299",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqgif.dylib",
"name" : "libqgif.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5483397120,
"size" : 131072,
"uuid" : "3ef700f1-b0ef-333f-8291-6877887bedaa",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/vbo.cpython-311-darwin.so",
"name" : "vbo.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5391269888,
"size" : 49152,
"uuid" : "38eab131-624a-32cf-8d4e-374bca53e017",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/latebind.cpython-311-darwin.so",
"name" : "latebind.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5390893056,
"size" : 65536,
"uuid" : "d9a192eb-4bf9-362f-99d4-f6bc1e368b01",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/formathandler.cpython-311-darwin.so",
"name" : "formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5483003904,
"size" : 229376,
"uuid" : "33919aef-b02e-386a-8f81-a661fe002ddc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/wrapper.cpython-311-darwin.so",
"name" : "wrapper.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5490786304,
"size" : 196608,
"uuid" : "c4b0c9bc-a01b-3cf7-b16b-77f9b13b6cd9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/arraydatatype.cpython-311-darwin.so",
"name" : "arraydatatype.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5391138816,
"size" : 49152,
"uuid" : "4c5d42bf-4e9d-3c59-bf2e-303deda3aeb2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/errorchecker.cpython-311-darwin.so",
"name" : "errorchecker.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5390811136,
"size" : 16384,
"uuid" : "6ea2ba5a-5354-35d2-a092-0249bbb6d929",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5386354688,
"size" : 32768,
"uuid" : "b0eab6c4-6692-3eac-bea4-60c69e87993c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/lib\/libpdbconnect.dylib",
"name" : "libpdbconnect.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5398691840,
"size" : 114688,
"uuid" : "5d45ac62-e87c-31ae-9f9a-8bdc101f61d2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_image.cpython-311-darwin.so",
"name" : "_image.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5391941632,
"size" : 114688,
"uuid" : "7d718d62-a2e1-318a-8f9d-9b2ac2293986",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/kiwisolver\/_cext.cpython-311-darwin.so",
"name" : "_cext.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5483675648,
"size" : 589824,
"uuid" : "d33db4fb-c546-3a3f-af92-06b3acf9a005",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/ft2font.cpython-311-darwin.so",
"name" : "ft2font.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5391745024,
"size" : 114688,
"uuid" : "f78c05df-89c8-38d5-90fa-ae102328b198",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_path.cpython-311-darwin.so",
"name" : "_path.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5390729216,
"size" : 16384,
"uuid" : "fdd4ed4b-946d-3635-b962-de82abc3462a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_c_internal_utils.cpython-311-darwin.so",
"name" : "_c_internal_utils.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5389598720,
"size" : 16384,
"uuid" : "10cb0192-6e54-3232-ba83-11bac176e9df",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/termios.cpython-311-darwin.so",
"name" : "termios.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5385797632,
"size" : 376832,
"uuid" : "be0ff669-9570-3fbc-b643-583c25c53bcc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imaging.cpython-311-darwin.so",
"name" : "_imaging.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5392334848,
"size" : 688128,
"uuid" : "15feb07e-8bff-3562-a02a-8cf33732e6df",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libtiff.6.dylib",
"name" : "libtiff.6.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5393154048,
"size" : 524288,
"uuid" : "f077add4-3b80-3e03-9f5d-d46370a8594f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libjpeg.62.4.0.dylib",
"name" : "libjpeg.62.4.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5393793024,
"size" : 606208,
"uuid" : "78bac0b1-a0df-3e6e-b906-cbc961cdb354",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libopenjp2.2.5.2.dylib",
"name" : "libopenjp2.2.5.2.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5234262016,
"size" : 114688,
"uuid" : "aa2246c4-3418-31d6-b63c-b12523be454f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libz.1.3.1.dylib",
"name" : "libz.1.3.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5389303808,
"size" : 163840,
"uuid" : "72b5dc2b-0af5-32a5-8a55-1a0cc0dd14e0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libxcb.1.dylib",
"name" : "libxcb.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5391400960,
"size" : 262144,
"uuid" : "8a87fb4d-f743-3c9e-bee7-721b8d2f34ac",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/liblzma.5.dylib",
"name" : "liblzma.5.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5386518528,
"size" : 16384,
"uuid" : "55c39336-6291-32f1-a957-7d880570affd",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libXau.6.0.0.dylib",
"name" : "libXau.6.0.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5386600448,
"size" : 262144,
"uuid" : "f2c706bd-a2c4-39ce-b4c0-048c01ea0eca",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_decimal.cpython-311-darwin.so",
"name" : "_decimal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5385715712,
"size" : 16384,
"uuid" : "8eb0c267-c007-3e24-9604-1f0a78868795",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_uuid.cpython-311-darwin.so",
"name" : "_uuid.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5375934464,
"size" : 32768,
"uuid" : "7503f11a-978c-3a80-b5da-ab207a441c5e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_multibytecodec.cpython-311-darwin.so",
"name" : "_multibytecodec.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5387059200,
"size" : 1114112,
"uuid" : "5200c6a0-ccdb-3607-9947-1defdd6fb647",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/unicodedata.cpython-311-darwin.so",
"name" : "unicodedata.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5377359872,
"size" : 147456,
"uuid" : "3a5bf6ce-7cc0-327a-8ff1-52f7adac24a4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md__mypyc.cpython-311-darwin.so",
"name" : "md__mypyc.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5167251456,
"size" : 16384,
"uuid" : "89141903-d9ce-369c-b76f-2f794585b0e3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md.cpython-311-darwin.so",
"name" : "md.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5375328256,
"size" : 409600,
"uuid" : "358a0dd4-0955-30b7-a45c-561026d32a66",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/map\/_map.cpython-311-darwin.so",
"name" : "_map.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5377097728,
"size" : 147456,
"uuid" : "93458d84-c67a-3585-8201-ff7b58cc50a6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/surface\/_surface.cpython-311-darwin.so",
"name" : "_surface.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5166727168,
"size" : 49152,
"uuid" : "fe5b0329-3d3a-3bfa-a7e9-e6c0e583311e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cytmpl.cpython-311-darwin.so",
"name" : "cytmpl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5374623744,
"size" : 98304,
"uuid" : "12f930bf-d331-3ae7-88cb-fbf14c2f66f7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/tinyarray.cpython-311-darwin.so",
"name" : "tinyarray.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5373952000,
"size" : 425984,
"uuid" : "de33f8cb-88d5-3371-851a-e5de0f9689c2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cymol.cpython-311-darwin.so",
"name" : "cymol.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5374885888,
"size" : 180224,
"uuid" : "106fe191-9c12-3ced-bb2f-fa38a412daf1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/libmolc.dylib",
"name" : "libmolc.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5166645248,
"size" : 16384,
"uuid" : "0d834156-6229-3383-833b-5e4dbda14b77",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5377654784,
"size" : 1114112,
"uuid" : "fd7b00a2-d609-31e8-8ce3-7c101acdcbbe",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libatomstruct.dylib",
"name" : "libatomstruct.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5166481408,
"size" : 32768,
"uuid" : "3db66b4e-c7b2-34b6-ae7b-bb92d644ccb7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libelement.dylib",
"name" : "libelement.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5167169536,
"size" : 16384,
"uuid" : "5f3c3a7c-ae17-3758-b5c7-5e9a0d0a4a39",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libpyinstance.dylib",
"name" : "libpyinstance.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5165629440,
"size" : 32768,
"uuid" : "d197680c-26b9-3292-85bc-f61af0ff34bb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_csv.cpython-311-darwin.so",
"name" : "_csv.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5166104576,
"size" : 16384,
"uuid" : "ecf905dd-b03f-3e39-a475-0f3103f3e6d3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/grp.cpython-311-darwin.so",
"name" : "grp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5166022656,
"size" : 16384,
"uuid" : "cd5f3f7c-54a3-322d-a180-6c7b94deed82",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_scproxy.cpython-311-darwin.so",
"name" : "_scproxy.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5166940160,
"size" : 98304,
"uuid" : "5c15959b-b36d-32f8-80b0-b0558dbb9fcc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ssl.cpython-311-darwin.so",
"name" : "_ssl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5233704960,
"size" : 344064,
"uuid" : "edcc52bf-058b-3550-8a40-7e432a5ee6bb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libssl.1.1.dylib",
"name" : "libssl.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5165793280,
"size" : 16384,
"uuid" : "b3287e1f-ce2c-3c6f-bc12-deb15c14593c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_queue.cpython-311-darwin.so",
"name" : "_queue.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4962811904,
"size" : 16384,
"uuid" : "157e3710-caca-35b5-9fda-d1c4efc75429",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_heapq.cpython-311-darwin.so",
"name" : "_heapq.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5165891584,
"size" : 49152,
"uuid" : "0895ead1-fff8-3401-9c5c-5c4254ce969b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/array.cpython-311-darwin.so",
"name" : "array.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4962664448,
"size" : 65536,
"uuid" : "ff7c6b72-2303-3d40-a4fa-f3d840425be2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_socket.cpython-311-darwin.so",
"name" : "_socket.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5166202880,
"size" : 163840,
"uuid" : "78ab6dee-103a-31de-bb4e-ea5e9b694cb0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/pyexpat.cpython-311-darwin.so",
"name" : "pyexpat.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4962402304,
"size" : 147456,
"uuid" : "240cb694-5652-380e-a13f-72e024b43ffc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/styles\/libqmacstyle.dylib",
"name" : "libqmacstyle.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 4951375872,
"CFBundleShortVersionString" : "1.0",
"CFBundleIdentifier" : "com.apple.AppleMetalOpenGLRenderer",
"size" : 442368,
"uuid" : "83d94df2-aca8-3695-a3a1-bf8ca16657ac",
"path" : "\/System\/Library\/Extensions\/AppleMetalOpenGLRenderer.bundle\/Contents\/MacOS\/AppleMetalOpenGLRenderer",
"name" : "AppleMetalOpenGLRenderer",
"CFBundleVersion" : "1"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4946395136,
"size" : 638976,
"uuid" : "68fd5eb3-4cdf-3190-8b80-e5378d6b4c9d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib",
"name" : "libqcocoa.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4864344064,
"size" : 229376,
"uuid" : "5b3816f5-31a1-3950-9b9a-77d1f921188c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineCore.abi3.so",
"name" : "QtWebEngineCore.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4418256896,
"size" : 32768,
"uuid" : "a169d745-309d-33d5-a2e6-e7c4e96708be",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebChannel.abi3.so",
"name" : "QtWebChannel.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4861100032,
"size" : 163840,
"uuid" : "88b20f5e-7cfd-31bb-ac2c-68580822b362",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtPrintSupport.abi3.so",
"name" : "QtPrintSupport.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4945297408,
"size" : 491520,
"uuid" : "07f8ba95-385f-3636-aaf1-1cee596fe424",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtNetwork.abi3.so",
"name" : "QtNetwork.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4428939264,
"size" : 65536,
"uuid" : "e159845d-c85f-317e-a1d0-225a578b8d24",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineWidgets.abi3.so",
"name" : "QtWebEngineWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4428595200,
"size" : 98304,
"uuid" : "16db4b50-36fd-3e6b-a27f-a1c2f3f65a0e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineWidgets.framework\/Versions\/A\/QtWebEngineWidgets",
"name" : "QtWebEngineWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4861460480,
"size" : 278528,
"uuid" : "69a381be-74c3-3943-839e-c2710e3b1221",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPrintSupport.framework\/Versions\/A\/QtPrintSupport",
"name" : "QtPrintSupport"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13456130048,
"size" : 165756928,
"uuid" : "72eb72da-af14-3e6d-a878-889044e69fe6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
"name" : "QtWebEngineCore"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4952047616,
"size" : 3899392,
"uuid" : "cd78ea4b-fdea-35f8-9425-2acf80e29b96",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuick.framework\/Versions\/A\/QtQuick",
"name" : "QtQuick"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4860477440,
"size" : 409600,
"uuid" : "69fc8b0b-b6a0-3e08-8bac-584a6a3a93b0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGL.framework\/Versions\/A\/QtOpenGL",
"name" : "QtOpenGL"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4861935616,
"size" : 540672,
"uuid" : "054ea112-953a-32d0-a58f-bc186ae37747",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQmlModels.framework\/Versions\/A\/QtQmlModels",
"name" : "QtQmlModels"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4593532928,
"size" : 163840,
"uuid" : "bcc67564-cc1c-3017-b5f1-0b6e1b0e993c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebChannel.framework\/Versions\/A\/QtWebChannel",
"name" : "QtWebChannel"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4957470720,
"size" : 3833856,
"uuid" : "432c2bd3-2e4c-3089-b092-df3547feaafd",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQml.framework\/Versions\/A\/QtQml",
"name" : "QtQml"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4943855616,
"size" : 1081344,
"uuid" : "fed592df-e45a-3887-b02f-65e20ff51c4b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtNetwork.framework\/Versions\/A\/QtNetwork",
"name" : "QtNetwork"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4862672896,
"size" : 442368,
"uuid" : "a02974a0-e1a7-316f-8e3b-ae2e03dc4433",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPositioning.framework\/Versions\/A\/QtPositioning",
"name" : "QtPositioning"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4847796224,
"size" : 81920,
"uuid" : "55f5d063-f2ad-361c-ad8d-afc759bfeec1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuickWidgets.framework\/Versions\/A\/QtQuickWidgets",
"name" : "QtQuickWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4843421696,
"size" : 1572864,
"uuid" : "c8d7e625-2a13-3c34-9dff-b6656a6f86e7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtGui.abi3.so",
"name" : "QtGui.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4848107520,
"size" : 3112960,
"uuid" : "ee8cff87-6a5d-38d1-8403-031c9916b0fb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWidgets.abi3.so",
"name" : "QtWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4854464512,
"size" : 4554752,
"uuid" : "3f78f0e3-d0d9-3375-a27c-2906014b5fe2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets",
"name" : "QtWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4835606528,
"size" : 6537216,
"uuid" : "e1e85506-35dd-32b9-b614-7f3179359271",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui",
"name" : "QtGui"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4427939840,
"size" : 507904,
"uuid" : "7a365b1d-ddab-3dec-80b0-d21186597d32",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtDBus.framework\/Versions\/A\/QtDBus",
"name" : "QtDBus"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4426694656,
"size" : 81920,
"uuid" : "b6b22843-cb0a-3d00-952e-37e8808d2ee8",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/sip.cpython-311-darwin.so",
"name" : "sip.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 4403773440,
"CFBundleShortVersionString" : "3.0",
"CFBundleIdentifier" : "com.apple.security.csparser",
"size" : 131072,
"uuid" : "d5ba6df5-4b0f-3b49-b7e3-923347e0a7d1",
"path" : "\/System\/Library\/Frameworks\/Security.framework\/Versions\/A\/PlugIns\/csparser.bundle\/Contents\/MacOS\/csparser",
"name" : "csparser",
"CFBundleVersion" : "61123.100.169"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4831838208,
"size" : 1769472,
"uuid" : "80f789cb-18ee-3995-a59b-03dc33158c84",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtCore.abi3.so",
"name" : "QtCore.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4586749952,
"size" : 4849664,
"uuid" : "113c92ac-6022-34c0-8532-0a96c67af294",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore",
"name" : "QtCore"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4403265536,
"size" : 32768,
"uuid" : "0722922a-a378-3dee-b11b-96d1ae381b09",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_json.cpython-311-darwin.so",
"name" : "_json.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4403544064,
"size" : 114688,
"uuid" : "229d2556-e1e0-3432-9458-1636804585a5",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/geometry\/_geometry.cpython-311-darwin.so",
"name" : "_geometry.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4386586624,
"size" : 16384,
"uuid" : "5973ec29-8c62-3285-97ee-5797aef28b1c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_opcode.cpython-311-darwin.so",
"name" : "_opcode.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4415307776,
"size" : 737280,
"uuid" : "49451e8a-e3c8-3429-83d8-249e81e378cd",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_generator.cpython-311-darwin.so",
"name" : "_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4402692096,
"size" : 49152,
"uuid" : "17a4344b-3221-36c4-9019-53cc1223e124",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_sfc64.cpython-311-darwin.so",
"name" : "_sfc64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4403101696,
"size" : 81920,
"uuid" : "35fb9307-f991-3159-86db-21f6c67b9198",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_pcg64.cpython-311-darwin.so",
"name" : "_pcg64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4403396608,
"size" : 65536,
"uuid" : "d3035eea-ed0e-398a-afbe-f9a8016701db",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_philox.cpython-311-darwin.so",
"name" : "_philox.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4402249728,
"size" : 65536,
"uuid" : "7dab4595-a351-3061-861b-c426baee85b3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_mt19937.cpython-311-darwin.so",
"name" : "_mt19937.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4413145088,
"size" : 311296,
"uuid" : "0033ea49-a161-3564-b09e-6a6c3b902698",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_bounded_integers.cpython-311-darwin.so",
"name" : "_bounded_integers.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4402593792,
"size" : 32768,
"uuid" : "3206e248-2c9b-345c-98ac-8f9dfc6d639b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_blake2.cpython-311-darwin.so",
"name" : "_blake2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4402479104,
"size" : 32768,
"uuid" : "322b4be7-35a8-331a-a549-7a0297d9dd70",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_hashlib.cpython-311-darwin.so",
"name" : "_hashlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4418371584,
"size" : 1687552,
"uuid" : "59149ee6-b873-3c5d-8fed-d11966210295",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libcrypto.1.1.dylib",
"name" : "libcrypto.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4402823168,
"size" : 196608,
"uuid" : "8590d52a-d755-3ffd-8f68-f9cb638359fc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_common.cpython-311-darwin.so",
"name" : "_common.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4393631744,
"size" : 147456,
"uuid" : "377e255e-f9a4-3173-8265-a899000c5d0f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/bit_generator.cpython-311-darwin.so",
"name" : "bit_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4412407808,
"size" : 622592,
"uuid" : "05ddaab9-9d7f-3317-a3c4-5e9936fe3ceb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/mtrand.cpython-311-darwin.so",
"name" : "mtrand.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4386455552,
"size" : 65536,
"uuid" : "7b5335ce-92a1-3ae2-bde0-0e5d5641b2c9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/fft\/_pocketfft_internal.cpython-311-darwin.so",
"name" : "_pocketfft_internal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4386275328,
"size" : 98304,
"uuid" : "09f94631-f551-3559-ba88-aff49917d8fe",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/linalg\/_umath_linalg.cpython-311-darwin.so",
"name" : "_umath_linalg.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4386996224,
"size" : 81920,
"uuid" : "6c214dd2-6044-3285-949b-8d8ba72ca17b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ctypes.cpython-311-darwin.so",
"name" : "_ctypes.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4386848768,
"size" : 65536,
"uuid" : "340d4f4e-8cd4-3e24-9215-eb9235031bd3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_tests.cpython-311-darwin.so",
"name" : "_multiarray_tests.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4378853376,
"size" : 16384,
"uuid" : "c1a0a0c0-1986-3338-a63d-eb396e783c91",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_contextvars.cpython-311-darwin.so",
"name" : "_contextvars.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4386668544,
"size" : 98304,
"uuid" : "ad5b1457-a682-3233-ac84-0f75b349239d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_pickle.cpython-311-darwin.so",
"name" : "_pickle.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4387831808,
"size" : 2670592,
"uuid" : "744b099b-9156-3efd-95ee-949f9bec068e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_umath.cpython-311-darwin.so",
"name" : "_multiarray_umath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4563402752,
"size" : 21299200,
"uuid" : "9854a721-2573-3169-81ec-19ea40ce8077",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
"name" : "libopenblas64_.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4422959104,
"size" : 3522560,
"uuid" : "dd0e012a-b6de-31b1-a28e-260c7b51e595",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgfortran.5.dylib",
"name" : "libgfortran.5.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4391157760,
"size" : 311296,
"uuid" : "6d39d54b-d80e-3218-a095-b81ad0b3be90",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libquadmath.0.dylib",
"name" : "libquadmath.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4378705920,
"size" : 65536,
"uuid" : "d9875303-8f38-33d9-a0d3-ab0adff3b915",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgcc_s.1.1.dylib",
"name" : "libgcc_s.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4385144832,
"size" : 16384,
"uuid" : "6fbbcdd9-e49c-3a59-9ff0-32d41317e11c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/_arrays.cpython-311-darwin.so",
"name" : "_arrays.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4387192832,
"size" : 458752,
"uuid" : "3ef7d30f-bd93-3167-a91a-3f0a3f161d1b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/lib\/libarrays.dylib",
"name" : "libarrays.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4382556160,
"size" : 32768,
"uuid" : "d25f2f2d-a87d-3870-ad6a-3d977d50c9ca",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/select.cpython-311-darwin.so",
"name" : "select.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4382474240,
"size" : 16384,
"uuid" : "d685528c-5d21-3c1a-b720-81f8ba0b399a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_posixsubprocess.cpython-311-darwin.so",
"name" : "_posixsubprocess.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4382392320,
"size" : 16384,
"uuid" : "9e9f3dfb-1383-3420-bfcf-d996842d8e9e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/fcntl.cpython-311-darwin.so",
"name" : "fcntl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4382277632,
"size" : 32768,
"uuid" : "167d8231-8346-37b6-9d67-149a1fe3df21",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_struct.cpython-311-darwin.so",
"name" : "_struct.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4382179328,
"size" : 32768,
"uuid" : "c4b2ad90-cc7d-3780-bee9-9f1dbc2aa560",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/binascii.cpython-311-darwin.so",
"name" : "binascii.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4382097408,
"size" : 16384,
"uuid" : "487467f0-5417-397f-8fb9-43ce116abec8",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_sha512.cpython-311-darwin.so",
"name" : "_sha512.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4379213824,
"size" : 16384,
"uuid" : "1eab426b-5d06-3a22-b7b5-6dbc112704d6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_random.cpython-311-darwin.so",
"name" : "_random.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4379131904,
"size" : 16384,
"uuid" : "a97f3cfd-a5a7-3ce2-9eb6-5ebc0943bd1d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bisect.cpython-311-darwin.so",
"name" : "_bisect.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4382687232,
"size" : 196608,
"uuid" : "a4b86716-73ef-3046-b7ee-1d069dfd7cd0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_lzma.cpython-311-darwin.so",
"name" : "_lzma.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4379049984,
"size" : 16384,
"uuid" : "dc7a591b-ef8a-3b77-9396-ecee27303fdb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bz2.cpython-311-darwin.so",
"name" : "_bz2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4378935296,
"size" : 32768,
"uuid" : "65172ede-2b95-337d-970f-ed6c4a217cb1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/zlib.cpython-311-darwin.so",
"name" : "zlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4377444352,
"size" : 16384,
"uuid" : "39aa96c6-b691-3e20-9540-292b9dd1c861",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_typing.cpython-311-darwin.so",
"name" : "_typing.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4377264128,
"size" : 81920,
"uuid" : "3b2e1e73-f5e1-3fa3-80b3-e46009060893",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_datetime.cpython-311-darwin.so",
"name" : "_datetime.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4377526272,
"size" : 49152,
"uuid" : "51d31d0d-1dcc-31ad-b6c1-73d57e544a3a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/math.cpython-311-darwin.so",
"name" : "math.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4393861120,
"CFBundleShortVersionString" : "3.11.4, (c) 2001-2023 Python Software Foundation.",
"CFBundleIdentifier" : "org.python.python",
"size" : 3948544,
"uuid" : "88bffd37-99d8-36ab-9b95-9f54b30bd667",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python",
"name" : "Python",
"CFBundleVersion" : "3.11.4"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4375052288,
"CFBundleShortVersionString" : "1.8.0",
"CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX",
"size" : 16384,
"uuid" : "17982d98-65bc-3327-8526-577ec996453c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"name" : "ChimeraX",
"CFBundleVersion" : "1.8.0.0"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6667636736,
"size" : 241660,
"uuid" : "2a91fd2c-4cef-3211-a025-7a1c0a8c2db5",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6667878400,
"size" : 53248,
"uuid" : "45239f06-cc53-36d0-9933-7776ac7ea2fa",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6666424320,
"size" : 520180,
"uuid" : "49477e07-e77b-332f-b98d-79ca210a866d",
"path" : "\/usr\/lib\/system\/libsystem_c.dylib",
"name" : "libsystem_c.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6668087296,
"size" : 32744,
"uuid" : "031f3e8c-5227-3138-a444-68174c1c28cf",
"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
"name" : "libsystem_platform.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6727655424,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.AppKit",
"size" : 20172800,
"uuid" : "8b85317d-d56a-3370-8b78-da6c1d0fb53c",
"path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
"name" : "AppKit",
"CFBundleVersion" : "2487.50.124"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6759878656,
"CFBundleShortVersionString" : "1.600.0",
"CFBundleIdentifier" : "com.apple.SkyLight",
"size" : 4849664,
"uuid" : "c003a2d5-1b07-3581-8f9c-7286e6745ffb",
"path" : "\/System\/Library\/PrivateFrameworks\/SkyLight.framework\/Versions\/A\/SkyLight",
"name" : "SkyLight"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6666117120,
"size" : 294912,
"uuid" : "7f973554-8168-35bf-ae86-2e9123e81bf7",
"path" : "\/usr\/lib\/system\/libdispatch.dylib",
"name" : "libdispatch.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6668304384,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 5083136,
"uuid" : "33908a83-098f-3437-973e-fb848c4f39df",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "2420"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6844350464,
"CFBundleShortVersionString" : "2.1.1",
"CFBundleIdentifier" : "com.apple.HIToolbox",
"size" : 2899968,
"uuid" : "c315e2a3-3fd1-3a2b-b205-b8b492b0f506",
"path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
"name" : "HIToolbox"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6664175616,
"size" : 559580,
"uuid" : "f6dd3ec2-85a4-3ab1-8486-b189cd980ebe",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6666944512,
"size" : 577528,
"uuid" : "08c4329e-407f-310b-b037-75a8020b2963",
"path" : "\/usr\/lib\/libc++.1.dylib",
"name" : "libc++.1.dylib"
}
],
"sharedCache" : {
"base" : 6663421952,
"size" : 4189880320,
"uuid" : "a53b7d2f-a773-3524-8828-248b33ef0b4e"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.5G resident=0K(0%) swapped_out_or_unallocated=1.5G(100%)\nWritable regions: Total=19.7G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=19.7G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 384K 3 \nActivity Tracing 256K 1 \nCG image 704K 40 \nColorSync 656K 31 \nCoreAnimation 2096K 129 \nCoreGraphics 48K 3 \nCoreUI image data 5184K 43 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 18.2G 297 \nMALLOC guard page 384K 24 \nMach message 64K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 1072K 67 \nStack 170.8M 68 \nStack Guard 56.0M 1 \nVM_ALLOCATE 557.2M 349 \nVM_ALLOCATE (reserved) 832.0M 8 reserved VM address space (unallocated)\n__AUTH 2679K 439 \n__AUTH_CONST 32.9M 661 \n__CTF 824 1 \n__DATA 26.0M 891 \n__DATA_CONST 45.2M 892 \n__DATA_DIRTY 2050K 240 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 562.5M 232 \n__OBJC_RO 71.7M 1 \n__OBJC_RW 2195K 1 \n__TEXT 1.0G 909 \ndyld private memory 592K 7 \nmapped file 238.8M 61 \nshared memory 3760K 30 \n=========== ======= ======= \nTOTAL 21.7G 5442 \nTOTAL, minus reserved VM space 20.9G 5442 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "3e007e65458b363b257d358c43eb0e3be033561d",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "6434420a89ec2e0a7a38bf5a",
"factorPackIds" : {
},
"deploymentId" : 240000011
},
{
"rolloutId" : "648a2601f74c42732876cb5b",
"factorPackIds" : {
"SIRI_TEXT_TO_SPEECH" : "66b55f4e9142fa69576cb851"
},
"deploymentId" : 240000272
}
],
"experiments" : [
{
"treatmentId" : "45f4e2a5-551b-4bc2-a2dc-19c244dda8f8",
"experimentId" : "6643969b3099cf28e049862f",
"deploymentId" : 400000007
}
]
}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 1/Chimera Session V2/HSa.cxs"
Log from Sat Dec 21 19:42:25 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 1/Chimera Session V2/HSa.cxs"
Log from Sat Dec 21 18:53:40 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Figure1_HSA.cxs"
Log from Fri Dec 20 14:57:31 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Figure1_noRvbs'.cxs" format
> session
Opened 121124-a8-split_xl080.mrc as #1, grid size 480,480,480, pixel 0.835,
shown at level 0.00375, step 1, values float32
Opened ies2-x80-lowres.mrc as #3, grid size 480,480,480, pixel 0.835, shown at
level 0.348, step 1, values float32
Opened 041924-global-resampleonapo.mrc 0 as #5.1, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 1 as #5.2, grid size 480,480,480, pixel
0.835, shown at level 0.238, step 1, values float32
Opened 041924-global-resampleonapo.mrc 2 as #5.3, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 3 as #5.4, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 4 as #5.5, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 5 as #5.6, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 6 as #5.7, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 7 as #5.8, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 8 as #5.9, grid size 480,480,480, pixel
0.835, shown at level 0.235, step 1, values float32
Opened 041924-global-resampleonapo.mrc 9 as #5.10, grid size 480,480,480,
pixel 0.835, shown at level 0.174, step 1, values float32
Opened 041924-nuc-resampleonapo_xl080.mrc as #6, grid size 480,480,480, pixel
0.835, shown at level 1.44, step 1, values float32
Opened 121124-a8-split_Xl040.mrc as #4, grid size 448,448,448, pixel 0.831,
shown at level 0.0026, step 1, values float32
Opened onlyies2-lowres-Xl040.mrc as #7, grid size 448,448,448, pixel 0.831,
shown at level 0.0519, step 1, values float32
Opened onlynuc_Xl040.mrc as #8, grid size 448,448,448, pixel 0.831, shown at
level 0.411, step 1, values float32
Opened inocore_Xl040.mrc as #9, grid size 448,448,448, pixel 0.831, shown at
level 0.218, step 1, values float32
Opened 041924-global-resampleonapo.mrc as #11, grid size 480,480,480, pixel
0.835, shown at level 0.105, step 2, values float32
Opened 041924-global-resampleonapo.mrc 0 as #12.1, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Opened 041924-global-resampleonapo.mrc 1 as #12.2, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Opened 041924-global-resampleonapo.mrc 2 as #12.3, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Opened 041924-global-resampleonapo.mrc 3 as #12.4, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Opened 041924-global-resampleonapo.mrc 4 as #12.5, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Opened 041924-global-resampleonapo.mrc 5 as #12.6, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Opened 041924-global-resampleonapo.mrc 6 as #12.7, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Opened 041924-global-resampleonapo.mrc 7 as #12.8, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Opened 041924-global-resampleonapo.mrc 8 as #12.9, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Opened 041924-global-resampleonapo.mrc 9 as #12.10, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Opened 041924-global-resampleonapo.mrc 10 as #12.11, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Log from Thu Dec 12 17:07:10 2024UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Figure1_noRvbs'.cxs" format
> session
Opened 121124-a8-split_xl080.mrc as #1, grid size 480,480,480, pixel 0.835,
shown at level 0.00375, step 1, values float32
Opened ies2-x80-lowres.mrc as #3, grid size 480,480,480, pixel 0.835, shown at
level 0.348, step 1, values float32
Opened 041924-global-resampleonapo.mrc 0 as #5.1, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 1 as #5.2, grid size 480,480,480, pixel
0.835, shown at level 0.238, step 1, values float32
Opened 041924-global-resampleonapo.mrc 2 as #5.3, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 3 as #5.4, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 4 as #5.5, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 5 as #5.6, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 6 as #5.7, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 7 as #5.8, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 8 as #5.9, grid size 480,480,480, pixel
0.835, shown at level 0.235, step 1, values float32
Opened 041924-global-resampleonapo.mrc 9 as #5.10, grid size 480,480,480,
pixel 0.835, shown at level 0.174, step 1, values float32
Opened 041924-nuc-resampleonapo_xl080.mrc as #6, grid size 480,480,480, pixel
0.835, shown at level 1.44, step 1, values float32
Opened 121124-a8-split_Xl040.mrc as #4, grid size 448,448,448, pixel 0.831,
shown at level 0.0026, step 1, values float32
Opened onlyies2-lowres-Xl040.mrc as #7, grid size 448,448,448, pixel 0.831,
shown at level 0.0519, step 1, values float32
Opened onlynuc_Xl040.mrc as #8, grid size 448,448,448, pixel 0.831, shown at
level 0.411, step 1, values float32
Opened inocore_Xl040.mrc as #9, grid size 448,448,448, pixel 0.831, shown at
level 0.218, step 1, values float32
Log from Thu Dec 12 15:35:36 2024 Startup Messages
---
warnings | Replacing fetcher for 'ngff' and format OME-Zarr from OME-Zarr bundle with that from OME-Zarr bundle
Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with
that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/wtINO80-0N80-Yeast-Apo/121124-a8-split.mrc"
Opened 121124-a8-split.mrc as #1, grid size 512,512,512, pixel 0.819, shown at
level 0.000444, step 2, values float32
> set bgColor white
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/wtINO80-0N80-Yeast-Apo/120524-inocore-nuc-3.16A.mrc"
Opened 120524-inocore-nuc-3.16A.mrc as #2, grid size 512,512,512, pixel 0.819,
shown at level 0.0802, step 2, values float32
> volume #1 step 1
> volume #2 step 1
> volume #1 level 0.001846
> surface dust #1 size 8.19
> surface dust #2 size 8.19
> volume #2 level 0.1187
> volume #1 level 0.002828
> volume #2 level 0.1524
> volume #2 level 0.1596
> volume #2 level 0.1741
> color #2 silver models
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/wtINO80-0N80-Yeast-Apo/120524-final-ino80-0y80-apo-512box.pdb"
Chain information for 120524-final-ino80-0y80-apo-512box.pdb #3
---
Chain | Description
A E | No description available
B F | No description available
C | No description available
D H | No description available
G | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
O | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
> volume #1 level 0.003126
> hide #!1 models
> hide #!2 models
> hide atoms
> show cartoons
> select #3/A-H,T-Y
26415 atoms, 26739 bonds, 2 pseudobonds, 3403 residues, 2 models selected
> ui tool show "Color Actions"
> color sel light gray
> select #3/I,J
7702 atoms, 8638 bonds, 1 pseudobond, 376 residues, 2 models selected
> color sel slate gray
> show sel atoms
> hide sel atoms
> nucleotides sel atoms
> style nucleic & sel stick
Changed 7702 atom styles
> nucleotides sel ladder
> show sel atoms
> select #3/Q
6141 atoms, 6266 bonds, 8 pseudobonds, 758 residues, 2 models selected
> color sel fire brick
> select #3/Z
464 atoms, 469 bonds, 1 pseudobond, 72 residues, 2 models selected
> color sel fire brick
> color sel orange
> select #3/R,S
4527 atoms, 4639 bonds, 2 pseudobonds, 570 residues, 2 models selected
> color sel medium sea green
> select #3/K
5092 atoms, 5206 bonds, 628 residues, 1 model selected
> color sel medium blue
> select #3/L
2856 atoms, 2919 bonds, 1 pseudobond, 363 residues, 2 models selected
> color sel gold
> select #3/M
3454 atoms, 3531 bonds, 1 pseudobond, 433 residues, 2 models selected
> color sel deep sky blue
> select #3/N
Nothing selected
> color dim gray
> undo
> select #3/O
287 atoms, 296 bonds, 34 residues, 1 model selected
> color sel dim gray
> select clear
> show #!2 models
> show #!1 models
> ui tool show "Color Zone"
> color zone #1 near #3 distance 4.91
> color zone #1 near #3 distance 4.81
> color zone #1 near #3 distance 4.71
> color zone #1 near #3 distance 4.61
> color zone #1 near #3 distance 4.51
> color zone #1 near #3 distance 4.41
> color zone #1 near #3 distance 4.31
> color zone #1 near #3 distance 4.21
> color zone #1 near #3 distance 4.11
> color zone #1 near #3 distance 4.01
> color zone #1 near #3 distance 3.91
> color zone #1 near #3 distance 3.81
> color zone #1 near #3 distance 3.71
> color zone #1 near #3 distance 3.61
> color zone #1 near #3 distance 3.51
> color zone #1 near #3 distance 3.41
> color zone #1 near #3 distance 3.83
> color zone #1 near #3 distance 9.39
> color zone #1 near #3 distance 1
> color zone #1 near #3 distance 10
[Repeated 1 time(s)]
> volume #1 level 0.00344
> color zone #2 near #3 distance 4.91
> volume #1 level 0.003283
> lighting simple
> lighting soft
> lighting simple
> lighting soft
> ui tool show "Side View"
> hide #!3 models
> color #1 #b2b2b224 models
> color #1 #b2b2b297 models
> color #1 #b2b2b296 models
> undo
[Repeated 4 time(s)]
> color zone #1 near #3 distance 10
> volume #2 level 0.1046
> volume #2 level 0.1313
> volume #2 level 0.1607
> volume #2 level 0.118
> volume #2 level 0.1287
> volume #2 level 0.15
> volume #2 level 0.1634
No map chosen to save
> save /Users/upneet/Desktop/test.png width 3600 height 2697 supersample 3
> transparentBackground true
> hide #!2 models
> hide #!1 models
> show #!3 models
> hide #!3 models
> show #!1 models
> show #!3 models
> hide #!1 models
> show #!1 models
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/WT-0N80Xe-ADPBeF/121124-a8-split.mrc"
Opened 121124-a8-split.mrc as #4, grid size 480,480,480, pixel 0.835, shown at
level 0.000837, step 2, values float32
> volume #4 level 0.003553
> volume #4 step 1
> hide #!3 models
> hide #!4 models
> hide #!1 models
> show #!4 models
> volume #4 level 0.003726
> volume #4 level 0.003661
> color #4 silver models
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/INO-40yeastnuc-ADPBeF/121124-a8-split.mrc"
Opened 121124-a8-split.mrc as #5, grid size 480,480,480, pixel 0.835, shown at
level 4.83e-07, step 2, values float32
> volume #5 level 0.003775
> volume #5 level 0.003851
> hide #!4 models
> hide #!5 models
> show #!3 models
> select ::name="ARG"
3893 atoms, 3559 bonds, 362 residues, 1 model selected
> ui mousemode right select
> select clear
Drag select of 1 residues
> show sel surfaces
> hide sel surfaces
> style sel stick
Changed 11 atom styles
> show sel atoms
> color sel byhetero
> hide #!3 models
> show #!1 models
> show #!2 models
> close #1-5
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/WT-0N80Xe-ADPBeF/121124-a8-split.mrc"
Opened 121124-a8-split.mrc as #1, grid size 480,480,480, pixel 0.835, shown at
level 4.88e-06, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/WT-0N80Xe-ADPBeF/121124-0n80-xe-wt-adpbef-final-coot-0-pymol-
> shortdna.pdb"
Chain information for 121124-0n80-xe-wt-adpbef-final-coot-0-pymol-shortdna.pdb
#2
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
O | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
> hide atoms
> show cartoons
> volume #1 step 1
> volume #1 level 0.004082
> hide #!2 models
> show #!2 models
> hide #!1 models
> color #2/Q firebrick
> color #2/Q firebrick, #2/R,S seagreen
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #2/Q firebrick
> color #2/R,S medium seagreen
> color #2/T-Y, A-H grey
> color #2/T-Y, A-H lightr grey
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #2/T-Y, A-H light grey
> color #2/Z orange
> color #2/k medium blue
> color #2/L gold
> color #2/N deep skyblue
> color #2/M deep skyblue
[Repeated 1 time(s)]
> color #2/O grey
> color #2/I,J slate blue
> color #2/I,J slate grey
> select #2/I,J
7787 atoms, 8735 bonds, 380 residues, 1 model selected
> nucleotides sel ladder
> show sel atoms
> select clear
[Repeated 2 time(s)]
> show #!1 models
> ui tool show "Color Zone"
> color zone #1 near #2 distance 5.01
> color zone #1 near #2 distance 5.19
> color zone #1 near #2 distance 11.56
> color zone #1 near #2 distance 11.7
[Repeated 1 time(s)]
> color zone #1 near #2 distance 1
> color zone #1 near #2 distance 10
[Repeated 1 time(s)]
> color zone #1 near #2 distance 1
> color zone #1 near #2 distance 15
[Repeated 1 time(s)]
> volume #1 level 0.004276
> volume #1 level 0.004216
> volume #1 level 0.003992
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/WT-0N80Xe-ADPBeF/ies2-x80-lowres.mrc"
Opened ies2-x80-lowres.mrc as #3, grid size 480,480,480, pixel 0.835, shown at
level 5.64e-05, step 2, values float32
> volume #3 step 1
> volume #3 level 0.3484
> hide #!3 models
> volume #1 level 0.003664
> surface dust #1 size 8.35
> volume #1 level 0.003843
> volume #1 level 0.003873
> ui tool show "Side View"
> volume #1 level 0.003754
> volume #1 level 0.003664
> surface dust #1 size 8.35
> volume #1 level 0.003754
> select #2/L
2862 atoms, 2925 bonds, 1 pseudobond, 364 residues, 2 models selected
> ui tool show "Color Actions"
> color sel sandy brown
> color zone #1 near #2 distance 15
> color sel navajo white
> color zone #1 near #2 distance 15
> hide #!1 models
> show #!1 models
> color sel goldenrod
> color zone #1 near #2 distance 15
> color sel orange
> color zone #1 near #2 distance 15
> color (#!2 & sel) #ffd479ff
> color zone #1 near #2 distance 15
> color (#!2 & sel) #ffd778ff
> color (#!2 & sel) #ffd87aff
> color (#!2 & sel) #ffdb82ff
> color (#!2 & sel) #ffdc89ff
> color (#!2 & sel) #ffe296ff
> color (#!2 & sel) #ffe396ff
> color (#!2 & sel) #ffea91ff
> color (#!2 & sel) #ffe482ff
> color (#!2 & sel) #ffe077ff
> color (#!2 & sel) #ffe370ff
> color (#!2 & sel) #ffea6cff
> color (#!2 & sel) #fff26aff
> color (#!2 & sel) #fff36aff
> color (#!2 & sel) #fff36dff
> color (#!2 & sel) #fff475ff
> color zone #1 near #2 distance 15
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> select #2/O
347 atoms, 356 bonds, 40 residues, 1 model selected
> color sel #011993ff
> color zone #1 near #2 distance 15
> color sel #9437ffff
> color zone #1 near #2 distance 15
> color sel #76d6ffff
> color zone #1 near #2 distance 15
> color sel #79b8ffff
> color zone #1 near #2 distance 15
> color sel #00fdffff
> color sel #73fdffff
> color zone #1 near #2 distance 15
> color sel #ffd479ff
> color zone #1 near #2 distance 15
> color sel #011993ff
> color sel #005493ff
> color zone #1 near #2 distance 15
> select clear
> select #2/Z
467 atoms, 472 bonds, 1 pseudobond, 72 residues, 2 models selected
> color (#!2 & sel) #ff2600ff
> color (#!2 & sel) #ff7e79ff
> select clear
> select #2/M
3430 atoms, 3507 bonds, 1 pseudobond, 429 residues, 2 models selected
> select #2/L
2862 atoms, 2925 bonds, 1 pseudobond, 364 residues, 2 models selected
> select #2/L
2862 atoms, 2925 bonds, 1 pseudobond, 364 residues, 2 models selected
> select #2/K
5614 atoms, 5735 bonds, 1 pseudobond, 692 residues, 2 models selected
> ui tool show "Color Actions"
> color sel cornflower blue
> color zone #1 near #2 distance 15
> color sel royal blue
> color zone #1 near #2 distance 15
> select #2/M
3430 atoms, 3507 bonds, 1 pseudobond, 429 residues, 2 models selected
> ui tool show "Color Actions"
> color sel light pink
> color zone #1 near #2 distance 15
> color sel plum
> color zone #1 near #2 distance 15
> color sel pink
> color zone #1 near #2 distance 15
> color sel light pink
> color zone #1 near #2 distance 15
> hide #!1 models
> cartoon style (#!2 & sel) modeHelix tube sides 20
> cartoon style modeHelix tube radius 1.5
> select clear
> show #!1 models
> select #2/L
2862 atoms, 2925 bonds, 1 pseudobond, 364 residues, 2 models selected
> select #2/K
5614 atoms, 5735 bonds, 1 pseudobond, 692 residues, 2 models selected
> ui tool show "Color Actions"
> color sel cornflower blue
> color sel blue
> color zone #1 near #2 distance 15
> color sel medium blue
> color zone #1 near #2 distance 15
> select #2/M
3430 atoms, 3507 bonds, 1 pseudobond, 429 residues, 2 models selected
> ui tool show "Color Actions"
> color sel deep sky blue
> color zone #1 near #2 distance 15
> select clear
> hide #!1 models
> show #!1 models
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/WT-0N80Xe-ADPBeF/041924-global-resampleonapo.mrc"
Opened 041924-global-resampleonapo.mrc as #4, grid size 480,480,480, pixel
0.835, shown at level 0.105, step 2, values float32
> volume #4 step 1
> volume #4 level 0.1559
> volume #4 level 0.2387
> volume #4 level 0.3295
> volume #4 level 0.2569
> volume #4 level 0.2205
> color zone #4 near #2 distance 5.01
> hide #!2 models
> lighting soft
> lighting simple
> lighting soft
> volume splitbyzone #4
Opened 041924-global-resampleonapo.mrc 0 as #5.1, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 1 as #5.2, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 2 as #5.3, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 3 as #5.4, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 4 as #5.5, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 5 as #5.6, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 6 as #5.7, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 7 as #5.8, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 8 as #5.9, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 9 as #5.10, grid size 480,480,480,
pixel 0.835, shown at level 0.221, step 1, values float32
> hide #!5 models
> show #!5 models
> hide #!5.2 models
> show #!5.2 models
> hide #!5.3 models
> hide #5.2.1 models
> show #5.2.1 models
> volume #5.2 level 0.2383
> volume #5.8 level 0.2205
> volume #5.9 level 0.2241
> volume #5.10 level 0.164
> volume #5.10 level 0.174
> surface dust #1 size 8.35
> surface dust #5.1 size 8.35
> surface dust #5.2 size 8.35
> surface dust #5.4 size 8.35
> surface dust #5.5 size 8.35
> surface dust #5.6 size 8.35
> surface dust #5.7 size 8.35
> surface dust #5.8 size 8.35
> surface dust #5.9 size 8.35
> surface dust #5.10 size 8.35
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/WT-0N80Xe-ADPBeF/041924-nuc-resampleonapo.mrc"
Opened 041924-nuc-resampleonapo.mrc as #6, grid size 480,480,480, pixel 0.835,
shown at level 0.188, step 2, values float32
> color zone #6 near #2 distance 5.01
> surface dust #1 size 8.35
> surface dust #5.1 size 8.35
> surface dust #5.2 size 8.35
> surface dust #5.4 size 8.35
> surface dust #5.5 size 8.35
> surface dust #5.6 size 8.35
> surface dust #5.7 size 8.35
> surface dust #5.8 size 8.35
> surface dust #5.9 size 8.35
> surface dust #5.10 size 8.35
> surface dust #6 size 8.35
> volume #6 step 1
> volume #6 level 0.7474
> volume #6 level 0.9057
> color zone #6 near #2 distance 5.01
[Repeated 1 time(s)]
> volume #6 level 1.127
> volume #6 level 1.233
> color zone #6 near #2 distance 5.11
> color zone #6 near #2 distance 5.21
> color zone #6 near #2 distance 5.31
> color zone #6 near #2 distance 5.41
> color zone #6 near #2 distance 5.51
> color zone #6 near #2 distance 5.61
> color zone #6 near #2 distance 5.71
> color zone #6 near #2 distance 5.81
> color zone #6 near #2 distance 5.91
> color zone #6 near #2 distance 6.01
> color zone #6 near #2 distance 6.11
> color zone #6 near #2 distance 6.21
> volume #6 level 1.444
> volume #5.9 level 0.2348
> show #!3 models
> color zone #3 near #2 distance 5.01
> select clear
> save /Users/upneet/Desktop/test.png width 3600 height 2671 supersample 3
> transparentBackground true
> close #4
> rename #5 "041924-global-resampleonapo_xl080.mrc split"
> rename #6 041924-nuc-resampleonapo_xl080.mrc
> rename #1 121124-a8-split_xl080.mrc
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/INO-40Xenuc-ADPBe/121124-a8-split.mrc"
Opened 121124-a8-split.mrc as #4, grid size 448,448,448, pixel 0.831, shown at
level 0.0002, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/INO-40Xenuc-ADPBe/onlyies2-lowres.mrc"
Opened onlyies2-lowres.mrc as #7, grid size 448,448,448, pixel 0.831, shown at
level 2.07e-05, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/INO-40Xenuc-ADPBe/onlynuc.mrc"
Opened onlynuc.mrc as #8, grid size 448,448,448, pixel 0.831, shown at level
9.79e-05, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/INO-40Xenuc-ADPBe/inocore.mrc"
Opened inocore.mrc as #9, grid size 448,448,448, pixel 0.831, shown at level
3.68e-05, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/INO-40Xenuc-ADPBe/nuc-resample.mrc"
Opened nuc-resample.mrc as #10, grid size 448,448,448, pixel 0.831, shown at
level 0.326, step 2, values float32
> surface dust #1 size 8.35
> surface dust #3 size 8.35
> surface dust #5.1 size 8.35
> surface dust #5.2 size 8.35
> surface dust #5.4 size 8.35
> surface dust #5.5 size 8.35
> surface dust #5.6 size 8.35
> surface dust #5.7 size 8.35
> surface dust #5.8 size 8.35
> surface dust #5.9 size 8.35
> surface dust #5.10 size 8.35
> surface dust #6 size 8.35
> surface dust #4 size 8.31
> surface dust #7 size 8.31
> surface dust #8 size 8.31
> surface dust #9 size 8.31
> surface dust #10 size 8.31
> hide #!7 models
> hide #!8 models
> hide #!9 models
> hide #!10 models
> rename #7 onlyies2-lowres-Xl040.mrc
> rename #8 onlynuc_Xl040.mrc
> rename #9 inocore_Xl040.mrc
> rename #10 nuc-resample_Xl040.mrc
> surface dust #1 size 8.35
> surface dust #3 size 8.35
> surface dust #5.1 size 8.35
> surface dust #5.2 size 8.35
> surface dust #5.4 size 8.35
> surface dust #5.5 size 8.35
> surface dust #5.6 size 8.35
> surface dust #5.7 size 8.35
> surface dust #5.8 size 8.35
> surface dust #5.9 size 8.35
> surface dust #5.10 size 8.35
> surface dust #6 size 8.35
> surface dust #4 size 8.31
> surface dust #10 size 8.31
> volume #7 step 1
> volume #8 step 1
> volume #9 step 1
> volume #10 step 1
> volume #7 level 0.00766
> volume #7 level 0.04253
> volume #8 level 0.1849
> volume #9 level 0.1834
> hide #!1 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!6 models
> show #!4 models
> hide #!4 models
> volume #10 level 0.6999
> volume #8 level 0.4115
> volume #7 level 0.05194
> volume #9 level 0.2181
> surface dust #7 size 8.31
> surface dust #8 size 8.31
> surface dust #9 size 8.31
> show #!4 models
> volume #4 step 1
> volume #4 level 0.002465
> lighting simple
> lighting soft
> volume #4 level 0.0026
> close #10
> rename #4 121124-a8-split_Xl040.mrc
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/Final-withADPBeF/042624-x40-wt-adpbef-withadpbef-final.pdb"
Chain information for 042624-x40-wt-adpbef-withadpbef-final.pdb #10
---
Chain | Description
A | No description available
B | No description available
C G | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
L | No description available
M | No description available
N | No description available
O | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
> hide #!10 cartoons
> hide #!10 atoms
> show #!10 cartoons
> hide #!7 models
> hide #!8 models
> hide #!9 models
> hide #!10 models
> hide #!4 models
> show #!10 models
> color #10/Q firebrick
Drag select of 808 residues
> color #10/R,S medium seagreen
> color #10/T-Y,A-H medium seagreen
> color #10/T-Y,A-H light gray
> select clear
> color #10/T-Y,I,J light slate gray
> color #10/I,J light slate gray
> nucleotides #!10 ladder
> show #!10 atoms
> undo
> select #10/I,J
6601 atoms, 7404 bonds, 322 residues, 1 model selected
> show sel atoms
> select clear
> select #10/K
32 atoms, 32 bonds, 2 pseudobonds, 3 residues, 2 models selected
> color #10/N medium blue
[Repeated 1 time(s)]
> select #10/L
2824 atoms, 2886 bonds, 1 pseudobond, 361 residues, 2 models selected
> ui tool show "Color Actions"
> color sel sandy brown
> color sel goldenrod
[Repeated 1 time(s)]
> show #!2 models
> cartoon style (#!10 & sel) modeHelix tube sides 20
> select up
55996 atoms, 57633 bonds, 12 pseudobonds, 6600 residues, 2 models selected
> select up
55996 atoms, 57633 bonds, 14 pseudobonds, 6600 residues, 3 models selected
> select up
55996 atoms, 57633 bonds, 14 pseudobonds, 6600 residues, 3 models selected
> select up
114335 atoms, 117752 bonds, 14 pseudobonds, 13459 residues, 19 models selected
> select down
55996 atoms, 57633 bonds, 14 pseudobonds, 6600 residues, 3 models selected
> select down
14 pseudobonds, 2 models selected
> cartoon style modeHelix tube radius 1.5
> select #10/Z
467 atoms, 472 bonds, 1 pseudobond, 72 residues, 2 models selected
> color sel salmon
[Repeated 1 time(s)]
> color sel dark salmon
> color sel salmon
> select #10/L
2824 atoms, 2886 bonds, 1 pseudobond, 361 residues, 2 models selected
> color (#!10 & sel) #ffd479ff
> color (#!10 & sel) #feff80ff
[Repeated 1 time(s)]
> select clear
> select #10/M
3422 atoms, 3498 bonds, 1 pseudobond, 431 residues, 2 models selected
> color sel deep sky blue
> select #10/O\
Nothing selected
> select #10/O
287 atoms, 296 bonds, 34 residues, 1 model selected
> color sel royal blue
> color sel #2163a6ff
[Repeated 1 time(s)]
> select clear
> hide #!2 models
> show #!9 models
> show #!8 models
> show #!4 models
> show #!7 models
> ui tool show "Color Zone"
> color zone #4 near #10 distance 4.99
> color zone #4 near #10 distance 1
> color zone #4 near #10 distance 10
> color zone #7 near #10 distance 4.99
> color zone #8 near #10 distance 4.99
> color zone #9 near #10 distance 4.99
> hide #!4 models
> show #!4 models
> hide #!10 models
> ui tool show "Side View"
> show #!2 models
> hide #!2 models
> show #!1 models
> hide #!1 models
> show #!6 models
> hide #!6 models
> show #!5 models
> hide #!5 models
> show #!1 models
> hide #!7 models
> hide #!8 models
> hide #!9 models
> hide #!4 models
> show #!3 models
> show #!4 models
> hide #!4 models
> show #!5 models
> show #!6 models
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2/xl_080_map.png" width 3600 height 2934 supersample 3
> transparentBackground true
> hide #!1 models
> hide #!3 models
> hide #!5 models
> hide #!6 models
> show #!8 models
> show #!9 models
> show #!7 models
> show #!4 models
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2/xl_040_map.png" width 3600 height 2934 supersample 3
> transparentBackground true
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Figure1.cxs" includeMaps
> true
> show #!10 models
> select #10/L
2824 atoms, 2886 bonds, 1 pseudobond, 361 residues, 2 models selected
> ui tool show "Color Actions"
> color sel gold
[Repeated 1 time(s)]
> color zone #9 near #10 distance 4.99
> color zone #4 near #10 distance 10
> select clear
> hide #!10 models
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Xl_0N40_map.png" width 3600
> height 2700 supersample 3 transparentBackground true
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Xl_0N40_map.png" width 3600
> height 2700 supersample 4 transparentBackground true
> select clear
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Xl_0N40_map.png" width 3600
> height 2700 supersample 1 transparentBackground true
> graphics silhouettes true
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Xl_0N40_map.png" width 3600
> height 2700 supersample 3 transparentBackground true
> graphics silhouettes false
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Xl_0N40_map.png" width 3600
> height 2700 supersample 3 transparentBackground true
> hide #!4 models
> hide #!7 models
> hide #!8 models
> hide #!9 models
> show #!1 models
> show #!3 models
> show #!5 models
> show #!6 models
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Xl_0N80_map.png" width 3600
> height 2700 supersample 3 transparentBackground true
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Figure1.cxs" includeMaps
> true
> undo
> show #!6 models
> hide #!6 models
> hide #!5 models
> hide #!3 models
> hide #!1 models
> show #!10 models
> select #10/T-Y, Q:1022-1200
1186 atoms, 1210 bonds, 1 pseudobond, 147 residues, 2 models selected
> hide sel atoms
> hide sel cartoons
> select #10/T-Y
20471 atoms, 20720 bonds, 2 pseudobonds, 2649 residues, 2 models selected
> hide sel cartoons
Drag select of 98 residues
> select up
910 atoms, 932 bonds, 115 residues, 1 model selected
> hide sel cartoons
> select #10/Z
467 atoms, 472 bonds, 1 pseudobond, 72 residues, 2 models selected
> hide sel cartoons
> select clear
> show #!4 models
> color #4 silver models
> color #4 #d6d6d6ff models
> color #4 silver models
> color #4 #c0c0c023 models
> color #4 #c0c0c000 models
> color #4 #c0c0c00e models
> graphics silhouettes true
> graphics silhouettes false
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting shadows true
> lighting soft
> color #4 #c0c0c01b models
> color #4 white models
> color #4 #ffffff25 models
> color #4 #d6d6d6ff models
> color #4 #d6d6d605 models
> color #4 #d6d6d619 models
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Figure1_noRvbs'.cxs"
> includeMaps true
——— End of log from Thu Dec 12 15:35:36 2024 ———
opened ChimeraX session
> hide #!4 models
> hide #!10 models
> show #!2 models
> select #2/T-Y,Z
20950 atoms, 21202 bonds, 3 pseudobonds, 2723 residues, 2 models selected
> hide sel cartoons
> ui mousemode right select
Drag select of 18 residues
> select up
248 atoms, 246 bonds, 49 residues, 1 model selected
> select up
651 atoms, 649 bonds, 130 residues, 1 model selected
> select up
724 atoms, 722 bonds, 140 residues, 1 model selected
> select up
2940 atoms, 2998 bonds, 427 residues, 1 model selected
> select down
724 atoms, 722 bonds, 140 residues, 1 model selected
> hide sel cartoons
[Repeated 1 time(s)]Drag select of 7 residues, 1 pseudobonds
> select up
120 atoms, 119 bonds, 1 pseudobond, 24 residues, 2 models selected
> select up
130 atoms, 129 bonds, 1 pseudobond, 26 residues, 2 models selected
> select up
194 atoms, 194 bonds, 1 pseudobond, 33 residues, 2 models selected
> select up
1894 atoms, 1922 bonds, 1 pseudobond, 278 residues, 2 models selected
> select down
194 atoms, 194 bonds, 1 pseudobond, 33 residues, 2 models selected
> hide sel cartoons
> select #2/Q:1022-1294
1922 atoms, 1967 bonds, 1 pseudobond, 241 residues, 2 models selected
> color (#!2 & sel) orange
> select #2/L
2862 atoms, 2925 bonds, 1 pseudobond, 364 residues, 2 models selected
> ui tool show "Color Actions"
> color sel gold
> select clear
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/WT-0N80Xe-ADPBeF/041924-global-resampleonapo.mrc"
Opened 041924-global-resampleonapo.mrc as #11, grid size 480,480,480, pixel
0.835, shown at level 0.105, step 2, values float32
> ui tool show "Color Zone"
> color zone #11 near #2 distance 5.01
> volume splitbyzone #11
Opened 041924-global-resampleonapo.mrc 0 as #12.1, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Opened 041924-global-resampleonapo.mrc 1 as #12.2, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Opened 041924-global-resampleonapo.mrc 2 as #12.3, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Opened 041924-global-resampleonapo.mrc 3 as #12.4, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Opened 041924-global-resampleonapo.mrc 4 as #12.5, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Opened 041924-global-resampleonapo.mrc 5 as #12.6, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Opened 041924-global-resampleonapo.mrc 6 as #12.7, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Opened 041924-global-resampleonapo.mrc 7 as #12.8, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Opened 041924-global-resampleonapo.mrc 8 as #12.9, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Opened 041924-global-resampleonapo.mrc 9 as #12.10, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
Opened 041924-global-resampleonapo.mrc 10 as #12.11, grid size 480,480,480,
pixel 0.835, shown at level 0.105, step 1, values float32
> hide #!12.1 models
> hide #!12.2 models
> hide #!12.9 models
> hide #!12.4 models
> hide #!12.5 models
> hide #!12.6 models
> hide #!12.7 models
> hide #!12.11 models
> hide #!12.3 models
> select #2/Q:1022-1294
1922 atoms, 1967 bonds, 1 pseudobond, 241 residues, 2 models selected
> hide sel cartoons
> show #!1 models
> hide #!1 models
> hide #!2 models
> hide #!12 models
> show #!2 models
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Xl_0N80_model_noRvbs.png"
> width 3600 height 3420 supersample 3 transparentBackground true
> show #!1 models
> show #!12 models
> show #!6 models
> hide #!2 models
> color #1 white models
> color #1 #ffffff00 models
> graphics silhouettes true
> color #6 white models
> color #6 #ffffff00 models
> color #12 white models
> color #12 #ffffff00 models
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Xl_0N80_map_noRvbs.png"
> width 3600 height 3420 supersample 3 transparentBackground true
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Figure1_noRvbs'.cxs"
> includeMaps true
——— End of log from Thu Dec 12 17:07:10 2024 ———
opened ChimeraX session
> close #2-5
> close #1,6-9
> show #!11 models
> close #11-12
> show #!10 models
> graphics silhouettes false
> show surfaces
> select #10/T-Y
20471 atoms, 20720 bonds, 2 pseudobonds, 2649 residues, 2 models selected
> hide sel surfaces
> select #10/Q:1022-1294
1916 atoms, 1961 bonds, 1 pseudobond, 241 residues, 2 models selected
> hide sel surfaces
> select #10/z
467 atoms, 472 bonds, 1 pseudobond, 72 residues, 2 models selected
> hide sel surfaces
> select #10/R,S
4562 atoms, 4675 bonds, 2 pseudobonds, 567 residues, 2 models selected
> hide sel surfaces
> hide sel cartoons
[Repeated 1 time(s)]
> select #10
55996 atoms, 57633 bonds, 14 pseudobonds, 6600 residues, 15 models selected
> color (#!10 & sel) light gray
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> select #10/Q:0-700
1105 atoms, 1118 bonds, 130 residues, 1 model selected
> ui tool show "Color Actions"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> color sel fire brick
> transparency (#!10 & sel) 80
> hide sel surfaces
[Repeated 1 time(s)]
> show sel surfaces
[Repeated 1 time(s)]
> select #10/R,S
4562 atoms, 4675 bonds, 2 pseudobonds, 567 residues, 2 models selected
> hide sel cartoons
> hide sel surfaces
> select up
55996 atoms, 57633 bonds, 12 pseudobonds, 6600 residues, 4 models selected
> select up
55996 atoms, 57633 bonds, 14 pseudobonds, 6600 residues, 27 models selected
> select #10/z
467 atoms, 472 bonds, 1 pseudobond, 72 residues, 2 models selected
> hide sel surfaces
> select #10/Q:1022-1294
1916 atoms, 1961 bonds, 1 pseudobond, 241 residues, 2 models selected
> hide sel surfaces
[Repeated 1 time(s)]
> select #10/T-Y
20471 atoms, 20720 bonds, 2 pseudobonds, 2649 residues, 2 models selected
> hide sel surfaces
> transparency (#!10 & sel) 40
> select #10
55996 atoms, 57633 bonds, 14 pseudobonds, 6600 residues, 15 models selected
> transparency (#!10 & sel) 80
> select clear
> select #10
55996 atoms, 57633 bonds, 14 pseudobonds, 6600 residues, 15 models selected
> color (#!10 & sel) light gray
> transparency (#!10 & sel) 30
> transparency (#!10 & sel) 80
> hide sel cartoons
> hide sel atoms
> show sel atoms
> hide sel atoms
> show sel surfaces
> show sel cartoons
> select #10/T-Y
20471 atoms, 20720 bonds, 2 pseudobonds, 2649 residues, 2 models selected
> hide sel surfaces
> hide sel cartoons
> select #10/Q:1022-1294
1916 atoms, 1961 bonds, 1 pseudobond, 241 residues, 2 models selected
> hide sel cartoons
> hide sel surfaces
> select #10/z
467 atoms, 472 bonds, 1 pseudobond, 72 residues, 2 models selected
> select #10/z
467 atoms, 472 bonds, 1 pseudobond, 72 residues, 2 models selected
> hide sel surfaces
> hide sel cartoons
> select #10/R,S
4562 atoms, 4675 bonds, 2 pseudobonds, 567 residues, 2 models selected
> hide sel surfaces
> hide sel cartoons
> select #10/Q:0-700
1105 atoms, 1118 bonds, 130 residues, 1 model selected
> color (#!10 & sel) red
> transparency #10/Q:0-700 0 surfaces
> hide sel surfaces
> select #10/Q:700-3000
5289 atoms, 5408 bonds, 3 pseudobonds, 660 residues, 2 models selected
> hide sel cartoons
> select #10/K,L,M,O
6565 atoms, 6712 bonds, 4 pseudobonds, 829 residues, 3 models selected
> hide sel cartoons
> select #10/N
5060 atoms, 5173 bonds, 626 residues, 1 model selected
> hide sel surfaces
> show sel surfaces
> hide sel cartoons
> select clear
> select #10/Q:545, 544, 537, 534, 533, 526, 523 , 482, 483, 487, 490, 504,
> 505, 512, 515, 522, 523, 526,
Expected a keyword
> select #10/Q:545, 544, 537, 534, 533, 526, 523, 482, 483, 487, 490, 504,
> 505, 512, 515, 522, 523, 526,
Expected an objects specifier or a keyword
> select #10/Q:482, 483, 487, 490, 504, 505, 512, 515, 522, 545, 544, 537,
> 534, 533, 526, 523,
Expected an objects specifier or a keyword
> select #10/Q:482, 483, 487, 490, 504, 505, 512, 515, 522, 545, 544, 537,
> 534, 533, 526, 523
160 atoms, 150 bonds, 16 residues, 1 model selected
> style sel sphere
Changed 160 atom styles
> show sel surfaces
> hide sel surfaces
> show sel atoms
> style sel ball
Changed 160 atom styles
> style sel stick
Changed 160 atom styles
> select clear
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Figure1_HSA.cxs"
> includeMaps true
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Figure1_HSA.cxs"
——— End of log from Fri Dec 20 14:57:31 2024 ———
opened ChimeraX session
> ui mousemode right "translate selected models"
> select #10/Q:482, 483, 487, 490, 504, 505, 512, 515, 522, 545, 544, 537,
> 534, 533, 526, 523
160 atoms, 150 bonds, 16 residues, 1 model selected
> show sel surfaces
> transparency (#!10 & sel) 90
> view matrix models #10,1,0,0,38.985,0,1,0,21.605,0,0,1,42.977
> surface #10/K,L,M,O
> hide sel surfaces
> select #10/K,L,M,O
6565 atoms, 6712 bonds, 4 pseudobonds, 829 residues, 3 models selected
> hide sel surfaces
> ui mousemode right select
Drag select of 042624-x40-wt-adpbef-withadpbef-final.pdb_N SES surface, 64778
of 571650 triangles, cap near, 178 of 1639 triangles
> select up
5060 atoms, 626 residues, 3 models selected
> select up
55996 atoms, 57633 bonds, 6600 residues, 3 models selected
> select down
5060 atoms, 626 residues, 26 models selected
> hide sel surfaces
> select #10/Q:700-2000
5289 atoms, 5408 bonds, 3 pseudobonds, 660 residues, 2 models selected
> hide sel surfaces
> undo
[Repeated 3 time(s)]
> select #10/Q:700-2000
5289 atoms, 5408 bonds, 3 pseudobonds, 660 residues, 2 models selected
> show sel cartoons
> select #10/Q:482, 483, 487, 490, 504, 505, 512, 515, 522, 545, 544, 537,
> 534, 533, 526, 523
160 atoms, 150 bonds, 16 residues, 1 model selected
> show sel surfaces
> cartoon style (#!10 & sel) xsection oval modeHelix default
> select clear
> select #10/Q
6394 atoms, 6526 bonds, 4 pseudobonds, 790 residues, 2 models selected
> ui tool show "Color Actions"
> color sel fire brick
> transparency (#!10 & sel) 80
> select clear
> select #I,J,A-H
Expected an objects specifier or a keyword
> select #10/I,J,A-H
12477 atoms, 13355 bonds, 1 pseudobond, 1067 residues, 2 models selected
> hide sel surfaces
> nucleotides sel atoms
> style nucleic & sel stick
Changed 6601 atom styles
> nucleotides sel fill
> style nucleic & sel stick
Changed 6601 atom styles
> nucleotides sel fill
> style nucleic & sel stick
Changed 6601 atom styles
> nucleotides sel ladder
> show sel atoms
> undo
> select #10/I,J
6601 atoms, 7404 bonds, 322 residues, 1 model selected
> nucleotides sel ladder
> show sel atoms
> select clear
> preset cartoons/nucleotides cylinders/stubs
Using preset: Cartoons/Nucleotides / Cylinders/Stubs
Changed 49041 atom styles
Preset expands to these ChimeraX commands:
show nucleic
hide protein|solvent|H
surf hide
style (protein|nucleic|solvent) & @@draw_mode=0 stick
~worm
cartoon
cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
cartoon style ~(nucleic|strand) x round
cartoon style (nucleic|strand) x rect
cartoon style protein modeh tube rad 2 sides 24 thick 0.6
cartoon style nucleic x round width 1.6 thick 1.6
nucleotides stubs
> undo
> select #10/Q:482, 483, 487, 490, 504, 505, 512, 515, 522, 545, 544, 537,
> 534, 533, 526, 523
160 atoms, 150 bonds, 16 residues, 1 model selected
> show sel surfaces
> select clear
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/WT-0N80Xe-ADPBeF/121124-0n80-xe-wt-adpbef-final-coot-0-pymol-
> shortdna.pdb"
Chain information for 121124-0n80-xe-wt-adpbef-final-coot-0-pymol-shortdna.pdb
#1
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
O | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
> hide #!10 models
> hide #!1 atoms
> show #!1 cartoons
Drag select of 104 residues
> ui mousemode right select
> ui mousemode right "translate selected models"
> select clear
> ui tool show "Side View"
> show #!10 models
> select add #10
55996 atoms, 57633 bonds, 14 pseudobonds, 6600 residues, 3 models selected
> ui mousemode right "translate selected models"
> view matrix models #10,1,0,0,7.7309,0,1,0,-1.5622,0,0,1,28.761
> view matrix models #10,1,0,0,21.604,0,1,0,-1.7319,0,0,1,10.905
> select #1/T-Y,R,S,Z
26265 atoms, 26627 bonds, 8 pseudobonds, 3449 residues, 2 models selected
> hide sel cartoons
> select add #10
82261 atoms, 84260 bonds, 22 pseudobonds, 10049 residues, 5 models selected
> select add #1
114335 atoms, 117752 bonds, 34 pseudobonds, 13459 residues, 29 models selected
> view matrix models
> #10,0.99854,0.0039952,-0.053886,36.374,-0.0072529,0.99815,-0.060394,16.722,0.053545,0.060697,0.99672,-6.6013,#1,0.99854,0.0039952,-0.053886,15.396,-0.0072529,0.99815,-0.060394,19.266,0.053545,0.060697,0.99672,-18.522
> view matrix models
> #10,0.99854,0.0039952,-0.053886,24.172,-0.0072529,0.99815,-0.060394,14.423,0.053545,0.060697,0.99672,-11.756,#1,0.99854,0.0039952,-0.053886,3.1942,-0.0072529,0.99815,-0.060394,16.967,0.053545,0.060697,0.99672,-23.676
> select subtract #1
55996 atoms, 57633 bonds, 14 pseudobonds, 6600 residues, 27 models selected
> view matrix models
> #10,0.99854,0.0039952,-0.053886,19.269,-0.0072529,0.99815,-0.060394,13.67,0.053545,0.060697,0.99672,-14.121
> ui tool show Matchmaker
> matchmaker #10/A to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 121124-0n80-xe-wt-adpbef-final-coot-0-pymol-shortdna.pdb, chain A
(#1) with 042624-x40-wt-adpbef-withadpbef-final.pdb, chain A (#10), sequence
alignment score = 464.5
RMSD between 92 pruned atom pairs is 0.625 angstroms; (across all 94 pairs:
1.166)
> select #1/Q:1022-1294
1922 atoms, 1967 bonds, 1 pseudobond, 241 residues, 2 models selected
> hide sel cartoons
> select #10/Q:1022-1294
1916 atoms, 1961 bonds, 1 pseudobond, 241 residues, 2 models selected
> hide sel cartoons
> select #10/I,J-A-H
3300 atoms, 3692 bonds, 161 residues, 1 model selected
> color (#!10 & sel) light gray
> select #1/I,J-A-H
3873 atoms, 4329 bonds, 190 residues, 1 model selected
> color sel light gray
> select #1/I,J-A-H
3873 atoms, 4329 bonds, 190 residues, 1 model selected
> color sel light gray
> select #1/Q
6141 atoms, 6266 bonds, 8 pseudobonds, 758 residues, 2 models selected
> ui tool show "Color Actions"
> color sel fire brick
> view matrix models
> #1,0.99854,0.0039952,-0.053886,11.602,-0.0072529,0.99815,-0.060394,23.788,0.053545,0.060697,0.99672,-13.106
> undo
> ui mousemode right select
Drag select of 7 residues
> select up
7787 atoms, 8735 bonds, 380 residues, 1 model selected
> select up
58339 atoms, 60119 bonds, 6859 residues, 1 model selected
> select down
7787 atoms, 8735 bonds, 380 residues, 1 model selected
> color sel light gray
> nucleotides sel ladder
> show sel atoms
Drag select of 183 residues, 1 pseudobonds
> select up
2840 atoms, 2860 bonds, 1 pseudobond, 364 residues, 8 models selected
> select up
7567 atoms, 7659 bonds, 1 pseudobond, 956 residues, 8 models selected
> color (#!1,10 & sel) light gray
> select up
114335 atoms, 117752 bonds, 12 pseudobonds, 13459 residues, 8 models selected
> select down
7567 atoms, 7659 bonds, 1 pseudobond, 956 residues, 27 models selected
Drag select of 56 residues
> select up
2398 atoms, 2426 bonds, 304 residues, 6 models selected
> color (#!1,10 & sel) light gray
Drag select of 12 residues
> select up
170 atoms, 170 bonds, 21 residues, 3 models selected
> select up
1286 atoms, 1300 bonds, 162 residues, 3 models selected
> color (#!1,10 & sel) light gray
Drag select of 27 residues
> select up
947 atoms, 963 bonds, 118 residues, 4 models selected
> color (#!1,10 & sel) light gray
> select #1/K,L,M,O
12253 atoms, 12523 bonds, 3 pseudobonds, 1525 residues, 2 models selected
> hide sel cartoons
[Repeated 1 time(s)]
> select #1/Q:482, 483, 487, 490, 504, 505, 512, 515, 522, 545, 544, 537, 534,
> 533, 526, 523
160 atoms, 150 bonds, 16 residues, 1 model selected
> show sel atoms
> style sel stick
Changed 160 atom styles
> show sel surfaces
> transparency (#!1 & sel) 90
> transparency (#!1 & sel) 80
> select clear
[Repeated 2 time(s)]Drag select of 4 residues, 5 shapes
> select clear
> ui mousemode right "translate selected models"
> ui mousemode right select
Drag select of 2 residues
> select up
739 atoms, 750 bonds, 95 residues, 1 model selected
> color sel light gray
> select clear
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 1/Chimera Session V2/HSa.cxs" includeMaps true
Drag select of 4 residues, 2 shapes
> select clear
> ui mousemode right "translate selected models"
> hide #!10 models
> select #1/K,L,M,O
12253 atoms, 12523 bonds, 3 pseudobonds, 1525 residues, 2 models selected
> show sel cartoons
> select #1/K
5614 atoms, 5735 bonds, 1 pseudobond, 692 residues, 2 models selected
> color (#!1 & sel) medium blue
> select #1/L
2862 atoms, 2925 bonds, 1 pseudobond, 364 residues, 2 models selected
> ui tool show "Color Actions"
> color sel gold
> select #1/M
3430 atoms, 3507 bonds, 1 pseudobond, 429 residues, 2 models selected
> color sel deep sky blue
> select #1/O
347 atoms, 356 bonds, 40 residues, 1 model selected
> color sel cornflower blue
> select #1/K,L,M,O
12253 atoms, 12523 bonds, 3 pseudobonds, 1525 residues, 2 models selected
> show sel surfaces
> transparency (#!1 & sel) 90
> hide sel cartoons
> hide sel surfaces
> view matrix models
> #1,0.99854,0.0039952,-0.053886,13.787,-0.0072529,0.99815,-0.060394,17.309,0.053545,0.060697,0.99672,-14.708
> select #1/K,L,M,O
12253 atoms, 12523 bonds, 3 pseudobonds, 1525 residues, 2 models selected
> select #1/K,L,M,O
12253 atoms, 12523 bonds, 3 pseudobonds, 1525 residues, 2 models selected
> show sel cartoons
> hide sel cartoons
> show sel surfaces
> color (#!1 & sel) light gray
> transparency (#!1 & sel) 90
> select clear
> hide #!1 surfaces
> undo
> select #1/Q:482, 483, 487, 490, 504, 505, 512, 515, 522, 545, 544, 537, 534,
> 533, 526, 523
160 atoms, 150 bonds, 16 residues, 1 model selected
> show sel surfaces
> select clear
> cartoon style #1 xsection oval modeHelix default
> cartoon style #1 modeHelix tube sides 20
> cartoon style modeHelix tube radius 1.5
> select #1/I,J
7787 atoms, 8735 bonds, 380 residues, 1 model selected
> color sel light slate gray
> select clear
> select #1/K,L,M,O
12253 atoms, 12523 bonds, 3 pseudobonds, 1525 residues, 2 models selected
> show sel cartoons
> transparency #1/K,L,M,O 80 cartoons
> select clear
> graphics silhouettes true
> select #1/K,L,M,O 80 c
Expected a keyword
> select #1/K,L,M,O
12253 atoms, 12523 bonds, 3 pseudobonds, 1525 residues, 2 models selected
> color sel cornflower blue
> color sel blue
> color sel medium blue
> color sel cornflower blue
> color sel deep sky blue
> color sel cyan
> color sel cornflower blue
> select clear
> show #!10 models
> select add #10
55996 atoms, 57633 bonds, 14 pseudobonds, 6600 residues, 3 models selected
> view matrix models
> #10,0.98483,-0.12885,-0.11623,65.285,0.11868,0.9888,-0.090544,-1.7103,0.1266,0.075375,0.98909,-24.897
> select subtract #10
24 models selected
> select add #1
58339 atoms, 60119 bonds, 20 pseudobonds, 6859 residues, 6 models selected
> select add #10
114335 atoms, 117752 bonds, 34 pseudobonds, 13459 residues, 14 models selected
> select subtract #1
55996 atoms, 57633 bonds, 14 pseudobonds, 6600 residues, 32 models selected
> select subtract #10
24 models selected
> hide #!1 models
> show #!1 models
> select #10/K,L,M,O
6565 atoms, 6712 bonds, 4 pseudobonds, 829 residues, 3 models selected
> show sel cartoons
> select #10/N
5060 atoms, 5173 bonds, 626 residues, 1 model selected
> show sel cartoons
> select #10/N,K,L,M,O
11625 atoms, 11885 bonds, 4 pseudobonds, 1455 residues, 3 models selected
> color sel cornflower blue
> transparency #10/N,K,L,M,O 90 cartoons
> select clear
> transparency #1/K,L,M,O 90 cartoons
> select clear
> select #1/ L
2862 atoms, 2925 bonds, 1 pseudobond, 364 residues, 2 models selected
> color sel gold
> select #10/ L
2824 atoms, 2886 bonds, 1 pseudobond, 361 residues, 2 models selected
> color sel gold
> select #10/ M
3422 atoms, 3498 bonds, 1 pseudobond, 431 residues, 2 models selected
> color sel deep sky blue
> color sel cyan
> color sel deep sky blue
> select #1/ M
3430 atoms, 3507 bonds, 1 pseudobond, 429 residues, 2 models selected
> color sel royal blue
> color sel deep sky blue
> select clear
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 1/Chimera Session V2/HSa.cxs" includeMaps true
——— End of log from Sat Dec 21 18:53:40 2024 ———
opened ChimeraX session
> select #10/I,J
6601 atoms, 7404 bonds, 322 residues, 1 model selected
> select clear
> hide #!10 models
> SEL #1/K,L,M,O
Unknown command: SEL #1/K,L,M,O
> select #1/K,L,M,O
12253 atoms, 12523 bonds, 3 pseudobonds, 1525 residues, 2 models selected
> hide sel cartoons
> view matrix models
> #1,0.99854,0.0039952,-0.053886,26.023,-0.0072529,0.99815,-0.060394,15.967,0.053545,0.060697,0.99672,-3.2803
> view matrix models
> #1,0.99854,0.0039952,-0.053886,42.833,-0.0072529,0.99815,-0.060394,16.012,0.053545,0.060697,0.99672,14.844
> view matrix models
> #1,0.99854,0.0039952,-0.053886,42.856,-0.0072529,0.99815,-0.060394,15.964,0.053545,0.060697,0.99672,14.815
> view matrix models
> #1,0.99854,0.0039952,-0.053886,46.079,-0.0072529,0.99815,-0.060394,15.76,0.053545,0.060697,0.99672,17.042
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.99848,0.002554,-0.055102,46.617,-0.005834,0.99821,-0.059446,15.308,0.054852,0.059677,0.99671,17.015
> ui mousemode right "translate selected models"
> view matrix models
> #1,0.99848,0.002554,-0.055102,47.291,-0.005834,0.99821,-0.059446,15.318,0.054852,0.059677,0.99671,17.531
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 1/Chimera Session V2/0N80_HSA.png" width 3600 height 2686
> supersample 3 transparentBackground true
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 1/Chimera Session V2/0N80_HSA.png" width 3600 height 2686
> supersample 3
> hide #!1 models
> show #!10 models
> view matrix models
> #1,0.99848,0.002554,-0.055102,24.086,-0.005834,0.99821,-0.059446,21.606,0.054852,0.059677,0.99671,7.1292
> view matrix models
> #1,0.99848,0.002554,-0.055102,5.6807,-0.005834,0.99821,-0.059446,26.158,0.054852,0.059677,0.99671,-1.8649
> view matrix models
> #1,0.99848,0.002554,-0.055102,-32.619,-0.005834,0.99821,-0.059446,46.065,0.054852,0.059677,0.99671,-2.6764
> view matrix models
> #1,0.99848,0.002554,-0.055102,-67.761,-0.005834,0.99821,-0.059446,61.29,0.054852,0.059677,0.99671,-8.8338
> select add #10
68249 atoms, 70156 bonds, 17 pseudobonds, 8125 residues, 9 models selected
> select add #1
114335 atoms, 117752 bonds, 34 pseudobonds, 13459 residues, 33 models selected
> select subtract #1
55996 atoms, 57633 bonds, 14 pseudobonds, 6600 residues, 32 models selected
> view matrix models
> #10,0.98483,-0.12885,-0.11623,37.367,0.11868,0.9888,-0.090544,10.581,0.1266,0.075375,0.98909,-29.439
> select clear
> select #10/K,L,M,O
6565 atoms, 6712 bonds, 4 pseudobonds, 829 residues, 3 models selected
> hide sel cartoons
> select #10/N
5060 atoms, 5173 bonds, 626 residues, 1 model selected
> hide sel cartoons
> view matrix models
> #10,0.98483,-0.12885,-0.11623,20.474,0.11868,0.9888,-0.090544,33.043,0.1266,0.075375,0.98909,-49.921
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 1/Chimera Session V2/0N40_HSA.png" width 3600 height 2686
> supersample 3
> select #10/N,K,L,M,O
11625 atoms, 11885 bonds, 4 pseudobonds, 1455 residues, 3 models selected
> show sel cartoons
> select clear
> select #10/N,K,L,M,O
11625 atoms, 11885 bonds, 4 pseudobonds, 1455 residues, 3 models selected
> color (#!10 & sel) gray
> select clear
> show #!1 models
> select add #1
58339 atoms, 60119 bonds, 20 pseudobonds, 6859 residues, 2 models selected
> view matrix models
> #1,0.99848,0.002554,-0.055102,-34.947,-0.005834,0.99821,-0.059446,32.857,0.054852,0.059677,0.99671,-30.505
> select subtract #1
5 models selected
> select #1/A-H
5893 atoms, 5968 bonds, 1 pseudobond, 747 residues, 2 models selected
> hide sel cartoons
> select #2/A-H
Nothing selected
> select #10/A-H
5876 atoms, 5951 bonds, 1 pseudobond, 745 residues, 2 models selected
> hide sel cartoons
> select #10/I,J
6601 atoms, 7404 bonds, 322 residues, 1 model selected
> ui tool show "Color Actions"
> color sel slate gray
> color sel light slate gray
> color sel light steel blue
[Repeated 1 time(s)]
> color sel light blue
> color sel light steel blue
> color sel light gray
> select clear
> ui mousemode right select
Drag select of 9 residues, 14 shapes
> select up
6601 atoms, 7404 bonds, 322 residues, 3 models selected
> select down
185 atoms, 9 residues, 3 models selected
> hide sel atoms
> select #10/I,J
6601 atoms, 7404 bonds, 322 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> select #1/K,L,M,O
12253 atoms, 12523 bonds, 3 pseudobonds, 1525 residues, 2 models selected
> show sel cartoons
> select clear
> select #1/K,L,M,O
12253 atoms, 12523 bonds, 3 pseudobonds, 1525 residues, 2 models selected
> hide sel cartoons
> show sel surfaces
> color (#!1 & sel) white
> transparency (#!1 & sel) 100
> select clear
> select #10/N,K,L,M,O
11625 atoms, 11885 bonds, 4 pseudobonds, 1455 residues, 3 models selected
> hide sel cartoons
> show sel surfaces
> color (#!10 & sel) white
> transparency (#!10 & sel) 100
> select clear
> select #1/Q:482, 483, 487, 490, 504, 505, 512, 515, 522, 545, 544, 537, 534,
> 533, 526, 523
160 atoms, 150 bonds, 16 residues, 1 model selected
> transparency (#!1 & sel) 50
> select clear
> select #2/Q:482, 483, 487, 490, 504, 505, 512, 515, 522, 545, 544, 537, 534,
> 533, 526, 523
Nothing selected
> transparency 50
> select clear
> lighting soft
> lighting simple
> lighting soft
> lighting full
> lighting flat
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting simple
> lighting soft
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 1/Chimera Session V2/HSa.cxs" includeMaps true
——— End of log from Sat Dec 21 19:42:25 2024 ———
opened ChimeraX session
> select #10/K,L,M,O
6565 atoms, 6712 bonds, 4 pseudobonds, 829 residues, 3 models selected
> hide sel atoms
> hide sel cartoons
> hide sel surfaces
> select #10/K,L,M,O,N
11625 atoms, 11885 bonds, 4 pseudobonds, 1455 residues, 3 models selected
> hide sel surfaces
> select #10/Q:0-700
1105 atoms, 1118 bonds, 130 residues, 1 model selected
> coulombic sel
The following residues are missing heavy (non-hydrogen) atoms, which may
result in inaccurate electrostatics:
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q LYS 707
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q ARG 802
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q ASN 804
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q VAL 824
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q ARG 863
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q ARG 865
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q ASP 896
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q GLU 897
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q LYS 947
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q ARG 959
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q ARG 1293
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q LYS 1300
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q ASP 1305
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q ARG 1317
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q LYS 1326
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q MET 1327
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q GLN 1403
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q ARG 1407
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q LEU 1423
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q ILE 1428
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q ARG 1431
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q ARG 1433
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q ARG 1435
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q LYS 1437
042624-x40-wt-adpbef-withadpbef-final.pdb #10/Q LYS 1439
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for 042624-x40-wt-adpbef-withadpbef-final.pdb_Q SES surface
#10.17: minimum, -21.85, mean -0.46, maximum 18.53
To also show corresponding color key, enter the above coulombic command and
add key true
> transparency (#!10 & sel) 50
> select clear
> select #10/K,L,M,O,N
11625 atoms, 11885 bonds, 4 pseudobonds, 1455 residues, 3 models selected
> show sel cartoons
> select clear
> select #10/Q:0-700
1105 atoms, 1118 bonds, 130 residues, 1 model selected
> hide sel cartoons
> select #10/Q:0-700
1105 atoms, 1118 bonds, 130 residues, 1 model selected
> hide sel atoms
> select clear
> transparency 0
> ui tool show "Side View"
> select #1/Q:0-700
957 atoms, 969 bonds, 118 residues, 1 model selected
> coulombic sel
The following residues are missing heavy (non-hydrogen) atoms, which may
result in inaccurate electrostatics:
121124-0n80-xe-wt-adpbef-final-coot-0-pymol-shortdna.pdb #1/Q LYS 707
121124-0n80-xe-wt-adpbef-final-coot-0-pymol-shortdna.pdb #1/Q ARG 802
121124-0n80-xe-wt-adpbef-final-coot-0-pymol-shortdna.pdb #1/Q ASN 804
121124-0n80-xe-wt-adpbef-final-coot-0-pymol-shortdna.pdb #1/Q VAL 824
121124-0n80-xe-wt-adpbef-final-coot-0-pymol-shortdna.pdb #1/Q ARG 863
121124-0n80-xe-wt-adpbef-final-coot-0-pymol-shortdna.pdb #1/Q ARG 865
121124-0n80-xe-wt-adpbef-final-coot-0-pymol-shortdna.pdb #1/Q ASP 896
121124-0n80-xe-wt-adpbef-final-coot-0-pymol-shortdna.pdb #1/Q GLU 897
121124-0n80-xe-wt-adpbef-final-coot-0-pymol-shortdna.pdb #1/Q ARG 1008
121124-0n80-xe-wt-adpbef-final-coot-0-pymol-shortdna.pdb #1/Q LYS 1326
121124-0n80-xe-wt-adpbef-final-coot-0-pymol-shortdna.pdb #1/Q TRP 1396
121124-0n80-xe-wt-adpbef-final-coot-0-pymol-shortdna.pdb #1/Q ARG 1431
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for 121124-0n80-xe-wt-adpbef-final-coot-0-pymol-
shortdna.pdb_Q SES surface #1.2: minimum, -20.01, mean -0.29, maximum 21.82
To also show corresponding color key, enter the above coulombic command and
add key true
> select #1/K,L,M,O
12253 atoms, 12523 bonds, 3 pseudobonds, 1525 residues, 2 models selected
> hide sel surfaces
> show sel cartoons
> select clear
> transparency 10
> transparency 0
> select #1/Q:0-700
957 atoms, 969 bonds, 118 residues, 1 model selected
> hide sel cartoons
> transparency (#!1 & sel) 10
> hide sel atoms
> select clear
> select #1/K
5614 atoms, 5735 bonds, 1 pseudobond, 692 residues, 2 models selected
> ui tool show "Color Actions"
> color sel medium blue
> select #1/L
2862 atoms, 2925 bonds, 1 pseudobond, 364 residues, 2 models selected
> color sel khaki
> select #1/M
3430 atoms, 3507 bonds, 1 pseudobond, 429 residues, 2 models selected
> color sel deep sky blue
> select #1/O
347 atoms, 356 bonds, 40 residues, 1 model selected
> color sel dark blue
> select clear
> transparency #1/K,L,M,O 30 cartoons
> transparency #1/K,L,M,O 70 cartoons
> transparency #1/K,L,M,O 80 cartoons
> select clear
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/HSA_0N80.png" width 3600
> height 3544 supersample 3
No map chosen to save
> save /Users/upneet/Desktop/test.jpg width 3600 height 3544 supersample 3
> save /Users/upneet/Desktop/test.tif width 3600 height 3544 supersample 3
> select #1/N
Nothing selected
> color medium blue
> undo
> select #10/N
5060 atoms, 5173 bonds, 626 residues, 1 model selected
> color sel medium blue
> select #10/L
2824 atoms, 2886 bonds, 1 pseudobond, 361 residues, 2 models selected
> color sel khaki
> select #10/O
287 atoms, 296 bonds, 34 residues, 1 model selected
> color sel deep sky blue
> select #10/M
3422 atoms, 3498 bonds, 1 pseudobond, 431 residues, 2 models selected
> color sel deep sky blue
> select #10/O
287 atoms, 296 bonds, 34 residues, 1 model selected
> color sel dark blue
> select clear
> transparency #10/N,L,M,O 80 cartoons
> select clear
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/HSA_0N40.png" width 3600
> height 3544 supersample 3
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/mix-dataset/mix-global-refine.mrc"
Opened mix-global-refine.mrc as #2, grid size 448,448,448, pixel 0.835, shown
at level 0.00458, step 2, values float32
> close #2
> open "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 2/Version 2- Resubmission/0_80_ApovsADPBeF_Maps.cxs"
Opened x0_80_ADPBeF_A8-Split.mrc as #1, grid size 480,480,480, pixel 0.835,
shown at level 0.00261, step 1, values float32
Opened x0_80_ADPBeF_Ies2.mrc as #3, grid size 480,480,480, pixel 0.835, shown
at level 0.348, step 1, values float32
Opened 041924-global-resampleonapo.mrc 0 as #5.1, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 1 as #5.2, grid size 480,480,480, pixel
0.835, shown at level 0.238, step 1, values float32
Opened 041924-global-resampleonapo.mrc 2 as #5.3, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 3 as #5.4, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 4 as #5.5, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 5 as #5.6, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 6 as #5.7, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 7 as #5.8, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 8 as #5.9, grid size 480,480,480, pixel
0.835, shown at level 0.235, step 1, values float32
Opened 041924-global-resampleonapo.mrc 9 as #5.10, grid size 480,480,480,
pixel 0.835, shown at level 0.174, step 1, values float32
Opened x0_80_ADPBeF_nuc.mrc as #6, grid size 480,480,480, pixel 0.835, shown
at level 1.44, step 1, values float32
Opened y0_80_ADPBeF_Core.mrc as #7, grid size 448,448,448, pixel 0.835, shown
at level 0.186, step 1, values float32
Opened y0_80_ADPBeF_Core-filter.mrc as #8, grid size 256,256,256, pixel 1.67,
shown at level 0.0143, step 1, values float32
Opened y0_80_Apo_A8-split.mrc as #10, grid size 512,512,512, pixel 0.819,
shown at level 0.0016, step 1, values float32
Opened y0_80_Apo_core_nuc.mrc as #11, grid size 512,512,512, pixel 0.819,
shown at level 0.157, step 1, values float32
Opened 122324-x80-apo-a8-split-resample.mrc as #12, grid size 480,480,480,
pixel 0.835, shown at level 0.00122, step 1, values float32
Opened 122324-x80-apo-arp5-resample.mrc as #13, grid size 480,480,480, pixel
0.835, shown at level 0.0832, step 1, values float32
Opened 122324-x80-apo-atpasehighres-resample.mrc as #14, grid size
480,480,480, pixel 0.835, shown at level 0.0212, step 1, values float32
Opened 122324-x80-apo-dna-resample.mrc as #15, grid size 480,480,480, pixel
0.835, shown at level 0.847, step 1, values float32
Opened 122324-x80-apo-grappler-resample.mrc as #16, grid size 480,480,480,
pixel 0.835, shown at level 0.11, step 1, values float32
Opened 122324-x80-apo-histone-resample.mrc as #17, grid size 480,480,480,
pixel 0.835, shown at level 1.29, step 1, values float32
Opened 122324-x80-apo-i2highres-resample.mrc as #18, grid size 480,480,480,
pixel 0.835, shown at level 0.104, step 1, values float32
Opened 122324-x80-apo-rvb-resample.mrc as #20, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 122324-x80-ies2lowres-resample.mrc as #21, grid size 480,480,480, pixel
0.835, shown at level 0.00032, step 1, values float32
opened ChimeraX session
> open "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 2/Version 2- Resubmission/0_80_ApovsADPBeF_Maps.cxs"
Opened x0_80_ADPBeF_A8-Split.mrc as #1, grid size 480,480,480, pixel 0.835,
shown at level 0.00261, step 1, values float32
Opened x0_80_ADPBeF_Ies2.mrc as #3, grid size 480,480,480, pixel 0.835, shown
at level 0.348, step 1, values float32
Opened 041924-global-resampleonapo.mrc 0 as #5.1, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 1 as #5.2, grid size 480,480,480, pixel
0.835, shown at level 0.238, step 1, values float32
Opened 041924-global-resampleonapo.mrc 2 as #5.3, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 3 as #5.4, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 4 as #5.5, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 5 as #5.6, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 6 as #5.7, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 7 as #5.8, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 8 as #5.9, grid size 480,480,480, pixel
0.835, shown at level 0.235, step 1, values float32
Opened 041924-global-resampleonapo.mrc 9 as #5.10, grid size 480,480,480,
pixel 0.835, shown at level 0.174, step 1, values float32
Opened x0_80_ADPBeF_nuc.mrc as #6, grid size 480,480,480, pixel 0.835, shown
at level 1.44, step 1, values float32
Opened y0_80_ADPBeF_Core.mrc as #7, grid size 448,448,448, pixel 0.835, shown
at level 0.186, step 1, values float32
Opened y0_80_ADPBeF_Core-filter.mrc as #8, grid size 256,256,256, pixel 1.67,
shown at level 0.0143, step 1, values float32
Opened y0_80_Apo_A8-split.mrc as #10, grid size 512,512,512, pixel 0.819,
shown at level 0.0016, step 1, values float32
Opened y0_80_Apo_core_nuc.mrc as #11, grid size 512,512,512, pixel 0.819,
shown at level 0.157, step 1, values float32
Opened 122324-x80-apo-a8-split-resample.mrc as #12, grid size 480,480,480,
pixel 0.835, shown at level 0.00122, step 1, values float32
Opened 122324-x80-apo-arp5-resample.mrc as #13, grid size 480,480,480, pixel
0.835, shown at level 0.0832, step 1, values float32
Opened 122324-x80-apo-atpasehighres-resample.mrc as #14, grid size
480,480,480, pixel 0.835, shown at level 0.0212, step 1, values float32
Opened 122324-x80-apo-dna-resample.mrc as #15, grid size 480,480,480, pixel
0.835, shown at level 0.847, step 1, values float32
Opened 122324-x80-apo-grappler-resample.mrc as #16, grid size 480,480,480,
pixel 0.835, shown at level 0.11, step 1, values float32
Opened 122324-x80-apo-histone-resample.mrc as #17, grid size 480,480,480,
pixel 0.835, shown at level 1.29, step 1, values float32
Opened 122324-x80-apo-i2highres-resample.mrc as #18, grid size 480,480,480,
pixel 0.835, shown at level 0.104, step 1, values float32
Opened 122324-x80-apo-rvb-resample.mrc as #20, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 122324-x80-ies2lowres-resample.mrc as #21, grid size 480,480,480, pixel
0.835, shown at level 0.00032, step 1, values float32
opened ChimeraX session
> volume #10 level 0.002171
> volume #10 level 0.002364
> hide #!10 models
> hide #!11 models
> show #!20 models
> show #!21 models
> show #!19 models
> hide #!19 models
> show #!18 models
> show #!17 models
> show #!16 models
> show #!15 models
> show #!14 models
> show #!13 models
> show #!12 models
> hide #!12 models
> hide #!13 models
> hide #!14 models
> hide #!15 models
> hide #!16 models
> hide #!17 models
> hide #!18 models
> hide #!20 models
> hide #!21 models
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/mix-dataset/mix-global-refine.mrc"
Opened mix-global-refine.mrc as #22, grid size 448,448,448, pixel 0.835, shown
at level 0.00458, step 2, values float32
> close #22
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 2/Version 2- Resubmission/0_80_ApovsADPBeF_Maps.cxs"
Opened x0_80_ADPBeF_A8-Split.mrc as #1, grid size 480,480,480, pixel 0.835,
shown at level 0.00261, step 1, values float32
Opened x0_80_ADPBeF_Ies2.mrc as #3, grid size 480,480,480, pixel 0.835, shown
at level 0.348, step 1, values float32
Opened 041924-global-resampleonapo.mrc 0 as #5.1, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 1 as #5.2, grid size 480,480,480, pixel
0.835, shown at level 0.238, step 1, values float32
Opened 041924-global-resampleonapo.mrc 2 as #5.3, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 3 as #5.4, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 4 as #5.5, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 5 as #5.6, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 6 as #5.7, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 7 as #5.8, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 8 as #5.9, grid size 480,480,480, pixel
0.835, shown at level 0.235, step 1, values float32
Opened 041924-global-resampleonapo.mrc 9 as #5.10, grid size 480,480,480,
pixel 0.835, shown at level 0.174, step 1, values float32
Opened x0_80_ADPBeF_nuc.mrc as #6, grid size 480,480,480, pixel 0.835, shown
at level 1.44, step 1, values float32
Opened y0_80_ADPBeF_Core.mrc as #7, grid size 448,448,448, pixel 0.835, shown
at level 0.186, step 1, values float32
Opened y0_80_ADPBeF_Core-filter.mrc as #8, grid size 256,256,256, pixel 1.67,
shown at level 0.0143, step 1, values float32
Opened y0_80_Apo_A8-split.mrc as #10, grid size 512,512,512, pixel 0.819,
shown at level 0.0016, step 1, values float32
Opened y0_80_Apo_core_nuc.mrc as #11, grid size 512,512,512, pixel 0.819,
shown at level 0.157, step 1, values float32
Opened 122324-x80-apo-a8-split-resample.mrc as #12, grid size 480,480,480,
pixel 0.835, shown at level 0.00122, step 1, values float32
Opened 122324-x80-apo-arp5-resample.mrc as #13, grid size 480,480,480, pixel
0.835, shown at level 0.0832, step 1, values float32
Opened 122324-x80-apo-atpasehighres-resample.mrc as #14, grid size
480,480,480, pixel 0.835, shown at level 0.0212, step 1, values float32
Opened 122324-x80-apo-dna-resample.mrc as #15, grid size 480,480,480, pixel
0.835, shown at level 0.847, step 1, values float32
Opened 122324-x80-apo-grappler-resample.mrc as #16, grid size 480,480,480,
pixel 0.835, shown at level 0.11, step 1, values float32
Opened 122324-x80-apo-histone-resample.mrc as #17, grid size 480,480,480,
pixel 0.835, shown at level 1.29, step 1, values float32
Opened 122324-x80-apo-i2highres-resample.mrc as #18, grid size 480,480,480,
pixel 0.835, shown at level 0.104, step 1, values float32
Opened 122324-x80-apo-rvb-resample.mrc as #20, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 122324-x80-ies2lowres-resample.mrc as #21, grid size 480,480,480, pixel
0.835, shown at level 0.00032, step 1, values float32
Log from Mon Dec 30 10:55:42 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 2/Version 2- Resubmission/0_80_ApovsADPBeF_Maps.cxs"
Opened x0_80_ADPBeF_A8-Split.mrc as #1, grid size 480,480,480, pixel 0.835,
shown at level 0.00261, step 1, values float32
Opened x0_80_ADPBeF_Ies2.mrc as #3, grid size 480,480,480, pixel 0.835, shown
at level 0.348, step 1, values float32
Opened 041924-global-resampleonapo.mrc 0 as #5.1, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 1 as #5.2, grid size 480,480,480, pixel
0.835, shown at level 0.238, step 1, values float32
Opened 041924-global-resampleonapo.mrc 2 as #5.3, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 3 as #5.4, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 4 as #5.5, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 5 as #5.6, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 6 as #5.7, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 7 as #5.8, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 8 as #5.9, grid size 480,480,480, pixel
0.835, shown at level 0.235, step 1, values float32
Opened 041924-global-resampleonapo.mrc 9 as #5.10, grid size 480,480,480,
pixel 0.835, shown at level 0.174, step 1, values float32
Opened x0_80_ADPBeF_nuc.mrc as #6, grid size 480,480,480, pixel 0.835, shown
at level 1.44, step 1, values float32
Opened y0_80_ADPBeF_Core.mrc as #7, grid size 448,448,448, pixel 0.835, shown
at level 0.167, step 2, values float32
Opened y0_80_ADPBeF_Core-filter.mrc as #8, grid size 256,256,256, pixel 1.67,
shown at level 0.0143, step 1, values float32
Opened y0_80_Apo_A8-split.mrc as #10, grid size 512,512,512, pixel 0.819,
shown at level 0.000899, step 1, values float32
Opened y0_80_Apo_core_nuc.mrc as #11, grid size 512,512,512, pixel 0.819,
shown at level 0.147, step 1, values float32
Opened 122324-x80-apo-a8-split-resample.mrc as #12, grid size 480,480,480,
pixel 0.835, shown at level 0.00122, step 1, values float32
Opened 122324-x80-apo-arp5-resample.mrc as #13, grid size 480,480,480, pixel
0.835, shown at level 0.0832, step 1, values float32
Opened 122324-x80-apo-atpasehighres-resample.mrc as #14, grid size
480,480,480, pixel 0.835, shown at level 0.0212, step 1, values float32
Opened 122324-x80-apo-dna-resample.mrc as #15, grid size 480,480,480, pixel
0.835, shown at level 0.847, step 1, values float32
Opened 122324-x80-apo-grappler-resample.mrc as #16, grid size 480,480,480,
pixel 0.835, shown at level 0.11, step 1, values float32
Opened 122324-x80-apo-histone-resample.mrc as #17, grid size 480,480,480,
pixel 0.835, shown at level 1.29, step 1, values float32
Opened 122324-x80-apo-i2highres-resample.mrc as #18, grid size 480,480,480,
pixel 0.835, shown at level 0.104, step 1, values float32
Opened 122324-x80-apo-rvb-resample.mrc as #20, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 122324-x80-ies2lowres-resample.mrc as #21, grid size 480,480,480, pixel
0.835, shown at level 0.00032, step 1, values float32
Log from Mon Dec 30 10:34:25 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 2/Version 2- Resubmission/0_80_ApovsADPBeF_Maps.cxs"
Opened x0_80_ADPBeF_A8-Split.mrc as #1, grid size 480,480,480, pixel 0.835,
shown at level 0.00375, step 1, values float32
Opened x0_80_ADPBeF_Ies2.mrc as #3, grid size 480,480,480, pixel 0.835, shown
at level 0.348, step 1, values float32
Opened 041924-global-resampleonapo.mrc 0 as #5.1, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 1 as #5.2, grid size 480,480,480, pixel
0.835, shown at level 0.238, step 1, values float32
Opened 041924-global-resampleonapo.mrc 2 as #5.3, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 3 as #5.4, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 4 as #5.5, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 5 as #5.6, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 6 as #5.7, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 7 as #5.8, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 8 as #5.9, grid size 480,480,480, pixel
0.835, shown at level 0.235, step 1, values float32
Opened 041924-global-resampleonapo.mrc 9 as #5.10, grid size 480,480,480,
pixel 0.835, shown at level 0.174, step 1, values float32
Opened x0_80_ADPBeF_nuc.mrc as #6, grid size 480,480,480, pixel 0.835, shown
at level 1.44, step 1, values float32
Opened y0_80_ADPBeF_Core.mrc as #7, grid size 448,448,448, pixel 0.835, shown
at level 0.167, step 2, values float32
Opened y0_80_ADPBeF_Core-filter.mrc as #8, grid size 256,256,256, pixel 1.67,
shown at level 0.0143, step 1, values float32
Opened y0_80_Apo_A8-split.mrc as #10, grid size 512,512,512, pixel 0.819,
shown at level 0.000444, step 2, values float32
Opened y0_80_Apo_core_nuc.mrc as #11, grid size 512,512,512, pixel 0.819,
shown at level 0.0802, step 2, values float32
Opened 122324-x80-apo-a8-split-resample.mrc as #12, grid size 480,480,480,
pixel 0.835, shown at level 0.000239, step 2, values float32
Opened 122324-x80-apo-arp5-resample.mrc as #13, grid size 480,480,480, pixel
0.835, shown at level 0.000123, step 2, values float32
Opened 122324-x80-apo-atpasehighres-resample.mrc as #14, grid size
480,480,480, pixel 0.835, shown at level 0.000139, step 2, values float32
Opened 122324-x80-apo-dna-resample.mrc as #15, grid size 480,480,480, pixel
0.835, shown at level 0.000354, step 2, values float32
Opened 122324-x80-apo-grappler-resample.mrc as #16, grid size 480,480,480,
pixel 0.835, shown at level 3.54e-05, step 2, values float32
Opened 122324-x80-apo-histone-resample.mrc as #17, grid size 480,480,480,
pixel 0.835, shown at level 0.000232, step 2, values float32
Opened 122324-x80-apo-i2highres-resample.mrc as #18, grid size 480,480,480,
pixel 0.835, shown at level 3.03e-06, step 2, values float32
Opened 122324-x80-apo-rvb-resample.mrc as #20, grid size 480,480,480, pixel
0.835, shown at level 7.73e-05, step 2, values float32
Opened 122324-x80-ies2lowres-resample.mrc as #21, grid size 480,480,480, pixel
0.835, shown at level 2.62e-07, step 2, values float32
Log from Sun Dec 29 17:47:13 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Figure1.cxs"
Opened 121124-a8-split_xl080.mrc as #1, grid size 480,480,480, pixel 0.835,
shown at level 0.00375, step 1, values float32
Opened ies2-x80-lowres.mrc as #3, grid size 480,480,480, pixel 0.835, shown at
level 0.348, step 1, values float32
Opened 041924-global-resampleonapo.mrc 0 as #5.1, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 1 as #5.2, grid size 480,480,480, pixel
0.835, shown at level 0.238, step 1, values float32
Opened 041924-global-resampleonapo.mrc 2 as #5.3, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 3 as #5.4, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 4 as #5.5, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 5 as #5.6, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 6 as #5.7, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 7 as #5.8, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 8 as #5.9, grid size 480,480,480, pixel
0.835, shown at level 0.235, step 1, values float32
Opened 041924-global-resampleonapo.mrc 9 as #5.10, grid size 480,480,480,
pixel 0.835, shown at level 0.174, step 1, values float32
Opened 041924-nuc-resampleonapo_xl080.mrc as #6, grid size 480,480,480, pixel
0.835, shown at level 1.44, step 1, values float32
Opened 121124-a8-split_Xl040.mrc as #4, grid size 448,448,448, pixel 0.831,
shown at level 0.00268, step 1, values float32
Opened onlyies2-lowres-Xl040.mrc as #7, grid size 448,448,448, pixel 0.831,
shown at level 0.0519, step 1, values float32
Opened onlynuc_Xl040.mrc as #8, grid size 448,448,448, pixel 0.831, shown at
level 0.411, step 1, values float32
Opened inocore_Xl040.mrc as #9, grid size 448,448,448, pixel 0.831, shown at
level 0.218, step 1, values float32
Log from Sat Dec 28 15:21:23 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Figure1.cxs"
Opened 121124-a8-split_xl080.mrc as #1, grid size 480,480,480, pixel 0.835,
shown at level 0.00375, step 1, values float32
Opened ies2-x80-lowres.mrc as #3, grid size 480,480,480, pixel 0.835, shown at
level 0.348, step 1, values float32
Opened 041924-global-resampleonapo.mrc 0 as #5.1, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 1 as #5.2, grid size 480,480,480, pixel
0.835, shown at level 0.238, step 1, values float32
Opened 041924-global-resampleonapo.mrc 2 as #5.3, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 3 as #5.4, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 4 as #5.5, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 5 as #5.6, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 6 as #5.7, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 7 as #5.8, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 8 as #5.9, grid size 480,480,480, pixel
0.835, shown at level 0.235, step 1, values float32
Opened 041924-global-resampleonapo.mrc 9 as #5.10, grid size 480,480,480,
pixel 0.835, shown at level 0.174, step 1, values float32
Opened 041924-nuc-resampleonapo_xl080.mrc as #6, grid size 480,480,480, pixel
0.835, shown at level 1.44, step 1, values float32
Opened 121124-a8-split_Xl040.mrc as #4, grid size 448,448,448, pixel 0.831,
shown at level 0.0026, step 1, values float32
Opened onlyies2-lowres-Xl040.mrc as #7, grid size 448,448,448, pixel 0.831,
shown at level 0.0519, step 1, values float32
Opened onlynuc_Xl040.mrc as #8, grid size 448,448,448, pixel 0.831, shown at
level 0.411, step 1, values float32
Opened inocore_Xl040.mrc as #9, grid size 448,448,448, pixel 0.831, shown at
level 0.218, step 1, values float32
Log from Thu Dec 12 15:18:18 2024 Startup Messages
---
warnings | Replacing fetcher for 'ngff' and format OME-Zarr from OME-Zarr bundle with that from OME-Zarr bundle
Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with
that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/wtINO80-0N80-Yeast-Apo/121124-a8-split.mrc"
Opened 121124-a8-split.mrc as #1, grid size 512,512,512, pixel 0.819, shown at
level 0.000444, step 2, values float32
> set bgColor white
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/wtINO80-0N80-Yeast-Apo/120524-inocore-nuc-3.16A.mrc"
Opened 120524-inocore-nuc-3.16A.mrc as #2, grid size 512,512,512, pixel 0.819,
shown at level 0.0802, step 2, values float32
> volume #1 step 1
> volume #2 step 1
> volume #1 level 0.001846
> surface dust #1 size 8.19
> surface dust #2 size 8.19
> volume #2 level 0.1187
> volume #1 level 0.002828
> volume #2 level 0.1524
> volume #2 level 0.1596
> volume #2 level 0.1741
> color #2 silver models
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/wtINO80-0N80-Yeast-Apo/120524-final-ino80-0y80-apo-512box.pdb"
Chain information for 120524-final-ino80-0y80-apo-512box.pdb #3
---
Chain | Description
A E | No description available
B F | No description available
C | No description available
D H | No description available
G | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
O | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
> volume #1 level 0.003126
> hide #!1 models
> hide #!2 models
> hide atoms
> show cartoons
> select #3/A-H,T-Y
26415 atoms, 26739 bonds, 2 pseudobonds, 3403 residues, 2 models selected
> ui tool show "Color Actions"
> color sel light gray
> select #3/I,J
7702 atoms, 8638 bonds, 1 pseudobond, 376 residues, 2 models selected
> color sel slate gray
> show sel atoms
> hide sel atoms
> nucleotides sel atoms
> style nucleic & sel stick
Changed 7702 atom styles
> nucleotides sel ladder
> show sel atoms
> select #3/Q
6141 atoms, 6266 bonds, 8 pseudobonds, 758 residues, 2 models selected
> color sel fire brick
> select #3/Z
464 atoms, 469 bonds, 1 pseudobond, 72 residues, 2 models selected
> color sel fire brick
> color sel orange
> select #3/R,S
4527 atoms, 4639 bonds, 2 pseudobonds, 570 residues, 2 models selected
> color sel medium sea green
> select #3/K
5092 atoms, 5206 bonds, 628 residues, 1 model selected
> color sel medium blue
> select #3/L
2856 atoms, 2919 bonds, 1 pseudobond, 363 residues, 2 models selected
> color sel gold
> select #3/M
3454 atoms, 3531 bonds, 1 pseudobond, 433 residues, 2 models selected
> color sel deep sky blue
> select #3/N
Nothing selected
> color dim gray
> undo
> select #3/O
287 atoms, 296 bonds, 34 residues, 1 model selected
> color sel dim gray
> select clear
> show #!2 models
> show #!1 models
> ui tool show "Color Zone"
> color zone #1 near #3 distance 4.91
> color zone #1 near #3 distance 4.81
> color zone #1 near #3 distance 4.71
> color zone #1 near #3 distance 4.61
> color zone #1 near #3 distance 4.51
> color zone #1 near #3 distance 4.41
> color zone #1 near #3 distance 4.31
> color zone #1 near #3 distance 4.21
> color zone #1 near #3 distance 4.11
> color zone #1 near #3 distance 4.01
> color zone #1 near #3 distance 3.91
> color zone #1 near #3 distance 3.81
> color zone #1 near #3 distance 3.71
> color zone #1 near #3 distance 3.61
> color zone #1 near #3 distance 3.51
> color zone #1 near #3 distance 3.41
> color zone #1 near #3 distance 3.83
> color zone #1 near #3 distance 9.39
> color zone #1 near #3 distance 1
> color zone #1 near #3 distance 10
[Repeated 1 time(s)]
> volume #1 level 0.00344
> color zone #2 near #3 distance 4.91
> volume #1 level 0.003283
> lighting simple
> lighting soft
> lighting simple
> lighting soft
> ui tool show "Side View"
> hide #!3 models
> color #1 #b2b2b224 models
> color #1 #b2b2b297 models
> color #1 #b2b2b296 models
> undo
[Repeated 4 time(s)]
> color zone #1 near #3 distance 10
> volume #2 level 0.1046
> volume #2 level 0.1313
> volume #2 level 0.1607
> volume #2 level 0.118
> volume #2 level 0.1287
> volume #2 level 0.15
> volume #2 level 0.1634
No map chosen to save
> save /Users/upneet/Desktop/test.png width 3600 height 2697 supersample 3
> transparentBackground true
> hide #!2 models
> hide #!1 models
> show #!3 models
> hide #!3 models
> show #!1 models
> show #!3 models
> hide #!1 models
> show #!1 models
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/WT-0N80Xe-ADPBeF/121124-a8-split.mrc"
Opened 121124-a8-split.mrc as #4, grid size 480,480,480, pixel 0.835, shown at
level 0.000837, step 2, values float32
> volume #4 level 0.003553
> volume #4 step 1
> hide #!3 models
> hide #!4 models
> hide #!1 models
> show #!4 models
> volume #4 level 0.003726
> volume #4 level 0.003661
> color #4 silver models
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/INO-40yeastnuc-ADPBeF/121124-a8-split.mrc"
Opened 121124-a8-split.mrc as #5, grid size 480,480,480, pixel 0.835, shown at
level 4.83e-07, step 2, values float32
> volume #5 level 0.003775
> volume #5 level 0.003851
> hide #!4 models
> hide #!5 models
> show #!3 models
> select ::name="ARG"
3893 atoms, 3559 bonds, 362 residues, 1 model selected
> ui mousemode right select
> select clear
Drag select of 1 residues
> show sel surfaces
> hide sel surfaces
> style sel stick
Changed 11 atom styles
> show sel atoms
> color sel byhetero
> hide #!3 models
> show #!1 models
> show #!2 models
> close #1-5
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/WT-0N80Xe-ADPBeF/121124-a8-split.mrc"
Opened 121124-a8-split.mrc as #1, grid size 480,480,480, pixel 0.835, shown at
level 4.88e-06, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/WT-0N80Xe-ADPBeF/121124-0n80-xe-wt-adpbef-final-coot-0-pymol-
> shortdna.pdb"
Chain information for 121124-0n80-xe-wt-adpbef-final-coot-0-pymol-shortdna.pdb
#2
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
O | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
> hide atoms
> show cartoons
> volume #1 step 1
> volume #1 level 0.004082
> hide #!2 models
> show #!2 models
> hide #!1 models
> color #2/Q firebrick
> color #2/Q firebrick, #2/R,S seagreen
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #2/Q firebrick
> color #2/R,S medium seagreen
> color #2/T-Y, A-H grey
> color #2/T-Y, A-H lightr grey
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #2/T-Y, A-H light grey
> color #2/Z orange
> color #2/k medium blue
> color #2/L gold
> color #2/N deep skyblue
> color #2/M deep skyblue
[Repeated 1 time(s)]
> color #2/O grey
> color #2/I,J slate blue
> color #2/I,J slate grey
> select #2/I,J
7787 atoms, 8735 bonds, 380 residues, 1 model selected
> nucleotides sel ladder
> show sel atoms
> select clear
[Repeated 2 time(s)]
> show #!1 models
> ui tool show "Color Zone"
> color zone #1 near #2 distance 5.01
> color zone #1 near #2 distance 5.19
> color zone #1 near #2 distance 11.56
> color zone #1 near #2 distance 11.7
[Repeated 1 time(s)]
> color zone #1 near #2 distance 1
> color zone #1 near #2 distance 10
[Repeated 1 time(s)]
> color zone #1 near #2 distance 1
> color zone #1 near #2 distance 15
[Repeated 1 time(s)]
> volume #1 level 0.004276
> volume #1 level 0.004216
> volume #1 level 0.003992
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/WT-0N80Xe-ADPBeF/ies2-x80-lowres.mrc"
Opened ies2-x80-lowres.mrc as #3, grid size 480,480,480, pixel 0.835, shown at
level 5.64e-05, step 2, values float32
> volume #3 step 1
> volume #3 level 0.3484
> hide #!3 models
> volume #1 level 0.003664
> surface dust #1 size 8.35
> volume #1 level 0.003843
> volume #1 level 0.003873
> ui tool show "Side View"
> volume #1 level 0.003754
> volume #1 level 0.003664
> surface dust #1 size 8.35
> volume #1 level 0.003754
> select #2/L
2862 atoms, 2925 bonds, 1 pseudobond, 364 residues, 2 models selected
> ui tool show "Color Actions"
> color sel sandy brown
> color zone #1 near #2 distance 15
> color sel navajo white
> color zone #1 near #2 distance 15
> hide #!1 models
> show #!1 models
> color sel goldenrod
> color zone #1 near #2 distance 15
> color sel orange
> color zone #1 near #2 distance 15
> color (#!2 & sel) #ffd479ff
> color zone #1 near #2 distance 15
> color (#!2 & sel) #ffd778ff
> color (#!2 & sel) #ffd87aff
> color (#!2 & sel) #ffdb82ff
> color (#!2 & sel) #ffdc89ff
> color (#!2 & sel) #ffe296ff
> color (#!2 & sel) #ffe396ff
> color (#!2 & sel) #ffea91ff
> color (#!2 & sel) #ffe482ff
> color (#!2 & sel) #ffe077ff
> color (#!2 & sel) #ffe370ff
> color (#!2 & sel) #ffea6cff
> color (#!2 & sel) #fff26aff
> color (#!2 & sel) #fff36aff
> color (#!2 & sel) #fff36dff
> color (#!2 & sel) #fff475ff
> color zone #1 near #2 distance 15
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> select #2/O
347 atoms, 356 bonds, 40 residues, 1 model selected
> color sel #011993ff
> color zone #1 near #2 distance 15
> color sel #9437ffff
> color zone #1 near #2 distance 15
> color sel #76d6ffff
> color zone #1 near #2 distance 15
> color sel #79b8ffff
> color zone #1 near #2 distance 15
> color sel #00fdffff
> color sel #73fdffff
> color zone #1 near #2 distance 15
> color sel #ffd479ff
> color zone #1 near #2 distance 15
> color sel #011993ff
> color sel #005493ff
> color zone #1 near #2 distance 15
> select clear
> select #2/Z
467 atoms, 472 bonds, 1 pseudobond, 72 residues, 2 models selected
> color (#!2 & sel) #ff2600ff
> color (#!2 & sel) #ff7e79ff
> select clear
> select #2/M
3430 atoms, 3507 bonds, 1 pseudobond, 429 residues, 2 models selected
> select #2/L
2862 atoms, 2925 bonds, 1 pseudobond, 364 residues, 2 models selected
> select #2/L
2862 atoms, 2925 bonds, 1 pseudobond, 364 residues, 2 models selected
> select #2/K
5614 atoms, 5735 bonds, 1 pseudobond, 692 residues, 2 models selected
> ui tool show "Color Actions"
> color sel cornflower blue
> color zone #1 near #2 distance 15
> color sel royal blue
> color zone #1 near #2 distance 15
> select #2/M
3430 atoms, 3507 bonds, 1 pseudobond, 429 residues, 2 models selected
> ui tool show "Color Actions"
> color sel light pink
> color zone #1 near #2 distance 15
> color sel plum
> color zone #1 near #2 distance 15
> color sel pink
> color zone #1 near #2 distance 15
> color sel light pink
> color zone #1 near #2 distance 15
> hide #!1 models
> cartoon style (#!2 & sel) modeHelix tube sides 20
> cartoon style modeHelix tube radius 1.5
> select clear
> show #!1 models
> select #2/L
2862 atoms, 2925 bonds, 1 pseudobond, 364 residues, 2 models selected
> select #2/K
5614 atoms, 5735 bonds, 1 pseudobond, 692 residues, 2 models selected
> ui tool show "Color Actions"
> color sel cornflower blue
> color sel blue
> color zone #1 near #2 distance 15
> color sel medium blue
> color zone #1 near #2 distance 15
> select #2/M
3430 atoms, 3507 bonds, 1 pseudobond, 429 residues, 2 models selected
> ui tool show "Color Actions"
> color sel deep sky blue
> color zone #1 near #2 distance 15
> select clear
> hide #!1 models
> show #!1 models
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/WT-0N80Xe-ADPBeF/041924-global-resampleonapo.mrc"
Opened 041924-global-resampleonapo.mrc as #4, grid size 480,480,480, pixel
0.835, shown at level 0.105, step 2, values float32
> volume #4 step 1
> volume #4 level 0.1559
> volume #4 level 0.2387
> volume #4 level 0.3295
> volume #4 level 0.2569
> volume #4 level 0.2205
> color zone #4 near #2 distance 5.01
> hide #!2 models
> lighting soft
> lighting simple
> lighting soft
> volume splitbyzone #4
Opened 041924-global-resampleonapo.mrc 0 as #5.1, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 1 as #5.2, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 2 as #5.3, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 3 as #5.4, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 4 as #5.5, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 5 as #5.6, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 6 as #5.7, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 7 as #5.8, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 8 as #5.9, grid size 480,480,480, pixel
0.835, shown at level 0.221, step 1, values float32
Opened 041924-global-resampleonapo.mrc 9 as #5.10, grid size 480,480,480,
pixel 0.835, shown at level 0.221, step 1, values float32
> hide #!5 models
> show #!5 models
> hide #!5.2 models
> show #!5.2 models
> hide #!5.3 models
> hide #5.2.1 models
> show #5.2.1 models
> volume #5.2 level 0.2383
> volume #5.8 level 0.2205
> volume #5.9 level 0.2241
> volume #5.10 level 0.164
> volume #5.10 level 0.174
> surface dust #1 size 8.35
> surface dust #5.1 size 8.35
> surface dust #5.2 size 8.35
> surface dust #5.4 size 8.35
> surface dust #5.5 size 8.35
> surface dust #5.6 size 8.35
> surface dust #5.7 size 8.35
> surface dust #5.8 size 8.35
> surface dust #5.9 size 8.35
> surface dust #5.10 size 8.35
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/WT-0N80Xe-ADPBeF/041924-nuc-resampleonapo.mrc"
Opened 041924-nuc-resampleonapo.mrc as #6, grid size 480,480,480, pixel 0.835,
shown at level 0.188, step 2, values float32
> color zone #6 near #2 distance 5.01
> surface dust #1 size 8.35
> surface dust #5.1 size 8.35
> surface dust #5.2 size 8.35
> surface dust #5.4 size 8.35
> surface dust #5.5 size 8.35
> surface dust #5.6 size 8.35
> surface dust #5.7 size 8.35
> surface dust #5.8 size 8.35
> surface dust #5.9 size 8.35
> surface dust #5.10 size 8.35
> surface dust #6 size 8.35
> volume #6 step 1
> volume #6 level 0.7474
> volume #6 level 0.9057
> color zone #6 near #2 distance 5.01
[Repeated 1 time(s)]
> volume #6 level 1.127
> volume #6 level 1.233
> color zone #6 near #2 distance 5.11
> color zone #6 near #2 distance 5.21
> color zone #6 near #2 distance 5.31
> color zone #6 near #2 distance 5.41
> color zone #6 near #2 distance 5.51
> color zone #6 near #2 distance 5.61
> color zone #6 near #2 distance 5.71
> color zone #6 near #2 distance 5.81
> color zone #6 near #2 distance 5.91
> color zone #6 near #2 distance 6.01
> color zone #6 near #2 distance 6.11
> color zone #6 near #2 distance 6.21
> volume #6 level 1.444
> volume #5.9 level 0.2348
> show #!3 models
> color zone #3 near #2 distance 5.01
> select clear
> save /Users/upneet/Desktop/test.png width 3600 height 2671 supersample 3
> transparentBackground true
> close #4
> rename #5 "041924-global-resampleonapo_xl080.mrc split"
> rename #6 041924-nuc-resampleonapo_xl080.mrc
> rename #1 121124-a8-split_xl080.mrc
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/INO-40Xenuc-ADPBe/121124-a8-split.mrc"
Opened 121124-a8-split.mrc as #4, grid size 448,448,448, pixel 0.831, shown at
level 0.0002, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/INO-40Xenuc-ADPBe/onlyies2-lowres.mrc"
Opened onlyies2-lowres.mrc as #7, grid size 448,448,448, pixel 0.831, shown at
level 2.07e-05, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/INO-40Xenuc-ADPBe/onlynuc.mrc"
Opened onlynuc.mrc as #8, grid size 448,448,448, pixel 0.831, shown at level
9.79e-05, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/INO-40Xenuc-ADPBe/inocore.mrc"
Opened inocore.mrc as #9, grid size 448,448,448, pixel 0.831, shown at level
3.68e-05, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/INO-40Xenuc-ADPBe/nuc-resample.mrc"
Opened nuc-resample.mrc as #10, grid size 448,448,448, pixel 0.831, shown at
level 0.326, step 2, values float32
> surface dust #1 size 8.35
> surface dust #3 size 8.35
> surface dust #5.1 size 8.35
> surface dust #5.2 size 8.35
> surface dust #5.4 size 8.35
> surface dust #5.5 size 8.35
> surface dust #5.6 size 8.35
> surface dust #5.7 size 8.35
> surface dust #5.8 size 8.35
> surface dust #5.9 size 8.35
> surface dust #5.10 size 8.35
> surface dust #6 size 8.35
> surface dust #4 size 8.31
> surface dust #7 size 8.31
> surface dust #8 size 8.31
> surface dust #9 size 8.31
> surface dust #10 size 8.31
> hide #!7 models
> hide #!8 models
> hide #!9 models
> hide #!10 models
> rename #7 onlyies2-lowres-Xl040.mrc
> rename #8 onlynuc_Xl040.mrc
> rename #9 inocore_Xl040.mrc
> rename #10 nuc-resample_Xl040.mrc
> surface dust #1 size 8.35
> surface dust #3 size 8.35
> surface dust #5.1 size 8.35
> surface dust #5.2 size 8.35
> surface dust #5.4 size 8.35
> surface dust #5.5 size 8.35
> surface dust #5.6 size 8.35
> surface dust #5.7 size 8.35
> surface dust #5.8 size 8.35
> surface dust #5.9 size 8.35
> surface dust #5.10 size 8.35
> surface dust #6 size 8.35
> surface dust #4 size 8.31
> surface dust #10 size 8.31
> volume #7 step 1
> volume #8 step 1
> volume #9 step 1
> volume #10 step 1
> volume #7 level 0.00766
> volume #7 level 0.04253
> volume #8 level 0.1849
> volume #9 level 0.1834
> hide #!1 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!6 models
> show #!4 models
> hide #!4 models
> volume #10 level 0.6999
> volume #8 level 0.4115
> volume #7 level 0.05194
> volume #9 level 0.2181
> surface dust #7 size 8.31
> surface dust #8 size 8.31
> surface dust #9 size 8.31
> show #!4 models
> volume #4 step 1
> volume #4 level 0.002465
> lighting simple
> lighting soft
> volume #4 level 0.0026
> close #10
> rename #4 121124-a8-split_Xl040.mrc
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/Final-withADPBeF/042624-x40-wt-adpbef-withadpbef-final.pdb"
Chain information for 042624-x40-wt-adpbef-withadpbef-final.pdb #10
---
Chain | Description
A | No description available
B | No description available
C G | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
L | No description available
M | No description available
N | No description available
O | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
> hide #!10 cartoons
> hide #!10 atoms
> show #!10 cartoons
> hide #!7 models
> hide #!8 models
> hide #!9 models
> hide #!10 models
> hide #!4 models
> show #!10 models
> color #10/Q firebrick
Drag select of 808 residues
> color #10/R,S medium seagreen
> color #10/T-Y,A-H medium seagreen
> color #10/T-Y,A-H light gray
> select clear
> color #10/T-Y,I,J light slate gray
> color #10/I,J light slate gray
> nucleotides #!10 ladder
> show #!10 atoms
> undo
> select #10/I,J
6601 atoms, 7404 bonds, 322 residues, 1 model selected
> show sel atoms
> select clear
> select #10/K
32 atoms, 32 bonds, 2 pseudobonds, 3 residues, 2 models selected
> color #10/N medium blue
[Repeated 1 time(s)]
> select #10/L
2824 atoms, 2886 bonds, 1 pseudobond, 361 residues, 2 models selected
> ui tool show "Color Actions"
> color sel sandy brown
> color sel goldenrod
[Repeated 1 time(s)]
> show #!2 models
> cartoon style (#!10 & sel) modeHelix tube sides 20
> select up
55996 atoms, 57633 bonds, 12 pseudobonds, 6600 residues, 2 models selected
> select up
55996 atoms, 57633 bonds, 14 pseudobonds, 6600 residues, 3 models selected
> select up
55996 atoms, 57633 bonds, 14 pseudobonds, 6600 residues, 3 models selected
> select up
114335 atoms, 117752 bonds, 14 pseudobonds, 13459 residues, 19 models selected
> select down
55996 atoms, 57633 bonds, 14 pseudobonds, 6600 residues, 3 models selected
> select down
14 pseudobonds, 2 models selected
> cartoon style modeHelix tube radius 1.5
> select #10/Z
467 atoms, 472 bonds, 1 pseudobond, 72 residues, 2 models selected
> color sel salmon
[Repeated 1 time(s)]
> color sel dark salmon
> color sel salmon
> select #10/L
2824 atoms, 2886 bonds, 1 pseudobond, 361 residues, 2 models selected
> color (#!10 & sel) #ffd479ff
> color (#!10 & sel) #feff80ff
[Repeated 1 time(s)]
> select clear
> select #10/M
3422 atoms, 3498 bonds, 1 pseudobond, 431 residues, 2 models selected
> color sel deep sky blue
> select #10/O\
Nothing selected
> select #10/O
287 atoms, 296 bonds, 34 residues, 1 model selected
> color sel royal blue
> color sel #2163a6ff
[Repeated 1 time(s)]
> select clear
> hide #!2 models
> show #!9 models
> show #!8 models
> show #!4 models
> show #!7 models
> ui tool show "Color Zone"
> color zone #4 near #10 distance 4.99
> color zone #4 near #10 distance 1
> color zone #4 near #10 distance 10
> color zone #7 near #10 distance 4.99
> color zone #8 near #10 distance 4.99
> color zone #9 near #10 distance 4.99
> hide #!4 models
> show #!4 models
> hide #!10 models
> ui tool show "Side View"
> show #!2 models
> hide #!2 models
> show #!1 models
> hide #!1 models
> show #!6 models
> hide #!6 models
> show #!5 models
> hide #!5 models
> show #!1 models
> hide #!7 models
> hide #!8 models
> hide #!9 models
> hide #!4 models
> show #!3 models
> show #!4 models
> hide #!4 models
> show #!5 models
> show #!6 models
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2/xl_080_map.png" width 3600 height 2934 supersample 3
> transparentBackground true
> hide #!1 models
> hide #!3 models
> hide #!5 models
> hide #!6 models
> show #!8 models
> show #!9 models
> show #!7 models
> show #!4 models
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2/xl_040_map.png" width 3600 height 2934 supersample 3
> transparentBackground true
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Figure1.cxs" includeMaps
> true
> show #!10 models
> select #10/L
2824 atoms, 2886 bonds, 1 pseudobond, 361 residues, 2 models selected
> ui tool show "Color Actions"
> color sel gold
[Repeated 1 time(s)]
> color zone #9 near #10 distance 4.99
> color zone #4 near #10 distance 10
> select clear
> hide #!10 models
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Xl_0N40_map.png" width 3600
> height 2700 supersample 3 transparentBackground true
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Xl_0N40_map.png" width 3600
> height 2700 supersample 4 transparentBackground true
> select clear
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Xl_0N40_map.png" width 3600
> height 2700 supersample 1 transparentBackground true
> graphics silhouettes true
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Xl_0N40_map.png" width 3600
> height 2700 supersample 3 transparentBackground true
> graphics silhouettes false
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Xl_0N40_map.png" width 3600
> height 2700 supersample 3 transparentBackground true
> hide #!4 models
> hide #!7 models
> hide #!8 models
> hide #!9 models
> show #!1 models
> show #!3 models
> show #!5 models
> show #!6 models
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Xl_0N80_map.png" width 3600
> height 2700 supersample 3 transparentBackground true
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Figure1.cxs" includeMaps
> true
——— End of log from Thu Dec 12 15:18:18 2024 ———
opened ChimeraX session
Cell requested for row 0 is out of bounds for table with 20 rows! Resizing
table model.
> hide #!1 models
> hide #!3 models
> hide #!5 models
> hide #!6 models
> show #!7 models
> show #!8 models
> show #!9 models
> show #!10 models
> show #!4 models
> surface dust #4 size 8.31
> surface dust #7 size 8.31
> surface dust #8 size 8.31
> surface dust #9 size 8.31
> volume #4 level 0.002924
> volume #4 level 0.002769
> volume #4 level 0.00284
> volume #4 level 0.002896
> volume #4 level 0.002685
> select #10/L
2824 atoms, 2886 bonds, 1 pseudobond, 361 residues, 2 models selected
> ui tool show "Color Actions"
> color sel khaki
> ui tool show "Color Zone"
> color zone #4 near #10 distance 10
> show #!1 models
> color (#!10 & sel) #ffff86ff
> select #10/L
2824 atoms, 2886 bonds, 1 pseudobond, 361 residues, 2 models selected
> color zone #4 near #10 distance 10
> select clear
> hide #!1 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!10 models
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Xl_0N40_map.png" width 3600
> height 3398 supersample 3 transparentBackground true
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 1/Version 2-resubmission/Chimera Session/Figure1.cxs" includeMaps
> true
——— End of log from Sat Dec 28 15:21:23 2024 ———
opened ChimeraX session
> show #!1 models
> show #!2 models
> show #!3 models
> show #!5 models
> hide #!5 models
> show #!6 models
> hide #!6 models
> hide #!1 models
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!7 models
> hide #!8 models
> hide #!9 models
> close #4,7-10
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/INO-80Yeastnuc-ADPBeF/20231226-wt-y80nuc-adpbef-inocore-
> nuc_real_space_refined_009-coot-1.pdb"
Chain information for 20231226-wt-y80nuc-adpbef-inocore-
nuc_real_space_refined_009-coot-1.pdb #4
---
Chain | Description
C | No description available
D | No description available
E h | No description available
F j | No description available
G | No description available
H | No description available
K | No description available
L | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/INO-80Yeastnuc-ADPBeF/1x448-global-cryosparc-refine-unsharp-
> align-2.91A.mrc"
Opened 1x448-global-cryosparc-refine-unsharp-align-2.91A.mrc as #7, grid size
448,448,448, pixel 0.835, shown at level 0.167, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/INO-80Yeastnuc-ADPBeF/filter.mrc"
Opened filter.mrc as #8, grid size 256,256,256, pixel 1.67, shown at level
0.0143, step 1, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/wtINO80-0N80-Yeast-Apo/121124-0n80-ye-wt-apo-final-coot-0-pymol.pdb"
Chain information for 121124-0n80-ye-wt-apo-final-coot-0-pymol.pdb #9
---
Chain | Description
A E | No description available
B F | No description available
C | No description available
D H | No description available
G | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
O | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/wtINO80-0N80-Yeast-Apo/121124-a8-split.mrc"
Opened 121124-a8-split.mrc as #10, grid size 512,512,512, pixel 0.819, shown
at level 0.000444, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/wtINO80-0N80-Yeast-Apo/120524-inocore-nuc-3.16A.mrc"
Opened 120524-inocore-nuc-3.16A.mrc as #11, grid size 512,512,512, pixel
0.819, shown at level 0.0802, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/wtINO80-0N80-Xe-Apo/122324-x80-apo-a8-split-resample.mrc"
Opened 122324-x80-apo-a8-split-resample.mrc as #12, grid size 480,480,480,
pixel 0.835, shown at level 0.000239, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/wtINO80-0N80-Xe-Apo/122324-x80-apo-arp5-resample.mrc"
Opened 122324-x80-apo-arp5-resample.mrc as #13, grid size 480,480,480, pixel
0.835, shown at level 0.000123, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/wtINO80-0N80-Xe-Apo/122324-x80-apo-atpasehighres-resample.mrc"
Opened 122324-x80-apo-atpasehighres-resample.mrc as #14, grid size
480,480,480, pixel 0.835, shown at level 0.000139, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/wtINO80-0N80-Xe-Apo/122324-x80-apo-dna-resample.mrc"
Opened 122324-x80-apo-dna-resample.mrc as #15, grid size 480,480,480, pixel
0.835, shown at level 0.000354, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/wtINO80-0N80-Xe-Apo/122324-x80-apo-grappler-resample.mrc"
Opened 122324-x80-apo-grappler-resample.mrc as #16, grid size 480,480,480,
pixel 0.835, shown at level 3.54e-05, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/wtINO80-0N80-Xe-Apo/122324-x80-apo-histone-resample.mrc"
Opened 122324-x80-apo-histone-resample.mrc as #17, grid size 480,480,480,
pixel 0.835, shown at level 0.000232, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/wtINO80-0N80-Xe-Apo/122324-x80-apo-i2highres-resample.mrc"
Opened 122324-x80-apo-i2highres-resample.mrc as #18, grid size 480,480,480,
pixel 0.835, shown at level 3.03e-06, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/wtINO80-0N80-Xe-Apo/122324-x80-apo-resample.pdb"
Chain information for 122324-x80-apo-resample.pdb #19
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
O | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
a | No description available
b | No description available
f | No description available
h | No description available
k | No description available
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/wtINO80-0N80-Xe-Apo/122324-x80-apo-rvb-resample.mrc"
Opened 122324-x80-apo-rvb-resample.mrc as #20, grid size 480,480,480, pixel
0.835, shown at level 7.73e-05, step 2, values float32
> open "/Users/upneet/Library/CloudStorage/Box-Box/INO-yeastNCP/Map and
> Model/wtINO80-0N80-Xe-Apo/122324-x80-ies2lowres-resample.mrc"
Opened 122324-x80-ies2lowres-resample.mrc as #21, grid size 480,480,480, pixel
0.835, shown at level 2.62e-07, step 2, values float32
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 2/Version 2- Resubmission/0_80_ApovsADPBeF_Maps.cxs" includeMaps
> true
> hide #!11 models
> hide #!12 models
> hide #!13 models
> hide #!14 models
> hide #!15 models
> hide #!16 models
> hide #!17 models
> hide #!18 models
> hide #!19 models
> hide #!20 models
> hide #!21 models
> hide #!4 models
> hide #!7 models
> hide #!8 models
> hide #!9 models
> show #!9 models
> show #!8 models
> hide #!8 models
> hide #!9 atoms
> show #!9 atoms
> hide #!9 atoms
> show #!9 cartoons
> show #!2 models
> ui tool show Matchmaker
> matchmaker #9/A to #2/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 121124-0n80-xe-wt-adpbef-final-coot-0-pymol-shortdna.pdb, chain A
(#2) with 121124-0n80-ye-wt-apo-final-coot-0-pymol.pdb, chain A (#9), sequence
alignment score = 421.7
RMSD between 90 pruned atom pairs is 0.778 angstroms; (across all 94 pairs:
1.004)
> ui tool show "Fit in Map"
> hide #!10 models
> hide #!2 models
> hide #!9 models
> show #!2 models
> show #!11 models
> hide #!11 models
> show #!11 models
> hide #!11 models
> show #!11 models
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> select add #11
3 models selected
> view matrix models
> #11,0.46801,-0.5411,-0.6987,391.67,0.76816,0.63998,0.018915,-119.95,0.43692,-0.54557,0.71516,64.823
> view matrix models
> #11,-0.46811,-0.17111,-0.86695,584.39,0.81301,0.30101,-0.4984,53.015,0.34624,-0.93814,-0.0017941,326.48
> ui mousemode right "translate selected models"
> view matrix models
> #11,-0.46811,-0.17111,-0.86695,548.45,0.81301,0.30101,-0.4984,96.499,0.34624,-0.93814,-0.0017941,342.22
> hide #!2 models
> show #!9 models
> view matrix models
> #11,-0.46811,-0.17111,-0.86695,569.09,0.81301,0.30101,-0.4984,71.249,0.34624,-0.93814,-0.0017941,328.15
> fitmap #2 inMap #11
Fit molecule 121124-0n80-xe-wt-adpbef-final-coot-0-pymol-shortdna.pdb (#2) to
map 120524-inocore-nuc-3.16A.mrc (#11) using 58339 atoms
average map value = 0.04758, steps = 196
shifted from previous position = 14.4
rotated from previous position = 7.46 degrees
atoms outside contour = 42985, contour level = 0.080218
Position of 121124-0n80-xe-wt-adpbef-final-coot-0-pymol-shortdna.pdb (#2)
relative to 120524-inocore-nuc-3.16A.mrc (#11) coordinates:
Matrix rotation and translation
-0.45865907 0.76124611 0.45840617 66.04130277
-0.26224952 0.37693123 -0.88834004 373.23224661
-0.84903300 -0.52766202 0.02675350 515.57895222
Axis 0.21227268 0.76947747 -0.60236595
Axis point 165.83506426 0.00000000 379.29198569
Rotation angle (degrees) 121.83582990
Shift along axis -9.35463366
> fitmap #9 inMap #11
Fit molecule 121124-0n80-ye-wt-apo-final-coot-0-pymol.pdb (#9) to map
120524-inocore-nuc-3.16A.mrc (#11) using 57717 atoms
average map value = 0.2017, steps = 1708
shifted from previous position = 35.3
rotated from previous position = 75 degrees
atoms outside contour = 17523, contour level = 0.080218
Position of 121124-0n80-ye-wt-apo-final-coot-0-pymol.pdb (#9) relative to
120524-inocore-nuc-3.16A.mrc (#11) coordinates:
Matrix rotation and translation
1.00000000 -0.00006074 0.00005427 0.01055650
0.00006074 1.00000000 0.00000568 -0.02064744
-0.00005427 -0.00000568 1.00000000 0.01686760
Axis -0.06958774 0.66463915 0.74391689
Axis point 319.03804700 171.59046789 0.00000000
Rotation angle (degrees) 0.00467819
Shift along axis -0.00190961
> ui tool show "Side View"
> show #!5 models
> select subtract #11
Nothing selected
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!7 models
> hide #!9 models
> hide #!11 models
> show #!2 models
> hide #!2 models
> show #!5 models
> hide #!5 models
> show #!6 models
> hide #!6 models
> show #!9 models
> hide #!9 models
> show #!10 models
> hide #!10 models
> show #!11 models
> hide #!11 models
> show #!11 models
> surface dust #7 size 8.35
> surface dust #11 size 8.19
> select add #11
2 models selected
> view matrix models
> #11,-0.46811,-0.17111,-0.86695,549.14,0.81301,0.30101,-0.4984,69.47,0.34624,-0.93814,-0.0017941,317.54
> ui mousemode right rotate
> ui mousemode right "rotate selected models"
> view matrix models
> #11,-0.8341,0.48974,-0.25383,367.01,0.26446,-0.048787,-0.96316,370.59,-0.48408,-0.8705,-0.088827,517.57
> ui mousemode right "translate selected models"
> view matrix models
> #11,-0.8341,0.48974,-0.25383,360.21,0.26446,-0.048787,-0.96316,375.41,-0.48408,-0.8705,-0.088827,530.18
> view matrix models
> #11,-0.8341,0.48974,-0.25383,358.84,0.26446,-0.048787,-0.96316,383.34,-0.48408,-0.8705,-0.088827,519.86
> ui mousemode right "rotate selected models"
> view matrix models
> #11,-0.82246,0.54164,-0.17371,327.61,0.20486,-0.0028233,-0.97879,392.41,-0.53064,-0.8406,-0.10864,529.86
> view matrix models
> #11,-0.69285,0.68006,0.23976,174.05,-0.18361,0.15515,-0.97068,451.29,-0.69732,-0.71655,0.01737,515.69
> ui mousemode right "translate selected models"
> view matrix models
> #11,-0.69285,0.68006,0.23976,166.8,-0.18361,0.15515,-0.97068,441.71,-0.69732,-0.71655,0.01737,521.17
> view matrix models
> #11,-0.69285,0.68006,0.23976,174.07,-0.18361,0.15515,-0.97068,439.89,-0.69732,-0.71655,0.01737,504.12
> view matrix models
> #11,-0.69285,0.68006,0.23976,169.03,-0.18361,0.15515,-0.97068,443.43,-0.69732,-0.71655,0.01737,503.91
> ui mousemode right "rotate selected models"
> view matrix models
> #11,-0.72409,0.58246,0.36937,163.26,-0.37781,0.11308,-0.91895,483.65,-0.57702,-0.80496,0.13818,463.57
> view matrix models
> #11,-0.90807,0.26406,0.32508,274.47,-0.3083,0.10391,-0.9456,475.62,-0.28348,-0.95889,-0.012948,459.88
> view matrix models
> #11,-0.93735,0.33746,0.086626,324.52,-0.03972,0.14351,-0.98885,416.66,-0.34613,-0.93034,-0.12112,494.85
> ui mousemode right "translate selected models"
> view matrix models
> #11,-0.93735,0.33746,0.086626,330.67,-0.03972,0.14351,-0.98885,410.13,-0.34613,-0.93034,-0.12112,506.84
> ui tool show "Fit in Map"
> fitmap #11 inMap #5.8
Fit map 120524-inocore-nuc-3.16A.mrc in map 041924-global-resampleonapo.mrc 7
using 167598 points
correlation = 0.2717, correlation about mean = 0.05944, overlap = 682.8
steps = 236, shift = 3.15, angle = 11.2 degrees
Position of 120524-inocore-nuc-3.16A.mrc (#11) relative to 041924-global-
resampleonapo.mrc 7 (#5.8) coordinates:
Matrix rotation and translation
-0.88632457 0.45950295 -0.05732199 331.62490500
0.11024555 0.08916261 -0.98989694 386.02823887
-0.44974958 -0.88368947 -0.12968517 520.47184865
Axis 0.19816062 0.73218669 -0.65164025
Axis point 162.64429754 0.00000000 401.27755246
Rotation angle (degrees) 164.45570404
Shift along axis 9.19933237
> show #!10 models
> hide #!10 models
> show #!9 models
> fitmap #9 inMap #11
Fit molecule 121124-0n80-ye-wt-apo-final-coot-0-pymol.pdb (#9) to map
120524-inocore-nuc-3.16A.mrc (#11) using 57717 atoms
average map value = 0.06358, steps = 524
shifted from previous position = 21.4
rotated from previous position = 23.6 degrees
atoms outside contour = 39139, contour level = 0.080218
Position of 121124-0n80-ye-wt-apo-final-coot-0-pymol.pdb (#9) relative to
120524-inocore-nuc-3.16A.mrc (#11) coordinates:
Matrix rotation and translation
0.60709616 0.65538577 0.44933700 -150.63587196
-0.57100015 0.75305562 -0.32690373 245.95812177
-0.55262381 -0.05810950 0.83140255 171.50849007
Axis 0.16733755 0.62376959 -0.76348520
Axis point 265.73463114 388.45394890 0.00000000
Rotation angle (degrees) 53.43194556
Shift along axis -2.73003438
> show #!10 models
> select subtract #11
Nothing selected
> select add #10
3 models selected
> view matrix models #10,1,0,0,-42.69,0,1,0,28.059,0,0,1,10.168
> ui mousemode right "rotate selected models"
> view matrix models
> #10,-0.62,0.55054,-0.55902,487.63,0.71305,0.69264,-0.10869,-115.76,0.32736,-0.466,-0.822,391.76
> ui mousemode right "translate selected models"
> view matrix models
> #10,-0.62,0.55054,-0.55902,412.65,0.71305,0.69264,-0.10869,-19.792,0.32736,-0.466,-0.822,461.07
> ui mousemode right "rotate selected models"
> view matrix models
> #10,-0.80313,0.46625,-0.37093,434.96,0.55878,0.80549,-0.19737,30.687,0.20676,-0.36578,-0.90744,502.6
> view matrix models
> #10,-0.73853,-0.32286,-0.59189,572.19,0.51443,0.2976,-0.80423,250.23,0.43581,-0.89844,-0.053698,312
> ui mousemode right "translate selected models"
> view matrix models
> #10,-0.73853,-0.32286,-0.59189,575.43,0.51443,0.2976,-0.80423,233.34,0.43581,-0.89844,-0.053698,323.6
> view matrix models
> #10,-0.73853,-0.32286,-0.59189,576.08,0.51443,0.2976,-0.80423,235.18,0.43581,-0.89844,-0.053698,321.07
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!10 models
> hide #!9 models
> show #!10 models
> view matrix models
> #10,-0.73853,-0.32286,-0.59189,525.98,0.51443,0.2976,-0.80423,242.04,0.43581,-0.89844,-0.053698,302.07
> ui mousemode right "rotate selected models"
> view matrix models
> #10,-0.96781,-0.019089,0.25096,360.53,-0.18592,0.72632,-0.66174,358.14,-0.16964,-0.6871,-0.70648,600.72
> ui mousemode right "translate selected models"
> view matrix models
> #10,-0.96781,-0.019089,0.25096,334.89,-0.18592,0.72632,-0.66174,295.54,-0.16964,-0.6871,-0.70648,587.83
> ui mousemode right "rotate selected models"
> view matrix models
> #10,-0.99457,0.10342,-0.011745,386.22,0.021508,0.093791,-0.99536,395.41,-0.10184,-0.99021,-0.095506,469.24
> view matrix models
> #10,-0.99331,0.099471,-0.058607,397.07,0.057616,-0.012807,-0.99826,399.75,-0.10005,-0.99496,0.0069906,445.98
> ui mousemode right "translate selected models"
> view matrix models
> #10,-0.99331,0.099471,-0.058607,405.04,0.057616,-0.012807,-0.99826,411.07,-0.10005,-0.99496,0.0069906,440.48
> fitmap #10 inMap #1
Fit map 121124-a8-split.mrc in map 121124-a8-split_xl080.mrc using 167748
points
correlation = 0.9841, correlation about mean = 0.987, overlap = 2.479
steps = 264, shift = 35.9, angle = 17.3 degrees
Position of 121124-a8-split.mrc (#10) relative to 121124-a8-split_xl080.mrc
(#1) coordinates:
Matrix rotation and translation
-0.93714444 0.33750899 0.08858891 329.85593650
-0.05354817 0.11177048 -0.99229026 416.63699329
-0.34480851 -0.93466307 -0.08667210 498.17344367
Axis 0.09824214 0.73885064 -0.66666949
Axis point 188.32785546 0.00000000 403.66415364
Rotation angle (degrees) 162.94487597
Shift along axis 8.12122851
> show #!9 models
> rename #7 y0_80_ADPBeF_Core.mrc
> rename #8 y0_80_ADPBeF_Core-filter.mrc
> select add #9
57717 atoms, 59577 bonds, 15 pseudobonds, 6675 residues, 4 models selected
> select add #10
57717 atoms, 59577 bonds, 15 pseudobonds, 6675 residues, 5 models selected
> view matrix models
> #9,-0.76878,-0.23152,-0.59613,525.04,0.56306,0.19692,-0.80261,228,0.30321,-0.95269,-0.021028,338.17,#10,-0.93714,0.33751,0.088589,286.57,-0.053548,0.11177,-0.99229,423.06,-0.34481,-0.93466,-0.086672,487.71
> undo
> select subtract #10
57717 atoms, 59577 bonds, 15 pseudobonds, 6675 residues, 2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #9,-0.94202,0.26393,0.20722,343.39,-0.02008,0.57211,-0.81993,335.43,-0.33496,-0.77656,-0.53363,631.23
> ui mousemode right "translate selected models"
> view matrix models
> #9,-0.94202,0.26393,0.20722,313.8,-0.02008,0.57211,-0.81993,324.18,-0.33496,-0.77656,-0.53363,633.54
> show #!2 models
> fitmap #9 inMap #11
Fit molecule 121124-0n80-ye-wt-apo-final-coot-0-pymol.pdb (#9) to map
120524-inocore-nuc-3.16A.mrc (#11) using 57717 atoms
average map value = 0.2017, steps = 772
shifted from previous position = 72
rotated from previous position = 31.2 degrees
atoms outside contour = 17524, contour level = 0.080218
Position of 121124-0n80-ye-wt-apo-final-coot-0-pymol.pdb (#9) relative to
120524-inocore-nuc-3.16A.mrc (#11) coordinates:
Matrix rotation and translation
1.00000000 -0.00006501 0.00004475 0.00518918
0.00006501 1.00000000 0.00002173 -0.01831902
-0.00004475 -0.00002172 1.00000000 0.01687531
Axis -0.26537272 0.54669131 0.79416997
Axis point 298.68209806 88.00700545 0.00000000
Rotation angle (degrees) 0.00469039
Shift along axis 0.00200995
> hide #!1 models
> hide #!2 models
> hide #!7 models
> fitmap #9 inMap #10
Fit molecule 121124-0n80-ye-wt-apo-final-coot-0-pymol.pdb (#9) to map
121124-a8-split.mrc (#10) using 57717 atoms
average map value = 0.001464, steps = 376
shifted from previous position = 6.79
rotated from previous position = 11.8 degrees
atoms outside contour = 40556, contour level = 0.00044382
Position of 121124-0n80-ye-wt-apo-final-coot-0-pymol.pdb (#9) relative to
121124-a8-split.mrc (#10) coordinates:
Matrix rotation and translation
0.99996889 0.00779041 0.00123500 -0.92235426
-0.00779156 0.99996921 0.00092843 2.92489776
-0.00122773 -0.00093803 0.99999880 0.56357269
Axis -0.11749503 0.15503124 -0.98089767
Axis point 374.74059597 119.75654981 0.00000000
Rotation angle (degrees) 0.45508845
Shift along axis 0.00901544
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!10 models
> show #!10 models
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 2/Version 2- Resubmission/0_80_ApovsADPBeF_Maps.cxs" includeMaps
> true
> hide #!9 models
> select subtract #9
Nothing selected
> hide #!10 models
> hide #!11 models
> rename #1 x0_80_ADPBeF_A8-Split.mrc
> rename #2 x0_80_ADPBeF.pdb
> rename #3 x0_80_ADPBeF_Ies21.mrc
> rename #3 x0_80_ADPBeF_Ies2.mrc
> rename #4 y0_80_ADPBeF
> show #!4 models
> hide #!4 models
> show #!5 models
> hide #!5 models
> rename #5 "x0_80_ADPBeF_core.mrc split"
> rename #6 x0_80_ADPBeF_nuc.mrc
> rename #9 y0_80_Apo.pdb
> show #!10 models
> hide #!10 models
> rename #10 x0_80_Apo_A8-split.mrc
> rename #11 x0_80_Apo_core_nuc.mrc
> rename #10 y0_80_Apo_A8-split.mrc
> rename #11 y0_80_Apo_core_nuc.mrc
> show #!4 models
> show #!8 models
> show #!7 models
> hide #!7 models
> rename #4 y0_80_ADPBeF.pdb
> hide #!1 models
> hide #!4 models
> hide #!8 models
> ui favorite true "Model Panel"
> log metadata #4
No models had metadata
> log chains #4
Chain information for y0_80_ADPBeF.pdb #4
---
Chain | Description
C | No description available
D | No description available
E h | No description available
F j | No description available
G | No description available
H | No description available
K | No description available
L | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
> hide #!5.2,4-10 target m
> show #!1 models
> show #!2 models
> show #!3 models
> show #!5 models
> show #!6 models
> hide #!5 models
> hide #!3 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> hide #!2 models
> hide #!6 models
> show #!7 models
> show #!4 models
> show #!8 models
> hide #!4 atoms
> show #!4 cartoons
> select #4/A-H,T-Y
24941 atoms, 25248 bonds, 3218 residues, 1 model selected
> color sel light gray
> select #4/Q
5289 atoms, 5407 bonds, 3 pseudobonds, 660 residues, 2 models selected
> ui tool show "Color Actions"
> color sel fire brick
> select #4/R,S
4562 atoms, 4675 bonds, 2 pseudobonds, 567 residues, 2 models selected
> color sel sea green
> select #4/Z
248 atoms, 254 bonds, 28 residues, 1 model selected
> color sel indian red
> hide #!7 models
> hide #!8 models
> select #4/I,J
Nothing selected
> ui tool show "Color Actions"
> color light slate gray
> nucleotides #!4 ladder
> show #!4 atoms
> undo
[Repeated 3 time(s)]
> select #4/I,J
Nothing selected
> ui mousemode right select
Drag select of 2 residues
> select up
2969 atoms, 3334 bonds, 144 residues, 1 model selected
> select up
42356 atoms, 43634 bonds, 4935 residues, 1 model selected
> select down
2969 atoms, 3334 bonds, 144 residues, 1 model selected
> select #4/K,L
5904 atoms, 6622 bonds, 288 residues, 1 model selected
> color sel light slate gray
> nucleotides sel ladder
> show sel atoms
Drag select of 5 residues
> select up
194 atoms, 197 bonds, 22 residues, 1 model selected
> select up
785 atoms, 794 bonds, 95 residues, 1 model selected
> color sel light gray
> select clear
> show #!7 models
> ui tool show "Color Zone"
> color zone #7 near #4 distance 5.01
> hide #!7 models
Drag select of 17 residues
> select up
733 atoms, 737 bonds, 91 residues, 1 model selected
> color sel light gray
> select clear
Drag select of 22 residues
Drag select of 21 residues
> select up
580 atoms, 586 bonds, 68 residues, 1 model selected
> select up
3578 atoms, 3635 bonds, 449 residues, 1 model selected
> select down
580 atoms, 586 bonds, 68 residues, 1 model selected
Drag select of 63 residues
> select up
1514 atoms, 1521 bonds, 196 residues, 1 model selected
> color sel light gray
Drag select of 82 residues
> select up
1870 atoms, 1889 bonds, 232 residues, 1 model selected
> select down
673 atoms, 82 residues, 1 model selected
> color sel light gray
Drag select of 291 residues
> color sel light gray
Drag select of 20 residues
> color sel light gray
> select clear
> show #!7 models
> color zone #7 near #4 distance 5.01
[Repeated 2 time(s)]
> color zone #7 near #4 distance 8
[Repeated 1 time(s)]
> show #!8 models
> hide #!8 models
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 2/Version 2- Resubmission/0_80_ApovsADPBeF_Maps.cxs" includeMaps
> true
> hide #!4 models
> hide #!7 models
> show #!9 models
> select #9/A-H,T-Y
26415 atoms, 26739 bonds, 2 pseudobonds, 3403 residues, 2 models selected
> color (#!9 & sel) light gray
> select #9/Q
6141 atoms, 6266 bonds, 8 pseudobonds, 758 residues, 2 models selected
> ui tool show "Color Actions"
> color sel fire brick
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 2/Version 2- Resubmission/0_80_ApovsADPBeF_Maps.cxs" includeMaps
> true
——— End of log from Sun Dec 29 17:47:13 2024 ———
opened ChimeraX session
> select #9/I,K
9286 atoms, 9879 bonds, 835 residues, 1 model selected
> select #9/I,J
8481 atoms, 9512 bonds, 414 residues, 1 model selected
> ui tool show "Color Actions"
> color sel light slate gray
> nucleotides sel atoms
> style nucleic & sel stick
Changed 8481 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 8481 atom styles
> nucleotides sel ladder
> show sel atoms
> select #9/K
5092 atoms, 5206 bonds, 628 residues, 1 model selected
> color sel medium blue
> select #9/L
2856 atoms, 2919 bonds, 1 pseudobond, 363 residues, 2 models selected
> color sel khaki
> select #9/M
3454 atoms, 3531 bonds, 1 pseudobond, 433 residues, 2 models selected
> color sel royal blue
> color sel deep sky blue
> select #9/O
287 atoms, 296 bonds, 34 residues, 1 model selected
> color sel dark blue
> select #9/Z
464 atoms, 469 bonds, 1 pseudobond, 72 residues, 2 models selected
> color sel indian red
> select clear
> show #!10 models
> show #!11 models
> volume #10 level 0.00122
> volume #10 step 1
> volume #10 level 0.0006063
> volume #11 level 0.08901
> volume #11 step 1
> volume #11 level 0.1187
> ui tool show "Fit in Map"
> fitmap #9 inMap #11
Fit molecule y0_80_Apo.pdb (#9) to map y0_80_Apo_core_nuc.mrc (#11) using
57717 atoms
average map value = 0.2017, steps = 312
shifted from previous position = 6.79
rotated from previous position = 11.8 degrees
atoms outside contour = 20896, contour level = 0.11874
Position of y0_80_Apo.pdb (#9) relative to y0_80_Apo_core_nuc.mrc (#11)
coordinates:
Matrix rotation and translation
1.00000000 -0.00003537 -0.00001420 0.01261198
0.00003537 1.00000000 0.00006454 -0.02167371
0.00001419 -0.00006454 1.00000000 0.01098547
Axis -0.86107623 -0.18938758 0.47188990
Axis point 0.00000000 181.69642546 340.45423658
Rotation angle (degrees) 0.00429427
Shift along axis -0.00157121
> fitmap #9 inMap #10
Fit molecule y0_80_Apo.pdb (#9) to map y0_80_Apo_A8-split.mrc (#10) using
57717 atoms
average map value = 0.001464, steps = 340
shifted from previous position = 6.79
rotated from previous position = 11.8 degrees
atoms outside contour = 40619, contour level = 0.00060625
Position of y0_80_Apo.pdb (#9) relative to y0_80_Apo_A8-split.mrc (#10)
coordinates:
Matrix rotation and translation
0.99996906 0.00776652 0.00124346 -0.90713737
-0.00776759 0.99996946 0.00085491 2.93731787
-0.00123678 -0.00086454 0.99999886 0.55705285
Axis -0.10865733 0.15673404 -0.98164557
Axis point 377.44174395 118.13477585 0.00000000
Rotation angle (degrees) 0.45334497
Shift along axis 0.01211637
> fitmap #9 inMap #11
Fit molecule y0_80_Apo.pdb (#9) to map y0_80_Apo_core_nuc.mrc (#11) using
57717 atoms
average map value = 0.2017, steps = 332
shifted from previous position = 6.78
rotated from previous position = 11.8 degrees
atoms outside contour = 20891, contour level = 0.11874
Position of y0_80_Apo.pdb (#9) relative to y0_80_Apo_core_nuc.mrc (#11)
coordinates:
Matrix rotation and translation
1.00000000 -0.00003686 0.00002583 0.00303389
0.00003686 1.00000000 0.00002713 -0.01803754
-0.00002583 -0.00002713 1.00000000 0.01936458
Axis -0.51626765 0.49144166 0.70139348
Axis point 531.38843357 126.43530707 0.00000000
Rotation angle (degrees) 0.00301099
Shift along axis 0.00315149
> select add #10
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #10,-0.90529,0.42058,0.059653,315.92,-0.07551,-0.021135,-0.99692,442,-0.41803,-0.90701,0.050891,484.68
> view matrix models
> #10,-0.92895,0.36988,-0.015398,346.82,-0.038145,-0.137,-0.98984,444.9,-0.36823,-0.91892,0.14138,450.95
> view matrix models
> #10,-0.90265,0.42501,0.067688,312.71,-0.067158,0.01625,-0.99761,434.68,-0.4251,-0.90504,0.013875,494.95
> ui mousemode right "translate selected models"
> view matrix models
> #10,-0.90265,0.42501,0.067688,326.32,-0.067158,0.01625,-0.99761,446.02,-0.4251,-0.90504,0.013875,489.37
> view matrix models
> #10,-0.90265,0.42501,0.067688,307.93,-0.067158,0.01625,-0.99761,452.76,-0.4251,-0.90504,0.013875,484.21
> select clear
> select add #10
2 models selected
> select subtract #10
Nothing selected
> ui tool show "Color Zone"
> color zone #10 near #9 distance 4.91
> color zone #10 near #9 distance 1
> color zone #10 near #9 distance 15
> color zone #10 near #9 distance 2
> color zone #10 near #9 distance 20
> color zone #10 near #9 distance 3
> color zone #10 near #9 distance 30
> color zone #11 near #9 distance 4.91
> color zone #11 near #9 distance 7
> color zone #11 near #9 distance 9
> surface dust #10 size 8.19
> surface dust #11 size 8.19
> select #9/R,S
4527 atoms, 4639 bonds, 2 pseudobonds, 570 residues, 2 models selected
> color sel medium sea green
> color zone #11 near #9 distance 9
[Repeated 1 time(s)]
> volume #11 level 0.1329
> volume #10 level 0.000744
> volume #10 level 0.0008301
> volume #10 level 0.000899
> volume #11 level 0.1471
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 2/Version 2- Resubmission/0_80_ApovsADPBeF_Maps.cxs" includeMaps
> true
> hide #!9 models
> hide #!10 models
> hide #!11 models
> select add #19
62823 atoms, 64722 bonds, 17 pseudobonds, 7408 residues, 4 models selected
> select subtract #19
4527 atoms, 4639 bonds, 2 pseudobonds, 570 residues, 2 models selected
> show #!19 models
> show #!18 models
> hide #!18 models
> hide #!19 cartoons
> hide #!19 atoms
> show #!19 cartoons
> select #19/A-H,T-Y
32178 atoms, 32645 bonds, 6 pseudobonds, 4174 residues, 2 models selected
> select #19/A-H,T-Y
32178 atoms, 32645 bonds, 6 pseudobonds, 4174 residues, 2 models selected
> select
216708 atoms, 223413 bonds, 55 pseudobonds, 25307 residues, 61 models selected
> color sel light gray
> select clear
> ui mousemode right select
Drag select of 6 residues
> select up
209 atoms, 208 bonds, 42 residues, 1 model selected
> select up
219 atoms, 218 bonds, 44 residues, 1 model selected
> select up
58296 atoms, 60083 bonds, 6838 residues, 1 model selected
> select up
216708 atoms, 223413 bonds, 25307 residues, 37 models selected
> select down
58296 atoms, 60083 bonds, 6838 residues, 1 model selected
> select down
219 atoms, 218 bonds, 44 residues, 1 model selected
> select #19/F
219 atoms, 218 bonds, 44 residues, 1 model selected
> color sel indian red
Drag select of 5 residues
> select up
412 atoms, 416 bonds, 52 residues, 1 model selected
> select up
957 atoms, 969 bonds, 118 residues, 1 model selected
> select up
58296 atoms, 60083 bonds, 6838 residues, 1 model selected
> select down
957 atoms, 969 bonds, 118 residues, 1 model selected
> color sel fire brick
Drag select of 9 residues
> select up
228 atoms, 231 bonds, 29 residues, 1 model selected
> select up
2056 atoms, 2112 bonds, 247 residues, 1 model selected
> select up
58296 atoms, 60083 bonds, 6838 residues, 1 model selected
> select down
2056 atoms, 2112 bonds, 247 residues, 1 model selected
> select #19/K
2056 atoms, 2112 bonds, 247 residues, 1 model selected
> color sel fire brick
> select #19/Q
3409 atoms, 3474 bonds, 5 pseudobonds, 421 residues, 2 models selected
> color sel fire brick
Drag select of 14 residues
> select up
235 atoms, 234 bonds, 47 residues, 1 model selected
> select up
404 atoms, 403 bonds, 81 residues, 1 model selected
> select up
412 atoms, 410 bonds, 82 residues, 1 model selected
> select up
651 atoms, 649 bonds, 130 residues, 1 model selected
> select up
771 atoms, 768 bonds, 154 residues, 1 model selected
> select up
58296 atoms, 60083 bonds, 6838 residues, 1 model selected
> select down
771 atoms, 768 bonds, 154 residues, 1 model selected
> color sel medium sea green
Drag select of 21 residues
> select up
643 atoms, 663 bonds, 79 residues, 1 model selected
> select up
2626 atoms, 2693 bonds, 327 residues, 1 model selected
> select up
3029 atoms, 3109 bonds, 376 residues, 1 model selected
> select up
4561 atoms, 4674 bonds, 570 residues, 1 model selected
> color sel medium sea green
Drag select of 25 residues
> select up
690 atoms, 696 bonds, 82 residues, 1 model selected
> select up
5060 atoms, 5173 bonds, 626 residues, 1 model selected
> color sel medium blue
Drag select of 7 residues
> select up
195 atoms, 201 bonds, 22 residues, 1 model selected
> select up
2570 atoms, 2628 bonds, 325 residues, 1 model selected
> color sel khaki
Drag select of 13 residues
> select up
381 atoms, 388 bonds, 47 residues, 1 model selected
> select up
2540 atoms, 2602 bonds, 318 residues, 1 model selected
> color sel deep sky blue
Drag select of 8 residues
> select up
235 atoms, 241 bonds, 27 residues, 1 model selected
> select up
1205 atoms, 1228 bonds, 149 residues, 1 model selected
> color sel dark blue
> undo
> select #19/C
347 atoms, 356 bonds, 40 residues, 1 model selected
> color sel dark blue
> select #19/B
3430 atoms, 3507 bonds, 1 pseudobond, 429 residues, 2 models selected
> color sel deep sky blue
Drag select of 6 residues
> select up
7828 atoms, 8781 bonds, 382 residues, 1 model selected
> color sel light slate gray
> nucleotides sel ladder
> show sel cartoons
> show sel atoms
> select clear
> show #!12 models
> show #!13 models
> show #!14 models
> show #!15 models
> show #!16 models
> show #!17 models
> show #!18 models
> show #!20 models
> show #!21 models
> volume #21 step 1
> volume #21 level 0.0003197
> volume #20 step 1
> volume #20 level 0.241
> volume #20 level 0.2214
> volume #18 step 1
> volume #18 level 0.1038
> volume #17 step 1
> volume #17 level 0.4374
> volume #17 level 1.484
> volume #17 level 1.289
> volume #16 step 1
> volume #16 level 0.06124
> volume #16 level 0.1099
> volume #15 step 1
> volume #15 level 0.6283
> volume #15 level 0.8467
> volume #14 step 1
> volume #14 level 0.02117
> volume #13 step 1
> volume #13 level 0.04944
> volume #13 level 0.08318
> volume #12 step 1
> volume #12 level 0.001063
> color zone #12 near #19 distance 5.01
> color zone #12 near #19 distance 5.1
> color zone #12 near #19 distance 40.94
> color zone #12 near #19 distance 2
> color zone #12 near #19 distance 25
> color zone #12 near #19 distance 3
> color zone #12 near #19 distance 30
> volume #12 level 0.001206
> volume #12 level 0.001414
> volume #12 level 0.001297
> volume #12 level 0.001219
> color zone #13 near #19 distance 5.01
> color zone #14 near #19 distance 5.01
> color zone #15 near #19 distance 5.01
> color zone #16 near #19 distance 5.01
> color zone #17 near #19 distance 5.01
> color zone #18 near #19 distance 5.01
> color zone #21 near #19 distance 5.01
> surface dust #12 size 8.35
> surface dust #13 size 8.35
> surface dust #14 size 8.35
> surface dust #15 size 8.35
> surface dust #16 size 8.35
> surface dust #17 size 8.35
> surface dust #18 size 8.35
> surface dust #20 size 8.35
> surface dust #21 size 8.35
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 2/Version 2- Resubmission/0_80_ApovsADPBeF_Maps.cxs" includeMaps
> true
> show #!1 models
> show #!2 models
> show #!3 models
> show #!4 models
> hide #!4 models
> show #!5 models
> show #!6 models
> color zone #1 near #19 distance 5.01
> color zone #1 near #19 distance 2
> color zone #1 near #19 distance 20
> hide #!12 models
> hide #!2 models
> volume #1 level 0.003197
> volume #1 level 0.002949
> volume #1 level 0.002501
> volume #1 level 0.002609
> hide #!21 models
> hide #!20 models
> hide #!19 models
> hide #!18 models
> hide #!17 models
> hide #!16 models
> hide #!15 models
> hide #!14 models
> hide #!13 models
> show #!2 models
> hide #!6 models
> hide #!5 models
> hide #!2 models
> hide #!1 models
> hide #!3 models
> show #!2 models
> select #2/Q
6141 atoms, 6266 bonds, 8 pseudobonds, 758 residues, 2 models selected
> color sel fire brick
> select #2/R,S
5315 atoms, 5425 bonds, 5 pseudobonds, 726 residues, 2 models selected
> color sel medium sea green
> select #2/z
467 atoms, 472 bonds, 1 pseudobond, 72 residues, 2 models selected
> color sel indian red
> select #2/K
5614 atoms, 5735 bonds, 1 pseudobond, 692 residues, 2 models selected
> color sel medium blue
> select #2/l
2862 atoms, 2925 bonds, 1 pseudobond, 364 residues, 2 models selected
> color sel deep sky blue
> color sel khaki
> select #2/m
3430 atoms, 3507 bonds, 1 pseudobond, 429 residues, 2 models selected
> color sel deep sky blue
[Repeated 1 time(s)]
> select #2/o
347 atoms, 356 bonds, 40 residues, 1 model selected
> color sel dark blue
> select #2/i,j
7787 atoms, 8735 bonds, 380 residues, 1 model selected
> color sel light slate gray
> select clear
> show #!1 models
> color zone #1 near #2 distance 20
> ui tool show "Fit in Map"
> fitmap #2 inMap #1
Fit molecule x0_80_ADPBeF.pdb (#2) to map x0_80_ADPBeF_A8-Split.mrc (#1) using
58339 atoms
average map value = 0.001452, steps = 1000
shifted from previous position = 15.1
rotated from previous position = 7.37 degrees
atoms outside contour = 42857, contour level = 0.0026092
Position of x0_80_ADPBeF.pdb (#2) relative to x0_80_ADPBeF_A8-Split.mrc (#1)
coordinates:
Matrix rotation and translation
0.99994014 0.00694600 -0.00845407 0.33822171
-0.00700867 0.99994801 -0.00740623 3.05230247
0.00840219 0.00746504 0.99993684 -1.18934593
Axis 0.56207240 -0.63709731 -0.52742927
Axis point 213.16300362 0.00000000 113.44077700
Rotation angle (degrees) 0.75798549
Shift along axis -1.12721276
> color zone #1 near #2 distance 20
> show #!3 models
> color zone #1 near #2 distance 20
> color zone #3 near #2 distance 5.01
> show #!4 models
> hide #!4 models
> show #!5 models
> select add #5
21 models selected
> select subtract #5
Nothing selected
> color zone #5.1 near #2 distance 5.01
[Repeated 1 time(s)]
> color zone #5.2 near #2 distance 5.01
> color zone #5.3 near #2 distance 5.01
> color zone #5.4 near #2 distance 5.01
> color zone #5.5 near #2 distance 5.01
> color zone #5.6 near #2 distance 5.01
> color zone #5.7 near #2 distance 5.01
> color zone #5.8 near #2 distance 5.01
> color zone #5.9 near #2 distance 5.01
> color zone #5.10 near #2 distance 5.01
> color zone #6 near #2 distance 5.01
> surface dust #1 size 8.35
> surface dust #3 size 8.35
> surface dust #5.1 size 8.35
> surface dust #5.2 size 8.35
> surface dust #5.3 size 8.35
> surface dust #5.4 size 8.35
> surface dust #5.5 size 8.35
> surface dust #5.6 size 8.35
> surface dust #5.7 size 8.35
> surface dust #5.8 size 8.35
> surface dust #5.9 size 8.35
> surface dust #5.10 size 8.35
> surface dust #6 size 8.35
> show #!12 models
> show #!13 models
> show #!14 models
> show #!15 models
> show #!16 models
> show #!18 models
> show #!17 models
> show #!19 models
> show #!20 models
> show #!21 models
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 2/Version 2- Resubmission/0_80_ApovsADPBeF_Maps.cxs" includeMaps
> true
——— End of log from Mon Dec 30 10:34:25 2024 ———
opened ChimeraX session
Cell requested for row 0 is out of bounds for table with 31 rows! Resizing
table model.
> hide #!1 models
> hide #!2 models
> hide #!3 models
> hide #!5 models
> hide #!6 models
> hide #!12 models
> hide #!13 models
> hide #!14 models
> hide #!15 models
> hide #!16 models
> hide #!17 models
> hide #!18 models
> hide #!19 models
> hide #!20 models
> hide #!21 models
> show #!4 models
> select #4/Q
5289 atoms, 5407 bonds, 3 pseudobonds, 660 residues, 2 models selected
> show #!9 models
> select #4,9/Q
11430 atoms, 11673 bonds, 11 pseudobonds, 1418 residues, 4 models selected
> ui tool show "Color Actions"
> color sel fire brick
> select #4,9/Z
712 atoms, 723 bonds, 1 pseudobond, 100 residues, 3 models selected
> color sel indian red
> select #4,9/R,S
9089 atoms, 9314 bonds, 4 pseudobonds, 1137 residues, 4 models selected
> color sel medium sea green
> select #4,9/I,J
8481 atoms, 9512 bonds, 414 residues, 1 model selected
> select #9/I,J
8481 atoms, 9512 bonds, 414 residues, 1 model selected
> color sel light slate gray
> ui mousemode right select
Drag select of 5 residues, 14 shapes
> select up
5904 atoms, 6622 bonds, 288 residues, 1 model selected
> color sel light slate gray
> select #9/K
5092 atoms, 5206 bonds, 628 residues, 1 model selected
> color sel medium blue
> select #9/L
2856 atoms, 2919 bonds, 1 pseudobond, 363 residues, 2 models selected
> color sel khaki
> select #9/M
3454 atoms, 3531 bonds, 1 pseudobond, 433 residues, 2 models selected
> color sel royal blue
> color sel deep sky blue
> select #9/O
287 atoms, 296 bonds, 34 residues, 1 model selected
> color sel dark blue
> select clear
> hide #!9 models
> show #!7 models
> ui tool show "Color Zone"
> color zone #7 near #4 distance 5.01
> color zone #7 near #4 distance 9
> color zone #7 near #4 distance 9.1
> color zone #7 near #4 distance 9.2
> color zone #7 near #4 distance 9.3
> color zone #7 near #4 distance 9.4
> color zone #7 near #4 distance 9.5
> color zone #7 near #4 distance 9.6
> color zone #7 near #4 distance 9.7
> color zone #7 near #4 distance 9.8
> color zone #7 near #4 distance 9.9
> color zone #7 near #4 distance 10
> color zone #7 near #4 distance 11
> color zone #7 near #4 distance 12
> color zone #7 near #4 distance 13
> color zone #7 near #4 distance 14
> color zone #7 near #4 distance 15
> color zone #7 near #4 distance 16
> color zone #7 near #4 distance 17
> color zone #7 near #4 distance 18
> color zone #7 near #4 distance 19
> color zone #7 near #4 distance 20
> color zone #7 near #4 distance 21
> color zone #7 near #4 distance 1
> color zone #7 near #4 distance 15
[Repeated 1 time(s)]
> volume #7 step 1
> volume #7 level 0.2222
> volume #7 level 0.2028
> volume #7 level 0.1861
> surface dust #7 size 8.35
> coulombic #!4
The following residues are missing heavy (non-hydrogen) atoms, which may
result in inaccurate electrostatics:
y0_80_ADPBeF.pdb #4/G ILE 63
y0_80_ADPBeF.pdb #4/G ILE 88
y0_80_ADPBeF.pdb #4/Q LYS 707
y0_80_ADPBeF.pdb #4/Q ARG 802
y0_80_ADPBeF.pdb #4/Q ASN 804
y0_80_ADPBeF.pdb #4/Q VAL 824
y0_80_ADPBeF.pdb #4/Q ARG 863
y0_80_ADPBeF.pdb #4/Q ARG 865
y0_80_ADPBeF.pdb #4/Q ASP 896
y0_80_ADPBeF.pdb #4/Q GLU 897
y0_80_ADPBeF.pdb #4/Q LYS 947
y0_80_ADPBeF.pdb #4/Q ARG 959
y0_80_ADPBeF.pdb #4/Q ARG 1293
y0_80_ADPBeF.pdb #4/Q LYS 1300
y0_80_ADPBeF.pdb #4/Q ASP 1305
y0_80_ADPBeF.pdb #4/Q ARG 1317
y0_80_ADPBeF.pdb #4/Q LYS 1326
y0_80_ADPBeF.pdb #4/Q MET 1327
y0_80_ADPBeF.pdb #4/Q GLN 1403
y0_80_ADPBeF.pdb #4/Q ARG 1407
y0_80_ADPBeF.pdb #4/Q LEU 1423
y0_80_ADPBeF.pdb #4/Q ILE 1428
y0_80_ADPBeF.pdb #4/Q ARG 1431
y0_80_ADPBeF.pdb #4/Q ARG 1433
y0_80_ADPBeF.pdb #4/Q ARG 1435
y0_80_ADPBeF.pdb #4/Q LYS 1437
y0_80_ADPBeF.pdb #4/Q LYS 1439
y0_80_ADPBeF.pdb #4/T LYS 161
y0_80_ADPBeF.pdb #4/T THR 162
y0_80_ADPBeF.pdb #4/T ILE 163
y0_80_ADPBeF.pdb #4/U GLU 137
y0_80_ADPBeF.pdb #4/U GLU 182
y0_80_ADPBeF.pdb #4/W GLU 137
y0_80_ADPBeF.pdb #4/Y GLU 137
Using Amber 20 recommended default charges and atom types for standard
residues
Hydrogen copy of y0_80_ADPBeF.pdb #/Q PRO 1289 H bonded to atom that should
not have hydrogens (copy of y0_80_ADPBeF.pdb #/Q PRO 1289 C)
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 2/Version 2- Resubmission/0_80_ApovsADPBeF_Maps.cxs" includeMaps
> true
Cell requested for row 3 is out of bounds for table with 22 rows! Resizing
table model.
> hide #!4 models
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 2/Version 2- Resubmission/Sc_0N80_ADP.png" width 3600 height 3121
> supersample 3 transparentBackground true
> hide #!7 models
> show #!8 models
> hide #!8 models
> show #!9 models
> show #!10 models
> show #!11 models
> show #!12 models
> show #!13 models
> hide #!12 models
> hide #!13 models
> ui tool show "Fit in Map"
> fitmap #9 inMap #10
Fit molecule y0_80_Apo.pdb (#9) to map y0_80_Apo_A8-split.mrc (#10) using
57717 atoms
average map value = 0.001464, steps = 336
shifted from previous position = 10.2
rotated from previous position = 11.2 degrees
atoms outside contour = 40732, contour level = 0.000899
Position of y0_80_Apo.pdb (#9) relative to y0_80_Apo_A8-split.mrc (#10)
coordinates:
Matrix rotation and translation
0.99996930 0.00773960 0.00121901 -0.89960346
-0.00774083 0.99996953 0.00100630 2.88667355
-0.00121118 -0.00101571 0.99999875 0.56591299
Axis -0.12797580 0.15381035 -0.97977782
Axis point 372.35967518 117.63351086 0.00000000
Rotation angle (degrees) 0.45263969
Shift along axis 0.00465875
> fitmap #9 inMap #7
Fit molecule y0_80_Apo.pdb (#9) to map y0_80_ADPBeF_Core.mrc (#7) using 57717
atoms
average map value = 0.2218, steps = 356
shifted from previous position = 14.9
rotated from previous position = 9.23 degrees
atoms outside contour = 28944, contour level = 0.18614
Position of y0_80_Apo.pdb (#9) relative to y0_80_ADPBeF_Core.mrc (#7)
coordinates:
Matrix rotation and translation
-0.94309943 0.33155029 0.02525599 343.62268043
0.01465608 0.11733048 -0.99298477 400.56032429
-0.33218769 -0.93611322 -0.11551354 502.14203310
Axis 0.11822041 0.74302773 -0.65873647
Axis point 181.59334510 0.00000000 400.47979006
Rotation angle (degrees) 166.08206693
Shift along axis 7.47137295
> select add #10
2 models selected
Drag select of 31 residues, 6 shapes, 10 y0_80_Apo_A8-split.mrc
> ui mousemode right "translate selected models"
> view matrix models
> #9,-0.9431,0.33155,0.025256,343.47,0.014656,0.11733,-0.99298,395.9,-0.33219,-0.93611,-0.11551,507.18,#10,-0.90265,0.42501,0.067688,307.78,-0.067158,0.01625,-0.99761,448.1,-0.4251,-0.90504,0.013875,489.25
> undo
> select add #9
57717 atoms, 59577 bonds, 15 pseudobonds, 6675 residues, 4 models selected
> select subtract #9
2 models selected
> view matrix models
> #10,-0.90265,0.42501,0.067688,305.68,-0.067158,0.01625,-0.99761,444.26,-0.4251,-0.90504,0.013875,492.99
> view matrix models
> #10,-0.90265,0.42501,0.067688,305.86,-0.067158,0.01625,-0.99761,442.74,-0.4251,-0.90504,0.013875,492.92
> select subtract #10
Nothing selected
> color zone #10 near #9 distance 4.91
> color zone #10 near #9 distance 1
> color zone #10 near #9 distance 15
> color zone #10 near #9 distance 3
> color zone #10 near #9 distance 30
> select add #9
57717 atoms, 59577 bonds, 15 pseudobonds, 6675 residues, 2 models selected
> select subtract #9
Nothing selected
> select add #10
2 models selected
> view matrix models
> #10,-0.90265,0.42501,0.067688,309.18,-0.067158,0.01625,-0.99761,438.01,-0.4251,-0.90504,0.013875,493.14
> color zone #10 near #9 distance 30
> volume #10 level 0.001061
> volume #10 level 0.001224
> volume #10 level 0.001477
> volume #10 level 0.001603
> surface dust #10 size 8.19
> color zone #11 near #9 distance 4.91
> color zone #11 near #9 distance 1
> color zone #11 near #9 distance 10
> select clear
> hide #!9 models
> volume #11 level 0.1719
> volume #11 level 0.1669
> volume #11 level 0.1644
> volume #11 level 0.157
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 2/Version 2- Resubmission/Sc_0N80_Apo.png" width 3600 height 3121
> supersample 3 transparentBackground true
> save "/Users/upneet/Desktop/Narlilkar Lab/Manuscript_INO80_AutoInib/Figures
> /Figure 2/Version 2- Resubmission/0_80_ApovsADPBeF_Maps.cxs" includeMaps
> true
——— End of log from Mon Dec 30 10:55:42 2024 ———
opened ChimeraX session
OpenGL version: 4.1 Metal - 88
OpenGL renderer: Apple M3 Max
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac15,9
Model Number: Z1CM000M6LL/A
Chip: Apple M3 Max
Total Number of Cores: 16 (12 performance and 4 efficiency)
Memory: 64 GB
System Firmware Version: 10151.101.3
OS Loader Version: 10151.101.3
Software:
System Software Overview:
System Version: macOS 14.4.1 (23E224)
Kernel Version: Darwin 23.4.0
Time since boot: 2 days, 23 hours, 34 minutes
Graphics/Displays:
Apple M3 Max:
Chipset Model: Apple M3 Max
Type: GPU
Bus: Built-In
Total Number of Cores: 40
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3456 x 2234 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Note:
See TracTickets
for help on using tickets.
