Changes between Initial Version and Version 1 of Ticket #16460


Ignore:
Timestamp:
Dec 13, 2024, 9:07:01 AM (11 months ago)
Author:
Eric Pettersen
Comment:

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #16460

    • Property Component Unassigned → Window Toolkit
    • Property Owner set to Tom Goddard
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → Crash on Mac waking from sleep

  • Ticket #16460 – Description

    initial v1  
    18371837opened ChimeraX session 
    18381838
    1839 > open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
    1840 > from_June2024/July_2024/Final-version_model/Final-ver_side-
    1841 > view4top-09042024.cxs
     1839[deleted to fit within ticket limits]
     1840
     1841> select add #2.84
     1842
     184370 models selected 
     1844
     1845> select add #2.82
     1846
     184771 models selected 
     1848
     1849> select add #2.129
     1850
     185172 models selected 
     1852
     1853> select add #2.118
     1854
     185573 models selected 
     1856
     1857> select add #2.143
     1858
     185974 models selected 
     1860
     1861> select add #2.142
     1862
     186375 models selected 
     1864
     1865> select add #2.141
     1866
     186776 models selected 
     1868
     1869> select add #2.144
     1870
     187177 models selected 
     1872
     1873> select add #2.146
     1874
     187578 models selected 
     1876
     1877> select add #2.32
     1878
     187979 models selected 
     1880
     1881> select add #2.122
     1882
     188380 models selected 
     1884
     1885> select add #2.137
     1886
     188781 models selected 
     1888
     1889> select add #2.136
     1890
     189182 models selected 
     1892
     1893> select add #2.132
     1894
     189583 models selected 
     1896
     1897> select add #2.128
     1898
     189984 models selected 
     1900
     1901> select add #2.139
     1902
     190385 models selected 
     1904
     1905> select add #2.123
     1906
     190786 models selected 
     1908
     1909> select add #2.133
     1910
     191187 models selected 
     1912
     1913> select add #2.125
     1914
     191588 models selected 
     1916
     1917> select add #2.138
     1918
     191989 models selected 
     1920
     1921> select add #2.134
     1922
     192390 models selected 
     1924
     1925> select add #2.140
     1926
     192791 models selected 
     1928Grouped 91 regions 
     1929Opened Hp-C1-4_imasked as #4, grid size 220,220,220, pixel 4.3, shown at step
     19301, values float32 
     1931Segmenting Hp-C1-4_imasked, density threshold 0.005152 
     1932Showing 55 region surfaces 
     1933953 watershed regions, grouped to 55 regions 
     1934Showing Hp-C1-4_imasked.seg - 55 regions, 55 surfaces 
     1935
     1936The cached device pixel ratio value was stale on window expose. Please file a
     1937QTBUG which explains how to reproduce. 
     1938
     1939> save /Users/shoichitachiyama/Desktop/Chimera-Dec11_2024/All_periplasm.mrc
     1940> models #4
     1941
     1942> select #2.16
     1943
     19441 model selected 
     1945
     1946> select add #2.2
     1947
     19482 models selected 
     1949
     1950> select add #2.7
     1951
     19523 models selected 
     1953
     1954> select add #2.10
     1955
     19564 models selected 
     1957
     1958> select add #2.13
     1959
     19605 models selected 
     1961
     1962> select add #2.8
     1963
     19646 models selected 
     1965
     1966> select add #2.14
     1967
     19687 models selected 
     1969
     1970> select add #2.6
     1971
     19728 models selected 
     1973
     1974> select add #2.9
     1975
     19769 models selected 
     1977
     1978> select add #2.18
     1979
     198010 models selected 
     1981
     1982> select add #2.1
     1983
     198411 models selected 
     1985
     1986> select add #2.17
     1987
     198812 models selected 
     1989
     1990> select add #2.4
     1991
     199213 models selected 
     1993
     1994> select add #2.3
     1995
     199614 models selected 
     1997
     1998> select add #2.15
     1999
     200015 models selected 
     2001
     2002> select add #2.11
     2003
     200416 models selected 
     2005
     2006> select add #2.12
     2007
     200817 models selected 
     2009
     2010> select add #2.5
     2011
     201218 models selected 
     2013Ungrouped to 44 regions 
     2014Ungrouped to 140 regions 
     2015
     2016> select clear
     2017
     2018> select #2.105
     2019
     20201 model selected 
     2021
     2022> select add #2.104
     2023
     20242 models selected 
     2025
     2026> select add #2.216
     2027
     20283 models selected 
     2029
     2030> select add #2.217
     2031
     20324 models selected 
     2033
     2034> select add #2.130
     2035
     20365 models selected 
     2037
     2038> select add #2.134
     2039
     20406 models selected 
     2041
     2042> select add #2.133
     2043
     20447 models selected 
     2045
     2046> select add #2.131
     2047
     20488 models selected 
     2049
     2050> select add #2.10
     2051
     20529 models selected 
     2053
     2054> select add #2.8
     2055
     205610 models selected 
     2057
     2058> select add #2.9
     2059
     206011 models selected 
     2061
     2062> select add #2.203
     2063
     206412 models selected 
     2065
     2066> select add #2.204
     2067
     206813 models selected 
     2069
     2070> select add #2.4
     2071
     207214 models selected 
     2073
     2074> select add #2.3
     2075
     207615 models selected 
     2077
     2078> select add #2.1
     2079
     208016 models selected 
     2081
     2082> select add #2.116
     2083
     208417 models selected 
     2085
     2086> select add #2.115
     2087
     208818 models selected 
     2089
     2090> select add #2.177
     2091
     209219 models selected 
     2093
     2094> select add #2.190
     2095
     209620 models selected 
     2097
     2098> select add #2.189
     2099
     210021 models selected 
     2101
     2102> select add #2.181
     2103
     210422 models selected 
     2105
     2106> select add #2.159
     2107
     210823 models selected 
     2109
     2110> select add #2.113
     2111
     211224 models selected 
     2113
     2114> select add #2.114
     2115
     211625 models selected 
     2117
     2118> select add #2.201
     2119
     212026 models selected 
     2121
     2122> select subtract #2.201
     2123
     212425 models selected 
     2125
     2126> select add #2.200
     2127
     212826 models selected 
     2129
     2130> select add #2.201
     2131
     213227 models selected 
     2133
     2134> select add #2.135
     2135
     213628 models selected 
     2137
     2138> select add #2.124
     2139
     214029 models selected 
     2141
     2142> select add #2.198
     2143
     214430 models selected 
     2145
     2146> select add #2.199
     2147
     214831 models selected 
     2149
     2150> select add #2.103
     2151
     215232 models selected 
     2153
     2154> select add #2.102
     2155
     215633 models selected 
     2157
     2158> select add #2.156
     2159
     216034 models selected 
     2161
     2162> select add #2.206
     2163
     216435 models selected 
     2165
     2166> hide #!4 models
     2167
     2168> select add #2.125
     2169
     217036 models selected 
     2171
     2172> select add #2.182
     2173
     217437 models selected 
     2175
     2176> select add #2.19
     2177
     217838 models selected 
     2179
     2180> select subtract #2.19
     2181
     218237 models selected 
     2183
     2184> select add #2.137
     2185
     218638 models selected 
     2187
     2188> select add #2.140
     2189
     219039 models selected 
     2191
     2192> select subtract #2.140
     2193
     219438 models selected 
     2195
     2196> select subtract #2.137
     2197
     219837 models selected 
     2199Grouped 37 regions 
     2200
     2201> select clear
     2202
     2203> select #2.120
     2204
     22051 model selected 
     2206
     2207> select add #2.112
     2208
     22092 models selected 
     2210
     2211> select add #2.197
     2212
     22133 models selected 
     2214
     2215> select add #2.195
     2216
     22174 models selected 
     2218
     2219> select subtract #2.195
     2220
     22213 models selected 
     2222
     2223> select add #2.191
     2224
     22254 models selected 
     2226
     2227> select add #2.59
     2228
     22295 models selected 
     2230
     2231> select add #2.19
     2232
     22336 models selected 
     2234
     2235> select subtract #2.19
     2236
     22375 models selected 
     2238
     2239> select add #2.183
     2240
     22416 models selected 
     2242
     2243> select add #2.220
     2244
     22457 models selected 
     2246
     2247> select add #2.218
     2248
     22498 models selected 
     2250
     2251> select subtract #2.218
     2252
     22537 models selected 
     2254
     2255> select add #2.188
     2256
     22578 models selected 
     2258
     2259> select add #2.207
     2260
     22619 models selected 
     2262
     2263> select subtract #2.207
     2264
     22658 models selected 
     2266
     2267> select add #2.211
     2268
     22699 models selected 
     2270
     2271> select add #2.163
     2272
     227310 models selected 
     2274
     2275> select add #2.5
     2276
     227711 models selected 
     2278
     2279> select add #2.137
     2280
     228112 models selected 
     2282
     2283> select add #2.146
     2284
     228513 models selected 
     2286
     2287> select add #2.16
     2288
     228914 models selected 
     2290
     2291> select add #2.169
     2292
     229315 models selected 
     2294
     2295> select add #2.63
     2296
     229716 models selected 
     2298
     2299> select add #2.128
     2300
     230117 models selected 
     2302
     2303> select add #2.100
     2304
     230518 models selected 
     2306Grouped 18 regions 
     2307
     2308> select #2.179
     2309
     23101 model selected 
     2311Ungrouped to 6 regions 
     2312
     2313> select clear
     2314
     2315> select #2.8
     2316
     23171 model selected 
     2318
     2319> select add #2.5
     2320
     23212 models selected 
     2322
     2323> select add #2.150
     2324
     23253 models selected 
     2326
     2327> select clear
     2328
     2329> select #2.150
     2330
     23311 model selected 
     2332Ungrouped to 4 regions 
     2333
     2334> select #2.58
     2335
     23361 model selected 
     2337
     2338> select add #2.3
     2339
     23402 models selected 
     2341
     2342> select add #2.5
     2343
     23443 models selected 
     2345
     2346> select add #2.8
     2347
     23484 models selected 
     2349Grouped 4 regions 
     2350
     2351> select #2.140
     2352
     23531 model selected 
     2354Ungrouped to 4 regions 
     2355
     2356> select #2.63
     2357
     23581 model selected 
     2359
     2360> select add #2.3
     2361
     23622 models selected 
     2363Grouped 2 regions 
     2364
     2365> select #2.132
     2366
     23671 model selected 
     2368
     2369> select add #2.3
     2370
     23712 models selected 
     2372Grouped 2 regions 
     2373
     2374> select #2.126
     2375
     23761 model selected 
     2377Ungrouped to 6 regions 
     2378Ungrouped to 7 regions 
     2379
     2380> select #2.75
     2381
     23821 model selected 
     2383
     2384> select add #2.3
     2385
     23862 models selected 
     2387
     2388> select subtract #2.3
     2389
     23901 model selected 
     2391
     2392The cached device pixel ratio value was stale on window expose. Please file a
     2393QTBUG which explains how to reproduce. 
     2394
     2395> select clear
     2396
     2397> select #2.75
     2398
     23991 model selected 
     2400
     2401> select add #2.3
     2402
     24032 models selected 
     2404Grouped 2 regions 
     2405Ungrouped to 2 regions 
     2406Grouped 2 regions 
     2407
     2408> select clear
     2409
     2410> select #2.111
     2411
     24121 model selected 
     2413Ungrouped to 2 regions 
     2414Ungrouped to 8 regions 
     2415
     2416> select #2.78
     2417
     24181 model selected 
     2419
     2420> select add #2.82
     2421
     24222 models selected 
     2423
     2424> select add #2.3
     2425
     24263 models selected 
     2427
     2428> select clear
     2429
     2430> select #2.78
     2431
     24321 model selected 
     2433
     2434> select #2.82
     2435
     24361 model selected 
     2437Ungrouped to 0 regions 
     2438Ungrouped to 6 regions 
     2439
     2440> select #2.78
     2441
     24421 model selected 
     2443
     2444> select add #2.3
     2445
     24462 models selected 
     2447
     2448> select #2.78
     2449
     24501 model selected 
     2451
     2452> select #2.3
     2453
     24541 model selected 
     2455
     2456> select #2.195
     2457
     24581 model selected 
     2459Ungrouped to 5 regions 
     2460
     2461> select #2.38
     2462
     24631 model selected 
     2464
     2465> select add #2.3
     2466
     24672 models selected 
     2468Grouped 2 regions 
     2469
     2470> select #2.187
     2471
     24721 model selected 
     2473Ungrouped to 5 regions 
     2474Ungrouped to 6 regions 
     2475
     2476> select #2.98
     2477
     24781 model selected 
     2479
     2480> select add #2.3
     2481
     24822 models selected 
     2483Grouped 2 regions 
     2484
     2485> select #2.144
     2486
     24871 model selected 
     2488
     2489> select add #2.3
     2490
     24912 models selected 
     2492
     2493> select add #2.7
     2494
     24953 models selected 
     2496
     2497> select subtract #2.7
     2498
     24992 models selected 
     2500Grouped 2 regions 
     2501
     2502> select clear
     2503
     2504> select #2.7
     2505
     25061 model selected 
     2507Ungrouped to 5 regions 
     2508Ungrouped to 3 regions 
     2509
     2510> select #2.104
     2511
     25121 model selected 
     2513
     2514> select add #2.3
     2515
     25162 models selected 
     2517Grouped 2 regions 
     2518
     2519> select #2.14
     2520
     25211 model selected 
     2522Ungrouped to 4 regions 
     2523
     2524> select #2.105
     2525
     25261 model selected 
     2527
     2528> select add #2.3
     2529
     25302 models selected 
     2531Grouped 2 regions 
     2532
     2533> select #2.218
     2534
     25351 model selected 
     2536Ungrouped to 6 regions 
     2537Ungrouped to 2 regions 
     2538
     2539> select #2.115
     2540
     25411 model selected 
     2542
     2543> select add #2.3
     2544
     25452 models selected 
     2546Grouped 2 regions 
     2547
     2548> select #2.3
     2549
     25501 model selected 
     2551Ungrouped to 2 regions 
     2552Ungrouped to 4 regions 
     2553Ungrouped to 20 regions 
     2554
     2555> select clear
     2556
     2557> select #2.169
     2558
     25591 model selected 
     2560Ungrouped to 4 regions 
     2561
     2562> select #2.197
     2563
     25641 model selected 
     2565Ungrouped to 2 regions 
     2566
     2567> select #2.198
     2568
     25691 model selected 
     2570
     2571> select add #2.195
     2572
     25732 models selected 
     2574Grouped 2 regions 
     2575
     2576> select add #2.163
     2577
     25782 models selected 
     2579
     2580> select add #2.131
     2581
     25823 models selected 
     2583
     2584> select add #2.112
     2585
     25864 models selected 
     2587
     2588> select add #2.183
     2589
     25905 models selected 
     2591
     2592> select add #2.181
     2593
     25946 models selected 
     2595
     2596> select add #2.177
     2597
     25987 models selected 
     2599
     2600> select add #2.187
     2601
     26028 models selected 
     2603
     2604> select add #2.115
     2605
     26069 models selected 
     2607
     2608> select add #2.188
     2609
     261010 models selected 
     2611
     2612> select add #2.128
     2613
     261411 models selected 
     2615
     2616> select add #2.146
     2617
     261812 models selected 
     2619
     2620> select add #2.140
     2621
     262213 models selected 
     2623
     2624> select add #2.126
     2625
     262614 models selected 
     2627
     2628> select add #2.159
     2629
     263015 models selected 
     2631
     2632> select add #2.125
     2633
     263416 models selected 
     2635
     2636> select add #2.179
     2637
     263817 models selected 
     2639
     2640> select add #2.132
     2641
     264218 models selected 
     2643
     2644> select add #2.137
     2645
     264619 models selected 
     2647
     2648> select add #2.190
     2649
     265020 models selected 
     2651
     2652> select add #2.124
     2653
     265421 models selected 
     2655
     2656> select add #2.130
     2657
     265822 models selected 
     2659
     2660> select add #2.133
     2661
     266223 models selected 
     2663
     2664> select add #2.3
     2665
     266624 models selected 
     2667
     2668> select add #2.182
     2669
     267025 models selected 
     2671
     2672> select add #2.189
     2673
     267426 models selected 
     2675
     2676> select add #2.156
     2677
     267827 models selected 
     2679
     2680> select add #2.144
     2681
     268228 models selected 
     2683
     2684> select add #2.150
     2685
     268629 models selected 
     2687Grouped 29 regions 
     2688Showing 180 region surfaces 
     2689
     2690> select clear
     2691
     2692> select #2.1
     2693
     26941 model selected 
     2695Opened All_periplasm_imasked as #5, grid size 220,220,220, pixel 4.3, shown at
     2696step 1, values float32 
     2697
     2698> select #2.1
     2699
     27001 model selected 
     2701
     2702> select add #2.3
     2703
     27042 models selected 
     2705Grouped 2 regions 
     2706Opened All_periplasm_imasked as #6, grid size 220,220,220, pixel 4.3, shown at
     2707step 1, values float32 
     2708Segmenting All_periplasm_imasked, density threshold 0.005152 
     2709Showing 56 region surfaces 
     2710848 watershed regions, grouped to 56 regions 
     2711Showing All_periplasm_imasked.seg - 56 regions, 56 surfaces 
     2712
     2713> hide #!5 models
     2714
     2715> hide #!6 models
     2716
     2717The cached device pixel ratio value was stale on window expose. Please file a
     2718QTBUG which explains how to reproduce. 
     2719
     2720> save /Users/shoichitachiyama/Desktop/Chimera-Dec11_2024/Cage-spoke.mrc
     2721> models #6
     2722
     2723> save /Users/shoichitachiyama/Desktop/Chimera-Dec11_2024/SegmentationC1.cxs
     2724> includeMaps true
     2725
     2726> close session
     2727
     2728> open /Users/shoichitachiyama/Desktop/For-Fig4FG-3_Dec112024.cxs
    18422729
    18432730Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
    … …  
    25453432opened ChimeraX session 
    25463433
    2547 > hide #!20 models
    2548 
    2549 > lighting soft
    2550 
    2551 > lighting simple
    2552 
    2553 > hide #!20-514 models
    2554 
    2555 > show #!501 models
    2556 
    2557 > show #!502 models
    2558 
    2559 > show #!356 models
    2560 
    2561 > hide #!356 models
    2562 
    2563 > show #!195 models
    2564 
    2565 > ui tool show "Side View"
    2566 
    2567 > color #195 #797979ff models
    2568 
    2569 > color #195 #7979793f models
    2570 
    2571 > color #195 #79797940 models
    2572 
    2573 > open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
    2574 > from_June2024/July_2024/Final-version_model/Flo_PflA_Local/For-reviewer-
    2575 > response/2xCage_Dec112024.pdb
    2576 
    2577 Chain information for 2xCage_Dec112024.pdb 
    2578 --- 
    2579 Chain | Description 
    2580 180.1/A 180.2/A | No description available 
    2581 180.1/B 180.2/B | No description available 
    2582  
    2583 
    2584 > select add #180
    2585 
    2586 5540 atoms, 5658 bonds, 672 residues, 3 models selected 
    2587 
    2588 > ui mousemode right "translate selected models"
    2589 
    2590 > view matrix models #180,1,0,0,496.07,0,1,0,299.96,0,0,1,537.23
    2591 
    2592 > view matrix models #180,1,0,0,443.22,0,1,0,98.18,0,0,1,500.89
    2593 
    2594 > view matrix models #180,1,0,0,520.63,0,1,0,120.03,0,0,1,535.46
    2595 
    2596 > ui mousemode right "rotate selected models"
    2597 
    2598 > view matrix models
    2599 > #180,0.55567,-0.82363,-0.11343,580.11,0.77037,0.56137,-0.30231,5.4369,0.31267,0.080607,0.94644,490.54
    2600 
    2601 > view matrix models
    2602 > #180,0.35687,0.93008,0.087107,589.69,-0.93401,0.35362,0.050816,249.07,0.01646,-0.099493,0.9949,534.41
    2603 
    2604 > view matrix models
    2605 > #180,0.22903,0.96621,0.11823,607.76,-0.97322,0.22484,0.047827,256.15,0.019629,-0.12602,0.99183,534.24
    2606 
    2607 > view matrix models
    2608 > #180,0.27284,0.95404,-0.12392,578.65,-0.96192,0.27272,-0.018312,247.25,0.016326,0.1242,0.99212,529.63
    2609 
    2610 > ui mousemode right "translate selected models"
    2611 
    2612 > view matrix models
    2613 > #180,0.27284,0.95404,-0.12392,572.44,-0.96192,0.27272,-0.018312,245.2,0.016326,0.1242,0.99212,527.9
    2614 
    2615 > view matrix models
    2616 > #180,0.27284,0.95404,-0.12392,569.5,-0.96192,0.27272,-0.018312,271.7,0.016326,0.1242,0.99212,532.06
    2617 
    2618 > ui mousemode right "rotate selected models"
    2619 
    2620 > view matrix models
    2621 > #180,0.27086,0.95799,-0.094261,572.61,-0.96246,0.2713,-0.008322,272.78,0.017601,0.092976,0.99551,532.86
    2622 
    2623 > ui mousemode right "translate selected models"
    2624 
    2625 > view matrix models
    2626 > #180,0.27086,0.95799,-0.094261,569.7,-0.96246,0.2713,-0.008322,271.76,0.017601,0.092976,0.99551,532
    2627 
    2628 > ui mousemode right "rotate selected models"
    2629 
    2630 > view matrix models
    2631 > #180,0.27551,0.95778,-0.082193,570.33,-0.96096,0.27666,0.0027414,272.56,0.025365,0.078229,0.99661,531.45
    2632 
    2633 > view matrix models
    2634 > #180,0.27322,0.95749,-0.092486,569.59,-0.96162,0.2744,1.6436e-05,272.42,0.025394,0.088932,0.99571,531.14
    2635 
    2636 > ui mousemode right "translate selected models"
    2637 
    2638 > view matrix models
    2639 > #180,0.27322,0.95749,-0.092486,570.28,-0.96162,0.2744,1.6436e-05,272.9,0.025394,0.088932,0.99571,529.72
    2640 
    2641 > ui mousemode right "rotate selected models"
    2642 
    2643 > view matrix models
    2644 > #180,0.27248,0.95713,-0.098256,569.81,-0.96184,0.2736,-0.0022305,272.72,0.024747,0.095115,0.99516,529.62
    2645 
    2646 > select subtract #180
    2647 
    2648 Nothing selected 
    2649 
    2650 > select add #180.1
    2651 
    2652 2770 atoms, 2829 bonds, 336 residues, 1 model selected 
    2653 
    2654 > ui mousemode right "translate selected models"
    2655 
    2656 > view matrix models
    2657 > #180.1,1,-2.7539e-16,3.4694e-17,-0.14513,4.2978e-16,1,-4.1633e-17,4.5622,-4.5103e-17,-2.7756e-17,1,1.0106
    2658 
    2659 > view matrix models
    2660 > #180.1,1,-3.0835e-16,3.8164e-17,-10.33,7.7672e-16,1,-4.1633e-17,4.447,-1.5959e-16,-4.1633e-17,1,2.5051
    2661 
    2662 > ui mousemode right "rotate selected models"
    2663 
    2664 > view matrix models
    2665 > #180.1,0.98051,-0.19315,0.035856,-6.7204,0.19409,0.98067,-0.024798,-21.608,-0.030373,0.031274,0.99905,6.4385
    2666 
    2667 > select clear
    2668 
    2669 > select add #180.1
    2670 
    2671 2770 atoms, 2829 bonds, 336 residues, 1 model selected 
    2672 
    2673 > view matrix models
    2674 > #180.1,0.97877,-0.20494,0.0043171,-9.5704,0.20483,0.97862,0.018706,-18.884,-0.0080584,-0.017425,0.99982,3.2767
    2675 
    2676 > select clear
    2677 
    2678 > select add #180
    2679 
    2680 5540 atoms, 5658 bonds, 672 residues, 3 models selected 
    2681 
    2682 > view matrix models
    2683 > #180,0.28017,0.95685,-0.07715,570.97,-0.95885,0.28279,0.02523,274.86,0.045958,0.066906,0.9967,527.85
    2684 
    2685 > select clear
    2686 
    2687 > undo
    2688 
    2689 > select clear
    2690 
    2691 > select add #180
    2692 
    2693 5540 atoms, 5658 bonds, 672 residues, 3 models selected 
    2694 
    2695 > save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
    2696 > from_June2024/July_2024/Final-version_model/Flo_PflA_Local/For-reviewer-
    2697 > response/Fixed_2xCage_Dec112024.pdb selectedOnly true
    2698 
    2699 > combine #180 modelId #515 name Fixed_Cage_Dec112024
    2700 
    2701 Remapping chain ID 'A' in 2xCage_Dec112024.pdb #180.2 to 'C' 
    2702 Remapping chain ID 'B' in 2xCage_Dec112024.pdb #180.2 to 'D' 
    2703 
    2704 > select clear
    2705 
    2706 > show #!113 models
    2707 
    2708 > view orient
    2709 
    2710 > sym #515 C18 copies true center #113
    2711 
    2712 Made 18 copies for Fixed_Cage_Dec112024 symmetry C18 
    2713 
    2714 > color #188 #4a9ed2ff models
    2715 
    2716 > hide #!180 models
    2717 
    2718 > select add #188
    2719 
    2720 99720 atoms, 101844 bonds, 12096 residues, 19 models selected 
    2721 
    2722 > hide sel cartoons
    2723 
    2724 > show sel surfaces
    2725 
    2726 > select clear
    2727 
    2728 > hide #180.1 models
    2729 
    2730 > hide #180.2 models
    2731 
    2732 > hide #!188 models
    2733 
    2734 > hide #!195 models
    2735 
    2736 > hide #!501 models
    2737 
    2738 > hide #!502 models
    2739 
    2740 > show #!183 models
    2741 
    2742 > show #!184 models
    2743 
    2744 > open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
    2745 > from_June2024/July_2024/Final-version_model/Flo_PflA_Local/For-reviewer-
    2746 > response/1xPflB-1xPflAn.pdb
    2747 
    2748 Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/PflB-PflA-
    2749 project/Start-from_June2024/July_2024/Final-version_model/Flo_PflA_Local/For-
    2750 reviewer-response/1xPflB-1xPflAn.pdb 
    2751 --- 
    2752 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77 
    2753 Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
    2754 3 
    2755 Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
    2756 1 12 
    2757 Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
    2758 1 3 
    2759 Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
    2760 1 3 
    2761 33 messages similar to the above omitted 
    2762  
    2763 Chain information for 1xPflB-1xPflAn.pdb 
    2764 --- 
    2765 Chain | Description 
    2766 189.1/Cj | No description available 
    2767 189.2/Ck | No description available 
    2768  
    2769 
    2770 > select add #189
    2771 
    2772 7938 atoms, 8108 bonds, 980 residues, 3 models selected 
    2773 
    2774 > ui mousemode right "translate selected models"
    2775 
    2776 > view matrix models #189,1,0,0,114.53,0,1,0,189.93,0,0,1,-65.109
    2777 
    2778 > combine #189 modelId #516 name 1xPflB1xPflAn_Dec112024
    2779 
    2780 > select subtract #189
    2781 
    2782 Nothing selected 
    2783 
    2784 > hide #!189 models
    2785 
    2786 > select add #516
    2787 
    2788 7938 atoms, 8108 bonds, 980 residues, 1 model selected 
    2789 
    2790 > hide #!183.2 models
    2791 
    2792 > hide #!183.3 models
    2793 
    2794 > hide #!183.18 models
    2795 
    2796 > view matrix models #516,1,0,0,62.759,0,1,0,212.35,0,0,1,-42.958
    2797 
    2798 > matchmaker #516 to #183.1
    2799 
    2800 Parameters 
    2801 --- 
    2802 Chain pairing | bb 
    2803 Alignment algorithm | Needleman-Wunsch 
    2804 Similarity matrix | BLOSUM-62 
    2805 SS fraction | 0.3 
    2806 Gap open (HH/SS/other) | 18/18/6 
    2807 Gap extend | 1 
    2808 SS matrix |  |  | H | S | O 
    2809 ---|---|---|--- 
    2810 H | 6 | -9 | -6 
    2811 S |  | 6 | -6 
    2812 O |  |  | 4 
    2813 Iteration cutoff | 2 
    2814  
    2815 Matchmaker New_PflB.pdb, chain CJ (#183.1) with 1xPflB1xPflAn_Dec112024, chain
    2816 Cj (#516), sequence alignment score = 4391.6 
    2817 RMSD between 843 pruned atom pairs is 0.001 angstroms; (across all 843 pairs:
    2818 0.001) 
    2819  
    2820 
    2821 > hide #!183.1 models
    2822 
    2823 > hide #!184.19 models
    2824 
    2825 > show #!184.19 models
    2826 
    2827 > hide #!184.19 models
    2828 
    2829 > view orient
    2830 
    2831 > sym #516 C18 copies true center #113
    2832 
    2833 Made 18 copies for 1xPflB1xPflAn_Dec112024 symmetry C18 
    2834 
    2835 > hide #!184.20 models
    2836 
    2837 > hide #!184.21 models
    2838 
    2839 > hide #!184.22 models
    2840 
    2841 > hide #!184.23 models
    2842 
    2843 > hide #!184.24 models
    2844 
    2845 > hide #!184.25 models
    2846 
    2847 > hide #!184.26 models
    2848 
    2849 > hide #!184.27 models
    2850 
    2851 > hide #!184.28 models
    2852 
    2853 > hide #!184.29 models
    2854 
    2855 > hide #!184.30 models
    2856 
    2857 > hide #!184.31 models
    2858 
    2859 > hide #!184.32 models
    2860 
    2861 > hide #!184.34 models
    2862 
    2863 > hide #!184.33 models
    2864 
    2865 > hide #!184.35 models
    2866 
    2867 > hide #!184.36 models
    2868 
    2869 > hide #190.1 models
    2870 
    2871 > show #190.1 models
    2872 
    2873 > split #190
    2874 
    2875 Split 1xPflB1xPflAn_Dec112024 (#190.1) into 2 models 
    2876 Split 1xPflB1xPflAn_Dec112024 (#190.2) into 2 models 
    2877 Split 1xPflB1xPflAn_Dec112024 (#190.3) into 2 models 
    2878 Split 1xPflB1xPflAn_Dec112024 (#190.4) into 2 models 
    2879 Split 1xPflB1xPflAn_Dec112024 (#190.5) into 2 models 
    2880 Split 1xPflB1xPflAn_Dec112024 (#190.6) into 2 models 
    2881 Split 1xPflB1xPflAn_Dec112024 (#190.7) into 2 models 
    2882 Split 1xPflB1xPflAn_Dec112024 (#190.8) into 2 models 
    2883 Split 1xPflB1xPflAn_Dec112024 (#190.9) into 2 models 
    2884 Split 1xPflB1xPflAn_Dec112024 (#190.10) into 2 models 
    2885 Split 1xPflB1xPflAn_Dec112024 (#190.11) into 2 models 
    2886 Split 1xPflB1xPflAn_Dec112024 (#190.12) into 2 models 
    2887 Split 1xPflB1xPflAn_Dec112024 (#190.13) into 2 models 
    2888 Split 1xPflB1xPflAn_Dec112024 (#190.14) into 2 models 
    2889 Split 1xPflB1xPflAn_Dec112024 (#190.15) into 2 models 
    2890 Split 1xPflB1xPflAn_Dec112024 (#190.16) into 2 models 
    2891 Split 1xPflB1xPflAn_Dec112024 (#190.17) into 2 models 
    2892 Split 1xPflB1xPflAn_Dec112024 (#190.18) into 2 models 
    2893 Chain information for 1xPflB1xPflAn_Dec112024 Cj #190.1.1 
    2894 --- 
    2895 Chain | Description 
    2896 Cj | No description available 
    2897  
    2898 Chain information for 1xPflB1xPflAn_Dec112024 Ck #190.1.2 
    2899 --- 
    2900 Chain | Description 
    2901 Ck | No description available 
    2902  
    2903 Chain information for 1xPflB1xPflAn_Dec112024 Cj #190.2.1 
    2904 --- 
    2905 Chain | Description 
    2906 Cj | No description available 
    2907  
    2908 Chain information for 1xPflB1xPflAn_Dec112024 Ck #190.2.2 
    2909 --- 
    2910 Chain | Description 
    2911 Ck | No description available 
    2912  
    2913 Chain information for 1xPflB1xPflAn_Dec112024 Cj #190.3.1 
    2914 --- 
    2915 Chain | Description 
    2916 Cj | No description available 
    2917  
    2918 Chain information for 1xPflB1xPflAn_Dec112024 Ck #190.3.2 
    2919 --- 
    2920 Chain | Description 
    2921 Ck | No description available 
    2922  
    2923 Chain information for 1xPflB1xPflAn_Dec112024 Cj #190.4.1 
    2924 --- 
    2925 Chain | Description 
    2926 Cj | No description available 
    2927  
    2928 Chain information for 1xPflB1xPflAn_Dec112024 Ck #190.4.2 
    2929 --- 
    2930 Chain | Description 
    2931 Ck | No description available 
    2932  
    2933 Chain information for 1xPflB1xPflAn_Dec112024 Cj #190.5.1 
    2934 --- 
    2935 Chain | Description 
    2936 Cj | No description available 
    2937  
    2938 Chain information for 1xPflB1xPflAn_Dec112024 Ck #190.5.2 
    2939 --- 
    2940 Chain | Description 
    2941 Ck | No description available 
    2942  
    2943 Chain information for 1xPflB1xPflAn_Dec112024 Cj #190.6.1 
    2944 --- 
    2945 Chain | Description 
    2946 Cj | No description available 
    2947  
    2948 Chain information for 1xPflB1xPflAn_Dec112024 Ck #190.6.2 
    2949 --- 
    2950 Chain | Description 
    2951 Ck | No description available 
    2952  
    2953 Chain information for 1xPflB1xPflAn_Dec112024 Cj #190.7.1 
    2954 --- 
    2955 Chain | Description 
    2956 Cj | No description available 
    2957  
    2958 Chain information for 1xPflB1xPflAn_Dec112024 Ck #190.7.2 
    2959 --- 
    2960 Chain | Description 
    2961 Ck | No description available 
    2962  
    2963 Chain information for 1xPflB1xPflAn_Dec112024 Cj #190.8.1 
    2964 --- 
    2965 Chain | Description 
    2966 Cj | No description available 
    2967  
    2968 Chain information for 1xPflB1xPflAn_Dec112024 Ck #190.8.2 
    2969 --- 
    2970 Chain | Description 
    2971 Ck | No description available 
    2972  
    2973 Chain information for 1xPflB1xPflAn_Dec112024 Cj #190.9.1 
    2974 --- 
    2975 Chain | Description 
    2976 Cj | No description available 
    2977  
    2978 Chain information for 1xPflB1xPflAn_Dec112024 Ck #190.9.2 
    2979 --- 
    2980 Chain | Description 
    2981 Ck | No description available 
    2982  
    2983 Chain information for 1xPflB1xPflAn_Dec112024 Cj #190.10.1 
    2984 --- 
    2985 Chain | Description 
    2986 Cj | No description available 
    2987  
    2988 Chain information for 1xPflB1xPflAn_Dec112024 Ck #190.10.2 
    2989 --- 
    2990 Chain | Description 
    2991 Ck | No description available 
    2992  
    2993 Chain information for 1xPflB1xPflAn_Dec112024 Cj #190.11.1 
    2994 --- 
    2995 Chain | Description 
    2996 Cj | No description available 
    2997  
    2998 Chain information for 1xPflB1xPflAn_Dec112024 Ck #190.11.2 
    2999 --- 
    3000 Chain | Description 
    3001 Ck | No description available 
    3002  
    3003 Chain information for 1xPflB1xPflAn_Dec112024 Cj #190.12.1 
    3004 --- 
    3005 Chain | Description 
    3006 Cj | No description available 
    3007  
    3008 Chain information for 1xPflB1xPflAn_Dec112024 Ck #190.12.2 
    3009 --- 
    3010 Chain | Description 
    3011 Ck | No description available 
    3012  
    3013 Chain information for 1xPflB1xPflAn_Dec112024 Cj #190.13.1 
    3014 --- 
    3015 Chain | Description 
    3016 Cj | No description available 
    3017  
    3018 Chain information for 1xPflB1xPflAn_Dec112024 Ck #190.13.2 
    3019 --- 
    3020 Chain | Description 
    3021 Ck | No description available 
    3022  
    3023 Chain information for 1xPflB1xPflAn_Dec112024 Cj #190.14.1 
    3024 --- 
    3025 Chain | Description 
    3026 Cj | No description available 
    3027  
    3028 Chain information for 1xPflB1xPflAn_Dec112024 Ck #190.14.2 
    3029 --- 
    3030 Chain | Description 
    3031 Ck | No description available 
    3032  
    3033 Chain information for 1xPflB1xPflAn_Dec112024 Cj #190.15.1 
    3034 --- 
    3035 Chain | Description 
    3036 Cj | No description available 
    3037  
    3038 Chain information for 1xPflB1xPflAn_Dec112024 Ck #190.15.2 
    3039 --- 
    3040 Chain | Description 
    3041 Ck | No description available 
    3042  
    3043 Chain information for 1xPflB1xPflAn_Dec112024 Cj #190.16.1 
    3044 --- 
    3045 Chain | Description 
    3046 Cj | No description available 
    3047  
    3048 Chain information for 1xPflB1xPflAn_Dec112024 Ck #190.16.2 
    3049 --- 
    3050 Chain | Description 
    3051 Ck | No description available 
    3052  
    3053 Chain information for 1xPflB1xPflAn_Dec112024 Cj #190.17.1 
    3054 --- 
    3055 Chain | Description 
    3056 Cj | No description available 
    3057  
    3058 Chain information for 1xPflB1xPflAn_Dec112024 Ck #190.17.2 
    3059 --- 
    3060 Chain | Description 
    3061 Ck | No description available 
    3062  
    3063 Chain information for 1xPflB1xPflAn_Dec112024 Cj #190.18.1 
    3064 --- 
    3065 Chain | Description 
    3066 Cj | No description available 
    3067  
    3068 Chain information for 1xPflB1xPflAn_Dec112024 Ck #190.18.2 
    3069 --- 
    3070 Chain | Description 
    3071 Ck | No description available 
    3072  
    3073 
    3074 > save /Users/shoichitachiyama/Desktop/For-Fig4FG-1_Dec112024.cxs includeMaps
    3075 > true
    3076 
    3077 > close #184.19-36
    3078 
    3079 > close #190.1.1
    3080 
    3081 > close #190.3.1
    3082 
    3083 > close #190.2.1
    3084 
    3085 > close #190.4.1
    3086 
    3087 > close #190.5.1
    3088 
    3089 > close #190.6.1
    3090 
    3091 > close #190.7.1
    3092 
    3093 > close #190.8.1
    3094 
    3095 > close #190.9.1
    3096 
    3097 > close #190.10.1
    3098 
    3099 > close #190.11.1
    3100 
    3101 > close #190.12.1
    3102 
    3103 > close #190.13.1
    3104 
    3105 > close #190.14.1
    3106 
    3107 > close #190.15.1
    3108 
    3109 > close #190.17.1
    3110 
    3111 > close #190.18.1
    3112 
    3113 Cell requested for row 0 is out of bounds for table with 421 rows! Resizing
    3114 table model. 
    3115 
    3116 > color #184.18 #e22d2ede
    3117 
    3118 > color #184.18 #e22d2eff
    3119 
    3120 > color #190 #e22d2eff
    3121 
    3122 > select add #190
    3123 
    3124 34729 atoms, 35528 bonds, 4289 residues, 39 models selected 
    3125 
    3126 > select clear
    3127 
    3128 Drag select of 3 residues 
    3129 
    3130 > close #190.16.1
    3131 
    3132 > show #!183.18 models
    3133 
    3134 > show #!183.1 models
    3135 
    3136 > show #!183.2 models
    3137 
    3138 > show #!183.3 models
    3139 
    3140 > select add #190
    3141 
    3142 19962 atoms, 20448 bonds, 2466 residues, 37 models selected 
    3143 
    3144 > hide sel cartoons
    3145 
    3146 > show sel surfaces
    3147 
    3148 Cell requested for row 225 is out of bounds for table with 420 rows! Resizing
    3149 table model. 
    3150 
    3151 > select clear
    3152 
    3153 > save /Users/shoichitachiyama/Desktop/For-Fig4FG-2_Dec112024.cxs includeMaps
    3154 > true
    3155 
    3156 > hide #!183 models
    3157 
    3158 > hide #!184 models
    3159 
    3160 > hide #!190 models
    3161 
    3162 Cell requested for row 166 is out of bounds for table with 366 rows! Resizing
    3163 table model. 
    3164 
    3165 > show #!169 models
    3166 
    3167 > show #!168 models
    3168 
    3169 > show #!167 models
    3170 
    3171 > show #!101 models
    3172 
    3173 > show #!124 models
    3174 
    3175 > open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
    3176 > from_June2024/July_2024/Final-version_model/Flo_PflA_Local/For-reviewer-
    3177 > response/Stator.pdb
    3178 
    3179 Chain information for Stator.pdb 
    3180 --- 
    3181 Chain | Description 
    3182 191.1/? | No description available 
    3183 191.2/C 191.3/D 191.4/E 191.5/F 191.6/G 191.7/H 191.8/I 191.9/J 191.10/K 191.11/L | No description available 
    3184 191.12/K | No description available 
    3185 191.12/L | No description available 
    3186  
    3187 
    3188 > select add #191
    3189 
    3190 21694 atoms, 22006 bonds, 2748 residues, 13 models selected 
    3191 
    3192 > view matrix models #191,1,0,0,522.33,0,1,0,92.81,0,0,1,487.79
    3193 
    3194 > hide #!167 models
    3195 
    3196 > hide #!168 models
    3197 
    3198 > hide #!169 models
    3199 
    3200 > view matrix models #191,1,0,0,561.26,0,1,0,129.1,0,0,1,534.06
    3201 
    3202 > color #124 #905d122e models
    3203 
    3204 > view matrix models #191,1,0,0,553.47,0,1,0,135.94,0,0,1,533.41
    3205 
    3206 > ui mousemode right "rotate selected models"
    3207 
    3208 > view matrix models
    3209 > #191,-0.16916,0.98404,0.055218,500.71,-0.98224,-0.17294,0.072784,279.06,0.081171,-0.041925,0.99582,534.64
    3210 
    3211 > view matrix models
    3212 > #191,-0.17323,0.98376,0.046981,500.2,-0.98271,-0.17582,0.057991,278.17,0.065309,-0.036123,0.99721,534.7
    3213 
    3214 > view matrix models
    3215 > #191,-0.16793,0.98403,0.059066,500.97,-0.98197,-0.17225,0.077845,279.39,0.086776,-0.044928,0.99521,534.7
    3216 
    3217 > ui mousemode right "translate selected models"
    3218 
    3219 > view matrix models
    3220 > #191,-0.16793,0.98403,0.059066,501.76,-0.98197,-0.17225,0.077845,279.4,0.086776,-0.044928,0.99521,534.56
    3221 
    3222 > ui mousemode right "rotate selected models"
    3223 
    3224 > view matrix models
    3225 > #191,-0.046867,0.99707,0.06053,497.05,-0.99665,-0.050739,0.064113,267.78,0.066996,-0.057323,0.99611,536.35
    3226 
    3227 > ui mousemode right "translate selected models"
    3228 
    3229 > ui mousemode right "rotate selected models"
    3230 
    3231 > view matrix models
    3232 > #191,-0.047835,0.99882,-0.0083394,491.49,-0.9977,-0.047376,0.048494,266.28,0.048042,0.01064,0.99879,531.06
    3233 
    3234 > show #!189 models
    3235 
    3236 > hide #!189 models
    3237 
    3238 > show #!183 models
    3239 
    3240 > show #!184 models
    3241 
    3242 > view matrix models
    3243 > #191,-0.5852,-0.80685,0.080823,685.38,0.81083,-0.58347,0.045971,261.23,0.010067,0.092435,0.99567,524.26
    3244 
    3245 > view matrix models
    3246 > #191,-0.58192,-0.80859,0.086911,685.94,0.81266,-0.58224,0.024234,259.34,0.031007,0.084731,0.99592,524.43
    3247 
    3248 > hide #!113 models
    3249 
    3250 > view matrix models
    3251 > #191,0.76116,0.63831,-0.11485,509.03,-0.56227,0.73771,0.37368,211.56,0.32325,-0.21985,0.92042,536.55
    3252 
    3253 > ui mousemode right "translate selected models"
    3254 
    3255 > view matrix models
    3256 > #191,0.76116,0.63831,-0.11485,492.91,-0.56227,0.73771,0.37368,205.39,0.32325,-0.21985,0.92042,538.05
    3257 
    3258 > view matrix models
    3259 > #191,0.76116,0.63831,-0.11485,496.22,-0.56227,0.73771,0.37368,201.31,0.32325,-0.21985,0.92042,539.44
    3260 
    3261 > ui mousemode right "rotate selected models"
    3262 
    3263 > view matrix models
    3264 > #191,0.75354,0.65736,0.0077807,504.87,-0.65657,0.75193,0.05932,177.33,0.033144,-0.049809,0.99821,540.4
    3265 
    3266 > ui mousemode right "translate selected models"
    3267 
    3268 > view matrix models
    3269 > #191,0.75354,0.65736,0.0077807,502.46,-0.65657,0.75193,0.05932,184.08,0.033144,-0.049809,0.99821,540.33
    3270 
    3271 > show #!113 models
    3272 
    3273 > hide #!113 models
    3274 
    3275 > ui mousemode right "rotate selected models"
    3276 
    3277 > view matrix models
    3278 > #191,0.49492,0.86877,0.016893,491.47,-0.86222,0.48859,0.13366,219.94,0.10786,-0.080716,0.99088,540.38
    3279 
    3280 > view matrix models
    3281 > #191,0.46832,0.88251,-0.042972,486.28,-0.88319,0.46898,0.0061661,212.3,0.025595,0.035065,0.99906,532.82
    3282 
    3283 > ui mousemode right "translate selected models"
    3284 
    3285 > view matrix models
    3286 > #191,0.46832,0.88251,-0.042972,486.56,-0.88319,0.46898,0.0061661,212.95,0.025595,0.035065,0.99906,527.23
    3287 
    3288 > view matrix models
    3289 > #191,0.46832,0.88251,-0.042972,486.6,-0.88319,0.46898,0.0061661,212.74,0.025595,0.035065,0.99906,529.43
    3290 
    3291 > view matrix models
    3292 > #191,0.46832,0.88251,-0.042972,484.81,-0.88319,0.46898,0.0061661,212.11,0.025595,0.035065,0.99906,529.56
    3293 
    3294 > ui mousemode right "rotate selected models"
    3295 
    3296 > view matrix models
    3297 > #191,0.46461,0.88443,-0.043781,484.68,-0.88515,0.46527,0.0058092,212.49,0.025508,0.036053,0.99902,529.46
    3298 
    3299 > view matrix models
    3300 > #191,0.4501,0.89175,-0.046933,484.16,-0.89263,0.45078,0.0044555,213.96,0.02513,0.039889,0.99889,529.1
    3301 
    3302 > undo
    3303 
    3304 > view matrix models
    3305 > #191,0.4553,0.88916,-0.045804,484.34,-0.88998,0.45597,0.0049336,213.44,0.025272,0.038518,0.99894,529.23
    3306 
    3307 > view matrix models
    3308 > #191,0.45443,0.88961,-0.04558,484.34,-0.89002,0.45557,0.018149,214.51,0.03691,0.03232,0.9988,529.46
    3309 
    3310 > select clear
    3311 
    3312 > view orient
    3313 
    3314 > show #!113 models
    3315 
    3316 > sym #191 C18 copies true center #113
    3317 
    3318 Made 18 copies for Stator.pdb, Stator.pdb, Stator.pdb, Stator.pdb, Stator.pdb,
    3319 Stator.pdb, Stator.pdb, Stator.pdb, Stator.pdb, Stator.pdb, Stator.pdb,
    3320 Stator.pdb symmetry C18 
    3321 
    3322 > hide #!192.1 models
    3323 
    3324 > show #!192.1 models
    3325 
    3326 > close #192
    3327 
    3328 > show #191.1 models
    3329 
    3330 > hide #191.1 models
    3331 
    3332 > show #191.2 models
    3333 
    3334 > hide #191.2 models
    3335 
    3336 > show #191.12 models
    3337 
    3338 > show #191.11 models
    3339 
    3340 > hide #191.11 models
    3341 
    3342 > color #191.12 #dfba68ff
    3343 
    3344 > color #191.12 #90c5d9ff
    3345 
    3346 > color #191.12 #dfba68ff
    3347 
    3348 > show #191.1 models
    3349 
    3350 > color #191.1 #e5ea15ff
    3351 
    3352 > show #!168 models
    3353 
    3354 > hide #!168.1 models
    3355 
    3356 > show #!168.1 models
    3357 
    3358 > hide #!168 models
    3359 
    3360 > color #191.2 #d5720eff
    3361 
    3362 Cell requested for row 0 is out of bounds for table with 379 rows! Resizing
    3363 table model. 
    3364 
    3365 > show #191.2 models
    3366 
    3367 > color #191.3 #d5720eff
    3368 
    3369 > color #191.4 #d5720eff
    3370 
    3371 > color #191.5 #d5720eff
    3372 
    3373 > color #191.6 #d5720eff
    3374 
    3375 > color #191.7 #d5720eff
    3376 
    3377 > color #191.8 #d5720eff
    3378 
    3379 > color #191.9 #d5720eff
    3380 
    3381 > color #191.10 #d5720eff
    3382 
    3383 > color #191.11 #d5720eff
    3384 
    3385 > show #191.3 models
    3386 
    3387 > show #191.4 models
    3388 
    3389 > show #191.5 models
    3390 
    3391 > show #191.6 models
    3392 
    3393 > show #191.7 models
    3394 
    3395 > show #191.8 models
    3396 
    3397 > show #191.9 models
    3398 
    3399 > show #191.10 models
    3400 
    3401 > show #191.11 models
    3402 
    3403 > hide #!101 models
    3404 
    3405 > view orient
    3406 
    3407 > sym #191 C18 copies true center #113
    3408 
    3409 Made 18 copies for Stator.pdb, Stator.pdb, Stator.pdb, Stator.pdb, Stator.pdb,
    3410 Stator.pdb, Stator.pdb, Stator.pdb, Stator.pdb, Stator.pdb, Stator.pdb,
    3411 Stator.pdb symmetry C18 
    3412 
    3413 > select add #192
    3414 
    3415 390492 atoms, 396108 bonds, 49464 residues, 235 models selected 
    3416 
    3417 > hide sel cartoons
    3418 
    3419 > show sel surfaces
    3420 
    3421 > select clear
    3422 
    3423 > save /Users/shoichitachiyama/Desktop/For-Fig4FG-3_Dec112024.cxs includeMaps
    3424 > true
    3425 
    3426 > show #!188 models
    3427 
    3428 > show #!190 models
    3429 
    3430 > hide #!113 models
    3431 
    3432 > show #!501 models
    3433 
    3434 > show #!502 models
    3435 
    3436 > lighting soft
    3437 
    3438 > save /Users/shoichitachiyama/Desktop/Fig4F.png supersample 2
    3439 > transparentBackground true
    3440 
    3441 > show #!38 models
    3442 
    3443 > show #!39 models
    3444 
    3445 > show #!39-51 models
    3446 
    3447 > show #!354-57 models
    3448 
    3449 > show #!54-57 models
    3450 
    3451 > hide #!54-57 models
    3452 
    3453 > hide #!38-51 models
    3454 
    3455 > turnx 45
    3456 
    3457 Unknown command: turnx 45 
    3458 
    3459 > turn x 45
    3460 
    3461 > turn x -45
    3462 
    3463 > save /Users/shoichitachiyama/Desktop/Fig4G.png supersample 2
    3464 > transparentBackground true
    3465 
    3466 > save /Users/shoichitachiyama/Desktop/For-Fig4FG-3_Dec112024.cxs includeMaps
    3467 > true
    3468 
    3469 > close session
    3470 
    3471 > open /Users/shoichitachiyama/Desktop/For-Fig4FG-3_Dec112024.cxs
    3472 
    3473 Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
    3474 level 0.0144, step 1, values float32 
    3475 Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
    3476 4.3, shown at level 0.0151, step 1, values float32 
    3477 Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
    3478 4.3,4.3,4.3, shown at level 0.00853, step 1, values float32 
    3479 Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
    3480 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    3481 Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
    3482 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    3483 Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
    3484 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    3485 Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
    3486 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    3487 Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
    3488 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    3489 Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
    3490 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    3491 Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
    3492 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    3493 Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
    3494 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    3495 Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
    3496 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    3497 Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
    3498 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    3499 Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
    3500 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    3501 Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
    3502 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    3503 Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
    3504 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    3505 Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
    3506 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    3507 Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
    3508 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    3509 Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
    3510 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    3511 Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
    3512 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    3513 Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
    3514 level 0.0186, step 1, values float32 
    3515 Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
    3516 shown at level 0.0702, step 1, values float32 
    3517 Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
    3518 at level 0.0323, step 1, values float32 
    3519 Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3520 shown at level 0.00933, step 1, values float32 
    3521 Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3522 shown at level 0.00933, step 1, values float32 
    3523 Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3524 shown at level 0.00933, step 1, values float32 
    3525 Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3526 shown at level 0.00933, step 1, values float32 
    3527 Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3528 shown at level 0.00933, step 1, values float32 
    3529 Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3530 shown at level 0.00933, step 1, values float32 
    3531 Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3532 shown at level 0.00933, step 1, values float32 
    3533 Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3534 shown at level 0.00933, step 1, values float32 
    3535 Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3536 shown at level 0.00933, step 1, values float32 
    3537 Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3538 shown at level 0.00933, step 1, values float32 
    3539 Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3540 shown at level 0.00933, step 1, values float32 
    3541 Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3542 shown at level 0.00933, step 1, values float32 
    3543 Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3544 shown at level 0.00933, step 1, values float32 
    3545 Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3546 shown at level 0.00933, step 1, values float32 
    3547 Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3548 shown at level 0.00933, step 1, values float32 
    3549 Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3550 shown at level 0.00933, step 1, values float32 
    3551 Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3552 shown at level 0.00933, step 1, values float32 
    3553 Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3554 shown at level 0.00933, step 1, values float32 
    3555 Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
    3556 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    3557 Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
    3558 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    3559 Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
    3560 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    3561 Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
    3562 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    3563 Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
    3564 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    3565 Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
    3566 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    3567 Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
    3568 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    3569 Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
    3570 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    3571 Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
    3572 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    3573 Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
    3574 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    3575 Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
    3576 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    3577 Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
    3578 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    3579 Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
    3580 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    3581 Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
    3582 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    3583 Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
    3584 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    3585 Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
    3586 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    3587 Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
    3588 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    3589 Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
    3590 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    3591 Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
    3592 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    3593 Opened PflA.mrc as #424, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
    3594 level 0.00712, step 1, values float32 
    3595 Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    3596 at level 0.00712, step 1, values float32 
    3597 Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    3598 at level 0.00712, step 1, values float32 
    3599 Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    3600 at level 0.00712, step 1, values float32 
    3601 Opened PflA.mrc copy as #428, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    3602 at level 0.00712, step 1, values float32 
    3603 Opened PflA.mrc copy as #429, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    3604 at level 0.00712, step 1, values float32 
    3605 Opened PflA.mrc copy as #430, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    3606 at level 0.00712, step 1, values float32 
    3607 Opened PflA.mrc copy as #431, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    3608 at level 0.00712, step 1, values float32 
    3609 Opened PflA.mrc copy as #432, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    3610 at level 0.00712, step 1, values float32 
    3611 Opened PflA.mrc copy as #433, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    3612 at level 0.00712, step 1, values float32 
    3613 Opened PflA.mrc copy as #434, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    3614 at level 0.00712, step 1, values float32 
    3615 Opened PflA.mrc copy as #435, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    3616 at level 0.00712, step 1, values float32 
    3617 Opened PflA.mrc copy as #436, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    3618 at level 0.00712, step 1, values float32 
    3619 Opened PflA.mrc copy as #437, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    3620 at level 0.00712, step 1, values float32 
    3621 Opened PflA.mrc copy as #438, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    3622 at level 0.00712, step 1, values float32 
    3623 Opened PflA.mrc copy as #439, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    3624 at level 0.00712, step 1, values float32 
    3625 Opened PflA.mrc copy as #440, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    3626 at level 0.00712, step 1, values float32 
    3627 Opened PflA.mrc copy as #441, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    3628 at level 0.00712, step 1, values float32 
    3629 Opened Cage_top.mrc as #442, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    3630 at level 0.00712, step 1, values float32 
    3631 Opened Cage_top.mrc copy as #443, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3632 shown at level 0.00712, step 1, values float32 
    3633 Opened Cage_top.mrc copy as #444, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3634 shown at level 0.00712, step 1, values float32 
    3635 Opened Cage_top.mrc copy as #445, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3636 shown at level 0.00712, step 1, values float32 
    3637 Opened Cage_top.mrc copy as #446, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3638 shown at level 0.00712, step 1, values float32 
    3639 Opened Cage_top.mrc copy as #447, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3640 shown at level 0.00712, step 1, values float32 
    3641 Opened Cage_top.mrc copy as #448, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3642 shown at level 0.00712, step 1, values float32 
    3643 Opened Cage_top.mrc copy as #449, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3644 shown at level 0.00712, step 1, values float32 
    3645 Opened Cage_top.mrc copy as #450, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3646 shown at level 0.00712, step 1, values float32 
    3647 Opened Cage_top.mrc copy as #451, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3648 shown at level 0.00712, step 1, values float32 
    3649 Opened Cage_top.mrc copy as #452, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3650 shown at level 0.00712, step 1, values float32 
    3651 Opened Cage_top.mrc copy as #453, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3652 shown at level 0.00712, step 1, values float32 
    3653 Opened Cage_top.mrc copy as #454, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3654 shown at level 0.00712, step 1, values float32 
    3655 Opened Cage_top.mrc copy as #455, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3656 shown at level 0.00712, step 1, values float32 
    3657 Opened Cage_top.mrc copy as #456, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3658 shown at level 0.00712, step 1, values float32 
    3659 Opened Cage_top.mrc copy as #457, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3660 shown at level 0.00712, step 1, values float32 
    3661 Opened Cage_top.mrc copy as #458, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3662 shown at level 0.00712, step 1, values float32 
    3663 Opened Cage_top.mrc copy as #459, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3664 shown at level 0.00712, step 1, values float32 
    3665 Opened MotB_PG.mrc as #460, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
    3666 level 0.00707, step 1, values float32 
    3667 Opened MotB_PG.mrc copy as #461, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3668 shown at level 0.00707, step 1, values float32 
    3669 Opened MotB_PG.mrc copy as #462, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3670 shown at level 0.00707, step 1, values float32 
    3671 Opened MotB_PG.mrc copy as #463, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3672 shown at level 0.00707, step 1, values float32 
    3673 Opened MotB_PG.mrc copy as #464, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3674 shown at level 0.00707, step 1, values float32 
    3675 Opened MotB_PG.mrc copy as #465, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3676 shown at level 0.00707, step 1, values float32 
    3677 Opened MotB_PG.mrc copy as #466, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3678 shown at level 0.00707, step 1, values float32 
    3679 Opened MotB_PG.mrc copy as #467, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3680 shown at level 0.00707, step 1, values float32 
    3681 Opened MotB_PG.mrc copy as #468, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3682 shown at level 0.00707, step 1, values float32 
    3683 Opened MotB_PG.mrc copy as #469, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3684 shown at level 0.00707, step 1, values float32 
    3685 Opened MotB_PG.mrc copy as #470, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3686 shown at level 0.00707, step 1, values float32 
    3687 Opened MotB_PG.mrc copy as #471, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3688 shown at level 0.00707, step 1, values float32 
    3689 Opened MotB_PG.mrc copy as #472, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3690 shown at level 0.00707, step 1, values float32 
    3691 Opened MotB_PG.mrc copy as #473, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3692 shown at level 0.00707, step 1, values float32 
    3693 Opened MotB_PG.mrc copy as #474, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3694 shown at level 0.00707, step 1, values float32 
    3695 Opened MotB_PG.mrc copy as #475, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3696 shown at level 0.00707, step 1, values float32 
    3697 Opened MotB_PG.mrc copy as #476, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3698 shown at level 0.00707, step 1, values float32 
    3699 Opened MotB_PG.mrc copy as #477, grid size 160,160,200, pixel 4.3,4.3,4.3,
    3700 shown at level 0.00707, step 1, values float32 
    3701 Opened New_FliF.mrc gaussian as #479, grid size 256,256,256, pixel 2.1, shown
    3702 at level 0.0115, step 1, values float32 
    3703 Opened New_FlhA.mrc gaussian as #481, grid size 256,256,256, pixel 2.1, shown
    3704 at level 0.00316, step 1, values float32 
    3705 Opened PflBC13.mrc as #482, grid size 256,256,256, pixel 2.1, shown at level
    3706 0.00615, step 1, values float32 
    3707 Opened New_IM_Bottom2.mrc as #483, grid size 256,256,256, pixel 2.1, shown at
    3708 level 0.0072, step 1, values float32 
    3709 Opened New_IM_Bottom2.mrc gaussian as #484, grid size 256,256,256, pixel 2.1,
    3710 shown at level 0.0072, step 1, values float32 
    3711 Opened PflB_C13.mrc as #507, grid size 256,256,256, pixel 2.1, shown at level
    3712 0.0015, step 1, values float32 
    3713 Opened PflB_monomer.mrc as #508, grid size 256,256,256, pixel 2.1, shown at
    3714 level 0.00116, step 1, values float32 
    3715 Opened Unknown-ring.mrc as #509, grid size 256,256,256, pixel 2.1, shown at
    3716 level 0.000608, step 1, values float32 
    3717 Opened PflB_C13.mrc gaussian as #510, grid size 256,256,256, pixel 2.1, shown
    3718 at level 0.00108, step 1, values float32 
    3719 Opened PflB_monomer.mrc gaussian as #511, grid size 256,256,256, pixel 2.1,
    3720 shown at level 0.000387, step 1, values float32 
    3721 Opened Unknown-ring.mrc gaussian as #512, grid size 256,256,256, pixel 2.1,
    3722 shown at level 0.00109, step 1, values float32 
    3723 Opened 0838-disk.mrc gaussian as #513, grid size 240,240,240, pixel 4.3, shown
    3724 at level 0.0153, step 1, values float32 
    3725 Opened 0838-top.mrc gaussian as #514, grid size 240,240,240, pixel 4.3, shown
    3726 at level 0.00979, step 1, values float32 
    3727 Opened HP_C-ring_monomer.mrc copy gaussian as #177.1, grid size 160,160,160,
    3728 pixel 4.2, shown at level 0.04, step 1, values float32 
    3729 Opened HP_C-ring_monomer.mrc copy gaussian as #177.2, grid size 160,160,160,
    3730 pixel 4.2, shown at level 0.04, step 1, values float32 
    3731 Opened HP_C-ring_monomer.mrc copy gaussian as #177.3, grid size 160,160,160,
    3732 pixel 4.2, shown at level 0.04, step 1, values float32 
    3733 Opened HP_C-ring_monomer.mrc copy gaussian as #177.4, grid size 160,160,160,
    3734 pixel 4.2, shown at level 0.04, step 1, values float32 
    3735 Opened HP_C-ring_monomer.mrc copy gaussian as #177.5, grid size 160,160,160,
    3736 pixel 4.2, shown at level 0.04, step 1, values float32 
    3737 Opened HP_C-ring_monomer.mrc copy gaussian as #177.6, grid size 160,160,160,
    3738 pixel 4.2, shown at level 0.04, step 1, values float32 
    3739 Opened HP_C-ring_monomer.mrc copy gaussian as #177.7, grid size 160,160,160,
    3740 pixel 4.2, shown at level 0.04, step 1, values float32 
    3741 Opened HP_C-ring_monomer.mrc copy gaussian as #177.8, grid size 160,160,160,
    3742 pixel 4.2, shown at level 0.04, step 1, values float32 
    3743 Opened HP_C-ring_monomer.mrc copy gaussian as #177.9, grid size 160,160,160,
    3744 pixel 4.2, shown at level 0.04, step 1, values float32 
    3745 Opened HP_C-ring_monomer.mrc copy gaussian as #177.10, grid size 160,160,160,
    3746 pixel 4.2, shown at level 0.04, step 1, values float32 
    3747 Opened HP_C-ring_monomer.mrc copy gaussian as #177.11, grid size 160,160,160,
    3748 pixel 4.2, shown at level 0.04, step 1, values float32 
    3749 Opened HP_C-ring_monomer.mrc copy gaussian as #177.12, grid size 160,160,160,
    3750 pixel 4.2, shown at level 0.04, step 1, values float32 
    3751 Opened HP_C-ring_monomer.mrc copy gaussian as #177.13, grid size 160,160,160,
    3752 pixel 4.2, shown at level 0.04, step 1, values float32 
    3753 Opened HP_C-ring_monomer.mrc copy gaussian as #177.14, grid size 160,160,160,
    3754 pixel 4.2, shown at level 0.04, step 1, values float32 
    3755 Opened HP_C-ring_monomer.mrc copy gaussian as #177.15, grid size 160,160,160,
    3756 pixel 4.2, shown at level 0.04, step 1, values float32 
    3757 Opened HP_C-ring_monomer.mrc copy gaussian as #177.16, grid size 160,160,160,
    3758 pixel 4.2, shown at level 0.04, step 1, values float32 
    3759 Opened HP_C-ring_monomer.mrc copy gaussian as #177.17, grid size 160,160,160,
    3760 pixel 4.2, shown at level 0.04, step 1, values float32 
    3761 Opened HP_C-ring_monomer.mrc copy gaussian as #177.18, grid size 160,160,160,
    3762 pixel 4.2, shown at level 0.04, step 1, values float32 
    3763 Opened HP_C-ring_monomer.mrc copy gaussian as #177.19, grid size 160,160,160,
    3764 pixel 4.2, shown at level 0.04, step 1, values float32 
    3765 Opened HP_C-ring_monomer.mrc copy gaussian as #177.20, grid size 160,160,160,
    3766 pixel 4.2, shown at level 0.04, step 1, values float32 
    3767 Opened HP_C-ring_monomer.mrc copy gaussian as #177.21, grid size 160,160,160,
    3768 pixel 4.2, shown at level 0.04, step 1, values float32 
    3769 Opened HP_C-ring_monomer.mrc copy gaussian as #177.22, grid size 160,160,160,
    3770 pixel 4.2, shown at level 0.04, step 1, values float32 
    3771 Opened HP_C-ring_monomer.mrc copy gaussian as #177.23, grid size 160,160,160,
    3772 pixel 4.2, shown at level 0.04, step 1, values float32 
    3773 Opened HP_C-ring_monomer.mrc copy gaussian as #177.24, grid size 160,160,160,
    3774 pixel 4.2, shown at level 0.04, step 1, values float32 
    3775 Opened HP_C-ring_monomer.mrc copy gaussian as #177.25, grid size 160,160,160,
    3776 pixel 4.2, shown at level 0.04, step 1, values float32 
    3777 Opened HP_C-ring_monomer.mrc copy gaussian as #177.26, grid size 160,160,160,
    3778 pixel 4.2, shown at level 0.04, step 1, values float32 
    3779 Opened HP_C-ring_monomer.mrc copy gaussian as #177.27, grid size 160,160,160,
    3780 pixel 4.2, shown at level 0.04, step 1, values float32 
    3781 Opened HP_C-ring_monomer.mrc copy gaussian as #177.28, grid size 160,160,160,
    3782 pixel 4.2, shown at level 0.04, step 1, values float32 
    3783 Opened HP_C-ring_monomer.mrc copy gaussian as #177.29, grid size 160,160,160,
    3784 pixel 4.2, shown at level 0.04, step 1, values float32 
    3785 Opened HP_C-ring_monomer.mrc copy gaussian as #177.30, grid size 160,160,160,
    3786 pixel 4.2, shown at level 0.04, step 1, values float32 
    3787 Opened HP_C-ring_monomer.mrc copy gaussian as #177.31, grid size 160,160,160,
    3788 pixel 4.2, shown at level 0.04, step 1, values float32 
    3789 Opened HP_C-ring_monomer.mrc copy gaussian as #177.32, grid size 160,160,160,
    3790 pixel 4.2, shown at level 0.04, step 1, values float32 
    3791 Opened HP_C-ring_monomer.mrc copy gaussian as #177.33, grid size 160,160,160,
    3792 pixel 4.2, shown at level 0.04, step 1, values float32 
    3793 Opened HP_C-ring_monomer.mrc copy gaussian as #177.34, grid size 160,160,160,
    3794 pixel 4.2, shown at level 0.04, step 1, values float32 
    3795 Opened HP_C-ring_monomer.mrc copy gaussian as #177.35, grid size 160,160,160,
    3796 pixel 4.2, shown at level 0.04, step 1, values float32 
    3797 Opened HP_C-ring_monomer.mrc copy gaussian as #177.36, grid size 160,160,160,
    3798 pixel 4.2, shown at level 0.04, step 1, values float32 
    3799 Opened HP_C-ring_monomer.mrc copy gaussian as #177.37, grid size 160,160,160,
    3800 pixel 4.2, shown at level 0.04, step 1, values float32 
    3801 Opened HP_C-ring_monomer.mrc copy gaussian as #177.38, grid size 160,160,160,
    3802 pixel 4.2, shown at level 0.04, step 1, values float32 
    3803 Opened HP_C-ring_monomer.mrc copy gaussian as #177.39, grid size 160,160,160,
    3804 pixel 4.2, shown at level 0.04, step 1, values float32 
    3805 Opened HP_C-ring_monomer.mrc copy gaussian as #177.40, grid size 160,160,160,
    3806 pixel 4.2, shown at level 0.04, step 1, values float32 
    3807 Opened FlgV_monomer.mrc gaussian as #259.1, grid size 160,160,160, pixel 4.2,
    3808 shown at level 0.015, step 1, values float32 
    3809 Opened FlgV_monomer.mrc copy gaussian as #259.2, grid size 160,160,160, pixel
    3810 4.2, shown at level 0.015, step 1, values float32 
    3811 Opened FlgV_monomer.mrc copy gaussian as #259.3, grid size 160,160,160, pixel
    3812 4.2, shown at level 0.015, step 1, values float32 
    3813 Opened FlgV_monomer.mrc copy gaussian as #259.4, grid size 160,160,160, pixel
    3814 4.2, shown at level 0.015, step 1, values float32 
    3815 Opened FlgV_monomer.mrc copy gaussian as #259.5, grid size 160,160,160, pixel
    3816 4.2, shown at level 0.015, step 1, values float32 
    3817 Opened FlgV_monomer.mrc copy gaussian as #259.6, grid size 160,160,160, pixel
    3818 4.2, shown at level 0.015, step 1, values float32 
    3819 Opened FlgV_monomer.mrc copy gaussian as #259.7, grid size 160,160,160, pixel
    3820 4.2, shown at level 0.015, step 1, values float32 
    3821 Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel
    3822 4.2, shown at level 0.015, step 1, values float32 
    3823 Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel
    3824 4.2, shown at level 0.015, step 1, values float32 
    3825 Opened FlgV_monomer.mrc copy gaussian as #259.10, grid size 160,160,160, pixel
    3826 4.2, shown at level 0.015, step 1, values float32 
    3827 Opened FlgV_monomer.mrc copy gaussian as #259.11, grid size 160,160,160, pixel
    3828 4.2, shown at level 0.015, step 1, values float32 
    3829 Opened FlgV_monomer.mrc copy gaussian as #259.12, grid size 160,160,160, pixel
    3830 4.2, shown at level 0.015, step 1, values float32 
    3831 Opened FlgV_monomer.mrc copy gaussian as #259.13, grid size 160,160,160, pixel
    3832 4.2, shown at level 0.015, step 1, values float32 
    3833 Opened FlgV_monomer.mrc copy gaussian as #259.14, grid size 160,160,160, pixel
    3834 4.2, shown at level 0.015, step 1, values float32 
    3835 Opened FlgV_monomer.mrc copy gaussian as #259.15, grid size 160,160,160, pixel
    3836 4.2, shown at level 0.015, step 1, values float32 
    3837 Opened FlgV_monomer.mrc copy gaussian as #259.16, grid size 160,160,160, pixel
    3838 4.2, shown at level 0.015, step 1, values float32 
    3839 Opened FlgV_monomer.mrc copy gaussian as #259.17, grid size 160,160,160, pixel
    3840 4.2, shown at level 0.015, step 1, values float32 
    3841 Opened FlgV_monomer.mrc copy gaussian as #259.18, grid size 160,160,160, pixel
    3842 4.2, shown at level 0.015, step 1, values float32 
    3843 Opened FlgV_monomer.mrc copy gaussian as #259.19, grid size 160,160,160, pixel
    3844 4.2, shown at level 0.015, step 1, values float32 
    3845 Opened FlgV_monomer.mrc copy gaussian as #259.20, grid size 160,160,160, pixel
    3846 4.2, shown at level 0.015, step 1, values float32 
    3847 Opened FlgV_monomer.mrc copy gaussian as #259.21, grid size 160,160,160, pixel
    3848 4.2, shown at level 0.015, step 1, values float32 
    3849 Opened FlgY-with-joints.mrc as #93, grid size 220,220,220, pixel 4.3, shown at
    3850 level 2.81, step 1, values float32 
    3851 Opened Cage_1unit.mrc copy as #85, grid size 240,240,240, pixel 2.1, shown at
    3852 level 0.0446, step 1, values float32 
    3853 Opened FliL.mrc copy as #101, grid size 240,240,240, pixel 2.1, shown at level
    3854 0.0732, step 1, values float32 
    3855 Opened FliL.mrc copy as #102, grid size 240,240,240, pixel 2.1, shown at level
    3856 0.0732, step 1, values float32 
    3857 Opened FliL.mrc copy as #103, grid size 240,240,240, pixel 2.1, shown at level
    3858 0.0732, step 1, values float32 
    3859 Opened FliL.mrc copy as #104, grid size 240,240,240, pixel 2.1, shown at level
    3860 0.0732, step 1, values float32 
    3861 Opened FliL.mrc copy as #105, grid size 240,240,240, pixel 2.1, shown at level
    3862 0.0732, step 1, values float32 
    3863 Opened FliL.mrc copy as #106, grid size 240,240,240, pixel 2.1, shown at level
    3864 0.0732, step 1, values float32 
    3865 Opened FliL.mrc copy as #107, grid size 240,240,240, pixel 2.1, shown at level
    3866 0.0732, step 1, values float32 
    3867 Opened FliL.mrc copy as #108, grid size 240,240,240, pixel 2.1, shown at level
    3868 0.0732, step 1, values float32 
    3869 Opened FliL.mrc copy as #109, grid size 240,240,240, pixel 2.1, shown at level
    3870 0.0732, step 1, values float32 
    3871 Opened FliL.mrc copy as #110, grid size 240,240,240, pixel 2.1, shown at level
    3872 0.0732, step 1, values float32 
    3873 Opened FliL.mrc copy as #111, grid size 240,240,240, pixel 2.1, shown at level
    3874 0.0732, step 1, values float32 
    3875 Opened FliL.mrc copy as #112, grid size 240,240,240, pixel 2.1, shown at level
    3876 0.0732, step 1, values float32 
    3877 Opened FliL.mrc copy as #114, grid size 240,240,240, pixel 2.1, shown at level
    3878 0.0732, step 1, values float32 
    3879 Opened FliL.mrc copy as #116, grid size 240,240,240, pixel 2.1, shown at level
    3880 0.0732, step 1, values float32 
    3881 Opened FliL.mrc copy as #117, grid size 240,240,240, pixel 2.1, shown at level
    3882 0.0732, step 1, values float32 
    3883 Opened FliL.mrc copy as #118, grid size 240,240,240, pixel 2.1, shown at level
    3884 0.0732, step 1, values float32 
    3885 Opened FliL.mrc copy as #119, grid size 240,240,240, pixel 2.1, shown at level
    3886 0.0732, step 1, values float32 
    3887 Opened FliL.mrc copy as #120, grid size 240,240,240, pixel 2.1, shown at level
    3888 0.0732, step 1, values float32 
    3889 Opened Cage.mrc copy as #195, grid size 240,240,240, pixel 2.1, shown at level
    3890 0.0891, step 1, values float32 
    3891 Opened Cage.mrc copy as #196, grid size 240,240,240, pixel 2.1, shown at level
    3892 0.0891, step 1, values float32 
    3893 Opened Cage.mrc copy as #197, grid size 240,240,240, pixel 2.1, shown at level
    3894 0.0891, step 1, values float32 
    3895 Opened Cage.mrc copy as #198, grid size 240,240,240, pixel 2.1, shown at level
    3896 0.0891, step 1, values float32 
    3897 Opened Cage.mrc copy as #199, grid size 240,240,240, pixel 2.1, shown at level
    3898 0.0891, step 1, values float32 
    3899 Opened Cage.mrc copy as #200, grid size 240,240,240, pixel 2.1, shown at level
    3900 0.0891, step 1, values float32 
    3901 Opened Cage.mrc copy as #201, grid size 240,240,240, pixel 2.1, shown at level
    3902 0.0891, step 1, values float32 
    3903 Opened Cage.mrc copy as #202, grid size 240,240,240, pixel 2.1, shown at level
    3904 0.0891, step 1, values float32 
    3905 Opened Cage.mrc copy as #203, grid size 240,240,240, pixel 2.1, shown at level
    3906 0.0891, step 1, values float32 
    3907 Opened Cage.mrc copy as #204, grid size 240,240,240, pixel 2.1, shown at level
    3908 0.0891, step 1, values float32 
    3909 Opened Cage.mrc copy as #205, grid size 240,240,240, pixel 2.1, shown at level
    3910 0.0891, step 1, values float32 
    3911 Opened Cage.mrc copy as #206, grid size 240,240,240, pixel 2.1, shown at level
    3912 0.0891, step 1, values float32 
    3913 Opened Cage.mrc copy as #207, grid size 240,240,240, pixel 2.1, shown at level
    3914 0.0891, step 1, values float32 
    3915 Opened Cage.mrc copy as #208, grid size 240,240,240, pixel 2.1, shown at level
    3916 0.0891, step 1, values float32 
    3917 Opened Cage.mrc copy as #209, grid size 240,240,240, pixel 2.1, shown at level
    3918 0.0891, step 1, values float32 
    3919 Opened Cage.mrc copy as #210, grid size 240,240,240, pixel 2.1, shown at level
    3920 0.0891, step 1, values float32 
    3921 Opened Cage.mrc copy as #211, grid size 240,240,240, pixel 2.1, shown at level
    3922 0.0891, step 1, values float32 
    3923 Opened Cage.mrc copy as #212, grid size 240,240,240, pixel 2.1, shown at level
    3924 0.0891, step 1, values float32 
    3925 Opened PflA_new.mrc as #68, grid size 240,240,240, pixel 2.1, shown at level
    3926 0.162, step 1, values float32 
    3927 Opened Unknown_near_PflA.mrc as #69, grid size 240,240,240, pixel 2.1, shown
    3928 at level 0.127, step 1, values float32 
    3929 Opened PflB_new.mrc as #70, grid size 240,240,240, pixel 2.1, shown at level
    3930 0.0467, step 1, values float32 
    3931 Opened Top-cage.mrc as #71, grid size 240,240,240, pixel 2.1, shown at level
    3932 0.143, step 1, values float32 
    3933 Opened PflA_new.mrc copy as #1, grid size 240,240,240, pixel 2.1, shown at
    3934 level 0.162, step 1, values float32 
    3935 Opened PflA_new.mrc copy as #2, grid size 240,240,240, pixel 2.1, shown at
    3936 level 0.162, step 1, values float32 
    3937 Opened PflA_new.mrc copy as #3, grid size 240,240,240, pixel 2.1, shown at
    3938 level 0.162, step 1, values float32 
    3939 Opened PflA_new.mrc copy as #4, grid size 240,240,240, pixel 2.1, shown at
    3940 level 0.162, step 1, values float32 
    3941 Opened PflA_new.mrc copy as #5, grid size 240,240,240, pixel 2.1, shown at
    3942 level 0.162, step 1, values float32 
    3943 Opened PflA_new.mrc copy as #6, grid size 240,240,240, pixel 2.1, shown at
    3944 level 0.162, step 1, values float32 
    3945 Opened PflA_new.mrc copy as #7, grid size 240,240,240, pixel 2.1, shown at
    3946 level 0.162, step 1, values float32 
    3947 Opened PflA_new.mrc copy as #8, grid size 240,240,240, pixel 2.1, shown at
    3948 level 0.162, step 1, values float32 
    3949 Opened PflA_new.mrc copy as #9, grid size 240,240,240, pixel 2.1, shown at
    3950 level 0.162, step 1, values float32 
    3951 Opened PflA_new.mrc copy as #10, grid size 240,240,240, pixel 2.1, shown at
    3952 level 0.162, step 1, values float32 
    3953 Opened PflA_new.mrc copy as #11, grid size 240,240,240, pixel 2.1, shown at
    3954 level 0.162, step 1, values float32 
    3955 Opened PflA_new.mrc copy as #12, grid size 240,240,240, pixel 2.1, shown at
    3956 level 0.162, step 1, values float32 
    3957 Opened PflA_new.mrc copy as #13, grid size 240,240,240, pixel 2.1, shown at
    3958 level 0.162, step 1, values float32 
    3959 Opened PflA_new.mrc copy as #14, grid size 240,240,240, pixel 2.1, shown at
    3960 level 0.162, step 1, values float32 
    3961 Opened PflA_new.mrc copy as #15, grid size 240,240,240, pixel 2.1, shown at
    3962 level 0.162, step 1, values float32 
    3963 Opened PflA_new.mrc copy as #17, grid size 240,240,240, pixel 2.1, shown at
    3964 level 0.162, step 1, values float32 
    3965 Opened PflA_new.mrc copy as #18, grid size 240,240,240, pixel 2.1, shown at
    3966 level 0.162, step 1, values float32 
    3967 Opened PflA_new.mrc copy as #19, grid size 240,240,240, pixel 2.1, shown at
    3968 level 0.162, step 1, values float32 
    3969 Opened Unknown_near_PflA.mrc copy as #20, grid size 240,240,240, pixel 2.1,
    3970 shown at level 0.15, step 1, values float32 
    3971 Opened Unknown_near_PflA.mrc copy as #21, grid size 240,240,240, pixel 2.1,
    3972 shown at level 0.127, step 1, values float32 
    3973 Opened Unknown_near_PflA.mrc copy as #22, grid size 240,240,240, pixel 2.1,
    3974 shown at level 0.127, step 1, values float32 
    3975 Opened Unknown_near_PflA.mrc copy as #23, grid size 240,240,240, pixel 2.1,
    3976 shown at level 0.127, step 1, values float32 
    3977 Opened Unknown_near_PflA.mrc copy as #24, grid size 240,240,240, pixel 2.1,
    3978 shown at level 0.127, step 1, values float32 
    3979 Opened Unknown_near_PflA.mrc copy as #25, grid size 240,240,240, pixel 2.1,
    3980 shown at level 0.127, step 1, values float32 
    3981 Opened Unknown_near_PflA.mrc copy as #26, grid size 240,240,240, pixel 2.1,
    3982 shown at level 0.127, step 1, values float32 
    3983 Opened Unknown_near_PflA.mrc copy as #27, grid size 240,240,240, pixel 2.1,
    3984 shown at level 0.127, step 1, values float32 
    3985 Opened Unknown_near_PflA.mrc copy as #28, grid size 240,240,240, pixel 2.1,
    3986 shown at level 0.127, step 1, values float32 
    3987 Opened Unknown_near_PflA.mrc copy as #29, grid size 240,240,240, pixel 2.1,
    3988 shown at level 0.127, step 1, values float32 
    3989 Opened Unknown_near_PflA.mrc copy as #30, grid size 240,240,240, pixel 2.1,
    3990 shown at level 0.127, step 1, values float32 
    3991 Opened Unknown_near_PflA.mrc copy as #31, grid size 240,240,240, pixel 2.1,
    3992 shown at level 0.127, step 1, values float32 
    3993 Opened Unknown_near_PflA.mrc copy as #32, grid size 240,240,240, pixel 2.1,
    3994 shown at level 0.127, step 1, values float32 
    3995 Opened Unknown_near_PflA.mrc copy as #33, grid size 240,240,240, pixel 2.1,
    3996 shown at level 0.127, step 1, values float32 
    3997 Opened Unknown_near_PflA.mrc copy as #34, grid size 240,240,240, pixel 2.1,
    3998 shown at level 0.127, step 1, values float32 
    3999 Opened Unknown_near_PflA.mrc copy as #35, grid size 240,240,240, pixel 2.1,
    4000 shown at level 0.127, step 1, values float32 
    4001 Opened Unknown_near_PflA.mrc copy as #36, grid size 240,240,240, pixel 2.1,
    4002 shown at level 0.127, step 1, values float32 
    4003 Opened Unknown_near_PflA.mrc copy as #37, grid size 240,240,240, pixel 2.1,
    4004 shown at level 0.127, step 1, values float32 
    4005 Opened PflB_new.mrc copy as #38, grid size 240,240,240, pixel 2.1, shown at
    4006 level 0.0467, step 1, values float32 
    4007 Opened PflB_new.mrc copy as #39, grid size 240,240,240, pixel 2.1, shown at
    4008 level 0.0467, step 1, values float32 
    4009 Opened PflB_new.mrc copy as #40, grid size 240,240,240, pixel 2.1, shown at
    4010 level 0.0467, step 1, values float32 
    4011 Opened PflB_new.mrc copy as #41, grid size 240,240,240, pixel 2.1, shown at
    4012 level 0.0467, step 1, values float32 
    4013 Opened PflB_new.mrc copy as #42, grid size 240,240,240, pixel 2.1, shown at
    4014 level 0.0467, step 1, values float32 
    4015 Opened PflB_new.mrc copy as #43, grid size 240,240,240, pixel 2.1, shown at
    4016 level 0.0467, step 1, values float32 
    4017 Opened PflB_new.mrc copy as #44, grid size 240,240,240, pixel 2.1, shown at
    4018 level 0.0467, step 1, values float32 
    4019 Opened PflB_new.mrc copy as #45, grid size 240,240,240, pixel 2.1, shown at
    4020 level 0.0467, step 1, values float32 
    4021 Opened PflB_new.mrc copy as #46, grid size 240,240,240, pixel 2.1, shown at
    4022 level 0.0467, step 1, values float32 
    4023 Opened PflB_new.mrc copy as #47, grid size 240,240,240, pixel 2.1, shown at
    4024 level 0.0467, step 1, values float32 
    4025 Opened PflB_new.mrc copy as #48, grid size 240,240,240, pixel 2.1, shown at
    4026 level 0.0467, step 1, values float32 
    4027 Opened PflB_new.mrc copy as #49, grid size 240,240,240, pixel 2.1, shown at
    4028 level 0.0467, step 1, values float32 
    4029 Opened PflB_new.mrc copy as #50, grid size 240,240,240, pixel 2.1, shown at
    4030 level 0.0467, step 1, values float32 
    4031 Opened PflB_new.mrc copy as #51, grid size 240,240,240, pixel 2.1, shown at
    4032 level 0.0467, step 1, values float32 
    4033 Opened PflB_new.mrc copy as #54, grid size 240,240,240, pixel 2.1, shown at
    4034 level 0.0467, step 1, values float32 
    4035 Opened PflB_new.mrc copy as #55, grid size 240,240,240, pixel 2.1, shown at
    4036 level 0.0467, step 1, values float32 
    4037 Opened PflB_new.mrc copy as #56, grid size 240,240,240, pixel 2.1, shown at
    4038 level 0.0467, step 1, values float32 
    4039 Opened PflB_new.mrc copy as #57, grid size 240,240,240, pixel 2.1, shown at
    4040 level 0.0467, step 1, values float32 
    4041 Opened Top-cage.mrc copy as #58, grid size 240,240,240, pixel 2.1, shown at
    4042 level 0.143, step 1, values float32 
    4043 Opened Top-cage.mrc copy as #59, grid size 240,240,240, pixel 2.1, shown at
    4044 level 0.143, step 1, values float32 
    4045 Opened Top-cage.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown at
    4046 level 0.143, step 1, values float32 
    4047 Opened Top-cage.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown at
    4048 level 0.143, step 1, values float32 
    4049 Opened Top-cage.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown at
    4050 level 0.143, step 1, values float32 
    4051 Opened Top-cage.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown at
    4052 level 0.143, step 1, values float32 
    4053 Opened Top-cage.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown at
    4054 level 0.143, step 1, values float32 
    4055 Opened Top-cage.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown at
    4056 level 0.143, step 1, values float32 
    4057 Opened Top-cage.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown at
    4058 level 0.143, step 1, values float32 
    4059 Opened Top-cage.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown at
    4060 level 0.143, step 1, values float32 
    4061 Opened Top-cage.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown at
    4062 level 0.143, step 1, values float32 
    4063 Opened Top-cage.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown at
    4064 level 0.143, step 1, values float32 
    4065 Opened Top-cage.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown at
    4066 level 0.143, step 1, values float32 
    4067 Opened Top-cage.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown at
    4068 level 0.143, step 1, values float32 
    4069 Opened Top-cage.mrc copy as #86, grid size 240,240,240, pixel 2.1, shown at
    4070 level 0.143, step 1, values float32 
    4071 Opened Top-cage.mrc copy as #121, grid size 240,240,240, pixel 2.1, shown at
    4072 level 0.143, step 1, values float32 
    4073 Opened Top-cage.mrc copy as #122, grid size 240,240,240, pixel 2.1, shown at
    4074 level 0.143, step 1, values float32 
    4075 Opened Top-cage.mrc copy as #123, grid size 240,240,240, pixel 2.1, shown at
    4076 level 0.143, step 1, values float32 
    4077 Opened MotB_new.mrc copy as #124, grid size 240,240,240, pixel 2.1, shown at
    4078 level 0.0995, step 1, values float32 
    4079 Opened MotB_new.mrc copy as #125, grid size 240,240,240, pixel 2.1, shown at
    4080 level 0.0995, step 1, values float32 
    4081 Opened MotB_new.mrc copy as #126, grid size 240,240,240, pixel 2.1, shown at
    4082 level 0.0995, step 1, values float32 
    4083 Opened MotB_new.mrc copy as #127, grid size 240,240,240, pixel 2.1, shown at
    4084 level 0.0995, step 1, values float32 
    4085 Opened MotB_new.mrc copy as #128, grid size 240,240,240, pixel 2.1, shown at
    4086 level 0.0995, step 1, values float32 
    4087 Opened MotB_new.mrc copy as #129, grid size 240,240,240, pixel 2.1, shown at
    4088 level 0.0995, step 1, values float32 
    4089 Opened MotB_new.mrc copy as #130, grid size 240,240,240, pixel 2.1, shown at
    4090 level 0.0995, step 1, values float32 
    4091 Opened MotB_new.mrc copy as #131, grid size 240,240,240, pixel 2.1, shown at
    4092 level 0.0995, step 1, values float32 
    4093 Opened MotB_new.mrc copy as #132, grid size 240,240,240, pixel 2.1, shown at
    4094 level 0.0995, step 1, values float32 
    4095 Opened MotB_new.mrc copy as #133, grid size 240,240,240, pixel 2.1, shown at
    4096 level 0.0995, step 1, values float32 
    4097 Opened MotB_new.mrc copy as #134, grid size 240,240,240, pixel 2.1, shown at
    4098 level 0.0995, step 1, values float32 
    4099 Opened MotB_new.mrc copy as #135, grid size 240,240,240, pixel 2.1, shown at
    4100 level 0.0995, step 1, values float32 
    4101 Opened MotB_new.mrc copy as #136, grid size 240,240,240, pixel 2.1, shown at
    4102 level 0.0995, step 1, values float32 
    4103 Opened MotB_new.mrc copy as #137, grid size 240,240,240, pixel 2.1, shown at
    4104 level 0.0995, step 1, values float32 
    4105 Opened MotB_new.mrc copy as #138, grid size 240,240,240, pixel 2.1, shown at
    4106 level 0.0995, step 1, values float32 
    4107 Opened MotB_new.mrc copy as #139, grid size 240,240,240, pixel 2.1, shown at
    4108 level 0.0995, step 1, values float32 
    4109 Opened MotB_new.mrc copy as #140, grid size 240,240,240, pixel 2.1, shown at
    4110 level 0.0995, step 1, values float32 
    4111 Opened MotB_new.mrc copy as #141, grid size 240,240,240, pixel 2.1, shown at
    4112 level 0.0995, step 1, values float32 
    4113 Opened volume sum as #144, grid size 642,583,278, pixel 2.1, shown at level
    4114 0.162, step 1, values float32 
    4115 Opened FlgY-with-joints.mrc copy as #143, grid size 220,220,220, pixel 4.3,
    4116 shown at level 2.81, step 1, values float32 
    4117 Opened FlgY-with-joints.mrc copy as #145, grid size 220,220,220, pixel 4.3,
    4118 shown at level 2.81, step 1, values float32 
    4119 Opened PilM-region.mrc gaussian copy as #146, grid size 160,160,200, pixel
    4120 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    4121 Opened PilM-region.mrc gaussian copy as #147, grid size 160,160,200, pixel
    4122 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    4123 Opened PilM-region.mrc gaussian copy as #148, grid size 160,160,200, pixel
    4124 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    4125 Opened PilM-region.mrc gaussian copy as #149, grid size 160,160,200, pixel
    4126 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    4127 Opened PilM-region.mrc gaussian copy as #150, grid size 160,160,200, pixel
    4128 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    4129 Opened PilM-region.mrc gaussian copy as #151, grid size 160,160,200, pixel
    4130 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    4131 Opened PilM-region.mrc gaussian copy as #152, grid size 160,160,200, pixel
    4132 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    4133 Opened PilM-region.mrc gaussian copy as #153, grid size 160,160,200, pixel
    4134 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    4135 Opened PilM-region.mrc gaussian copy as #154, grid size 160,160,200, pixel
    4136 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    4137 Opened PilM-region.mrc gaussian copy as #155, grid size 160,160,200, pixel
    4138 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    4139 Opened PilM-region.mrc gaussian copy as #156, grid size 160,160,200, pixel
    4140 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    4141 Opened PilM-region.mrc gaussian copy as #157, grid size 160,160,200, pixel
    4142 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    4143 Opened PilM-region.mrc gaussian copy as #158, grid size 160,160,200, pixel
    4144 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    4145 Opened PilM-region.mrc gaussian copy as #159, grid size 160,160,200, pixel
    4146 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    4147 Opened PilM-region.mrc gaussian copy as #160, grid size 160,160,200, pixel
    4148 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    4149 Opened PilM-region.mrc gaussian copy as #161, grid size 160,160,200, pixel
    4150 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    4151 Opened PilM-region.mrc gaussian copy as #162, grid size 160,160,200, pixel
    4152 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    4153 Opened PilM-region.mrc gaussian copy as #163, grid size 160,160,200, pixel
    4154 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    4155 Opened PilM-region.mrc gaussian copy as #164, grid size 160,160,200, pixel
    4156 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    4157 Opened 1x_Cage-units.mrc as #89, grid size 240,240,240, pixel 2.1, shown at
    4158 level 0.143, step 1, values float32 
    4159 Opened PilNO_PL-ring.mrc as #95, grid size 120,120,120, pixel 8.59, shown at
    4160 level 6.53e-05, step 1, values float32 
    4161 Opened New_PL-ring.mrc as #96, grid size 240,240,240, pixel 4.3, shown at
    4162 level 0.0141, step 1, values float32 
    4163 Opened Outer-ring-near-PL.mrc as #97, grid size 240,240,240, pixel 4.3, shown
    4164 at level 0.0141, step 1, values float32 
    4165 Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
    4166 shown at level 0.0148, step 1, values float32 
    4167 Opened Hpwt-L0.08-rev.mrc as #142, grid size 240,240,240, pixel 4.3, shown at
    4168 level 0.0425, step 1, values float32 
    4169 Opened New_PL-ring.mrc gaussian as #165, grid size 240,240,240, pixel 4.3,
    4170 shown at level 0.0105, step 1, values float32 
    4171 Opened FlgY-with-joints.mrc copy as #173, grid size 220,220,220, pixel 4.3,
    4172 shown at level 2.81, step 1, values float32 
    4173 Opened Hp-C1-4.296A-msk.mrc as #174, grid size 220,220,220, pixel 4.3, shown
    4174 at level 0.0868, step 1, values float32 
    4175 opened ChimeraX session 
    4176 
    4177 The cached device pixel ratio value was stale on window expose. Please file a
    4178 QTBUG which explains how to reproduce. 
    4179 
    4180 > close session
    4181 
    4182 > open /Users/shoichitachiyama/Desktop/Chimera-Dec11_2024/Hp-C1-4.296A-msk.mrc
    4183 
    4184 Opened Hp-C1-4.296A-msk.mrc as #1, grid size 220,220,220, pixel 4.3, shown at
    4185 level 0.151, step 1, values float32 
    4186 
    4187 > volume #1 level 0.02312
    4188 
    4189 > volume #1 level 0.008419
    4190 
    4191 > volume #1 level 0.005152
    4192 
    4193 > ui tool show "Segment Map"
    4194 
    4195 Segmenting Hp-C1-4.296A-msk.mrc, density threshold 0.005152 
    4196 Showing 457 region surfaces 
    4197 17934 watershed regions, grouped to 457 regions 
    4198 Showing Hp-C1-4.296A-msk.seg - 457 regions, 457 surfaces 
    4199 Drag select of 24638, 24560, 37313 of 55572 triangles, 24529, 24661, 24663,
    4200 34868 of 47056 triangles, 24523, 37743 of 45972 triangles, 24649, 24678,
    4201 24634, 4034 of 38580 triangles, 24528, 24681, 24605, 24602, 31449 of 40636
    4202 triangles, 24677, 33004 of 41320 triangles, 24334, 24530, 24647, 32629 of
    4203 32716 triangles, 24621, 26333 of 35044 triangles, 24660, 24656, 24693, 24590,
    4204 24626, 24582, 36444 of 36824 triangles, 24126, 23903 of 29260 triangles,
    4205 24641, 9935 of 29812 triangles, 24579, 31722 of 32292 triangles, 24490, 24495,
    4206 25572 of 28600 triangles, 24673, 28368 of 28440 triangles, 24557, 24581,
    4207 24269, 24520, 5261 of 25348 triangles, 24324, 6 of 24896 triangles, 24651,
    4208 24586, 24082, 21451 of 28596 triangles, 24675, 30980 of 32432 triangles,
    4209 24549, 13178 of 27088 triangles, 24669, 1682 of 23744 triangles, 24694, 8344
    4210 of 26812 triangles, 24179, 24418, 25608 of 25756 triangles, 24050, 10157 of
    4211 25148 triangles, 24601, 5393 of 26152 triangles, 24534, 202 of 24276
    4212 triangles, 24600, 34 of 26064 triangles, 24482, 24577, 24688, 24684, 10848 of
    4213 24728 triangles, 24637, 18350 of 24824 triangles, 24076, 24604, 24689, 24683,
    4214 24655, 24821 of 25220 triangles, 24594, 3760 of 23800 triangles, 24680, 24646,
    4215 24521, 19056 of 22648 triangles, 24658, 614 of 21252 triangles, 24152, 2747 of
    4216 20828 triangles, 24526, 21218 of 23420 triangles, 24336, 323 of 20752
    4217 triangles, 24652, 24472, 9560 of 20488 triangles, 24619, 5642 of 22676
    4218 triangles, 24692, 10081 of 19764 triangles, 24288, 24691, 24566, 24398, 24695,
    4219 18692 of 20148 triangles, 24617, 24629, 989 of 19584 triangles, 24554, 5973 of
    4220 16800 triangles, 24627, 16181 of 16708 triangles, 24476, 24259, 7371 of 16148
    4221 triangles, 24576, 6716 of 19764 triangles, 24329, 2502 of 17328 triangles,
    4222 24653, 24140, 11891 of 16152 triangles, 24232, 15528 of 15976 triangles,
    4223 24265, 24671, 10670 of 15956 triangles, 24603, 24588, 1219 of 17320 triangles,
    4224 24299, 7867 of 16324 triangles, 24665, 24210, 24484, 14978 of 16848 triangles,
    4225 24130, 3344 of 15144 triangles, 24136, 9592 of 15196 triangles, 24431, 24363,
    4226 24648, 16157 of 16376 triangles, 22667, 11505 of 13856 triangles, 24589, 9505
    4227 of 14000 triangles, 24417, 15271 of 16264 triangles, 24609, 7359 of 16956
    4228 triangles, 24518, 14689 of 15232 triangles, 24049, 24209, 24538, 3109 of 12560
    4229 triangles, 24416, 7727 of 15380 triangles, 24093, 24222, 24262, 13160 of 13284
    4230 triangles, 22438, 9363 of 13116 triangles, 24147, 9024 of 13724 triangles,
    4231 24552, 10318 of 12548 triangles, 24399, 8152 of 13188 triangles, 24442, 24123,
    4232 11806 of 12376 triangles, 24286, 566 of 13040 triangles, 24112, 24359, 11332
    4233 of 12572 triangles, 24507, 6839 of 11816 triangles, 24682, 24376, 24131, 12913
    4234 of 12988 triangles, 24696, 10279 of 11768 triangles, 24411, 11958 of 12136
    4235 triangles, 24051, 11150 of 11996 triangles, 24461, 12398 of 12448 triangles,
    4236 24300, 24067, 24498, 11843 of 11888 triangles, 24555, 11982 of 12224
    4237 triangles, 24148, 24264, 7652 of 10676 triangles, 24276, 10656 of 11096
    4238 triangles, 24100, 24486, 6105 of 10544 triangles, 24290, 24311, 24077, 24483,
    4239 24491, 24407, 22523, 9883 of 10872 triangles, 23003, 24487, 23656, 24471, 5930
    4240 of 9836 triangles, 24516, 24139, 23426, 7371 of 8908 triangles, 24181, 1549 of
    4241 7796 triangles, 24447, 22950, 8202 of 9020 triangles, 24278, 24250, 24464, 4
    4242 of 6788 triangles, 24193, 24356, 23138, 851 of 6336 triangles, 22799, 23352,
    4243 831 of 5976 triangles, 24514, 22563, 23024, 23337, 1362 of 5656 triangles,
    4244 24553, 669 of 5764 triangles, 23158, 1712 of 4988 triangles, 22647, 20075,
    4245 1567 of 5072 triangles, 23786, 22800, 1142 of 4712 triangles, 1
    4246 Hp-C1-4.296A-msk.mrc 
    4247 
    4248 > hide #!1 models
    4249 
    4250 > select subtract #1
    4251 
    4252 172 models selected 
    4253 
    4254 > select add #2.30
    4255 
    4256 173 models selected 
    4257 
    4258 > select add #2.105
    4259 
    4260 174 models selected 
    4261 
    4262 > select add #2.403
    4263 
    4264 175 models selected 
    4265 
    4266 > select add #2.113
    4267 
    4268 176 models selected 
    4269 
    4270 > select add #2.48
    4271 
    4272 177 models selected 
    4273 
    4274 > select add #2.198
    4275 
    4276 178 models selected 
    4277 
    4278 > select add #2.67
    4279 
    4280 179 models selected 
    4281 
    4282 > select add #2.313
    4283 
    4284 180 models selected 
    4285 
    4286 > select add #2.169
    4287 
    4288 181 models selected 
    4289 
    4290 > select add #2.356
    4291 
    4292 182 models selected 
    4293 
    4294 > select add #2.110
    4295 
    4296 183 models selected 
    4297 
    4298 > select add #2.248
    4299 
    4300 184 models selected 
    4301 
    4302 > select add #2.119
    4303 
    4304 185 models selected 
    4305 
    4306 > select add #2.94
    4307 
    4308 186 models selected 
    4309 
    4310 > select add #2.382
    4311 
    4312 187 models selected 
    4313 
    4314 > select add #2.118
    4315 
    4316 188 models selected 
    4317 
    4318 > select add #2.125
    4319 
    4320 189 models selected 
    4321 
    4322 > select add #2.443
    4323 
    4324 190 models selected 
    4325 
    4326 > select add #2.269
    4327 
    4328 191 models selected 
    4329 
    4330 > select add #2.311
    4331 
    4332 192 models selected 
    4333 
    4334 > select add #2.320
    4335 
    4336 193 models selected 
    4337 
    4338 > select add #2.267
    4339 
    4340 194 models selected 
    4341 
    4342 > select add #2.331
    4343 
    4344 195 models selected 
    4345 
    4346 > select add #2.207
    4347 
    4348 196 models selected 
    4349 
    4350 > select add #2.181
    4351 
    4352 197 models selected 
    4353 
    4354 > select add #2.221
    4355 
    4356 198 models selected 
    4357 
    4358 > select add #2.308
    4359 
    4360 199 models selected 
    4361 
    4362 > select add #2.314
    4363 
    4364 200 models selected 
    4365 Drag select of 24613, 27 of 55436 triangles, 24606, 11466 of 31892 triangles,
    4366 24598, 24522, 24550, 24404, 4748 of 21872 triangles, 24224, 7596 of 21712
    4367 triangles, 24124, 3174 of 22112 triangles, 24622, 7230 of 18152 triangles,
    4368 24341, 3824 of 19724 triangles, 24261, 3639 of 17728 triangles, 24570, 24068,
    4369 6147 of 18756 triangles, 24481, 6693 of 21232 triangles, 24241, 2336 of 17984
    4370 triangles, 24475, 19491 of 19520 triangles, 24161, 4970 of 17368 triangles,
    4371 24318, 1530 of 19672 triangles, 24234, 1832 of 17496 triangles, 24378, 4485 of
    4372 14856 triangles, 24640, 24470, 22467, 2349 of 14348 triangles, 23932, 145 of
    4373 12660 triangles, 24187, 24129, 2524 of 10888 triangles, 24456, 1919 of 13652
    4374 triangles, 22471, 1021 of 11840 triangles, 22821, 4957 of 10728 triangles,
    4375 24349, 4476 of 11444 triangles, 24335, 1018 of 12380 triangles, 22804, 332 of
    4376 12340 triangles, 24572, 24666, 2398 of 12384 triangles, 24558, 24292, 2019 of
    4377 11300 triangles, 24326, 5246 of 10060 triangles, 24002, 737 of 7864 triangles,
    4378 23935, 9 of 7160 triangles, 24393, 4372 of 9524 triangles, 24672, 2249 of 9512
    4379 triangles, 24668, 24165, 24543, 7358 of 9132 triangles, 23912, 4043 of 5592
    4380 triangles, 24578, 24041, 24676, 23037, 5864 of 6072 triangles, 22990, 22512,
    4381 5250 of 5760 triangles, 22501, 24257, 4740 of 5064 triangles, 24391, 24040,
    4382 22421, 4903 of 5464 triangles, 24667, 22672, 4609 of 4652 triangles, 24285,
    4383 23723, 23917, 415 of 4364 triangles, 22592, 23065, 3753 of 3872 triangles,
    4384 23356, 24 of 3808 triangles, 20711, 19 of 3960 triangles, 23185, 3232 of 3260
    4385 triangles, 23978, 21602, 23826, 23162, 21874, 23055, 1295 of 2332 triangles,
    4386 21210, 2212 of 2240 triangles, 23402, 23979, 23762, 21466, 23395, 22970, 2106
    4387 of 2168 triangles, 21159, 22121, 23731, 23892, 1667 of 1980 triangles, 23746,
    4388 23743, 22169, 22959, 1536 of 1652 triangles, 181, 22114, 406, 874, 488 of 1348
    4389 triangles, 22215, 24018 
    4390 
    4391 > select add #2.279
    4392 
    4393 294 models selected 
    4394 
    4395 > select add #2.360
    4396 
    4397 295 models selected 
    4398 
    4399 > select add #2.228
    4400 
    4401 296 models selected 
    4402 
    4403 > select add #2.401
    4404 
    4405 297 models selected 
    4406 
    4407 > select add #2.323
    4408 
    4409 298 models selected 
    4410 Drag select of 24277, 5 of 12492 triangles, 24573, 6 of 10928 triangles,
    4411 24192, 11 of 6272 triangles 
    4412 
    4413 > select add #2.392
    4414 
    4415 302 models selected 
    4416 
    4417 > select add #2.410
    4418 
    4419 303 models selected 
    4420 
    4421 > select add #2.240
    4422 
    4423 304 models selected 
    4424 
    4425 > select add #2.247
    4426 
    4427 305 models selected 
    4428 
    4429 > select add #2.399
    4430 
    4431 306 models selected 
    4432 
    4433 > select add #2.229
    4434 
    4435 307 models selected 
    4436 
    4437 > select subtract #2.369
    4438 
    4439 306 models selected 
    4440 
    4441 > select add #2.235
    4442 
    4443 307 models selected 
    4444 
    4445 > select add #2.385
    4446 
    4447 308 models selected 
    4448 
    4449 > select add #2.340
    4450 
    4451 309 models selected 
    4452 
    4453 > select add #2.343
    4454 
    4455 310 models selected 
    4456 
    4457 > select add #2.390
    4458 
    4459 311 models selected 
    4460 
    4461 > select add #2.366
    4462 
    4463 312 models selected 
    4464 
    4465 > select add #2.412
    4466 
    4467 313 models selected 
    4468 
    4469 > select subtract #2.130
    4470 
    4471 312 models selected 
    4472 
    4473 > select clear
    4474 
    4475 Drag select of 24638, 53626 of 58216 triangles, 24560, 54988 of 55572
    4476 triangles, 24529, 41561 of 49176 triangles, 24661, 24663, 47029 of 47056
    4477 triangles, 24523, 24649, 24678, 42159 of 51000 triangles, 24528, 24681, 38581
    4478 of 45512 triangles, 24605, 40287 of 40532 triangles, 24602, 40292 of 40636
    4479 triangles, 24677, 24334, 31334 of 41080 triangles, 24597, 15 of 31868
    4480 triangles, 24530, 24647, 32538 of 32716 triangles, 24621, 24660, 37249 of
    4481 44624 triangles, 24656, 24693, 24590, 29164 of 33036 triangles, 24626, 24582,
    4482 36818 of 36824 triangles, 24547, 1951 of 27756 triangles, 24126, 24641, 1053
    4483 of 29812 triangles, 24579, 24490, 24495, 24673, 28157 of 28440 triangles,
    4484 24557, 27712 of 32384 triangles, 24581, 23062 of 26724 triangles, 24269, 31168
    4485 of 32232 triangles, 24639, 705 of 26012 triangles, 24324, 6530 of 24896
    4486 triangles, 24651, 32203 of 33976 triangles, 24586, 24082, 24675, 24549, 39 of
    4487 27088 triangles, 24694, 1179 of 26812 triangles, 24179, 24418, 24050, 1044 of
    4488 25148 triangles, 24601, 1393 of 26152 triangles, 24534, 22 of 24276 triangles,
    4489 24600, 8568 of 26064 triangles, 24482, 24712 of 25604 triangles, 24577, 24688,
    4490 25714 of 25960 triangles, 24684, 240 of 24728 triangles, 24616, 11319 of 25564
    4491 triangles, 24637, 24076, 26132 of 29592 triangles, 24604, 19886 of 23308
    4492 triangles, 24689, 22537 of 24428 triangles, 24683, 24655, 24594, 5189 of 23800
    4493 triangles, 24541, 1140 of 21380 triangles, 24680, 24646, 24568, 8206 of 22464
    4494 triangles, 24521, 17212 of 22648 triangles, 24615, 662 of 18792 triangles,
    4495 24658, 855 of 21252 triangles, 24152, 3392 of 20828 triangles, 24526, 24625,
    4496 6642 of 20968 triangles, 24330, 7827 of 19792 triangles, 24336, 2873 of 20752
    4497 triangles, 24652, 21128 of 22412 triangles, 24472, 120 of 20488 triangles,
    4498 24692, 19210 of 19764 triangles, 24473, 5505 of 19256 triangles, 24288, 24691,
    4499 24566, 24398, 24695, 24617, 24554, 3256 of 16800 triangles, 24627, 10651 of
    4500 16708 triangles, 24476, 24576, 28 of 19764 triangles, 24329, 1319 of 17328
    4501 triangles, 24044, 4003 of 16100 triangles, 24653, 24140, 14417 of 16152
    4502 triangles, 24232, 24265, 24671, 14162 of 15956 triangles, 24603, 8558 of 15428
    4503 triangles, 24588, 5236 of 17320 triangles, 24299, 346 of 16324 triangles,
    4504 24665, 24210, 24484, 24130, 1473 of 15144 triangles, 24136, 14471 of 15196
    4505 triangles, 24431, 24434, 444 of 15768 triangles, 24363, 24648, 12526 of 16376
    4506 triangles, 22667, 10251 of 13856 triangles, 24589, 9124 of 14000 triangles,
    4507 24417, 24518, 24049, 24209, 24538, 3232 of 12560 triangles, 24093, 24222,
    4508 24610, 4719 of 13772 triangles, 24262, 7999 of 13284 triangles, 22438, 11155
    4509 of 13116 triangles, 24147, 13656 of 13724 triangles, 24552, 10415 of 12548
    4510 triangles, 24399, 13010 of 13188 triangles, 24442, 12318 of 12796 triangles,
    4511 24123, 24286, 2335 of 13040 triangles, 24112, 24359, 24507, 11207 of 11816
    4512 triangles, 24682, 24376, 24131, 12964 of 12988 triangles, 24696, 9976 of 11768
    4513 triangles, 24411, 24051, 8833 of 11996 triangles, 24461, 12124 of 12448
    4514 triangles, 24300, 11486 of 11580 triangles, 24067, 7474 of 11968 triangles,
    4515 24498, 11886 of 11888 triangles, 24555, 12103 of 12224 triangles, 24148, 10441
    4516 of 11064 triangles, 24264, 7782 of 10676 triangles, 24276, 11077 of 11096
    4517 triangles, 24100, 7795 of 11468 triangles, 24486, 10387 of 10544 triangles,
    4518 24290, 24311, 24077, 7909 of 11344 triangles, 24483, 7348 of 11528 triangles,
    4519 24491, 24551, 30 of 8792 triangles, 24611, 3321 of 12560 triangles, 24407,
    4520 8095 of 11308 triangles, 22523, 10866 of 10872 triangles, 23003, 24487, 8410
    4521 of 9132 triangles, 23656, 8694 of 9504 triangles, 24471, 9269 of 9836
    4522 triangles, 24516, 24139, 8776 of 9312 triangles, 23426, 7771 of 8908
    4523 triangles, 24181, 2248 of 7796 triangles, 24447, 22950, 24278, 22965, 2715 of
    4524 7980 triangles, 24250, 24193, 24356, 23138, 1806 of 6336 triangles, 22799,
    4525 23352, 1895 of 5976 triangles, 24514, 22563, 23024, 23673, 822 of 5652
    4526 triangles, 23337, 1403 of 5656 triangles, 24553, 571 of 5764 triangles, 23158,
    4527 831 of 4988 triangles, 22647, 23786 
    4528 
    4529 > select add #2.181
    4530 
    4531 179 models selected 
    4532 
    4533 > select add #2.207
    4534 
    4535 180 models selected 
    4536 
    4537 > select add #2.311
    4538 
    4539 181 models selected 
    4540 
    4541 > select add #2.269
    4542 
    4543 182 models selected 
    4544 
    4545 > select add #2.308
    4546 
    4547 183 models selected 
    4548 
    4549 > select add #2.221
    4550 
    4551 184 models selected 
    4552 
    4553 > select add #2.78
    4554 
    4555 185 models selected 
    4556 
    4557 > select add #2.145
    4558 
    4559 186 models selected 
    4560 
    4561 > select add #2.68
    4562 
    4563 187 models selected 
    4564 
    4565 > select add #2.123
    4566 
    4567 188 models selected 
    4568 
    4569 > select add #2.15
    4570 
    4571 189 models selected 
    4572 
    4573 > select add #2.363
    4574 
    4575 190 models selected 
    4576 
    4577 > select add #2.403
    4578 
    4579 191 models selected 
    4580 
    4581 > select add #2.331
    4582 
    4583 192 models selected 
    4584 
    4585 > select add #2.267
    4586 
    4587 193 models selected 
    4588 
    4589 > select add #2.320
    4590 
    4591 194 models selected 
    4592 
    4593 > select add #2.237
    4594 
    4595 195 models selected 
    4596 
    4597 > select add #2.159
    4598 
    4599 196 models selected 
    4600 
    4601 > select add #2.393
    4602 
    4603 197 models selected 
    4604 
    4605 > select add #2.216
    4606 
    4607 198 models selected 
    4608 
    4609 > select add #2.398
    4610 
    4611 199 models selected 
    4612 
    4613 > select add #2.350
    4614 
    4615 200 models selected 
    4616 
    4617 > select add #2.364
    4618 
    4619 201 models selected 
    4620 
    4621 > select add #2.443
    4622 
    4623 202 models selected 
    4624 Grouped 202 regions 
    4625 
    4626 > select clear
    4627 
    4628 Drag select of 24598, 25442 of 28812 triangles, 24522, 32545 of 32668
    4629 triangles, 24550, 24404, 2167 of 21872 triangles, 24124, 141 of 22112
    4630 triangles, 24341, 1982 of 19724 triangles, 24261, 3508 of 17728 triangles,
    4631 24570, 24438 of 25068 triangles, 24481, 24 of 21232 triangles, 24241, 1592 of
    4632 17984 triangles, 24475, 19472 of 19520 triangles, 24318, 1759 of 19672
    4633 triangles, 24234, 1777 of 17496 triangles, 24378, 214 of 14856 triangles,
    4634 24640, 24470, 22467, 1776 of 14348 triangles, 24187, 13607 of 14156 triangles,
    4635 24129, 2607 of 10888 triangles, 24456, 186 of 13652 triangles, 24349, 1394 of
    4636 11444 triangles, 24572, 24666, 74 of 12384 triangles, 24558, 24672, 566 of
    4637 9512 triangles, 24668, 24165, 24543, 2536 of 9132 triangles, 23912, 320 of
    4638 5592 triangles, 24578, 24041, 24676, 23037, 2944 of 6072 triangles, 22990,
    4639 22512, 1504 of 5760 triangles, 22501, 24257, 2229 of 5064 triangles, 24391,
    4640 24040, 22421, 2878 of 5464 triangles, 24667, 22672, 3127 of 4652 triangles,
    4641 24285, 1606 of 4664 triangles, 23723, 22592, 23065, 1469 of 3872 triangles,
    4642 23185, 1046 of 3260 triangles, 23978, 21602, 23826, 23162, 1139 of 2800
    4643 triangles, 21874, 23055, 21210, 2212 of 2240 triangles, 23402, 23979, 23762,
    4644 1095 of 1972 triangles, 23395, 22970, 22121, 23731, 1163 of 1872 triangles,
    4645 23746, 23743, 22169, 22959, 1548 of 1652 triangles, 181, 22114, 406, 874, 955
    4646 of 1348 triangles, 21098, 593 of 1532 triangles, 22215, 24018 
    4647 
    4648 > select add #2.183
    4649 
    4650 73 models selected 
    4651 
    4652 > select add #2.285
    4653 
    4654 74 models selected 
    4655 
    4656 > select add #2.60
    4657 
    4658 75 models selected 
    4659 
    4660 > select add #2.158
    4661 
    4662 76 models selected 
    4663 
    4664 > select add #2.133
    4665 
    4666 77 models selected 
    4667 
    4668 > select add #2.114
    4669 
    4670 78 models selected 
    4671 
    4672 > select add #2.290
    4673 
    4674 79 models selected 
    4675 
    4676 > select add #2.345
    4677 
    4678 80 models selected 
    4679 
    4680 > select add #2.421
    4681 
    4682 81 models selected 
    4683 
    4684 > select add #2.361
    4685 
    4686 82 models selected 
    4687 
    4688 > select add #2.273
    4689 
    4690 83 models selected 
    4691 
    4692 > select add #2.353
    4693 
    4694 84 models selected 
    4695 
    4696 > select add #2.283
    4697 
    4698 85 models selected 
    4699 
    4700 > select add #2.298
    4701 
    4702 86 models selected 
    4703 
    4704 > select add #2.423
    4705 
    4706 87 models selected 
    4707 
    4708 > select add #2.362
    4709 
    4710 88 models selected 
    4711 
    4712 > select add #2.351
    4713 
    4714 89 models selected 
    4715 
    4716 > select add #2.417
    4717 
    4718 90 models selected 
    4719 
    4720 > select add #2.340
    4721 
    4722 91 models selected 
    4723 
    4724 > select add #2.385
    4725 
    4726 92 models selected 
    4727 
    4728 > select add #2.235
    4729 
    4730 93 models selected 
    4731 
    4732 > select add #2.229
    4733 
    4734 94 models selected 
    4735 
    4736 > select add #2.247
    4737 
    4738 95 models selected 
    4739 
    4740 > select add #2.240
    4741 
    4742 96 models selected 
    4743 
    4744 > select add #2.399
    4745 
    4746 97 models selected 
    4747 
    4748 > select add #2.410
    4749 
    4750 98 models selected 
    4751 
    4752 > select add #2.392
    4753 
    4754 99 models selected 
    4755 
    4756 > select add #2.323
    4757 
    4758 100 models selected 
    4759 
    4760 > select add #2.369
    4761 
    4762 101 models selected 
    4763 
    4764 > select add #2.228
    4765 
    4766 102 models selected 
    4767 
    4768 > select add #2.401
    4769 
    4770 103 models selected 
    4771 
    4772 > select add #2.360
    4773 
    4774 104 models selected 
    4775 
    4776 > select add #2.279
    4777 
    4778 105 models selected 
    4779 
    4780 > select add #2.412
    4781 
    4782 106 models selected 
    4783 
    4784 > select add #2.343
    4785 
    4786 107 models selected 
    4787 
    4788 > select add #2.390
    4789 
    4790 108 models selected 
    4791 
    4792 > select add #2.366
    4793 
    4794 109 models selected 
    4795 Grouped 109 regions 
    4796 
    4797 > select add #2.3
    4798 
    4799 2 models selected 
    4800 Grouped 2 regions 
    4801 
    4802 The cached device pixel ratio value was stale on window expose. Please file a
    4803 QTBUG which explains how to reproduce. 
    4804 
    4805 Opened Hp-C1-4.296A-msk_imasked as #3, grid size 220,220,220, pixel 4.3, shown
    4806 at step 1, values float32 
    4807 
    4808 The cached device pixel ratio value was stale on window expose. Please file a
    4809 QTBUG which explains how to reproduce. 
    4810 
    4811 Segmenting Hp-C1-4.296A-msk_imasked, density threshold 0.005152 
    4812 Showing 146 region surfaces 
    4813 6635 watershed regions, grouped to 146 regions 
    4814 Showing Hp-C1-4.seg - 146 regions, 146 surfaces 
    4815 
    4816 > select #2.4
    4817 
    4818 1 model selected 
    4819 
    4820 > select add #2.21
    4821 
    4822 2 models selected 
    4823 
    4824 > select add #2.27
    4825 
    4826 3 models selected 
    4827 
    4828 > select add #2.2
    4829 
    4830 4 models selected 
    4831 
    4832 > select add #2.17
    4833 
    4834 5 models selected 
    4835 
    4836 > select add #2.5
    4837 
    4838 6 models selected 
    4839 
    4840 > select add #2.11
    4841 
    4842 7 models selected 
    4843 
    4844 > select subtract #2.11
    4845 
    4846 6 models selected 
    4847 
    4848 > select add #2.3
    4849 
    4850 7 models selected 
    4851 
    4852 > select add #2.11
    4853 
    4854 8 models selected 
    4855 
    4856 > select add #2.39
    4857 
    4858 9 models selected 
    4859 
    4860 > select add #2.109
    4861 
    4862 10 models selected 
    4863 
    4864 > select add #2.23
    4865 
    4866 11 models selected 
    4867 
    4868 > select add #2.31
    4869 
    4870 12 models selected 
    4871 
    4872 > select add #2.8
    4873 
    4874 13 models selected 
    4875 
    4876 > select add #2.19
    4877 
    4878 14 models selected 
    4879 
    4880 > select add #2.10
    4881 
    4882 15 models selected 
    4883 
    4884 > select add #2.7
    4885 
    4886 16 models selected 
    4887 
    4888 > select add #2.1
    4889 
    4890 17 models selected 
    4891 
    4892 > select add #2.13
    4893 
    4894 18 models selected 
    4895 
    4896 > select add #2.25
    4897 
    4898 19 models selected 
    4899 
    4900 > select add #2.20
    4901 
    4902 20 models selected 
    4903 
    4904 > select add #2.35
    4905 
    4906 21 models selected 
    4907 
    4908 > select add #2.15
    4909 
    4910 22 models selected 
    4911 
    4912 > select add #2.14
    4913 
    4914 23 models selected 
    4915 
    4916 > select add #2.18
    4917 
    4918 24 models selected 
    4919 
    4920 > select add #2.6
    4921 
    4922 25 models selected 
    4923 
    4924 > select add #2.9
    4925 
    4926 26 models selected 
    4927 
    4928 > select add #2.38
    4929 
    4930 27 models selected 
    4931 
    4932 > select add #2.22
    4933 
    4934 28 models selected 
    4935 
    4936 > select add #2.34
    4937 
    4938 29 models selected 
    4939 
    4940 > select add #2.59
    4941 
    4942 30 models selected 
    4943 
    4944 > select add #2.29
    4945 
    4946 31 models selected 
    4947 
    4948 > select add #2.16
    4949 
    4950 32 models selected 
    4951 
    4952 > hide #!3 models
    4953 
    4954 > select add #2.36
    4955 
    4956 33 models selected 
    4957 
    4958 > select add #2.62
    4959 
    4960 34 models selected 
    4961 
    4962 > select add #2.142
    4963 
    4964 35 models selected 
    4965 
    4966 > select add #2.143
    4967 
    4968 36 models selected 
    4969 
    4970 > select add #2.141
    4971 
    4972 37 models selected 
    4973 
    4974 > select add #2.24
    4975 
    4976 38 models selected 
    4977 
    4978 > select add #2.30
    4979 
    4980 39 models selected 
    4981 
    4982 > select add #2.37
    4983 
    4984 40 models selected 
    4985 
    4986 > select add #2.33
    4987 
    4988 41 models selected 
    4989 
    4990 > select add #2.26
    4991 
    4992 42 models selected 
    4993 
    4994 > select add #2.55
    4995 
    4996 43 models selected 
    4997 
    4998 > select add #2.52
    4999 
    5000 44 models selected 
    5001 
    5002 > select add #2.82
    5003 
    5004 45 models selected 
    5005 
    5006 > select add #2.28
    5007 
    5008 46 models selected 
    5009 
    5010 > select add #2.84
    5011 
    5012 47 models selected 
    5013 
    5014 > select add #2.56
    5015 
    5016 48 models selected 
    5017 
    5018 > select add #2.49
    5019 
    5020 49 models selected 
    5021 
    5022 > select add #2.98
    5023 
    5024 50 models selected 
    5025 
    5026 > select add #2.66
    5027 
    5028 51 models selected 
    5029 
    5030 > select add #2.105
    5031 
    5032 52 models selected 
    5033 
    5034 > select add #2.92
    5035 
    5036 53 models selected 
    5037 
    5038 > select add #2.103
    5039 
    5040 54 models selected 
    5041 
    5042 > select add #2.88
    5043 
    5044 55 models selected 
    5045 
    5046 > select add #2.100
    5047 
    5048 56 models selected 
    5049 
    5050 > select add #2.67
    5051 
    5052 57 models selected 
    5053 
    5054 > select add #2.97
    5055 
    5056 58 models selected 
    5057 
    5058 > select add #2.93
    5059 
    5060 59 models selected 
    5061 
    5062 > select add #2.71
    5063 
    5064 60 models selected 
    5065 
    5066 > select add #2.104
    5067 
    5068 61 models selected 
    5069 
    5070 > select add #2.99
    5071 
    5072 62 models selected 
    5073 
    5074 > select add #2.94
    5075 
    5076 63 models selected 
    5077 
    5078 > select add #2.68
    5079 
    5080 64 models selected 
    5081 
    5082 > select add #2.69
    5083 
    5084 65 models selected 
    5085 
    5086 > select add #2.129
    5087 
    5088 66 models selected 
    5089 
    5090 > select add #2.90
    5091 
    5092 67 models selected 
    5093 
    5094 > select add #2.101
    5095 
    5096 68 models selected 
    5097 
    5098 > select add #2.127
    5099 
    5100 69 models selected 
    5101 
    5102 > select add #2.12
    5103 
    5104 70 models selected 
    5105 
    5106 > select add #2.65
    5107 
    5108 71 models selected 
    5109 
    5110 > select add #2.63
    5111 
    5112 72 models selected 
    5113 
    5114 > select add #2.108
    5115 
    5116 73 models selected 
    5117 
    5118 > select add #2.115
    5119 
    5120 74 models selected 
    5121 
    5122 > select add #2.135
    5123 
    5124 75 models selected 
    5125 
    5126 > select add #2.118
    5127 
    5128 76 models selected 
    5129 
    5130 > select add #2.144
    5131 
    5132 77 models selected 
    5133 
    5134 > select add #2.146
    5135 
    5136 78 models selected 
    5137 Grouped 78 regions 
    5138 
    5139 > select add #2.32
    5140 
    5141 2 models selected 
    5142 
    5143 > select add #2.138
    5144 
    5145 3 models selected 
    5146 
    5147 > select add #2.134
    5148 
    5149 4 models selected 
    5150 
    5151 > select add #2.122
    5152 
    5153 5 models selected 
    5154 
    5155 > select add #2.137
    5156 
    5157 6 models selected 
    5158 
    5159 > select add #2.136
    5160 
    5161 7 models selected 
    5162 
    5163 > select add #2.132
    5164 
    5165 8 models selected 
    5166 
    5167 > select add #2.128
    5168 
    5169 9 models selected 
    5170 
    5171 > select add #2.139
    5172 
    5173 10 models selected 
    5174 
    5175 > select add #2.123
    5176 
    5177 11 models selected 
    5178 
    5179 > select add #2.133
    5180 
    5181 12 models selected 
    5182 
    5183 > select add #2.125
    5184 
    5185 13 models selected 
    5186 
    5187 > select add #2.140
    5188 
    5189 14 models selected 
    5190 
    5191 > select add #2.119
    5192 
    5193 15 models selected 
    5194 
    5195 > select add #2.131
    5196 
    5197 16 models selected 
    5198 
    5199 > select add #2.96
    5200 
    5201 17 models selected 
    5202 
    5203 > select add #2.126
    5204 
    5205 18 models selected 
    5206 
    5207 > select add #2.107
    5208 
    5209 19 models selected 
    5210 Grouped 19 regions 
    5211 Opened Hp-C1-4_imasked as #4, grid size 220,220,220, pixel 4.3, shown at step
    5212 1, values float32 
    5213 Segmenting Hp-C1-4_imasked, density threshold 0.005152 
    5214 Showing 50 region surfaces 
    5215 884 watershed regions, grouped to 50 regions 
    5216 Showing Hp-C1-4_imasked.seg - 50 regions, 50 surfaces 
    5217 
    5218 > hide #!2 models
    5219 
    5220 > hide #!4 models
    5221 
    5222 > show #!2 models
    5223 
    5224 > select #2.1
    5225 
    5226 1 model selected 
    5227 
    5228 > select add #2.17
    5229 
    5230 2 models selected 
    5231 
    5232 > select add #2.4
    5233 
    5234 3 models selected 
    5235 
    5236 > select add #2.3
    5237 
    5238 4 models selected 
    5239 
    5240 > select add #2.15
    5241 
    5242 5 models selected 
    5243 
    5244 > select add #2.11
    5245 
    5246 6 models selected 
    5247 
    5248 > select add #2.12
    5249 
    5250 7 models selected 
    5251 
    5252 > select add #2.5
    5253 
    5254 8 models selected 
    5255 
    5256 > select add #2.16
    5257 
    5258 9 models selected 
    5259 
    5260 > select add #2.2
    5261 
    5262 10 models selected 
    5263 
    5264 > select add #2.7
    5265 
    5266 11 models selected 
    5267 
    5268 > select add #2.10
    5269 
    5270 12 models selected 
    5271 
    5272 > select add #2.13
    5273 
    5274 13 models selected 
    5275 
    5276 > select add #2.8
    5277 
    5278 14 models selected 
    5279 
    5280 > select add #2.14
    5281 
    5282 15 models selected 
    5283 
    5284 > show #!3 models
    5285 
    5286 Segmenting Hp-C1-4.296A-msk_imasked, density threshold 0.005152 
    5287 Showing 146 region surfaces 
    5288 6635 watershed regions, grouped to 146 regions 
    5289 Showing Hp-C1-4.seg - 146 regions, 146 surfaces 
    5290 
    5291 > close #4
    5292 
    5293 > select #2.63
    5294 
    5295 1 model selected 
    5296 
    5297 > select add #2.12
    5298 
    5299 2 models selected 
    5300 
    5301 > select add #2.65
    5302 
    5303 3 models selected 
    5304 
    5305 > select #2.20
    5306 
    5307 1 model selected 
    5308 
    5309 > select add #2.14
    5310 
    5311 2 models selected 
    5312 
    5313 > select add #2.15
    5314 
    5315 3 models selected 
    5316 
    5317 > select add #2.18
    5318 
    5319 4 models selected 
    5320 
    5321 > select add #2.6
    5322 
    5323 5 models selected 
    5324 
    5325 > select add #2.9
    5326 
    5327 6 models selected 
    5328 
    5329 > select add #2.38
    5330 
    5331 7 models selected 
    5332 
    5333 > select add #2.22
    5334 
    5335 8 models selected 
    5336 Drag select of 9185, 21 of 34272 triangles, 9174, 43 of 35160 triangles 
    5337 
    5338 > select add #2.59
    5339 
    5340 9 models selected 
    5341 
    5342 > select add #2.29
    5343 
    5344 10 models selected 
    5345 
    5346 > select add #2.16
    5347 
    5348 11 models selected 
    5349 
    5350 > select add #2.4
    5351 
    5352 12 models selected 
    5353 
    5354 > select add #2.21
    5355 
    5356 13 models selected 
    5357 
    5358 > select add #2.27
    5359 
    5360 14 models selected 
    5361 
    5362 > select add #2.2
    5363 
    5364 15 models selected 
    5365 
    5366 > select add #2.17
    5367 
    5368 16 models selected 
    5369 
    5370 > select add #2.5
    5371 
    5372 17 models selected 
    5373 
    5374 > select add #2.11
    5375 
    5376 18 models selected 
    5377 
    5378 > select add #2.3
    5379 
    5380 19 models selected 
    5381 
    5382 > select add #2.39
    5383 
    5384 20 models selected 
    5385 
    5386 > select add #2.109
    5387 
    5388 21 models selected 
    5389 
    5390 > select add #2.31
    5391 
    5392 22 models selected 
    5393 
    5394 > select add #2.8
    5395 
    5396 23 models selected 
    5397 
    5398 > select add #2.19
    5399 
    5400 24 models selected 
    5401 
    5402 > select add #2.10
    5403 
    5404 25 models selected 
    5405 
    5406 > select add #2.7
    5407 
    5408 26 models selected 
    5409 
    5410 > select add #2.1
    5411 
    5412 27 models selected 
    5413 
    5414 > select add #2.13
    5415 
    5416 28 models selected 
    5417 
    5418 > select add #2.25
    5419 
    5420 29 models selected 
    5421 
    5422 > select add #2.35
    5423 
    5424 30 models selected 
    5425 
    5426 > select subtract #2.20
    5427 
    5428 29 models selected 
    5429 
    5430 > select add #2.20
    5431 
    5432 30 models selected 
    5433 
    5434 > select subtract #2.14
    5435 
    5436 29 models selected 
    5437 
    5438 > select add #2.14
    5439 
    5440 30 models selected 
    5441 
    5442 > hide #!3 models
    5443 
    5444 > select add #2.23
    5445 
    5446 31 models selected 
    5447 
    5448 > select add #2.28
    5449 
    5450 32 models selected 
    5451 
    5452 > select add #2.52
    5453 
    5454 33 models selected 
    5455 
    5456 > select add #2.55
    5457 
    5458 34 models selected 
    5459 
    5460 > select add #2.26
    5461 
    5462 35 models selected 
    5463 
    5464 > select add #2.33
    5465 
    5466 36 models selected 
    5467 
    5468 > select add #2.22
    5469 
    5470 37 models selected 
    5471 
    5472 > select add #2.30
    5473 
    5474 38 models selected 
    5475 
    5476 > select add #2.24
    5477 
    5478 39 models selected 
    5479 
    5480 > select add #2.36
    5481 
    5482 40 models selected 
    5483 
    5484 > select add #2.62
    5485 
    5486 41 models selected 
    5487 
    5488 > select add #2.103
    5489 
    5490 42 models selected 
    5491 
    5492 > select add #2.88
    5493 
    5494 43 models selected 
    5495 
    5496 > select add #2.100
    5497 
    5498 44 models selected 
    5499 
    5500 > select add #2.67
    5501 
    5502 45 models selected 
    5503 
    5504 > select add #2.97
    5505 
    5506 46 models selected 
    5507 
    5508 > select add #2.93
    5509 
    5510 47 models selected 
    5511 
    5512 > select add #2.37
    5513 
    5514 48 models selected 
    5515 
    5516 > select add #2.71
    5517 
    5518 49 models selected 
    5519 
    5520 > select add #2.104
    5521 
    5522 50 models selected 
    5523 
    5524 > select add #2.99
    5525 
    5526 51 models selected 
    5527 
    5528 > select add #2.94
    5529 
    5530 52 models selected 
    5531 
    5532 > select add #2.68
    5533 
    5534 53 models selected 
    5535 
    5536 > select subtract #2.68
    5537 
    5538 52 models selected 
    5539 
    5540 The cached device pixel ratio value was stale on window expose. Please file a
    5541 QTBUG which explains how to reproduce. 
    5542 
    5543 > select add #2.69
    5544 
    5545 53 models selected 
    5546 
    5547 > select add #2.68
    5548 
    5549 54 models selected 
    5550 
    5551 > select add #2.12
    5552 
    5553 55 models selected 
    5554 
    5555 > select add #2.115
    5556 
    5557 56 models selected 
    5558 
    5559 > select add #2.135
    5560 
    5561 57 models selected 
    5562 
    5563 > select add #2.108
    5564 
    5565 58 models selected 
    5566 
    5567 > select add #2.63
    5568 
    5569 59 models selected 
    5570 
    5571 > select add #2.65
    5572 
    5573 60 models selected 
    5574 
    5575 > select add #2.101
    5576 
    5577 61 models selected 
    5578 
    5579 > select add #2.105
    5580 
    5581 62 models selected 
    5582 
    5583 > select add #2.92
    5584 
    5585 63 models selected 
    5586 
    5587 > select add #2.66
    5588 
    5589 64 models selected 
    5590 
    5591 > select add #2.127
    5592 
    5593 65 models selected 
    5594 
    5595 > select add #2.90
    5596 
    5597 66 models selected 
    5598 
    5599 > select add #2.98
    5600 
    5601 67 models selected 
    5602 
    5603 > select add #2.49
    5604 
    5605 68 models selected 
    5606 
    5607 > select add #2.56
    5608 
    5609 69 models selected 
    5610 
    5611 > select add #2.84
    5612 
    5613 70 models selected 
    5614 
    5615 > select subtract #2.84
    5616 
    5617 69 models selected 
    5618 
    5619 > select add #2.84
    5620 
    5621 70 models selected 
    5622 
    5623 > select add #2.82
    5624 
    5625 71 models selected 
    5626 
    5627 > select add #2.129
    5628 
    5629 72 models selected 
    5630 
    5631 > select add #2.118
    5632 
    5633 73 models selected 
    5634 
    5635 > select add #2.143
    5636 
    5637 74 models selected 
    5638 
    5639 > select add #2.142
    5640 
    5641 75 models selected 
    5642 
    5643 > select add #2.141
    5644 
    5645 76 models selected 
    5646 
    5647 > select add #2.144
    5648 
    5649 77 models selected 
    5650 
    5651 > select add #2.146
    5652 
    5653 78 models selected 
    5654 
    5655 > select add #2.32
    5656 
    5657 79 models selected 
    5658 
    5659 > select add #2.122
    5660 
    5661 80 models selected 
    5662 
    5663 > select add #2.137
    5664 
    5665 81 models selected 
    5666 
    5667 > select add #2.136
    5668 
    5669 82 models selected 
    5670 
    5671 > select add #2.132
    5672 
    5673 83 models selected 
    5674 
    5675 > select add #2.128
    5676 
    5677 84 models selected 
    5678 
    5679 > select add #2.139
    5680 
    5681 85 models selected 
    5682 
    5683 > select add #2.123
    5684 
    5685 86 models selected 
    5686 
    5687 > select add #2.133
    5688 
    5689 87 models selected 
    5690 
    5691 > select add #2.125
    5692 
    5693 88 models selected 
    5694 
    5695 > select add #2.138
    5696 
    5697 89 models selected 
    5698 
    5699 > select add #2.134
    5700 
    5701 90 models selected 
    5702 
    5703 > select add #2.140
    5704 
    5705 91 models selected 
    5706 Grouped 91 regions 
    5707 Opened Hp-C1-4_imasked as #4, grid size 220,220,220, pixel 4.3, shown at step
    5708 1, values float32 
    5709 Segmenting Hp-C1-4_imasked, density threshold 0.005152 
    5710 Showing 55 region surfaces 
    5711 953 watershed regions, grouped to 55 regions 
    5712 Showing Hp-C1-4_imasked.seg - 55 regions, 55 surfaces 
    5713 
    5714 The cached device pixel ratio value was stale on window expose. Please file a
    5715 QTBUG which explains how to reproduce. 
    5716 
    5717 > save /Users/shoichitachiyama/Desktop/Chimera-Dec11_2024/All_periplasm.mrc
    5718 > models #4
    5719 
    5720 > select #2.16
    5721 
    5722 1 model selected 
    5723 
    5724 > select add #2.2
    5725 
    5726 2 models selected 
    5727 
    5728 > select add #2.7
    5729 
    5730 3 models selected 
    5731 
    5732 > select add #2.10
    5733 
    5734 4 models selected 
    5735 
    5736 > select add #2.13
    5737 
    5738 5 models selected 
    5739 
    5740 > select add #2.8
    5741 
    5742 6 models selected 
    5743 
    5744 > select add #2.14
    5745 
    5746 7 models selected 
    5747 
    5748 > select add #2.6
    5749 
    5750 8 models selected 
    5751 
    5752 > select add #2.9
    5753 
    5754 9 models selected 
    5755 
    5756 > select add #2.18
    5757 
    5758 10 models selected 
    5759 
    5760 > select add #2.1
    5761 
    5762 11 models selected 
    5763 
    5764 > select add #2.17
    5765 
    5766 12 models selected 
    5767 
    5768 > select add #2.4
    5769 
    5770 13 models selected 
    5771 
    5772 > select add #2.3
    5773 
    5774 14 models selected 
    5775 
    5776 > select add #2.15
    5777 
    5778 15 models selected 
    5779 
    5780 > select add #2.11
    5781 
    5782 16 models selected 
    5783 
    5784 > select add #2.12
    5785 
    5786 17 models selected 
    5787 
    5788 > select add #2.5
    5789 
    5790 18 models selected 
    5791 Ungrouped to 44 regions 
    5792 Ungrouped to 140 regions 
    5793 
    5794 > select clear
    5795 
    5796 > select #2.105
    5797 
    5798 1 model selected 
    5799 
    5800 > select add #2.104
    5801 
    5802 2 models selected 
    5803 
    5804 > select add #2.216
    5805 
    5806 3 models selected 
    5807 
    5808 > select add #2.217
    5809 
    5810 4 models selected 
    5811 
    5812 > select add #2.130
    5813 
    5814 5 models selected 
    5815 
    5816 > select add #2.134
    5817 
    5818 6 models selected 
    5819 
    5820 > select add #2.133
    5821 
    5822 7 models selected 
    5823 
    5824 > select add #2.131
    5825 
    5826 8 models selected 
    5827 
    5828 > select add #2.10
    5829 
    5830 9 models selected 
    5831 
    5832 > select add #2.8
    5833 
    5834 10 models selected 
    5835 
    5836 > select add #2.9
    5837 
    5838 11 models selected 
    5839 
    5840 > select add #2.203
    5841 
    5842 12 models selected 
    5843 
    5844 > select add #2.204
    5845 
    5846 13 models selected 
    5847 
    5848 > select add #2.4
    5849 
    5850 14 models selected 
    5851 
    5852 > select add #2.3
    5853 
    5854 15 models selected 
    5855 
    5856 > select add #2.1
    5857 
    5858 16 models selected 
    5859 
    5860 > select add #2.116
    5861 
    5862 17 models selected 
    5863 
    5864 > select add #2.115
    5865 
    5866 18 models selected 
    5867 
    5868 > select add #2.177
    5869 
    5870 19 models selected 
    5871 
    5872 > select add #2.190
    5873 
    5874 20 models selected 
    5875 
    5876 > select add #2.189
    5877 
    5878 21 models selected 
    5879 
    5880 > select add #2.181
    5881 
    5882 22 models selected 
    5883 
    5884 > select add #2.159
    5885 
    5886 23 models selected 
    5887 
    5888 > select add #2.113
    5889 
    5890 24 models selected 
    5891 
    5892 > select add #2.114
    5893 
    5894 25 models selected 
    5895 
    5896 > select add #2.201
    5897 
    5898 26 models selected 
    5899 
    5900 > select subtract #2.201
    5901 
    5902 25 models selected 
    5903 
    5904 > select add #2.200
    5905 
    5906 26 models selected 
    5907 
    5908 > select add #2.201
    5909 
    5910 27 models selected 
    5911 
    5912 > select add #2.135
    5913 
    5914 28 models selected 
    5915 
    5916 > select add #2.124
    5917 
    5918 29 models selected 
    5919 
    5920 > select add #2.198
    5921 
    5922 30 models selected 
    5923 
    5924 > select add #2.199
    5925 
    5926 31 models selected 
    5927 
    5928 > select add #2.103
    5929 
    5930 32 models selected 
    5931 
    5932 > select add #2.102
    5933 
    5934 33 models selected 
    5935 
    5936 > select add #2.156
    5937 
    5938 34 models selected 
    5939 
    5940 > select add #2.206
    5941 
    5942 35 models selected 
    5943 
    5944 > hide #!4 models
    5945 
    5946 > select add #2.125
    5947 
    5948 36 models selected 
    5949 
    5950 > select add #2.182
    5951 
    5952 37 models selected 
    5953 
    5954 > select add #2.19
    5955 
    5956 38 models selected 
    5957 
    5958 > select subtract #2.19
    5959 
    5960 37 models selected 
    5961 
    5962 > select add #2.137
    5963 
    5964 38 models selected 
    5965 
    5966 > select add #2.140
    5967 
    5968 39 models selected 
    5969 
    5970 > select subtract #2.140
    5971 
    5972 38 models selected 
    5973 
    5974 > select subtract #2.137
    5975 
    5976 37 models selected 
    5977 Grouped 37 regions 
    5978 
    5979 > select clear
    5980 
    5981 > select #2.120
    5982 
    5983 1 model selected 
    5984 
    5985 > select add #2.112
    5986 
    5987 2 models selected 
    5988 
    5989 > select add #2.197
    5990 
    5991 3 models selected 
    5992 
    5993 > select add #2.195
    5994 
    5995 4 models selected 
    5996 
    5997 > select subtract #2.195
    5998 
    5999 3 models selected 
    6000 
    6001 > select add #2.191
    6002 
    6003 4 models selected 
    6004 
    6005 > select add #2.59
    6006 
    6007 5 models selected 
    6008 
    6009 > select add #2.19
    6010 
    6011 6 models selected 
    6012 
    6013 > select subtract #2.19
    6014 
    6015 5 models selected 
    6016 
    6017 > select add #2.183
    6018 
    6019 6 models selected 
    6020 
    6021 > select add #2.220
    6022 
    6023 7 models selected 
    6024 
    6025 > select add #2.218
    6026 
    6027 8 models selected 
    6028 
    6029 > select subtract #2.218
    6030 
    6031 7 models selected 
    6032 
    6033 > select add #2.188
    6034 
    6035 8 models selected 
    6036 
    6037 > select add #2.207
    6038 
    6039 9 models selected 
    6040 
    6041 > select subtract #2.207
    6042 
    6043 8 models selected 
    6044 
    6045 > select add #2.211
    6046 
    6047 9 models selected 
    6048 
    6049 > select add #2.163
    6050 
    6051 10 models selected 
    6052 
    6053 > select add #2.5
    6054 
    6055 11 models selected 
    6056 
    6057 > select add #2.137
    6058 
    6059 12 models selected 
    6060 
    6061 > select add #2.146
    6062 
    6063 13 models selected 
    6064 
    6065 > select add #2.16
    6066 
    6067 14 models selected 
    6068 
    6069 > select add #2.169
    6070 
    6071 15 models selected 
    6072 
    6073 > select add #2.63
    6074 
    6075 16 models selected 
    6076 
    6077 > select add #2.128
    6078 
    6079 17 models selected 
    6080 
    6081 > select add #2.100
    6082 
    6083 18 models selected 
    6084 Grouped 18 regions 
    6085 
    6086 > select #2.179
    6087 
    6088 1 model selected 
    6089 Ungrouped to 6 regions 
    6090 
    6091 > select clear
    6092 
    6093 > select #2.8
    6094 
    6095 1 model selected 
    6096 
    6097 > select add #2.5
    6098 
    6099 2 models selected 
    6100 
    6101 > select add #2.150
    6102 
    6103 3 models selected 
    6104 
    6105 > select clear
    6106 
    6107 > select #2.150
    6108 
    6109 1 model selected 
    6110 Ungrouped to 4 regions 
    6111 
    6112 > select #2.58
    6113 
    6114 1 model selected 
    6115 
    6116 > select add #2.3
    6117 
    6118 2 models selected 
    6119 
    6120 > select add #2.5
    6121 
    6122 3 models selected 
    6123 
    6124 > select add #2.8
    6125 
    6126 4 models selected 
    6127 Grouped 4 regions 
    6128 
    6129 > select #2.140
    6130 
    6131 1 model selected 
    6132 Ungrouped to 4 regions 
    6133 
    6134 > select #2.63
    6135 
    6136 1 model selected 
    6137 
    6138 > select add #2.3
    6139 
    6140 2 models selected 
    6141 Grouped 2 regions 
    6142 
    6143 > select #2.132
    6144 
    6145 1 model selected 
    6146 
    6147 > select add #2.3
    6148 
    6149 2 models selected 
    6150 Grouped 2 regions 
    6151 
    6152 > select #2.126
    6153 
    6154 1 model selected 
    6155 Ungrouped to 6 regions 
    6156 Ungrouped to 7 regions 
    6157 
    6158 > select #2.75
    6159 
    6160 1 model selected 
    6161 
    6162 > select add #2.3
    6163 
    6164 2 models selected 
    6165 
    6166 > select subtract #2.3
    6167 
    6168 1 model selected 
    6169 
    6170 The cached device pixel ratio value was stale on window expose. Please file a
    6171 QTBUG which explains how to reproduce. 
    6172 
    6173 > select clear
    6174 
    6175 > select #2.75
    6176 
    6177 1 model selected 
    6178 
    6179 > select add #2.3
    6180 
    6181 2 models selected 
    6182 Grouped 2 regions 
    6183 Ungrouped to 2 regions 
    6184 Grouped 2 regions 
    6185 
    6186 > select clear
    6187 
    6188 > select #2.111
    6189 
    6190 1 model selected 
    6191 Ungrouped to 2 regions 
    6192 Ungrouped to 8 regions 
    6193 
    6194 > select #2.78
    6195 
    6196 1 model selected 
    6197 
    6198 > select add #2.82
    6199 
    6200 2 models selected 
    6201 
    6202 > select add #2.3
    6203 
    6204 3 models selected 
    6205 
    6206 > select clear
    6207 
    6208 > select #2.78
    6209 
    6210 1 model selected 
    6211 
    6212 > select #2.82
    6213 
    6214 1 model selected 
    6215 Ungrouped to 0 regions 
    6216 Ungrouped to 6 regions 
    6217 
    6218 > select #2.78
    6219 
    6220 1 model selected 
    6221 
    6222 > select add #2.3
    6223 
    6224 2 models selected 
    6225 
    6226 > select #2.78
    6227 
    6228 1 model selected 
    6229 
    6230 > select #2.3
    6231 
    6232 1 model selected 
    6233 
    6234 > select #2.195
    6235 
    6236 1 model selected 
    6237 Ungrouped to 5 regions 
    6238 
    6239 > select #2.38
    6240 
    6241 1 model selected 
    6242 
    6243 > select add #2.3
    6244 
    6245 2 models selected 
    6246 Grouped 2 regions 
    6247 
    6248 > select #2.187
    6249 
    6250 1 model selected 
    6251 Ungrouped to 5 regions 
    6252 Ungrouped to 6 regions 
    6253 
    6254 > select #2.98
    6255 
    6256 1 model selected 
    6257 
    6258 > select add #2.3
    6259 
    6260 2 models selected 
    6261 Grouped 2 regions 
    6262 
    6263 > select #2.144
    6264 
    6265 1 model selected 
    6266 
    6267 > select add #2.3
    6268 
    6269 2 models selected 
    6270 
    6271 > select add #2.7
    6272 
    6273 3 models selected 
    6274 
    6275 > select subtract #2.7
    6276 
    6277 2 models selected 
    6278 Grouped 2 regions 
    6279 
    6280 > select clear
    6281 
    6282 > select #2.7
    6283 
    6284 1 model selected 
    6285 Ungrouped to 5 regions 
    6286 Ungrouped to 3 regions 
    6287 
    6288 > select #2.104
    6289 
    6290 1 model selected 
    6291 
    6292 > select add #2.3
    6293 
    6294 2 models selected 
    6295 Grouped 2 regions 
    6296 
    6297 > select #2.14
    6298 
    6299 1 model selected 
    6300 Ungrouped to 4 regions 
    6301 
    6302 > select #2.105
    6303 
    6304 1 model selected 
    6305 
    6306 > select add #2.3
    6307 
    6308 2 models selected 
    6309 Grouped 2 regions 
    6310 
    6311 > select #2.218
    6312 
    6313 1 model selected 
    6314 Ungrouped to 6 regions 
    6315 Ungrouped to 2 regions 
    6316 
    6317 > select #2.115
    6318 
    6319 1 model selected 
    6320 
    6321 > select add #2.3
    6322 
    6323 2 models selected 
    6324 Grouped 2 regions 
    6325 
    6326 > select #2.3
    6327 
    6328 1 model selected 
    6329 Ungrouped to 2 regions 
    6330 Ungrouped to 4 regions 
    6331 Ungrouped to 20 regions 
    6332 
    6333 > select clear
    6334 
    6335 > select #2.169
    6336 
    6337 1 model selected 
    6338 Ungrouped to 4 regions 
    6339 
    6340 > select #2.197
    6341 
    6342 1 model selected 
    6343 Ungrouped to 2 regions 
    6344 
    6345 > select #2.198
    6346 
    6347 1 model selected 
    6348 
    6349 > select add #2.195
    6350 
    6351 2 models selected 
    6352 Grouped 2 regions 
    6353 
    6354 > select add #2.163
    6355 
    6356 2 models selected 
    6357 
    6358 > select add #2.131
    6359 
    6360 3 models selected 
    6361 
    6362 > select add #2.112
    6363 
    6364 4 models selected 
    6365 
    6366 > select add #2.183
    6367 
    6368 5 models selected 
    6369 
    6370 > select add #2.181
    6371 
    6372 6 models selected 
    6373 
    6374 > select add #2.177
    6375 
    6376 7 models selected 
    6377 
    6378 > select add #2.187
    6379 
    6380 8 models selected 
    6381 
    6382 > select add #2.115
    6383 
    6384 9 models selected 
    6385 
    6386 > select add #2.188
    6387 
    6388 10 models selected 
    6389 
    6390 > select add #2.128
    6391 
    6392 11 models selected 
    6393 
    6394 > select add #2.146
    6395 
    6396 12 models selected 
    6397 
    6398 > select add #2.140
    6399 
    6400 13 models selected 
    6401 
    6402 > select add #2.126
    6403 
    6404 14 models selected 
    6405 
    6406 > select add #2.159
    6407 
    6408 15 models selected 
    6409 
    6410 > select add #2.125
    6411 
    6412 16 models selected 
    6413 
    6414 > select add #2.179
    6415 
    6416 17 models selected 
    6417 
    6418 > select add #2.132
    6419 
    6420 18 models selected 
    6421 
    6422 > select add #2.137
    6423 
    6424 19 models selected 
    6425 
    6426 > select add #2.190
    6427 
    6428 20 models selected 
    6429 
    6430 > select add #2.124
    6431 
    6432 21 models selected 
    6433 
    6434 > select add #2.130
    6435 
    6436 22 models selected 
    6437 
    6438 > select add #2.133
    6439 
    6440 23 models selected 
    6441 
    6442 > select add #2.3
    6443 
    6444 24 models selected 
    6445 
    6446 > select add #2.182
    6447 
    6448 25 models selected 
    6449 
    6450 > select add #2.189
    6451 
    6452 26 models selected 
    6453 
    6454 > select add #2.156
    6455 
    6456 27 models selected 
    6457 
    6458 > select add #2.144
    6459 
    6460 28 models selected 
    6461 
    6462 > select add #2.150
    6463 
    6464 29 models selected 
    6465 Grouped 29 regions 
    6466 Showing 180 region surfaces 
    6467 
    6468 > select clear
    6469 
    6470 > select #2.1
    6471 
    6472 1 model selected 
    6473 Opened All_periplasm_imasked as #5, grid size 220,220,220, pixel 4.3, shown at
    6474 step 1, values float32 
    6475 
    6476 > select #2.1
    6477 
    6478 1 model selected 
    6479 
    6480 > select add #2.3
    6481 
    6482 2 models selected 
    6483 Grouped 2 regions 
    6484 Opened All_periplasm_imasked as #6, grid size 220,220,220, pixel 4.3, shown at
    6485 step 1, values float32 
    6486 Segmenting All_periplasm_imasked, density threshold 0.005152 
    6487 Showing 56 region surfaces 
    6488 848 watershed regions, grouped to 56 regions 
    6489 Showing All_periplasm_imasked.seg - 56 regions, 56 surfaces 
    6490 
    6491 > hide #!5 models
    6492 
    6493 > hide #!6 models
    6494 
    6495 The cached device pixel ratio value was stale on window expose. Please file a
    6496 QTBUG which explains how to reproduce. 
    6497 
    6498 > save /Users/shoichitachiyama/Desktop/Chimera-Dec11_2024/Cage-spoke.mrc
    6499 > models #6
    6500 
    6501 > save /Users/shoichitachiyama/Desktop/Chimera-Dec11_2024/SegmentationC1.cxs
    6502 > includeMaps true
    6503 
    6504 > close session
    6505 
    6506 > open /Users/shoichitachiyama/Desktop/For-Fig4FG-3_Dec112024.cxs
    6507 
    6508 Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
    6509 level 0.0144, step 1, values float32 
    6510 Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
    6511 4.3, shown at level 0.0151, step 1, values float32 
    6512 Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
    6513 4.3,4.3,4.3, shown at level 0.00853, step 1, values float32 
    6514 Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
    6515 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    6516 Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
    6517 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    6518 Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
    6519 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    6520 Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
    6521 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    6522 Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
    6523 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    6524 Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
    6525 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    6526 Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
    6527 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    6528 Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
    6529 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    6530 Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
    6531 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    6532 Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
    6533 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    6534 Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
    6535 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    6536 Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
    6537 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    6538 Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
    6539 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    6540 Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
    6541 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    6542 Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
    6543 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    6544 Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
    6545 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    6546 Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
    6547 pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32 
    6548 Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
    6549 level 0.0186, step 1, values float32 
    6550 Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
    6551 shown at level 0.0702, step 1, values float32 
    6552 Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
    6553 at level 0.0323, step 1, values float32 
    6554 Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6555 shown at level 0.00933, step 1, values float32 
    6556 Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6557 shown at level 0.00933, step 1, values float32 
    6558 Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6559 shown at level 0.00933, step 1, values float32 
    6560 Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6561 shown at level 0.00933, step 1, values float32 
    6562 Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6563 shown at level 0.00933, step 1, values float32 
    6564 Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6565 shown at level 0.00933, step 1, values float32 
    6566 Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6567 shown at level 0.00933, step 1, values float32 
    6568 Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6569 shown at level 0.00933, step 1, values float32 
    6570 Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6571 shown at level 0.00933, step 1, values float32 
    6572 Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6573 shown at level 0.00933, step 1, values float32 
    6574 Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6575 shown at level 0.00933, step 1, values float32 
    6576 Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6577 shown at level 0.00933, step 1, values float32 
    6578 Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6579 shown at level 0.00933, step 1, values float32 
    6580 Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6581 shown at level 0.00933, step 1, values float32 
    6582 Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6583 shown at level 0.00933, step 1, values float32 
    6584 Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6585 shown at level 0.00933, step 1, values float32 
    6586 Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6587 shown at level 0.00933, step 1, values float32 
    6588 Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6589 shown at level 0.00933, step 1, values float32 
    6590 Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
    6591 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    6592 Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
    6593 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    6594 Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
    6595 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    6596 Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
    6597 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    6598 Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
    6599 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    6600 Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
    6601 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    6602 Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
    6603 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    6604 Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
    6605 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    6606 Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
    6607 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    6608 Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
    6609 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    6610 Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
    6611 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    6612 Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
    6613 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    6614 Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
    6615 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    6616 Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
    6617 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    6618 Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
    6619 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    6620 Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
    6621 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    6622 Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
    6623 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    6624 Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
    6625 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    6626 Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
    6627 4.3,4.3,4.3, shown at level 0.0038, step 1, values float32 
    6628 Opened PflA.mrc as #424, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
    6629 level 0.00712, step 1, values float32 
    6630 Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    6631 at level 0.00712, step 1, values float32 
    6632 Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    6633 at level 0.00712, step 1, values float32 
    6634 Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    6635 at level 0.00712, step 1, values float32 
    6636 Opened PflA.mrc copy as #428, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    6637 at level 0.00712, step 1, values float32 
    6638 Opened PflA.mrc copy as #429, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    6639 at level 0.00712, step 1, values float32 
    6640 Opened PflA.mrc copy as #430, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    6641 at level 0.00712, step 1, values float32 
    6642 Opened PflA.mrc copy as #431, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    6643 at level 0.00712, step 1, values float32 
    6644 Opened PflA.mrc copy as #432, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    6645 at level 0.00712, step 1, values float32 
    6646 Opened PflA.mrc copy as #433, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    6647 at level 0.00712, step 1, values float32 
    6648 Opened PflA.mrc copy as #434, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    6649 at level 0.00712, step 1, values float32 
    6650 Opened PflA.mrc copy as #435, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    6651 at level 0.00712, step 1, values float32 
    6652 Opened PflA.mrc copy as #436, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    6653 at level 0.00712, step 1, values float32 
    6654 Opened PflA.mrc copy as #437, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    6655 at level 0.00712, step 1, values float32 
    6656 Opened PflA.mrc copy as #438, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    6657 at level 0.00712, step 1, values float32 
    6658 Opened PflA.mrc copy as #439, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    6659 at level 0.00712, step 1, values float32 
    6660 Opened PflA.mrc copy as #440, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    6661 at level 0.00712, step 1, values float32 
    6662 Opened PflA.mrc copy as #441, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    6663 at level 0.00712, step 1, values float32 
    6664 Opened Cage_top.mrc as #442, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
    6665 at level 0.00712, step 1, values float32 
    6666 Opened Cage_top.mrc copy as #443, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6667 shown at level 0.00712, step 1, values float32 
    6668 Opened Cage_top.mrc copy as #444, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6669 shown at level 0.00712, step 1, values float32 
    6670 Opened Cage_top.mrc copy as #445, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6671 shown at level 0.00712, step 1, values float32 
    6672 Opened Cage_top.mrc copy as #446, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6673 shown at level 0.00712, step 1, values float32 
    6674 Opened Cage_top.mrc copy as #447, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6675 shown at level 0.00712, step 1, values float32 
    6676 Opened Cage_top.mrc copy as #448, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6677 shown at level 0.00712, step 1, values float32 
    6678 Opened Cage_top.mrc copy as #449, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6679 shown at level 0.00712, step 1, values float32 
    6680 Opened Cage_top.mrc copy as #450, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6681 shown at level 0.00712, step 1, values float32 
    6682 Opened Cage_top.mrc copy as #451, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6683 shown at level 0.00712, step 1, values float32 
    6684 Opened Cage_top.mrc copy as #452, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6685 shown at level 0.00712, step 1, values float32 
    6686 Opened Cage_top.mrc copy as #453, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6687 shown at level 0.00712, step 1, values float32 
    6688 Opened Cage_top.mrc copy as #454, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6689 shown at level 0.00712, step 1, values float32 
    6690 Opened Cage_top.mrc copy as #455, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6691 shown at level 0.00712, step 1, values float32 
    6692 Opened Cage_top.mrc copy as #456, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6693 shown at level 0.00712, step 1, values float32 
    6694 Opened Cage_top.mrc copy as #457, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6695 shown at level 0.00712, step 1, values float32 
    6696 Opened Cage_top.mrc copy as #458, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6697 shown at level 0.00712, step 1, values float32 
    6698 Opened Cage_top.mrc copy as #459, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6699 shown at level 0.00712, step 1, values float32 
    6700 Opened MotB_PG.mrc as #460, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
    6701 level 0.00707, step 1, values float32 
    6702 Opened MotB_PG.mrc copy as #461, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6703 shown at level 0.00707, step 1, values float32 
    6704 Opened MotB_PG.mrc copy as #462, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6705 shown at level 0.00707, step 1, values float32 
    6706 Opened MotB_PG.mrc copy as #463, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6707 shown at level 0.00707, step 1, values float32 
    6708 Opened MotB_PG.mrc copy as #464, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6709 shown at level 0.00707, step 1, values float32 
    6710 Opened MotB_PG.mrc copy as #465, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6711 shown at level 0.00707, step 1, values float32 
    6712 Opened MotB_PG.mrc copy as #466, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6713 shown at level 0.00707, step 1, values float32 
    6714 Opened MotB_PG.mrc copy as #467, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6715 shown at level 0.00707, step 1, values float32 
    6716 Opened MotB_PG.mrc copy as #468, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6717 shown at level 0.00707, step 1, values float32 
    6718 Opened MotB_PG.mrc copy as #469, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6719 shown at level 0.00707, step 1, values float32 
    6720 Opened MotB_PG.mrc copy as #470, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6721 shown at level 0.00707, step 1, values float32 
    6722 Opened MotB_PG.mrc copy as #471, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6723 shown at level 0.00707, step 1, values float32 
    6724 Opened MotB_PG.mrc copy as #472, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6725 shown at level 0.00707, step 1, values float32 
    6726 Opened MotB_PG.mrc copy as #473, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6727 shown at level 0.00707, step 1, values float32 
    6728 Opened MotB_PG.mrc copy as #474, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6729 shown at level 0.00707, step 1, values float32 
    6730 Opened MotB_PG.mrc copy as #475, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6731 shown at level 0.00707, step 1, values float32 
    6732 Opened MotB_PG.mrc copy as #476, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6733 shown at level 0.00707, step 1, values float32 
    6734 Opened MotB_PG.mrc copy as #477, grid size 160,160,200, pixel 4.3,4.3,4.3,
    6735 shown at level 0.00707, step 1, values float32 
    6736 Opened New_FliF.mrc gaussian as #479, grid size 256,256,256, pixel 2.1, shown
    6737 at level 0.0115, step 1, values float32 
    6738 Opened New_FlhA.mrc gaussian as #481, grid size 256,256,256, pixel 2.1, shown
    6739 at level 0.00316, step 1, values float32 
    6740 Opened PflBC13.mrc as #482, grid size 256,256,256, pixel 2.1, shown at level
    6741 0.00615, step 1, values float32 
    6742 Opened New_IM_Bottom2.mrc as #483, grid size 256,256,256, pixel 2.1, shown at
    6743 level 0.0072, step 1, values float32 
    6744 Opened New_IM_Bottom2.mrc gaussian as #484, grid size 256,256,256, pixel 2.1,
    6745 shown at level 0.0072, step 1, values float32 
    6746 Opened PflB_C13.mrc as #507, grid size 256,256,256, pixel 2.1, shown at level
    6747 0.0015, step 1, values float32 
    6748 Opened PflB_monomer.mrc as #508, grid size 256,256,256, pixel 2.1, shown at
    6749 level 0.00116, step 1, values float32 
    6750 Opened Unknown-ring.mrc as #509, grid size 256,256,256, pixel 2.1, shown at
    6751 level 0.000608, step 1, values float32 
    6752 Opened PflB_C13.mrc gaussian as #510, grid size 256,256,256, pixel 2.1, shown
    6753 at level 0.00108, step 1, values float32 
    6754 Opened PflB_monomer.mrc gaussian as #511, grid size 256,256,256, pixel 2.1,
    6755 shown at level 0.000387, step 1, values float32 
    6756 Opened Unknown-ring.mrc gaussian as #512, grid size 256,256,256, pixel 2.1,
    6757 shown at level 0.00109, step 1, values float32 
    6758 Opened 0838-disk.mrc gaussian as #513, grid size 240,240,240, pixel 4.3, shown
    6759 at level 0.0153, step 1, values float32 
    6760 Opened 0838-top.mrc gaussian as #514, grid size 240,240,240, pixel 4.3, shown
    6761 at level 0.00979, step 1, values float32 
    6762 Opened HP_C-ring_monomer.mrc copy gaussian as #177.1, grid size 160,160,160,
    6763 pixel 4.2, shown at level 0.04, step 1, values float32 
    6764 Opened HP_C-ring_monomer.mrc copy gaussian as #177.2, grid size 160,160,160,
    6765 pixel 4.2, shown at level 0.04, step 1, values float32 
    6766 Opened HP_C-ring_monomer.mrc copy gaussian as #177.3, grid size 160,160,160,
    6767 pixel 4.2, shown at level 0.04, step 1, values float32 
    6768 Opened HP_C-ring_monomer.mrc copy gaussian as #177.4, grid size 160,160,160,
    6769 pixel 4.2, shown at level 0.04, step 1, values float32 
    6770 Opened HP_C-ring_monomer.mrc copy gaussian as #177.5, grid size 160,160,160,
    6771 pixel 4.2, shown at level 0.04, step 1, values float32 
    6772 Opened HP_C-ring_monomer.mrc copy gaussian as #177.6, grid size 160,160,160,
    6773 pixel 4.2, shown at level 0.04, step 1, values float32 
    6774 Opened HP_C-ring_monomer.mrc copy gaussian as #177.7, grid size 160,160,160,
    6775 pixel 4.2, shown at level 0.04, step 1, values float32 
    6776 Opened HP_C-ring_monomer.mrc copy gaussian as #177.8, grid size 160,160,160,
    6777 pixel 4.2, shown at level 0.04, step 1, values float32 
    6778 Opened HP_C-ring_monomer.mrc copy gaussian as #177.9, grid size 160,160,160,
    6779 pixel 4.2, shown at level 0.04, step 1, values float32 
    6780 Opened HP_C-ring_monomer.mrc copy gaussian as #177.10, grid size 160,160,160,
    6781 pixel 4.2, shown at level 0.04, step 1, values float32 
    6782 Opened HP_C-ring_monomer.mrc copy gaussian as #177.11, grid size 160,160,160,
    6783 pixel 4.2, shown at level 0.04, step 1, values float32 
    6784 Opened HP_C-ring_monomer.mrc copy gaussian as #177.12, grid size 160,160,160,
    6785 pixel 4.2, shown at level 0.04, step 1, values float32 
    6786 Opened HP_C-ring_monomer.mrc copy gaussian as #177.13, grid size 160,160,160,
    6787 pixel 4.2, shown at level 0.04, step 1, values float32 
    6788 Opened HP_C-ring_monomer.mrc copy gaussian as #177.14, grid size 160,160,160,
    6789 pixel 4.2, shown at level 0.04, step 1, values float32 
    6790 Opened HP_C-ring_monomer.mrc copy gaussian as #177.15, grid size 160,160,160,
    6791 pixel 4.2, shown at level 0.04, step 1, values float32 
    6792 Opened HP_C-ring_monomer.mrc copy gaussian as #177.16, grid size 160,160,160,
    6793 pixel 4.2, shown at level 0.04, step 1, values float32 
    6794 Opened HP_C-ring_monomer.mrc copy gaussian as #177.17, grid size 160,160,160,
    6795 pixel 4.2, shown at level 0.04, step 1, values float32 
    6796 Opened HP_C-ring_monomer.mrc copy gaussian as #177.18, grid size 160,160,160,
    6797 pixel 4.2, shown at level 0.04, step 1, values float32 
    6798 Opened HP_C-ring_monomer.mrc copy gaussian as #177.19, grid size 160,160,160,
    6799 pixel 4.2, shown at level 0.04, step 1, values float32 
    6800 Opened HP_C-ring_monomer.mrc copy gaussian as #177.20, grid size 160,160,160,
    6801 pixel 4.2, shown at level 0.04, step 1, values float32 
    6802 Opened HP_C-ring_monomer.mrc copy gaussian as #177.21, grid size 160,160,160,
    6803 pixel 4.2, shown at level 0.04, step 1, values float32 
    6804 Opened HP_C-ring_monomer.mrc copy gaussian as #177.22, grid size 160,160,160,
    6805 pixel 4.2, shown at level 0.04, step 1, values float32 
    6806 Opened HP_C-ring_monomer.mrc copy gaussian as #177.23, grid size 160,160,160,
    6807 pixel 4.2, shown at level 0.04, step 1, values float32 
    6808 Opened HP_C-ring_monomer.mrc copy gaussian as #177.24, grid size 160,160,160,
    6809 pixel 4.2, shown at level 0.04, step 1, values float32 
    6810 Opened HP_C-ring_monomer.mrc copy gaussian as #177.25, grid size 160,160,160,
    6811 pixel 4.2, shown at level 0.04, step 1, values float32 
    6812 Opened HP_C-ring_monomer.mrc copy gaussian as #177.26, grid size 160,160,160,
    6813 pixel 4.2, shown at level 0.04, step 1, values float32 
    6814 Opened HP_C-ring_monomer.mrc copy gaussian as #177.27, grid size 160,160,160,
    6815 pixel 4.2, shown at level 0.04, step 1, values float32 
    6816 Opened HP_C-ring_monomer.mrc copy gaussian as #177.28, grid size 160,160,160,
    6817 pixel 4.2, shown at level 0.04, step 1, values float32 
    6818 Opened HP_C-ring_monomer.mrc copy gaussian as #177.29, grid size 160,160,160,
    6819 pixel 4.2, shown at level 0.04, step 1, values float32 
    6820 Opened HP_C-ring_monomer.mrc copy gaussian as #177.30, grid size 160,160,160,
    6821 pixel 4.2, shown at level 0.04, step 1, values float32 
    6822 Opened HP_C-ring_monomer.mrc copy gaussian as #177.31, grid size 160,160,160,
    6823 pixel 4.2, shown at level 0.04, step 1, values float32 
    6824 Opened HP_C-ring_monomer.mrc copy gaussian as #177.32, grid size 160,160,160,
    6825 pixel 4.2, shown at level 0.04, step 1, values float32 
    6826 Opened HP_C-ring_monomer.mrc copy gaussian as #177.33, grid size 160,160,160,
    6827 pixel 4.2, shown at level 0.04, step 1, values float32 
    6828 Opened HP_C-ring_monomer.mrc copy gaussian as #177.34, grid size 160,160,160,
    6829 pixel 4.2, shown at level 0.04, step 1, values float32 
    6830 Opened HP_C-ring_monomer.mrc copy gaussian as #177.35, grid size 160,160,160,
    6831 pixel 4.2, shown at level 0.04, step 1, values float32 
    6832 Opened HP_C-ring_monomer.mrc copy gaussian as #177.36, grid size 160,160,160,
    6833 pixel 4.2, shown at level 0.04, step 1, values float32 
    6834 Opened HP_C-ring_monomer.mrc copy gaussian as #177.37, grid size 160,160,160,
    6835 pixel 4.2, shown at level 0.04, step 1, values float32 
    6836 Opened HP_C-ring_monomer.mrc copy gaussian as #177.38, grid size 160,160,160,
    6837 pixel 4.2, shown at level 0.04, step 1, values float32 
    6838 Opened HP_C-ring_monomer.mrc copy gaussian as #177.39, grid size 160,160,160,
    6839 pixel 4.2, shown at level 0.04, step 1, values float32 
    6840 Opened HP_C-ring_monomer.mrc copy gaussian as #177.40, grid size 160,160,160,
    6841 pixel 4.2, shown at level 0.04, step 1, values float32 
    6842 Opened FlgV_monomer.mrc gaussian as #259.1, grid size 160,160,160, pixel 4.2,
    6843 shown at level 0.015, step 1, values float32 
    6844 Opened FlgV_monomer.mrc copy gaussian as #259.2, grid size 160,160,160, pixel
    6845 4.2, shown at level 0.015, step 1, values float32 
    6846 Opened FlgV_monomer.mrc copy gaussian as #259.3, grid size 160,160,160, pixel
    6847 4.2, shown at level 0.015, step 1, values float32 
    6848 Opened FlgV_monomer.mrc copy gaussian as #259.4, grid size 160,160,160, pixel
    6849 4.2, shown at level 0.015, step 1, values float32 
    6850 Opened FlgV_monomer.mrc copy gaussian as #259.5, grid size 160,160,160, pixel
    6851 4.2, shown at level 0.015, step 1, values float32 
    6852 Opened FlgV_monomer.mrc copy gaussian as #259.6, grid size 160,160,160, pixel
    6853 4.2, shown at level 0.015, step 1, values float32 
    6854 Opened FlgV_monomer.mrc copy gaussian as #259.7, grid size 160,160,160, pixel
    6855 4.2, shown at level 0.015, step 1, values float32 
    6856 Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel
    6857 4.2, shown at level 0.015, step 1, values float32 
    6858 Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel
    6859 4.2, shown at level 0.015, step 1, values float32 
    6860 Opened FlgV_monomer.mrc copy gaussian as #259.10, grid size 160,160,160, pixel
    6861 4.2, shown at level 0.015, step 1, values float32 
    6862 Opened FlgV_monomer.mrc copy gaussian as #259.11, grid size 160,160,160, pixel
    6863 4.2, shown at level 0.015, step 1, values float32 
    6864 Opened FlgV_monomer.mrc copy gaussian as #259.12, grid size 160,160,160, pixel
    6865 4.2, shown at level 0.015, step 1, values float32 
    6866 Opened FlgV_monomer.mrc copy gaussian as #259.13, grid size 160,160,160, pixel
    6867 4.2, shown at level 0.015, step 1, values float32 
    6868 Opened FlgV_monomer.mrc copy gaussian as #259.14, grid size 160,160,160, pixel
    6869 4.2, shown at level 0.015, step 1, values float32 
    6870 Opened FlgV_monomer.mrc copy gaussian as #259.15, grid size 160,160,160, pixel
    6871 4.2, shown at level 0.015, step 1, values float32 
    6872 Opened FlgV_monomer.mrc copy gaussian as #259.16, grid size 160,160,160, pixel
    6873 4.2, shown at level 0.015, step 1, values float32 
    6874 Opened FlgV_monomer.mrc copy gaussian as #259.17, grid size 160,160,160, pixel
    6875 4.2, shown at level 0.015, step 1, values float32 
    6876 Opened FlgV_monomer.mrc copy gaussian as #259.18, grid size 160,160,160, pixel
    6877 4.2, shown at level 0.015, step 1, values float32 
    6878 Opened FlgV_monomer.mrc copy gaussian as #259.19, grid size 160,160,160, pixel
    6879 4.2, shown at level 0.015, step 1, values float32 
    6880 Opened FlgV_monomer.mrc copy gaussian as #259.20, grid size 160,160,160, pixel
    6881 4.2, shown at level 0.015, step 1, values float32 
    6882 Opened FlgV_monomer.mrc copy gaussian as #259.21, grid size 160,160,160, pixel
    6883 4.2, shown at level 0.015, step 1, values float32 
    6884 Opened FlgY-with-joints.mrc as #93, grid size 220,220,220, pixel 4.3, shown at
    6885 level 2.81, step 1, values float32 
    6886 Opened Cage_1unit.mrc copy as #85, grid size 240,240,240, pixel 2.1, shown at
    6887 level 0.0446, step 1, values float32 
    6888 Opened FliL.mrc copy as #101, grid size 240,240,240, pixel 2.1, shown at level
    6889 0.0732, step 1, values float32 
    6890 Opened FliL.mrc copy as #102, grid size 240,240,240, pixel 2.1, shown at level
    6891 0.0732, step 1, values float32 
    6892 Opened FliL.mrc copy as #103, grid size 240,240,240, pixel 2.1, shown at level
    6893 0.0732, step 1, values float32 
    6894 Opened FliL.mrc copy as #104, grid size 240,240,240, pixel 2.1, shown at level
    6895 0.0732, step 1, values float32 
    6896 Opened FliL.mrc copy as #105, grid size 240,240,240, pixel 2.1, shown at level
    6897 0.0732, step 1, values float32 
    6898 Opened FliL.mrc copy as #106, grid size 240,240,240, pixel 2.1, shown at level
    6899 0.0732, step 1, values float32 
    6900 Opened FliL.mrc copy as #107, grid size 240,240,240, pixel 2.1, shown at level
    6901 0.0732, step 1, values float32 
    6902 Opened FliL.mrc copy as #108, grid size 240,240,240, pixel 2.1, shown at level
    6903 0.0732, step 1, values float32 
    6904 Opened FliL.mrc copy as #109, grid size 240,240,240, pixel 2.1, shown at level
    6905 0.0732, step 1, values float32 
    6906 Opened FliL.mrc copy as #110, grid size 240,240,240, pixel 2.1, shown at level
    6907 0.0732, step 1, values float32 
    6908 Opened FliL.mrc copy as #111, grid size 240,240,240, pixel 2.1, shown at level
    6909 0.0732, step 1, values float32 
    6910 Opened FliL.mrc copy as #112, grid size 240,240,240, pixel 2.1, shown at level
    6911 0.0732, step 1, values float32 
    6912 Opened FliL.mrc copy as #114, grid size 240,240,240, pixel 2.1, shown at level
    6913 0.0732, step 1, values float32 
    6914 Opened FliL.mrc copy as #116, grid size 240,240,240, pixel 2.1, shown at level
    6915 0.0732, step 1, values float32 
    6916 Opened FliL.mrc copy as #117, grid size 240,240,240, pixel 2.1, shown at level
    6917 0.0732, step 1, values float32 
    6918 Opened FliL.mrc copy as #118, grid size 240,240,240, pixel 2.1, shown at level
    6919 0.0732, step 1, values float32 
    6920 Opened FliL.mrc copy as #119, grid size 240,240,240, pixel 2.1, shown at level
    6921 0.0732, step 1, values float32 
    6922 Opened FliL.mrc copy as #120, grid size 240,240,240, pixel 2.1, shown at level
    6923 0.0732, step 1, values float32 
    6924 Opened Cage.mrc copy as #195, grid size 240,240,240, pixel 2.1, shown at level
    6925 0.0891, step 1, values float32 
    6926 Opened Cage.mrc copy as #196, grid size 240,240,240, pixel 2.1, shown at level
    6927 0.0891, step 1, values float32 
    6928 Opened Cage.mrc copy as #197, grid size 240,240,240, pixel 2.1, shown at level
    6929 0.0891, step 1, values float32 
    6930 Opened Cage.mrc copy as #198, grid size 240,240,240, pixel 2.1, shown at level
    6931 0.0891, step 1, values float32 
    6932 Opened Cage.mrc copy as #199, grid size 240,240,240, pixel 2.1, shown at level
    6933 0.0891, step 1, values float32 
    6934 Opened Cage.mrc copy as #200, grid size 240,240,240, pixel 2.1, shown at level
    6935 0.0891, step 1, values float32 
    6936 Opened Cage.mrc copy as #201, grid size 240,240,240, pixel 2.1, shown at level
    6937 0.0891, step 1, values float32 
    6938 Opened Cage.mrc copy as #202, grid size 240,240,240, pixel 2.1, shown at level
    6939 0.0891, step 1, values float32 
    6940 Opened Cage.mrc copy as #203, grid size 240,240,240, pixel 2.1, shown at level
    6941 0.0891, step 1, values float32 
    6942 Opened Cage.mrc copy as #204, grid size 240,240,240, pixel 2.1, shown at level
    6943 0.0891, step 1, values float32 
    6944 Opened Cage.mrc copy as #205, grid size 240,240,240, pixel 2.1, shown at level
    6945 0.0891, step 1, values float32 
    6946 Opened Cage.mrc copy as #206, grid size 240,240,240, pixel 2.1, shown at level
    6947 0.0891, step 1, values float32 
    6948 Opened Cage.mrc copy as #207, grid size 240,240,240, pixel 2.1, shown at level
    6949 0.0891, step 1, values float32 
    6950 Opened Cage.mrc copy as #208, grid size 240,240,240, pixel 2.1, shown at level
    6951 0.0891, step 1, values float32 
    6952 Opened Cage.mrc copy as #209, grid size 240,240,240, pixel 2.1, shown at level
    6953 0.0891, step 1, values float32 
    6954 Opened Cage.mrc copy as #210, grid size 240,240,240, pixel 2.1, shown at level
    6955 0.0891, step 1, values float32 
    6956 Opened Cage.mrc copy as #211, grid size 240,240,240, pixel 2.1, shown at level
    6957 0.0891, step 1, values float32 
    6958 Opened Cage.mrc copy as #212, grid size 240,240,240, pixel 2.1, shown at level
    6959 0.0891, step 1, values float32 
    6960 Opened PflA_new.mrc as #68, grid size 240,240,240, pixel 2.1, shown at level
    6961 0.162, step 1, values float32 
    6962 Opened Unknown_near_PflA.mrc as #69, grid size 240,240,240, pixel 2.1, shown
    6963 at level 0.127, step 1, values float32 
    6964 Opened PflB_new.mrc as #70, grid size 240,240,240, pixel 2.1, shown at level
    6965 0.0467, step 1, values float32 
    6966 Opened Top-cage.mrc as #71, grid size 240,240,240, pixel 2.1, shown at level
    6967 0.143, step 1, values float32 
    6968 Opened PflA_new.mrc copy as #1, grid size 240,240,240, pixel 2.1, shown at
    6969 level 0.162, step 1, values float32 
    6970 Opened PflA_new.mrc copy as #2, grid size 240,240,240, pixel 2.1, shown at
    6971 level 0.162, step 1, values float32 
    6972 Opened PflA_new.mrc copy as #3, grid size 240,240,240, pixel 2.1, shown at
    6973 level 0.162, step 1, values float32 
    6974 Opened PflA_new.mrc copy as #4, grid size 240,240,240, pixel 2.1, shown at
    6975 level 0.162, step 1, values float32 
    6976 Opened PflA_new.mrc copy as #5, grid size 240,240,240, pixel 2.1, shown at
    6977 level 0.162, step 1, values float32 
    6978 Opened PflA_new.mrc copy as #6, grid size 240,240,240, pixel 2.1, shown at
    6979 level 0.162, step 1, values float32 
    6980 Opened PflA_new.mrc copy as #7, grid size 240,240,240, pixel 2.1, shown at
    6981 level 0.162, step 1, values float32 
    6982 Opened PflA_new.mrc copy as #8, grid size 240,240,240, pixel 2.1, shown at
    6983 level 0.162, step 1, values float32 
    6984 Opened PflA_new.mrc copy as #9, grid size 240,240,240, pixel 2.1, shown at
    6985 level 0.162, step 1, values float32 
    6986 Opened PflA_new.mrc copy as #10, grid size 240,240,240, pixel 2.1, shown at
    6987 level 0.162, step 1, values float32 
    6988 Opened PflA_new.mrc copy as #11, grid size 240,240,240, pixel 2.1, shown at
    6989 level 0.162, step 1, values float32 
    6990 Opened PflA_new.mrc copy as #12, grid size 240,240,240, pixel 2.1, shown at
    6991 level 0.162, step 1, values float32 
    6992 Opened PflA_new.mrc copy as #13, grid size 240,240,240, pixel 2.1, shown at
    6993 level 0.162, step 1, values float32 
    6994 Opened PflA_new.mrc copy as #14, grid size 240,240,240, pixel 2.1, shown at
    6995 level 0.162, step 1, values float32 
    6996 Opened PflA_new.mrc copy as #15, grid size 240,240,240, pixel 2.1, shown at
    6997 level 0.162, step 1, values float32 
    6998 Opened PflA_new.mrc copy as #17, grid size 240,240,240, pixel 2.1, shown at
    6999 level 0.162, step 1, values float32 
    7000 Opened PflA_new.mrc copy as #18, grid size 240,240,240, pixel 2.1, shown at
    7001 level 0.162, step 1, values float32 
    7002 Opened PflA_new.mrc copy as #19, grid size 240,240,240, pixel 2.1, shown at
    7003 level 0.162, step 1, values float32 
    7004 Opened Unknown_near_PflA.mrc copy as #20, grid size 240,240,240, pixel 2.1,
    7005 shown at level 0.15, step 1, values float32 
    7006 Opened Unknown_near_PflA.mrc copy as #21, grid size 240,240,240, pixel 2.1,
    7007 shown at level 0.127, step 1, values float32 
    7008 Opened Unknown_near_PflA.mrc copy as #22, grid size 240,240,240, pixel 2.1,
    7009 shown at level 0.127, step 1, values float32 
    7010 Opened Unknown_near_PflA.mrc copy as #23, grid size 240,240,240, pixel 2.1,
    7011 shown at level 0.127, step 1, values float32 
    7012 Opened Unknown_near_PflA.mrc copy as #24, grid size 240,240,240, pixel 2.1,
    7013 shown at level 0.127, step 1, values float32 
    7014 Opened Unknown_near_PflA.mrc copy as #25, grid size 240,240,240, pixel 2.1,
    7015 shown at level 0.127, step 1, values float32 
    7016 Opened Unknown_near_PflA.mrc copy as #26, grid size 240,240,240, pixel 2.1,
    7017 shown at level 0.127, step 1, values float32 
    7018 Opened Unknown_near_PflA.mrc copy as #27, grid size 240,240,240, pixel 2.1,
    7019 shown at level 0.127, step 1, values float32 
    7020 Opened Unknown_near_PflA.mrc copy as #28, grid size 240,240,240, pixel 2.1,
    7021 shown at level 0.127, step 1, values float32 
    7022 Opened Unknown_near_PflA.mrc copy as #29, grid size 240,240,240, pixel 2.1,
    7023 shown at level 0.127, step 1, values float32 
    7024 Opened Unknown_near_PflA.mrc copy as #30, grid size 240,240,240, pixel 2.1,
    7025 shown at level 0.127, step 1, values float32 
    7026 Opened Unknown_near_PflA.mrc copy as #31, grid size 240,240,240, pixel 2.1,
    7027 shown at level 0.127, step 1, values float32 
    7028 Opened Unknown_near_PflA.mrc copy as #32, grid size 240,240,240, pixel 2.1,
    7029 shown at level 0.127, step 1, values float32 
    7030 Opened Unknown_near_PflA.mrc copy as #33, grid size 240,240,240, pixel 2.1,
    7031 shown at level 0.127, step 1, values float32 
    7032 Opened Unknown_near_PflA.mrc copy as #34, grid size 240,240,240, pixel 2.1,
    7033 shown at level 0.127, step 1, values float32 
    7034 Opened Unknown_near_PflA.mrc copy as #35, grid size 240,240,240, pixel 2.1,
    7035 shown at level 0.127, step 1, values float32 
    7036 Opened Unknown_near_PflA.mrc copy as #36, grid size 240,240,240, pixel 2.1,
    7037 shown at level 0.127, step 1, values float32 
    7038 Opened Unknown_near_PflA.mrc copy as #37, grid size 240,240,240, pixel 2.1,
    7039 shown at level 0.127, step 1, values float32 
    7040 Opened PflB_new.mrc copy as #38, grid size 240,240,240, pixel 2.1, shown at
    7041 level 0.0467, step 1, values float32 
    7042 Opened PflB_new.mrc copy as #39, grid size 240,240,240, pixel 2.1, shown at
    7043 level 0.0467, step 1, values float32 
    7044 Opened PflB_new.mrc copy as #40, grid size 240,240,240, pixel 2.1, shown at
    7045 level 0.0467, step 1, values float32 
    7046 Opened PflB_new.mrc copy as #41, grid size 240,240,240, pixel 2.1, shown at
    7047 level 0.0467, step 1, values float32 
    7048 Opened PflB_new.mrc copy as #42, grid size 240,240,240, pixel 2.1, shown at
    7049 level 0.0467, step 1, values float32 
    7050 Opened PflB_new.mrc copy as #43, grid size 240,240,240, pixel 2.1, shown at
    7051 level 0.0467, step 1, values float32 
    7052 Opened PflB_new.mrc copy as #44, grid size 240,240,240, pixel 2.1, shown at
    7053 level 0.0467, step 1, values float32 
    7054 Opened PflB_new.mrc copy as #45, grid size 240,240,240, pixel 2.1, shown at
    7055 level 0.0467, step 1, values float32 
    7056 Opened PflB_new.mrc copy as #46, grid size 240,240,240, pixel 2.1, shown at
    7057 level 0.0467, step 1, values float32 
    7058 Opened PflB_new.mrc copy as #47, grid size 240,240,240, pixel 2.1, shown at
    7059 level 0.0467, step 1, values float32 
    7060 Opened PflB_new.mrc copy as #48, grid size 240,240,240, pixel 2.1, shown at
    7061 level 0.0467, step 1, values float32 
    7062 Opened PflB_new.mrc copy as #49, grid size 240,240,240, pixel 2.1, shown at
    7063 level 0.0467, step 1, values float32 
    7064 Opened PflB_new.mrc copy as #50, grid size 240,240,240, pixel 2.1, shown at
    7065 level 0.0467, step 1, values float32 
    7066 Opened PflB_new.mrc copy as #51, grid size 240,240,240, pixel 2.1, shown at
    7067 level 0.0467, step 1, values float32 
    7068 Opened PflB_new.mrc copy as #54, grid size 240,240,240, pixel 2.1, shown at
    7069 level 0.0467, step 1, values float32 
    7070 Opened PflB_new.mrc copy as #55, grid size 240,240,240, pixel 2.1, shown at
    7071 level 0.0467, step 1, values float32 
    7072 Opened PflB_new.mrc copy as #56, grid size 240,240,240, pixel 2.1, shown at
    7073 level 0.0467, step 1, values float32 
    7074 Opened PflB_new.mrc copy as #57, grid size 240,240,240, pixel 2.1, shown at
    7075 level 0.0467, step 1, values float32 
    7076 Opened Top-cage.mrc copy as #58, grid size 240,240,240, pixel 2.1, shown at
    7077 level 0.143, step 1, values float32 
    7078 Opened Top-cage.mrc copy as #59, grid size 240,240,240, pixel 2.1, shown at
    7079 level 0.143, step 1, values float32 
    7080 Opened Top-cage.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown at
    7081 level 0.143, step 1, values float32 
    7082 Opened Top-cage.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown at
    7083 level 0.143, step 1, values float32 
    7084 Opened Top-cage.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown at
    7085 level 0.143, step 1, values float32 
    7086 Opened Top-cage.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown at
    7087 level 0.143, step 1, values float32 
    7088 Opened Top-cage.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown at
    7089 level 0.143, step 1, values float32 
    7090 Opened Top-cage.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown at
    7091 level 0.143, step 1, values float32 
    7092 Opened Top-cage.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown at
    7093 level 0.143, step 1, values float32 
    7094 Opened Top-cage.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown at
    7095 level 0.143, step 1, values float32 
    7096 Opened Top-cage.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown at
    7097 level 0.143, step 1, values float32 
    7098 Opened Top-cage.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown at
    7099 level 0.143, step 1, values float32 
    7100 Opened Top-cage.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown at
    7101 level 0.143, step 1, values float32 
    7102 Opened Top-cage.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown at
    7103 level 0.143, step 1, values float32 
    7104 Opened Top-cage.mrc copy as #86, grid size 240,240,240, pixel 2.1, shown at
    7105 level 0.143, step 1, values float32 
    7106 Opened Top-cage.mrc copy as #121, grid size 240,240,240, pixel 2.1, shown at
    7107 level 0.143, step 1, values float32 
    7108 Opened Top-cage.mrc copy as #122, grid size 240,240,240, pixel 2.1, shown at
    7109 level 0.143, step 1, values float32 
    7110 Opened Top-cage.mrc copy as #123, grid size 240,240,240, pixel 2.1, shown at
    7111 level 0.143, step 1, values float32 
    7112 Opened MotB_new.mrc copy as #124, grid size 240,240,240, pixel 2.1, shown at
    7113 level 0.0995, step 1, values float32 
    7114 Opened MotB_new.mrc copy as #125, grid size 240,240,240, pixel 2.1, shown at
    7115 level 0.0995, step 1, values float32 
    7116 Opened MotB_new.mrc copy as #126, grid size 240,240,240, pixel 2.1, shown at
    7117 level 0.0995, step 1, values float32 
    7118 Opened MotB_new.mrc copy as #127, grid size 240,240,240, pixel 2.1, shown at
    7119 level 0.0995, step 1, values float32 
    7120 Opened MotB_new.mrc copy as #128, grid size 240,240,240, pixel 2.1, shown at
    7121 level 0.0995, step 1, values float32 
    7122 Opened MotB_new.mrc copy as #129, grid size 240,240,240, pixel 2.1, shown at
    7123 level 0.0995, step 1, values float32 
    7124 Opened MotB_new.mrc copy as #130, grid size 240,240,240, pixel 2.1, shown at
    7125 level 0.0995, step 1, values float32 
    7126 Opened MotB_new.mrc copy as #131, grid size 240,240,240, pixel 2.1, shown at
    7127 level 0.0995, step 1, values float32 
    7128 Opened MotB_new.mrc copy as #132, grid size 240,240,240, pixel 2.1, shown at
    7129 level 0.0995, step 1, values float32 
    7130 Opened MotB_new.mrc copy as #133, grid size 240,240,240, pixel 2.1, shown at
    7131 level 0.0995, step 1, values float32 
    7132 Opened MotB_new.mrc copy as #134, grid size 240,240,240, pixel 2.1, shown at
    7133 level 0.0995, step 1, values float32 
    7134 Opened MotB_new.mrc copy as #135, grid size 240,240,240, pixel 2.1, shown at
    7135 level 0.0995, step 1, values float32 
    7136 Opened MotB_new.mrc copy as #136, grid size 240,240,240, pixel 2.1, shown at
    7137 level 0.0995, step 1, values float32 
    7138 Opened MotB_new.mrc copy as #137, grid size 240,240,240, pixel 2.1, shown at
    7139 level 0.0995, step 1, values float32 
    7140 Opened MotB_new.mrc copy as #138, grid size 240,240,240, pixel 2.1, shown at
    7141 level 0.0995, step 1, values float32 
    7142 Opened MotB_new.mrc copy as #139, grid size 240,240,240, pixel 2.1, shown at
    7143 level 0.0995, step 1, values float32 
    7144 Opened MotB_new.mrc copy as #140, grid size 240,240,240, pixel 2.1, shown at
    7145 level 0.0995, step 1, values float32 
    7146 Opened MotB_new.mrc copy as #141, grid size 240,240,240, pixel 2.1, shown at
    7147 level 0.0995, step 1, values float32 
    7148 Opened volume sum as #144, grid size 642,583,278, pixel 2.1, shown at level
    7149 0.162, step 1, values float32 
    7150 Opened FlgY-with-joints.mrc copy as #143, grid size 220,220,220, pixel 4.3,
    7151 shown at level 2.81, step 1, values float32 
    7152 Opened FlgY-with-joints.mrc copy as #145, grid size 220,220,220, pixel 4.3,
    7153 shown at level 2.81, step 1, values float32 
    7154 Opened PilM-region.mrc gaussian copy as #146, grid size 160,160,200, pixel
    7155 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    7156 Opened PilM-region.mrc gaussian copy as #147, grid size 160,160,200, pixel
    7157 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    7158 Opened PilM-region.mrc gaussian copy as #148, grid size 160,160,200, pixel
    7159 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    7160 Opened PilM-region.mrc gaussian copy as #149, grid size 160,160,200, pixel
    7161 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    7162 Opened PilM-region.mrc gaussian copy as #150, grid size 160,160,200, pixel
    7163 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    7164 Opened PilM-region.mrc gaussian copy as #151, grid size 160,160,200, pixel
    7165 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    7166 Opened PilM-region.mrc gaussian copy as #152, grid size 160,160,200, pixel
    7167 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    7168 Opened PilM-region.mrc gaussian copy as #153, grid size 160,160,200, pixel
    7169 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    7170 Opened PilM-region.mrc gaussian copy as #154, grid size 160,160,200, pixel
    7171 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    7172 Opened PilM-region.mrc gaussian copy as #155, grid size 160,160,200, pixel
    7173 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    7174 Opened PilM-region.mrc gaussian copy as #156, grid size 160,160,200, pixel
    7175 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    7176 Opened PilM-region.mrc gaussian copy as #157, grid size 160,160,200, pixel
    7177 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    7178 Opened PilM-region.mrc gaussian copy as #158, grid size 160,160,200, pixel
    7179 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    7180 Opened PilM-region.mrc gaussian copy as #159, grid size 160,160,200, pixel
    7181 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    7182 Opened PilM-region.mrc gaussian copy as #160, grid size 160,160,200, pixel
    7183 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    7184 Opened PilM-region.mrc gaussian copy as #161, grid size 160,160,200, pixel
    7185 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    7186 Opened PilM-region.mrc gaussian copy as #162, grid size 160,160,200, pixel
    7187 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    7188 Opened PilM-region.mrc gaussian copy as #163, grid size 160,160,200, pixel
    7189 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    7190 Opened PilM-region.mrc gaussian copy as #164, grid size 160,160,200, pixel
    7191 4.3,4.3,4.3, shown at level 0.00437, step 1, values float32 
    7192 Opened 1x_Cage-units.mrc as #89, grid size 240,240,240, pixel 2.1, shown at
    7193 level 0.143, step 1, values float32 
    7194 Opened PilNO_PL-ring.mrc as #95, grid size 120,120,120, pixel 8.59, shown at
    7195 level 6.53e-05, step 1, values float32 
    7196 Opened New_PL-ring.mrc as #96, grid size 240,240,240, pixel 4.3, shown at
    7197 level 0.0141, step 1, values float32 
    7198 Opened Outer-ring-near-PL.mrc as #97, grid size 240,240,240, pixel 4.3, shown
    7199 at level 0.0141, step 1, values float32 
    7200 Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
    7201 shown at level 0.0148, step 1, values float32 
    7202 Opened Hpwt-L0.08-rev.mrc as #142, grid size 240,240,240, pixel 4.3, shown at
    7203 level 0.0425, step 1, values float32 
    7204 Opened New_PL-ring.mrc gaussian as #165, grid size 240,240,240, pixel 4.3,
    7205 shown at level 0.0105, step 1, values float32 
    7206 Opened FlgY-with-joints.mrc copy as #173, grid size 220,220,220, pixel 4.3,
    7207 shown at level 2.81, step 1, values float32 
    7208 Opened Hp-C1-4.296A-msk.mrc as #174, grid size 220,220,220, pixel 4.3, shown
    7209 at level 0.0868, step 1, values float32 
    7210 opened ChimeraX session 
    7211 
    72123434> open /Users/shoichitachiyama/Desktop/Chimera-Dec11_2024/Cage-spoke.mrc
    72133435