Changes between Initial Version and Version 1 of Ticket #16422


Ignore:
Timestamp:
Dec 5, 2024, 10:37:08 AM (11 months ago)
Author:
pett
Comment:

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #16422

    • Property Component Unassigned → Window Toolkit
    • Property Owner set to Tom Goddard
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → Crash on Mac waking from sleep

  • Ticket #16422 – Description

    initial v1  
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    1793     "size" : 294912,
    1794     "uuid" : "1a1ce00a-89cd-36ba-9678-5038aedd0d8d",
    1795     "path" : "\/usr\/lib\/system\/libdispatch.dylib",
    1796     "name" : "libdispatch.dylib"
    1797   },
    1798   {
    1799     "source" : "P",
    1800     "arch" : "arm64e",
    1801     "base" : 6646935552,
    1802     "CFBundleShortVersionString" : "6.9",
    1803     "CFBundleIdentifier" : "com.apple.CoreFoundation",
    1804     "size" : 5083136,
    1805     "uuid" : "55720ee0-d8c3-33a1-9854-8e61a6f44895",
    1806     "path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
    1807     "name" : "CoreFoundation",
    1808     "CFBundleVersion" : "2602"
    1809   },
    1810   {
    1811     "source" : "P",
    1812     "arch" : "arm64e",
    1813     "base" : 6823043072,
    1814     "CFBundleShortVersionString" : "2.1.1",
    1815     "CFBundleIdentifier" : "com.apple.HIToolbox",
    1816     "size" : 2899968,
    1817     "uuid" : "4166f6cb-b599-306c-8568-823bd29a74c3",
    1818     "path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
    1819     "name" : "HIToolbox"
    1820   },
    1821   {
    1822     "source" : "P",
    1823     "arch" : "arm64e",
    1824     "base" : 6642798592,
    1825     "size" : 562440,
    1826     "uuid" : "f635824e-318b-3f0c-842c-c369737f2b68",
    1827     "path" : "\/usr\/lib\/dyld",
    1828     "name" : "dyld"
    1829   },
    1830   {
    1831     "size" : 0,
    1832     "source" : "A",
    1833     "base" : 0,
    1834     "uuid" : "00000000-0000-0000-0000-000000000000"
    1835   },
    1836   {
    1837     "source" : "P",
    1838     "arch" : "arm64e",
    1839     "base" : 6642466816,
    1840     "size" : 331276,
    1841     "uuid" : "5c6386bd-f308-3370-bce9-63d1a89dab87",
    1842     "path" : "\/usr\/lib\/libobjc.A.dylib",
    1843     "name" : "libobjc.A.dylib"
    1844   },
    1845   {
    1846     "source" : "P",
    1847     "arch" : "arm64e",
    1848     "base" : 6665109504,
    1849     "CFBundleShortVersionString" : "6.9",
    1850     "CFBundleIdentifier" : "com.apple.Foundation",
    1851     "size" : 12967936,
    1852     "uuid" : "c6949f67-60f6-3735-b583-bf1e069a8a0b",
    1853     "path" : "\/System\/Library\/Frameworks\/Foundation.framework\/Versions\/C\/Foundation",
    1854     "name" : "Foundation",
    1855     "CFBundleVersion" : "2602"
    1856   },
    1857   {
    1858     "source" : "P",
    1859     "arch" : "arm64e",
    1860     "base" : 6643384320,
    1861     "size" : 307200,
    1862     "uuid" : "987af6aa-ab54-39ce-84cf-c6d2d1dc9464",
    1863     "path" : "\/usr\/lib\/system\/libxpc.dylib",
    1864     "name" : "libxpc.dylib"
    1865   }
     71[deleted to fit within ticket limits]
    186672],
    186773  "sharedCache" : {
    … …  
    31171323> ui mousemode right "translate selected models"> view matrix models
    31181324> #3,0.57049,0.67618,0.46618,257.51,-0.47052,0.73431,-0.4893,347.5,-0.67317,0.05979,0.73706,322.97>
    3119 > view matrix models
    3120 > #3,0.57049,0.67618,0.46618,259.1,-0.47052,0.73431,-0.4893,342.4,-0.67317,0.05979,0.73706,325.89>
    3121 > view matrix models
    3122 > #3,0.57049,0.67618,0.46618,263.37,-0.47052,0.73431,-0.4893,342.64,-0.67317,0.05979,0.73706,327.49>
    3123 > view matrix models
    3124 > #3,0.57049,0.67618,0.46618,262.68,-0.47052,0.73431,-0.4893,346.65,-0.67317,0.05979,0.73706,329>
    3125 > ui mousemode right "rotate selected models"> view matrix models
    3126 > #3,0.57248,0.67477,0.46578,262.74,-0.49429,0.73727,-0.46055,345.97,-0.65417,0.033424,0.75561,329.4>
    3127 > view matrix models
    3128 > #3,0.63127,0.69884,0.33633,264.6,-0.52003,0.70313,-0.48495,345.94,-0.57539,0.13123,0.80729,329.74>
    3129 > ui mousemode right "translate selected models"> view matrix models
    3130 > #3,0.63127,0.69884,0.33633,266.39,-0.52003,0.70313,-0.48495,345.55,-0.57539,0.13123,0.80729,331.04>
    3131 > view matrix models
    3132 > #3,0.63127,0.69884,0.33633,268.56,-0.52003,0.70313,-0.48495,343.51,-0.57539,0.13123,0.80729,331.68>
    3133 > ui mousemode right "rotate selected models"> view matrix models
    3134 > #3,0.6514,0.67692,0.34272,269.04,-0.52428,0.7281,-0.4416,342.92,-0.54846,0.10797,0.82918,332.18>
    3135 > view matrix models
    3136 > #3,0.59614,0.71527,0.3647,267.58,-0.54988,0.69472,-0.46367,342.86,-0.58502,0.075871,0.80746,331.91>
    3137 > view matrix models
    3138 > #3,0.71756,0.63247,0.2917,270.97,-0.45126,0.74119,-0.49699,344.58,-0.53053,0.22499,0.81726,331.73>
    3139 > view matrix models
    3140 > #3,0.7144,0.66742,0.2102,271.25,-0.51692,0.70585,-0.48432,343.54,-0.47161,0.23735,0.84927,332.49>
    3141 > view matrix models
    3142 > #3,0.73441,0.65932,0.16107,272.04,-0.52134,0.69996,-0.48813,343.53,-0.43457,0.27451,0.85778,332.83>
    3143 > ui mousemode right "translate selected models"> view matrix models
    3144 > #3,0.73441,0.65932,0.16107,274.91,-0.52134,0.69996,-0.48813,343.26,-0.43457,0.27451,0.85778,335.65>
    3145 > view matrix models
    3146 > #3,0.73441,0.65932,0.16107,274.57,-0.52134,0.69996,-0.48813,341.68,-0.43457,0.27451,0.85778,338>
    3147 > view matrix models
    3148 > #3,0.73441,0.65932,0.16107,275.14,-0.52134,0.69996,-0.48813,341.4,-0.43457,0.27451,0.85778,337.25>
    3149 > ui mousemode right "rotate selected models"> view matrix models
    3150 > #3,0.7541,0.63707,0.15963,275.68,-0.50041,0.71476,-0.48858,341.68,-0.42536,0.28856,0.85779,337.31>
    3151 > view matrix models
    3152 > #3,0.74291,0.63667,0.20673,275.12,-0.46536,0.71322,-0.52417,342.6,-0.48117,0.29321,0.82614,336.49>
    3153 > view matrix models
    3154 > #3,0.80342,0.55155,0.22432,276.74,-0.39022,0.77229,-0.50129,343.37,-0.44972,0.31521,0.8357,336.83>
    3155 > ui mousemode right "translate selected models"> view matrix models
    3156 > #3,0.80342,0.55155,0.22432,271.95,-0.39022,0.77229,-0.50129,347.63,-0.44972,0.31521,0.8357,338.54>
    3157 > view matrix models
    3158 > #3,0.80342,0.55155,0.22432,271.53,-0.39022,0.77229,-0.50129,347.65,-0.44972,0.31521,0.8357,339.94>
    3159 > view matrix models
    3160 > #3,0.80342,0.55155,0.22432,271.45,-0.39022,0.77229,-0.50129,347.37,-0.44972,0.31521,0.8357,339.41>
    3161 > ui mousemode right "rotate selected models"> view matrix models
    3162 > #3,0.87916,0.44751,0.16375,274.06,-0.32398,0.81332,-0.48327,348.15,-0.34945,0.37182,0.86002,340.65>
    3163 > view matrix models
    3164 > #3,0.8903,0.43345,0.1396,274.55,-0.32015,0.81379,-0.48502,348.23,-0.32383,0.38712,0.86329,340.98>
    3165 > ui mousemode right "translate selected models"> view matrix models
    3166 > #3,0.8903,0.43345,0.1396,274.05,-0.32015,0.81379,-0.48502,351.03,-0.32383,0.38712,0.86329,342.82>
    3167 > ui mousemode right "rotate selected models"> view matrix models
    3168 > #3,0.90023,0.42579,0.091041,274.64,-0.30651,0.76821,-0.56205,352.19,-0.30925,0.47807,0.82208,342.72>
    3169 > ui mousemode right "translate selected models"> view matrix models
    3170 > #3,0.90023,0.42579,0.091041,276.29,-0.30651,0.76821,-0.56205,352.94,-0.30925,0.47807,0.82208,345.52>
    3171 > view matrix models
    3172 > #3,0.90023,0.42579,0.091041,276.64,-0.30651,0.76821,-0.56205,351.93,-0.30925,0.47807,0.82208,348.52>
    3173 > view matrix models
    3174 > #3,0.90023,0.42579,0.091041,276.5,-0.30651,0.76821,-0.56205,353.45,-0.30925,0.47807,0.82208,349.29>
    3175 > ui mousemode right "rotate selected models"> view matrix models
    3176 > #3,0.90732,0.40924,0.096353,276.71,-0.27468,0.75051,-0.60107,354.45,-0.3183,0.5189,0.79337,349.04>
    3177 > ui mousemode right "translate selected models"> view matrix models
    3178 > #3,0.90732,0.40924,0.096353,276.03,-0.27468,0.75051,-0.60107,353.78,-0.3183,0.5189,0.79337,350.72>
    3179 > view matrix models
    3180 > #3,0.90732,0.40924,0.096353,275.78,-0.27468,0.75051,-0.60107,353.7,-0.3183,0.5189,0.79337,350.42>
    3181 > ui mousemode right "rotate selected models"> view matrix models
    3182 > #3,0.86593,0.44239,0.23337,273.76,-0.19734,0.73091,-0.65332,355.65,-0.4596,0.51967,0.72021,348.36>
    3183 > view matrix models
    3184 > #3,0.87467,0.42973,0.22423,274.08,-0.18031,0.71787,-0.67242,356.2,-0.44993,0.54772,0.70538,348.44>
    3185 > ui mousemode right "translate selected models"> view matrix models
    3186 > #3,0.87467,0.42973,0.22423,274.15,-0.18031,0.71787,-0.67242,356.66,-0.44993,0.54772,0.70538,349.67>
    3187 > view matrix models
    3188 > #3,0.87467,0.42973,0.22423,273.1,-0.18031,0.71787,-0.67242,357.41,-0.44993,0.54772,0.70538,350.66>
    3189 > ui mousemode right "rotate selected models"> view matrix models
    3190 > #3,0.8751,0.43332,0.2155,273.15,-0.20188,0.73155,-0.65121,356.76,-0.43983,0.52637,0.72766,350.84>
    3191 > ui mousemode right "translate selected models"> view matrix models
    3192 > #3,0.8751,0.43332,0.2155,271.79,-0.20188,0.73155,-0.65121,356.91,-0.43983,0.52637,0.72766,350.01>
    3193 > view matrix models
    3194 > #3,0.8751,0.43332,0.2155,271.87,-0.20188,0.73155,-0.65121,357.52,-0.43983,0.52637,0.72766,349.85>
    3195 > select clear> select #12 models selected 
    3196 > select clear> hide #!1 models> select /A:7826 atoms, 5 bonds, 1 residue, 1
    3197 > model selected 
    3198 > select /A:6409 atoms, 8 bonds, 1 residue, 1 model selected 
    3199 > select add /A:77818 atoms, 16 bonds, 2 residues, 1 model selected 
    3200 > select clearDrag select of 3 residues 
    3201 > select up63 atoms, 62 bonds, 8 residues, 1 model selected 
    3202 > select up9810 atoms, 10032 bonds, 1233 residues, 1 model selected 
    3203 > select down63 atoms, 62 bonds, 8 residues, 1 model selected 
    3204 > select down23 atoms, 3 residues, 1 model selected 
    3205 > select up63 atoms, 62 bonds, 8 residues, 1 model selected 
    3206 > select down23 atoms, 3 residues, 1 model selected 
    3207 > select #3:200-300832 atoms, 855 bonds, 101 residues, 1 model selected 
    3208 > select #3:626-7831252 atoms, 1269 bonds, 158 residues, 1 model selected 
    3209 > volume #1 level 0.003653> volume #1 level 0.006521> volume #1 level
    3210 > 0.007524> fitmap sel inMap #1Fit molecule AlphaFold F8WHL2 (#3) to map
    3211 > postprocess.mrc (#1) using 1252 atoms 
    3212 average map value = 0.008076, steps = 68 
    3213 shifted from previous position = 0.881 
    3214 rotated from previous position = 5.6 degrees 
    3215 atoms outside contour = 530, contour level = 0.0075244 
    3216  
    3217 Position of AlphaFold F8WHL2 (#3) relative to postprocess.mrc (#1)
    3218 coordinates: 
    3219 Matrix rotation and translation 
    3220 0.91479768 0.37496522 0.15015414 272.72163633 
    3221 -0.20072021 0.74461830 -0.63659640 357.53578289 
    3222 -0.35050903 0.55221794 0.75643820 352.78881648 
    3223 Axis 0.84159616 0.35443398 -0.40754442 
    3224 Axis point 0.00000000 -509.89936941 647.89739820 
    3225 Rotation angle (degrees) 44.93349247 
    3226 Shift along axis 212.46720010 
    3227  
    3228 > volume #1 level 0.008672> volume #1 level 0.009102> select clear> select
    3229 > /A:6037 atoms, 7 bonds, 1 residue, 1 model selected 
    3230 Drag select of 598 residues 
    3231 > ui tool show "Fit in Map"> fitmap sel inMap #1 moveWholeMolecules falseFit
    3232 > molecule AlphaFold F8WHL2 (#3) to map postprocess.mrc (#1) using 4818 atoms 
    3233 average map value = 0.007747, steps = 96 
    3234 shifted from previous position = 11.7 
    3235 rotated from previous position = 23.8 degrees 
    3236 atoms outside contour = 3249, contour level = 0.0091018 
    3237  
    3238 > show #!1 models> select clear> ui tool show AlphaFoldFetching compressed
    3239 > O55029 UniProt info from https://www.uniprot.org/uniprot/O55029.xml 
    3240 > alphafold match O55029Fetching compressed AlphaFold O55029 from
    3241 > https://alphafold.ebi.ac.uk/files/AF-O55029-F1-model_v4.cif 
    3242 1 AlphaFold model found using UniProt identifier: O55029 (UniProt O55029) 
    3243 | Sequence Similarity 
    3244 --- 
    3245 AlphaFold Model| Query Sequence| Identity %| Coverage % 
    3246 O55029 | O55029 | 100.0 | 100.0   
    3247 Opened 1 AlphaFold model 
    3248 Drag select of 905 residues 
    3249 > rename #3 "acop F8WHL2"> rename #4 "b1cop O55029"> ui mousemode right
    3250 > "translate selected models"> view matrix models
    3251 > #4,1,0,0,370.38,0,1,0,247.17,0,0,1,216.75> view matrix models
    3252 > #4,1,0,0,335.12,0,1,0,270.36,0,0,1,361.07> view matrix models
    3253 > #4,1,0,0,277,0,1,0,291.15,0,0,1,334.99> ui mousemode right "rotate selected
    3254 > models"> view matrix models
    3255 > #4,0.90253,0.38282,0.1972,270.62,0.033459,-0.51889,0.85418,271.85,0.42933,-0.76433,-0.48113,377.38>
    3256 > view matrix models
    3257 > #4,0.77302,-0.058303,-0.63169,290.22,0.58343,-0.32566,0.74401,280.54,-0.2491,-0.94369,-0.21773,363.43>
    3258 > view matrix models
    3259 > #4,0.074915,0.65545,-0.75151,284.66,0.23799,0.7201,0.65178,277.9,0.96837,-0.22768,-0.10205,373.44>
    3260 > view matrix models
    3261 > #4,0.24709,0.54101,-0.8039,288,0.57248,-0.75086,-0.32936,307.53,-0.7818,-0.37884,-0.49524,363.79>
    3262 > view matrix models
    3263 > #4,0.45878,-0.60051,-0.65491,287.84,0.77685,-0.086693,0.62369,285.45,-0.43131,-0.79491,0.42673,345.23>
    3264 > view matrix models
    3265 > #4,-0.15329,-0.58727,-0.79475,284.45,0.83983,-0.50125,0.20841,296.9,-0.52076,-0.6355,0.57004,340.5>
    3266 > view matrix models
    3267 > #4,0.11761,-0.10952,-0.987,291.77,0.62392,-0.76509,0.15924,295.98,-0.77258,-0.63454,-0.021653,352.39>
    3268 > view matrix models
    3269 > #4,0.34012,-0.0025252,-0.94038,292.99,0.60524,-0.76477,0.22096,294.24,-0.71973,-0.6443,-0.25858,358.87>
    3270 > view matrix models
    3271 > #4,0.32988,-0.012843,-0.94393,292.98,0.59671,-0.77198,0.21904,294.19,-0.73152,-0.63551,-0.247,358.45>
    3272 > ui mousemode right "translate selected models"> view matrix models
    3273 > #4,0.32988,-0.012843,-0.94393,312.66,0.59671,-0.77198,0.21904,304.98,-0.73152,-0.63551,-0.247,365.85>
    3274 > fitmap sel inMap #1Fit molecule b1cop O55029 (#4) to map postprocess.mrc
    3275 > (#1) using 7214 atoms 
    3276 average map value = 0.008522, steps = 168 
    3277 shifted from previous position = 20.5 
    3278 rotated from previous position = 49.4 degrees 
    3279 atoms outside contour = 3879, contour level = 0.0091018 
    3280  
    3281 Position of b1cop O55029 (#4) relative to postprocess.mrc (#1) coordinates: 
    3282 Matrix rotation and translation 
    3283 -0.17500586 -0.17837291 -0.96827478 300.31538503 
    3284 -0.01101922 -0.98303557 0.18308371 289.63776415 
    3285 -0.98450572 0.04271036 0.17007146 350.80591372 
    3286 Axis -0.64087816 0.07410279 0.76405756 
    3287 Axis point 287.13093608 140.83628611 0.00000000 
    3288 Rotation angle (degrees) 173.71256043 
    3289 Shift along axis 97.03330679 
    3290  
    3291 > select clear> volume #1 level 0.005373> volume #1 level 0.003509> volume #1
    3292 > level 0.01125> ui tool show AlphaFoldFetching compressed Q9JIF7 UniProt info
    3293 > from https://www.uniprot.org/uniprot/Q9JIF7.xml 
    3294 > alphafold match Q9JIF7Fetching compressed AlphaFold Q9JIF7 from
    3295 > https://alphafold.ebi.ac.uk/files/AF-Q9JIF7-F1-model_v4.cif 
    3296 1 AlphaFold model found using UniProt identifier: Q9JIF7 (UniProt Q9JIF7) 
    3297 | Sequence Similarity 
    3298 --- 
    3299 AlphaFold Model| Query Sequence| Identity %| Coverage % 
    3300 Q9JIF7 | Q9JIF7 | 100.0 | 100.0   
    3301 Opened 1 AlphaFold model 
    3302 > select add #57501 atoms, 7619 bonds, 953 residues, 1 model selected 
    3303 > ui mousemode right "translate selected models"> view matrix models
    3304 > #5,1,0,0,271.36,0,1,0,317.01,0,0,1,50.878> view matrix models
    3305 > #5,1,0,0,318.9,0,1,0,281.77,0,0,1,334.98> view matrix models
    3306 > #5,1,0,0,278.73,0,1,0,199.54,0,0,1,360.27> ui mousemode right "rotate
    3307 > selected models"> view matrix models
    3308 > #5,0.88745,-0.36435,-0.28227,281.8,0.44595,0.52412,0.72555,194.37,-0.11641,-0.76977,0.62761,364.88>
    3309 > view matrix models
    3310 > #5,0.67107,0.33535,0.66121,275.67,-0.73977,0.24385,0.62712,201.35,0.049071,-0.90999,0.41172,365.68>
    3311 > view matrix models
    3312 > #5,0.017555,0.80719,0.59003,278.07,-0.79428,0.36969,-0.48212,207.72,-0.60729,-0.46019,0.64763,366.37>
    3313 > view matrix models
    3314 > #5,-0.10559,0.20105,0.97387,277.94,-0.90536,-0.42452,-0.010521,207.48,0.41131,-0.88281,0.22685,364.93>
    3315 > view matrix models
    3316 > #5,-0.55224,-0.11726,0.8254,281.74,-0.42401,0.89195,-0.15697,202.76,-0.71781,-0.43666,-0.54229,373.73>
    3317 > view matrix models
    3318 > #5,-0.594,-0.055194,0.80257,281.92,-0.10836,0.99404,-0.01184,200.15,-0.79713,-0.094001,-0.59644,373.58>
    3319 > view matrix models
    3320 > #5,-0.48192,-0.54854,0.68327,283.28,-0.30994,0.8361,0.45263,198.82,-0.81957,0.0063597,-0.57294,373.31>
    3321 > view matrix models
    3322 > #5,-0.16222,-0.5084,0.84571,280.7,-0.39977,0.81743,0.41472,199.52,-0.90215,-0.27081,-0.33585,373.02>
    3323 > view matrix models
    3324 > #5,-0.1128,-0.50446,0.85603,280.39,-0.47173,0.78544,0.4007,200.03,-0.8745,-0.35862,-0.32656,373.05>
    3325 > view matrix models
    3326 > #5,0.025474,-0.37173,0.92799,278.98,-0.34416,0.86829,0.35726,199.46,-0.93857,-0.32848,-0.10581,372>
    3327 > view matrix models
    3328 > #5,0.33949,-0.64321,0.68632,279.53,-0.36106,0.58464,0.72652,198.11,-0.86855,-0.49445,-0.033758,371.66>
    3329 > ui mousemode right "translate selected models"> view matrix models
    3330 > #5,0.33949,-0.64321,0.68632,276.35,-0.36106,0.58464,0.72652,288.45,-0.86855,-0.49445,-0.033758,402.83>
    3331 > view matrix models
    3332 > #5,0.33949,-0.64321,0.68632,250.38,-0.36106,0.58464,0.72652,309,-0.86855,-0.49445,-0.033758,398.1>
    3333 > view matrix models
    3334 > #5,0.33949,-0.64321,0.68632,285.01,-0.36106,0.58464,0.72652,319.3,-0.86855,-0.49445,-0.033758,353.89>
    3335 > view matrix models
    3336 > #5,0.33949,-0.64321,0.68632,283.3,-0.36106,0.58464,0.72652,331.55,-0.86855,-0.49445,-0.033758,349.45>
    3337 > hide #5 models> hide #4 models> view matrix models
    3338 > #5,0.33949,-0.64321,0.68632,279.14,-0.36106,0.58464,0.72652,302.8,-0.86855,-0.49445,-0.033758,343.44>
    3339 > show #5 models> show #4 models> hide #3 models> hide #4 models> view matrix
    3340 > models
    3341 > #5,0.33949,-0.64321,0.68632,270.08,-0.36106,0.58464,0.72652,305.66,-0.86855,-0.49445,-0.033758,339.27>
    3342 > view matrix models
    3343 > #5,0.33949,-0.64321,0.68632,273.26,-0.36106,0.58464,0.72652,296.36,-0.86855,-0.49445,-0.033758,339.61>
    3344 > ui mousemode right "rotate selected models"> view matrix models
    3345 > #5,0.1583,-0.75472,0.63666,274.7,-0.22837,0.59932,0.76724,295.45,-0.96062,-0.26685,-0.077487,339.75>
    3346 > view matrix models
    3347 > #5,0.31702,-0.77002,0.55368,274.45,-0.044004,0.57122,0.81961,294.32,-0.9474,-0.2842,0.14721,338.42>
    3348 > view matrix models
    3349 > #5,-0.1688,-0.83643,0.52143,277.15,0.15518,0.49987,0.85209,293.35,-0.97336,0.22475,0.045415,337.89>
    3350 > view matrix models
    3351 > #5,-0.29859,-0.756,0.5825,277.22,-0.055259,0.62302,0.78026,294.48,-0.95278,0.20079,-0.2278,339.43>
    3352 > view matrix models
    3353 > #5,-0.31587,-0.77827,0.54269,277.59,0.0031861,0.5711,0.82087,294.09,-0.9488,0.26102,-0.17791,338.97>
    3354 > ui mousemode right "translate selected models"> view matrix models
    3355 > #5,-0.31587,-0.77827,0.54269,293.23,0.0031861,0.5711,0.82087,320.12,-0.9488,0.26102,-0.17791,348.52>
    3356 > ui mousemode right "rotate selected models"> view matrix models
    3357 > #5,-0.22491,-0.76691,0.60105,292.43,-0.062203,0.62689,0.77662,320.56,-0.97239,0.13728,-0.1887,349>
    3358 > view matrix models
    3359 > #5,-0.22093,-0.79312,0.56759,292.67,-0.096038,0.59683,0.7966,320.68,-0.97055,0.12149,-0.20803,349.14>
    3360 > fitmap sel inMap #1Fit molecule AlphaFold Q9JIF7 (#5) to map postprocess.mrc
    3361 > (#1) using 7501 atoms 
    3362 average map value = 0.00647, steps = 148 
    3363 shifted from previous position = 5.87 
    3364 rotated from previous position = 8.11 degrees 
    3365 atoms outside contour = 6135, contour level = 0.011253 
    3366  
    3367 Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1)
    3368 coordinates: 
    3369 Matrix rotation and translation 
    3370 -0.12743314 -0.78566653 0.60538327 287.87538541 
    3371 -0.18888952 0.61841267 0.76281486 319.45283965 
    3372 -0.97369479 -0.01714266 -0.22721044 353.10812983 
    3373 Axis -0.41943118 0.84916750 0.32092374 
    3374 Axis point 330.24827580 0.00000000 -43.29109963 
    3375 Rotation angle (degrees) 111.59943904 
    3376 Shift along axis 263.84583665 
    3377  
    3378 > view matrix models
    3379 > #5,-0.11909,-0.79329,0.59708,287.9,-0.21644,0.60764,0.76415,319.6,-0.969,-0.03823,-0.24407,353.23>
    3380 > view matrix models
    3381 > #5,-0.13997,-0.7806,0.60915,287.9,-0.23845,0.62368,0.74443,319.79,-0.96101,-0.041054,-0.27343,353.37>
    3382 > fitmap sel inMap #1Fit molecule AlphaFold Q9JIF7 (#5) to map postprocess.mrc
    3383 > (#1) using 7501 atoms 
    3384 average map value = 0.00647, steps = 84 
    3385 shifted from previous position = 0.25 
    3386 rotated from previous position = 3.09 degrees 
    3387 atoms outside contour = 6133, contour level = 0.011253 
    3388  
    3389 Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1)
    3390 coordinates: 
    3391 Matrix rotation and translation 
    3392 -0.12796009 -0.78606814 0.60475043 287.89645555 
    3393 -0.18929672 0.61791074 0.76312062 319.45704475 
    3394 -0.97354659 -0.01682829 -0.22786803 353.09674124 
    3395 Axis -0.41957740 0.84905276 0.32103617 
    3396 Axis point 330.19750182 0.00000000 -43.20868706 
    3397 Rotation angle (degrees) 111.65141172 
    3398 Shift along axis 263.79786166 
    3399  
    3400 > view matrix models
    3401 > #5,-0.013632,-0.77278,0.63452,287.14,-0.21506,0.622,0.75291,319.63,-0.97651,-0.1262,-0.17467,353.07>
    3402 > view matrix models
    3403 > #5,-0.041711,-0.77488,0.63073,287.3,-0.1704,0.62755,0.7597,319.36,-0.98449,-0.075789,-0.15822,352.89>
    3404 > ui mousemode right "translate selected models"> view matrix models
    3405 > #5,-0.041711,-0.77488,0.63073,290,-0.1704,0.62755,0.7597,317.67,-0.98449,-0.075789,-0.15822,354.39>
    3406 > view matrix models
    3407 > #5,-0.041711,-0.77488,0.63073,290,-0.1704,0.62755,0.7597,318.98,-0.98449,-0.075789,-0.15822,355>
    3408 > view matrix models
    3409 > #5,-0.041711,-0.77488,0.63073,288.25,-0.1704,0.62755,0.7597,313.73,-0.98449,-0.075789,-0.15822,356.75>
    3410 > view matrix models
    3411 > #5,-0.041711,-0.77488,0.63073,287.59,-0.1704,0.62755,0.7597,314.9,-0.98449,-0.075789,-0.15822,356.71>
    3412 > ui mousemode right "rotate selected models"> view matrix models
    3413 > #5,-0.055916,-0.77902,0.6245,287.71,-0.13246,0.62573,0.76871,314.67,-0.98961,-0.03974,-0.13818,356.53>
    3414 > ui mousemode right "translate selected models"> view matrix models
    3415 > #5,-0.055916,-0.77902,0.6245,286.88,-0.13246,0.62573,0.76871,316.68,-0.98961,-0.03974,-0.13818,356.49>
    3416 > view matrix models
    3417 > #5,-0.055916,-0.77902,0.6245,286.02,-0.13246,0.62573,0.76871,317.58,-0.98961,-0.03974,-0.13818,355.6>
    3418 > ui mousemode right "translate selected models"> view matrix models
    3419 > #5,-0.055916,-0.77902,0.6245,282.11,-0.13246,0.62573,0.76871,313.86,-0.98961,-0.03974,-0.13818,352.7>
    3420 > ui mousemode right "rotate selected models"> view matrix models
    3421 > #5,-0.12597,-0.76708,0.62907,282.39,-0.15988,0.64153,0.75025,314.06,-0.97906,-0.0060659,-0.20346,352.94>
    3422 > view matrix models
    3423 > #5,-0.11811,-0.76841,0.62896,282.36,-0.16267,0.63981,0.75112,314.07,-0.97959,-0.013602,-0.20056,352.94>
    3424 > hide #!1 models> select clear> select #5/A:2486 atoms, 5 bonds, 1 residue, 1
    3425 > model selected 
    3426 > select add #5/A:61913 atoms, 11 bonds, 2 residues, 1 model selected 
    3427 > select #3:248-6192987 atoms, 3052 bonds, 372 residues, 1 model selected 
    3428 > select #5:248-6192917 atoms, 2955 bonds, 372 residues, 1 model selected 
    3429 > fitmap sel inMap #1Fit molecule AlphaFold Q9JIF7 (#5) to map postprocess.mrc
    3430 > (#1) using 2917 atoms 
    3431 average map value = 0.008991, steps = 92 
    3432 shifted from previous position = 1.33 
    3433 rotated from previous position = 9.66 degrees 
    3434 atoms outside contour = 1911, contour level = 0.011253 
    3435  
    3436 Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1)
    3437 coordinates: 
    3438 Matrix rotation and translation 
    3439 0.04538395 -0.75064039 0.65915044 284.75500060 
    3440 -0.14313055 0.64813639 0.74795244 314.22146667 
    3441 -0.98866270 -0.12828960 -0.07802459 347.64202153 
    3442 Axis -0.44644928 0.83956824 0.30952901 
    3443 Axis point 359.26930118 0.00000000 -77.14856130 
    3444 Rotation angle (degrees) 101.08424479 
    3445 Shift along axis 244.28698872 
    3446  
    3447 > show #!1 models> hide #!1 models> select clear[Repeated 2 time(s)]> select
    3448 > #5/A:6257 atoms, 7 bonds, 1 residue, 1 model selected 
    3449 > select #5/A:66111 atoms, 10 bonds, 1 residue, 1 model selected 
    3450 > select #5:625-661304 atoms, 305 bonds, 37 residues, 1 model selected 
    3451 > fitmap sel inMap #1Fit molecule AlphaFold Q9JIF7 (#5) to map postprocess.mrc
    3452 > (#1) using 304 atoms 
    3453 average map value = 0.008099, steps = 96 
    3454 shifted from previous position = 3.7 
    3455 rotated from previous position = 18.7 degrees 
    3456 atoms outside contour = 241, contour level = 0.011253 
    3457  
    3458 Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1)
    3459 coordinates: 
    3460 Matrix rotation and translation 
    3461 -0.02186533 -0.51118779 0.85919087 281.99306344 
    3462 -0.21164457 0.84228549 0.49574360 318.48989776 
    3463 -0.97710208 -0.17100349 -0.12660697 349.71050382 
    3464 Axis -0.33735033 0.92909895 0.15155822 
    3465 Axis point 342.36646040 0.00000000 -20.66281678 
    3466 Rotation angle (degrees) 98.80623687 
    3467 Shift along axis 253.77967932 
    3468  
    3469 > select up220 atoms, 219 bonds, 27 residues, 1 model selected 
    3470 > select up7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    3471 > select up24525 atoms, 25024 bonds, 3091 residues, 7 models selected 
    3472 > select #5:248-6192917 atoms, 2955 bonds, 372 residues, 1 model selected 
    3473 > fitmap sel inMap #1Fit molecule AlphaFold Q9JIF7 (#5) to map postprocess.mrc
    3474 > (#1) using 2917 atoms 
    3475 average map value = 0.008992, steps = 92 
    3476 shifted from previous position = 3.51 
    3477 rotated from previous position = 18.7 degrees 
    3478 atoms outside contour = 1915, contour level = 0.011253 
    3479  
    3480 Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1)
    3481 coordinates: 
    3482 Matrix rotation and translation 
    3483 0.04673051 -0.75025969 0.65948969 284.75211128 
    3484 -0.14540060 0.64807045 0.74757164 314.20252886 
    3485 -0.98826865 -0.13082460 -0.07880354 347.60466200 
    3486 Axis -0.44752446 0.83949831 0.30816302 
    3487 Axis point 359.78743319 0.00000000 -76.92474568 
    3488 Rotation angle (degrees) 101.06960017 
    3489 Shift along axis 243.45786006 
    3490  
    3491 > show #!1 models> ui tool show "Fit in Map"> select #5:625-661304 atoms, 305
    3492 > bonds, 37 residues, 1 model selected 
    3493 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9JIF7
    3494 > (#5) to map postprocess.mrc (#1) using 304 atoms 
    3495 average map value = 0.008098, steps = 108 
    3496 shifted from previous position = 3.71 
    3497 rotated from previous position = 18.9 degrees 
    3498 atoms outside contour = 242, contour level = 0.011253 
    3499  
    3500 > select clear> select add #5/A:2556 atoms, 5 bonds, 1 residue, 1 model
    3501 > selected 
    3502 > hide #!1 models> select add #5/A:82714 atoms, 12 bonds, 2 residues, 1 model
    3503 > selected 
    3504 > select #5/A:2556 atoms, 5 bonds, 1 residue, 1 model selected 
    3505 > select clear[Repeated 1 time(s)]> select add #5/A:82912 atoms, 12 bonds, 1
    3506 > residue, 1 model selected 
    3507 > select clear[Repeated 1 time(s)]> select #5/A:2566 atoms, 5 bonds, 1
    3508 > residue, 1 model selected 
    3509 > select #5/A:199 atoms, 8 bonds, 1 residue, 1 model selected 
    3510 > select #5:19-2561934 atoms, 1972 bonds, 238 residues, 1 model selected 
    3511 > ui tool show "Fit in Map"> fitmap sel inMap #1 moveWholeMolecules falseFit
    3512 > molecule AlphaFold Q9JIF7 (#5) to map postprocess.mrc (#1) using 1934 atoms 
    3513 average map value = 0.009335, steps = 84 
    3514 shifted from previous position = 9.44 
    3515 rotated from previous position = 19.9 degrees 
    3516 atoms outside contour = 1289, contour level = 0.011253 
    3517  
    3518 > show #!1 models> hide #5 models> volume #1 level 0.007811> show #5 models>
    3519 > show #4 models> show #3 models> volume #1 level 0.009245> volume #1 level
    3520 > 0.005087> volume #1 level 0.009389> hide #3 models> hide #4 models> hide #5
    3521 > models> volume #1 level 0.007955> volume #1 level 0.006951> ui tool show
    3522 > AlphaFoldFetching compressed P84078 UniProt info from
    3523 > https://www.uniprot.org/uniprot/P84078.xml 
    3524 > alphafold match P84078Fetching AlphaFold database settings from
    3525 > https://www.rbvi.ucsf.edu/chimerax/data/status/alphafold_database3.json 
    3526 Fetching compressed AlphaFold P84078 from
    3527 https://alphafold.ebi.ac.uk/files/AF-P84078-F1-model_v4.cif 
    3528 1 AlphaFold model found using UniProt identifier: P84078 (UniProt P84078) 
    3529 | Sequence Similarity 
    3530 --- 
    3531 AlphaFold Model| Query Sequence| Identity %| Coverage % 
    3532 P84078 | P84078 | 100.0 | 100.0   
    3533 Opened 1 AlphaFold model 
    3534 > select add #63391 atoms, 3455 bonds, 419 residues, 2 models selected 
    3535 > ui mousemode right "translate selected models"[Repeated 1 time(s)]> view
    3536 > matrix models
    3537 > #5,0.046731,-0.75026,0.65949,358.15,-0.1454,0.64807,0.74757,273.41,-0.98827,-0.13082,-0.078804,676.69,#6,1,0,0,73.4,0,1,0,-40.79,0,0,1,329.09>
    3538 > view matrix models
    3539 > #5,0.046731,-0.75026,0.65949,488.25,-0.1454,0.64807,0.74757,635.09,-0.98827,-0.13082,-0.078804,585.3,#6,1,0,0,203.5,0,1,0,320.89,0,0,1,237.7>
    3540 > view matrix models
    3541 > #5,0.046731,-0.75026,0.65949,509.25,-0.1454,0.64807,0.74757,660.67,-0.98827,-0.13082,-0.078804,614.35,#6,1,0,0,224.5,0,1,0,346.47,0,0,1,266.74>
    3542 > view matrix models
    3543 > #5,0.046731,-0.75026,0.65949,505.66,-0.1454,0.64807,0.74757,658.86,-0.98827,-0.13082,-0.078804,611.53,#6,1,0,0,220.91,0,1,0,344.66,0,0,1,263.93>
    3544 > ui mousemode right "rotate selected models"> view matrix models
    3545 > #5,-0.45029,0.28448,0.84635,697.73,-0.88308,-0.28199,-0.37504,549.91,0.13197,-0.91627,0.3782,425.79,#6,0.32368,0.88255,0.34109,209.69,-0.077031,-0.33472,0.93916,350.56,0.94303,-0.33026,-0.040359,275.06>
    3546 > view matrix models
    3547 > #5,-0.64611,0.34327,0.6817,701.97,-0.72307,-0.56124,-0.40271,497.44,0.24436,-0.75311,0.61083,465.1,#6,0.16184,0.82603,0.5399,208.67,0.12171,-0.55964,0.81975,353.67,0.97928,-0.066957,-0.1911,273.71>
    3548 > volume #1 level 0.008815> volume #1 level 0.007668> ui mousemode right
    3549 > "rotate selected models"> view matrix models
    3550 > #5,-0.37127,-0.68688,0.62479,642.13,-0.38801,-0.49655,-0.77646,224.25,0.84357,-0.5307,-0.082162,-39.636,#6,0.91003,0.07591,0.40754,217.48,-0.15766,-0.84584,0.5096,357.76,0.38339,-0.52801,-0.75777,280.5>
    3551 > view matrix models
    3552 > #5,0.46673,-0.10013,0.87871,396.42,-0.88433,-0.065543,0.46224,863.68,0.01131,-0.99281,-0.11914,280.92,#6,0.67644,0.52415,-0.5174,218.96,0.3127,0.43167,0.8461,344.9,0.66683,-0.73412,0.1281,277.17>
    3553 > view matrix models
    3554 > #5,0.55973,-0.02731,0.82823,337.98,-0.72757,-0.49463,0.47539,837.56,0.39668,-0.86868,-0.29673,62.067,#6,0.59285,0.52008,-0.61485,219.48,0.65061,0.14062,0.74628,348.7,0.47458,-0.84246,-0.255,280.27>
    3555 > view matrix models
    3556 > #5,0.55281,-0.035838,0.83254,342.74,-0.74921,-0.45875,0.47773,844.23,0.36481,-0.88784,-0.28045,81.337,#6,0.60177,0.51878,-0.60724,219.46,0.62423,0.16877,0.76279,348.3,0.4982,-0.83809,-0.22227,280.06>
    3557 > view matrix models
    3558 > #5,0.017758,-0.75813,0.65186,513.84,-0.92289,-0.26324,-0.28102,600.1,0.38465,-0.59661,-0.70435,-109.32,#6,0.99952,-0.0065926,0.030264,220.78,-0.030955,-0.24649,0.96865,349.66,0.0010739,-0.96912,-0.24658,280.59>
    3559 > view matrix models
    3560 > #5,-0.97931,-0.10943,0.17021,653.05,-0.17636,0.049126,-0.9831,32.019,0.099216,-0.99278,-0.067408,268.73,#6,0.14859,0.19872,0.96873,211.56,-0.69344,-0.67746,0.24534,357.06,0.70502,-0.70821,0.03714,277.58>
    3561 > view matrix models
    3562 > #5,-0.86351,0.34359,0.36917,660.07,-0.32165,0.18859,-0.92789,98.453,-0.38844,-0.91999,-0.052331,449.68,#6,-0.054673,0.62421,0.77934,208.61,-0.76845,-0.52468,0.36633,354.79,0.63757,-0.57886,0.50836,273.31>
    3563 > view matrix models
    3564 > #5,-0.848,0.34752,0.40014,666.2,-0.34914,0.20172,-0.9151,112.75,-0.39874,-0.91572,-0.049725,454.23,#6,-0.036469,0.64766,0.76106,208.54,-0.77116,-0.50261,0.39077,354.43,0.6356,-0.57265,0.51778,273.19>
    3565 > ui mousemode right "translate selected models"> view matrix models
    3566 > #5,-0.848,0.34752,0.40014,675.82,-0.34914,0.20172,-0.9151,66.483,-0.39874,-0.91572,-0.049725,473.97,#6,-0.036469,0.64766,0.76106,218.16,-0.77116,-0.50261,0.39077,308.16,0.6356,-0.57265,0.51778,292.93>
    3567 > ui mousemode right "translate selected models"> view matrix models
    3568 > #5,-0.848,0.34752,0.40014,688.49,-0.34914,0.20172,-0.9151,71.033,-0.39874,-0.91572,-0.049725,471.57,#6,-0.036469,0.64766,0.76106,230.83,-0.77116,-0.50261,0.39077,312.71,0.6356,-0.57265,0.51778,290.53>
    3569 > view matrix models
    3570 > #5,-0.848,0.34752,0.40014,693.85,-0.34914,0.20172,-0.9151,69.786,-0.39874,-0.91572,-0.049725,472.74,#6,-0.036469,0.64766,0.76106,236.19,-0.77116,-0.50261,0.39077,311.46,0.6356,-0.57265,0.51778,291.69>
    3571 > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078
    3572 > (#6) to map postprocess.mrc (#1) using 3391 atoms 
    3573 average map value = 0.006422, steps = 2000 
    3574 shifted from previous position = 223 
    3575 rotated from previous position = 48.9 degrees 
    3576 atoms outside contour = 2952, contour level = 0.0076678 
    3577  
    3578 Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1)
    3579 coordinates: 
    3580 Matrix rotation and translation 
    3581 -0.78544199 -0.47592112 0.39570188 715.46000326 
    3582 -0.51313102 0.14321967 -0.84627696 160.72942314 
    3583 0.34608878 -0.86774836 -0.35670063 67.50377065 
    3584 Axis -0.32716750 0.75597252 -0.56698058 
    3585 Axis point 392.31439396 0.00000000 86.79523471 
    3586 Rotation angle (degrees) 178.11955374 
    3587 Shift along axis -150.84155657 
    3588  
    3589 Position of AlphaFold P84078 (#6) relative to postprocess.mrc (#1)
    3590 coordinates: 
    3591 Matrix rotation and translation 
    3592 0.58132163 0.10158882 0.80730717 237.38423842 
    3593 -0.68954175 -0.46522666 0.55506427 310.31035722 
    3594 0.43196914 -0.87934286 -0.20039659 290.45018442 
    3595 Axis -0.85352803 0.22334073 -0.47075346 
    3596 Axis point -0.00000000 238.34586381 -38.53694803 
    3597 Rotation angle (degrees) 122.83017374 
    3598 Shift along axis -270.03958986 
    3599  
    3600 > ui mousemode right "rotate selected models"> view matrix models
    3601 > #5,-0.82136,-0.26559,0.50481,758.27,-0.56919,0.43962,-0.69481,222.17,-0.037383,-0.85802,-0.51225,147.42,#6,0.4938,0.32468,0.80669,235.24,-0.81465,-0.15176,0.55975,307.26,0.30416,-0.93357,0.18956,288.25>
    3602 > view matrix models
    3603 > #5,-0.49775,-0.37352,0.78277,754.22,-0.85254,0.37659,-0.36242,460.08,-0.15941,-0.84774,-0.50589,194.2,#6,0.7732,0.41548,0.47909,236.96,-0.56139,0.097083,0.82183,303.76,0.29494,-0.90441,0.30831,287.21>
    3604 > ui mousemode right "translate selected models"> view matrix models
    3605 > #5,-0.49775,-0.37352,0.78277,752.99,-0.85254,0.37659,-0.36242,463.44,-0.15941,-0.84774,-0.50589,195.37,#6,0.7732,0.41548,0.47909,235.74,-0.56139,0.097083,0.82183,307.12,0.29494,-0.90441,0.30831,288.38>
    3606 > ui mousemode right "rotate selected models"> view matrix models
    3607 > #5,-0.38026,-0.5892,0.71291,695.78,-0.92487,0.23958,-0.29532,524.71,0.0031968,-0.77165,-0.63604,80.022,#6,0.89444,0.2064,0.39671,238.34,-0.41773,0.068975,0.90595,307.07,0.15963,-0.97603,0.14791,289.82>
    3608 > view matrix models
    3609 > #5,-0.5285,-0.28376,0.80011,765.54,-0.81897,0.41863,-0.39249,436.75,-0.22357,-0.86269,-0.45363,240.31,#6,0.71586,0.49108,0.49637,234.85,-0.61119,0.096966,0.78552,307.27,0.33763,-0.8657,0.36956,287.71>
    3610 > view matrix models
    3611 > #5,-0.51604,-0.53596,0.66817,725.04,-0.85145,0.23586,-0.4684,430.37,0.093449,-0.81062,-0.57806,71.813,#6,0.81865,0.22719,0.52745,237.2,-0.52565,-0.073503,0.84752,308.55,0.23132,-0.97107,0.059251,290.46>
    3612 > view matrix models
    3613 > #5,0.13499,-0.86453,0.48411,433.78,-0.94222,-0.26318,-0.20726,596.47,0.30659,-0.42816,-0.85011,-136.41,#6,0.9742,-0.218,-0.058457,245.19,0.01674,-0.1885,0.98193,309.61,-0.22508,-0.95757,-0.17999,291.12>
    3614 > view matrix models
    3615 > #5,-0.2051,-0.47242,0.85718,680.36,-0.97757,0.056064,-0.20301,591.45,0.047851,-0.87959,-0.47332,133.72,#6,0.91015,0.36446,0.19695,238.22,-0.22163,0.026705,0.97477,307.33,0.35001,-0.93083,0.10508,290>
    3616 > ui mousemode right "translate selected models"> view matrix models
    3617 > #5,-0.2051,-0.47242,0.85718,680.48,-0.97757,0.056064,-0.20301,589.73,0.047851,-0.87959,-0.47332,130.59,#6,0.91015,0.36446,0.19695,238.33,-0.22163,0.026705,0.97477,305.62,0.35001,-0.93083,0.10508,286.87>
    3618 > view matrix models
    3619 > #5,-0.2051,-0.47242,0.85718,679,-0.97757,0.056064,-0.20301,590.84,0.047851,-0.87959,-0.47332,131,#6,0.91015,0.36446,0.19695,236.86,-0.22163,0.026705,0.97477,306.72,0.35001,-0.93083,0.10508,287.28>
    3620 > view matrix models
    3621 > #5,-0.2051,-0.47242,0.85718,679.45,-0.97757,0.056064,-0.20301,594.98,0.047851,-0.87959,-0.47332,131.08,#6,0.91015,0.36446,0.19695,237.31,-0.22163,0.026705,0.97477,310.86,0.35001,-0.93083,0.10508,287.36>
    3622 > ui mousemode right "rotate selected models"> view matrix models
    3623 > #5,-0.95483,-0.2827,0.091546,645.11,0.025199,-0.384,-0.92299,-28.007,0.29608,-0.87899,0.37378,370.13,#6,0.22785,0.02406,0.9734,234.31,-0.31943,-0.94252,0.098068,325,0.91981,-0.33327,-0.20707,284.9>
    3624 > view matrix models
    3625 > #5,-0.84993,0.079467,-0.52086,345.21,0.34319,-0.66661,-0.6617,-25.719,-0.3998,-0.74116,0.5393,682.44,#6,-0.44284,-0.2143,0.87061,236.02,0.079783,-0.97658,-0.19981,327.86,0.89304,-0.019022,0.44957,277.85>
    3626 > view matrix models
    3627 > #5,-0.98119,0.14656,-0.12566,543.59,0.028815,-0.53242,-0.84599,9.8618,-0.19089,-0.8337,0.51818,602.99,#6,-0.23868,0.14371,0.96041,232.56,-0.15712,-0.98167,0.10784,325.56,0.9583,-0.12516,0.25688,280.14>
    3628 > ui mousemode right "translate selected models"> view matrix models
    3629 > #5,-0.98119,0.14656,-0.12566,550.85,0.028815,-0.53242,-0.84599,-0.71247,-0.19089,-0.8337,0.51818,614.04,#6,-0.23868,0.14371,0.96041,239.82,-0.15712,-0.98167,0.10784,314.99,0.9583,-0.12516,0.25688,291.19>
    3630 > ui mousemode right "rotate selected models"> view matrix models
    3631 > #5,-0.98945,0.13416,0.054668,625.01,-0.078216,-0.17707,-0.98108,-35.936,-0.12194,-0.97501,0.1857,467.66,#6,-0.11084,0.27168,0.95598,238.91,-0.51782,-0.83681,0.17778,312.65,0.84828,-0.47532,0.23344,294.31>
    3632 > view matrix models
    3633 > #5,-0.97538,0.074364,0.20762,683.2,-0.21728,-0.16286,-0.96243,21.676,-0.037756,-0.98384,0.17501,433.03,#6,0.035553,0.34523,0.93785,238.6,-0.52267,-0.79344,0.31188,311.4,0.85179,-0.50128,0.15223,295.07>
    3634 > view matrix models
    3635 > #5,-0.94584,-0.32042,-0.052228,595.3,-0.02913,0.24399,-0.96934,-75.412,0.32334,-0.91531,-0.24011,133.88,#6,0.16175,-0.10917,0.98077,242.62,-0.82369,-0.56229,0.073256,310.34,0.54349,-0.8197,-0.18088,299.55>
    3636 > view matrix models
    3637 > #5,-0.95651,-0.28552,-0.059666,594.18,-0.02128,0.27232,-0.96197,-77.176,0.29091,-0.91887,-0.26655,135.73,#6,0.13016,-0.090561,0.98735,242.36,-0.83971,-0.53957,0.061211,310.19,0.5272,-0.83706,-0.14628,299.46>
    3638 > ui mousemode right "translate selected models"> view matrix models
    3639 > #5,-0.95651,-0.28552,-0.059666,584.96,-0.02128,0.27232,-0.96197,-73.984,0.29091,-0.91887,-0.26655,126.76,#6,0.13016,-0.090561,0.98735,233.14,-0.83971,-0.53957,0.061211,313.38,0.5272,-0.83706,-0.14628,290.49>
    3640 > view matrix models
    3641 > #5,-0.95651,-0.28552,-0.059666,586.7,-0.02128,0.27232,-0.96197,-73.161,0.29091,-0.91887,-0.26655,127.44,#6,0.13016,-0.090561,0.98735,234.88,-0.83971,-0.53957,0.061211,314.21,0.5272,-0.83706,-0.14628,291.18>
    3642 > view matrix models
    3643 > #5,-0.95651,-0.28552,-0.059666,586.01,-0.02128,0.27232,-0.96197,-72.51,0.29091,-0.91887,-0.26655,126.77,#6,0.13016,-0.090561,0.98735,234.19,-0.83971,-0.53957,0.061211,314.86,0.5272,-0.83706,-0.14628,290.5>
    3644 > view matrix models
    3645 > #5,-0.95651,-0.28552,-0.059666,586.93,-0.02128,0.27232,-0.96197,-70.705,0.29091,-0.91887,-0.26655,125.92,#6,0.13016,-0.090561,0.98735,235.11,-0.83971,-0.53957,0.061211,316.66,0.5272,-0.83706,-0.14628,289.65>
    3646 > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078
    3647 > (#6) to map postprocess.mrc (#1) using 3391 atoms 
    3648 average map value = 0.006833, steps = 2000 
    3649 shifted from previous position = 35.4 
    3650 rotated from previous position = 6.86 degrees 
    3651 atoms outside contour = 2846, contour level = 0.0076678 
    3652  
    3653 Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1)
    3654 coordinates: 
    3655 Matrix rotation and translation 
    3656 -0.96231226 -0.25463330 -0.09548300 575.09609390 
    3657 0.04958688 0.18092578 -0.98224590 -102.68057512 
    3658 0.26738785 -0.94996197 -0.16148063 179.64811468 
    3659 Axis 0.06802008 -0.76454471 0.64097164 
    3660 Axis point 280.58340423 0.00000000 90.80899720 
    3661 Rotation angle (degrees) 166.27206933 
    3662 Shift along axis 232.77132307 
    3663  
    3664 Position of AlphaFold P84078 (#6) relative to postprocess.mrc (#1)
    3665 coordinates: 
    3666 Matrix rotation and translation 
    3667 0.08310170 -0.09647993 0.99185973 236.97187835 
    3668 -0.78120515 -0.62425648 0.00472976 314.26811764 
    3669 0.61871854 -0.77523898 -0.12724739 291.28053862 
    3670 Axis -0.70718474 0.33832095 -0.62082902 
    3671 Axis point 0.00000000 243.78687797 -42.59228603 
    3672 Rotation angle (degrees) 146.53274098 
    3673 Shift along axis -242.09482207 
    3674  
    3675 > ui mousemode right "rotate selected models"> view matrix models
    3676 > #5,0.59055,-0.24829,-0.76786,-259.42,0.70109,-0.31337,0.64052,321.03,-0.39966,-0.9166,-0.010989,481.93,#6,-0.29252,-0.8208,-0.49063,252.32,0.69029,0.17381,-0.70235,314,0.66176,-0.54412,0.51575,285.18>
    3677 > view matrix models
    3678 > #5,0.7237,0.28678,-0.62771,-286.79,0.30928,-0.94789,-0.07649,224.72,-0.61694,-0.13878,-0.77468,215.99,#6,-0.59531,-0.38863,-0.70326,249.29,0.67517,-0.71645,-0.17562,318.62,-0.4356,-0.57937,0.6889,282.6>
    3679 > view matrix models
    3680 > #5,0.48684,0.83037,0.27104,117.52,0.74137,-0.22872,-0.63092,-195.07,-0.4619,0.5081,-0.72697,137.6,#6,-0.4215,0.66998,-0.61112,239.46,-0.20984,-0.72768,-0.65303,320.32,-0.88222,-0.14701,0.4473,279.52>
    3681 > view matrix models
    3682 > #5,-0.1243,0.97397,-0.18956,154,0.87072,0.19868,0.44985,152.58,0.4758,-0.10914,-0.87275,-226.48,#6,-0.86155,0.50756,0.010362,236.25,0.1883,0.33845,-0.92195,313.09,-0.47145,-0.79236,-0.38717,291.31>
    3683 > view matrix models
    3684 > #5,-0.11846,0.94765,0.29653,343.11,0.9592,0.18642,-0.21256,-137.68,-0.25671,0.25925,-0.93107,-2.2351,#6,-0.52096,0.85304,-0.030271,233.95,-0.23522,-0.17756,-0.95559,317.26,-0.82053,-0.49071,0.29315,283.69>
    3685 > view matrix models
    3686 > #5,0.38244,0.69187,-0.61242,-180.16,-0.34259,0.72174,0.60144,626.22,0.85812,-0.020207,0.51305,167.91,#6,-0.90509,-0.065052,-0.42021,244.07,-0.16086,0.96717,0.19675,299.74,0.39361,0.24568,-0.88584,286.56>
    3687 > view matrix models
    3688 > #5,-0.010124,0.85975,0.51061,392.17,0.13388,-0.50488,0.85275,624.51,0.99095,0.076994,-0.10999,-130.07,#6,-0.30877,0.94037,-0.14271,234.23,0.94742,0.29083,-0.13346,309.74,-0.083995,-0.17641,-0.98073,290.18>
    3689 > view matrix models
    3690 > #5,-0.47691,0.62752,0.61544,619.28,0.80676,0.034608,0.58987,240.89,0.34886,0.77783,-0.52276,-97.925,#6,-0.087213,0.93611,0.34072,231.55,0.40075,0.3461,-0.8483,312.9,-0.91203,0.06256,-0.40533,283.01>
    3691 > view matrix models
    3692 > #5,-0.26096,0.59122,0.76313,599.62,0.96303,0.10471,0.2482,45.716,0.066835,0.79969,-0.59668,-24.265,#6,0.047515,0.99159,0.12042,232.68,0.13013,0.11338,-0.98499,315.42,-0.99036,0.062472,-0.12365,281.09>
    3693 > view matrix models
    3694 > #5,-0.95651,0.065195,0.28433,701.4,0.28764,0.048556,0.95651,574.22,0.048553,0.99669,-0.065196,177.67,#6,0.093902,0.39389,0.91435,233.07,0.60782,0.7047,-0.36599,306.94,-0.7885,0.59013,-0.17324,276.99>
    3695 > view matrix models
    3696 > #5,-0.4407,0.038915,0.89681,752.05,0.84001,-0.33436,0.4273,187.99,0.31649,0.94164,0.11467,152.57,#6,0.54165,0.75973,0.35977,234.04,0.57191,-0.019389,-0.82008,316.29,-0.61606,0.64995,-0.445,278.47>
    3697 > view matrix models
    3698 > #5,0.015963,0.0070203,0.99985,626.06,0.36125,-0.93247,0.00077988,234.78,0.93233,0.36118,-0.017421,-89.91,#6,0.65487,0.74969,-0.095485,237.22,0.71699,-0.65625,-0.23508,318.53,-0.2389,0.085485,-0.96727,287.49>
    3699 > view matrix models
    3700 > #5,-0.060137,0.76102,0.64593,469.47,-0.21824,-0.64147,0.73545,716.84,0.97404,-0.096742,0.20466,9.6358,#6,-0.14779,0.98482,-0.09103,233.76,0.95609,0.16581,0.24165,308.49,0.25307,-0.051321,-0.96609,289.51>
    3701 > view matrix models
    3702 > #5,0.42809,0.027838,0.90331,435.35,0.79791,-0.48097,-0.36332,-95.922,0.42435,0.8763,-0.22811,-16.842,#6,0.59484,0.63108,-0.4979,240.75,0.15853,-0.69933,-0.697,320.95,-0.78806,0.33567,-0.51603,281.47>
    3703 > view matrix models
    3704 > #5,0.2184,0.60798,0.76332,422.15,0.74111,-0.61222,0.27558,182.36,0.63487,0.50552,-0.58429,-210.44,#6,0.057465,0.9329,-0.35553,236.25,0.6757,-0.2985,-0.67404,318.04,-0.73494,-0.2015,-0.64751,287.22>
    3705 > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078
    3706 > (#6) to map postprocess.mrc (#1) using 3391 atoms 
    3707 average map value = 0.006369, steps = 2000 
    3708 shifted from previous position = 47.6 
    3709 rotated from previous position = 11.7 degrees 
    3710 atoms outside contour = 2902, contour level = 0.0076678 
    3711  
    3712 Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1)
    3713 coordinates: 
    3714 Matrix rotation and translation 
    3715 0.30252382 0.72278836 0.62133431 332.10274732 
    3716 0.73609320 -0.59129658 0.32944673 198.61776044 
    3717 0.60551312 0.35769448 -0.71092090 -235.47233701 
    3718 Axis 0.80699148 0.45198534 0.38009736 
    3719 Axis point 0.00000000 8.13542212 -195.52778063 
    3720 Rotation angle (degrees) 178.99716459 
    3721 Shift along axis 268.27399044 
    3722  
    3723 Position of AlphaFold P84078 (#6) relative to postprocess.mrc (#1)
    3724 coordinates: 
    3725 Matrix rotation and translation 
    3726 -0.11837831 0.88892254 -0.44249665 240.32340880 
    3727 0.69529073 -0.24394520 -0.67606327 312.28320062 
    3728 -0.70891281 -0.38769505 -0.58918178 293.00918140 
    3729 Axis 0.65874746 0.60860025 -0.44233191 
    3730 Axis point 0.00000000 12.35318661 242.25345413 
    3731 Rotation angle (degrees) 167.35696729 
    3732 Shift along axis 218.76075747 
    3733  
    3734 > view matrix models
    3735 > #5,-0.2533,0.92841,0.27182,387.72,0.081794,-0.25943,0.96229,665.97,0.96392,0.26598,-0.010227,-88.419,#6,-0.52912,0.84171,0.10744,236.57,0.83308,0.53936,-0.12273,301.94,-0.16125,0.024573,-0.98661,292.73>
    3736 > view matrix models
    3737 > #5,-0.080396,0.95861,-0.27315,109.58,-0.50547,0.19698,0.84006,806.36,0.85909,0.20561,0.46871,140.76,#6,-0.9031,0.42874,-0.024432,240.52,0.38261,0.82915,0.40758,295.22,0.195,0.35873,-0.91284,289.83>
    3738 > ui mousemode right "rotate selected models"> ui mousemode right "translate
    3739 > selected models"> view matrix models
    3740 > #5,-0.080396,0.95861,-0.27315,113.92,-0.50547,0.19698,0.84006,812.52,0.85909,0.20561,0.46871,133.27,#6,-0.9031,0.42874,-0.024432,244.86,0.38261,0.82915,0.40758,301.37,0.195,0.35873,-0.91284,282.33>
    3741 > view matrix models
    3742 > #5,-0.080396,0.95861,-0.27315,109.21,-0.50547,0.19698,0.84006,820.14,0.85909,0.20561,0.46871,139.18,#6,-0.9031,0.42874,-0.024432,240.16,0.38261,0.82915,0.40758,309,0.195,0.35873,-0.91284,288.24>
    3743 > view matrix models
    3744 > #5,-0.080396,0.95861,-0.27315,108.57,-0.50547,0.19698,0.84006,824.36,0.85909,0.20561,0.46871,140.38,#6,-0.9031,0.42874,-0.024432,239.51,0.38261,0.82915,0.40758,313.22,0.195,0.35873,-0.91284,289.45>
    3745 > ui mousemode right "rotate selected models"> view matrix models
    3746 > #5,0.091143,0.9467,0.30895,273.24,-0.16968,-0.29094,0.94157,770.43,0.98128,-0.13824,0.13412,-13.934,#6,-0.50226,0.83124,-0.23827,237.91,0.83131,0.54002,0.13155,318.31,0.23802,-0.132,-0.96225,294.25>
    3747 > view matrix models
    3748 > #5,0.63807,0.72115,0.26983,70.505,-0.17926,-0.20168,0.96291,776.77,0.74882,-0.66278,0.00058407,51.936,#6,-0.33328,0.5763,-0.7462,243.71,0.77796,0.6152,0.12766,317.57,0.53263,-0.53797,-0.65337,296.41>
    3749 > view matrix models
    3750 > #5,0.53579,0.82092,0.19753,73.802,-0.12537,-0.154,0.98008,760.69,0.83499,-0.54989,0.020404,20.971,#6,-0.4606,0.60178,-0.65247,242.68,0.75604,0.65111,0.066811,317.6,0.46503,-0.46252,-0.75486,296.27>
    3751 > view matrix models
    3752 > #5,0.19065,0.96194,0.19575,191.5,-0.028672,-0.19387,0.98061,727.75,0.98124,-0.19256,-0.0093789,-66.552,#6,-0.5837,0.74202,-0.32968,239.16,0.79081,0.61161,-0.023577,318.59,0.18414,-0.27448,-0.9438,295.32>
    3753 > view matrix models
    3754 > #5,-0.062999,0.98925,-0.13198,155.35,-0.13769,0.12236,0.98289,749.26,0.98847,0.080093,0.1285,-32.246,#6,-0.83218,0.5516,-0.056758,238.73,0.54997,0.8341,0.042615,315.77,0.070848,0.0042482,-0.99748,292.97>
    3755 > view matrix models
    3756 > #5,-0.19218,0.97766,0.085187,288.36,0.077415,-0.071431,0.99444,686.52,0.9783,0.19771,-0.061957,-110.07,#6,-0.6863,0.72522,0.055312,236.69,0.71303,0.68586,-0.14553,318.57,-0.14347,-0.060435,-0.98781,293.14>
    3757 > view matrix models
    3758 > #5,0.41028,0.85223,0.32461,167.67,0.16147,-0.41821,0.89388,637.74,0.89755,-0.31433,-0.30919,-145.19,#6,-0.40615,0.73532,-0.54254,240.87,0.91082,0.37374,-0.17531,321.89,0.07386,-0.56535,-0.82153,296.98>
    3759 > view matrix models
    3760 > #5,0.34369,0.68075,0.64689,328.5,0.33116,-0.73245,0.59485,477.98,0.87876,0.0097805,-0.47717,-223.81,#6,-0.068061,0.87479,-0.47969,239.76,0.9573,-0.078141,-0.27833,326.69,-0.28096,-0.47815,-0.83212,295.68>
    3761 > view matrix models
    3762 > #5,0.16198,0.73523,0.65818,396.46,0.33802,-0.66797,0.66299,498.06,0.9271,0.11509,-0.35672,-201.11,#6,-0.10998,0.94497,-0.30813,237.97,0.95418,0.013589,-0.29891,325.99,-0.27828,-0.32689,-0.90316,294.78>
    3763 > ui mousemode right "translate selected models"> view matrix models
    3764 > #5,0.16198,0.73523,0.65818,392.54,0.33802,-0.66797,0.66299,486.45,0.9271,0.11509,-0.35672,-202.35,#6,-0.10998,0.94497,-0.30813,234.06,0.95418,0.013589,-0.29891,314.38,-0.27828,-0.32689,-0.90316,293.55>
    3765 > view matrix models
    3766 > #5,0.16198,0.73523,0.65818,392.9,0.33802,-0.66797,0.66299,484.42,0.9271,0.11509,-0.35672,-202.32,#6,-0.10998,0.94497,-0.30813,234.41,0.95418,0.013589,-0.29891,312.35,-0.27828,-0.32689,-0.90316,293.58>
    3767 > view matrix models
    3768 > #5,0.16198,0.73523,0.65818,397.84,0.33802,-0.66797,0.66299,485.66,0.9271,0.11509,-0.35672,-198.61,#6,-0.10998,0.94497,-0.30813,239.35,0.95418,0.013589,-0.29891,313.59,-0.27828,-0.32689,-0.90316,297.28>
    3769 > view matrix models
    3770 > #5,0.16198,0.73523,0.65818,399.84,0.33802,-0.66797,0.66299,484.43,0.9271,0.11509,-0.35672,-202.16,#6,-0.10998,0.94497,-0.30813,241.35,0.95418,0.013589,-0.29891,312.36,-0.27828,-0.32689,-0.90316,293.73>
    3771 > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078
    3772 > (#6) to map postprocess.mrc (#1) using 3391 atoms 
    3773 average map value = 0.006527, steps = 2000 
    3774 shifted from previous position = 57.2 
    3775 rotated from previous position = 12.8 degrees 
    3776 atoms outside contour = 2926, contour level = 0.0076678 
    3777  
    3778 Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1)
    3779 coordinates: 
    3780 Matrix rotation and translation 
    3781 -0.04834974 0.70373818 0.70881229 499.38635257 
    3782 0.37624850 -0.64453776 0.66558855 468.54924077 
    3783 0.92525637 0.29887060 -0.23361721 -164.79401783 
    3784 Axis -0.68265201 -0.40291451 -0.60962787 
    3785 Axis point 0.00000000 44.16621885 -335.00198418 
    3786 Rotation angle (degrees) 164.41914190 
    3787 Shift along axis -429.22935818 
    3788  
    3789 Position of AlphaFold P84078 (#6) relative to postprocess.mrc (#1)
    3790 coordinates: 
    3791 Matrix rotation and translation 
    3792 -0.06279140 0.99298997 -0.10014066 240.07573806 
    3793 0.94010178 0.02516248 -0.33996394 311.12020767 
    3794 -0.33506099 -0.11548923 -0.93509163 291.94452474 
    3795 Axis 0.68187636 0.71360654 -0.16065598 
    3796 Axis point -8.49428540 0.00000000 180.46874782 
    3797 Rotation angle (degrees) 170.52595832 
    3798 Shift along axis 338.81675107 
    3799  
    3800 > view matrix models
    3801 > #5,-0.04835,0.70374,0.70881,497.88,0.37625,-0.64454,0.66559,469.9,0.92526,0.29887,-0.23362,-167.1,#6,-0.062791,0.99299,-0.10014,238.57,0.9401,0.025162,-0.33996,312.47,-0.33506,-0.11549,-0.93509,289.64>
    3802 > ui mousemode right "rotate selected models"> view matrix models
    3803 > #5,-0.25589,0.96045,0.10979,324.76,-0.29595,-0.18595,0.93693,794.98,0.92029,0.20726,0.33183,60.99,#6,-0.66014,0.74172,0.11858,238.46,0.74358,0.62294,0.24297,303.06,0.10635,0.24857,-0.96276,287.27>
    3804 > view matrix models
    3805 > #5,-0.26553,0.96312,-0.043574,268.31,-0.40314,-0.069863,0.91247,817.74,0.87577,0.25985,0.40682,103.4,#6,-0.76373,0.6302,0.13985,239.16,0.63534,0.69548,0.33565,301.64,0.11427,0.3452,-0.93155,286.21>
    3806 > ui mousemode right "translate selected models"> view matrix models
    3807 > #5,-0.26553,0.96312,-0.043574,265.25,-0.40314,-0.069863,0.91247,819.82,0.87577,0.25985,0.40682,101.72,#6,-0.76373,0.6302,0.13985,236.1,0.63534,0.69548,0.33565,303.71,0.11427,0.3452,-0.93155,284.53>
    3808 > view matrix models
    3809 > #5,-0.26553,0.96312,-0.043574,264.6,-0.40314,-0.069863,0.91247,824.29,0.87577,0.25985,0.40682,102.95,#6,-0.76373,0.6302,0.13985,235.45,0.63534,0.69548,0.33565,308.18,0.11427,0.3452,-0.93155,285.76>
    3810 > view matrix models
    3811 > #5,-0.26553,0.96312,-0.043574,265.77,-0.40314,-0.069863,0.91247,822.97,0.87577,0.25985,0.40682,103.9,#6,-0.76373,0.6302,0.13985,236.62,0.63534,0.69548,0.33565,306.86,0.11427,0.3452,-0.93155,286.71>
    3812 > ui mousemode right "rotate selected models"> view matrix models
    3813 > #5,-0.096354,0.96226,-0.25451,121.23,-0.71537,0.11084,0.6899,839.95,0.69207,0.24855,0.67769,277.91,#6,-0.89429,0.44735,-0.010607,239.01,0.33839,0.6916,0.63811,304.48,0.2928,0.56707,-0.76987,283.98>
    3814 > view matrix models
    3815 > #5,-0.41274,-0.045038,-0.90974,44.264,-0.90109,-0.12566,0.41503,815.7,-0.13301,0.99105,0.011283,275.92,#6,-0.58546,-0.64927,0.48548,246.22,0.32588,0.35985,0.87425,305.94,-0.74232,0.67004,0.0009085,276.45>
    3816 > view matrix models
    3817 > #5,-0.59233,-0.74854,-0.29805,392.45,-0.67701,0.66298,-0.31957,397.92,0.43681,0.012488,-0.89947,-228.84,#6,0.33736,-0.62179,0.7068,246.07,-0.7398,0.28919,0.60751,306.54,-0.58215,-0.72783,-0.36244,291.6>
    3818 > view matrix models
    3819 > #5,-0.88795,-0.45286,-0.080415,567.97,0.28284,-0.39976,-0.87189,-105.43,0.3627,-0.79694,0.48306,387.78,#6,0.24524,-0.22449,0.94311,240.84,-0.26186,-0.952,-0.15852,323.36,0.93343,-0.20809,-0.29225,288.95>
    3820 > view matrix models
    3821 > #5,-0.88787,-0.45545,-0.065149,574.06,0.085665,-0.024526,-0.99602,-104.41,0.45204,-0.88992,0.060792,195.88,#6,0.25725,-0.21477,0.94218,240.78,-0.63446,-0.77295,-0.0029616,320.15,0.72889,-0.59701,-0.33511,292.39>
    3822 > view matrix models
    3823 > #5,-0.84528,-0.53404,-0.017379,581.86,-0.0041565,0.039095,-0.99923,-76.507,0.53431,-0.84455,-0.035266,125.31,#6,0.34971,-0.23618,0.9066,241.35,-0.68851,-0.72105,0.077736,319.08,0.63535,-0.65138,-0.41477,293.24>
    3824 > ui mousemode right "translate selected models"> view matrix models
    3825 > #5,-0.84528,-0.53404,-0.017379,577.09,-0.0041565,0.039095,-0.99923,-81.656,0.53431,-0.84455,-0.035266,122.35,#6,0.34971,-0.23618,0.9066,236.58,-0.68851,-0.72105,0.077736,313.93,0.63535,-0.65138,-0.41477,290.28>
    3826 > view matrix models
    3827 > #5,-0.84528,-0.53404,-0.017379,575.68,-0.0041565,0.039095,-0.99923,-81.253,0.53431,-0.84455,-0.035266,119.47,#6,0.34971,-0.23618,0.9066,235.17,-0.68851,-0.72105,0.077736,314.34,0.63535,-0.65138,-0.41477,287.4>
    3828 > view matrix models
    3829 > #5,-0.84528,-0.53404,-0.017379,575.42,-0.0041565,0.039095,-0.99923,-80.212,0.53431,-0.84455,-0.035266,121.31,#6,0.34971,-0.23618,0.9066,234.91,-0.68851,-0.72105,0.077736,315.38,0.63535,-0.65138,-0.41477,289.24>
    3830 > ui mousemode right "rotate selected models"> view matrix models
    3831 > #5,-0.898,-0.43956,0.019715,603.47,-0.0080542,-0.028378,-0.99956,-74.745,0.43993,-0.89776,0.021943,181.67,#6,0.30082,-0.13956,0.94341,233.73,-0.63829,-0.76447,0.090441,315.77,0.70859,-0.62938,-0.31905,288.55>
    3832 > view matrix models
    3833 > #5,-0.73058,-0.67803,0.080783,580.37,-0.29541,0.20719,-0.93263,42.645,0.61561,-0.70523,-0.35167,-40.668,#6,0.52783,-0.27279,0.80435,236.18,-0.78432,-0.51998,0.33834,311.75,0.32595,-0.80945,-0.48842,290.62>
    3834 > view matrix models
    3835 > #5,-0.82117,-0.54947,0.15417,634.42,-0.23969,0.0869,-0.96695,16.16,0.51791,-0.83098,-0.20306,61.046,#6,0.47555,-0.12144,0.87127,234.31,-0.71409,-0.6317,0.30171,313.1,0.51374,-0.76564,-0.38712,289.89>
    3836 > view matrix models
    3837 > #5,-0.86724,-0.44653,0.22026,670.82,-0.32028,0.16161,-0.93344,54.301,0.38121,-0.88006,-0.28317,83.161,#6,0.43974,0.0013758,0.89812,232.98,-0.75181,-0.54651,0.36894,311.85,0.49134,-0.83745,-0.23929,289.56>
    3838 > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078
    3839 > (#6) to map postprocess.mrc (#1) using 3391 atoms 
    3840 average map value = 0.006896, steps = 2000 
    3841 shifted from previous position = 102 
    3842 rotated from previous position = 20.5 degrees 
    3843 atoms outside contour = 2836, contour level = 0.0076678 
    3844  
    3845 Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1)
    3846 coordinates: 
    3847 Matrix rotation and translation 
    3848 -0.97686247 -0.21016135 0.03964732 631.50637819 
    3849 -0.05878614 0.08561538 -0.99459247 -62.25688663 
    3850 0.20563048 -0.97391077 -0.09598903 229.87395164 
    3851 Axis 0.09167666 -0.73576092 0.67100764 
    3852 Axis point 309.69104936 0.00000000 109.91985102 
    3853 Rotation angle (degrees) 173.52342786 
    3854 Shift along axis 257.94776112 
    3855  
    3856 Position of AlphaFold P84078 (#6) relative to postprocess.mrc (#1)
    3857 coordinates: 
    3858 Matrix rotation and translation 
    3859 0.13817331 0.03547624 0.98977248 236.96498569 
    3860 -0.72290436 -0.67949678 0.12527331 313.54567562 
    3861 0.67699144 -0.73282027 -0.06824239 291.07456381 
    3862 Axis -0.72282519 0.26347478 -0.63883079 
    3863 Axis point 0.00000000 226.26842741 -46.97006814 
    3864 Rotation angle (degrees) 143.58929744 
    3865 Shift along axis -274.62027921 
    3866  
    3867 > ui tool show AlphaFold> alphafold match P840781 AlphaFold model found using
    3868 > UniProt identifier: P84078 (UniProt P84078) 
    3869 | Sequence Similarity 
    3870 --- 
    3871 AlphaFold Model| Query Sequence| Identity %| Coverage % 
    3872 P84078 | P84078 | 100.0 | 100.0   
    3873 Opened 1 AlphaFold model 
    3874 > select subtract #61934 atoms, 1972 bonds, 238 residues, 1 model selected 
    3875 > select add #73391 atoms, 3455 bonds, 419 residues, 2 models selected 
    3876 > ui mousemode right "translate selected models"> view matrix models
    3877 > #5,-0.97686,-0.21016,0.039647,976.12,-0.058786,0.085615,-0.99459,70.39,0.20563,-0.97391,-0.095989,418.44,#7,1,0,0,344.62,0,1,0,132.65,0,0,1,188.56>
    3878 > view matrix models
    3879 > #5,-0.97686,-0.21016,0.039647,914.72,-0.058786,0.085615,-0.99459,296.23,0.20563,-0.97391,-0.095989,481.88,#7,1,0,0,283.21,0,1,0,358.48,0,0,1,252.01>
    3880 > view matrix models
    3881 > #5,-0.97686,-0.21016,0.039647,898.61,-0.058786,0.085615,-0.99459,313.49,0.20563,-0.97391,-0.095989,495.6,#7,1,0,0,267.11,0,1,0,375.75,0,0,1,265.73>
    3882 > view matrix models
    3883 > #5,-0.97686,-0.21016,0.039647,874.97,-0.058786,0.085615,-0.99459,288.55,0.20563,-0.97391,-0.095989,517.06,#7,1,0,0,243.47,0,1,0,350.81,0,0,1,287.18>
    3884 > ui mousemode right "rotate selected models"> view matrix models
    3885 > #5,-0.85125,-0.13258,-0.50773,735.11,0.24578,-0.9556,-0.16254,548.99,-0.46364,-0.26316,0.84604,714,#7,0.83929,0.54368,0.0028187,238.3,-0.045712,0.065399,0.99681,352.79,0.54176,-0.83674,0.079742,301.46>
    3886 > view matrix models
    3887 > #5,-0.57508,-0.29644,-0.7625,617.64,-0.20794,-0.84847,0.48669,817.01,-0.79123,0.43844,0.42629,618.56,#7,0.59384,0.7668,0.24365,234.35,0.40074,-0.54448,0.73686,360.66,0.69768,-0.33994,-0.63062,301.77>
    3888 > volume #1 level 0.006976> volume #1 level 0.01071> view matrix models
    3889 > #5,-0.092924,-0.41978,-0.90286,377.16,-0.46451,-0.78378,0.41222,934.2,-0.88068,0.45769,-0.12216,621.65,#7,0.1432,0.8675,0.47638,231.23,0.63483,-0.44979,0.62824,360.88,0.75927,0.21246,-0.61512,296.8>
    3890 > ui mousemode right "translate selected models"> view matrix models
    3891 > #5,-0.092924,-0.41978,-0.90286,349.18,-0.46451,-0.78378,0.41222,934.92,-0.88068,0.45769,-0.12216,595.75,#7,0.1432,0.8675,0.47638,203.25,0.63483,-0.44979,0.62824,361.61,0.75927,0.21246,-0.61512,270.9>
    3892 > volume #1 level 0.0067> view matrix models
    3893 > #5,-0.092924,-0.41978,-0.90286,374.03,-0.46451,-0.78378,0.41222,927.65,-0.88068,0.45769,-0.12216,624.03,#7,0.1432,0.8675,0.47638,228.1,0.63483,-0.44979,0.62824,354.34,0.75927,0.21246,-0.61512,299.18>
    3894 > ui mousemode right "rotate selected models"> view matrix models
    3895 > #5,-0.78353,-0.53891,-0.30928,853.27,-0.52511,0.3082,0.79327,600.83,-0.33218,0.78395,-0.52447,165.9,#7,0.8664,0.30753,0.39342,234.85,0.47963,-0.73172,-0.48428,363.71,0.13894,0.60828,-0.78147,295.66>
    3896 > view matrix models
    3897 > #5,-0.49504,-0.20081,-0.84535,528.72,-0.8214,-0.20904,0.53067,934.23,-0.28328,0.95707,-0.061463,110.84,#7,0.49227,0.85268,0.17492,230.72,0.86736,-0.49741,-0.016255,359.25,0.073149,0.15972,-0.98445,300.88>
    3898 > view matrix models
    3899 > #5,-0.31735,0.55711,-0.76741,163.09,-0.71256,-0.67406,-0.19467,984.26,-0.62573,0.48505,0.61089,524,#7,0.1625,0.82961,-0.53417,234.91,0.83002,0.1778,0.52864,349.65,0.53354,-0.52928,-0.6597,305.77>
    3900 > view matrix models
    3901 > #5,-0.42011,0.76147,-0.49364,168.97,-0.86041,-0.50714,-0.05003,1019.5,-0.28844,0.40371,0.86823,380.5,#7,0.23079,0.58086,-0.7806,238.83,0.9451,0.056921,0.32178,352.24,0.23134,-0.81201,-0.53583,307.03>
    3902 > view matrix models
    3903 > #5,-0.59175,0.80293,0.071683,293.85,-0.77375,-0.5408,-0.32991,961.41,-0.22613,-0.25069,0.94129,584.05,#7,0.41216,0.032235,-0.91054,244.89,0.85643,0.32731,0.39925,349.17,0.3109,-0.94437,0.1073,304.25>
    3904 > view matrix models
    3905 > #5,-0.60495,0.24786,-0.7567,437.69,-0.53688,-0.82878,0.15775,965.88,-0.58804,0.50169,0.63444,498.4,#7,0.50886,0.80939,-0.29315,234.12,0.70489,-0.19629,0.68162,351.83,0.49415,-0.55349,-0.67042,305.99>
    3906 > view matrix models
    3907 > #5,-0.32974,0.62176,-0.71042,151.31,-0.43463,-0.76799,-0.47041,839.27,-0.83807,0.15366,0.52347,756.42,#7,0.16328,0.77919,-0.60515,235.81,0.56733,0.42767,0.70373,345.85,0.80714,-0.45822,-0.37223,303.74>
    3908 > view matrix models
    3909 > #5,-0.00082256,-0.62086,-0.78392,402.3,-0.99976,0.017546,-0.012847,914.25,0.02173,0.78373,-0.62073,-42.334,#7,0.1002,0.72658,0.67974,228,0.97243,0.073052,-0.22144,355.6,-0.21055,0.68319,-0.69923,293.9>
    3910 > view matrix models
    3911 > #5,-0.30162,0.011223,-0.95336,335.08,-0.95287,-0.037697,0.30102,930.7,-0.03256,0.99923,0.022064,-40.478,#7,0.25448,0.9669,0.01856,230.3,0.95068,-0.2466,-0.18812,358.23,-0.17732,0.065518,-0.98197,301.31>
    3912 > view matrix models
    3913 > #5,-0.22656,0.75112,-0.62007,53.238,-0.70375,-0.56636,-0.42892,923.37,-0.67335,0.3392,0.65692,606.54,#7,0.038882,0.69435,-0.71859,237.1,0.78949,0.41948,0.44805,347.92,0.61253,-0.58474,-0.53187,305.58>
    3914 > view matrix models
    3915 > #5,-0.1711,-0.05398,-0.98377,281.9,-0.77949,-0.60328,0.16868,1024.1,-0.60259,0.7957,0.061145,359.03,#7,0.13948,0.98389,0.11182,229.37,0.89493,-0.17359,0.41106,353.66,0.42385,0.042734,-0.90472,302>
    3916 > view matrix models
    3917 > #5,0.31548,0.11853,-0.9415,-53.054,-0.91235,0.3107,-0.2666,741.05,0.26093,0.94309,0.20617,-173.53,#7,-0.37042,0.92801,0.039805,229.5,0.81538,0.34539,-0.46461,354.44,-0.44491,-0.13965,-0.88462,302.1>
    3918 > ui mousemode right "translate selected models"> view matrix models
    3919 > #5,0.31548,0.11853,-0.9415,-41.293,-0.91235,0.3107,-0.2666,742.29,0.26093,0.94309,0.20617,-185.05,#7,-0.37042,0.92801,0.039805,241.26,0.81538,0.34539,-0.46461,355.68,-0.44491,-0.13965,-0.88462,290.57>
    3920 > view matrix models
    3921 > #5,0.31548,0.11853,-0.9415,-39.115,-0.91235,0.3107,-0.2666,741.63,0.26093,0.94309,0.20617,-182.57,#7,-0.37042,0.92801,0.039805,243.43,0.81538,0.34539,-0.46461,355.02,-0.44491,-0.13965,-0.88462,293.05>
    3922 > view matrix models
    3923 > #5,0.31548,0.11853,-0.9415,-38.981,-0.91235,0.3107,-0.2666,737.98,0.26093,0.94309,0.20617,-182.3,#7,-0.37042,0.92801,0.039805,243.57,0.81538,0.34539,-0.46461,351.37,-0.44491,-0.13965,-0.88462,293.32>
    3924 > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078
    3925 > (#7) to map postprocess.mrc (#1) using 3391 atoms 
    3926 average map value = 0.00607, steps = 2000 
    3927 shifted from previous position = 207 
    3928 rotated from previous position = 33.5 degrees 
    3929 atoms outside contour = 2860, contour level = 0.0066997 
    3930  
    3931 Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1)
    3932 coordinates: 
    3933 Matrix rotation and translation 
    3934 0.70129333 0.30350009 -0.64503902 -301.43057902 
    3935 -0.66567175 0.60257977 -0.44020305 479.70630653 
    3936 0.25508580 0.73809573 0.62461662 -80.49754857 
    3937 Axis 0.66517422 -0.50813923 -0.54711771 
    3938 Axis point 0.00000000 496.85702895 179.18523971 
    3939 Rotation angle (degrees) 62.33863827 
    3940 Shift along axis -400.21980655 
    3941  
    3942 Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1)
    3943 coordinates: 
    3944 Matrix rotation and translation 
    3945 -0.77442520 0.62630892 -0.08945806 247.17999696 
    3946 0.50617791 0.52854501 -0.68148668 349.61333079 
    3947 -0.37953857 -0.57304215 -0.72634232 290.47483922 
    3948 Axis 0.32647079 0.87328350 -0.36165279 
    3949 Axis point 77.01233711 0.00000000 210.18703682 
    3950 Rotation angle (degrees) 170.43966562 
    3951 Shift along axis 280.95756714 
    3952  
    3953 > view matrix models
    3954 > #5,0.70129,0.3035,-0.64504,-301.05,-0.66567,0.60258,-0.4402,479.69,0.25509,0.7381,0.62462,-80.042,#7,-0.77443,0.62631,-0.089458,247.56,0.50618,0.52855,-0.68149,349.6,-0.37954,-0.57304,-0.72634,290.93>
    3955 > ui mousemode right "rotate selected models"> view matrix models
    3956 > #5,0.64904,0.39252,-0.65167,-303.62,-0.72842,0.56773,-0.38351,532.01,0.21944,0.72361,0.6544,-52.392,#7,-0.74235,0.6436,-0.18627,248.07,0.57705,0.47287,-0.66589,350.12,-0.34049,-0.60181,-0.72242,291.23>
    3957 > view matrix models
    3958 > #5,0.61859,0.44518,-0.64742,-304.79,-0.7605,0.54632,-0.35097,560.31,0.19745,0.70947,0.67651,-33.203,#7,-0.72351,0.64567,-0.24422,248.45,0.61417,0.44056,-0.65476,350.4,-0.31516,-0.62372,-0.7153,291.42>
    3959 > view matrix models
    3960 > #5,0.61336,0.44471,-0.6527,-302.04,-0.7266,0.64166,-0.24561,514.88,0.30958,0.6249,0.7167,-63.763,#7,-0.71851,0.65119,-0.24434,248.41,0.5652,0.34194,-0.75075,351.82,-0.40534,-0.67752,-0.61374,291.11>
    3961 > view matrix models
    3962 > #5,0.61839,0.40672,-0.67244,-292.81,-0.59513,0.80117,-0.062717,396.87,0.51323,0.43898,0.73749,-111.61,#7,-0.71622,0.66727,-0.2044,248.02,0.4105,0.16596,-0.89663,354.07,-0.56438,-0.72609,-0.39278,289.88>
    3963 > view matrix models
    3964 > #5,0.62873,0.64782,-0.43015,-366.67,-0.73016,0.68211,-0.039965,517.79,0.26752,0.3392,0.90187,75.891,#7,-0.76739,0.44633,-0.46034,251.55,0.56833,0.14107,-0.81062,354.01,-0.29686,-0.88368,-0.36191,291.54>
    3965 > ui mousemode right "translate selected models"> view matrix models
    3966 > #5,0.62873,0.64782,-0.43015,-373.64,-0.73016,0.68211,-0.039965,516.13,0.26752,0.3392,0.90187,76.782,#7,-0.76739,0.44633,-0.46034,244.58,0.56833,0.14107,-0.81062,352.35,-0.29686,-0.88368,-0.36191,292.43>
    3967 > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078
    3968 > (#7) to map postprocess.mrc (#1) using 3391 atoms 
    3969 average map value = 0.006366, steps = 2000 
    3970 shifted from previous position = 68.3 
    3971 rotated from previous position = 12.9 degrees 
    3972 atoms outside contour = 2782, contour level = 0.0066997 
    3973  
    3974 Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1)
    3975 coordinates: 
    3976 Matrix rotation and translation 
    3977 0.62743406 0.74307018 -0.23275136 -389.00714335 
    3978 -0.75912757 0.65026798 0.02961206 547.56145841 
    3979 0.17335459 0.15810837 0.97208534 199.59025622 
    3980 Axis 0.08229454 -0.26008764 -0.96207174 
    3981 Axis point 303.22479500 634.96258447 0.00000000 
    3982 Rotation angle (degrees) 51.32561454 
    3983 Shift along axis -366.44727440 
    3984  
    3985 Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1)
    3986 coordinates: 
    3987 Matrix rotation and translation 
    3988 -0.77830940 0.25822657 -0.57232292 250.13871784 
    3989 0.60607608 0.07084719 -0.79224520 351.34780734 
    3990 -0.16403129 -0.96348312 -0.21164598 291.84550134 
    3991 Axis -0.30412633 -0.72514452 0.61779657 
    3992 Axis point 13.26729456 0.00000000 315.83389237 
    3993 Rotation angle (degrees) 163.64879838 
    3994 Shift along axis -150.55055819 
    3995  
    3996 > view matrix models
    3997 > #5,0.62743,0.74307,-0.23275,-393.66,-0.75913,0.65027,0.029612,544.8,0.17335,0.15811,0.97209,196.96,#7,-0.77831,0.25823,-0.57232,245.49,0.60608,0.070847,-0.79225,348.59,-0.16403,-0.96348,-0.21165,289.22>
    3998 > volume #1 level 0.007668> view matrix models
    3999 > #5,0.62743,0.74307,-0.23275,-389.57,-0.75913,0.65027,0.029612,546.54,0.17335,0.15811,0.97209,197.91,#7,-0.77831,0.25823,-0.57232,249.57,0.60608,0.070847,-0.79225,350.33,-0.16403,-0.96348,-0.21165,290.16>
    4000 > view matrix models
    4001 > #5,0.62743,0.74307,-0.23275,-394.31,-0.75913,0.65027,0.029612,546.08,0.17335,0.15811,0.97209,198.81,#7,-0.77831,0.25823,-0.57232,244.83,0.60608,0.070847,-0.79225,349.86,-0.16403,-0.96348,-0.21165,291.07>
    4002 > ui mousemode right "rotate selected models"> view matrix models
    4003 > #5,0.21109,0.74123,-0.6372,-187.17,-0.97471,0.11072,-0.1941,844.46,-0.073321,0.66206,0.74586,142.32,#7,-0.38725,0.6848,-0.61732,241.92,0.9212,0.25983,-0.28963,345.48,-0.037943,-0.68083,-0.73146,292.04>
    4004 > ui mousemode right "translate selected models"> view matrix models
    4005 > #5,0.21109,0.74123,-0.6372,-185.42,-0.97471,0.11072,-0.1941,853.15,-0.073321,0.66206,0.74586,142.55,#7,-0.38725,0.6848,-0.61732,243.67,0.9212,0.25983,-0.28963,354.17,-0.037943,-0.68083,-0.73146,292.27>
    4006 > view matrix models
    4007 > #5,0.21109,0.74123,-0.6372,-185.65,-0.97471,0.11072,-0.1941,852.57,-0.073321,0.66206,0.74586,140.9,#7,-0.38725,0.6848,-0.61732,243.44,0.9212,0.25983,-0.28963,353.58,-0.037943,-0.68083,-0.73146,290.62>
    4008 > ui mousemode right "rotate selected models"> view matrix models
    4009 > #5,0.003999,0.81501,-0.57943,-89.972,-0.94546,0.19182,0.26328,841.08,0.32573,0.54678,0.77132,-42.862,#7,-0.19816,0.64584,-0.73731,244.86,0.8937,-0.18986,-0.4065,358.33,-0.40252,-0.73949,-0.53957,289.33>
    4010 > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078
    4011 > (#7) to map postprocess.mrc (#1) using 3391 atoms 
    4012 average map value = 0.006182, steps = 2000 
    4013 shifted from previous position = 726 
    4014 rotated from previous position = 171 degrees 
    4015 atoms outside contour = 2996, contour level = 0.0076678 
    4016  
    4017 Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1)
    4018 coordinates: 
    4019 Matrix rotation and translation 
    4020 -0.50985198 0.62390399 0.59227929 352.88224092 
    4021 0.48726269 0.77683931 -0.39886807 -230.28494929 
    4022 -0.70896122 0.08523193 -0.70007820 614.27879090 
    4023 Axis 0.34700498 0.93273485 -0.09794507 
    4024 Axis point 349.83451264 0.00000000 206.65062897 
    4025 Rotation angle (degrees) 135.76999700 
    4026 Shift along axis -152.50848503 
    4027  
    4028 Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1)
    4029 coordinates: 
    4030 Matrix rotation and translation 
    4031 0.39041705 -0.50568852 -0.76932025 251.69547574 
    4032 -0.65506429 0.43457629 -0.61808917 352.53029652 
    4033 0.64688894 0.74526677 -0.16159250 289.30819786 
    4034 Axis 0.69154220 -0.71835123 -0.07576866 
    4035 Axis point 130.13070659 0.00000000 314.93649546 
    4036 Rotation angle (degrees) 99.68896785 
    4037 Shift along axis -101.10302239 
    4038  
    4039 > view matrix models
    4040 > #5,0.89829,0.066059,0.4344,-260.13,-0.42278,0.39926,0.81354,512.01,-0.1197,-0.91445,0.38658,717.07,#7,-0.87417,-0.4792,0.078683,243.99,0.36134,-0.75011,-0.55387,364.44,0.32444,-0.45575,0.82888,293.28>
    4041 > view matrix models
    4042 > #5,0.51536,0.72527,-0.45649,-344.11,-0.58927,0.68668,0.42572,475.17,0.62222,0.049593,0.78127,-19.189,#7,-0.67396,0.48582,-0.55656,239.68,0.4482,-0.32999,-0.8308,362.57,-0.58727,-0.80937,0.0046558,300.22>
    4043 > view matrix models
    4044 > #5,0.46109,0.74604,-0.48044,-322.46,-0.54373,0.66542,0.51144,463.26,0.70125,0.025407,0.71246,-60.599,#7,-0.62626,0.51461,-0.58564,239.69,0.41158,-0.41974,-0.80896,363.17,-0.66212,-0.74766,0.051065,299.25>
    4045 > ui mousemode right "translate selected models"> view matrix models
    4046 > #5,0.46109,0.74604,-0.48044,-319.66,-0.54373,0.66542,0.51144,457.08,0.70125,0.025407,0.71246,-62.663,#7,-0.62626,0.51461,-0.58564,242.49,0.41158,-0.41974,-0.80896,356.99,-0.66212,-0.74766,0.051065,297.18>
    4047 > view matrix models
    4048 > #5,0.46109,0.74604,-0.48044,-318.48,-0.54373,0.66542,0.51144,456.87,0.70125,0.025407,0.71246,-67.025,#7,-0.62626,0.51461,-0.58564,243.67,0.41158,-0.41974,-0.80896,356.78,-0.66212,-0.74766,0.051065,292.82>
    4049 > view matrix models
    4050 > #5,0.46109,0.74604,-0.48044,-314.54,-0.54373,0.66542,0.51144,452.06,0.70125,0.025407,0.71246,-67.762,#7,-0.62626,0.51461,-0.58564,247.61,0.41158,-0.41974,-0.80896,351.97,-0.66212,-0.74766,0.051065,292.08>
    4051 > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078
    4052 > (#7) to map postprocess.mrc (#1) using 3391 atoms 
    4053 average map value = 0.006379, steps = 2000 
    4054 shifted from previous position = 67.3 
    4055 rotated from previous position = 13.3 degrees 
    4056 atoms outside contour = 2933, contour level = 0.0076678 
    4057  
    4058 Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1)
    4059 coordinates: 
    4060 Matrix rotation and translation 
    4061 0.44864812 0.85024754 -0.27530707 -329.44673535 
    4062 -0.61386395 0.51706217 0.59650461 550.06356967 
    4063 0.64952745 -0.09861958 0.75391528 9.22943609 
    4064 Axis -0.37251122 -0.49561105 -0.78460505 
    4065 Axis point 271.63371182 632.46002380 0.00000000 
    4066 Rotation angle (degrees) 68.91130081 
    4067 Shift along axis -157.13644207 
    4068  
    4069 Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1)
    4070 coordinates: 
    4071 Matrix rotation and translation 
    4072 -0.62787187 0.32023832 -0.70938306 250.06408612 
    4073 0.51464398 -0.51292383 -0.68705947 351.06664711 
    4074 -0.58388225 -0.79646504 0.15724172 292.22359140 
    4075 Axis -0.42743859 -0.49032137 0.75952696 
    4076 Axis point 193.59344878 279.40290037 0.00000000 
    4077 Rotation angle (degrees) 172.64722909 
    4078 Shift along axis -57.07082358 
    4079  
    4080 > view matrix models
    4081 > #5,0.44865,0.85025,-0.27531,-336.59,-0.61386,0.51706,0.5965,546.49,0.64953,-0.09862,0.75392,3.5019,#7,-0.62787,0.32024,-0.70938,242.92,0.51464,-0.51292,-0.68706,347.49,-0.58388,-0.79647,0.15724,286.5>
    4082 > volume #1 level 0.006838> ui mousemode right "rotate selected models"> view
    4083 > matrix models
    4084 > #5,0.64185,0.35969,-0.67724,-301.3,-0.33561,0.92585,0.17367,210.96,0.68949,0.11582,0.71497,-98.634,#7,-0.72944,0.66664,-0.15332,236.09,0.14015,-0.07373,-0.98738,344.84,-0.66953,-0.74172,-0.039649,287.12>
    4085 > ui mousemode right "translate selected models"> view matrix models
    4086 > #5,0.64185,0.35969,-0.67724,-291.82,-0.33561,0.92585,0.17367,216.24,0.68949,0.11582,0.71497,-97.428,#7,-0.72944,0.66664,-0.15332,245.57,0.14015,-0.07373,-0.98738,350.12,-0.66953,-0.74172,-0.039649,288.32>
    4087 > view matrix models
    4088 > #5,0.64185,0.35969,-0.67724,-292.85,-0.33561,0.92585,0.17367,215.82,0.68949,0.11582,0.71497,-97.348,#7,-0.72944,0.66664,-0.15332,244.54,0.14015,-0.07373,-0.98738,349.7,-0.66953,-0.74172,-0.039649,288.4>
    4089 > view matrix models
    4090 > #5,0.64185,0.35969,-0.67724,-293.69,-0.33561,0.92585,0.17367,219.17,0.68949,0.11582,0.71497,-95.847,#7,-0.72944,0.66664,-0.15332,243.7,0.14015,-0.07373,-0.98738,353.04,-0.66953,-0.74172,-0.039649,289.91>
    4091 > view matrix models
    4092 > #5,0.64185,0.35969,-0.67724,-294.11,-0.33561,0.92585,0.17367,218.78,0.68949,0.11582,0.71497,-97.168,#7,-0.72944,0.66664,-0.15332,243.29,0.14015,-0.07373,-0.98738,352.65,-0.66953,-0.74172,-0.039649,288.58>
    4093 > ui mousemode right "translate selected models"> view matrix models
    4094 > #5,0.64185,0.35969,-0.67724,-298.59,-0.33561,0.92585,0.17367,215.26,0.68949,0.11582,0.71497,-99.717,#7,-0.72944,0.66664,-0.15332,238.8,0.14015,-0.07373,-0.98738,349.14,-0.66953,-0.74172,-0.039649,286.03>
    4095 > ui mousemode right "rotate selected models"> view matrix models
    4096 > #5,0.54906,0.059004,-0.83369,-150.22,-0.03859,0.99823,0.045234,11.057,0.83489,0.0073364,0.55037,-155.91,#7,-0.58181,0.80196,0.13547,235.99,-0.1703,0.042744,-0.98446,347.57,-0.79529,-0.59585,0.1117,283.55>
    4097 > ui mousemode right "translate selected models"> view matrix models
    4098 > #5,0.54906,0.059004,-0.83369,-141.32,-0.03859,0.99823,0.045234,18.757,0.83489,0.0073364,0.55037,-154.01,#7,-0.58181,0.80196,0.13547,244.89,-0.1703,0.042744,-0.98446,355.27,-0.79529,-0.59585,0.1117,285.45>
    4099 > view matrix models
    4100 > #5,0.54906,0.059004,-0.83369,-143.94,-0.03859,0.99823,0.045234,17.226,0.83489,0.0073364,0.55037,-153.35,#7,-0.58181,0.80196,0.13547,242.26,-0.1703,0.042744,-0.98446,353.73,-0.79529,-0.59585,0.1117,286.11>
    4101 > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078
    4102 > (#7) to map postprocess.mrc (#1) using 3391 atoms 
    4103 average map value = 0.006548, steps = 2000 
    4104 shifted from previous position = 258 
    4105 rotated from previous position = 39.9 degrees 
    4106 atoms outside contour = 2731, contour level = 0.006838 
    4107  
    4108 Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1)
    4109 coordinates: 
    4110 Matrix rotation and translation 
    4111 0.22428746 -0.36126596 -0.90508675 195.02323000 
    4112 0.53371593 0.82261567 -0.19608866 -259.73434724 
    4113 0.81537870 -0.43907899 0.37731577 12.95402397 
    4114 Axis -0.12432405 -0.88026230 0.45791027 
    4115 Axis point 174.57812190 0.00000000 94.74078612 
    4116 Rotation angle (degrees) 77.75399990 
    4117 Shift along axis 210.32005694 
    4118  
    4119 Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1)
    4120 coordinates: 
    4121 Matrix rotation and translation 
    4122 -0.17905812 0.85607757 0.48483955 249.94431746 
    4123 -0.70202348 0.23408177 -0.67258365 352.78061951 
    4124 -0.68927587 -0.46080031 0.55907231 291.03197901 
    4125 Axis 0.10791967 0.59830087 -0.79397067 
    4126 Axis point 325.32005194 156.97099682 -0.00000000 
    4127 Rotation angle (degrees) 101.12511134 
    4128 Shift along axis 6.97200511 
    4129  
    4130 > view matrix models
    4131 > #5,0.22429,-0.36127,-0.90509,195.35,0.53372,0.82262,-0.19609,-260.19,0.81538,-0.43908,0.37732,14.033,#7,-0.17906,0.85608,0.48484,250.27,-0.70202,0.23408,-0.67258,352.32,-0.68928,-0.4608,0.55907,292.11>
    4132 > ui mousemode right "rotate selected models"> view matrix models
    4133 > #5,0.70978,0.63664,0.3015,-346.75,-0.55163,0.76852,-0.32417,366.41,-0.43809,0.063771,0.89667,585.7,#7,-0.8152,-0.28709,-0.50302,265.81,0.3645,0.42064,-0.83078,353.4,0.4501,-0.8606,-0.23826,302.65>
    4134 > view matrix models
    4135 > #5,0.66322,0.65557,0.36106,-322.61,-0.53819,0.753,-0.37862,360.26,-0.52009,0.056794,0.85222,631.48,#7,-0.77134,-0.34197,-0.53675,266.59,0.35247,0.47268,-0.80767,352.76,0.5299,-0.81218,-0.24406,302.38>
    4136 > ui mousemode right "translate selected models"> view matrix models
    4137 > #5,0.66322,0.65557,0.36106,-337.36,-0.53819,0.753,-0.37862,356.84,-0.52009,0.056794,0.85222,616.61,#7,-0.77134,-0.34197,-0.53675,251.84,0.35247,0.47268,-0.80767,349.34,0.5299,-0.81218,-0.24406,287.51>
    4138 > view matrix models
    4139 > #5,0.66322,0.65557,0.36106,-338.79,-0.53819,0.753,-0.37862,355.48,-0.52009,0.056794,0.85222,617.05,#7,-0.77134,-0.34197,-0.53675,250.41,0.35247,0.47268,-0.80767,347.98,0.5299,-0.81218,-0.24406,287.95>
    4140 > ui mousemode right "translate selected models"> ui mousemode right "rotate
    4141 > selected models"> view matrix models
    4142 > #5,0.2758,-0.8891,0.36528,432.91,0.72305,-0.058499,-0.68831,-94.846,0.63335,0.45395,0.62673,-197.02,#7,-0.06808,-0.45564,0.88756,243.51,-0.72132,0.63708,0.27172,337.87,-0.68925,-0.62171,-0.37203,285.07>
    4143 > view matrix models
    4144 > #5,0.061441,-0.99715,0.043751,569.33,0.38122,0.063955,0.92227,175.75,-0.92244,-0.039987,0.38406,845.38,#7,0.15128,-0.1325,0.97957,240.38,-0.34927,-0.93422,-0.072424,354.81,0.92473,-0.33118,-0.1876,283.91>
    4145 > view matrix models
    4146 > #5,-0.7462,-0.66541,-0.02044,905.19,-0.31624,0.32729,0.89043,475.81,-0.58581,0.67091,-0.45465,337.89,#7,0.86797,0.007227,0.49657,243.37,0.27545,-0.83901,-0.46925,357.5,0.41323,0.54407,-0.73022,278.66>
    4147 > view matrix models
    4148 > #5,-0.63461,-0.77228,-0.029406,879.23,-0.46761,0.3534,0.81022,546.54,-0.61532,0.52792,-0.58539,395.94,#7,0.78106,0.00043442,0.62446,242.47,0.41464,-0.74809,-0.51811,357.22,0.46692,0.6636,-0.58448,276.74>
    4149 > ui mousemode right "translate selected models"> view matrix models
    4150 > #5,-0.63461,-0.77228,-0.029406,884.6,-0.46761,0.3534,0.81022,541.46,-0.61532,0.52792,-0.58539,415.9,#7,0.78106,0.00043442,0.62446,247.84,0.41464,-0.74809,-0.51811,352.14,0.46692,0.6636,-0.58448,296.71>
    4151 > ui mousemode right "translate selected models"> ui mousemode right "rotate
    4152 > selected models"> view matrix models
    4153 > #5,-0.82896,-0.42798,-0.36008,847.56,0.24322,-0.85558,0.45698,542.55,-0.50366,0.29124,0.81333,541.12,#7,0.88545,0.37022,0.28091,246.87,-0.03966,-0.54206,0.8394,340.89,0.46304,-0.75439,-0.46528,308.7>
    4154 > view matrix models
    4155 > #5,-0.59898,0.79915,0.050885,309.59,-0.63535,-0.51296,0.57723,928.58,0.4874,0.31342,0.81499,-29.926,#7,0.41919,0.053021,-0.90635,256.52,0.75134,-0.58068,0.31353,345.88,-0.50967,-0.8124,-0.28325,306.47>
    4156 > view matrix models
    4157 > #5,0.3685,0.76002,-0.53532,-269.99,-0.91323,0.40363,-0.055587,712.28,0.17383,0.50936,0.84282,80.444,#7,-0.54093,0.57584,-0.61303,248.38,0.80507,0.14353,-0.57555,345.12,-0.24344,-0.80487,-0.54123,308.48>
    4158 > view matrix models
    4159 > #5,0.41519,0.70403,-0.57616,-279.58,-0.77489,0.60549,0.18146,579.3,0.47661,0.37112,0.79694,-45.734,#7,-0.57639,0.60892,-0.54498,247.59,0.63691,-0.083088,-0.76645,348.1,-0.51198,-0.78887,-0.33993,306.62>
    4160 > ui mousemode right "translate selected models"> view matrix models
    4161 > #5,0.41519,0.70403,-0.57616,-278.89,-0.77489,0.60549,0.18146,587.01,0.47661,0.37112,0.79694,-58.465,#7,-0.57639,0.60892,-0.54498,248.29,0.63691,-0.083088,-0.76645,355.81,-0.51198,-0.78887,-0.33993,293.89>
    4162 > view matrix models
    4163 > #5,0.41519,0.70403,-0.57616,-281.13,-0.77489,0.60549,0.18146,585.25,0.47661,0.37112,0.79694,-62.233,#7,-0.57639,0.60892,-0.54498,246.05,0.63691,-0.083088,-0.76645,354.05,-0.51198,-0.78887,-0.33993,290.12>
    4164 > view matrix models
    4165 > #5,0.41519,0.70403,-0.57616,-281.48,-0.77489,0.60549,0.18146,586.28,0.47661,0.37112,0.79694,-63.996,#7,-0.57639,0.60892,-0.54498,245.7,0.63691,-0.083088,-0.76645,355.08,-0.51198,-0.78887,-0.33993,288.35>
    4166 > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078
    4167 > (#7) to map postprocess.mrc (#1) using 3391 atoms 
    4168 average map value = 0.006232, steps = 2000 
    4169 shifted from previous position = 208 
    4170 rotated from previous position = 32.9 degrees 
    4171 atoms outside contour = 2802, contour level = 0.006838 
    4172  
    4173 Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1)
    4174 coordinates: 
    4175 Matrix rotation and translation 
    4176 0.49426653 0.86558393 -0.08040543 -344.35273626 
    4177 -0.86785105 0.49667874 0.01203166 664.87484119 
    4178 0.05035008 0.06383309 0.99668961 305.04246661 
    4179 Axis 0.02978581 -0.07518439 -0.99672469 
    4180 Axis point 381.74609833 608.33370844 0.00000000 
    4181 Rotation angle (degrees) 60.40819812 
    4182 Shift along axis -364.28839048 
    4183  
    4184 Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1)
    4185 coordinates: 
    4186 Matrix rotation and translation 
    4187 -0.66793058 0.12502192 -0.73364723 253.87954964 
    4188 0.74386548 0.08157435 -0.66333233 352.68043687 
    4189 -0.02308428 -0.98879479 -0.14748549 291.96412449 
    4190 Axis -0.32647729 -0.71277854 0.62077317 
    4191 Axis point -26.30236893 0.00000000 337.75189081 
    4192 Rotation angle (degrees) 150.10277176 
    4193 Shift along axis -153.02546054 
    4194  
    4195 > view matrix models
    4196 > #5,0.49427,0.86558,-0.080405,-352.99,-0.86785,0.49668,0.012032,666.63,0.05035,0.063833,0.99669,306.76,#7,-0.66793,0.12502,-0.73365,245.24,0.74387,0.081574,-0.66333,354.44,-0.023084,-0.98879,-0.14749,293.68>
    4197 > view matrix models
    4198 > #5,0.49427,0.86558,-0.080405,-354.63,-0.86785,0.49668,0.012032,665.67,0.05035,0.063833,0.99669,304.22,#7,-0.66793,0.12502,-0.73365,243.6,0.74387,0.081574,-0.66333,353.47,-0.023084,-0.98879,-0.14749,291.14>
    4199 > view matrix models
    4200 > #5,0.49427,0.86558,-0.080405,-353.85,-0.86785,0.49668,0.012032,665.32,0.05035,0.063833,0.99669,305.73,#7,-0.66793,0.12502,-0.73365,244.38,0.74387,0.081574,-0.66333,353.12,-0.023084,-0.98879,-0.14749,292.65>
    4201 > ui mousemode right "rotate selected models"> view matrix models
    4202 > #5,0.59564,0.78626,0.1643,-364.93,-0.79935,0.56008,0.2176,619.08,0.079066,-0.26095,0.96211,402.72,#7,-0.74059,-0.13111,-0.65904,246.09,0.67177,-0.12148,-0.73073,355.26,0.015749,-0.9839,0.17805,290.59>
    4203 > view matrix models
    4204 > #5,0.61081,0.63952,0.46683,-298.64,-0.73957,0.67137,0.047949,532.75,-0.28275,-0.37454,0.88305,643,#7,-0.71257,-0.44546,-0.54205,248.22,0.58327,0.053267,-0.81053,354.05,0.38993,-0.89372,0.22186,290.12>
    4205 > view matrix models
    4206 > #5,0.58754,0.80917,-0.0055779,-381.16,-0.71413,0.52175,0.46669,602.88,0.38054,-0.27022,0.8844,228.9,#7,-0.74423,0.040286,-0.66671,244.59,0.60646,-0.37752,-0.69978,357.26,-0.27989,-0.92513,0.25653,289.08>
    4207 > view matrix models
    4208 > #5,0.59766,0.78541,-0.16105,-390.01,-0.59194,0.56775,0.57207,524.88,0.54075,-0.24657,0.80424,123.44,#7,-0.75528,0.19229,-0.62656,242.95,0.48161,-0.48557,-0.72957,358.22,-0.44453,-0.85279,0.27413,288.05>
    4209 > ui mousemode right "translate selected models"> view matrix models
    4210 > #5,0.59766,0.78541,-0.16105,-390.28,-0.59194,0.56775,0.57207,520.84,0.54075,-0.24657,0.80424,131.04,#7,-0.75528,0.19229,-0.62656,242.68,0.48161,-0.48557,-0.72957,354.18,-0.44453,-0.85279,0.27413,295.66>
    4211 > ui mousemode right "translate selected models"> view matrix models
    4212 > #5,0.59766,0.78541,-0.16105,-387.3,-0.59194,0.56775,0.57207,520.83,0.54075,-0.24657,0.80424,129.09,#7,-0.75528,0.19229,-0.62656,245.67,0.48161,-0.48557,-0.72957,354.17,-0.44453,-0.85279,0.27413,293.71>
    4213 > view matrix models
    4214 > #5,0.59766,0.78541,-0.16105,-388.87,-0.59194,0.56775,0.57207,517.58,0.54075,-0.24657,0.80424,128.32,#7,-0.75528,0.19229,-0.62656,244.1,0.48161,-0.48557,-0.72957,350.92,-0.44453,-0.85279,0.27413,292.94>
    4215 > view matrix models
    4216 > #5,0.59766,0.78541,-0.16105,-387.38,-0.59194,0.56775,0.57207,518.01,0.54075,-0.24657,0.80424,126.64,#7,-0.75528,0.19229,-0.62656,245.59,0.48161,-0.48557,-0.72957,351.35,-0.44453,-0.85279,0.27413,291.26>
    4217 > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078
    4218 > (#7) to map postprocess.mrc (#1) using 3391 atoms 
    4219 average map value = 0.006304, steps = 2000 
    4220 shifted from previous position = 21.9 
    4221 rotated from previous position = 4.12 degrees 
    4222 atoms outside contour = 2805, contour level = 0.006838 
    4223  
    4224 Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1)
    4225 coordinates: 
    4226 Matrix rotation and translation 
    4227 0.63160113 0.74678337 -0.20831371 -392.06980546 
    4228 -0.55856585 0.62464466 0.54573182 477.26828316 
    4229 0.53766549 -0.22832791 0.81165397 121.78106461 
    4230 Axis -0.45774393 -0.44113837 -0.77192450 
    4231 Axis point 263.86758263 731.84909322 0.00000000 
    4232 Rotation angle (degrees) 57.72727694 
    4233 Shift along axis -125.07956684 
    4234  
    4235 Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1)
    4236 coordinates: 
    4237 Matrix rotation and translation 
    4238 -0.78219153 0.23399400 -0.57742810 249.19255277 
    4239 0.43600266 -0.45646565 -0.77559061 351.79976917 
    4240 -0.44505964 -0.85842060 0.25502156 290.77365896 
    4241 Axis -0.32441286 -0.51843579 0.79118937 
    4242 Axis point 170.65668667 280.82372829 0.00000000 
    4243 Rotation angle (degrees) 172.66552652 
    4244 Shift along axis -33.16983103 
    4245  
    4246 > hide #7 models> select subtract #71934 atoms, 1972 bonds, 238 residues, 1
    4247 > model selected 
    4248 > show #5 models> show #4 models> show #3 models> select add #73391 atoms,
    4249 > 3455 bonds, 419 residues, 2 models selected 
    4250 > show #7 models> view matrix models
    4251 > #5,0.6316,0.74678,-0.20831,-292.46,-0.55857,0.62464,0.54573,428.58,0.53767,-0.22833,0.81165,182.31,#7,-0.78219,0.23399,-0.57743,348.81,0.436,-0.45647,-0.77559,303.11,-0.44506,-0.85842,0.25502,351.3>
    4252 > view matrix models
    4253 > #5,0.6316,0.74678,-0.20831,-284.18,-0.55857,0.62464,0.54573,440.14,0.53767,-0.22833,0.81165,179.11,#7,-0.78219,0.23399,-0.57743,357.08,0.436,-0.45647,-0.77559,314.67,-0.44506,-0.85842,0.25502,348.1>
    4254 > volume #1 level 0.008913> ui mousemode right "rotate selected models"> view
    4255 > matrix models
    4256 > #5,0.63195,0.73976,-0.23108,-283.85,-0.52078,0.62615,0.58029,431.7,0.57397,-0.24637,0.78094,172.09,#7,-0.78195,0.25602,-0.56833,356.54,0.40014,-0.49293,-0.7726,325.92,-0.47795,-0.83155,0.283,357.1>
    4257 > view matrix models
    4258 > #5,0.40608,0.87634,-0.25909,-252.01,-0.912,0.40659,-0.054141,543.3,0.057898,0.25828,0.96433,220.46,#7,-0.59113,0.30885,-0.74511,311.8,0.80331,0.14227,-0.57832,177.81,-0.072604,-0.94041,-0.3322,284.12>
    4259 > view matrix models
    4260 > #5,0.43696,0.86229,-0.25597,-257.59,-0.88687,0.46051,0.03736,531.74,0.15009,0.21069,0.96596,204.43,#7,-0.61822,0.30272,-0.72537,318.41,0.77105,0.054404,-0.63445,194.05,-0.1526,-0.95152,-0.26705,302.95>
    4261 > view matrix models
    4262 > #5,0.62956,0.71297,-0.30874,-281.54,-0.44846,0.65796,0.60495,408.43,0.63446,-0.24239,0.73397,154.9,#7,-0.77707,0.33111,-0.53528,352.85,0.32379,-0.51899,-0.79108,353.49,-0.53973,-0.78805,0.29608,378.63>
    4263 > ui mousemode right "translate selected models"> view matrix models
    4264 > #5,0.62956,0.71297,-0.30874,-274.52,-0.44846,0.65796,0.60495,406.86,0.63446,-0.24239,0.73397,108.93,#7,-0.77707,0.33111,-0.53528,359.87,0.32379,-0.51899,-0.79108,351.92,-0.53973,-0.78805,0.29608,332.66>
    4265 > ui mousemode right "rotate selected models"> view matrix models
    4266 > #5,0.45327,0.82091,-0.34735,-250.42,-0.83142,0.24886,-0.4968,532.21,-0.32138,0.51397,0.79533,221.4,#7,-0.62908,0.38911,-0.67295,325.76,0.74019,0.56429,-0.36565,183.97,0.23746,-0.72813,-0.64299,173.91>
    4267 > ui mousemode right "rotate selected models"> ui mousemode right "translate
    4268 > selected models"> view matrix models
    4269 > #5,0.45327,0.82091,-0.34735,-244.8,-0.83142,0.24886,-0.4968,566.76,-0.32138,0.51397,0.79533,212.32,#7,-0.62908,0.38911,-0.67295,331.38,0.74019,0.56429,-0.36565,218.51,0.23746,-0.72813,-0.64299,164.84>
    4270 > ui mousemode right "translate selected models"> view matrix models
    4271 > #5,0.45327,0.82091,-0.34735,-204.98,-0.83142,0.24886,-0.4968,685.14,-0.32138,0.51397,0.79533,339.22,#7,-0.62908,0.38911,-0.67295,371.2,0.74019,0.56429,-0.36565,336.89,0.23746,-0.72813,-0.64299,291.74>
    4272 > view matrix models
    4273 > #5,0.45327,0.82091,-0.34735,-225.24,-0.83142,0.24886,-0.4968,639.6,-0.32138,0.51397,0.79533,355.95,#7,-0.62908,0.38911,-0.67295,350.95,0.74019,0.56429,-0.36565,291.36,0.23746,-0.72813,-0.64299,308.46>
    4274 > view matrix models
    4275 > #5,0.45327,0.82091,-0.34735,-227.45,-0.83142,0.24886,-0.4968,629.87,-0.32138,0.51397,0.79533,380.08,#7,-0.62908,0.38911,-0.67295,348.74,0.74019,0.56429,-0.36565,281.62,0.23746,-0.72813,-0.64299,332.6>
    4276 > view matrix models
    4277 > #5,0.45327,0.82091,-0.34735,-218.84,-0.83142,0.24886,-0.4968,647.15,-0.32138,0.51397,0.79533,373.95,#7,-0.62908,0.38911,-0.67295,357.34,0.74019,0.56429,-0.36565,298.9,0.23746,-0.72813,-0.64299,326.46>
    4278 > view matrix models
    4279 > #5,0.45327,0.82091,-0.34735,-221.31,-0.83142,0.24886,-0.4968,646.06,-0.32138,0.51397,0.79533,381.19,#7,-0.62908,0.38911,-0.67295,354.87,0.74019,0.56429,-0.36565,297.81,0.23746,-0.72813,-0.64299,333.71>
    4280 > view matrix models
    4281 > #5,0.45327,0.82091,-0.34735,-222.46,-0.83142,0.24886,-0.4968,654.54,-0.32138,0.51397,0.79533,383.99,#7,-0.62908,0.38911,-0.67295,353.72,0.74019,0.56429,-0.36565,306.29,0.23746,-0.72813,-0.64299,336.51>
    4282 > view matrix models
    4283 > #5,0.45327,0.82091,-0.34735,-222.54,-0.83142,0.24886,-0.4968,652.85,-0.32138,0.51397,0.79533,385.1,#7,-0.62908,0.38911,-0.67295,353.65,0.74019,0.56429,-0.36565,304.6,0.23746,-0.72813,-0.64299,337.62>
    4284 > fitmap sel inMap #1Fit molecules AlphaFold Q9JIF7 (#5), AlphaFold P84078
    4285 > (#7) to map postprocess.mrc (#1) using 3391 atoms 
    4286 average map value = 0.008387, steps = 2000 
    4287 shifted from previous position = 135 
    4288 rotated from previous position = 20.3 degrees 
    4289 atoms outside contour = 2803, contour level = 0.0089126 
    4290  
    4291 Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1)
    4292 coordinates: 
    4293 Matrix rotation and translation 
    4294 0.55409690 0.62511695 -0.54973213 -218.65297228 
    4295 -0.83234882 0.40563315 -0.37769984 602.45005605 
    4296 -0.01311700 0.66685121 0.74507543 146.75071393 
    4297 Axis 0.55807704 -0.28669981 -0.77868687 
    4298 Axis point 393.46986018 265.29039526 -0.00000000 
    4299 Rotation angle (degrees) 69.36565182 
    4300 Shift along axis -409.02037338 
    4301  
    4302 Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1)
    4303 coordinates: 
    4304 Matrix rotation and translation 
    4305 -0.69444730 0.56770586 -0.44210067 356.86595497 
    4306 0.71286713 0.45931644 -0.52995175 302.68762913 
    4307 -0.09779261 -0.68318260 -0.72366991 332.32740848 
    4308 Axis -0.37941968 -0.85255192 0.35943835 
    4309 Axis point 85.30361552 0.00000000 245.10157583 
    4310 Rotation angle (degrees) 168.35027896 
    4311 Shift along axis -274.00766921 
    4312  
    4313 > ui mousemode right "rotate selected models"> view matrix models
    4314 > #5,0.38512,0.91817,0.09297,-196.08,-0.61509,0.18027,0.76758,634.48,0.688,-0.3528,0.63418,136.81,#7,-0.56549,-0.036498,-0.82395,348.16,0.5934,-0.71183,-0.37573,301.8,-0.5728,-0.7014,0.42419,357.36>
    4315 > view matrix models
    4316 > #5,0.26988,0.96152,-0.051356,-178.93,-0.48414,0.18161,0.85594,603.78,0.83233,-0.20614,0.51452,70.825,#7,-0.46775,0.11753,-0.87601,325.15,0.4687,-0.8073,-0.35858,339.96,-0.74935,-0.57832,0.32253,433.9>
    4317 > focus selUnknown command: focus sel 
    4318 > ui mousemode right "rotate selected models"> ui mousemode right "translate
    4319 > selected models"> view matrix models
    4320 > #5,0.26988,0.96152,-0.051356,-155.72,-0.48414,0.18161,0.85594,605.27,0.83233,-0.20614,0.51452,71.95,#7,-0.46775,0.11753,-0.87601,348.35,0.4687,-0.8073,-0.35858,341.45,-0.74935,-0.57832,0.32253,435.02>
    4321 > view matrix models
    4322 > #5,0.26988,0.96152,-0.051356,-227.82,-0.48414,0.18161,0.85594,543.16,0.83233,-0.20614,0.51452,120.55,#7,-0.46775,0.11753,-0.87601,276.25,0.4687,-0.8073,-0.35858,279.34,-0.74935,-0.57832,0.32253,483.63>
    4323 > select subtract #71934 atoms, 1972 bonds, 238 residues, 1 model selected 
    4324 > select add #73391 atoms, 3455 bonds, 419 residues, 2 models selected 
    4325 > select clear> hide #5 models> show #5 models> hide #5 models> show #5
    4326 > models> select add #71457 atoms, 1483 bonds, 181 residues, 1 model selected 
    4327 > view matrix models
    4328 > #7,-0.46775,0.11753,-0.87601,264.54,0.4687,-0.8073,-0.35858,282.89,-0.74935,-0.57832,0.32253,480.54>
    4329 > view matrix models
    4330 > #7,-0.46775,0.11753,-0.87601,312.97,0.4687,-0.8073,-0.35858,321.84,-0.74935,-0.57832,0.32253,339.06>
    4331 > view matrix models
    4332 > #7,-0.46775,0.11753,-0.87601,356.18,0.4687,-0.8073,-0.35858,311.73,-0.74935,-0.57832,0.32253,325.59>
    4333 > ui mousemode right "rotate selected models"> view matrix models
    4334 > #7,-0.31289,0.30669,-0.89891,354.87,0.77534,0.62912,-0.05524,297.38,0.54858,-0.71425,-0.43463,333.76>
    4335 > view matrix models
    4336 > #7,-0.32942,0.33444,-0.88297,354.5,0.79728,0.59949,-0.070384,297.77,0.50579,-0.72716,-0.46413,333.99>
    4337 > ui mousemode right "translate selected models"> view matrix models
    4338 > #7,-0.32942,0.33444,-0.88297,356.39,0.79728,0.59949,-0.070384,317.3,0.50579,-0.72716,-0.46413,340>
    4339 > view matrix models
    4340 > #7,-0.32942,0.33444,-0.88297,353.93,0.79728,0.59949,-0.070384,306.29,0.50579,-0.72716,-0.46413,336.94>
    4341 > ui mousemode right "rotate selected models"> view matrix models
    4342 > #7,-0.36734,0.92837,-0.056483,343.26,0.7376,0.32778,0.59035,304.43,0.56658,0.1752,-0.80517,331.1>
    4343 > view matrix models
    4344 > #7,0.96817,0.16059,-0.19199,353.21,0.24775,-0.50581,0.8263,309.63,0.035584,-0.84757,-0.52949,337.67>
    4345 > view matrix models
    4346 > #7,-0.44229,0.45848,-0.77083,351.91,0.81471,0.56474,-0.13157,307.02,0.375,-0.68619,-0.62331,337.37>
    4347 > view matrix models
    4348 > #7,-0.4761,0.85565,0.20294,342.08,0.87815,0.45036,0.16131,306.29,0.046626,0.25502,-0.96581,330.55>
    4349 > view matrix models
    4350 > #7,-0.65814,-0.599,-0.45613,359.07,-0.54692,0.79672,-0.25712,303.51,0.51742,0.080245,-0.85196,332.17>
    4351 > view matrix models
    4352 > #7,-0.94065,-0.24006,-0.23988,354,-0.067482,0.82504,-0.56104,305.98,0.33259,-0.51155,-0.79227,336.81>
    4353 > focus selUnknown command: focus sel 
    4354 > fitmap sel inMap #1Fit molecule AlphaFold P84078 (#7) to map postprocess.mrc
    4355 > (#1) using 1457 atoms 
    4356 average map value = 0.008691, steps = 80 
    4357 shifted from previous position = 2.77 
    4358 rotated from previous position = 17.2 degrees 
    4359 atoms outside contour = 813, contour level = 0.0089126 
    4360  
    4361 Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1)
    4362 coordinates: 
    4363 Matrix rotation and translation 
    4364 -0.95086316 -0.13233492 -0.27990481 353.75859723 
    4365 -0.04679788 0.95509568 -0.29257849 304.12819349 
    4366 0.30605423 -0.26510316 -0.91435830 333.82641064 
    4367 Axis 0.04634790 -0.98844918 0.14429168 
    4368 Axis point 155.79634475 0.00000000 217.07990743 
    4369 Rotation angle (degrees) 162.75830016 
    4370 Shift along axis -236.05092359 
    4371  
    4372 > view matrix models
    4373 > #7,0.89646,-0.11615,-0.42763,357.57,0.15108,0.98733,0.048544,301.99,0.41657,-0.10812,0.90265,321.02>
    4374 > view matrix models
    4375 > #7,0.24003,-0.9594,-0.14808,362.3,0.61142,0.030929,0.7907,306.62,-0.75402,-0.28033,0.59403,322.62>
    4376 > view matrix models
    4377 > #7,0.82938,0.2793,-0.48386,354.26,0.55336,-0.29144,0.78029,309.49,0.076921,-0.91491,-0.39627,336>
    4378 > fitmap sel inMap #1Fit molecule AlphaFold P84078 (#7) to map postprocess.mrc
    4379 > (#1) using 1457 atoms 
    4380 average map value = 0.008533, steps = 104 
    4381 shifted from previous position = 5.88 
    4382 rotated from previous position = 26.3 degrees 
    4383 atoms outside contour = 806, contour level = 0.0089126 
    4384  
    4385 Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1)
    4386 coordinates: 
    4387 Matrix rotation and translation 
    4388 0.70793762 0.63970410 -0.29933753 354.19362259 
    4389 0.63728879 -0.39588546 0.66116388 305.25131134 
    4390 0.30444588 -0.65882725 -0.68793847 333.84744266 
    4391 Axis -0.90937970 -0.41596369 -0.00166398 
    4392 Axis point 0.00000000 150.36639145 138.65066871 
    4393 Rotation angle (degrees) 133.46751174 
    4394 Shift along axis -449.62546628 
    4395  
    4396 > view matrix models
    4397 > #7,0.65944,0.60816,-0.4419,355.31,0.75098,-0.50616,0.42407,307.94,0.034231,-0.61151,-0.7905,333.63>
    4398 > view matrix models
    4399 > #7,0.67477,0.61006,-0.41535,355.15,0.7183,-0.41358,0.55946,306.19,0.16952,-0.67585,-0.71728,333.97>
    4400 > view matrix models
    4401 > #7,0.99296,-0.033915,-0.11349,359.54,0.10378,-0.21285,0.97156,300.76,-0.057107,-0.9765,-0.20783,333.06>
    4402 > view matrix models
    4403 > #7,0.79178,-0.31663,-0.52233,364.35,-0.036918,-0.87839,0.47651,309.67,-0.60968,-0.35801,-0.70719,329.77>
    4404 > view matrix models
    4405 > #7,-0.084214,-0.71401,0.69505,358.74,0.043059,-0.69949,-0.71335,315.77,0.99552,-0.030146,0.089651,324.37>
    4406 > view matrix models
    4407 > #7,-0.72644,-0.50945,0.46125,357.34,-0.639,0.25371,-0.72616,306.16,0.25292,-0.82225,-0.50984,334.1>
    4408 > fitmap sel inMap #1Fit molecule AlphaFold P84078 (#7) to map postprocess.mrc
    4409 > (#1) using 1457 atoms 
    4410 average map value = 0.009965, steps = 96 
    4411 shifted from previous position = 4.5 
    4412 rotated from previous position = 20.2 degrees 
    4413 atoms outside contour = 674, contour level = 0.0089126 
    4414  
    4415 Position of AlphaFold P84078 (#7) relative to postprocess.mrc (#1)
    4416 coordinates: 
    4417 Matrix rotation and translation 
    4418 -0.82078799 -0.53173104 0.20873226 354.88942843 
    4419 -0.51806242 0.53896583 -0.66417403 308.12027683 
    4420 0.24066240 -0.65328242 -0.71784655 333.36238943 
    4421 Axis 0.29921665 -0.87719085 0.37550715 
    4422 Axis point 228.19071418 0.00000000 234.53252280 
    4423 Rotation angle (degrees) 178.95714657 
    4424 Shift along axis -38.91150075 
    4425  
    4426 > volume #1 level 0.01071> select subtract #7Nothing selected 
    4427 > volume #1 level 0.009051> volume #1 level 0.008083> select add #22 models
    4428 > selected 
    4429 > select subtract #2Nothing selected 
    4430 > show #!2 models> volume #2 level 0.09363> volume #2 level 0.1809> hide #!2
    4431 > models> hide #5 models> show #5 models> select add #57501 atoms, 7619 bonds,
    4432 > 953 residues, 1 model selected 
    4433 > ui mousemode right zoom> ui mousemode right "translate selected models">
    4434 > view matrix models
    4435 > #5,0.26988,0.96152,-0.051356,-138.83,-0.48414,0.18161,0.85594,363.4,0.83233,-0.20614,0.51452,412.62>
    4436 > view matrix models
    4437 > #5,0.26988,0.96152,-0.051356,215.52,-0.48414,0.18161,0.85594,313.06,0.83233,-0.20614,0.51452,481.6>
    4438 > view matrix models
    4439 > #5,0.26988,0.96152,-0.051356,87.067,-0.48414,0.18161,0.85594,304.38,0.83233,-0.20614,0.51452,348.45>
    4440 > view matrix models
    4441 > #5,0.26988,0.96152,-0.051356,199.47,-0.48414,0.18161,0.85594,297.27,0.83233,-0.20614,0.51452,248.55>
    4442 > view matrix models
    4443 > #5,0.26988,0.96152,-0.051356,281.71,-0.48414,0.18161,0.85594,328.06,0.83233,-0.20614,0.51452,368.25>
    4444 > ui mousemode right "rotate selected models"> view matrix models
    4445 > #5,0.60313,-0.5776,-0.5501,288.13,-0.33332,-0.80907,0.48405,332.63,-0.72466,-0.10859,-0.6805,378.28>
    4446 > view matrix models
    4447 > #5,0.083723,0.17341,-0.98128,289.92,-0.76391,0.64349,0.048538,332.57,0.63987,0.74555,0.18634,368.33>
    4448 > ui mousemode right "translate selected models"> view matrix models
    4449 > #5,0.083723,0.17341,-0.98128,246.28,-0.76391,0.64349,0.048538,203.76,0.63987,0.74555,0.18634,339.11>
    4450 > ui mousemode right "rotate selected models"> view matrix models
    4451 > #5,0.42104,-0.31907,-0.84907,246.08,-0.41555,0.76422,-0.49324,206.34,0.80626,0.5605,0.18918,339.26>
    4452 > view matrix models
    4453 > #5,0.27316,-0.96179,0.01842,242.35,0.48586,0.12142,-0.86556,208.8,0.83025,0.24539,0.50046,338>
    4454 > view matrix models
    4455 > #5,0.018184,-0.95114,0.30824,240.9,0.66648,-0.21828,-0.71286,208.35,0.7453,0.2184,0.62994,337.38>
    4456 > view matrix models
    4457 > #5,-0.86492,-0.14327,0.48102,239.29,0.34551,-0.86511,0.3636,203.59,0.36405,0.48068,0.79775,336.3>
    4458 > view matrix models
    4459 > #5,-0.73157,-0.37278,0.57082,239.05,0.52599,-0.8413,0.12468,204.76,0.43376,0.39146,0.81155,336.32>
    4460 > view matrix models
    4461 > #5,-0.1881,-0.86705,0.46136,240.06,0.71994,-0.44124,-0.53572,207.68,0.66806,0.23138,0.70722,336.99>
    4462 > view matrix models
    4463 > #5,0.24785,-0.96728,0.054255,242.18,0.51183,0.083186,-0.85505,208.78,0.82256,0.23969,0.5157,337.93>
    4464 > ui mousemode right "rotate selected models"> view matrix models
    4465 > #5,-0.084382,-0.94393,-0.31919,245.07,0.79715,0.12825,-0.59001,206.49,0.59786,-0.30423,0.74163,338.2>
    4466 > view matrix models
    4467 > #5,0.21946,-0.83157,-0.51022,245.51,0.67192,0.508,-0.53894,205.44,0.70736,-0.22456,0.67023,338.28>
    4468 > view matrix models
    4469 > #5,0.50938,-0.48951,-0.70776,245.45,0.33656,0.87026,-0.35967,203.97,0.792,-0.054996,0.60804,338.12>
    4470 > view matrix models
    4471 > #5,-0.10787,-0.94628,-0.30483,245.03,0.80101,0.09889,-0.59043,206.56,0.58886,-0.30787,0.74731,338.19>
    4472 > view matrix models
    4473 > #5,-0.27101,-0.95907,-0.082092,243.9,0.55729,-0.22587,0.79901,198.87,-0.78485,0.17079,0.59569,340.29>
    4474 > view matrix models
    4475 > #5,-0.72786,-0.54322,0.41849,240.44,0.34835,0.23275,0.90801,197.39,-0.59065,0.80668,0.019823,342.09>
    4476 > view matrix models
    4477 > #5,-0.41265,-0.34043,0.84488,236.68,0.80675,0.29409,0.51252,199.01,-0.42295,0.8931,0.15329,340.74>
    4478 > view matrix models
    4479 > #5,0.30768,-0.07732,0.94834,234.16,0.94345,0.15413,-0.29352,204.29,-0.12347,0.98502,0.12037,340.22>
    4480 > view matrix models
    4481 > #5,-0.3294,0.67309,0.66215,235.22,0.064826,0.71575,-0.69534,206.95,-0.94196,-0.18612,-0.2794,347.04>
    4482 > ui mousemode right "translate selected models"> view matrix models
    4483 > #5,-0.3294,0.67309,0.66215,274.07,0.064826,0.71575,-0.69534,330.47,-0.94196,-0.18612,-0.2794,373.87>
    4484 > ui mousemode right "rotate selected models"> view matrix models
    4485 > #5,0.10641,-0.80959,0.57726,277.53,-0.20523,0.55018,0.80944,321.69,-0.97291,-0.20461,-0.1076,372.87>
    4486 > ui mousemode right "translate selected models"> view matrix models
    4487 > #5,0.10641,-0.80959,0.57726,282.65,-0.20523,0.55018,0.80944,307.69,-0.97291,-0.20461,-0.1076,351.49>
    4488 > view matrix models
    4489 > #5,0.10641,-0.80959,0.57726,283.2,-0.20523,0.55018,0.80944,311.64,-0.97291,-0.20461,-0.1076,346.62>
    4490 > fitmap sel inMap #1Fit molecule AlphaFold Q9JIF7 (#5) to map postprocess.mrc
    4491 > (#1) using 7501 atoms 
    4492 average map value = 0.007661, steps = 76 
    4493 shifted from previous position = 4.15 
    4494 rotated from previous position = 8.09 degrees 
    4495 atoms outside contour = 4107, contour level = 0.0080828 
    4496  
    4497 Position of AlphaFold Q9JIF7 (#5) relative to postprocess.mrc (#1)
    4498 coordinates: 
    4499 Matrix rotation and translation 
    4500 0.04650098 -0.73947641 0.67157448 285.03045903 
    4501 -0.16587164 0.65725218 0.73519124 314.41918325 
    4502 -0.98505037 -0.14558228 -0.09209529 347.45631534 
    4503 Axis -0.44893096 0.84438300 0.29236680 
    4504 Axis point 361.10500418 0.00000000 -71.56871887 
    4505 Rotation angle (degrees) 101.19630367 
    4506 Shift along axis 239.11590829 
    4507  
    4508 > select clear> volume #1 level 0.0067> volume #1 level 0.01196> rename #5
    4509 > "bcop Q9JIF7"> ui tool show AlphaFoldFetching compressed Q7TNQ1 UniProt info
    4510 > from https://www.uniprot.org/uniprot/Q7TNQ1.xml 
    4511 > alphafold match Q7TNQ1Fetching compressed AlphaFold Q7TNQ1 from
    4512 > https://alphafold.ebi.ac.uk/files/AF-Q7TNQ1-F1-model_v4.cif 
    4513 1 AlphaFold model found using UniProt identifier: Q7TNQ1 (UniProt Q7TNQ1) 
    4514 | Sequence Similarity 
    4515 --- 
    4516 AlphaFold Model| Query Sequence| Identity %| Coverage % 
    4517 Q7TNQ1 | Q7TNQ1 | 100.0 | 100.0   
    4518 Opened 1 AlphaFold model 
    4519 > select add #8942 atoms, 957 bonds, 121 residues, 1 model selected 
    4520 > view matrix models #8,1,0,0,149.9,0,1,0,6.7504,0,0,1,-12.091> view matrix
    4521 > models #8,1,0,0,287.33,0,1,0,321.66,0,0,1,265.43> view matrix models
    4522 > #8,1,0,0,264.24,0,1,0,366.5,0,0,1,283.32> view matrix models
    4523 > #8,1,0,0,229.5,0,1,0,386.19,0,0,1,269.64> view matrix models
    4524 > #8,1,0,0,303.82,0,1,0,441.41,0,0,1,243.2> close #8Fetching compressed Q5XJY5
    4525 > UniProt info from https://www.uniprot.org/uniprot/Q5XJY5.xml 
    4526 > alphafold match Q5XJY5Fetching compressed AlphaFold Q5XJY5 from
    4527 > https://alphafold.ebi.ac.uk/files/AF-Q5XJY5-F1-model_v4.cif 
    4528 1 AlphaFold model found using UniProt identifier: Q5XJY5 (UniProt Q5XJY5) 
    4529 | Sequence Similarity 
    4530 --- 
    4531 AlphaFold Model| Query Sequence| Identity %| Coverage % 
    4532 Q5XJY5 | Q5XJY5 | 100.0 | 100.0   
    4533 Opened 1 AlphaFold model 
    4534 > select add #84014 atoms, 4083 bonds, 511 residues, 1 model selected 
    4535 > view matrix models #8,1,0,0,194.37,0,1,0,278.17,0,0,1,-165.99> view matrix
    4536 > models #8,1,0,0,330.77,0,1,0,303.4,0,0,1,317.75> view matrix models
    4537 > #8,1,0,0,289.13,0,1,0,381.85,0,0,1,374.49> view matrix models
    4538 > #8,1,0,0,226.68,0,1,0,354.27,0,0,1,374.38> view matrix models
    4539 > #8,1,0,0,182.68,0,1,0,331.4,0,0,1,377.96> view matrix models
    4540 > #8,1,0,0,250.96,0,1,0,357.53,0,0,1,329.55> hide #7 models> hide #6 models>
    4541 > hide #5 models> hide #4 models> hide #3 models> view matrix models
    4542 > #8,1,0,0,251.35,0,1,0,322.13,0,0,1,332.41> view matrix models
    4543 > #8,1,0,0,237.89,0,1,0,289.39,0,0,1,319.92> ui mousemode right "rotate
    4544 > selected models"> view matrix models
    4545 > #8,0.12745,0.73772,-0.66296,217.8,0.41884,0.56586,0.7102,307.24,0.89907,-0.36819,-0.23686,300.45>
    4546 > view matrix models
    4547 > #8,-0.16135,0.94424,0.287,235.04,-0.14136,-0.30993,0.94019,311.58,0.97672,0.11112,0.18349,308>
    4548 > view matrix models
    4549 > #8,0.54827,0.71745,0.42972,242.23,-0.64377,0.034086,0.76446,304.44,0.53381,-0.69577,0.48056,314.11>
    4550 > view matrix models
    4551 > #8,0.43688,0.68885,0.57847,244.77,-0.85392,0.11543,0.50745,297.9,0.28278,-0.71566,0.63865,316.1>
    4552 > view matrix models
    4553 > #8,0.23358,0.7626,0.60322,244.02,-0.94894,0.043513,0.31244,293.66,0.21202,-0.6454,0.73383,317.47>
    4554 > view matrix models
    4555 > #8,0.18456,0.89465,0.40686,239.39,-0.88428,-0.029508,0.46602,297.32,0.42893,-0.44579,0.78568,319.05>
    4556 > view matrix models
    4557 > #8,0.075697,0.89202,0.44562,239.63,-0.87716,-0.15296,0.45519,297.5,0.4742,-0.42533,0.77086,318.92>
    4558 > ui mousemode right "translate selected models"> view matrix models
    4559 > #8,0.075697,0.89202,0.44562,257.62,-0.87716,-0.15296,0.45519,309.44,0.4742,-0.42533,0.77086,334.32>
    4560 > view matrix models
    4561 > #8,0.075697,0.89202,0.44562,253.99,-0.87716,-0.15296,0.45519,305.59,0.4742,-0.42533,0.77086,332.93>
    4562 > ui mousemode right "rotate selected models"> view matrix models
    4563 > #8,0.10729,0.92588,0.36226,252.36,-0.91105,-0.054334,0.4087,304.18,0.39809,-0.37388,0.8377,333.75>
    4564 > ui mousemode right "translate selected models"> view matrix models
    4565 > #8,0.10729,0.92588,0.36226,254.59,-0.91105,-0.054334,0.4087,304.29,0.39809,-0.37388,0.8377,332.06>
    4566 > hide #!1 models> select clear> select #8/A:38 atoms, 7 bonds, 1 residue, 1
    4567 > model selected 
    4568 > select clear> select #8/A:38 atoms, 7 bonds, 1 residue, 1 model selected 
    4569 > select add #8/A:12813 atoms, 11 bonds, 2 residues, 1 model selected 
    4570 > select up117 atoms, 116 bonds, 16 residues, 1 model selected 
    4571 > select up4014 atoms, 4083 bonds, 511 residues, 1 model selected 
    4572 > select up31453 atoms, 32073 bonds, 3964 residues, 10 models selected 
    4573 > select up31453 atoms, 32073 bonds, 3964 residues, 10 models selected 
    4574 > select down4014 atoms, 4083 bonds, 511 residues, 1 model selected 
    4575 > select down117 atoms, 116 bonds, 16 residues, 1 model selected 
    4576 > select clear> select #8/A:48 atoms, 7 bonds, 1 residue, 1 model selected 
    4577 > select #8:1-1291037 atoms, 1053 bonds, 129 residues, 1 model selected 
    4578 > fitmap sel inMap #1Fit molecule AlphaFold Q5XJY5 (#8) to map postprocess.mrc
    4579 > (#1) using 1037 atoms 
    4580 average map value = 0.01008, steps = 68 
    4581 shifted from previous position = 1.88 
    4582 rotated from previous position = 9.03 degrees 
    4583 atoms outside contour = 617, contour level = 0.011955 
    4584  
    4585 Position of AlphaFold Q5XJY5 (#8) relative to postprocess.mrc (#1)
    4586 coordinates: 
    4587 Matrix rotation and translation 
    4588 0.20025661 0.94967606 0.24085819 253.94050178 
    4589 -0.87761546 0.06459277 0.47499355 301.50451746 
    4590 0.43553230 -0.30650147 0.84638553 331.26549457 
    4591 Axis -0.39135326 -0.09748796 -0.91506214 
    4592 Axis point 205.98623285 84.05170203 0.00000000 
    4593 Rotation angle (degrees) 86.81170934 
    4594 Shift along axis -431.90201573 
    4595  
    4596 > show #!1 models> select clear> show #7 models> show #6 models> show #5
    4597 > models> show #4 models> show #3 modelsFetching compressed Q9QXK3 UniProt
    4598 > info from https://www.uniprot.org/uniprot/Q9QXK3.xml 
    4599 > alphafold match Q9QXK3Fetching compressed AlphaFold Q9QXK3 from
    4600 > https://alphafold.ebi.ac.uk/files/AF-Q9QXK3-F1-model_v4.cif 
    4601 1 AlphaFold model found using UniProt identifier: Q9QXK3 (UniProt Q9QXK3) 
    4602 | Sequence Similarity 
    4603 --- 
    4604 AlphaFold Model| Query Sequence| Identity %| Coverage % 
    4605 Q9QXK3 | Q9QXK3 | 100.0 | 100.0   
    4606 Opened 1 AlphaFold model 
    4607 > select add #96840 atoms, 6965 bonds, 871 residues, 1 model selected 
    4608 > view matrix models #9,1,0,0,85.449,0,1,0,271.26,0,0,1,-4.2898> view matrix
    4609 > models #9,1,0,0,363.93,0,1,0,413.14,0,0,1,278.06> view matrix models
    4610 > #9,1,0,0,279.54,0,1,0,339.8,0,0,1,433.41> view matrix models
    4611 > #9,1,0,0,244.3,0,1,0,387.71,0,0,1,324.69> view matrix models
    4612 > #9,1,0,0,266.45,0,1,0,316.24,0,0,1,284.51> view matrix models
    4613 > #9,1,0,0,300.16,0,1,0,316.61,0,0,1,341.57> view matrix models
    4614 > #9,1,0,0,292.4,0,1,0,403.59,0,0,1,378.62> ui mousemode right "rotate
    4615 > selected models"> view matrix models
    4616 > #9,0.99183,0.09982,0.079482,292.2,0.0093959,-0.67835,0.73468,422.34,0.12725,-0.72793,-0.67374,371.99>
    4617 > view matrix models
    4618 > #9,0.25596,-0.95097,-0.17363,299.29,-0.10833,-0.2067,0.97239,420.44,-0.9606,-0.23008,-0.15592,372.71>
    4619 > view matrix models
    4620 > #9,0.79745,0.12821,-0.58961,287.21,0.57389,0.14065,0.80676,415.91,0.18636,-0.98172,0.038581,379.2>
    4621 > view matrix models
    4622 > #9,0.75567,-0.21736,-0.61783,289.78,0.23302,-0.79238,0.56377,421.81,-0.6121,-0.56999,-0.54813,372.25>
    4623 > view matrix models
    4624 > #9,0.11583,0.2738,-0.95479,283.91,0.71343,-0.69175,-0.11183,415.66,-0.69109,-0.66822,-0.27546,375.1>
    4625 > view matrix models
    4626 > #9,-0.072123,0.35632,-0.93158,283.57,0.73527,-0.6121,-0.29105,413.69,-0.67393,-0.70595,-0.21784,375.81>
    4627 > view matrix models
    4628 > #9,-0.10636,0.34632,-0.93207,283.67,0.68464,-0.65428,-0.32123,413.84,-0.72108,-0.67229,-0.16751,375.95>
    4629 > ui mousemode right "rotate selected models"> ui mousemode right "translate
    4630 > selected models"> view matrix models
    4631 > #9,-0.10636,0.34632,-0.93207,327.8,0.68464,-0.65428,-0.32123,352.03,-0.72108,-0.67229,-0.16751,391.1>
    4632 > view matrix models
    4633 > #9,-0.10636,0.34632,-0.93207,325.86,0.68464,-0.65428,-0.32123,339.75,-0.72108,-0.67229,-0.16751,369.72>
    4634 > view matrix models
    4635 > #9,-0.10636,0.34632,-0.93207,324.89,0.68464,-0.65428,-0.32123,334.42,-0.72108,-0.67229,-0.16751,360.64>
    4636 > fitmap sel inMap #1Fit molecule AlphaFold Q9QXK3 (#9) to map postprocess.mrc
    4637 > (#1) using 6840 atoms 
    4638 average map value = 0.006072, steps = 140 
    4639 shifted from previous position = 19.4 
    4640 rotated from previous position = 26.9 degrees 
    4641 atoms outside contour = 5783, contour level = 0.011955 
    4642  
    4643 Position of AlphaFold Q9QXK3 (#9) relative to postprocess.mrc (#1)
    4644 coordinates: 
    4645 Matrix rotation and translation 
    4646 0.29421585 0.14209339 -0.94511719 316.26408008 
    4647 0.72293810 -0.67990666 0.12283091 351.53253187 
    4648 -0.62513801 -0.71940003 -0.30276405 352.91229436 
    4649 Axis -0.78568500 -0.29849632 0.54184779 
    4650 Axis point 0.00000000 197.21498840 229.44931408 
    4651 Rotation angle (degrees) 147.58925529 
    4652 Shift along axis -162.19036505 
    4653  
    4654 > view matrix models
    4655 > #9,0.29422,0.14209,-0.94512,323.31,0.72294,-0.67991,0.12283,355.25,-0.62514,-0.7194,-0.30276,351.21>
    4656 > fitmap sel inMap #1Fit molecule AlphaFold Q9QXK3 (#9) to map postprocess.mrc
    4657 > (#1) using 6840 atoms 
    4658 average map value = 0.006265, steps = 92 
    4659 shifted from previous position = 6.63 
    4660 rotated from previous position = 16.6 degrees 
    4661 atoms outside contour = 5675, contour level = 0.011955 
    4662  
    4663 Position of AlphaFold Q9QXK3 (#9) relative to postprocess.mrc (#1)
    4664 coordinates: 
    4665 Matrix rotation and translation 
    4666 0.51174673 -0.00550976 -0.85911869 319.63636780 
    4667 0.66090437 -0.63639088 0.39775879 360.97301425 
    4668 -0.54892686 -0.77134706 -0.32202953 352.42782780 
    4669 Axis -0.84657041 -0.22461544 0.48256237 
    4670 Axis point 0.00000000 242.22195078 191.54417221 
    4671 Rotation angle (degrees) 136.33066765 
    4672 Shift along axis -181.60639881 
    4673  
    4674 > select clear> hide #3 models> hide #4 models> hide #5 models> hide #6
    4675 > models> hide #7 models> hide #8 models> hide #!1 models> show #!1 models>
    4676 > hide #!1 modelsDrag select of 1 residues 
    4677 > select clearDrag select of 211 residues 
    4678 > show #8 models> hide #8 models> show #7 models> show #6 models> show #5
    4679 > models> show #4 models> hide #4 models> hide #6 models> hide #7 models> hide
    4680 > #5 models> show #!1 models> ui tool show "Fit in Map"> fitmap sel inMap #1
    4681 > moveWholeMolecules falseFit molecule AlphaFold Q9QXK3 (#9) to map
    4682 > postprocess.mrc (#1) using 1678 atoms 
    4683 average map value = 0.009038, steps = 56 
    4684 shifted from previous position = 1.03 
    4685 rotated from previous position = 11.8 degrees 
    4686 atoms outside contour = 1111, contour level = 0.011955 
    4687  
    4688 > view matrix models
    4689 > #9,0.51175,-0.0055098,-0.85912,326.87,0.6609,-0.63639,0.39776,356.29,-0.54893,-0.77135,-0.32203,353.26>
    4690 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QXK3
    4691 > (#9) to map postprocess.mrc (#1) using 1678 atoms 
    4692 average map value = 0.01147, steps = 56 
    4693 shifted from previous position = 4.35 
    4694 rotated from previous position = 11.3 degrees 
    4695 atoms outside contour = 900, contour level = 0.011955 
    4696  
    4697 > hide #!1 models> select #9/A:2068 atoms, 7 bonds, 1 residue, 1 model
    4698 > selected 
    4699 > select #9:206-316868 atoms, 883 bonds, 111 residues, 1 model selected 
    4700 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QXK3
    4701 > (#9) to map postprocess.mrc (#1) using 868 atoms 
    4702 average map value = 0.01128, steps = 68 
    4703 shifted from previous position = 7.48 
    4704 rotated from previous position = 28.9 degrees 
    4705 atoms outside contour = 497, contour level = 0.011955 
    4706  
    4707 > show #!1 models> hide #!1 models> select #9:300-5001551 atoms, 1575 bonds,
    4708 > 201 residues, 1 model selected 
    4709 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QXK3
    4710 > (#9) to map postprocess.mrc (#1) using 1551 atoms 
    4711 average map value = 0.0102, steps = 100 
    4712 shifted from previous position = 11.7 
    4713 rotated from previous position = 27.1 degrees 
    4714 atoms outside contour = 951, contour level = 0.011955 
    4715  
    4716 > show #!1 models> select #9:300-9004474 atoms, 4559 bonds, 572 residues, 1
    4717 > model selected 
    4718 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QXK3
    4719 > (#9) to map postprocess.mrc (#1) using 4474 atoms 
    4720 average map value = 0.007096, steps = 144 
    4721 shifted from previous position = 10.5 
    4722 rotated from previous position = 25.4 degrees 
    4723 atoms outside contour = 3695, contour level = 0.011955 
    4724  
    4725 > select #9:300-7003151 atoms, 3212 bonds, 401 residues, 1 model selected 
    4726 > select #9:300-6002347 atoms, 2387 bonds, 301 residues, 1 model selected 
    4727 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QXK3
    4728 > (#9) to map postprocess.mrc (#1) using 2347 atoms 
    4729 average map value = 0.007995, steps = 64 
    4730 shifted from previous position = 1.03 
    4731 rotated from previous position = 5.58 degrees 
    4732 atoms outside contour = 1793, contour level = 0.011955 
    4733  
    4734 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QXK3
    4735 > (#9) to map postprocess.mrc (#1) using 2347 atoms 
    4736 average map value = 0.007994, steps = 36 
    4737 shifted from previous position = 0.0389 
    4738 rotated from previous position = 0.0318 degrees 
    4739 atoms outside contour = 1790, contour level = 0.011955 
    4740  
    4741 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QXK3
    4742 > (#9) to map postprocess.mrc (#1) using 2347 atoms 
    4743 average map value = 0.007994, steps = 44 
    4744 shifted from previous position = 0.00739 
    4745 rotated from previous position = 0.0307 degrees 
    4746 atoms outside contour = 1789, contour level = 0.011955 
    4747  
    4748 > select #9:500-600801 atoms, 816 bonds, 101 residues, 1 model selected 
    4749 > select #9:350-6001971 atoms, 2007 bonds, 251 residues, 1 model selected 
    4750 > select #9:350-5001175 atoms, 1195 bonds, 151 residues, 1 model selected 
    4751 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QXK3
    4752 > (#9) to map postprocess.mrc (#1) using 1175 atoms 
    4753 average map value = 0.01025, steps = 60 
    4754 shifted from previous position = 3.3 
    4755 rotated from previous position = 26.6 degrees 
    4756 atoms outside contour = 741, contour level = 0.011955 
    4757  
    4758 > select #9:400-5501192 atoms, 1211 bonds, 151 residues, 1 model selected 
    4759 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QXK3
    4760 > (#9) to map postprocess.mrc (#1) using 1192 atoms 
    4761 average map value = 0.0094, steps = 68 
    4762 shifted from previous position = 1.14 
    4763 rotated from previous position = 3.49 degrees 
    4764 atoms outside contour = 837, contour level = 0.011955 
    4765  
    4766 > select #9:400-100Nothing selected 
    4767 > select #9:400-10003708 atoms, 3783 bonds, 472 residues, 1 model selected 
    4768 > view matrix models
    4769 > #9,0.51175,-0.0055098,-0.85912,308.44,0.6609,-0.63639,0.39776,348.7,-0.54893,-0.77135,-0.32203,360.28>
    4770 > view matrix models
    4771 > #9,0.51175,-0.0055098,-0.85912,297.82,0.6609,-0.63639,0.39776,381.54,-0.54893,-0.77135,-0.32203,377.2>
    4772 > ui tool show AlphaFold> close #9Fetching compressed Q9Qxk3 UniProt info from
    4773 > https://www.uniprot.org/uniprot/Q9Qxk3.xml 
    4774 > alphafold match Q9Qxk31 AlphaFold model found using UniProt identifier:
    4775 > Q9Qxk3 (UniProt Q9Qxk3) 
    4776 | Sequence Similarity 
    4777 --- 
    4778 AlphaFold Model| Query Sequence| Identity %| Coverage % 
    4779 Q9Qxk3 | Q9Qxk3 | 100.0 | 100.0   
    4780 Opened 1 AlphaFold model 
    4781 > select add #96840 atoms, 6965 bonds, 871 residues, 1 model selected 
    4782 > view matrix models #9,1,0,0,466.25,0,1,0,157.83,0,0,1,256.46> view matrix
    4783 > models #9,1,0,0,305.98,0,1,0,365.44,0,0,1,305.5> view matrix models
    4784 > #9,1,0,0,341.52,0,1,0,373.45,0,0,1,300.44> ui mousemode right "rotate
    4785 > selected models"> view matrix models
    4786 > #9,0.81361,-0.12237,-0.56838,338.46,0.5568,-0.1174,0.82231,387.95,-0.16736,-0.98552,-0.027381,300.86>
    4787 > view matrix models
    4788 > #9,0.82945,-0.12912,-0.54345,338.68,0.5312,-0.11855,0.83891,388.1,-0.17275,-0.98452,-0.029744,300.84>
    4789 > view matrix models
    4790 > #9,0.54585,0.14577,-0.82511,334.65,0.61472,-0.73883,0.27614,388.82,-0.56936,-0.65794,-0.49289,295.15>
    4791 > view matrix models
    4792 > #9,0.38754,0.030891,-0.92133,334.98,0.55325,-0.80723,0.20565,388.9,-0.73738,-0.58943,-0.32992,295.94>
    4793 > ui mousemode right "translate selected models"> view matrix models
    4794 > #9,0.38754,0.030891,-0.92133,322.24,0.55325,-0.80723,0.20565,374.45,-0.73738,-0.58943,-0.32992,358.47>
    4795 > view matrix models
    4796 > #9,0.38754,0.030891,-0.92133,327.16,0.55325,-0.80723,0.20565,360.18,-0.73738,-0.58943,-0.32992,352.33>
    4797 > view matrix models
    4798 > #9,0.38754,0.030891,-0.92133,324.22,0.55325,-0.80723,0.20565,360.68,-0.73738,-0.58943,-0.32992,358.31>
    4799 > view matrix models
    4800 > #9,0.38754,0.030891,-0.92133,322.41,0.55325,-0.80723,0.20565,353.33,-0.73738,-0.58943,-0.32992,357.52>
    4801 > ui mousemode right "translate selected models"> ui mousemode right "rotate
    4802 > selected models"> view matrix models
    4803 > #9,0.34389,-0.062917,-0.9369,323.07,0.6427,-0.71165,0.2837,353.07,-0.6846,-0.69971,-0.2043,359.27>
    4804 > ui mousemode right "translate selected models"> view matrix models
    4805 > #9,0.34389,-0.062917,-0.9369,328.81,0.6427,-0.71165,0.2837,356.31,-0.6846,-0.69971,-0.2043,360.58>
    4806 > view matrix models
    4807 > #9,0.34389,-0.062917,-0.9369,328.8,0.6427,-0.71165,0.2837,351.24,-0.6846,-0.69971,-0.2043,359.5>
    4808 > view matrix models
    4809 > #9,0.34389,-0.062917,-0.9369,331.26,0.6427,-0.71165,0.2837,360.08,-0.6846,-0.69971,-0.2043,354.24>
    4810 > select up38293 atoms, 39038 bonds, 4835 residues, 11 models selected 
    4811 > select down6840 atoms, 6965 bonds, 871 residues, 1 model selected 
    4812 > fitmap sel inMap #1Fit molecule AlphaFold Q9Qxk3 (#9) to map postprocess.mrc
    4813 > (#1) using 6840 atoms 
    4814 average map value = 0.006977, steps = 140 
    4815 shifted from previous position = 5.07 
    4816 rotated from previous position = 17 degrees 
    4817 atoms outside contour = 5336, contour level = 0.011955 
    4818  
    4819 Position of AlphaFold Q9Qxk3 (#9) relative to postprocess.mrc (#1)
    4820 coordinates: 
    4821 Matrix rotation and translation 
    4822 0.55353562 -0.14351463 -0.82036691 327.32551199 
    4823 0.43570473 -0.78957990 0.43211684 362.60212095 
    4824 -0.70976031 -0.59662980 -0.37453060 353.73929912 
    4825 Axis -0.86757749 -0.09327835 0.48847564 
    4826 Axis point 0.00000000 244.06438349 202.94719963 
    4827 Rotation angle (degrees) 143.63802429 
    4828 Shift along axis -145.01014236 
    4829  
    4830 > hide #9 models> show #9 models> hide #9 models> show #9 models> hide #!1
    4831 > models> select #9:250-10004861 atoms, 4956 bonds, 622 residues, 1 model
    4832 > selected 
    4833 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9Qxk3
    4834 > (#9) to map postprocess.mrc (#1) using 4861 atoms 
    4835 average map value = 0.006192, steps = 108 
    4836 shifted from previous position = 9.94 
    4837 rotated from previous position = 28.1 degrees 
    4838 atoms outside contour = 4157, contour level = 0.011955 
    4839  
    4840 > show #!1 models> select #9:300-6002347 atoms, 2387 bonds, 301 residues, 1
    4841 > model selected 
    4842 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9Qxk3
    4843 > (#9) to map postprocess.mrc (#1) using 2347 atoms 
    4844 average map value = 0.0079, steps = 100 
    4845 shifted from previous position = 6.85 
    4846 rotated from previous position = 13.6 degrees 
    4847 atoms outside contour = 1821, contour level = 0.011955 
    4848  
    4849 > select #9:100-3001571 atoms, 1595 bonds, 201 residues, 1 model selected 
    4850 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9Qxk3
    4851 > (#9) to map postprocess.mrc (#1) using 1571 atoms 
    4852 average map value = 0.0114, steps = 104 
    4853 shifted from previous position = 1.54 
    4854 rotated from previous position = 6.83 degrees 
    4855 atoms outside contour = 841, contour level = 0.011955 
    4856  
    4857 > select #9:300-400777 atoms, 787 bonds, 101 residues, 1 model selected 
    4858 > select #9:250-4001164 atoms, 1184 bonds, 151 residues, 1 model selected 
    4859 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9Qxk3
    4860 > (#9) to map postprocess.mrc (#1) using 1164 atoms 
    4861 average map value = 0.01073, steps = 72 
    4862 shifted from previous position = 3.06 
    4863 rotated from previous position = 30.4 degrees 
    4864 atoms outside contour = 648, contour level = 0.011955 
    4865  
    4866 > select #9:400-100Nothing selected 
    4867 > select #9:400-10003708 atoms, 3783 bonds, 472 residues, 1 model selected 
    4868 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9Qxk3
    4869 > (#9) to map postprocess.mrc (#1) using 3708 atoms 
    4870 average map value = 0.006659, steps = 104 
    4871 shifted from previous position = 11.1 
    4872 rotated from previous position = 11.8 degrees 
    4873 atoms outside contour = 3193, contour level = 0.011955 
    4874  
    4875 > undo> select #9:400-10003708 atoms, 3783 bonds, 472 residues, 1 model
    4876 > selected 
    4877 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9Qxk3
    4878 > (#9) to map postprocess.mrc (#1) using 3708 atoms 
    4879 average map value = 0.006659, steps = 44 
    4880 shifted from previous position = 0.0502 
    4881 rotated from previous position = 0.0896 degrees 
    4882 atoms outside contour = 3187, contour level = 0.011955 
    4883  
    4884 > hide #9 models> close #9> ui tool show AlphaFold> alphafold match Q9QXK31
    4885 > AlphaFold model found using UniProt identifier: Q9QXK3 (UniProt Q9QXK3) 
    4886 | Sequence Similarity 
    4887 --- 
    4888 AlphaFold Model| Query Sequence| Identity %| Coverage % 
    4889 Q9QXK3 | Q9QXK3 | 100.0 | 100.0   
    4890 Opened 1 AlphaFold model 
    4891 > select add #96840 atoms, 6965 bonds, 871 residues, 1 model selected 
    4892 > view matrix models #9,1,0,0,346.28,0,1,0,94.03,0,0,1,328.47> view matrix
    4893 > models #9,1,0,0,344.81,0,1,0,325.02,0,0,1,180.28> view matrix models
    4894 > #9,1,0,0,329.7,0,1,0,280.23,0,0,1,355.77> view matrix models
    4895 > #9,1,0,0,329.94,0,1,0,338.64,0,0,1,391.21> view matrix models
    4896 > #9,1,0,0,333.12,0,1,0,343.71,0,0,1,382.63> ui mousemode right "rotate
    4897 > selected models"> view matrix models
    4898 > #9,0.98522,-0.020408,-0.17006,332.04,0.023622,-0.9672,0.25292,361.21,-0.16964,-0.2532,-0.95242,370.41>
    4899 > view matrix models
    4900 > #9,-0.16807,0.28223,-0.94451,324.86,0.431,-0.84067,-0.3279,355.6,-0.88656,-0.46219,0.019648,379.81>
    4901 > view matrix models
    4902 > #9,0.037112,0.71778,-0.69528,323.07,0.99928,-0.020977,0.031682,351.27,0.0081554,-0.69595,-0.71804,375.52>
    4903 > view matrix models
    4904 > #9,0.10857,0.6296,-0.76929,323.17,0.70385,-0.59517,-0.38777,352.99,-0.702,-0.49937,-0.50777,376.07>
    4905 > view matrix models
    4906 > #9,-0.10772,0.32765,-0.93864,324.49,0.68538,-0.65945,-0.30885,354.09,-0.72017,-0.67659,-0.15353,380.1>
    4907 > ui mousemode right "translate selected models"> view matrix models
    4908 > #9,-0.10772,0.32765,-0.93864,323.58,0.68538,-0.65945,-0.30885,357.08,-0.72017,-0.67659,-0.15353,353.13>
    4909 > view matrix models
    4910 > #9,-0.10772,0.32765,-0.93864,326.75,0.68538,-0.65945,-0.30885,348.33,-0.72017,-0.67659,-0.15353,353.08>
    4911 > ui mousemode right "rotate selected models"> view matrix models
    4912 > #9,0.46602,0.20275,-0.86123,327.86,0.56213,-0.81953,0.11124,352.79,-0.68325,-0.53597,-0.49589,349.41>
    4913 > view matrix models
    4914 > #9,0.54278,0.21877,-0.81088,328.04,0.69587,-0.65774,0.28835,352.7,-0.47027,-0.72078,-0.50924,350.61>
    4915 > view matrix models
    4916 > #9,0.45333,0.068879,-0.88868,328.73,0.65945,-0.69669,0.2824,353,-0.59968,-0.71406,-0.36126,351.75>
    4917 > view matrix models
    4918 > #9,0.40612,-0.099249,-0.90841,329.96,0.5666,-0.75258,0.33553,353.91,-0.71696,-0.65098,-0.2494,352.16>
    4919 > ui mousemode right "translate selected models"> view matrix models
    4920 > #9,0.40612,-0.099249,-0.90841,326.9,0.5666,-0.75258,0.33553,358.95,-0.71696,-0.65098,-0.2494,354.62>
    4921 > view matrix models
    4922 > #9,0.40612,-0.099249,-0.90841,327.34,0.5666,-0.75258,0.33553,355.75,-0.71696,-0.65098,-0.2494,353.62>
    4923 > ui mousemode right "rotate selected models"> view matrix models
    4924 > #9,0.45446,-0.074433,-0.88765,327.25,0.47841,-0.82019,0.31371,356.19,-0.75139,-0.56723,-0.33713,352.33>
    4925 > view matrix models
    4926 > #9,0.53338,-0.018393,-0.84568,327.05,0.3716,-0.89303,0.2538,356.42,-0.75988,-0.44962,-0.46949,350.43>
    4927 > ui mousemode right "translate selected models"> view matrix models
    4928 > #9,0.53338,-0.018393,-0.84568,321.88,0.3716,-0.89303,0.2538,362.63,-0.75988,-0.44962,-0.46949,353.85>
    4929 > view matrix models
    4930 > #9,0.53338,-0.018393,-0.84568,322.39,0.3716,-0.89303,0.2538,362.93,-0.75988,-0.44962,-0.46949,356.17>
    4931 > ui mousemode right "rotate selected models"> view matrix models
    4932 > #9,0.32662,-0.16027,-0.93147,323.06,0.4011,-0.86887,0.29015,362.98,-0.85583,-0.46838,-0.21951,358.24>
    4933 > view matrix models
    4934 > #9,0.3621,-0.28466,-0.88761,324.34,0.37433,-0.82767,0.41814,363.62,-0.85367,-0.48367,-0.19315,358.55>
    4935 > ui mousemode right "translate selected models"> view matrix models
    4936 > #9,0.3621,-0.28466,-0.88761,332.14,0.37433,-0.82767,0.41814,362.08,-0.85367,-0.48367,-0.19315,356.53>
    4937 > select up38293 atoms, 39038 bonds, 4835 residues, 11 models selected 
    4938 > select down6840 atoms, 6965 bonds, 871 residues, 1 model selected 
    4939 > fitmap sel inMap #1Fit molecule AlphaFold Q9QXK3 (#9) to map postprocess.mrc
    4940 > (#1) using 6840 atoms 
    4941 average map value = 0.006977, steps = 116 
    4942 shifted from previous position = 5.47 
    4943 rotated from previous position = 14.8 degrees 
    4944 atoms outside contour = 5340, contour level = 0.011955 
    4945  
    4946 Position of AlphaFold Q9QXK3 (#9) relative to postprocess.mrc (#1)
    4947 coordinates: 
    4948 Matrix rotation and translation 
    4949 0.55315490 -0.14333117 -0.82065574 327.34325267 
    4950 0.43605923 -0.78954698 0.43181930 362.59618814 
    4951 -0.70983943 -0.59671747 -0.37424090 353.73516973 
    4952 Axis -0.86745823 -0.09346143 0.48865241 
    4953 Axis point 0.00000000 244.03028062 202.99835241 
    4954 Rotation angle (degrees) 143.64083195 
    4955 Shift along axis -144.99181648 
    4956  
    4957 > select #9:200-10005268 atoms, 5369 bonds, 672 residues, 1 model selected 
    4958 > fitmap sel inMap #1Fit molecule AlphaFold Q9QXK3 (#9) to map postprocess.mrc
    4959 > (#1) using 5268 atoms 
    4960 average map value = 0.006427, steps = 464 
    4961 shifted from previous position = 15.5 
    4962 rotated from previous position = 56.2 degrees 
    4963 atoms outside contour = 4358, contour level = 0.011955 
    4964  
    4965 Position of AlphaFold Q9QXK3 (#9) relative to postprocess.mrc (#1)
    4966 coordinates: 
    4967 Matrix rotation and translation 
    4968 0.49099498 -0.67801596 -0.54700849 326.47928845 
    4969 0.70423224 -0.06071019 0.70736923 354.78229623 
    4970 -0.51281661 -0.73253576 0.44767230 343.95295021 
    4971 Axis -0.72129666 -0.01712786 0.69241444 
    4972 Axis point 0.00000000 399.34894164 97.36011707 
    4973 Rotation angle (degrees) 93.49844516 
    4974 Shift along axis -3.40709031 
    4975  
    4976 > view matrix models
    4977 > #9,0.49099,-0.67802,-0.54701,329.21,0.70423,-0.06071,0.70737,351.41,-0.51282,-0.73254,0.44767,347.28>
    4978 > ui mousemode right "rotate selected models"> view matrix models
    4979 > #9,0.3712,-0.76337,-0.52866,330.12,0.89353,0.13876,0.42702,347.61,-0.25262,-0.63088,0.7336,348.37>
    4980 > view matrix models
    4981 > #9,0.26797,-0.16146,-0.9498,322.32,0.79568,-0.51877,0.31268,352.08,-0.54321,-0.83953,-0.010544,344.79>
    4982 > volume #1 level 0.0114> view matrix models
    4983 > #9,-0.068946,0.012243,-0.99755,320.86,0.95859,-0.27615,-0.069642,347.2,-0.27633,-0.96104,0.0073039,345.67>
    4984 > ui mousemode right "translate selected models"> view matrix models
    4985 > #9,-0.068946,0.012243,-0.99755,326.16,0.95859,-0.27615,-0.069642,383.95,-0.27633,-0.96104,0.0073039,364.3>
    4986 > ui mousemode right "rotate selected models"> view matrix models
    4987 > #9,0.29948,-0.17563,-0.9378,327.8,0.51056,-0.80084,0.31302,391.3,-0.806,-0.57255,-0.15017,360.48>
    4988 > ui mousemode right "translate selected models"> view matrix models
    4989 > #9,0.29948,-0.17563,-0.9378,331.34,0.51056,-0.80084,0.31302,373.09,-0.806,-0.57255,-0.15017,354.38>
    4990 > view matrix models
    4991 > #9,0.29948,-0.17563,-0.9378,331.12,0.51056,-0.80084,0.31302,368.68,-0.806,-0.57255,-0.15017,356.95>
    4992 > view matrix models
    4993 > #9,0.29948,-0.17563,-0.9378,331.87,0.51056,-0.80084,0.31302,368.76,-0.806,-0.57255,-0.15017,357.32>
    4994 > ui mousemode right "rotate selected models"> view matrix models
    4995 > #9,0.2389,-0.24832,-0.93875,332.49,0.49289,-0.80194,0.33757,368.96,-0.83665,-0.54335,-0.069191,357.71>
    4996 > ui mousemode right "translate selected models"> view matrix models
    4997 > #9,0.2389,-0.24832,-0.93875,331.35,0.49289,-0.80194,0.33757,368.84,-0.83665,-0.54335,-0.069191,354.45>
    4998 > ui mousemode right "rotate selected models"> view matrix models
    4999 > #9,0.25047,-0.32627,-0.91149,332.16,0.48051,-0.77545,0.40962,369.17,-0.84046,-0.54058,-0.037448,354.66>
    5000 > view matrix models
    5001 > #9,0.25692,-0.30288,-0.91775,331.92,0.48343,-0.782,0.39341,369.1,-0.83683,-0.54474,-0.054491,354.57>
    5002 > ui mousemode right "translate selected models"> view matrix models
    5003 > #9,0.25692,-0.30288,-0.91775,330.94,0.48343,-0.782,0.39341,368.9,-0.83683,-0.54474,-0.054491,354.54>
    5004 > view matrix models
    5005 > #9,0.25692,-0.30288,-0.91775,331.19,0.48343,-0.782,0.39341,367.85,-0.83683,-0.54474,-0.054491,351.42>
    5006 > view matrix models
    5007 > #9,0.25692,-0.30288,-0.91775,331.96,0.48343,-0.782,0.39341,365.6,-0.83683,-0.54474,-0.054491,354.12>
    5008 > view matrix models
    5009 > #9,0.25692,-0.30288,-0.91775,332.51,0.48343,-0.782,0.39341,364.42,-0.83683,-0.54474,-0.054491,353.64>
    5010 > view matrix models
    5011 > #9,0.25692,-0.30288,-0.91775,332.06,0.48343,-0.782,0.39341,365.52,-0.83683,-0.54474,-0.054491,351.69>
    5012 > view matrix models
    5013 > #9,0.25692,-0.30288,-0.91775,332.08,0.48343,-0.782,0.39341,365.35,-0.83683,-0.54474,-0.054491,350.74>
    5014 > view matrix models
    5015 > #9,0.25692,-0.30288,-0.91775,331.78,0.48343,-0.782,0.39341,364.85,-0.83683,-0.54474,-0.054491,350.82>
    5016 > show #8 models> hide #8 models> show #7 models> hide #7 models> show #6
    5017 > models> hide #6 models> show #5 models> hide #5 models> show #5 models> hide
    5018 > #9 models> volume #1 level 0.007806> hide #5 models> show #9 models> show #5
    5019 > models> volume #1 level 0.004348> volume #1 level 0.008913> hide #5 models>
    5020 > hide #!1 models> select clear> select #9:1-3542777 atoms, 2820 bonds, 354
    5021 > residues, 1 model selected 
    5022 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QXK3
    5023 > (#9) to map postprocess.mrc (#1) using 2777 atoms 
    5024 average map value = 0.01112, steps = 108 
    5025 shifted from previous position = 10.6 
    5026 rotated from previous position = 20.7 degrees 
    5027 atoms outside contour = 1204, contour level = 0.0089126 
    5028  
    5029 > show #!1 models> show #3 models> hide #3 models> show #4 models> hide #4
    5030 > models> show #5 models> select clear> show #8 models> show #7 models> show
    5031 > #6 models> show #3 models> show #!2 models> show #4 models> hide #!2 models>
    5032 > ui tool show AlphaFoldFetching compressed P61924 UniProt info from
    5033 > https://www.uniprot.org/uniprot/P61924.xml 
    5034 > alphafold match P61924Fetching compressed AlphaFold P61924 from
    5035 > https://alphafold.ebi.ac.uk/files/AF-P61924-F1-model_v4.cif 
    5036 1 AlphaFold model found using UniProt identifier: P61924 (UniProt P61924) 
    5037 | Sequence Similarity 
    5038 --- 
    5039 AlphaFold Model| Query Sequence| Identity %| Coverage % 
    5040 P61924 | P61924 | 100.0 | 100.0   
    5041 Opened 1 AlphaFold model 
    5042 > select add #101420 atoms, 1441 bonds, 177 residues, 1 model selected 
    5043 > view matrix models #10,1,0,0,-76.273,0,1,0,57.541,0,0,1,547.9> view matrix
    5044 > models #10,1,0,0,345.73,0,1,0,306.47,0,0,1,357.61> view matrix models
    5045 > #10,1,0,0,297.5,0,1,0,315.44,0,0,1,368> view matrix models
    5046 > #10,1,0,0,303.89,0,1,0,298.59,0,0,1,364.43> view matrix models
    5047 > #10,1,0,0,312.28,0,1,0,288.62,0,0,1,366.79> view matrix models
    5048 > #10,1,0,0,342,0,1,0,324.37,0,0,1,361.18> view matrix models
    5049 > #10,1,0,0,349.14,0,1,0,327.22,0,0,1,345.56> volume #1 level 0.01209> hide #6
    5050 > models> hide #7 models> hide #8 models> hide #9 models> hide #10 models>
    5051 > hide #4 models> hide #5 models> hide #3 models> show #10 models> ui
    5052 > mousemode right "rotate selected models"> view matrix models
    5053 > #10,0.32391,0.15708,-0.93296,340.76,-0.6159,0.78355,-0.081909,322.55,0.71816,0.60114,0.35055,348.14>
    5054 > view matrix models
    5055 > #10,0.45089,0.75045,-0.48323,347.69,0.79024,-0.083917,0.60702,328.71,0.41499,-0.65557,-0.63088,333.11>
    5056 > view matrix models
    5057 > #10,0.2643,0.93034,-0.2542,349.33,0.95688,-0.28589,-0.051414,324.04,-0.1205,-0.22965,-0.96578,330.84>
    5058 > view matrix models
    5059 > #10,0.53133,0.79911,-0.28126,349.66,0.83163,-0.55529,-0.0066568,322.2,-0.1615,-0.23036,-0.95961,330.68>
    5060 > view matrix models
    5061 > #10,0.44282,0.88902,0.11645,352.36,0.83457,-0.45615,0.30888,324.84,0.32772,-0.039596,-0.94394,334.18>
    5062 > view matrix models
    5063 > #10,0.35339,0.9199,0.16998,352.46,0.91374,-0.37837,0.14805,324.61,0.20051,0.103,-0.97426,334.2>
    5064 > ui mousemode right "move picked models"> ui mousemode right "translate
    5065 > selected models"> view matrix models
    5066 > #10,0.35339,0.9199,0.16998,339.75,0.91374,-0.37837,0.14805,350.37,0.20051,0.103,-0.97426,343.01>
    5067 > view matrix models
    5068 > #10,0.35339,0.9199,0.16998,335.09,0.91374,-0.37837,0.14805,353.64,0.20051,0.103,-0.97426,335.73>
    5069 > view matrix models
    5070 > #10,0.35339,0.9199,0.16998,338.46,0.91374,-0.37837,0.14805,354.76,0.20051,0.103,-0.97426,335.46>
    5071 > ui mousemode right "translate selected models"> ui mousemode right "rotate
    5072 > selected models"> view matrix models
    5073 > #10,0.34886,0.90839,0.23049,338.77,0.90686,-0.38926,0.16153,354.75,0.23645,0.15267,-0.95957,336.01>
    5074 > view matrix models
    5075 > #10,0.31175,0.90646,0.28484,338.94,0.91088,-0.37042,0.18188,355.01,0.27038,0.20276,-0.94116,336.58>
    5076 > fitmap sel inMap #1Fit molecule AlphaFold P61924 (#10) to map
    5077 > postprocess.mrc (#1) using 1420 atoms 
    5078 average map value = 0.007729, steps = 132 
    5079 shifted from previous position = 13.2 
    5080 rotated from previous position = 32.1 degrees 
    5081 atoms outside contour = 1082, contour level = 0.012094 
    5082  
    5083 Position of AlphaFold P61924 (#10) relative to postprocess.mrc (#1)
    5084 coordinates: 
    5085 Matrix rotation and translation 
    5086 0.16003408 0.76875563 0.61919615 342.73825944 
    5087 0.70217047 -0.52954063 0.47596571 350.81279439 
    5088 0.69379084 0.35861052 -0.62454205 326.83209386 
    5089 Axis -0.76117753 -0.48382861 -0.43187804 
    5090 Axis point 0.00000000 68.50464302 64.30358461 
    5091 Rotation angle (degrees) 175.57880129 
    5092 Shift along axis -571.76953314 
    5093  
    5094 > view matrix models
    5095 > #10,0.47263,0.83858,0.27091,342.34,0.88089,-0.44067,-0.17274,347.93,-0.025471,0.32029,-0.94698,321.12>
    5096 > view matrix models
    5097 > #10,0.24127,0.92096,0.30597,341.95,0.24412,-0.36274,0.89935,352.37,0.93925,-0.14229,-0.31234,327.16>
    5098 > view matrix models
    5099 > #10,0.089116,0.82987,0.55079,342.31,-0.78026,-0.28555,0.55647,345.75,0.61908,-0.47935,0.62207,329.83>
    5100 > view matrix models
    5101 > #10,-0.47438,-0.76909,-0.42833,324.11,0.36461,-0.61452,0.69959,350.2,-0.80126,0.17569,0.57193,326.56>
    5102 > view matrix models
    5103 > #10,0.8148,0.094127,0.57204,341.65,-0.53759,0.49204,0.68476,352.18,-0.21701,-0.86547,0.45151,322.57>
    5104 > view matrix models
    5105 > #10,-0.87376,-0.081407,-0.47949,325.83,-0.48429,0.054866,0.87319,351.16,-0.044775,0.99517,-0.087364,330.5>
    5106 > view matrix models
    5107 > #10,-0.40191,0.13704,-0.90537,326.52,-0.52762,0.77344,0.35129,351.66,0.74839,0.61887,-0.23855,331.1>
    5108 > view matrix models
    5109 > #10,-0.32465,-0.94451,-0.049995,326.28,-0.89222,0.32336,-0.31525,343.02,0.31392,-0.057737,-0.94769,320.55>
    5110 > view matrix models
    5111 > #10,-0.31501,-0.94741,-0.05641,326.27,-0.82142,0.30193,-0.48384,342.12,0.47543,-0.10608,-0.87334,321.52>
    5112 > ui mousemode right "translate selected models"> view matrix models
    5113 > #10,-0.31501,-0.94741,-0.05641,341.43,-0.82142,0.30193,-0.48384,348.71,0.47543,-0.10608,-0.87334,331.34>
    5114 > view matrix models
    5115 > #10,-0.31501,-0.94741,-0.05641,337.08,-0.82142,0.30193,-0.48384,348.47,0.47543,-0.10608,-0.87334,330.53>
    5116 > ui mousemode right "rotate selected models"> view matrix models
    5117 > #10,0.010611,-0.96565,-0.25962,337.18,-0.51124,0.2179,-0.83136,347.18,0.85937,0.14155,-0.49137,336.25>
    5118 > ui mousemode right "translate selected models"> view matrix models
    5119 > #10,0.010611,-0.96565,-0.25962,339.55,-0.51124,0.2179,-0.83136,353.43,0.85937,0.14155,-0.49137,329.03>
    5120 > fitmap sel inMap #1Fit molecule AlphaFold P61924 (#10) to map
    5121 > postprocess.mrc (#1) using 1420 atoms 
    5122 average map value = 0.009324, steps = 52 
    5123 shifted from previous position = 2.72 
    5124 rotated from previous position = 13.3 degrees 
    5125 atoms outside contour = 889, contour level = 0.012094 
    5126  
    5127 Position of AlphaFold P61924 (#10) relative to postprocess.mrc (#1)
    5128 coordinates: 
    5129 Matrix rotation and translation 
    5130 0.17048332 -0.93854234 -0.30012280 342.77250355 
    5131 -0.36432141 0.22295977 -0.90418960 353.65281294 
    5132 0.91553555 0.26349041 -0.30392015 330.16464207 
    5133 Axis 0.65572776 -0.68267069 0.32246215 
    5134 Axis point 206.25695508 0.00000000 375.82229589 
    5135 Rotation angle (degrees) 117.08028278 
    5136 Shift along axis 89.80263539 
    5137  
    5138 > volume #1 level 0.009189> volume #1 level 0.007115> volume #1 level 0.01389>
    5139 > hide #10 models> hide #!1 models> show #!1 models> volume #1 level 0.009189>
    5140 > show #9 models> hide #9 models> ui tool show AlphaFoldFetching compressed
    5141 > Q9QZE5 UniProt info from https://www.uniprot.org/uniprot/Q9QZE5.xml 
    5142 > alphafold match Q9QZE5Fetching compressed AlphaFold Q9QZE5 from
    5143 > https://alphafold.ebi.ac.uk/files/AF-Q9QZE5-F1-model_v4.cif 
    5144 1 AlphaFold model found using UniProt identifier: Q9QZE5 (UniProt Q9QZE5) 
    5145 | Sequence Similarity 
    5146 --- 
    5147 AlphaFold Model| Query Sequence| Identity %| Coverage % 
    5148 Q9QZE5 | Q9QZE5 | 100.0 | 100.0   
    5149 Opened 1 AlphaFold model 
    5150 > select subtract #10Nothing selected 
    5151 > select add #116830 atoms, 6947 bonds, 874 residues, 1 model selected 
    5152 > ui mousemode right "translate selected models"> view matrix models
    5153 > #11,1,0,0,356.03,0,1,0,165.68,0,0,1,138.04> view matrix models
    5154 > #11,1,0,0,359.53,0,1,0,310.73,0,0,1,363.97> view matrix models
    5155 > #11,1,0,0,325.44,0,1,0,350.8,0,0,1,353.56> ui mousemode right "rotate
    5156 > selected models"> view matrix models
    5157 > #11,0.9222,0.0092431,-0.38659,322.21,0.3867,-0.02198,0.92194,365.83,2.4106e-05,-0.99972,-0.023845,352.54>
    5158 > view matrix models
    5159 > #11,0.9086,0.21861,-0.3559,320.97,0.37966,-0.077076,0.92191,366.2,0.17411,-0.97276,-0.15303,351.69>
    5160 > view matrix models
    5161 > #11,0.8827,0.31881,-0.34526,320.3,0.448,-0.34905,0.82308,367.45,0.14189,-0.88121,-0.45093,348.67>
    5162 > ui mousemode right "translate selected models"> view matrix models
    5163 > #11,0.8827,0.31881,-0.34526,325.98,0.448,-0.34905,0.82308,376,0.14189,-0.88121,-0.45093,348.84>
    5164 > ui mousemode right "rotate selected models"> fitmap sel inMap #1Fit molecule
    5165 > AlphaFold Q9QZE5 (#11) to map postprocess.mrc (#1) using 6830 atoms 
    5166 average map value = 0.006168, steps = 184 
    5167 shifted from previous position = 19 
    5168 rotated from previous position = 37.2 degrees 
    5169 atoms outside contour = 4962, contour level = 0.0091892 
    5170  
    5171 Position of AlphaFold Q9QZE5 (#11) relative to postprocess.mrc (#1)
    5172 coordinates: 
    5173 Matrix rotation and translation 
    5174 0.64421407 0.04551772 -0.76348960 327.38100329 
    5175 0.76207078 0.04674821 0.64580394 357.15848158 
    5176 0.06508729 -0.99786910 -0.00457187 351.49633213 
    5177 Axis -0.83213029 -0.41947754 0.36276406 
    5178 Axis point 0.00000000 331.22710000 127.31166795 
    5179 Rotation angle (degrees) 99.02148331 
    5180 Shift along axis -294.73337652 
    5181  
    5182 > view matrix models
    5183 > #11,0.68657,0.17865,-0.70477,327,0.72706,-0.17094,0.66495,358.75,-0.0016791,-0.96895,-0.24726,349.28>
    5184 > ui mousemode right "rotate selected models"> view matrix models
    5185 > #11,0.70704,0.23648,-0.66646,326.93,0.69939,-0.37331,0.60951,359.67,-0.10466,-0.89706,-0.42933,347.16>
    5186 > ui mousemode right "translate selected models"> view matrix models
    5187 > #11,0.70704,0.23648,-0.66646,317.9,0.69939,-0.37331,0.60951,366.94,-0.10466,-0.89706,-0.42933,348.03>
    5188 > view matrix models
    5189 > #11,0.70704,0.23648,-0.66646,320.79,0.69939,-0.37331,0.60951,366.61,-0.10466,-0.89706,-0.42933,348.18>
    5190 > ui mousemode right "rotate selected models"> view matrix models
    5191 > #11,0.72406,0.24939,-0.64307,320.91,0.65006,-0.55839,0.51539,367.07,-0.23055,-0.79121,-0.56643,346.13>
    5192 > view matrix models
    5193 > #11,0.69859,0.21192,-0.68342,320.81,0.71322,-0.28278,0.64137,366.26,-0.057342,-0.93548,-0.34869,349.16>
    5194 > view matrix models
    5195 > #11,0.70353,0.18375,-0.6865,320.99,0.70318,-0.31989,0.63499,366.45,-0.10293,-0.92947,-0.35426,348.99>
    5196 > ui mousemode right "translate selected models"> view matrix models
    5197 > #11,0.70353,0.18375,-0.6865,320.82,0.70318,-0.31989,0.63499,367.1,-0.10293,-0.92947,-0.35426,344.89>
    5198 > ui mousemode right "rotate selected models"> view matrix models
    5199 > #11,0.65363,0.082985,-0.75225,320.91,0.72471,-0.35506,0.59053,367.04,-0.21809,-0.93115,-0.29222,345.16>
    5200 > view matrix models
    5201 > #11,0.70711,0.13906,-0.69329,321.09,0.68996,-0.35029,0.63344,367.27,-0.15477,-0.92626,-0.34365,344.85>
    5202 > ui mousemode right "translate selected models"> view matrix models
    5203 > #11,0.70711,0.13906,-0.69329,321.8,0.68996,-0.35029,0.63344,368.61,-0.15477,-0.92626,-0.34365,344.63>
    5204 > view matrix models
    5205 > #11,0.70711,0.13906,-0.69329,322.37,0.68996,-0.35029,0.63344,369.31,-0.15477,-0.92626,-0.34365,344.66>
    5206 > view matrix models
    5207 > #11,0.70711,0.13906,-0.69329,324.12,0.68996,-0.35029,0.63344,370.34,-0.15477,-0.92626,-0.34365,345.55>
    5208 > view matrix models
    5209 > #11,0.70711,0.13906,-0.69329,322.98,0.68996,-0.35029,0.63344,370.13,-0.15477,-0.92626,-0.34365,345.67>
    5210 > select #9:150-7004326 atoms, 4409 bonds, 551 residues, 1 model selected 
    5211 > select #11:150-7004309 atoms, 4386 bonds, 551 residues, 1 model selected 
    5212 > select #11:200-6003131 atoms, 3181 bonds, 401 residues, 1 model selected 
    5213 > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#11) to map
    5214 > postprocess.mrc (#1) using 3131 atoms 
    5215 average map value = 0.009322, steps = 128 
    5216 shifted from previous position = 19.2 
    5217 rotated from previous position = 36.2 degrees 
    5218 atoms outside contour = 1622, contour level = 0.0091892 
    5219  
    5220 Position of AlphaFold Q9QZE5 (#11) relative to postprocess.mrc (#1)
    5221 coordinates: 
    5222 Matrix rotation and translation 
    5223 0.30390324 -0.27752474 -0.91138512 331.87408644 
    5224 0.81454234 -0.42047696 0.39964972 364.79747780 
    5225 -0.49412913 -0.86381661 0.09827134 355.85181394 
    5226 Axis -0.73399556 -0.24239984 0.63442323 
    5227 Axis point 0.00000000 292.03466120 189.63734203 
    5228 Rotation angle (degrees) 120.60730761 
    5229 Shift along axis -106.26030233 
    5230  
    5231 > ui mousemode right "translate selected models"> view matrix models
    5232 > #11,0.3039,-0.27752,-0.91139,332.27,0.81454,-0.42048,0.39965,364.09,-0.49413,-0.86382,0.098271,356.72>
    5233 > ui mousemode right "rotate selected models"> view matrix models
    5234 > #11,0.27029,-0.28399,-0.91994,332.18,0.8111,-0.44762,0.3765,364.09,-0.51871,-0.84793,0.10935,356.65>
    5235 > select #11:200-6003131 atoms, 3181 bonds, 401 residues, 1 model selected 
    5236 > select #11:200-6003131 atoms, 3181 bonds, 401 residues, 1 model selected 
    5237 > view matrix models
    5238 > #11,0.25475,-0.2793,-0.92579,332.07,0.83477,-0.41974,0.35634,363.79,-0.48812,-0.8636,0.12622,356.95>
    5239 > ui mousemode right "translate selected models"> view matrix models
    5240 > #11,0.25475,-0.2793,-0.92579,331.84,0.83477,-0.41974,0.35634,363.99,-0.48812,-0.8636,0.12622,355.77>
    5241 > select #11:200-6003131 atoms, 3181 bonds, 401 residues, 1 model selected 
    5242 > view matrix models
    5243 > #11,0.25475,-0.2793,-0.92579,331.9,0.83477,-0.41974,0.35634,364.24,-0.48812,-0.8636,0.12622,354.72>
    5244 > volume #1 level 0.00753> volume #1 level 0.01057> select #11:1-2241761
    5245 > atoms, 1788 bonds, 224 residues, 1 model selected 
    5246 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5247 > (#11) to map postprocess.mrc (#1) using 1761 atoms 
    5248 average map value = 0.01173, steps = 68 
    5249 shifted from previous position = 9.15 
    5250 rotated from previous position = 24.1 degrees 
    5251 atoms outside contour = 823, contour level = 0.010572 
    5252  
    5253 > volume #1 level 0.008774> volume #1 level 0.006146> hide #!1 models> select
    5254 > #11:600-100Nothing selected 
    5255 > select #11:600-10002157 atoms, 2199 bonds, 275 residues, 1 model selected 
    5256 > show #!1 models> fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#11) to
    5257 > map postprocess.mrc (#1) using 2157 atoms 
    5258 average map value = 0.007662, steps = 180 
    5259 shifted from previous position = 36.1 
    5260 rotated from previous position = 68.3 degrees 
    5261 atoms outside contour = 810, contour level = 0.0061465 
    5262  
    5263 Position of AlphaFold Q9QZE5 (#11) relative to postprocess.mrc (#1)
    5264 coordinates: 
    5265 Matrix rotation and translation 
    5266 0.76148885 0.54060767 -0.35760046 330.05520628 
    5267 0.64193837 -0.55263312 0.53151836 340.37180485 
    5268 0.08972105 -0.63430276 -0.76786076 354.04518222 
    5269 Axis -0.93057375 -0.35705791 0.08088350 
    5270 Axis point 0.00000000 179.94741315 154.00557546 
    5271 Rotation angle (degrees) 141.21504880 
    5272 Shift along axis -400.03674317 
    5273  
    5274 > view matrix models
    5275 > #11,0.76149,0.54061,-0.3576,333.13,0.64194,-0.55263,0.53152,344.1,0.089721,-0.6343,-0.76786,355.44>
    5276 > undo[Repeated 1 time(s)]> redo> undo[Repeated 4 time(s)]> redo[Repeated 5
    5277 > time(s)]Drag select of 1 postprocess.mrc 
    5278 > undo[Repeated 3 time(s)]> redo[Repeated 1 time(s)]> undo[Repeated 4
    5279 > time(s)]> select add #116830 atoms, 6947 bonds, 874 residues, 1 model
    5280 > selected 
    5281 > view matrix models
    5282 > #11,0.76149,0.54061,-0.3576,311.64,0.64194,-0.55263,0.53152,361.96,0.089721,-0.6343,-0.76786,347.28>
    5283 > ui mousemode right "rotate selected models"> view matrix models
    5284 > #11,0.53048,-0.23713,-0.81386,311.44,0.61272,-0.5562,0.56143,362.09,-0.5858,-0.7965,-0.14976,350.16>
    5285 > view matrix models
    5286 > #11,0.63273,-0.2207,-0.74226,312.29,0.42526,-0.70202,0.57125,362.21,-0.64715,-0.6771,-0.35033,347.77>
    5287 > view matrix models
    5288 > #11,0.44433,0.080458,-0.89224,308.81,0.697,-0.65675,0.28787,360.89,-0.56282,-0.7498,-0.34789,348.5>
    5289 > view matrix models
    5290 > #11,0.54362,-0.27815,-0.7919,311.87,0.82504,0.0037442,0.56506,359.97,-0.1542,-0.96053,0.23152,355.62>
    5291 > view matrix models
    5292 > #11,-0.061484,-0.33761,-0.93927,308.7,0.84092,-0.52444,0.13346,359.59,-0.53765,-0.78165,0.31615,353.8>
    5293 > view matrix models
    5294 > #11,-0.23566,-0.13852,-0.96191,306.78,0.80998,-0.57494,-0.11565,357.85,-0.53702,-0.80639,0.24769,353.41>
    5295 > ui mousemode right "translate selected models"> view matrix models
    5296 > #11,-0.23566,-0.13852,-0.96191,332.21,0.80998,-0.57494,-0.11565,366.09,-0.53702,-0.80639,0.24769,356.19>
    5297 > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#11) to map
    5298 > postprocess.mrc (#1) using 6830 atoms 
    5299 average map value = 0.006152, steps = 88 
    5300 shifted from previous position = 5.62 
    5301 rotated from previous position = 9.14 degrees 
    5302 atoms outside contour = 4002, contour level = 0.0061465 
    5303  
    5304 Position of AlphaFold Q9QZE5 (#11) relative to postprocess.mrc (#1)
    5305 coordinates: 
    5306 Matrix rotation and translation 
    5307 -0.08853631 -0.08927349 -0.99206430 328.87288070 
    5308 0.81371062 -0.58091406 -0.02034415 362.70357604 
    5309 -0.57448790 -0.80905445 0.12407477 357.29597121 
    5310 Axis -0.62124086 -0.32891103 0.71125054 
    5311 Axis point 234.92409049 335.88873344 0.00000000 
    5312 Rotation angle (degrees) 140.59586808 
    5313 Shift along axis -69.47952713 
    5314  
    5315 > volume #1 level 0.01043> view matrix models
    5316 > #11,-0.088536,-0.089273,-0.99206,325.48,0.81371,-0.58091,-0.020344,351.26,-0.57449,-0.80905,0.12407,355.86>
    5317 > view matrix models
    5318 > #11,-0.088536,-0.089273,-0.99206,333.51,0.81371,-0.58091,-0.020344,354.7,-0.57449,-0.80905,0.12407,353.84>
    5319 > view matrix models
    5320 > #11,-0.088536,-0.089273,-0.99206,328.18,0.81371,-0.58091,-0.020344,355.32,-0.57449,-0.80905,0.12407,354.03>
    5321 > ui mousemode right "rotate selected models"> view matrix models
    5322 > #11,-0.28036,-0.26113,-0.92369,328.86,0.75357,-0.65594,-0.04329,355.31,-0.59458,-0.70821,0.38068,355.35>
    5323 > view matrix models
    5324 > #11,-0.030932,-0.050662,-0.99824,328.15,0.76228,-0.64718,0.0092245,355.69,-0.6465,-0.76066,0.058638,352.99>
    5325 > view matrix models
    5326 > #11,0.061156,-0.1302,-0.9896,329,0.95467,-0.28175,0.096068,355.16,-0.29133,-0.95061,0.10707,355.77>
    5327 > view matrix models
    5328 > #11,0.04603,-0.17237,-0.98396,329.21,0.96144,-0.2597,0.090472,355.02,-0.27113,-0.95018,0.15377,356.2>
    5329 > view matrix models
    5330 > #11,0.0023262,-0.10506,-0.99446,328.6,0.8618,-0.50423,0.055288,355.67,-0.50725,-0.85715,0.089372,354.29>
    5331 > view matrix models
    5332 > #11,-0.18991,-0.3505,-0.91711,329.74,0.88807,-0.45964,-0.0082315,355.06,-0.41865,-0.81601,0.39856,356.75>
    5333 > view matrix models
    5334 > #11,-0.080938,-0.34798,-0.934,330.03,0.98708,-0.15797,-0.026682,353.69,-0.13826,-0.9241,0.35627,358.11>
    5335 > view matrix models
    5336 > #11,0.011068,-0.0051088,-0.99993,328.06,0.98507,-0.17174,0.011781,354.05,-0.17179,-0.98513,0.0031317,355.64>
    5337 > view matrix models
    5338 > #11,0.52954,-0.35911,-0.76852,333.74,0.78751,-0.12862,0.60273,357.51,-0.31529,-0.92439,0.21469,356.35>
    5339 > view matrix models
    5340 > #11,0.57219,-0.27083,-0.77411,333.39,0.78422,-0.095517,0.61308,357.4,-0.23998,-0.95788,0.15774,356.39>
    5341 > ui mousemode right "rotate selected models"> ui mousemode right "translate
    5342 > selected models"> view matrix models
    5343 > #11,0.57219,-0.27083,-0.77411,335.51,0.78422,-0.095517,0.61308,362.58,-0.23998,-0.95788,0.15774,351.6>
    5344 > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#11) to map
    5345 > postprocess.mrc (#1) using 6830 atoms 
    5346 average map value = 0.0064, steps = 84 
    5347 shifted from previous position = 5.2 
    5348 rotated from previous position = 12.7 degrees 
    5349 atoms outside contour = 5219, contour level = 0.010434 
    5350  
    5351 Position of AlphaFold Q9QZE5 (#11) relative to postprocess.mrc (#1)
    5352 coordinates: 
    5353 Matrix rotation and translation 
    5354 0.66131608 -0.21078491 -0.71988247 333.61865897 
    5355 0.74780498 0.11012805 0.65472095 360.57382072 
    5356 -0.05872604 -0.97130919 0.23045545 348.57872255 
    5357 Axis -0.81301543 -0.33057836 0.47929516 
    5358 Axis point 0.00000000 392.94052784 96.12016323 
    5359 Rotation angle (degrees) 89.94558111 
    5360 Shift along axis -223.36292607 
    5361  
    5362 > view matrix models
    5363 > #11,0.66132,-0.21078,-0.71988,341.27,0.7478,0.11013,0.65472,365.27,-0.058726,-0.97131,0.23046,355.25>
    5364 > ui mousemode right "rotate selected models"> view matrix models
    5365 > #11,0.53948,-0.29131,-0.79,340.69,0.59896,-0.52665,0.60322,367.7,-0.59178,-0.79861,-0.10964,349.66>
    5366 > view matrix models
    5367 > #11,0.46778,-0.17957,-0.86541,339.24,0.68801,-0.54066,0.48407,367.22,-0.55482,-0.82185,-0.12936,349.78>
    5368 > ui mousemode right "translate selected models"> view matrix models
    5369 > #11,0.46778,-0.17957,-0.86541,332.04,0.68801,-0.54066,0.48407,368.06,-0.55482,-0.82185,-0.12936,351.26>
    5370 > ui mousemode right "rotate selected models"> view matrix models
    5371 > #11,0.1232,-0.023189,-0.99211,328.89,0.74196,-0.66175,0.10761,366.07,-0.65902,-0.74937,-0.064325,350.95>
    5372 > view matrix models
    5373 > #11,0.16935,-0.30285,-0.93787,330.98,0.7448,-0.58389,0.32303,367.3,-0.64544,-0.75323,0.12669,352.47>
    5374 > view matrix models
    5375 > #11,0.14032,-0.13117,-0.98138,329.62,0.74434,-0.63963,0.19192,366.6,-0.65289,-0.75741,0.0078783,351.57>
    5376 > view matrix models
    5377 > #11,0.23167,-0.1013,-0.9675,329.92,0.76523,-0.59508,0.24555,366.85,-0.60062,-0.79725,-0.060342,351.47>
    5378 > view matrix models
    5379 > #11,0.24437,-0.094002,-0.96511,329.95,0.76843,-0.58828,0.25187,366.87,-0.59143,-0.80318,-0.071526,351.45>
    5380 > ui mousemode right "translate selected models"> view matrix models
    5381 > #11,0.24437,-0.094002,-0.96511,329.54,0.76843,-0.58828,0.25187,361.23,-0.59143,-0.80318,-0.071526,350.08>
    5382 > ui mousemode right "rotate selected models"> view matrix models
    5383 > #11,0.28058,-0.25967,-0.92404,330.88,0.77353,-0.50879,0.37786,361.78,-0.56826,-0.82079,0.058108,351.25>
    5384 > view matrix models
    5385 > #11,0.28742,-0.25679,-0.92274,330.9,0.75767,-0.5284,0.38305,361.86,-0.58594,-0.80923,0.042695,351>
    5386 > ui mousemode right "translate selected models"> view matrix models
    5387 > #11,0.28742,-0.25679,-0.92274,333.19,0.75767,-0.5284,0.38305,365.36,-0.58594,-0.80923,0.042695,355.22>
    5388 > view matrix models
    5389 > #11,0.28742,-0.25679,-0.92274,331.2,0.75767,-0.5284,0.38305,365.15,-0.58594,-0.80923,0.042695,354.9>
    5390 > view matrix models
    5391 > #11,0.28742,-0.25679,-0.92274,331.85,0.75767,-0.5284,0.38305,365.37,-0.58594,-0.80923,0.042695,355.26>
    5392 > select up46543 atoms, 47426 bonds, 5886 residues, 13 models selected 
    5393 > select up46543 atoms, 47426 bonds, 5886 residues, 13 models selected 
    5394 > select down6830 atoms, 6947 bonds, 874 residues, 1 model selected 
    5395 > select #11:1-6004682 atoms, 4756 bonds, 600 residues, 1 model selected 
    5396 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5397 > (#11) to map postprocess.mrc (#1) using 4682 atoms 
    5398 average map value = 0.01021, steps = 60 
    5399 shifted from previous position = 1.22 
    5400 rotated from previous position = 7.73 degrees 
    5401 atoms outside contour = 2553, contour level = 0.010434 
    5402  
    5403 > select #11:600-10002157 atoms, 2199 bonds, 275 residues, 1 model selected 
    5404 > ui mousemode right "translate selected atoms"> volume #1 level 0.007668> ui
    5405 > mousemode right "rotate selected models"> ui mousemode right "translate
    5406 > selected atoms"> ui mousemode right "rotate selected models"> view matrix
    5407 > models
    5408 > #11,0.59822,-0.60725,-0.52286,337.58,0.30921,-0.42703,0.84972,366.3,-0.73927,-0.66999,-0.067694,353.2>
    5409 > view matrix models
    5410 > #11,0.77041,-0.50997,-0.38262,338.97,0.12293,-0.47006,0.87403,365.81,-0.62559,-0.7204,-0.29944,352.25>
    5411 > view matrix models
    5412 > #11,0.80145,-0.49595,-0.33423,339.41,0.030481,-0.52426,0.85101,365.44,-0.59728,-0.69223,-0.40505,351.5>
    5413 > view matrix models
    5414 > #11,0.81806,-0.46811,-0.33414,339.37,0.21046,-0.29705,0.93138,365.91,-0.53524,-0.83225,-0.14448,354.23>
    5415 > ui mousemode right "translate selected models"> view matrix models
    5416 > #11,0.81806,-0.46811,-0.33414,336.18,0.21046,-0.29705,0.93138,386.15,-0.53524,-0.83225,-0.14448,359.02>
    5417 > view matrix models
    5418 > #11,0.81806,-0.46811,-0.33414,336.3,0.21046,-0.29705,0.93138,388.9,-0.53524,-0.83225,-0.14448,350.26>
    5419 > view matrix models
    5420 > #11,0.81806,-0.46811,-0.33414,333.59,0.21046,-0.29705,0.93138,393.22,-0.53524,-0.83225,-0.14448,351.16>
    5421 > view matrix models
    5422 > #11,0.81806,-0.46811,-0.33414,333.2,0.21046,-0.29705,0.93138,389.47,-0.53524,-0.83225,-0.14448,356.78>
    5423 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5424 > (#11) to map postprocess.mrc (#1) using 2157 atoms 
    5425 average map value = 0.006694, steps = 136 
    5426 shifted from previous position = 5.04 
    5427 rotated from previous position = 47.1 degrees 
    5428 atoms outside contour = 1445, contour level = 0.0076678 
    5429  
    5430 > select #11:1-6004682 atoms, 4756 bonds, 600 residues, 1 model selected 
    5431 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5432 > (#11) to map postprocess.mrc (#1) using 4682 atoms 
    5433 average map value = 0.008066, steps = 172 
    5434 shifted from previous position = 26 
    5435 rotated from previous position = 33 degrees 
    5436 atoms outside contour = 2547, contour level = 0.0076678 
    5437  
    5438 > view matrix models
    5439 > #11,0.81806,-0.46811,-0.33414,331.26,0.21046,-0.29705,0.93138,386.86,-0.53524,-0.83225,-0.14448,361.45>
    5440 > select #11:1-6004682 atoms, 4756 bonds, 600 residues, 1 model selected 
    5441 > view matrix models
    5442 > #11,0.81806,-0.46811,-0.33414,331.71,0.21046,-0.29705,0.93138,389.51,-0.53524,-0.83225,-0.14448,361.48>
    5443 > volume #1 level 0.009742> view matrix models
    5444 > #11,0.81806,-0.46811,-0.33414,331,0.21046,-0.29705,0.93138,393.38,-0.53524,-0.83225,-0.14448,362.84>
    5445 > view matrix models
    5446 > #11,0.81806,-0.46811,-0.33414,331.73,0.21046,-0.29705,0.93138,391.47,-0.53524,-0.83225,-0.14448,362.19>
    5447 > ui mousemode right "rotate selected models"> view matrix models
    5448 > #11,0.83824,-0.4494,-0.30887,332.09,0.11909,-0.40187,0.90792,391.51,-0.53214,-0.79784,-0.28334,359.59>
    5449 > select #11:1-6004682 atoms, 4756 bonds, 600 residues, 1 model selected 
    5450 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5451 > (#11) to map postprocess.mrc (#1) using 4682 atoms 
    5452 average map value = 0.008066, steps = 120 
    5453 shifted from previous position = 7.42 
    5454 rotated from previous position = 8.32 degrees 
    5455 atoms outside contour = 3016, contour level = 0.0097424 
    5456  
    5457 > view matrix models
    5458 > #11,0.84176,-0.43937,-0.31369,331.92,0.02953,-0.54272,0.8394,391.99,-0.53905,-0.71583,-0.44386,356.49>
    5459 > ui mousemode right "translate selected models"> view matrix models
    5460 > #11,0.84176,-0.43937,-0.31369,331.75,0.02953,-0.54272,0.8394,399.15,-0.53905,-0.71583,-0.44386,356.2>
    5461 > select #11:1-6004682 atoms, 4756 bonds, 600 residues, 1 model selected 
    5462 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5463 > (#11) to map postprocess.mrc (#1) using 4682 atoms 
    5464 average map value = 0.008066, steps = 76 
    5465 shifted from previous position = 5.51 
    5466 rotated from previous position = 10.3 degrees 
    5467 atoms outside contour = 3011, contour level = 0.0097424 
    5468  
    5469 > ui mousemode right "translate selected models"> view matrix models
    5470 > #11,0.84176,-0.43937,-0.31369,332.74,0.02953,-0.54272,0.8394,408.41,-0.53905,-0.71583,-0.44386,358.5>
    5471 > ui mousemode right "rotate selected models"> view matrix models
    5472 > #11,0.85268,-0.42149,-0.30869,332.59,-0.0092437,-0.60295,0.79773,408.46,-0.52236,-0.67735,-0.51802,356.68>
    5473 > ui mousemode right "translate selected models"> view matrix models
    5474 > #11,0.85268,-0.42149,-0.30869,330.72,-0.0092437,-0.60295,0.79773,400.46,-0.52236,-0.67735,-0.51802,359.82>
    5475 > select #11:1-6004682 atoms, 4756 bonds, 600 residues, 1 model selected 
    5476 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5477 > (#11) to map postprocess.mrc (#1) using 4682 atoms 
    5478 average map value = 0.008065, steps = 68 
    5479 shifted from previous position = 7.07 
    5480 rotated from previous position = 4.73 degrees 
    5481 atoms outside contour = 3010, contour level = 0.0097424 
    5482  
    5483 > view matrix models
    5484 > #11,0.85268,-0.42149,-0.30869,335.88,-0.0092437,-0.60295,0.79773,405.4,-0.52236,-0.67735,-0.51802,361.17>
    5485 > ui mousemode right "rotate selected models"> view matrix models
    5486 > #11,0.81426,-0.46494,-0.34757,336.1,-0.098912,-0.70112,0.70615,405.87,-0.57201,-0.54061,-0.61688,358.39>
    5487 > view matrix models
    5488 > #11,0.87501,-0.41991,-0.24091,336.8,-0.20539,-0.77263,0.60071,405.97,-0.43838,-0.47615,-0.76231,353.76>
    5489 > ui mousemode right "translate selected models"> view matrix models
    5490 > #11,0.87501,-0.41991,-0.24091,331.82,-0.20539,-0.77263,0.60071,413.52,-0.43838,-0.47615,-0.76231,351.86>
    5491 > select #11:1-6004682 atoms, 4756 bonds, 600 residues, 1 model selected 
    5492 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5493 > (#11) to map postprocess.mrc (#1) using 4682 atoms 
    5494 average map value = 0.007962, steps = 124 
    5495 shifted from previous position = 9.84 
    5496 rotated from previous position = 14.7 degrees 
    5497 atoms outside contour = 3070, contour level = 0.0097424 
    5498  
    5499 > view matrix models
    5500 > #11,0.87501,-0.41991,-0.24091,331.62,-0.20539,-0.77263,0.60071,418.42,-0.43838,-0.47615,-0.76231,353.39>
    5501 > close #11> show #9 models> close #9> ui tool show AlphaFold> alphafold match
    5502 > Q9QZE51 AlphaFold model found using UniProt identifier: Q9QZE5 (UniProt
    5503 > Q9QZE5) 
    5504 | Sequence Similarity 
    5505 --- 
    5506 AlphaFold Model| Query Sequence| Identity %| Coverage % 
    5507 Q9QZE5 | Q9QZE5 | 100.0 | 100.0   
    5508 Opened 1 AlphaFold model 
    5509 > select add #96830 atoms, 6947 bonds, 874 residues, 1 model selected 
    5510 > view matrix models #9,1,0,0,118.39,0,1,0,297.25,0,0,1,-11.337> view matrix
    5511 > models #9,1,0,0,245.71,0,1,0,231.28,0,0,1,332.27> view matrix models
    5512 > #9,1,0,0,318.92,0,1,0,322.38,0,0,1,318.53> ui mousemode right "rotate
    5513 > selected models"> view matrix models
    5514 > #9,-0.20377,-0.7111,-0.67292,316.26,-0.33161,-0.59657,0.73084,338.5,-0.92115,0.37207,-0.11425,305.47>
    5515 > view matrix models
    5516 > #9,0.40243,-0.79107,-0.46073,319.66,-0.60017,-0.60801,0.51973,336.41,-0.69127,0.067364,-0.71945,303.33>
    5517 > view matrix models
    5518 > #9,0.2352,-0.84344,-0.48301,319.52,-0.43876,-0.53557,0.72157,337.79,-0.86728,0.042207,-0.49603,304.89>
    5519 > ui mousemode right "translate selected models"> view matrix models
    5520 > #9,0.2352,-0.84344,-0.48301,339.88,-0.43876,-0.53557,0.72157,350.3,-0.86728,0.042207,-0.49603,367.19>
    5521 > ui mousemode right "translate selected models"> view matrix models
    5522 > #9,0.2352,-0.84344,-0.48301,334.21,-0.43876,-0.53557,0.72157,375.08,-0.86728,0.042207,-0.49603,349.36>
    5523 > volume #1 level 0.007391> view matrix models
    5524 > #9,0.2352,-0.84344,-0.48301,333.8,-0.43876,-0.53557,0.72157,373.64,-0.86728,0.042207,-0.49603,349.96>
    5525 > ui mousemode right "rotate selected models"> view matrix models
    5526 > #9,0.037657,-0.31194,-0.94935,326.09,0.77359,0.61048,-0.16991,361.13,0.63256,-0.72802,0.26431,364.17>
    5527 > view matrix models
    5528 > #9,-0.95684,0.046043,-0.28694,326.81,0.27591,-0.16616,-0.94671,359.5,-0.091268,-0.98502,0.14629,363.62>
    5529 > ui mousemode right "translate selected models"> view matrix models
    5530 > #9,-0.95684,0.046043,-0.28694,331.91,0.27591,-0.16616,-0.94671,384.35,-0.091268,-0.98502,0.14629,352.91>
    5531 > view matrix models
    5532 > #9,-0.95684,0.046043,-0.28694,334.19,0.27591,-0.16616,-0.94671,381.78,-0.091268,-0.98502,0.14629,351.78>
    5533 > ui mousemode right "rotate selected models"> view matrix models
    5534 > #9,-0.97567,0.091702,-0.19917,334.52,0.18187,0.84583,-0.50148,378.03,0.12248,-0.5255,-0.84193,341.32>
    5535 > view matrix models
    5536 > #9,-0.89837,0.36972,0.23715,336.14,0.02583,0.58344,-0.81174,377.13,-0.43848,-0.72312,-0.5337,343.99>
    5537 > ui mousemode right "translate selected models"> view matrix models
    5538 > #9,-0.89837,0.36972,0.23715,349.82,0.02583,0.58344,-0.81174,385.82,-0.43848,-0.72312,-0.5337,339.33>
    5539 > view matrix models
    5540 > #9,-0.89837,0.36972,0.23715,367.42,0.02583,0.58344,-0.81174,403.32,-0.43848,-0.72312,-0.5337,355.2>
    5541 > view matrix models
    5542 > #9,-0.89837,0.36972,0.23715,347.32,0.02583,0.58344,-0.81174,411.68,-0.43848,-0.72312,-0.5337,366.13>
    5543 > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#9) to map postprocess.mrc
    5544 > (#1) using 6830 atoms 
    5545 average map value = 0.00421, steps = 156 
    5546 shifted from previous position = 18.9 
    5547 rotated from previous position = 17.4 degrees 
    5548 atoms outside contour = 5527, contour level = 0.0073912 
    5549  
    5550 Position of AlphaFold Q9QZE5 (#9) relative to postprocess.mrc (#1)
    5551 coordinates: 
    5552 Matrix rotation and translation 
    5553 -0.73010351 0.53319212 0.42738160 358.86359853 
    5554 -0.02431141 0.60476967 -0.79602928 406.65494151 
    5555 -0.68290397 -0.59157401 -0.42858180 351.34455561 
    5556 Axis 0.16238138 0.88180517 -0.44277752 
    5557 Axis point 235.81219866 0.00000000 214.20078465 
    5558 Rotation angle (degrees) 140.98287405 
    5559 Shift along axis 261.29572483 
    5560  
    5561 > view matrix models
    5562 > #9,-0.7301,0.53319,0.42738,360.6,-0.024311,0.60477,-0.79603,408.44,-0.6829,-0.59157,-0.42858,351.39>
    5563 > ui mousemode right "rotate selected models"> view matrix models
    5564 > #9,-0.58923,0.65779,0.46916,360.34,-0.26987,0.38709,-0.88166,408.8,-0.76156,-0.64612,-0.050566,354.56>
    5565 > ui mousemode right "translate selected models"> view matrix models
    5566 > #9,-0.58923,0.65779,0.46916,366.58,-0.26987,0.38709,-0.88166,401.14,-0.76156,-0.64612,-0.050566,353.1>
    5567 > view matrix models
    5568 > #9,-0.58923,0.65779,0.46916,367.47,-0.26987,0.38709,-0.88166,401.19,-0.76156,-0.64612,-0.050566,356.86>
    5569 > view matrix models
    5570 > #9,-0.58923,0.65779,0.46916,363.55,-0.26987,0.38709,-0.88166,400.39,-0.76156,-0.64612,-0.050566,356.65>
    5571 > view matrix models
    5572 > #9,-0.58923,0.65779,0.46916,359.48,-0.26987,0.38709,-0.88166,398.89,-0.76156,-0.64612,-0.050566,358.85>
    5573 > select #11:600-1000Nothing selected 
    5574 > select #9:600-10002157 atoms, 2199 bonds, 275 residues, 1 model selected 
    5575 > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#9) to map postprocess.mrc
    5576 > (#1) using 2157 atoms 
    5577 average map value = 0.007022, steps = 288 
    5578 shifted from previous position = 27 
    5579 rotated from previous position = 73.2 degrees 
    5580 atoms outside contour = 1209, contour level = 0.0073912 
    5581  
    5582 Position of AlphaFold Q9QZE5 (#9) relative to postprocess.mrc (#1)
    5583 coordinates: 
    5584 Matrix rotation and translation 
    5585 -0.99844607 0.01106931 0.05461602 354.19039505 
    5586 -0.00738039 0.94517341 -0.32648548 407.33487213 
    5587 -0.05523558 -0.32638123 -0.94362298 352.18820987 
    5588 Axis 0.00093588 0.98618731 -0.16563126 
    5589 Axis point 182.68264138 0.00000000 205.30019773 
    5590 Rotation angle (degrees) 176.80725389 
    5591 Shift along axis 343.70658489 
    5592  
    5593 > view matrix models
    5594 > #9,-0.99845,0.011069,0.054616,346.87,-0.0073804,0.94517,-0.32649,422.05,-0.055236,-0.32638,-0.94362,361.2>
    5595 > ui mousemode right "rotate selected models"> view matrix models
    5596 > #9,0.24304,0.92608,0.28863,344.77,-0.96288,0.1943,0.18735,429.39,0.11742,-0.32345,0.93893,376.16>
    5597 > view matrix models
    5598 > #9,0.043178,-0.27177,-0.96139,342.97,-0.82891,-0.54693,0.11738,434.25,-0.55772,0.79184,-0.24889,357.85>
    5599 > view matrix models
    5600 > #9,-0.74057,-0.19028,-0.64448,343.33,0.61567,-0.57643,-0.53729,432.2,-0.26926,-0.79469,0.54403,375.61>
    5601 > view matrix models
    5602 > #9,-0.74409,-0.15124,-0.65074,343.01,0.29262,0.80185,-0.52096,422.12,0.60059,-0.57806,-0.55239,367.28>
    5603 > view matrix models
    5604 > #9,-0.46898,0.34464,0.81319,351.49,-0.6805,0.44592,-0.58144,422.21,-0.56301,-0.82606,0.0254,371.21>
    5605 > view matrix models
    5606 > #9,-0.46134,0.36344,0.80937,351.35,-0.68581,0.43267,-0.5852,422.26,-0.56287,-0.82505,0.049642,371.39>
    5607 > view matrix models
    5608 > #9,-0.49256,0.49302,0.71716,349.67,-0.52447,0.48945,-0.69669,421.32,-0.69449,-0.71929,0.017488,370.15>
    5609 > ui mousemode right "translate selected models"> view matrix models
    5610 > #9,-0.49256,0.49302,0.71716,358.65,-0.52447,0.48945,-0.69669,413.12,-0.69449,-0.71929,0.017488,349.65>
    5611 > ui mousemode right "translate selected models"> view matrix models
    5612 > #9,-0.49256,0.49302,0.71716,356.89,-0.52447,0.48945,-0.69669,395.25,-0.69449,-0.71929,0.017488,359.86>
    5613 > view matrix models
    5614 > #9,-0.49256,0.49302,0.71716,355.55,-0.52447,0.48945,-0.69669,394.68,-0.69449,-0.71929,0.017488,359.36>
    5615 > view matrix models
    5616 > #9,-0.49256,0.49302,0.71716,356.39,-0.52447,0.48945,-0.69669,395.57,-0.69449,-0.71929,0.017488,359.67>
    5617 > view matrix models
    5618 > #9,-0.49256,0.49302,0.71716,356.3,-0.52447,0.48945,-0.69669,392.38,-0.69449,-0.71929,0.017488,359.47>
    5619 > view matrix models
    5620 > #9,-0.49256,0.49302,0.71716,357.6,-0.52447,0.48945,-0.69669,396.07,-0.69449,-0.71929,0.017488,360.07>
    5621 > view matrix models
    5622 > #9,-0.49256,0.49302,0.71716,354.2,-0.52447,0.48945,-0.69669,393.79,-0.69449,-0.71929,0.017488,359.11>
    5623 > ui mousemode right "rotate selected models"> view matrix models
    5624 > #9,0.1382,0.98029,-0.14121,345.38,0.67315,0.011612,0.73942,410.63,0.72648,-0.19724,-0.65827,353.01>
    5625 > view matrix models
    5626 > #9,0.79254,0.13893,-0.59378,348.99,0.40546,0.60723,0.68328,405.53,0.45549,-0.78228,0.42493,364.97>
    5627 > view matrix models
    5628 > #9,0.75026,-0.15287,-0.64322,350.54,0.30934,-0.77867,0.54588,413.9,-0.58431,-0.60853,-0.53692,354.24>
    5629 > view matrix models
    5630 > #9,0.71898,-0.24441,-0.65064,351.06,0.24016,-0.7911,0.56256,413.98,-0.65222,-0.56073,-0.51009,353.98>
    5631 > ui mousemode right "translate selected models"> view matrix models
    5632 > #9,0.71898,-0.24441,-0.65064,340.8,0.24016,-0.7911,0.56256,389.35,-0.65222,-0.56073,-0.51009,364.86>
    5633 > ui mousemode right "rotate selected models"> view matrix models
    5634 > #9,0.62148,-0.42664,-0.65707,341.83,-0.051117,-0.85901,0.50941,388.84,-0.78176,-0.283,-0.55566,362.32>
    5635 > view matrix models
    5636 > #9,0.5995,-0.46686,-0.65011,342.12,0.045189,-0.79122,0.60986,389.34,-0.7991,-0.39499,-0.45324,363.86>
    5637 > view matrix models
    5638 > #9,0.65675,-0.47926,-0.58222,342.84,0.073565,-0.72767,0.68197,389.52,-0.75051,-0.49072,-0.44265,364.7>
    5639 > ui mousemode right "translate selected models"> view matrix models
    5640 > #9,0.65675,-0.47926,-0.58222,344.93,0.073565,-0.72767,0.68197,386.95,-0.75051,-0.49072,-0.44265,365.94>
    5641 > ui mousemode right "rotate selected models"> view matrix models
    5642 > #9,0.66385,-0.55109,-0.50557,346.04,0.076659,-0.62231,0.77901,386.98,-0.74393,-0.5559,-0.37087,366.96>
    5643 > ui mousemode right "translate selected models"> view matrix models
    5644 > #9,0.66385,-0.55109,-0.50557,344.8,0.076659,-0.62231,0.77901,383.2,-0.74393,-0.5559,-0.37087,361.43>
    5645 > view matrix models
    5646 > #9,0.66385,-0.55109,-0.50557,344.64,0.076659,-0.62231,0.77901,381.03,-0.74393,-0.5559,-0.37087,365.37>
    5647 > view matrix models
    5648 > #9,0.66385,-0.55109,-0.50557,341.78,0.076659,-0.62231,0.77901,381.78,-0.74393,-0.5559,-0.37087,365.31>
    5649 > ui mousemode right "translate selected models"> ui mousemode right "rotate
    5650 > selected models"> view matrix models
    5651 > #9,0.60629,-0.55655,-0.56804,341.22,0.14486,-0.62505,0.76702,381.84,-0.78194,-0.54733,-0.29834,365.74>
    5652 > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#9) to map postprocess.mrc
    5653 > (#1) using 2157 atoms 
    5654 average map value = 0.006693, steps = 80 
    5655 shifted from previous position = 7.19 
    5656 rotated from previous position = 31.8 degrees 
    5657 atoms outside contour = 1351, contour level = 0.0073912 
    5658  
    5659 Position of AlphaFold Q9QZE5 (#9) relative to postprocess.mrc (#1)
    5660 coordinates: 
    5661 Matrix rotation and translation 
    5662 0.15378698 -0.84710107 -0.50869376 332.33451652 
    5663 0.16472506 -0.48563474 0.85850135 387.36757534 
    5664 -0.97427677 -0.21582094 0.06485448 366.46545007 
    5665 Axis -0.69423497 0.30086317 0.65384950 
    5666 Axis point 0.00000000 362.73488489 220.45875682 
    5667 Rotation angle (degrees) 129.30857204 
    5668 Shift along axis 125.43964356 
    5669  
    5670 > select #9:1-6004682 atoms, 4756 bonds, 600 residues, 1 model selected 
    5671 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5672 > (#9) to map postprocess.mrc (#1) using 4682 atoms 
    5673 average map value = 0.005104, steps = 84 
    5674 shifted from previous position = 16.1 
    5675 rotated from previous position = 21.6 degrees 
    5676 atoms outside contour = 3452, contour level = 0.0073912 
    5677  
    5678 > volume #1 level 0.008498> ui mousemode right "rotate selected models"> view
    5679 > matrix models
    5680 > #9,0.17474,0.1346,-0.97537,320.44,0.98437,-0.046172,0.16998,369.77,-0.022157,-0.98982,-0.14056,361.17>
    5681 > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#9) to map postprocess.mrc
    5682 > (#1) using 4682 atoms 
    5683 average map value = 0.009126, steps = 360 
    5684 shifted from previous position = 23.3 
    5685 rotated from previous position = 15.1 degrees 
    5686 atoms outside contour = 2456, contour level = 0.0084977 
    5687  
    5688 Position of AlphaFold Q9QZE5 (#9) relative to postprocess.mrc (#1)
    5689 coordinates: 
    5690 Matrix rotation and translation 
    5691 0.26722214 0.11515920 -0.95672917 313.71512644 
    5692 0.92844099 -0.29663683 0.22361556 356.10575290 
    5693 -0.25804972 -0.94802160 -0.18618645 345.95018384 
    5694 Axis -0.73772342 -0.43992476 0.51208433 
    5695 Axis point 0.00000000 236.47808024 193.71528561 
    5696 Rotation angle (degrees) 127.43063905 
    5697 Shift along axis -210.93906558 
    5698  
    5699 > view matrix models
    5700 > #9,0.62734,-0.137,-0.7666,315.51,0.62687,-0.49522,0.60149,364.62,-0.46204,-0.8579,-0.22479,346.22>
    5701 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5702 > (#9) to map postprocess.mrc (#1) using 4682 atoms 
    5703 average map value = 0.007414, steps = 200 
    5704 shifted from previous position = 10.5 
    5705 rotated from previous position = 25.5 degrees 
    5706 atoms outside contour = 2906, contour level = 0.0084977 
    5707  
    5708 > view matrix models
    5709 > #9,0.62689,-0.13779,-0.76682,315.51,0.62658,-0.49578,0.60133,364.62,-0.46303,-0.85745,-0.22446,346.22>
    5710 > view matrix models
    5711 > #9,0.78502,-0.30523,-0.53905,321.04,0.40342,-0.40846,0.81879,367.89,-0.47009,-0.86023,-0.19751,346.74>
    5712 > view matrix models
    5713 > #9,0.65986,-0.47284,-0.58396,321.22,0.32015,-0.52617,0.78781,368.03,-0.67977,-0.7068,-0.19582,345.54>
    5714 > view matrix models
    5715 > #9,0.63575,-0.49645,-0.59107,321.23,0.30396,-0.54286,0.78289,368.04,-0.70953,-0.67738,-0.19422,345.35>
    5716 > ui mousemode right "translate selected models"> view matrix models
    5717 > #9,0.63575,-0.49645,-0.59107,329.03,0.30396,-0.54286,0.78289,375.62,-0.70953,-0.67738,-0.19422,346.81>
    5718 > view matrix models
    5719 > #9,0.63575,-0.49645,-0.59107,329.49,0.30396,-0.54286,0.78289,376.63,-0.70953,-0.67738,-0.19422,349.62>
    5720 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5721 > (#9) to map postprocess.mrc (#1) using 4682 atoms 
    5722 average map value = 0.007466, steps = 92 
    5723 shifted from previous position = 9.33 
    5724 rotated from previous position = 13.4 degrees 
    5725 atoms outside contour = 2810, contour level = 0.0084977 
    5726  
    5727 > view matrix models
    5728 > #9,0.63575,-0.49645,-0.59107,323.05,0.30396,-0.54286,0.78289,378.79,-0.70953,-0.67738,-0.19422,355.99>
    5729 > view matrix models
    5730 > #9,0.63575,-0.49645,-0.59107,325.43,0.30396,-0.54286,0.78289,382.67,-0.70953,-0.67738,-0.19422,356>
    5731 > view matrix models
    5732 > #9,0.63575,-0.49645,-0.59107,315.63,0.30396,-0.54286,0.78289,385.33,-0.70953,-0.67738,-0.19422,358.5>
    5733 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5734 > (#9) to map postprocess.mrc (#1) using 4682 atoms 
    5735 average map value = 0.007414, steps = 188 
    5736 shifted from previous position = 9.6 
    5737 rotated from previous position = 19.1 degrees 
    5738 atoms outside contour = 2904, contour level = 0.0084977 
    5739  
    5740 > view matrix models
    5741 > #9,0.63575,-0.49645,-0.59107,313.27,0.30396,-0.54286,0.78289,391.49,-0.70953,-0.67738,-0.19422,358.97>
    5742 > view matrix models
    5743 > #9,0.63575,-0.49645,-0.59107,313.87,0.30396,-0.54286,0.78289,390.27,-0.70953,-0.67738,-0.19422,359.2>
    5744 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5745 > (#9) to map postprocess.mrc (#1) using 4682 atoms 
    5746 average map value = 0.00756, steps = 60 
    5747 shifted from previous position = 3.71 
    5748 rotated from previous position = 6.24 degrees 
    5749 atoms outside contour = 2853, contour level = 0.0084977 
    5750  
    5751 > select #9:600-10002157 atoms, 2199 bonds, 275 residues, 1 model selected 
    5752 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5753 > (#9) to map postprocess.mrc (#1) using 2157 atoms 
    5754 average map value = 0.006694, steps = 200 
    5755 shifted from previous position = 32.1 
    5756 rotated from previous position = 35.8 degrees 
    5757 atoms outside contour = 1666, contour level = 0.0084977 
    5758  
    5759 > select #9:650-10001763 atoms, 1796 bonds, 225 residues, 1 model selected 
    5760 > view matrix models
    5761 > #9,0.63575,-0.49645,-0.59107,330.89,0.30396,-0.54286,0.78289,403.52,-0.70953,-0.67738,-0.19422,367.13>
    5762 > view matrix models
    5763 > #9,0.63575,-0.49645,-0.59107,339.19,0.30396,-0.54286,0.78289,407.94,-0.70953,-0.67738,-0.19422,382.25>
    5764 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5765 > (#9) to map postprocess.mrc (#1) using 1763 atoms 
    5766 average map value = 0.007481, steps = 236 
    5767 shifted from previous position = 61.9 
    5768 rotated from previous position = 41.9 degrees 
    5769 atoms outside contour = 966, contour level = 0.0084977 
    5770  
    5771 > ui tool show AlphaFold> close #9> alphafold match Q9QZE51 AlphaFold model
    5772 > found using UniProt identifier: Q9QZE5 (UniProt Q9QZE5) 
    5773 | Sequence Similarity 
    5774 --- 
    5775 AlphaFold Model| Query Sequence| Identity %| Coverage % 
    5776 Q9QZE5 | Q9QZE5 | 100.0 | 100.0   
    5777 Opened 1 AlphaFold model 
    5778 > hide #9 models> show #9 models> select add #96830 atoms, 6947 bonds, 874
    5779 > residues, 1 model selected 
    5780 > view matrix models #9,1,0,0,231.53,0,1,0,352.98,0,0,1,252.26> view matrix
    5781 > models #9,1,0,0,225.37,0,1,0,330.91,0,0,1,352.68> view matrix models
    5782 > #9,1,0,0,329.42,0,1,0,337.51,0,0,1,364.07> ui mousemode right "rotate
    5783 > selected models"> view matrix models
    5784 > #9,0.5106,0.057525,0.85789,334.74,-0.81647,-0.28037,0.50474,348.72,0.26957,-0.95817,-0.096191,362.72>
    5785 > view matrix models
    5786 > #9,-0.33935,0.87755,-0.33875,318.06,-0.86466,-0.14919,0.47969,347.52,0.37041,0.45569,0.80941,360.15>
    5787 > view matrix models
    5788 > #9,0.93235,0.086502,-0.35105,325.96,0.2537,0.53526,0.80569,347.5,0.2576,-0.84025,0.47711,366.34>
    5789 > view matrix models
    5790 > #9,0.92134,-0.081696,-0.38007,326.88,0.35814,-0.20192,0.91157,353.65,-0.15122,-0.97599,-0.15678,361.55>
    5791 > view matrix models
    5792 > #9,0.91582,-0.11413,-0.38503,327.05,0.33247,-0.32231,0.88633,354.24,-0.22525,-0.93973,-0.25723,360.37>
    5793 > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#9) to map postprocess.mrc
    5794 > (#1) using 6830 atoms 
    5795 average map value = 0.006137, steps = 92 
    5796 shifted from previous position = 17.1 
    5797 rotated from previous position = 10.5 degrees 
    5798 atoms outside contour = 4797, contour level = 0.0084977 
    5799  
    5800 Position of AlphaFold Q9QZE5 (#9) relative to postprocess.mrc (#1)
    5801 coordinates: 
    5802 Matrix rotation and translation 
    5803 0.87097484 -0.15840588 -0.46509182 332.36931951 
    5804 0.43604691 -0.18701388 0.88027774 345.85308003 
    5805 -0.22641979 -0.96950162 -0.09381199 347.41581981 
    5806 Axis -0.94494368 -0.12192353 0.30367103 
    5807 Axis point 0.00000000 333.53825216 91.59869353 
    5808 Rotation angle (degrees) 101.82513874 
    5809 Shift along axis -250.73779687 
    5810  
    5811 > view matrix models
    5812 > #9,0.85722,-0.25265,-0.44871,333.12,0.38273,-0.2704,0.88341,346.35,-0.34453,-0.929,-0.13509,346.58>
    5813 > view matrix models
    5814 > #9,0.86448,-0.2189,-0.4525,332.87,0.40922,-0.21628,0.88643,346.05,-0.29191,-0.95147,-0.097393,347.13>
    5815 > view matrix models
    5816 > #9,0.36729,0.024632,-0.92978,326.49,0.74423,-0.60736,0.27791,344.69,-0.55786,-0.79405,-0.24141,344.4>
    5817 > ui mousemode right "translate selected models"> view matrix models
    5818 > #9,0.36729,0.024632,-0.92978,320.35,0.74423,-0.60736,0.27791,367.07,-0.55786,-0.79405,-0.24141,335.26>
    5819 > view matrix models
    5820 > #9,0.36729,0.024632,-0.92978,319.34,0.74423,-0.60736,0.27791,374.59,-0.55786,-0.79405,-0.24141,351.05>
    5821 > view matrix models
    5822 > #9,0.36729,0.024632,-0.92978,318.31,0.74423,-0.60736,0.27791,364.69,-0.55786,-0.79405,-0.24141,353.03>
    5823 > ui mousemode right "rotate selected models"> view matrix models
    5824 > #9,0.39074,0.007604,-0.92047,318.55,0.79623,-0.50455,0.33383,364.51,-0.46189,-0.86335,-0.2032,354>
    5825 > ui mousemode right "translate selected models"> view matrix models
    5826 > #9,0.39074,0.007604,-0.92047,319.03,0.79623,-0.50455,0.33383,361.58,-0.46189,-0.86335,-0.2032,354.38>
    5827 > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#9) to map postprocess.mrc
    5828 > (#1) using 6830 atoms 
    5829 average map value = 0.006748, steps = 124 
    5830 shifted from previous position = 5.03 
    5831 rotated from previous position = 19.9 degrees 
    5832 atoms outside contour = 4536, contour level = 0.0084977 
    5833  
    5834 Position of AlphaFold Q9QZE5 (#9) relative to postprocess.mrc (#1)
    5835 coordinates: 
    5836 Matrix rotation and translation 
    5837 0.52415675 -0.03555277 -0.85087937 323.94798716 
    5838 0.82736390 -0.21551011 0.51867559 361.60820896 
    5839 -0.20181346 -0.97585418 -0.08354600 353.04415803 
    5840 Axis -0.81057848 -0.35202969 0.46801455 
    5841 Axis point 0.00000000 298.25200642 154.24747069 
    5842 Rotation angle (degrees) 112.79590387 
    5843 Shift along axis -224.65229079 
    5844  
    5845 > view matrix models
    5846 > #9,0.52416,-0.035553,-0.85088,323.62,0.82736,-0.21551,0.51868,361.48,-0.20181,-0.97585,-0.083546,354.84>
    5847 > ui mousemode right "move picked models"> ui mousemode right "rotate selected
    5848 > models"> view matrix models
    5849 > #9,0.47843,-0.20219,-0.85453,324.65,0.80053,-0.29954,0.51907,362.01,-0.36091,-0.93241,0.01855,355.02>
    5850 > select #700-1000Nothing selected 
    5851 > select #9:700-10001362 atoms, 1385 bonds, 175 residues, 1 model selected 
    5852 > hide #!1 models> select clear> select #9/A:6065 atoms, 4 bonds, 1 residue, 1
    5853 > model selected 
    5854 > select #9:600-10002157 atoms, 2199 bonds, 275 residues, 1 model selected 
    5855 > select #9:604-10002123 atoms, 2164 bonds, 271 residues, 1 model selected 
    5856 > select #9/A:5847 atoms, 6 bonds, 1 residue, 1 model selected 
    5857 > select #9:1-5844566 atoms, 4638 bonds, 584 residues, 1 model selected 
    5858 > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#9) to map postprocess.mrc
    5859 > (#1) using 4566 atoms 
    5860 average map value = 0.009351, steps = 92 
    5861 shifted from previous position = 4.38 
    5862 rotated from previous position = 3.89 degrees 
    5863 atoms outside contour = 2341, contour level = 0.0084977 
    5864  
    5865 Position of AlphaFold Q9QZE5 (#9) relative to postprocess.mrc (#1)
    5866 coordinates: 
    5867 Matrix rotation and translation 
    5868 0.45889906 -0.18486325 -0.86904386 327.45356541 
    5869 0.79055463 -0.36145506 0.49434160 364.85244362 
    5870 -0.40550589 -0.91387954 -0.01972689 357.01911347 
    5871 Axis -0.79351902 -0.26119917 0.54963856 
    5872 Axis point 0.00000000 298.56869237 168.18761450 
    5873 Rotation angle (degrees) 117.46078746 
    5874 Shift along axis -158.90831637 
    5875  
    5876 > show #!1 models> ui mousemode right "rotate selected models"> view matrix
    5877 > models
    5878 > #9,0.27309,-0.67152,-0.68882,331.87,0.59697,-0.44319,0.66874,366.4,-0.75435,-0.59384,0.27985,356.44>
    5879 > view matrix models
    5880 > #9,0.8063,-0.1175,-0.57972,329.92,0.17462,-0.88911,0.42307,366.75,-0.56515,-0.44235,-0.69637,348.17>
    5881 > view matrix models
    5882 > #9,0.75803,-0.21289,-0.61649,330.2,0.39103,-0.60816,0.69082,367.31,-0.522,-0.76473,-0.37776,352.97>
    5883 > ui mousemode right "translate selected models"> view matrix models
    5884 > #9,0.75803,-0.21289,-0.61649,354.81,0.39103,-0.60816,0.69082,381.91,-0.522,-0.76473,-0.37776,346.1>
    5885 > view matrix models
    5886 > #9,0.75803,-0.21289,-0.61649,354.95,0.39103,-0.60816,0.69082,384.47,-0.522,-0.76473,-0.37776,355.72>
    5887 > select #9:604-10002123 atoms, 2164 bonds, 271 residues, 1 model selected 
    5888 > fitmap sel inMap #1Fit molecule AlphaFold Q9QZE5 (#9) to map postprocess.mrc
    5889 > (#1) using 2123 atoms 
    5890 average map value = 0.006782, steps = 112 
    5891 shifted from previous position = 1.97 
    5892 rotated from previous position = 52.8 degrees 
    5893 atoms outside contour = 1633, contour level = 0.0084977 
    5894  
    5895 Position of AlphaFold Q9QZE5 (#9) relative to postprocess.mrc (#1)
    5896 coordinates: 
    5897 Matrix rotation and translation 
    5898 0.15078311 -0.84758859 -0.50878093 332.31596289 
    5899 0.16314294 -0.48627331 0.85844199 387.32606835 
    5900 -0.97501222 -0.21244257 0.06495629 366.55082693 
    5901 Axis -0.69331528 0.30184886 0.65437083 
    5902 Axis point 0.00000000 362.68162268 221.17266955 
    5903 Rotation angle (degrees) 129.43978685 
    5904 Shift along axis 126.37436574 
    5905  
    5906 > view matrix models
    5907 > #9,0.15078,-0.84759,-0.50878,327.58,0.16314,-0.48627,0.85844,381.92,-0.97501,-0.21244,0.064956,363.32>
    5908 > ui mousemode right "rotate selected models"> view matrix models
    5909 > #9,0.54718,0.18399,-0.81654,318.8,0.83443,-0.043237,0.54942,377.76,0.065782,-0.98198,-0.17718,368.82>
    5910 > ui mousemode right "translate selected models"> view matrix models
    5911 > #9,0.54718,0.18399,-0.81654,321.53,0.83443,-0.043237,0.54942,375.98,0.065782,-0.98198,-0.17718,369.73>
    5912 > view matrix models
    5913 > #9,0.54718,0.18399,-0.81654,329.13,0.83443,-0.043237,0.54942,373.65,0.065782,-0.98198,-0.17718,370.98>
    5914 > view matrix models
    5915 > #9,0.54718,0.18399,-0.81654,326.81,0.83443,-0.043237,0.54942,371.45,0.065782,-0.98198,-0.17718,357.23>
    5916 > ui mousemode right "rotate selected models"> view matrix models
    5917 > #9,0.76141,-0.019108,-0.64799,329.95,0.60429,0.38283,0.69877,369.21,0.23472,-0.92362,0.30303,360.89>
    5918 > view matrix models
    5919 > #9,0.72763,-0.47084,-0.49887,334.18,0.56532,-0.00033507,0.82487,372.77,-0.38855,-0.88222,0.26593,359.09>
    5920 > view matrix models
    5921 > #9,0.53548,-0.47674,-0.69712,332.3,0.83644,0.41349,0.35972,366.81,0.11676,-0.77572,0.62018,362.1>
    5922 > view matrix models
    5923 > #9,0.55976,-0.55016,-0.61967,333.46,0.74824,0.014216,0.66328,371.77,-0.3561,-0.83494,0.41961,360.03>
    5924 > view matrix models
    5925 > #9,0.0083414,-0.40427,-0.9146,329.07,0.92123,-0.35263,0.16427,370.78,-0.38893,-0.84393,0.36948,359.63>
    5926 > select #9:200-5843015 atoms, 3063 bonds, 385 residues, 1 model selected 
    5927 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5928 > (#9) to map postprocess.mrc (#1) using 3015 atoms 
    5929 average map value = 0.008169, steps = 140 
    5930 shifted from previous position = 9.02 
    5931 rotated from previous position = 13.4 degrees 
    5932 atoms outside contour = 1695, contour level = 0.0084977 
    5933  
    5934 > ui mousemode right "translate selected models"> view matrix models
    5935 > #9,0.0083414,-0.40427,-0.9146,333.28,0.92123,-0.35263,0.16427,381.87,-0.38893,-0.84393,0.36948,365.25>
    5936 > select #9:100-5843782 atoms, 3840 bonds, 485 residues, 1 model selected 
    5937 > select #9:1-5844566 atoms, 4638 bonds, 584 residues, 1 model selected 
    5938 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5939 > (#9) to map postprocess.mrc (#1) using 4566 atoms 
    5940 average map value = 0.007329, steps = 144 
    5941 shifted from previous position = 12.3 
    5942 rotated from previous position = 12.3 degrees 
    5943 atoms outside contour = 2829, contour level = 0.0084977 
    5944  
    5945 > view matrix models
    5946 > #9,0.0083414,-0.40427,-0.9146,337.17,0.92123,-0.35263,0.16427,385.88,-0.38893,-0.84393,0.36948,365.25>
    5947 > ui mousemode right "rotate selected models"> view matrix models
    5948 > #9,0.20778,-0.49673,-0.84267,341.14,0.74791,-0.47455,0.46415,385.68,-0.63045,-0.72667,0.27291,360.36>
    5949 > view matrix models
    5950 > #9,0.23996,-0.52672,-0.81546,341.97,0.70114,-0.48694,0.52085,385.34,-0.67143,-0.69674,0.25246,359.43>
    5951 > view matrix models
    5952 > #9,0.25585,-0.4691,-0.84527,341.57,0.62735,-0.58469,0.51437,385.12,-0.73551,-0.66188,0.1447,357.76>
    5953 > ui mousemode right "translate selected models"> view matrix models
    5954 > #9,0.25585,-0.4691,-0.84527,337.8,0.62735,-0.58469,0.51437,382.88,-0.73551,-0.66188,0.1447,357.91>
    5955 > view matrix models
    5956 > #9,0.25585,-0.4691,-0.84527,339.82,0.62735,-0.58469,0.51437,387.09,-0.73551,-0.66188,0.1447,364>
    5957 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5958 > (#9) to map postprocess.mrc (#1) using 4566 atoms 
    5959 average map value = 0.008131, steps = 152 
    5960 shifted from previous position = 13.4 
    5961 rotated from previous position = 38 degrees 
    5962 atoms outside contour = 2572, contour level = 0.0084977 
    5963  
    5964 > select #9:604-10002123 atoms, 2164 bonds, 271 residues, 1 model selected 
    5965 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5966 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    5967 average map value = 0.006367, steps = 68 
    5968 shifted from previous position = 11.5 
    5969 rotated from previous position = 16.1 degrees 
    5970 atoms outside contour = 1630, contour level = 0.0084977 
    5971  
    5972 > view matrix models
    5973 > #9,0.25585,-0.4691,-0.84527,337.41,0.62735,-0.58469,0.51437,389.41,-0.73551,-0.66188,0.1447,361.76>
    5974 > ui mousemode right "translate selected models"> ui mousemode right "rotate
    5975 > selected models"> view matrix models
    5976 > #9,0.37394,-0.55141,-0.74574,340.64,0.50685,-0.55188,0.66222,389.38,-0.77671,-0.6256,0.07311,360.15>
    5977 > view matrix models
    5978 > #9,0.50566,-0.50901,-0.69657,342.02,0.42662,-0.55425,0.71471,389.15,-0.74987,-0.65857,-0.063104,359.35>
    5979 > ui mousemode right "translate selected models"> view matrix models
    5980 > #9,0.50566,-0.50901,-0.69657,337.55,0.42662,-0.55425,0.71471,394.21,-0.74987,-0.65857,-0.063104,358.41>
    5981 > view matrix models
    5982 > #9,0.50566,-0.50901,-0.69657,332.42,0.42662,-0.55425,0.71471,391.34,-0.74987,-0.65857,-0.063104,366.24>
    5983 > view matrix models
    5984 > #9,0.50566,-0.50901,-0.69657,331.23,0.42662,-0.55425,0.71471,391.93,-0.74987,-0.65857,-0.063104,365.89>
    5985 > view matrix models
    5986 > #9,0.50566,-0.50901,-0.69657,327.26,0.42662,-0.55425,0.71471,391.64,-0.74987,-0.65857,-0.063104,369.02>
    5987 > view matrix models
    5988 > #9,0.50566,-0.50901,-0.69657,335.89,0.42662,-0.55425,0.71471,386.47,-0.74987,-0.65857,-0.063104,367.12>
    5989 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5990 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    5991 average map value = 0.006782, steps = 92 
    5992 shifted from previous position = 2.19 
    5993 rotated from previous position = 27.9 degrees 
    5994 atoms outside contour = 1633, contour level = 0.0084977 
    5995  
    5996 > select #9:1-5844566 atoms, 4638 bonds, 584 residues, 1 model selected 
    5997 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    5998 > (#9) to map postprocess.mrc (#1) using 4566 atoms 
    5999 average map value = 0.008365, steps = 116 
    6000 shifted from previous position = 8.23 
    6001 rotated from previous position = 5.89 degrees 
    6002 atoms outside contour = 2673, contour level = 0.0084977 
    6003  
    6004 > view matrix models
    6005 > #9,0.50566,-0.50901,-0.69657,339.01,0.42662,-0.55425,0.71471,386.18,-0.74987,-0.65857,-0.063104,369>
    6006 > ui mousemode right "rotate selected models"> view matrix models
    6007 > #9,0.22416,-0.41869,-0.88003,332.38,0.40267,-0.78253,0.47487,384.8,-0.88747,-0.46081,-0.006816,366.29>
    6008 > view matrix models
    6009 > #9,0.24958,-0.44213,-0.86153,333.19,0.32071,-0.80173,0.50435,384.73,-0.9137,-0.40218,-0.0583,364.53>
    6010 > ui mousemode right "translate selected models"> view matrix models
    6011 > #9,0.24958,-0.44213,-0.86153,333.63,0.32071,-0.80173,0.50435,390.91,-0.9137,-0.40218,-0.0583,360.75>
    6012 > view matrix models
    6013 > #9,0.24958,-0.44213,-0.86153,336.43,0.32071,-0.80173,0.50435,393.51,-0.9137,-0.40218,-0.0583,360.3>
    6014 > ui mousemode right "rotate selected models"> view matrix models
    6015 > #9,0.31985,-0.55665,-0.7667,339.96,0.27095,-0.72168,0.637,394.23,-0.9079,-0.41148,-0.080006,360.12>
    6016 > view matrix models
    6017 > #9,0.43339,-0.40851,-0.8033,338.69,0.3922,-0.71703,0.57623,394.33,-0.81139,-0.56479,-0.15054,361.7>
    6018 > ui mousemode right "translate selected models"> view matrix models
    6019 > #9,0.43339,-0.40851,-0.8033,346.01,0.3922,-0.71703,0.57623,392.04,-0.81139,-0.56479,-0.15054,363.41>
    6020 > view matrix models
    6021 > #9,0.43339,-0.40851,-0.8033,335.77,0.3922,-0.71703,0.57623,392.97,-0.81139,-0.56479,-0.15054,363.27>
    6022 > ui mousemode right "rotate selected models"> view matrix models
    6023 > #9,0.37526,-0.44115,-0.81521,335.42,0.6563,-0.49461,0.56976,392.72,-0.65456,-0.74883,0.10392,370.98>
    6024 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6025 > (#9) to map postprocess.mrc (#1) using 4566 atoms 
    6026 average map value = 0.00813, steps = 76 
    6027 shifted from previous position = 1.91 
    6028 rotated from previous position = 7.21 degrees 
    6029 atoms outside contour = 2567, contour level = 0.0084977 
    6030  
    6031 > view matrix models
    6032 > #9,0.2927,-0.47966,-0.8272,335.05,0.66586,-0.51862,0.53634,392.59,-0.68627,-0.70778,0.16759,371.17>
    6033 > show #3 models> hide #3 models> show #3 models> hide #!1 models> select
    6034 > #9:1-2091643 atoms, 1668 bonds, 209 residues, 1 model selected 
    6035 > select #9:1-2081635 atoms, 1660 bonds, 208 residues, 1 model selected 
    6036 > select #9:1-2071624 atoms, 1649 bonds, 207 residues, 1 model selected 
    6037 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6038 > (#9) to map postprocess.mrc (#1) using 1624 atoms 
    6039 average map value = 0.008311, steps = 68 
    6040 shifted from previous position = 13.5 
    6041 rotated from previous position = 13.2 degrees 
    6042 atoms outside contour = 930, contour level = 0.0084977 
    6043  
    6044 > show #!1 models> view matrix models
    6045 > #9,0.35607,-0.49822,-0.79056,336.8,0.55476,-0.56809,0.60788,393.08,-0.75197,-0.65502,0.074109,367.89>
    6046 > view matrix models
    6047 > #9,0.14729,-0.48794,-0.86036,332.65,0.48246,-0.72391,0.49315,392.3,-0.86345,-0.48772,0.12879,365>
    6048 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6049 > (#9) to map postprocess.mrc (#1) using 1624 atoms 
    6050 average map value = 0.01134, steps = 76 
    6051 shifted from previous position = 5.66 
    6052 rotated from previous position = 32 degrees 
    6053 atoms outside contour = 679, contour level = 0.0084977 
    6054  
    6055 > select #9:207-5842950 atoms, 2996 bonds, 378 residues, 1 model selected 
    6056 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6057 > (#9) to map postprocess.mrc (#1) using 2950 atoms 
    6058 average map value = 0.008193, steps = 124 
    6059 shifted from previous position = 2.41 
    6060 rotated from previous position = 15.8 degrees 
    6061 atoms outside contour = 1654, contour level = 0.0084977 
    6062  
    6063 > hide #3 models> show #3 models> hide #3 models> show #4 models> hide #4
    6064 > models> show #5 models> select #9:604-10002123 atoms, 2164 bonds, 271
    6065 > residues, 1 model selected 
    6066 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6067 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6068 average map value = 0.006678, steps = 252 
    6069 shifted from previous position = 22.8 
    6070 rotated from previous position = 49.8 degrees 
    6071 atoms outside contour = 1532, contour level = 0.0084977 
    6072  
    6073 > view matrix models
    6074 > #9,0.39618,-0.42708,-0.8128,335.98,0.61508,-0.5338,0.58029,392.99,-0.6817,-0.72983,0.051211,369.42>
    6075 > view matrix models
    6076 > #9,0.53629,-0.34548,-0.77009,337.47,0.63827,-0.431,0.63784,393.01,-0.55227,-0.8336,-0.010633,371.25>
    6077 > view matrix models
    6078 > #9,0.89018,-0.24614,-0.3834,350.05,0.24658,-0.44732,0.85971,393.92,-0.38312,-0.85983,-0.3375,365.58>
    6079 > ui mousemode right "translate selected models"> view matrix models
    6080 > #9,0.89018,-0.24614,-0.3834,333.92,0.24658,-0.44732,0.85971,407.27,-0.38312,-0.85983,-0.3375,369.07>
    6081 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6082 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6083 average map value = 0.006524, steps = 152 
    6084 shifted from previous position = 21.2 
    6085 rotated from previous position = 21.5 degrees 
    6086 atoms outside contour = 1547, contour level = 0.0084977 
    6087  
    6088 > view matrix models
    6089 > #9,0.89018,-0.24614,-0.3834,332.42,0.24658,-0.44732,0.85971,419.6,-0.38312,-0.85983,-0.3375,374.46>
    6090 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6091 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6092 average map value = 0.006524, steps = 84 
    6093 shifted from previous position = 13.5 
    6094 rotated from previous position = 0.0285 degrees 
    6095 atoms outside contour = 1545, contour level = 0.0084977 
    6096  
    6097 > view matrix models
    6098 > #9,0.89018,-0.24614,-0.3834,333.86,0.24658,-0.44732,0.85971,420.55,-0.38312,-0.85983,-0.3375,377.8>
    6099 > view matrix models
    6100 > #9,0.89018,-0.24614,-0.3834,325.62,0.24658,-0.44732,0.85971,416.49,-0.38312,-0.85983,-0.3375,373.58>
    6101 > view matrix models
    6102 > #9,0.89018,-0.24614,-0.3834,319.54,0.24658,-0.44732,0.85971,419.01,-0.38312,-0.85983,-0.3375,374.13>
    6103 > ui mousemode right "rotate selected models"> view matrix models
    6104 > #9,0.91854,-0.22913,0.32216,337.12,-0.39532,-0.5259,0.7531,414.21,-0.0031295,-0.81911,-0.57363,369.55>
    6105 > ui mousemode right "translate selected models"> view matrix models
    6106 > #9,0.91854,-0.22913,0.32216,335.77,-0.39532,-0.5259,0.7531,425.61,-0.0031295,-0.81911,-0.57363,376.01>
    6107 > view matrix models
    6108 > #9,0.91854,-0.22913,0.32216,343.46,-0.39532,-0.5259,0.7531,420.62,-0.0031295,-0.81911,-0.57363,379.5>
    6109 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6110 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6111 average map value = 0.006781, steps = 132 
    6112 shifted from previous position = 15.9 
    6113 rotated from previous position = 55.5 degrees 
    6114 atoms outside contour = 1631, contour level = 0.0084977 
    6115  
    6116 > view matrix models
    6117 > #9,0.91854,-0.22913,0.32216,341.75,-0.39532,-0.5259,0.7531,415.68,-0.0031295,-0.81911,-0.57363,376.32>
    6118 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6119 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6120 average map value = 0.006781, steps = 72 
    6121 shifted from previous position = 6.12 
    6122 rotated from previous position = 0.0154 degrees 
    6123 atoms outside contour = 1631, contour level = 0.0084977 
    6124  
    6125 > view matrix models
    6126 > #9,0.91854,-0.22913,0.32216,341.47,-0.39532,-0.5259,0.7531,410.17,-0.0031295,-0.81911,-0.57363,373.68>
    6127 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6128 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6129 average map value = 0.006781, steps = 100 
    6130 shifted from previous position = 6.12 
    6131 rotated from previous position = 0.0323 degrees 
    6132 atoms outside contour = 1633, contour level = 0.0084977 
    6133  
    6134 > view matrix models
    6135 > #9,0.91854,-0.22913,0.32216,341.43,-0.39532,-0.5259,0.7531,407.42,-0.0031295,-0.81911,-0.57363,369.93>
    6136 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6137 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6138 average map value = 0.006782, steps = 68 
    6139 shifted from previous position = 4.65 
    6140 rotated from previous position = 0.0387 degrees 
    6141 atoms outside contour = 1633, contour level = 0.0084977 
    6142  
    6143 > view matrix models
    6144 > #9,0.91854,-0.22913,0.32216,343.31,-0.39532,-0.5259,0.7531,403.91,-0.0031295,-0.81911,-0.57363,365.44>
    6145 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6146 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6147 average map value = 0.006781, steps = 80 
    6148 shifted from previous position = 6.01 
    6149 rotated from previous position = 0.0278 degrees 
    6150 atoms outside contour = 1633, contour level = 0.0084977 
    6151  
    6152 > view matrix models
    6153 > #9,0.91854,-0.22913,0.32216,344.72,-0.39532,-0.5259,0.7531,402.05,-0.0031295,-0.81911,-0.57363,363.13>
    6154 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6155 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6156 average map value = 0.006782, steps = 68 
    6157 shifted from previous position = 3.25 
    6158 rotated from previous position = 0.056 degrees 
    6159 atoms outside contour = 1632, contour level = 0.0084977 
    6160  
    6161 > ui mousemode right "rotate selected models"> view matrix models
    6162 > #9,0.92735,-0.26644,0.26275,343.88,-0.36008,-0.44427,0.82034,402.72,-0.10184,-0.85535,-0.50794,364.63>
    6163 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6164 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6165 average map value = 0.006781, steps = 84 
    6166 shifted from previous position = 1.14 
    6167 rotated from previous position = 7.3 degrees 
    6168 atoms outside contour = 1631, contour level = 0.0084977 
    6169  
    6170 > view matrix models
    6171 > #9,0.97653,-0.15522,0.14932,339.6,-0.20792,-0.4985,0.84159,405.33,-0.056194,-0.85288,-0.51907,364.67>
    6172 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6173 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6174 average map value = 0.006781, steps = 76 
    6175 shifted from previous position = 6.06 
    6176 rotated from previous position = 9.62 degrees 
    6177 atoms outside contour = 1633, contour level = 0.0084977 
    6178  
    6179 > view matrix models
    6180 > #9,0.99388,-0.080233,0.075903,336.64,-0.10681,-0.52344,0.84534,406.58,-0.028093,-0.84828,-0.52881,364.55>
    6181 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6182 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6183 average map value = 0.006781, steps = 56 
    6184 shifted from previous position = 3.86 
    6185 rotated from previous position = 6.17 degrees 
    6186 atoms outside contour = 1633, contour level = 0.0084977 
    6187  
    6188 > view matrix models
    6189 > #9,0.99952,0.022525,-0.021198,332.52,0.030046,-0.54429,0.83836,407.73,0.0073465,-0.83859,-0.54471,364.24>
    6190 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6191 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6192 average map value = 0.006782, steps = 60 
    6193 shifted from previous position = 5.15 
    6194 rotated from previous position = 8.19 degrees 
    6195 atoms outside contour = 1633, contour level = 0.0084977 
    6196  
    6197 > view matrix models
    6198 > #9,0.99035,-0.035866,-0.13386,330.63,0.11068,-0.37661,0.91974,407.45,-0.083402,-0.92568,-0.36901,369.54>
    6199 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6200 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6201 average map value = 0.006782, steps = 76 
    6202 shifted from previous position = 1.82 
    6203 rotated from previous position = 13.1 degrees 
    6204 atoms outside contour = 1632, contour level = 0.0084977 
    6205  
    6206 > view matrix models
    6207 > #9,0.94532,-0.16382,-0.28201,328.87,0.25469,-0.16932,0.95209,405.63,-0.20372,-0.97185,-0.11834,375.75>
    6208 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6209 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6210 average map value = 0.006677, steps = 240 
    6211 shifted from previous position = 15 
    6212 rotated from previous position = 38.8 degrees 
    6213 atoms outside contour = 1532, contour level = 0.0084977 
    6214  
    6215 > view matrix models
    6216 > #9,0.94236,-0.32127,-0.093519,337.1,0.060473,-0.11136,0.99194,404.36,-0.3291,-0.94042,-0.085515,375.25>
    6217 > view matrix models
    6218 > #9,0.93747,-0.33175,-0.10527,337.01,0.042417,-0.1913,0.98061,405.75,-0.34546,-0.92377,-0.16527,372.78>
    6219 > view matrix models
    6220 > #9,0.95322,-0.29687,-0.056938,337.54,-0.071279,-0.4038,0.91207,408.15,-0.29375,-0.86534,-0.40607,365.67>
    6221 > ui mousemode right "translate selected models"> view matrix models
    6222 > #9,0.95322,-0.29687,-0.056938,329.08,-0.071279,-0.4038,0.91207,419.73,-0.29375,-0.86534,-0.40607,375.26>
    6223 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6224 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6225 average map value = 0.006877, steps = 428 
    6226 shifted from previous position = 11.8 
    6227 rotated from previous position = 55.7 degrees 
    6228 atoms outside contour = 1494, contour level = 0.0084977 
    6229  
    6230 > view matrix models
    6231 > #9,0.95322,-0.29687,-0.056938,327.92,-0.071279,-0.4038,0.91207,433.19,-0.29375,-0.86534,-0.40607,379.22>
    6232 > ui mousemode right "translate selected models"> ui mousemode right "rotate
    6233 > selected models"> view matrix models
    6234 > #9,0.51667,0.50061,0.69458,326.51,-0.2772,-0.66975,0.68891,434.44,0.81007,-0.54848,-0.20727,375.84>
    6235 > view matrix models
    6236 > #9,0.01178,0.71085,0.70325,321.44,-0.4121,-0.63734,0.65113,432.68,0.91106,-0.29748,0.28543,381.81>
    6237 > ui mousemode right "translate selected models"> view matrix models
    6238 > #9,0.01178,0.71085,0.70325,341.14,-0.4121,-0.63734,0.65113,445.68,0.91106,-0.29748,0.28543,394.39>
    6239 > view matrix models
    6240 > #9,0.01178,0.71085,0.70325,342.19,-0.4121,-0.63734,0.65113,443.06,0.91106,-0.29748,0.28543,362.02>
    6241 > view matrix models
    6242 > #9,0.01178,0.71085,0.70325,349.39,-0.4121,-0.63734,0.65113,450.8,0.91106,-0.29748,0.28543,367.93>
    6243 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6244 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6245 average map value = 0.006781, steps = 96 
    6246 shifted from previous position = 23.4 
    6247 rotated from previous position = 40.4 degrees 
    6248 atoms outside contour = 1633, contour level = 0.0084977 
    6249  
    6250 > ui mousemode right "rotate selected models"> view matrix models
    6251 > #9,0.052452,0.77204,0.63341,345.79,-0.42817,-0.55564,0.7127,449.9,0.90218,-0.30859,0.30141,368.66>
    6252 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6253 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6254 average map value = 0.006782, steps = 88 
    6255 shifted from previous position = 2.07 
    6256 rotated from previous position = 5.98 degrees 
    6257 atoms outside contour = 1633, contour level = 0.0084977 
    6258  
    6259 > view matrix models
    6260 > #9,0.10222,0.78283,0.61379,345,-0.43696,-0.51897,0.73467,449.4,0.89365,-0.3433,0.28902,369.35>
    6261 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6262 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6263 average map value = 0.006781, steps = 68 
    6264 shifted from previous position = 2.02 
    6265 rotated from previous position = 3.19 degrees 
    6266 atoms outside contour = 1632, contour level = 0.0084977 
    6267  
    6268 > view matrix models
    6269 > #9,0.17612,0.78168,0.5983,344.65,-0.4452,-0.47883,0.75665,448.79,0.87794,-0.39962,0.26368,370.33>
    6270 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6271 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6272 average map value = 0.006781, steps = 72 
    6273 shifted from previous position = 2.82 
    6274 rotated from previous position = 4.45 degrees 
    6275 atoms outside contour = 1633, contour level = 0.0084977 
    6276  
    6277 > view matrix models
    6278 > #9,0.21221,0.80166,0.55885,343.08,-0.44612,-0.42933,0.78527,448.09,0.86945,-0.41595,0.26653,370.87>
    6279 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6280 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6281 average map value = 0.006782, steps = 104 
    6282 shifted from previous position = 1.57 
    6283 rotated from previous position = 3.33 degrees 
    6284 atoms outside contour = 1631, contour level = 0.0084977 
    6285  
    6286 > view matrix models
    6287 > #9,0.21629,0.84535,0.48848,340.04,-0.44009,-0.36219,0.82167,447.07,0.87152,-0.39269,0.29369,370.89>
    6288 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6289 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6290 average map value = 0.006782, steps = 72 
    6291 shifted from previous position = 0.633 
    6292 rotated from previous position = 4.83 degrees 
    6293 atoms outside contour = 1635, contour level = 0.0084977 
    6294  
    6295 > view matrix models
    6296 > #9,0.25189,0.85883,0.44605,338.6,-0.439,-0.30936,0.84355,446.1,0.86245,-0.4083,0.29911,371.47>
    6297 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6298 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6299 average map value = 0.006781, steps = 60 
    6300 shifted from previous position = 1.67 
    6301 rotated from previous position = 3.32 degrees 
    6302 atoms outside contour = 1634, contour level = 0.0084977 
    6303  
    6304 > view matrix models
    6305 > #9,0.31454,0.86461,0.3918,337.1,-0.43453,-0.23582,0.86924,444.63,0.84394,-0.44366,0.30153,372.54>
    6306 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6307 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6308 average map value = 0.006782, steps = 84 
    6309 shifted from previous position = 2.69 
    6310 rotated from previous position = 4.91 degrees 
    6311 atoms outside contour = 1631, contour level = 0.0084977 
    6312  
    6313 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6314 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6315 average map value = 0.006781, steps = 64 
    6316 shifted from previous position = 0.0389 
    6317 rotated from previous position = 0.0388 degrees 
    6318 atoms outside contour = 1633, contour level = 0.0084977 
    6319  
    6320 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6321 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6322 average map value = 0.006782, steps = 48 
    6323 shifted from previous position = 0.0547 
    6324 rotated from previous position = 0.0663 degrees 
    6325 atoms outside contour = 1632, contour level = 0.0084977 
    6326  
    6327 > view matrix models
    6328 > #9,0.34767,0.86197,0.36897,336.63,-0.4519,-0.19075,0.87143,443.37,0.82153,-0.46971,0.32321,373.82>
    6329 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6330 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6331 average map value = 0.006782, steps = 52 
    6332 shifted from previous position = 1.86 
    6333 rotated from previous position = 3.06 degrees 
    6334 atoms outside contour = 1633, contour level = 0.0084977 
    6335  
    6336 > view matrix models
    6337 > #9,0.41831,0.85506,0.30641,335.33,-0.48722,-0.073476,0.87018,439.92,0.76657,-0.5133,0.38587,376.6>
    6338 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6339 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6340 average map value = 0.006782, steps = 72 
    6341 shifted from previous position = 4.35 
    6342 rotated from previous position = 7.34 degrees 
    6343 atoms outside contour = 1633, contour level = 0.0084977 
    6344  
    6345 > view matrix models
    6346 > #9,0.47673,0.83487,0.27516,335.21,-0.50535,0.0041705,0.8629,437.46,0.71927,-0.55043,0.42389,378.55>
    6347 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6348 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6349 average map value = 0.006782, steps = 72 
    6350 shifted from previous position = 3.29 
    6351 rotated from previous position = 5.17 degrees 
    6352 atoms outside contour = 1632, contour level = 0.0084977 
    6353  
    6354 > view matrix models
    6355 > #9,0.54586,0.80222,0.24182,335.45,-0.51991,0.097964,0.84859,434.37,0.65706,-0.58893,0.47055,380.72>
    6356 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6357 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6358 average map value = 0.006781, steps = 56 
    6359 shifted from previous position = 4.03 
    6360 rotated from previous position = 6.21 degrees 
    6361 atoms outside contour = 1632, contour level = 0.0084977 
    6362  
    6363 > view matrix models
    6364 > #9,0.58422,0.78548,0.20423,335.02,-0.52195,0.17093,0.83567,432.01,0.62149,-0.59481,0.50984,381.82>
    6365 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6366 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6367 average map value = 0.006782, steps = 48 
    6368 shifted from previous position = 2.44 
    6369 rotated from previous position = 4.39 degrees 
    6370 atoms outside contour = 1633, contour level = 0.0084977 
    6371  
    6372 > view matrix models
    6373 > #9,0.66003,0.72339,0.20263,336.73,-0.48903,0.20898,0.84686,431.34,0.57027,-0.65805,0.4917,382.95>
    6374 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6375 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6376 average map value = 0.006781, steps = 88 
    6377 shifted from previous position = 3.58 
    6378 rotated from previous position = 5.57 degrees 
    6379 atoms outside contour = 1630, contour level = 0.0084977 
    6380  
    6381 > view matrix models
    6382 > #9,0.69668,0.6908,0.1935,337.39,-0.48527,0.25515,0.83631,429.92,0.52835,-0.67654,0.51298,383.87>
    6383 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6384 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6385 average map value = 0.006782, steps = 68 
    6386 shifted from previous position = 2.15 
    6387 rotated from previous position = 3.52 degrees 
    6388 atoms outside contour = 1633, contour level = 0.0084977 
    6389  
    6390 > view matrix models
    6391 > #9,0.7674,0.61318,0.18737,339.25,-0.46018,0.32324,0.82689,428.1,0.44647,-0.72079,0.53022,385.2>
    6392 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6393 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6394 average map value = 0.006781, steps = 112 
    6395 shifted from previous position = 4.07 
    6396 rotated from previous position = 6.43 degrees 
    6397 atoms outside contour = 1633, contour level = 0.0084977 
    6398  
    6399 > view matrix models
    6400 > #9,0.83471,0.5055,0.21848,342.65,-0.39663,0.27661,0.87532,430.54,0.38204,-0.81729,0.43138,384.71>
    6401 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6402 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6403 average map value = 0.006782, steps = 72 
    6404 shifted from previous position = 5.02 
    6405 rotated from previous position = 8.94 degrees 
    6406 atoms outside contour = 1632, contour level = 0.0084977 
    6407  
    6408 > view matrix models
    6409 > #9,0.87367,0.4305,0.22666,344.72,-0.35999,0.25864,0.89639,431.63,0.32728,-0.86474,0.38094,384.3>
    6410 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6411 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6412 average map value = 0.006782, steps = 108 
    6413 shifted from previous position = 3.14 
    6414 rotated from previous position = 5.31 degrees 
    6415 atoms outside contour = 1633, contour level = 0.0084977 
    6416  
    6417 > view matrix models
    6418 > #9,0.89969,0.36941,0.23257,346.41,-0.33154,0.2317,0.91455,432.86,0.28395,-0.89992,0.33093,383.62>
    6419 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6420 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6421 average map value = 0.006782, steps = 68 
    6422 shifted from previous position = 2.64 
    6423 rotated from previous position = 4.48 degrees 
    6424 atoms outside contour = 1633, contour level = 0.0084977 
    6425  
    6426 > view matrix models
    6427 > #9,0.93128,0.28224,0.23034,348.53,-0.2932,0.20542,0.93372,434.19,0.21622,-0.93709,0.27405,382.59>
    6428 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6429 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6430 average map value = 0.006781, steps = 104 
    6431 shifted from previous position = 3.54 
    6432 rotated from previous position = 5.73 degrees 
    6433 atoms outside contour = 1633, contour level = 0.0084977 
    6434  
    6435 > view matrix models
    6436 > #9,0.94139,0.30383,0.14656,345.85,-0.21345,0.20008,0.95625,435.47,0.26121,-0.93148,0.2532,382.21>
    6437 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6438 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6439 average map value = 0.006782, steps = 112 
    6440 shifted from previous position = 2.1 
    6441 rotated from previous position = 5.33 degrees 
    6442 atoms outside contour = 1632, contour level = 0.0084977 
    6443  
    6444 > view matrix models
    6445 > #9,0.96161,0.25045,0.11219,346.23,-0.18303,0.28069,0.94219,433.5,0.20448,-0.92655,0.31575,383.43>
    6446 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6447 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6448 average map value = 0.006782, steps = 104 
    6449 shifted from previous position = 3.38 
    6450 rotated from previous position = 5.6 degrees 
    6451 atoms outside contour = 1633, contour level = 0.0084977 
    6452  
    6453 > view matrix models
    6454 > #9,0.98255,0.17574,0.060951,346.55,-0.12928,0.40957,0.90307,430.14,0.13375,-0.89519,0.42514,385.22>
    6455 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6456 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6457 average map value = 0.006781, steps = 60 
    6458 shifted from previous position = 5.04 
    6459 rotated from previous position = 8.87 degrees 
    6460 atoms outside contour = 1635, contour level = 0.0084977 
    6461  
    6462 > view matrix models
    6463 > #9,0.99365,0.095442,0.059664,348.19,-0.087313,0.31908,0.9437,433.46,0.071031,-0.94291,0.32539,382.74>
    6464 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6465 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6466 average map value = 0.006781, steps = 72 
    6467 shifted from previous position = 4.31 
    6468 rotated from previous position = 7.49 degrees 
    6469 atoms outside contour = 1633, contour level = 0.0084977 
    6470  
    6471 > view matrix models
    6472 > #9,0.99146,0.12345,-0.042143,344.69,0.0017896,0.31016,0.95068,434.92,0.13044,-0.94263,0.30729,382.93>
    6473 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6474 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6475 average map value = 0.006782, steps = 112 
    6476 shifted from previous position = 2.48 
    6477 rotated from previous position = 6.2 degrees 
    6478 atoms outside contour = 1631, contour level = 0.0084977 
    6479  
    6480 > ui mousemode right "translate selected models"> view matrix models
    6481 > #9,0.99146,0.12345,-0.042143,342.65,0.0017896,0.31016,0.95068,433.45,0.13044,-0.94263,0.30729,381.49>
    6482 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6483 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6484 average map value = 0.006782, steps = 88 
    6485 shifted from previous position = 2.9 
    6486 rotated from previous position = 0.0475 degrees 
    6487 atoms outside contour = 1634, contour level = 0.0084977 
    6488  
    6489 > view matrix models
    6490 > #9,0.99146,0.12345,-0.042143,339.45,0.0017896,0.31016,0.95068,435.85,0.13044,-0.94263,0.30729,382.38>
    6491 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6492 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6493 average map value = 0.006781, steps = 108 
    6494 shifted from previous position = 4.1 
    6495 rotated from previous position = 0.0423 degrees 
    6496 atoms outside contour = 1633, contour level = 0.0084977 
    6497  
    6498 > view matrix models
    6499 > #9,0.99146,0.12345,-0.042143,339.85,0.0017896,0.31016,0.95068,435.55,0.13044,-0.94263,0.30729,382.27>
    6500 > ui mousemode right "rotate selected models"> view matrix models
    6501 > #9,0.97798,0.15207,-0.14291,336.02,0.09135,0.30376,0.94836,436.57,0.18762,-0.94054,0.28318,382.1>
    6502 > ui mousemode right "translate selected models"> view matrix models
    6503 > #9,0.97798,0.15207,-0.14291,333.58,0.09135,0.30376,0.94836,435.4,0.18762,-0.94054,0.28318,380.77>
    6504 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6505 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6506 average map value = 0.006782, steps = 68 
    6507 shifted from previous position = 2.59 
    6508 rotated from previous position = 6.2 degrees 
    6509 atoms outside contour = 1633, contour level = 0.0084977 
    6510  
    6511 > ui mousemode right "translate selected models"> ui mousemode right "rotate
    6512 > selected models"> view matrix models
    6513 > #9,0.98965,-0.0080958,-0.14328,336.82,0.13841,0.31741,0.93813,435.32,0.037883,-0.94825,0.31525,380.29>
    6514 > view matrix models
    6515 > #9,0.99548,0.0093203,-0.09456,338.1,0.090332,0.21583,0.97224,437.87,0.02947,-0.97639,0.21401,377.51>
    6516 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6517 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6518 average map value = 0.006781, steps = 112 
    6519 shifted from previous position = 5.63 
    6520 rotated from previous position = 10.2 degrees 
    6521 atoms outside contour = 1633, contour level = 0.0084977 
    6522  
    6523 > view matrix models
    6524 > #9,0.99058,-0.068844,-0.11833,338.69,0.13205,0.2523,0.9586,437.29,-0.036138,-0.9652,0.25902,377.93>
    6525 > view matrix models
    6526 > #9,0.98606,-0.13199,-0.10131,340.32,0.12681,0.20197,0.97115,438.54,-0.10772,-0.97046,0.2159,375.74>
    6527 > ui mousemode right "translate selected models"> view matrix models
    6528 > #9,0.98606,-0.13199,-0.10131,339.76,0.12681,0.20197,0.97115,440.24,-0.10772,-0.97046,0.2159,376.78>
    6529 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6530 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6531 average map value = 0.006782, steps = 60 
    6532 shifted from previous position = 5.36 
    6533 rotated from previous position = 8.16 degrees 
    6534 atoms outside contour = 1633, contour level = 0.0084977 
    6535  
    6536 > ui mousemode right "rotate selected models"> view matrix models
    6537 > #9,0.94936,-0.27174,-0.15772,339.76,0.20035,0.13689,0.97011,442.23,-0.24203,-0.95258,0.1844,373.72>
    6538 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6539 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6540 average map value = 0.006782, steps = 96 
    6541 shifted from previous position = 6.44 
    6542 rotated from previous position = 9.34 degrees 
    6543 atoms outside contour = 1633, contour level = 0.0084977 
    6544  
    6545 > view matrix models
    6546 > #9,0.92398,-0.33277,-0.18846,339.37,0.23189,0.095634,0.96803,443.23,-0.30411,-0.93814,0.16553,372.06>
    6547 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6548 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6549 average map value = 0.006782, steps = 80 
    6550 shifted from previous position = 3.04 
    6551 rotated from previous position = 4.53 degrees 
    6552 atoms outside contour = 1632, contour level = 0.0084977 
    6553  
    6554 > view matrix models
    6555 > #9,0.8957,-0.38747,-0.21815,338.86,0.25872,0.055099,0.96438,444.09,-0.36165,-0.92023,0.1496,370.48>
    6556 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6557 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6558 average map value = 0.006781, steps = 68 
    6559 shifted from previous position = 2.83 
    6560 rotated from previous position = 4.21 degrees 
    6561 atoms outside contour = 1630, contour level = 0.0084977 
    6562  
    6563 > view matrix models
    6564 > #9,0.82815,-0.48586,-0.27947,337.42,0.31227,-0.014117,0.94989,445.38,-0.46546,-0.87392,0.14003,368.07>
    6565 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6566 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6567 average map value = 0.006781, steps = 56 
    6568 shifted from previous position = 5.42 
    6569 rotated from previous position = 8.03 degrees 
    6570 atoms outside contour = 1632, contour level = 0.0084977 
    6571  
    6572 > view matrix models
    6573 > #9,0.77325,-0.54677,-0.32114,336.17,0.34333,-0.064777,0.93698,446.1,-0.53311,-0.83477,0.13763,366.52>
    6574 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6575 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6576 average map value = 0.006781, steps = 88 
    6577 shifted from previous position = 3.6 
    6578 rotated from previous position = 5.47 degrees 
    6579 atoms outside contour = 1633, contour level = 0.0084977 
    6580  
    6581 > ui mousemode right "translate selected models"> view matrix models
    6582 > #9,0.77325,-0.54677,-0.32114,336.73,0.34333,-0.064777,0.93698,442.16,-0.53311,-0.83477,0.13763,365.74>
    6583 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6584 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6585 average map value = 0.006781, steps = 56 
    6586 shifted from previous position = 4.06 
    6587 rotated from previous position = 0.00419 degrees 
    6588 atoms outside contour = 1633, contour level = 0.0084977 
    6589  
    6590 > view matrix models
    6591 > #9,0.77325,-0.54677,-0.32114,337.22,0.34333,-0.064777,0.93698,440.84,-0.53311,-0.83477,0.13763,365.56>
    6592 > ui mousemode right "translate selected models"> fitmap sel inMap #1
    6593 > moveWholeMolecules falseFit molecule AlphaFold Q9QZE5 (#9) to map
    6594 > postprocess.mrc (#1) using 2123 atoms 
    6595 average map value = 0.006781, steps = 88 
    6596 shifted from previous position = 1.41 
    6597 rotated from previous position = 0.0229 degrees 
    6598 atoms outside contour = 1634, contour level = 0.0084977 
    6599  
    6600 > view matrix models
    6601 > #9,0.77325,-0.54677,-0.32114,335.31,0.34333,-0.064777,0.93698,438.09,-0.53311,-0.83477,0.13763,365.41>
    6602 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6603 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6604 average map value = 0.006781, steps = 48 
    6605 shifted from previous position = 3.35 
    6606 rotated from previous position = 0.0167 degrees 
    6607 atoms outside contour = 1633, contour level = 0.0084977 
    6608  
    6609 > view matrix models
    6610 > #9,0.77325,-0.54677,-0.32114,334.05,0.34333,-0.064777,0.93698,435.82,-0.53311,-0.83477,0.13763,365.27>
    6611 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6612 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6613 average map value = 0.006781, steps = 48 
    6614 shifted from previous position = 2.6 
    6615 rotated from previous position = 0.014 degrees 
    6616 atoms outside contour = 1633, contour level = 0.0084977 
    6617  
    6618 > view matrix models
    6619 > #9,0.77325,-0.54677,-0.32114,332.56,0.34333,-0.064777,0.93698,431.78,-0.53311,-0.83477,0.13763,364.96>
    6620 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6621 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6622 average map value = 0.006782, steps = 104 
    6623 shifted from previous position = 4.32 
    6624 rotated from previous position = 0.0647 degrees 
    6625 atoms outside contour = 1633, contour level = 0.0084977 
    6626  
    6627 > view matrix models
    6628 > #9,0.77325,-0.54677,-0.32114,331.95,0.34333,-0.064777,0.93698,428.43,-0.53311,-0.83477,0.13763,364.64>
    6629 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6630 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6631 average map value = 0.006782, steps = 72 
    6632 shifted from previous position = 3.43 
    6633 rotated from previous position = 0.0132 degrees 
    6634 atoms outside contour = 1631, contour level = 0.0084977 
    6635  
    6636 > view matrix models
    6637 > #9,0.77325,-0.54677,-0.32114,331.76,0.34333,-0.064777,0.93698,426.64,-0.53311,-0.83477,0.13763,364.47>
    6638 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6639 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6640 average map value = 0.006782, steps = 84 
    6641 shifted from previous position = 1.8 
    6642 rotated from previous position = 0.0296 degrees 
    6643 atoms outside contour = 1632, contour level = 0.0084977 
    6644  
    6645 > view matrix models
    6646 > #9,0.77325,-0.54677,-0.32114,331.81,0.34333,-0.064777,0.93698,423.53,-0.53311,-0.83477,0.13763,364.13>
    6647 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6648 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6649 average map value = 0.006782, steps = 84 
    6650 shifted from previous position = 3.12 
    6651 rotated from previous position = 0.0356 degrees 
    6652 atoms outside contour = 1633, contour level = 0.0084977 
    6653  
    6654 > view matrix models
    6655 > #9,0.77325,-0.54677,-0.32114,332.96,0.34333,-0.064777,0.93698,421.78,-0.53311,-0.83477,0.13763,363.84>
    6656 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6657 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6658 average map value = 0.006781, steps = 84 
    6659 shifted from previous position = 2.11 
    6660 rotated from previous position = 0.0418 degrees 
    6661 atoms outside contour = 1633, contour level = 0.0084977 
    6662  
    6663 > view matrix models
    6664 > #9,0.77325,-0.54677,-0.32114,334.11,0.34333,-0.064777,0.93698,419.59,-0.53311,-0.83477,0.13763,363.51>
    6665 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6666 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6667 average map value = 0.006782, steps = 68 
    6668 shifted from previous position = 2.49 
    6669 rotated from previous position = 0.0764 degrees 
    6670 atoms outside contour = 1633, contour level = 0.0084977 
    6671  
    6672 > view matrix models
    6673 > #9,0.77325,-0.54677,-0.32114,334.99,0.34333,-0.064777,0.93698,419.05,-0.53311,-0.83477,0.13763,364.92>
    6674 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6675 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6676 average map value = 0.006782, steps = 64 
    6677 shifted from previous position = 1.74 
    6678 rotated from previous position = 0.0445 degrees 
    6679 atoms outside contour = 1633, contour level = 0.0084977 
    6680  
    6681 > view matrix models
    6682 > #9,0.77325,-0.54677,-0.32114,336.11,0.34333,-0.064777,0.93698,417.5,-0.53311,-0.83477,0.13763,366.08>
    6683 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6684 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6685 average map value = 0.006781, steps = 44 
    6686 shifted from previous position = 2.24 
    6687 rotated from previous position = 0.0309 degrees 
    6688 atoms outside contour = 1633, contour level = 0.0084977 
    6689  
    6690 > view matrix models
    6691 > #9,0.77325,-0.54677,-0.32114,336.99,0.34333,-0.064777,0.93698,415.8,-0.53311,-0.83477,0.13763,367.35>
    6692 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6693 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6694 average map value = 0.006782, steps = 64 
    6695 shifted from previous position = 2.31 
    6696 rotated from previous position = 0.0358 degrees 
    6697 atoms outside contour = 1633, contour level = 0.0084977 
    6698  
    6699 > view matrix models
    6700 > #9,0.77325,-0.54677,-0.32114,340.17,0.34333,-0.064777,0.93698,412.98,-0.53311,-0.83477,0.13763,369.45>
    6701 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6702 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6703 average map value = 0.006781, steps = 52 
    6704 shifted from previous position = 4.76 
    6705 rotated from previous position = 0.0468 degrees 
    6706 atoms outside contour = 1631, contour level = 0.0084977 
    6707  
    6708 > view matrix models
    6709 > #9,0.77325,-0.54677,-0.32114,340.95,0.34333,-0.064777,0.93698,412.06,-0.53311,-0.83477,0.13763,371.98>
    6710 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6711 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6712 average map value = 0.006782, steps = 88 
    6713 shifted from previous position = 2.78 
    6714 rotated from previous position = 0.0444 degrees 
    6715 atoms outside contour = 1633, contour level = 0.0084977 
    6716  
    6717 > ui mousemode right "rotate selected models"> view matrix models
    6718 > #9,0.7178,-0.55951,-0.41439,338.12,0.3933,-0.16528,0.90443,413.67,-0.57453,-0.81218,0.10141,370.13>
    6719 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6720 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6721 average map value = 0.006782, steps = 72 
    6722 shifted from previous position = 3.9 
    6723 rotated from previous position = 6.92 degrees 
    6724 atoms outside contour = 1631, contour level = 0.0084977 
    6725  
    6726 > view matrix models
    6727 > #9,0.73481,-0.51747,-0.4385,337,0.41632,-0.1663,0.89388,413.71,-0.53548,-0.83939,0.09324,370.89>
    6728 > view matrix models
    6729 > #9,0.67825,-0.52005,-0.51915,334.29,0.45761,-0.25385,0.85215,414.67,-0.57494,-0.81554,0.065812,369.28>
    6730 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6731 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6732 average map value = 0.006782, steps = 64 
    6733 shifted from previous position = 3.87 
    6734 rotated from previous position = 7.06 degrees 
    6735 atoms outside contour = 1634, contour level = 0.0084977 
    6736  
    6737 > ui mousemode right "translate selected models"> view matrix models
    6738 > #9,0.67825,-0.52005,-0.51915,335,0.45761,-0.25385,0.85215,411.58,-0.57494,-0.81554,0.065812,369.68>
    6739 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6740 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6741 average map value = 0.006781, steps = 88 
    6742 shifted from previous position = 3.22 
    6743 rotated from previous position = 0.0832 degrees 
    6744 atoms outside contour = 1633, contour level = 0.0084977 
    6745  
    6746 > view matrix models
    6747 > #9,0.67825,-0.52005,-0.51915,336.13,0.45761,-0.25385,0.85215,410.05,-0.57494,-0.81554,0.065812,369.97>
    6748 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6749 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6750 average map value = 0.006781, steps = 100 
    6751 shifted from previous position = 1.92 
    6752 rotated from previous position = 0.025 degrees 
    6753 atoms outside contour = 1634, contour level = 0.0084977 
    6754  
    6755 > view matrix models
    6756 > #9,0.67825,-0.52005,-0.51915,337.5,0.45761,-0.25385,0.85215,407.2,-0.57494,-0.81554,0.065812,370.42>
    6757 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6758 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6759 average map value = 0.006781, steps = 84 
    6760 shifted from previous position = 3.2 
    6761 rotated from previous position = 0.0183 degrees 
    6762 atoms outside contour = 1633, contour level = 0.0084977 
    6763  
    6764 > view matrix models
    6765 > #9,0.67825,-0.52005,-0.51915,338.19,0.45761,-0.25385,0.85215,405.44,-0.57494,-0.81554,0.065812,370.68>
    6766 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6767 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6768 average map value = 0.006782, steps = 88 
    6769 shifted from previous position = 1.9 
    6770 rotated from previous position = 0.0472 degrees 
    6771 atoms outside contour = 1632, contour level = 0.0084977 
    6772  
    6773 > view matrix models
    6774 > #9,0.67825,-0.52005,-0.51915,339.32,0.45761,-0.25385,0.85215,403.47,-0.57494,-0.81554,0.065812,371.01>
    6775 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6776 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6777 average map value = 0.006782, steps = 84 
    6778 shifted from previous position = 2.31 
    6779 rotated from previous position = 0.00501 degrees 
    6780 atoms outside contour = 1632, contour level = 0.0084977 
    6781  
    6782 > view matrix models
    6783 > #9,0.67825,-0.52005,-0.51915,341.08,0.45761,-0.25385,0.85215,402.27,-0.57494,-0.81554,0.065812,371.34>
    6784 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6785 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6786 average map value = 0.006781, steps = 44 
    6787 shifted from previous position = 2.15 
    6788 rotated from previous position = 0.0538 degrees 
    6789 atoms outside contour = 1630, contour level = 0.0084977 
    6790  
    6791 > ui mousemode right "rotate selected models"> view matrix models
    6792 > #9,0.68238,-0.51479,-0.51898,341.04,0.43744,-0.28125,0.85414,402.55,-0.58566,-0.80987,0.033274,370.31>
    6793 > view matrix models
    6794 > #9,0.65688,-0.50421,-0.5606,339.52,0.46738,-0.31114,0.8275,402.82,-0.59166,-0.80558,0.031274,370.11>
    6795 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6796 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6797 average map value = 0.006781, steps = 104 
    6798 shifted from previous position = 2.24 
    6799 rotated from previous position = 3.61 degrees 
    6800 atoms outside contour = 1633, contour level = 0.0084977 
    6801  
    6802 > view matrix models
    6803 > #9,0.63653,-0.50347,-0.58425,338.66,0.479,-0.33565,0.81111,402.98,-0.60447,-0.79615,0.027511,369.69>
    6804 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6805 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6806 average map value = 0.006782, steps = 72 
    6807 shifted from previous position = 0.981 
    6808 rotated from previous position = 1.93 degrees 
    6809 atoms outside contour = 1632, contour level = 0.0084977 
    6810  
    6811 > view matrix models
    6812 > #9,0.54609,-0.4734,-0.69114,334.3,0.54331,-0.42784,0.72234,403.14,-0.63765,-0.76996,0.023556,368.72>
    6813 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6814 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6815 average map value = 0.006782, steps = 100 
    6816 shifted from previous position = 4.27 
    6817 rotated from previous position = 8.41 degrees 
    6818 atoms outside contour = 1630, contour level = 0.0084977 
    6819  
    6820 > view matrix models
    6821 > #9,0.53268,-0.49064,-0.68958,334.45,0.55227,-0.41589,0.72252,403.06,-0.64128,-0.76571,0.049429,369.26>
    6822 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6823 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6824 average map value = 0.006781, steps = 44 
    6825 shifted from previous position = 0.527 
    6826 rotated from previous position = 1.47 degrees 
    6827 atoms outside contour = 1633, contour level = 0.0084977 
    6828  
    6829 > ui mousemode right "translate selected models"> view matrix models
    6830 > #9,0.53268,-0.49064,-0.68958,335.38,0.55227,-0.41589,0.72252,401.67,-0.64128,-0.76571,0.049429,369.88>
    6831 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6832 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6833 average map value = 0.006781, steps = 52 
    6834 shifted from previous position = 1.78 
    6835 rotated from previous position = 0.0462 degrees 
    6836 atoms outside contour = 1632, contour level = 0.0084977 
    6837  
    6838 > view matrix models
    6839 > #9,0.53268,-0.49064,-0.68958,337.03,0.55227,-0.41589,0.72252,398.25,-0.64128,-0.76571,0.049429,371.22>
    6840 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6841 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6842 average map value = 0.006781, steps = 72 
    6843 shifted from previous position = 4 
    6844 rotated from previous position = 0.0539 degrees 
    6845 atoms outside contour = 1633, contour level = 0.0084977 
    6846  
    6847 > view matrix models
    6848 > #9,0.53268,-0.49064,-0.68958,336.5,0.55227,-0.41589,0.72252,396.14,-0.64128,-0.76571,0.049429,371.91>
    6849 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6850 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6851 average map value = 0.006781, steps = 48 
    6852 shifted from previous position = 2.28 
    6853 rotated from previous position = 0.0375 degrees 
    6854 atoms outside contour = 1633, contour level = 0.0084977 
    6855  
    6856 > view matrix models
    6857 > #9,0.53268,-0.49064,-0.68958,336.5,0.55227,-0.41589,0.72252,394.77,-0.64128,-0.76571,0.049429,372.12>
    6858 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6859 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6860 average map value = 0.006782, steps = 52 
    6861 shifted from previous position = 1.4 
    6862 rotated from previous position = 0.0123 degrees 
    6863 atoms outside contour = 1633, contour level = 0.0084977 
    6864  
    6865 > ui mousemode right "translate selected models"> ui mousemode right "rotate
    6866 > selected models"> view matrix models
    6867 > #9,0.48168,-0.52169,-0.70415,336.01,0.54192,-0.45414,0.70716,394.9,-0.6887,-0.72222,0.063968,371.16>
    6868 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6869 > (#9) to map postprocess.mrc (#1) using 2123 atoms 
    6870 average map value = 0.006782, steps = 84 
    6871 shifted from previous position = 2.18 
    6872 rotated from previous position = 4.06 degrees 
    6873 atoms outside contour = 1633, contour level = 0.0084977 
    6874  
    6875 > select #9:1-5844566 atoms, 4638 bonds, 584 residues, 1 model selected 
    6876 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6877 > (#9) to map postprocess.mrc (#1) using 4566 atoms 
    6878 average map value = 0.008702, steps = 84 
    6879 shifted from previous position = 7.03 
    6880 rotated from previous position = 12.9 degrees 
    6881 atoms outside contour = 2382, contour level = 0.0084977 
    6882  
    6883 > select clear> hide #5 models> hide #!1 models> select #9:517-584535 atoms,
    6884 > 543 bonds, 68 residues, 1 model selected 
    6885 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    6886 > (#9) to map postprocess.mrc (#1) using 535 atoms 
    6887 average map value = 0.007748, steps = 80 
    6888 shifted from previous position = 1.92 
    6889 rotated from previous position = 4.63 degrees 
    6890 atoms outside contour = 310, contour level = 0.0084977 
    6891  
    6892 > show #!1 models> show #5 models> select clear> volume #1 level 0.00753> show
    6893 > #!2 models> show #3 models> hide #!2 models> show #4 models> show #8 models>
    6894 > show #7 models> show #6 models> hide #9 models> hide #8 models> show #8
    6895 > models> hide #7 models> hide #6 models> hide #3 models> hide #4 models> hide
    6896 > #5 models> select #8:1-1781453 atoms, 1472 bonds, 178 residues, 1 model
    6897 > selected 
    6898 > fitmap sel inMap #1Fit molecule AlphaFold Q5XJY5 (#8) to map postprocess.mrc
    6899 > (#1) using 1453 atoms 
    6900 average map value = 0.008626, steps = 80 
    6901 shifted from previous position = 1.02 
    6902 rotated from previous position = 3.47 degrees 
    6903 atoms outside contour = 690, contour level = 0.0075295 
    6904  
    6905 Position of AlphaFold Q5XJY5 (#8) relative to postprocess.mrc (#1)
    6906 coordinates: 
    6907 Matrix rotation and translation 
    6908 0.15504099 0.95631904 0.24782288 253.82646300 
    6909 -0.90175689 0.03454077 0.43086129 302.50191978 
    6910 0.40348086 -0.29027715 0.86772252 330.45240550 
    6911 Axis -0.36071731 -0.07786096 -0.92941954 
    6912 Axis point 212.05516318 81.20858689 0.00000000 
    6913 Rotation angle (degrees) 88.35812850 
    6914 Shift along axis -422.24161336 
    6915  
    6916 > volume #1 level 0.01043> volume #1 level 0.009742> show #!2 models> hide #!2
    6917 > models> show #3 models> show #4 models> show #5 models> show #6 models> show
    6918 > #7 models> show #9 models> show #10 models> select clear> show #!2 models>
    6919 > volume #2 level 0.09192> volume #2 level 0.2169> hide #!2 models> ui tool
    6920 > show AlphaFoldFetching compressed Q9CRA5 UniProt info from
    6921 > https://www.uniprot.org/uniprot/Q9CRA5.xml 
    6922 > alphafold match Q9CRA5Fetching compressed AlphaFold Q9CRA5 from
    6923 > https://alphafold.ebi.ac.uk/files/AF-Q9CRA5-F1-model_v4.cif 
    6924 1 AlphaFold model found using UniProt identifier: Q9CRA5 (UniProt Q9CRA5) 
    6925 | Sequence Similarity 
    6926 --- 
    6927 AlphaFold Model| Query Sequence| Identity %| Coverage % 
    6928 Q9CRA5 | Q9CRA5 | 100.0 | 100.0   
    6929 Opened 1 AlphaFold model 
    6930 > select add #112367 atoms, 2398 bonds, 298 residues, 1 model selected 
    6931 > ui mousemode right "translate selected models"> view matrix models
    6932 > #11,1,0,0,286.27,0,1,0,282.99,0,0,1,272.4> view matrix models
    6933 > #11,1,0,0,288.58,0,1,0,364.1,0,0,1,265.21> view matrix models
    6934 > #11,1,0,0,297.99,0,1,0,368.21,0,0,1,317.05> ui mousemode right "rotate
    6935 > selected models"> view matrix models
    6936 > #11,0.99397,-0.020497,0.10769,298.11,-0.032135,0.88472,0.46502,368.63,-0.1048,-0.46568,0.87873,314.67>
    6937 > hide #3 models> hide #4 models> hide #5 models> hide #6 models> hide #7
    6938 > models> hide #8 models> hide #9 models> hide #10 models> view matrix models
    6939 > #11,0.84844,-0.32207,0.42002,296.59,-0.5206,-0.651,0.55243,360.31,0.095516,-0.68737,-0.72,312.88>
    6940 > view matrix models
    6941 > #11,0.81812,-0.34541,0.45975,296.3,-0.56853,-0.60586,0.55651,359.9,0.086316,-0.71668,-0.69204,312.78>
    6942 > view matrix models
    6943 > #11,0.58772,-0.41319,0.6956,294.19,-0.80874,-0.27569,0.51955,357.93,-0.022902,-0.86791,-0.49619,311.71>
    6944 > ui mousemode right "translate selected models"> view matrix models
    6945 > #11,0.58772,-0.41319,0.6956,310.63,-0.80874,-0.27569,0.51955,351.47,-0.022902,-0.86791,-0.49619,304.59>
    6946 > view matrix models
    6947 > #11,0.58772,-0.41319,0.6956,310.03,-0.80874,-0.27569,0.51955,346.98,-0.022902,-0.86791,-0.49619,304.94>
    6948 > select #11:57-10001954 atoms, 1985 bonds, 242 residues, 1 model selected 
    6949 > ui tool show "Fit in Map"> fitmap sel inMap #1Fit molecule AlphaFold Q9CRA5
    6950 > (#11) to map postprocess.mrc (#1) using 1954 atoms 
    6951 average map value = 0.008773, steps = 60 
    6952 shifted from previous position = 2.39 
    6953 rotated from previous position = 17.6 degrees 
    6954 atoms outside contour = 1138, contour level = 0.0097424 
    6955  
    6956 Position of AlphaFold Q9CRA5 (#11) relative to postprocess.mrc (#1)
    6957 coordinates: 
    6958 Matrix rotation and translation 
    6959 0.64865054 -0.27425736 0.70995449 310.01926151 
    6960 -0.71703282 -0.53296917 0.44923022 345.45914188 
    6961 0.25517916 -0.80045410 -0.54236227 303.67555190 
    6962 Axis -0.89159019 0.32446052 -0.31589919 
    6963 Axis point 0.00000000 279.93960156 -1.69675172 
    6964 Rotation angle (degrees) 135.50735744 
    6965 Shift along axis -260.25314202 
    6966  
    6967 > show #3 models> show #4 models> show #5 models> show #6 models> show #7
    6968 > models> show #8 models> show #9 models> show #10 models> show #!2 models>
    6969 > volume #2 level 0.2032> volume #1 level 0.01362> volume #2 level 0.1792>
    6970 > select clear> hide #3 models> hide #4 models> hide #5 models> hide #6
    6971 > models> hide #7 models> hide #8 models> hide #9 models> hide #10 models>
    6972 > volume #1 level 0.01196> volume #2 level 0.1039> volume #2 level 0.1552>
    6973 > hide #!2 models> hide #11 models> save /fs/gpfs41/lv09/fileset01/pool/pool-
    6974 > briggs/tagiltsev/warp_4becca/warpV1_erase/relion/PostProcess/job062/alphafold_copi.cxs[Errno
    6975 > 13] Permission denied: '/fs/gpfs41/lv09/fileset01/pool/pool-
    6976 > briggs/tagiltsev/warp_4becca/warpV1_erase/relion/PostProcess/job062/alphafold_copi.cxs.13524.tmp' 
    6977 > save /fs/gpfs41/lv09/fileset01/pool/pool-
    6978 > briggs/tagiltsev/warp_4becca/warpV1_erase/relion/PostProcess/copi_alphafold.cxs[Errno
    6979 > 13] Permission denied: '/fs/gpfs41/lv09/fileset01/pool/pool-
    6980 > briggs/tagiltsev/warp_4becca/warpV1_erase/relion/PostProcess/copi_alphafold.cxs.13524.tmp' 
    6981 > save /fs/pool/pool-briggs/zke/alphafold_copi_gt.cxs includeMaps true——— End
    6982 > of log from Sun Nov 5 03:35:04 2023 ———opened ChimeraX session 
    6983 > show #3 models> show #4 models> show #5 models> show #6 models> show #7
    6984 > models> show #8 models> show #9 models> show #!2 models> hide #!2 models>
    6985 > volume #1 level 0.009804> show #10 models> show #11 models> show #!2 models>
    6986 > hide #!2 models> select #9:98-196760 atoms, 769 bonds, 99 residues, 1 model
    6987 > selected 
    6988 > select #9:98-198772 atoms, 781 bonds, 101 residues, 1 model selected 
    6989 > select #9:98-12086059 atoms, 6162 bonds, 777 residues, 1 model selected 
    6990 > select #9:98-208864 atoms, 875 bonds, 111 residues, 1 model selected 
    6991 > select #9:98-207853 atoms, 864 bonds, 110 residues, 1 model selected 
    6992 > ui tool show "Fit in Map"> fitmap sel inMap #1 moveWholeMolecules falseFit
    6993 > molecule AlphaFold Q9QZE5 (#9) to map postprocess.mrc (#1) using 853 atoms 
    6994 average map value = 0.01232, steps = 64 
    6995 shifted from previous position = 6.32 
    6996 rotated from previous position = 18.5 degrees 
    6997 atoms outside contour = 344, contour level = 0.0098043 
    6998  
    6999 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    7000 > (#9) to map postprocess.mrc (#1) using 853 atoms 
    7001 average map value = 0.01232, steps = 44 
    7002 shifted from previous position = 0.0596 
    7003 rotated from previous position = 0.14 degrees 
    7004 atoms outside contour = 345, contour level = 0.0098043 
    7005  
    7006 > select #9:200-222193 atoms, 196 bonds, 23 residues, 1 model selected 
    7007 > select #9:206-222136 atoms, 137 bonds, 17 residues, 1 model selected 
    7008 > select #9:207-222128 atoms, 129 bonds, 16 residues, 1 model selected 
    7009 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q9QZE5
    7010 > (#9) to map postprocess.mrc (#1) using 128 atoms 
    7011 average map value = 0.0125, steps = 104 
    7012 shifted from previous position = 8.69 
    7013 rotated from previous position = 12 degrees 
    7014 atoms outside contour = 52, contour level = 0.0098043 
    7015  
    7016 > select #9:2078 atoms, 7 bonds, 1 residue, 1 model selected 
    7017 > ui mousemode right "translate selected atoms"> select #9:2068 atoms, 7
    7018 > bonds, 1 residue, 1 model selected 
    7019 > select #9:2059 atoms, 8 bonds, 1 residue, 1 model selected 
    7020 > select #9:2008 atoms, 7 bonds, 1 residue, 1 model selected 
    7021 > select #9:1984 atoms, 3 bonds, 1 residue, 1 model selected 
    7022 > select #9:1998 atoms, 7 bonds, 1 residue, 1 model selected 
    7023 > select #9:2008 atoms, 7 bonds, 1 residue, 1 model selected 
    7024 > select #9:20112 atoms, 12 bonds, 1 residue, 1 model selected 
    7025 > select #9:20210 atoms, 10 bonds, 1 residue, 1 model selected 
    7026 > select #9:2037 atoms, 6 bonds, 1 residue, 1 model selected 
    7027 > select #9:20210 atoms, 10 bonds, 1 residue, 1 model selected 
    7028 > 1Unknown command: 1 
    7029 > select #9:20112 atoms, 12 bonds, 1 residue, 1 model selected 
    7030 > select #9:20210 atoms, 10 bonds, 1 residue, 1 model selected 
    7031 > select #9:2037 atoms, 6 bonds, 1 residue, 1 model selected 
    7032 > select #9:20210 atoms, 10 bonds, 1 residue, 1 model selected 
    7033 > select #9:20112 atoms, 12 bonds, 1 residue, 1 model selected 
    7034 > select #9:20411 atoms, 10 bonds, 1 residue, 1 model selected 
    7035 > select #9:2037 atoms, 6 bonds, 1 residue, 1 model selected 
    7036 > select #9:2059 atoms, 8 bonds, 1 residue, 1 model selected 
    7037 > hide #3 models> hide #4 models> hide #5 models> hide #6 models> hide #7
    7038 > models> hide #11 models> hide #10 models> hide #8 models> select #9:20411
    7039 > atoms, 10 bonds, 1 residue, 1 model selected 
    7040 > select #9:2037 atoms, 6 bonds, 1 residue, 1 model selected 
    7041 > select #9:1998 atoms, 7 bonds, 1 residue, 1 model selected 
    7042 > select #9:2008 atoms, 7 bonds, 1 residue, 1 model selected 
    7043 > select #9:2008 atoms, 7 bonds, 1 residue, 1 model selected 
    7044 > select #9:20112 atoms, 12 bonds, 1 residue, 1 model selected 
    7045 > select #9:20210 atoms, 10 bonds, 1 residue, 1 model selected 
    7046 > select #9:2037 atoms, 6 bonds, 1 residue, 1 model selected 
    7047 > select #9:2059 atoms, 8 bonds, 1 residue, 1 model selected 
    7048 > select #9:20411 atoms, 10 bonds, 1 residue, 1 model selected 
    7049 > select #9:2037 atoms, 6 bonds, 1 residue, 1 model selected 
    7050 > select #9:20210 atoms, 10 bonds, 1 residue, 1 model selected 
    7051 > select #9:2037 atoms, 6 bonds, 1 residue, 1 model selected 
    7052 > select #9:20411 atoms, 10 bonds, 1 residue, 1 model selected 
    7053 > select #9:2037 atoms, 6 bonds, 1 residue, 1 model selected 
    7054 > select #9:2059 atoms, 8 bonds, 1 residue, 1 model selected 
    7055 > select #9:2068 atoms, 7 bonds, 1 residue, 1 model selected 
    7056 > select #9:2078 atoms, 7 bonds, 1 residue, 1 model selected 
    7057 > select clear> select #9/A:6057 atoms, 6 bonds, 1 residue, 1 model selected 
    7058 > select #9:584-604157 atoms, 159 bonds, 21 residues, 1 model selected 
    7059 > select #9:590-604112 atoms, 113 bonds, 15 residues, 1 model selected 
    7060 > select #9:588-604130 atoms, 131 bonds, 17 residues, 1 model selected 
    7061 > select #9:586-604143 atoms, 144 bonds, 19 residues, 1 model selected 
    7062 > select #9:585-604150 atoms, 152 bonds, 20 residues, 1 model selected 
    7063 > select #9:584-604157 atoms, 159 bonds, 21 residues, 1 model selected 
    7064 > delete sel> hide #!9 models> show #8 models> select #9:257-10004654 atoms,
    7065 > 4733 bonds, 1 pseudobond, 597 residues, 2 models selected 
    7066 > select #8\:257-1000Expected an objects specifier or a keyword 
    7067 > select #8:257-10002014 atoms, 2054 bonds, 255 residues, 1 model selected 
    7068 > ui mousemode right "translate selected atoms"> fitmap sel inMap #1
    7069 > moveWholeMolecules falseFit molecule AlphaFold Q5XJY5 (#8) to map
    7070 > postprocess.mrc (#1) using 2014 atoms 
    7071 average map value = 0.006316, steps = 60 
    7072 shifted from previous position = 7.18 
    7073 rotated from previous position = 6.19 degrees 
    7074 atoms outside contour = 1480, contour level = 0.0098043 
    7075  
    7076 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q5XJY5
    7077 > (#8) to map postprocess.mrc (#1) using 2014 atoms 
    7078 average map value = 0.006563, steps = 148 
    7079 shifted from previous position = 19.3 
    7080 rotated from previous position = 20.9 degrees 
    7081 atoms outside contour = 1472, contour level = 0.0098043 
    7082  
    7083 > select add #84014 atoms, 4083 bonds, 511 residues, 1 model selected 
    7084 > ui mousemode right "rotate selected models"> view matrix models
    7085 > #8,-0.65575,-0.45666,0.60121,239.54,0.70208,-0.076013,0.70803,346.55,-0.27763,0.88639,0.37046,305.61>
    7086 > view matrix models
    7087 > #8,-0.41192,-0.5627,0.71672,247.03,0.89918,-0.12358,0.41976,349.78,-0.14763,0.81737,0.55688,310.53>
    7088 > view matrix models
    7089 > #8,0.043275,-0.70295,0.70992,259.25,0.97747,0.17673,0.11541,348.75,-0.20659,0.68893,0.69476,310.36>
    7090 > view matrix models
    7091 > #8,-0.55786,-0.70229,0.44225,241.71,0.82871,-0.5003,0.25087,347.91,0.045081,0.50645,0.86109,318.64>
    7092 > view matrix models
    7093 > #8,-0.67786,-0.63134,0.37673,237.91,0.73318,-0.61845,0.2828,346.01,0.054444,0.4679,0.8821,319.15>
    7094 > ui mousemode right "translate selected models"> view matrix models
    7095 > #8,-0.67786,-0.63134,0.37673,251.48,0.73318,-0.61845,0.2828,366.41,0.054444,0.4679,0.8821,310.61>
    7096 > view matrix models
    7097 > #8,-0.67786,-0.63134,0.37673,254.38,0.73318,-0.61845,0.2828,374.81,0.054444,0.4679,0.8821,310.23>
    7098 > view matrix models
    7099 > #8,-0.67786,-0.63134,0.37673,264.5,0.73318,-0.61845,0.2828,373.94,0.054444,0.4679,0.8821,312.95>
    7100 > select #8:257-10002014 atoms, 2054 bonds, 255 residues, 1 model selected 
    7101 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q5XJY5
    7102 > (#8) to map postprocess.mrc (#1) using 2014 atoms 
    7103 average map value = 0.007698, steps = 100 
    7104 shifted from previous position = 18.4 
    7105 rotated from previous position = 35.6 degrees 
    7106 atoms outside contour = 1372, contour level = 0.0098043 
    7107  
    7108 > view matrix models
    7109 > #8,-0.67786,-0.63134,0.37673,241.27,0.73318,-0.61845,0.2828,379.02,0.054444,0.4679,0.8821,275.08>
    7110 > view matrix models
    7111 > #8,-0.67786,-0.63134,0.37673,236.54,0.73318,-0.61845,0.2828,370.7,0.054444,0.4679,0.8821,277.28>
    7112 > view matrix models
    7113 > #8,-0.67786,-0.63134,0.37673,237.48,0.73318,-0.61845,0.2828,372,0.054444,0.4679,0.8821,282.61>
    7114 > view matrix models
    7115 > #8,-0.67786,-0.63134,0.37673,228.93,0.73318,-0.61845,0.2828,361.57,0.054444,0.4679,0.8821,272.74>
    7116 > view matrix models
    7117 > #8,-0.67786,-0.63134,0.37673,224.08,0.73318,-0.61845,0.2828,375.92,0.054444,0.4679,0.8821,277.88>
    7118 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q5XJY5
    7119 > (#8) to map postprocess.mrc (#1) using 2014 atoms 
    7120 average map value = 0.006786, steps = 148 
    7121 shifted from previous position = 20.6 
    7122 rotated from previous position = 27.6 degrees 
    7123 atoms outside contour = 1529, contour level = 0.0098043 
    7124  
    7125 > view matrix models
    7126 > #8,-0.67786,-0.63134,0.37673,220.78,0.73318,-0.61845,0.2828,377.23,0.054444,0.4679,0.8821,296.19>
    7127 > fitmap sel inMap #1 moveWholeMolecules falseFit molecule AlphaFold Q5XJY5
    7128 > (#8) to map postprocess.mrc (#1) using 2014 atoms 
    7129 average map value = 0.006638, steps = 104 
    7130 shifted from previous position = 13.8 
    7131 rotated from previous position = 12.7 degrees 
    7132 atoms outside contour = 1535, contour level = 0.0098043 
    7133  
    7134 > view matrix models
    7135 > #8,-0.67786,-0.63134,0.37673,220.41,0.73318,-0.61845,0.2828,367.14,0.054444,0.4679,0.8821,309.5>
    7136 > ui mousemode right "rotate selected models"> view matrix models
    7137 > #8,-0.60234,-0.16822,0.78031,220.15,-0.17007,-0.92805,-0.33135,351.59,0.77991,-0.33229,0.5304,325.75>
    7138 > view matrix models
    7139 > #8,-0.56665,-0.21292,0.79597,220.93,-0.31574,-0.83618,-0.44845,348.69,0.76106,-0.50543,0.4066,326.01>
    7140 > view matrix models
    7141 > #8,-0.80177,-0.30588,0.51343,217.02,0.098336,-0.91491,-0.3915,356.65,0.58949,-0.26341,0.76362,321.78>
    7142 > open 5nzr5nzr title: 
    7143 The structure of the COPI coat leaf [more info...] 
    7144  
    7145 | Chain information for 5nzr #12 
    7146 --- 
    7147 Chain | Description | UniProt 
    7148 A | Coatomer subunit alpha | COPA_MOUSE 1-1224 
    7149 B | Coatomer subunit beta | COPB_MOUSE 16-968 
    7150 C | Coatomer subunit beta' | COPB2_MOUSE 1-905 
    7151 D | Coatomer subunit delta | COPD_MOUSE 1-511 
    7152 F M R | ADP-ribosylation factor 1 | ARF1_YEAST 1-181 
    7153 G K | Coatomer subunit gamma-1 | COPG1_MOUSE 1-874 
    7154 L Z | Coatomer subunit zeta-1 | COPZ1_MOUSE 1-177 
    7155  
    7156 
    7157 > hide #8 models
    7158 
    7159 > select add #12
    7160 
    7161 20984 atoms, 21006 bonds, 7 pseudobonds, 5001 residues, 3 models selected 
    7162 
    7163 > rainbow sel & #!12
    7164 
    7165 > hide sel & #!12 atoms
    7166 
    7167 > show sel & #!12 cartoons
    7168 
    7169 > view matrix models
    7170 > #8,-0.64994,0.65231,0.38997,-81.046,-0.44881,-0.74353,0.49572,377.96,0.61331,0.14717,0.77601,199.42,#12,0.52179,-0.81339,-0.25717,178.56,0.84178,0.44205,0.30983,-62.075,-0.13833,-0.37814,0.91535,69.76
    7171 
    7172 > ui mousemode right "translate selected models"
    7173 
    7174 > view matrix models
    7175 > #8,-0.64994,0.65231,0.38997,141.42,-0.44881,-0.74353,0.49572,557.2,0.61331,0.14717,0.77601,304.75,#12,0.52179,-0.81339,-0.25717,401.02,0.84178,0.44205,0.30983,117.16,-0.13833,-0.37814,0.91535,175.1
    7176 
    7177 > ui mousemode right "rotate selected models"
    7178 
    7179 > view matrix models
    7180 > #8,-0.38397,-0.58767,-0.71219,403.83,0.75014,0.2512,-0.61171,192.35,0.53839,-0.76911,0.34438,528.33,#12,0.12195,0.77873,-0.61539,297.65,-0.99234,0.083426,-0.091086,407.27,-0.019592,0.62179,0.78294,58.888
    7181 
    7182 > view matrix models
    7183 > #8,0.44702,-0.57148,-0.68817,450.81,0.39074,0.81679,-0.42447,20.948,0.80467,-0.079146,0.58843,362.7,#12,-0.53693,0.83623,-0.11145,304.96,-0.78106,-0.54268,-0.30895,483.41,-0.31883,-0.078831,0.94453,156.08
    7184 
    7185 > view matrix models
    7186 > #8,0.54098,-0.32184,-0.77702,369.6,0.15438,0.94619,-0.28442,-15.762,0.82675,0.033909,0.56155,326.3,#12,-0.73424,0.65186,-0.18968,357.49,-0.55923,-0.73914,-0.37542,490.02,-0.38492,-0.16957,0.90724,178.39
    7187 
    7188 > view matrix models
    7189 > #8,0.4776,-0.51082,-0.71482,430.93,0.33258,0.85817,-0.39106,8.8775,0.8132,-0.050961,0.57975,353.57,#12,-0.59368,0.79417,-0.12976,318.28,-0.72993,-0.59934,-0.32862,486.79,-0.33875,-0.10038,0.93551,161.86
    7190 
    7191 > ui mousemode right "translate selected models"
    7192 
    7193 > view matrix models
    7194 > #8,0.4776,-0.51082,-0.71482,482.75,0.33258,0.85817,-0.39106,39.498,0.8132,-0.050961,0.57975,377.3,#12,-0.59368,0.79417,-0.12976,370.1,-0.72993,-0.59934,-0.32862,517.41,-0.33875,-0.10038,0.93551,185.59
    7195 
    7196 > view matrix models
    7197 > #8,0.4776,-0.51082,-0.71482,473.46,0.33258,0.85817,-0.39106,77.071,0.8132,-0.050961,0.57975,460.12,#12,-0.59368,0.79417,-0.12976,360.82,-0.72993,-0.59934,-0.32862,554.98,-0.33875,-0.10038,0.93551,268.42
    7198 
    7199 > view matrix models
    7200 > #8,0.4776,-0.51082,-0.71482,415.29,0.33258,0.85817,-0.39106,47.406,0.8132,-0.050961,0.57975,495.54,#12,-0.59368,0.79417,-0.12976,302.64,-0.72993,-0.59934,-0.32862,525.32,-0.33875,-0.10038,0.93551,303.83
    7201 
    7202 > view matrix models
    7203 > #8,0.4776,-0.51082,-0.71482,415.6,0.33258,0.85817,-0.39106,48.007,0.8132,-0.050961,0.57975,495.11,#12,-0.59368,0.79417,-0.12976,302.95,-0.72993,-0.59934,-0.32862,525.92,-0.33875,-0.10038,0.93551,303.41
    7204 
    7205 > view matrix models
    7206 > #8,0.4776,-0.51082,-0.71482,419.97,0.33258,0.85817,-0.39106,44.047,0.8132,-0.050961,0.57975,508.07,#12,-0.59368,0.79417,-0.12976,307.33,-0.72993,-0.59934,-0.32862,521.96,-0.33875,-0.10038,0.93551,316.36
    7207 
    7208 > ui mousemode right "rotate selected models"
    7209 
    7210 > view matrix models
    7211 > #8,0.29304,-0.92622,-0.23718,592.8,0.49296,0.35892,-0.79257,157.89,0.81922,0.11534,0.56176,455.55,#12,-0.073413,0.96907,0.2356,187.3,-0.91195,0.030392,-0.40917,476.63,-0.40368,-0.24489,0.88152,346.85
    7212 
    7213 > view matrix models
    7214 > #8,0.39675,-0.37422,-0.83818,358.81,0.45925,0.87155,-0.17173,73.623,0.79478,-0.3168,0.51765,580.67,#12,-0.63398,0.70954,-0.3076,342.32,-0.72297,-0.68499,-0.08998,503.78,-0.27455,0.16534,0.94725,276.48
    7215 
    7216 > view matrix models
    7217 > #8,0.50375,-0.66794,-0.5478,489.38,0.5286,0.73991,-0.41608,88.71,0.68324,-0.079968,0.7258,526.68,#12,-0.48084,0.87511,0.054582,264.06,-0.86376,-0.46207,-0.20102,505.65,-0.15069,-0.1438,0.97807,295.95
    7218 
    7219 > view matrix models
    7220 > #8,0.1025,-0.67908,-0.72687,447.72,0.73567,0.54358,-0.4041,162.25,0.66953,-0.49332,0.5553,631.62,#12,-0.24766,0.91595,-0.31575,276.4,-0.96359,-0.26678,-0.018091,472.34,-0.10081,0.29977,0.94867,241.32
    7221 
    7222 > view matrix models
    7223 > #8,0.685,-0.70374,-0.18846,553.89,0.65744,0.70857,-0.25632,124.94,0.31392,0.051678,0.94804,491.25,#12,-0.43071,0.78501,0.44526,224.12,-0.87545,-0.48328,0.0051794,485.63,0.21925,-0.38757,0.89539,293.78
    7224 
    7225 > view matrix models
    7226 > #8,0.75433,-0.6511,-0.083978,554.39,0.60264,0.73751,-0.30482,107.09,0.2604,0.17933,0.9487,449.23,#12,-0.44876,0.70275,0.55205,223.51,-0.86526,-0.49615,-0.071779,494.92,0.22346,-0.50988,0.83072,315.27
    7227 
    7228 > fitmap sel inMap #1
    7229 
    7230 Fit molecules AlphaFold Q5XJY5 (#8), 5nzr (#12) to map postprocess.mrc (#1)
    7231 using 20984 atoms 
    7232 average map value = 0.00986, steps = 348 
    7233 shifted from previous position = 33.8 
    7234 rotated from previous position = 35.7 degrees 
    7235 atoms outside contour = 11489, contour level = 0.0098043 
    7236  
    7237 Position of AlphaFold Q5XJY5 (#8) relative to postprocess.mrc (#1)
    7238 coordinates: 
    7239 Matrix rotation and translation 
    7240 0.49299499 -0.60059429 -0.62947792 453.02472673 
    7241 0.62412801 0.74820379 -0.22506737 108.04034281 
    7242 0.60615194 -0.28191772 0.74370843 551.83093680 
    7243 Axis -0.03265990 -0.70985575 0.70358947 
    7244 Axis point -190.29422483 0.00000000 888.35117527 
    7245 Rotation angle (degrees) 60.49802227 
    7246 Shift along axis 296.77363624 
    7247  
    7248 Position of 5nzr (#12) relative to postprocess.mrc (#1) coordinates: 
    7249 Matrix rotation and translation 
    7250 -0.53474921 0.84440971 -0.03186735 278.17462040 
    7251 -0.84482079 -0.53504839 -0.00102956 482.54311095 
    7252 -0.01791995 0.02637164 0.99949158 224.70041209 
    7253 Axis 0.01621843 -0.00825529 -0.99983439 
    7254 Axis point 273.18809601 162.79475561 0.00000000 
    7255 Rotation angle (degrees) 122.35428873 
    7256 Shift along axis -224.13517875 
    7257  
    7258 
    7259 > select clear
    7260 
    7261 > show #8 models
    7262 
    7263 > hide #8 models
    7264 
    7265 > show #!9 models
    7266 
    7267 > hide #!9 models
    7268 
    7269 > show #10 models
    7270 
    7271 > hide #10 models
    7272 
    7273 > show #6 models
    7274 
    7275 > hide #6 models
    7276 
    7277 > show #5 models
    7278 
    7279 > hide #!12 models
    7280 
    7281 > show #!12 models
    7282 
    7283 > hide #!12 models
    7284 
    7285 > select #5:257-1000
    7286 
    7287 5433 atoms, 5510 bonds, 697 residues, 1 model selected 
    7288 
    7289 > select #5:50-100
    7290 
    7291 415 atoms, 424 bonds, 51 residues, 1 model selected 
    7292 
    7293 > select #5:678-1000
    7294 
    7295 2123 atoms, 2157 bonds, 276 residues, 1 model selected 
    7296 
    7297 > select #5:673-1000
    7298 
    7299 2166 atoms, 2201 bonds, 281 residues, 1 model selected 
    7300 
    7301 > fitmap sel inMap #1 moveWholeMolecules false
    7302 
    7303 Fit molecule bcop Q9JIF7 (#5) to map postprocess.mrc (#1) using 2166 atoms 
    7304 average map value = 0.006375, steps = 144 
    7305 shifted from previous position = 6.2 
    7306 rotated from previous position = 29 degrees 
    7307 atoms outside contour = 1554, contour level = 0.0098043 
    7308  
    7309 
    7310 > undo
    7311 
    7312 > ui mousemode right "translate selected atoms"
    7313 
    7314 > fitmap sel inMap #1 moveWholeMolecules false
    7315 
    7316 Fit molecule bcop Q9JIF7 (#5) to map postprocess.mrc (#1) using 2123 atoms 
    7317 average map value = 0.007053, steps = 96 
    7318 shifted from previous position = 18.7 
    7319 rotated from previous position = 20.8 degrees 
    7320 atoms outside contour = 1515, contour level = 0.0098043 
    7321  
    7322 
    7323 > fitmap sel inMap #1 moveWholeMolecules false
    7324 
    7325 Fit molecule bcop Q9JIF7 (#5) to map postprocess.mrc (#1) using 2123 atoms 
    7326 average map value = 0.008288, steps = 120 
    7327 shifted from previous position = 5.52 
    7328 rotated from previous position = 36.8 degrees 
    7329 atoms outside contour = 1297, contour level = 0.0098043 
    7330  
    7331 
    7332 > show #!12 models
    7333 
    7334 > volume #1 level 0.007653
    7335 
    7336 > hide #!12 models
    7337 
    7338 > show #4 models
    7339 
    7340 > show #3 models
    7341 
    7342 > show #6 models
    7343 
    7344 > show #7 models
    7345 
    7346 > show #8 models
    7347 
    7348 > show #!9 models
    7349 
    7350 > show #10 models
    7351 
    7352 > show #11 models
    7353 
    7354 > select clear
    7355 
    7356 [Repeated 2 time(s)]Drag select of 160 residues 
    7357 
    7358 > select add #8
    7359 
    7360 4014 atoms, 4083 bonds, 511 residues, 1 model selected 
    7361 
    7362 > ui mousemode right "move picked models"
    7363 
    7364 > ui mousemode right "rotate selected models"
    7365 
    7366 > view matrix models
    7367 > #8,0.52203,0.85231,0.032475,68.046,-0.46112,0.25,0.85139,238.43,0.71753,-0.45943,0.52352,599.04
    7368 
    7369 > view matrix models
    7370 > #8,0.52016,0.85303,0.042083,68.629,-0.48056,0.25159,0.8401,234.03,0.70604,-0.45721,0.5408,598.69
    7371 
    7372 > view matrix models
    7373 > #8,0.051357,0.99444,0.091954,-34.655,-0.5072,-0.053346,0.86018,329.69,0.8603,-0.090815,0.50164,498.72
    7374 
    7375 > view matrix models
    7376 > #8,-0.30688,0.94053,0.14568,-60.294,-0.90559,-0.33565,0.25931,298.59,0.29279,-0.05235,0.95474,459.54
    7377 
    7378 > view matrix models
    7379 > #8,-0.31349,0.94827,-0.050019,-85.39,-0.91245,-0.28622,0.29243,285.6,0.26299,0.13731,0.95498,395.14
    7380 
    7381 > view matrix models
    7382 > #8,-0.39059,0.91742,-0.076076,-88.957,-0.91913,-0.39326,-0.023448,283.68,-0.051429,0.060765,0.99683,381.36
    7383 
    7384 > view matrix models
    7385 > #8,-0.36375,0.9173,-0.16202,-94.81,-0.92881,-0.37037,-0.011636,276.39,-0.070681,0.14625,0.98672,350.41
    7386 
    7387 > ui mousemode right "translate selected models"
    7388 
    7389 > view matrix models
    7390 > #8,-0.36375,0.9173,-0.16202,-96.715,-0.92881,-0.37037,-0.011636,304.42,-0.070681,0.14625,0.98672,364.98
    7391 
    7392 > ui mousemode right "rotate selected models"
    7393 
    7394 > view matrix models
    7395 > #8,0.13102,0.98728,0.090013,-23.655,-0.95349,0.10063,0.28411,183.99,0.27144,-0.12305,0.95456,493.69
    7396 
    7397 > ui mousemode right "translate selected models"
    7398 
    7399 > view matrix models
    7400 > #8,0.13102,0.98728,0.090013,-36.779,-0.95349,0.10063,0.28411,181.38,0.27144,-0.12305,0.95456,500.49
    7401 
    7402 > select #8:673-1000
    7403 
    7404 Nothing selected 
    7405 
    7406 > select #8:1-255
    7407 
    7408 1991 atoms, 2019 bonds, 255 residues, 1 model selected 
    7409 
    7410 > ui tool show "Fit in Map"
    7411 
    7412 > fitmap sel inMap #1
    7413 
    7414 Fit molecule AlphaFold Q5XJY5 (#8) to map postprocess.mrc (#1) using 1991
    7415 atoms 
    7416 average map value = 0.006643, steps = 256 
    7417 shifted from previous position = 15.1 
    7418 rotated from previous position = 47 degrees 
    7419 atoms outside contour = 1304, contour level = 0.0076533 
    7420  
    7421 Position of AlphaFold Q5XJY5 (#8) relative to postprocess.mrc (#1)
    7422 coordinates: 
    7423 Matrix rotation and translation 
    7424 -0.62548770 0.77964233 0.03038068 -69.32003114 
    7425 -0.77483337 -0.62526057 0.09317979 432.54139912 
    7426 0.09164275 0.03474284 0.99518569 432.15915881 
    7427 Axis -0.03753707 -0.03935179 -0.99852011 
    7428 Axis point 56.58688874 228.36184294 0.00000000 
    7429 Rotation angle (degrees) 128.88661905 
    7430 Shift along axis -445.93881773 
    7431  
    7432 
    7433 > view matrix models
    7434 > #8,-0.62549,0.77964,0.030381,-56.649,-0.77483,-0.62526,0.09318,422.08,0.091643,0.034743,0.99519,440.99
    7435 
    7436 > ui mousemode right "rotate selected models"
    7437 
    7438 > view matrix models
    7439 > #8,0.22073,0.97526,0.012319,-5.7316,-0.85987,0.18862,0.47439,193.79,0.46033,-0.1153,0.88023,526.17
    7440 
    7441 > view matrix models
    7442 > #8,0.15542,0.98522,-0.072084,-27.163,-0.86472,0.17096,0.47226,198.51,0.4776,-0.011065,0.87851,495.15
    7443 
    7444 > view matrix models
    7445 > #8,0.26671,0.96245,0.050607,8.856,-0.87241,0.21877,0.43708,178.34,0.4096,-0.16072,0.898,535.69
    7446 
    7447 > ui mousemode right "translate selected models"
    7448 
    7449 > view matrix models
    7450 > #8,0.26671,0.96245,0.050607,7.313,-0.87241,0.21877,0.43708,169.87,0.4096,-0.16072,0.898,525
    7451 
    7452 > view matrix models
    7453 > #8,0.26671,0.96245,0.050607,-10.046,-0.87241,0.21877,0.43708,167.9,0.4096,-0.16072,0.898,531.38
    7454 
    7455 > view matrix models
    7456 > #8,0.26671,0.96245,0.050607,-11.003,-0.87241,0.21877,0.43708,173.12,0.4096,-0.16072,0.898,531.71
    7457 
    7458 > ui mousemode right "move picked models"
    7459 
    7460 > ui mousemode right "rotate selected models"
    7461 
    7462 [Repeated 1 time(s)]
    7463 
    7464 > view matrix models
    7465 > #8,-0.10602,0.99339,-0.044085,-82.1,-0.98768,-0.10007,0.12027,223.73,0.11506,0.056293,0.99176,432.96
    7466 
    7467 > view matrix models
    7468 > #8,0.052591,0.99338,-0.10211,-66.953,-0.99323,0.062639,0.097836,168.7,0.10358,0.096275,0.98995,418.47
    7469 
    7470 > ui mousemode right "translate selected models"
    7471 
    7472 > view matrix models
    7473 > #8,0.052591,0.99338,-0.10211,-66.631,-0.99323,0.062639,0.097836,178.27,0.10358,0.096275,0.98995,414.29
    7474 
    7475 > view matrix models
    7476 > #8,0.052591,0.99338,-0.10211,-68.517,-0.99323,0.062639,0.097836,176.92,0.10358,0.096275,0.98995,415.64
    7477 
    7478 > ui mousemode right "rotate selected models"
    7479 
    7480 > view matrix models
    7481 > #8,-0.030369,0.96092,-0.27516,-88.694,-0.97222,0.03552,0.23135,203.23,0.23208,0.27454,0.93315,370.08
    7482 
    7483 > view matrix models
    7484 > #8,0.030946,0.98758,-0.15403,-75.383,-0.98929,0.052261,0.13632,185.03,0.14268,0.14817,0.97862,403.19
    7485 
    7486 > view matrix models
    7487 > #8,0.040371,0.9904,-0.13218,-72.571,-0.99117,0.056413,0.11997,181.64,0.12627,0.12617,0.98394,408.55
    7488 
    7489 > view matrix models
    7490 > #8,0.30426,0.95155,0.044526,-4.6598,-0.92561,0.28428,0.24988,132.46,0.22511,-0.11724,0.96725,497.63
    7491 
    7492 > fitmap sel inMap #1
    7493 
    7494 Fit molecule AlphaFold Q5XJY5 (#8) to map postprocess.mrc (#1) using 1991
    7495 atoms 
    7496 average map value = 0.006936, steps = 372 
    7497 shifted from previous position = 4.52 
    7498 rotated from previous position = 23.4 degrees 
    7499 atoms outside contour = 1277, contour level = 0.0076533 
    7500  
    7501 Position of AlphaFold Q5XJY5 (#8) relative to postprocess.mrc (#1)
    7502 coordinates: 
    7503 Matrix rotation and translation 
    7504 -0.04305036 0.99254206 0.11404797 -52.98885446 
    7505 -0.90935144 -0.08620824 0.40699890 271.42760552 
    7506 0.41379540 -0.08618823 0.90628084 502.96547353 
    7507 Axis -0.24814055 -0.15081394 -0.95691244 
    7508 Axis point -0.77179557 179.84860224 0.00000000 
    7509 Rotation angle (degrees) 96.40115017 
    7510 Shift along axis -509.08030191 
    7511  
    7512 
    7513 > select #8:255-1000
    7514 
    7515 2027 atoms, 2067 bonds, 257 residues, 1 model selected 
    7516 
    7517 > delete sel
    7518 
    7519 > select #8:180-1000
    7520 
    7521 525 atoms, 533 bonds, 75 residues, 1 model selected 
    7522 
    7523 > select up
    7524 
    7525 556 atoms, 564 bonds, 79 residues, 1 model selected 
    7526 
    7527 > select down
    7528 
    7529 525 atoms, 533 bonds, 75 residues, 1 model selected 
    7530 
    7531 > delete sel
    7532 
    7533 > save /fs/gpfs41/lv09/fileset01/pool/pool-
    7534 > briggs/tagiltsev/warp_4becca/alphafold_copi_gt2.cxs
    7535 
    7536 > save /fs/gpfs41/lv09/fileset01/pool/pool-
    7537 > briggs/tagiltsev/warp_4becca/alphafold_copi_gt2.cxs includeMaps true
    7538 
    7539 > select add #3
    7540 
    7541 9810 atoms, 10032 bonds, 1233 residues, 1 model selected 
    7542 
    7543 > color #3 blue
    7544 
    7545 > select subtract #3
    7546 
    7547 Nothing selected 
    7548 
    7549 > select add #4
    7550 
    7551 7214 atoms, 7373 bonds, 905 residues, 1 model selected 
    7552 
    7553 > color #4 cyan
    7554 
    7555 > select clear
    7556 
    7557 > select add #5
    7558 
    7559 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    7560 
    7561 > color #5 #005500ff
    7562 
    7563 > select subtract #5
    7564 
    7565 Nothing selected 
    7566 
    7567 > select add #6
    7568 
    7569 1457 atoms, 1483 bonds, 181 residues, 1 model selected 
    7570 
    7571 > color #6 #ff557fff
    7572 
    7573 > select add #7
    7574 
    7575 2914 atoms, 2966 bonds, 362 residues, 2 models selected 
    7576 
    7577 > select subtract #6
    7578 
    7579 1457 atoms, 1483 bonds, 181 residues, 1 model selected 
    7580 
    7581 > color #7 #ffaaffff
    7582 
    7583 > select clear
    7584 
    7585 > color #7 #ff557fff
    7586 
    7587 > select add #8
    7588 
    7589 1462 atoms, 1481 bonds, 179 residues, 1 model selected 
    7590 
    7591 > color #8 #aa5500ff
    7592 
    7593 > select subtract #8
    7594 
    7595 Nothing selected 
    7596 
    7597 > select add #9
    7598 
    7599 6673 atoms, 6786 bonds, 1 pseudobond, 853 residues, 2 models selected 
    7600 
    7601 > select add #8
    7602 
    7603 8135 atoms, 8267 bonds, 1 pseudobond, 1032 residues, 3 models selected 
    7604 
    7605 > select subtract #9
    7606 
    7607 1462 atoms, 1481 bonds, 179 residues, 1 model selected 
    7608 
    7609 > select subtract #8
    7610 
    7611 Nothing selected 
    7612 
    7613 > select add #9
    7614 
    7615 6673 atoms, 6786 bonds, 1 pseudobond, 853 residues, 2 models selected 
    7616 
    7617 > select add #8
    7618 
    7619 8135 atoms, 8267 bonds, 1 pseudobond, 1032 residues, 3 models selected 
    7620 
    7621 > select subtract #8
    7622 
    7623 6673 atoms, 6786 bonds, 1 pseudobond, 853 residues, 2 models selected 
    7624 
    7625 > color #9 #55ff00ff
    7626 
    7627 > select subtract #9
    7628 
    7629 Nothing selected 
    7630 
    7631 > select add #10
    7632 
    7633 1420 atoms, 1441 bonds, 177 residues, 1 model selected 
    7634 
    7635 > color #10 yellow
    7636 
    7637 > color #10 #ffff7fff
    7638 
    7639 > color #10 yellow
    7640 
    7641 > color #9 lime
    7642 
    7643 > select subtract #10
    7644 
    7645 Nothing selected 
    7646 
    7647 > select add #11
    7648 
    7649 2367 atoms, 2398 bonds, 298 residues, 1 model selected 
    7650 
    7651 > color #11 #aa00ffff
    7652 
    7653 > show #!2 models
    7654 
    7655 > hide #!2 models
    7656 
    7657 > select clear
    7658 
    7659 > close #12
    7660 
    7661 > save /fs/gpfs41/lv09/fileset01/pool/pool-
    7662 > briggs/tagiltsev/warp_4becca/alphafold_copi_gt3.cxs includeMaps true
    7663 
    7664 > ui tool show AlphaFold
    7665 
    7666 > alphafold match P84078
    7667 
    7668 1 AlphaFold model found using UniProt identifier: P84078 (UniProt P84078) 
    7669 Sequence Similarity 
    7670 --- 
    7671 AlphaFold Model| Query Sequence| Identity %| Coverage % 
    7672 P84078 | P84078 | 100.0 | 100.0   
    7673 Opened 1 AlphaFold model 
    7674 > select add #121457 atoms, 1483 bonds, 181 residues, 1 model selected 
    7675 > view matrix models
    7676 > #12,0.99732,0.03037,-0.066609,0.14664,-0.041627,0.98373,-0.17474,1.1913,0.060218,0.17704,0.98236,-1.382>
    7677 > ui mousemode right "translate selected models"> view matrix models
    7678 > #12,0.99732,0.03037,-0.066609,192.14,-0.041627,0.98373,-0.17474,369.59,0.060218,0.17704,0.98236,287.78>
    7679 > view matrix models
    7680 > #12,0.99732,0.03037,-0.066609,244.52,-0.041627,0.98373,-0.17474,330.85,0.060218,0.17704,0.98236,312>
    7681 > view matrix models
    7682 > #12,0.99732,0.03037,-0.066609,244.99,-0.041627,0.98373,-0.17474,337.04,0.060218,0.17704,0.98236,281.29>
    7683 > color #12 #ff5500ff> color #12 #ff557fff> ui mousemode right "rotate
    7684 > selected models"> view matrix models
    7685 > #12,0.96921,-0.057544,-0.23943,246.84,-0.16396,0.57464,-0.80181,344.51,0.18372,0.81638,0.54751,278.51>
    7686 > view matrix models
    7687 > #12,-0.66037,0.0084873,-0.7509,246.84,0.10956,0.99033,-0.085153,336.65,0.74291,-0.1385,-0.65491,295.68>
    7688 > view matrix models
    7689 > #12,-0.81274,0.36614,-0.45321,241.48,0.50848,0.8255,-0.24496,339.8,0.28444,-0.42953,-0.85709,298.83>
    7690 > view matrix models
    7691 > #12,-0.711,0.49496,-0.49949,240.78,0.70072,0.55818,-0.44432,343.79,0.058885,-0.66592,-0.7437,299.87>
    7692 > view matrix models
    7693 > #12,-0.69871,0.42186,-0.57778,241.96,0.65547,0.70109,-0.28076,341.39,0.28664,-0.57489,-0.76638,299.57>
    7694 > ui mousemode right "translate selected models"> view matrix models
    7695 > #12,-0.69871,0.42186,-0.57778,246.79,0.65547,0.70109,-0.28076,352.02,0.28664,-0.57489,-0.76638,288.94>
    7696 > ui mousemode right "rotate selected models"> view matrix models
    7697 > #12,-0.59293,0.10513,-0.79836,251.22,0.64323,0.6583,-0.39103,353.09,0.48445,-0.74538,-0.45795,288.83>
    7698 > view matrix models
    7699 > #12,-0.68781,0.25488,-0.67967,248.96,0.69867,-0.021515,-0.71512,361.36,-0.19689,-0.96673,-0.16328,287.83>
    7700 > view matrix models
    7701 > #12,-0.70244,0.38024,-0.60167,247.31,0.48017,-0.37083,-0.79494,364.65,-0.52538,-0.84729,0.077904,284.68>
    7702 > view matrix models
    7703 > #12,-0.76601,0.36378,-0.53,246.9,0.54444,-0.071237,-0.83577,362.32,-0.34179,-0.92876,-0.14349,287.13>
    7704 > ui mousemode right "rotate selected models"> view matrix models
    7705 > #12,-0.84687,0.36676,-0.38509,245.82,0.45782,0.13437,-0.87883,360.6,-0.27058,-0.92056,-0.28171,288.05>
    7706 > view matrix models
    7707 > #12,-0.76349,0.20858,-0.6112,248.81,0.6457,0.26411,-0.71646,358.71,0.011989,-0.94167,-0.33633,289.05>
    7708 > ui mousemode right "translate selected models"> fitmap sel inMap #1Fit
    7709 > molecule AlphaFold P84078 (#12) to map postprocess.mrc (#1) using 1457 atoms 
    7710 average map value = 0.006393, steps = 76 
    7711 shifted from previous position = 8.87 
    7712 rotated from previous position = 15.9 degrees 
    7713 atoms outside contour = 1045, contour level = 0.0076533 
    7714  
    7715 Position of AlphaFold P84078 (#12) relative to postprocess.mrc (#1)
    7716 coordinates: 
    7717 Matrix rotation and translation 
    7718 -0.74110472 0.25780732 -0.61991868 250.25747317 
    7719 0.64078173 -0.00400708 -0.76771265 351.24260378 
    7720 -0.20040600 -0.96618804 -0.16222856 290.85088224 
    7721 Axis -0.32985322 -0.69720285 0.63647862 
    7722 Axis point -0.08358810 0.00000000 328.20413989 
    7723 Rotation angle (degrees) 162.49109040 
    7724 Shift along axis -142.31520995 
    7725  
    7726 > ui mousemode right "rotate selected models"> view matrix models
    7727 > #12,-0.86938,0.31454,-0.3811,248.02,0.49119,0.46609,-0.73586,346.57,-0.053833,-0.82694,-0.55971,292.37>
    7728 > view matrix models
    7729 > #12,-0.79921,0.37642,-0.46858,248.13,0.59483,0.38348,-0.70648,347.29,-0.086243,-0.84336,-0.53039,292.28>
    7730 > ui mousemode right "translate selected models"> view matrix models
    7731 > #12,-0.79921,0.37642,-0.46858,247.25,0.59483,0.38348,-0.70648,350.41,-0.086243,-0.84336,-0.53039,291.7>
    7732 > view matrix models
    7733 > #12,-0.79921,0.37642,-0.46858,244.11,0.59483,0.38348,-0.70648,350.21,-0.086243,-0.84336,-0.53039,292.13>
    7734 > ui mousemode right "rotate selected models"> view matrix models
    7735 > #12,-0.95386,0.24463,-0.17409,243.16,0.25188,0.33633,-0.90743,351.35,-0.16343,-0.90941,-0.38243,291.66>
    7736 > view matrix models
    7737 > #12,-0.79001,-0.13282,-0.59854,249.53,0.55952,0.24291,-0.79242,351.96,0.25064,-0.96091,-0.11759,291.11>
    7738 > view matrix models
    7739 > #12,-0.67783,0.13357,-0.72298,248.11,0.73388,0.06354,-0.67631,353.12,-0.044396,-0.989,-0.14109,291.03>
    7740 > select clear> save /fs/gpfs41/lv09/fileset01/pool/pool-
    7741 > briggs/tagiltsev/warp_4becca/alphafold_copi_gt4.cxs> save
    7742 > /fs/gpfs41/lv09/fileset01/pool/pool-
    7743 > briggs/tagiltsev/warp_4becca/alphafold_copi_gt4.cxs includeMaps true> ui
    7744 > tool show "Color Zone"> select add #39810 atoms, 10032 bonds, 1233 residues,
    7745 > 1 model selected 
    7746 > select add #417024 atoms, 17405 bonds, 2138 residues, 2 models selected 
    7747 > select add #524525 atoms, 25024 bonds, 3091 residues, 3 models selected 
    7748 > select add #625982 atoms, 26507 bonds, 3272 residues, 4 models selected 
    7749 > select add #727439 atoms, 27990 bonds, 3453 residues, 5 models selected 
    7750 > select add #934112 atoms, 34776 bonds, 1 pseudobond, 4306 residues, 7 models
    7751 > selected 
    7752 > select add #1136479 atoms, 37174 bonds, 1 pseudobond, 4604 residues, 8
    7753 > models selected 
    7754 > select add #1237936 atoms, 38657 bonds, 1 pseudobond, 4785 residues, 9
    7755 > models selected 
    7756 > select add #839398 atoms, 40138 bonds, 1 pseudobond, 4964 residues, 10
    7757 > models selected 
    7758 > select add #1040818 atoms, 41579 bonds, 1 pseudobond, 5141 residues, 11
    7759 > models selected 
    7760 > color zone #1 near sel distance 5> hide #3 models> hide #4 models> hide #5
    7761 > models> hide #6 models> hide #7 models> hide #8 models> hide #!9 models>
    7762 > hide #10 models> hide #11 models> hide #12 models> color zone #1 near sel
    7763 > distance 300[Repeated 1 time(s)]> color zone #1 near sel distance 160.89>
    7764 > color zone #1 near sel distance 162.01> color zone #1 near sel distance
    7765 > 23.73> view matrix models
    7766 > #3,0.9148,0.37497,0.15015,272.72,-0.20072,0.74462,-0.6366,357.54,-0.35051,0.55222,0.75644,352.79,#4,-0.17501,-0.17837,-0.96827,300.32,-0.011019,-0.98304,0.18308,289.64,-0.98451,0.04271,0.17007,350.81,#5,0.046501,-0.73948,0.67157,285.03,-0.16587,0.65725,0.73519,314.42,-0.98505,-0.14558,-0.092095,347.46,#6,0.13817,0.035476,0.98977,236.96,-0.7229,-0.6795,0.12527,313.55,0.67699,-0.73282,-0.068242,291.07,#7,-0.82079,-0.53173,0.20873,354.89,-0.51806,0.53897,-0.66417,308.12,0.24066,-0.65328,-0.71785,333.36,#8,-0.04305,0.99254,0.11405,-52.989,-0.90935,-0.086208,0.407,271.43,0.4138,-0.086188,0.90628,502.97,#10,0.17048,-0.93854,-0.30012,342.77,-0.36432,0.22296,-0.90419,353.65,0.91554,0.26349,-0.30392,330.16,#9,0.48168,-0.52169,-0.70415,336.01,0.54192,-0.45414,0.70716,394.9,-0.6887,-0.72222,0.063968,371.16,#11,0.64865,-0.27426,0.70995,310.02,-0.71703,-0.53297,0.44923,345.46,0.25518,-0.80045,-0.54236,303.68,#12,-0.67783,0.13357,-0.72298,248.11,0.73388,0.06354,-0.67631,353.12,-0.044396,-0.989,-0.14109,291.03[Repeated
    7767 > 3 time(s)]> color single #1> color zone #1 near sel distance 4.8> color zone
    7768 > #1 near sel distance 4> color zone #1 near sel distance 3.17> ui tool show
    7769 > "Volume Viewer"> volume #1 level 0.009138> color zone #1 near sel distance
    7770 > 3.17> color zone #1 near sel distance 3.1> color zone #1 near sel distance
    7771 > 3> color zone #1 near sel distance 3.5> color zone #1 near sel distance 3>
    7772 > color zone #1 near sel distance 5> color zone #1 near sel distance
    7773 > 4[Repeated 1 time(s)]> color zone #1 near sel distance 3> color zone #1 near
    7774 > sel distance 3.5[Repeated 1 time(s)]> save
    7775 > /fs/gpfs41/lv09/fileset01/pool/pool-
    7776 > briggs/tagiltsev/warp_4becca/alphafold_copi_gt_colored.cxs includeMaps
    7777 > true——— End of log from Sun Nov 5 21:56:53 2023 ———opened ChimeraX session 
    7778 > hide #!1 models> show #!1 models> show #3 models> hide #3 models> select add
    7779 > #240818 atoms, 41579 bonds, 1 pseudobond, 5141 residues, 13 models selected 
    7780 > select subtract #240818 atoms, 41579 bonds, 1 pseudobond, 5141 residues, 11
    7781 > models selected 
    7782 > select add #140818 atoms, 41579 bonds, 1 pseudobond, 5141 residues, 13
    7783 > models selected 
    7784 > select subtract #140818 atoms, 41579 bonds, 1 pseudobond, 5141 residues, 11
    7785 > models selected 
    7786 > select add #240818 atoms, 41579 bonds, 1 pseudobond, 5141 residues, 13
    7787 > models selected 
    7788 > select subtract #240818 atoms, 41579 bonds, 1 pseudobond, 5141 residues, 11
    7789 > models selected 
    7790 > select add #240818 atoms, 41579 bonds, 1 pseudobond, 5141 residues, 13
    7791 > models selected 
    7792 > show #!2 models> hide #!2 models> select subtract #240818 atoms, 41579
    7793 > bonds, 1 pseudobond, 5141 residues, 11 models selected 
    7794 > show #6 models> hide #6 models> show #6 models> hide #6 models> show #5 models> hide #5 models> show #6 models> hide #6 models> show #7 models> hide #7 models> show #7 models> show #6 models> hide #6 models> hide #7 models> show #8 models> hide #8 models> show #10 models> hide #10 models> show #10 models> hide #10 models> hide #!1 models> show #4 models> show #3 models> hide #3 models> show #3 models> hide #3 models> hide #4 models> show #4 models> show #7 models> hide #7 models> show #8 models> hide #8 models> show #!9 models> hide #!9 models> show #!9 models> hide #!9 models> show #10 models> hide #10 models> show #11 models> hide #11 models> show #12 models> hide #12 models> hide #4 models> show #3 models> show #4 models> show #5 models> show #!1 models> hide #4 models> hide #5 models> hide #!1 models> show #!1 models> hide #3 models> show #4 models> hide #4 models> show #4 models> hide #4 models> show #4 models> hide #4 models> show #5 models> hide #5 models> show #6 models> hide #6 models> show #7 models> hide #7 models> show #8 models> log metadata #6The model has no metadata> log chains #6 | Chain information for AlphaFold P84078 #6 
    7795 --- 
    7796 Chain | Description | UniProt 
    7797 A | ADP-ribosylation factor 1 | ARF1_MOUSE 
    7798  
    7799 
    7800 > log metadata #6
    7801 
    7802 The model has no metadata
    7803 
    7804 > log chains #6
    7805 
    7806 Chain information for AlphaFold P84078 #6 
    7807 --- 
    7808 Chain | Description | UniProt 
    7809 A | ADP-ribosylation factor 1 | ARF1_MOUSE 
    7810  
    7811 
    7812 > show #11 models
    7813 
    7814 > hide #8 models
    7815 
    7816 > hide #!1 models
    7817 
    7818 > show #!1 models
    7819 
    7820 > hide #!1 models
    7821 
    7822 > show #3 models
    7823 
    7824 > select subtract #3
    7825 
    7826 31008 atoms, 31547 bonds, 1 pseudobond, 3908 residues, 10 models selected 
    7827 
    7828 > select subtract #4
    7829 
    7830 23794 atoms, 24174 bonds, 1 pseudobond, 3003 residues, 9 models selected 
    7831 
    7832 > select subtract #5
    7833 
    7834 16293 atoms, 16555 bonds, 1 pseudobond, 2050 residues, 8 models selected 
    7835 
    7836 > select subtract #6
    7837 
    7838 14836 atoms, 15072 bonds, 1 pseudobond, 1869 residues, 7 models selected 
    7839 
    7840 > select subtract #7
    7841 
    7842 13379 atoms, 13589 bonds, 1 pseudobond, 1688 residues, 6 models selected 
    7843 
    7844 > select subtract #8
    7845 
    7846 11917 atoms, 12108 bonds, 1 pseudobond, 1509 residues, 5 models selected 
    7847 
    7848 > select subtract #9
    7849 
    7850 5244 atoms, 5322 bonds, 656 residues, 3 models selected 
    7851 
    7852 > select subtract #10
    7853 
    7854 3824 atoms, 3881 bonds, 479 residues, 2 models selected 
    7855 
    7856 > select subtract #11
    7857 
    7858 1457 atoms, 1483 bonds, 181 residues, 1 model selected 
    7859 
    7860 > select subtract #12
    7861 
    7862 Nothing selected 
    7863 
    7864 > show #4 models
    7865 
    7866 > hide #4 models
    7867 
    7868 > show #4 models
    7869 
    7870 > show #!1 models
    7871 
    7872 > hide #!1 models
    7873 
    7874 > show #6 models
    7875 
    7876 > hide #6 models
    7877 
    7878 > show #6 models
    7879 
    7880 > hide #6 models
    7881 
    7882 > show #12 models
    7883 
    7884 > hide #12 models
    7885 
    7886 > show #10 models
    7887 
    7888 > hide #10 models
    7889 
    7890 > show #8 models
    7891 
    7892 > hide #8 models
    7893 
    7894 > show #10 models
    7895 
    7896 > hide #4 models
    7897 
    7898 > show #5 models
    7899 
    7900 > hide #5 models
    7901 
    7902 > show #5 models
    7903 
    7904 > show #3,5,10-11 atoms
    7905 
    7906 > show #!1 models
    7907 
    7908 > hide #!1 models
    7909 
    7910 > show #!1 models
    7911 
    7912 > hide #!1 models
    7913 
    7914 > hide #3 models
    7915 
    7916 > show #3 models
    7917 
    7918 > hide #5 models
    7919 
    7920 > hide #3 models
    7921 
    7922 > hide #10 models
    7923 
    7924 > show #3 models
    7925 
    7926 > show #!1 models
    7927 
    7928 > hide #!1 models
    7929 
    7930 > show #!1 models
    7931 
    7932 > hide #!1 models
    7933 
    7934 > show #!1 models
    7935 
    7936 > hide #!1 models
    7937 
    7938 > hide #3 models
    7939 
    7940 > show #8 models
    7941 
    7942 > hide #8 models
    7943 
    7944 > show #4 models
    7945 
    7946 > show #4,11 atoms
    7947 
    7948 > show #!1 models
    7949 
    7950 > show #3 models
    7951 
    7952 > show #10 models
    7953 
    7954 > hide #!1 models
    7955 
    7956 > hide #3-4,10-11 atoms
    7957 
    7958 > select add #11
    7959 
    7960 2367 atoms, 2398 bonds, 298 residues, 1 model selected 
    7961 
    7962 > color sel byhetero
    7963 
    7964 > show sel atoms
    7965 
    7966 > select subtract #11
    7967 
    7968 Nothing selected 
    7969 
    7970 > show #5 models
    7971 
    7972 > show #!1 models
    7973 
    7974 > hide #!1 models
    7975 
    7976 > show #!1 models
    7977 
    7978 > show #!2 models
    7979 
    7980 > hide #!2 models
    7981 
    7982 > hide #!1 models
    7983 
    7984 > show #!1 models
    7985 
    7986 > hide #!1 models
    7987 
    7988 > show #!1 models
    7989 
    7990 > hide #!1 models
    7991 
    7992 > show #!1 models
    7993 
    7994 > hide #!1 models
    7995 
    7996 > show #!1 models
    7997 
    7998 > hide #!1 models
    7999 
    8000 > show #!1 models
    8001 
    8002 > hide #!1 models
    8003 
    8004 > show #!9 models
    8005 
    8006 > hide #!9 models
    8007 
    8008 > show #!9 models
    8009 
    8010 > show #!1 models
    8011 
    8012 > hide #!1 models
    8013 
    8014 > show #!1 models
    8015 
    8016 > hide #!1 models
    8017 
    8018 > show #!1 models
    8019 
    8020 > hide #!1 models
    8021 
    8022 > show #!1 models
    8023 
    8024 > hide #11 models
    8025 
    8026 > show #11 models
    8027 
    8028 > hide #11 models
    8029 
    8030 > show #11 models
    8031 
    8032 > hide #11 models
    8033 
    8034 > show #11 models
    8035 
    8036 > select add #10
    8037 
    8038 1420 atoms, 1441 bonds, 177 residues, 1 model selected 
    8039 
    8040 > select add #3
    8041 
    8042 11230 atoms, 11473 bonds, 1410 residues, 2 models selected 
    8043 
    8044 > select add #4
    8045 
    8046 18444 atoms, 18846 bonds, 2315 residues, 3 models selected 
    8047 
    8048 > show sel atoms
    8049 
    8050 > color sel byhetero
    8051 
    8052 > select subtract #3
    8053 
    8054 8634 atoms, 8814 bonds, 1082 residues, 2 models selected 
    8055 
    8056 > select subtract #4
    8057 
    8058 1420 atoms, 1441 bonds, 177 residues, 1 model selected 
    8059 
    8060 > select subtract #10
    8061 
    8062 Nothing selected 
    8063 
    8064 > hide #!1 models
    8065 
    8066 > hide #!9 models
    8067 
    8068 > show #!9 models
    8069 
    8070 > show #!1 models
    8071 
    8072 > volume #1 style mesh
    8073 
    8074 > volume #1 style surface
    8075 
    8076 > volume #1 color #b1b1b17f
    8077 
    8078 > volume #1 color #afafaf7f
    8079 
    8080 > volume #1 level 0.0118
    8081 
    8082 > volume #1 level 0.008577
    8083 
    8084 > volume #1 level 0.0104
    8085 
    8086 > volume #2 level 0.1605
    8087 
    8088 > volume #1 level 0.008436
    8089 
    8090 > volume #1 level 0.01026
    8091 
    8092 > volume #1 level 0.007033
    8093 
    8094 > volume #1 level 0.007875
    8095 
    8096 > volume #1 level 0.01068
    8097 
    8098 > volume #1 level 0.008857
    8099 
    8100 > volume #1 level 0.007174
    8101 
    8102 > volume #1 level 0.009839
    8103 
    8104 > ui tool show "Side View"
    8105 
    8106 > volume #1 level 0.009278
    8107 
    8108 > hide #11 models
    8109 
    8110 > hide #!9 models
    8111 
    8112 > hide #10 models
    8113 
    8114 > hide #5 models
    8115 
    8116 > hide #4 models
    8117 
    8118 Drag select of 1422 atoms, 289 residues, 1232 bonds 
    8119 
    8120 > ui tool show "Fit in Map"
    8121 
    8122 > show #!1 models
    8123 
    8124 > fitmap sel inMap #1
    8125 
    8126 Fit molecule acop F8WHL2 (#3) to map postprocess.mrc (#1) using 2365 atoms 
    8127 average map value = 0.008396, steps = 64 
    8128 shifted from previous position = 0.487 
    8129 rotated from previous position = 1.71 degrees 
    8130 atoms outside contour = 1428, contour level = 0.0092781 
    8131  
    8132 Position of acop F8WHL2 (#3) relative to postprocess.mrc (#1) coordinates: 
    8133 Matrix rotation and translation 
    8134 0.91219836 0.37649899 0.16168688 273.02716587 
    8135 -0.20531480 0.76147730 -0.61481553 358.66813907 
    8136 -0.35459832 0.52763701 0.77191917 352.72945796 
    8137 Axis 0.82659436 0.37354588 -0.42095753 
    8138 Axis point 0.00000000 -548.32199304 667.79519136 
    8139 Rotation angle (degrees) 43.71407343 
    8140 Shift along axis 211.17759714 
    8141  
    8142 
    8143 > fitmap sel inMap #1
    8144 
    8145 Fit molecule acop F8WHL2 (#3) to map postprocess.mrc (#1) using 2365 atoms 
    8146 average map value = 0.008396, steps = 44 
    8147 shifted from previous position = 0.0602 
    8148 rotated from previous position = 0.122 degrees 
    8149 atoms outside contour = 1426, contour level = 0.0092781 
    8150  
    8151 Position of acop F8WHL2 (#3) relative to postprocess.mrc (#1) coordinates: 
    8152 Matrix rotation and translation 
    8153 0.91165951 0.37825395 0.16062650 273.02136836 
    8154 -0.20726890 0.76074469 -0.61506675 358.63406864 
    8155 -0.35484718 0.52743858 0.77194041 352.76062362 
    8156 Axis 0.82585192 0.37260651 -0.42324106 
    8157 Axis point 0.00000000 -547.86166392 669.09704534 
    8158 Rotation angle (degrees) 43.76587675 
    8159 Shift along axis 209.80183211 
    8160  
    8161 
    8162 > fitmap sel inMap #1
    8163 
    8164 Fit molecule acop F8WHL2 (#3) to map postprocess.mrc (#1) using 2365 atoms 
    8165 average map value = 0.008396, steps = 48 
    8166 shifted from previous position = 0.008 
    8167 rotated from previous position = 0.0126 degrees 
    8168 atoms outside contour = 1425, contour level = 0.0092781 
    8169  
    8170 Position of acop F8WHL2 (#3) relative to postprocess.mrc (#1) coordinates: 
    8171 Matrix rotation and translation 
    8172 0.91157168 0.37844088 0.16068466 273.02809909 
    8173 -0.20736646 0.76067368 -0.61512169 358.62890418 
    8174 -0.35501579 0.52740690 0.77188453 352.75435033 
    8175 Axis 0.82573495 0.37271004 -0.42337811 
    8176 Axis point 0.00000000 -547.84692199 669.07342633 
    8177 Rotation angle (degrees) 43.77476898 
    8178 Shift along axis 209.76496906 
    8179  
    8180 
    8181 > fitmap sel inMap #1
    8182 
    8183 Fit molecule acop F8WHL2 (#3) to map postprocess.mrc (#1) using 2365 atoms 
    8184 average map value = 0.008396, steps = 40 
    8185 shifted from previous position = 0.0437 
    8186 rotated from previous position = 0.0783 degrees 
    8187 atoms outside contour = 1426, contour level = 0.0092781 
    8188  
    8189 Position of acop F8WHL2 (#3) relative to postprocess.mrc (#1) coordinates: 
    8190 Matrix rotation and translation 
    8191 0.91189991 0.37734607 0.16139540 273.02985270 
    8192 -0.20623049 0.76130412 -0.61472353 358.67292985 
    8193 -0.35483449 0.52728168 0.77205343 352.73949104 
    8194 Axis 0.82605985 0.37341055 -0.42212519 
    8195 Axis point 0.00000000 -548.53424760 668.55477028 
    8196 Rotation angle (degrees) 43.72805759 
    8197 Shift along axis 210.57103104 
    8198  
    8199 
    8200 > fitmap sel inMap #1
    8201 
    8202 Fit molecule acop F8WHL2 (#3) to map postprocess.mrc (#1) using 2365 atoms 
    8203 average map value = 0.008396, steps = 44 
    8204 shifted from previous position = 0.0362 
    8205 rotated from previous position = 0.059 degrees 
    8206 atoms outside contour = 1428, contour level = 0.0092781 
    8207  
    8208 Position of acop F8WHL2 (#3) relative to postprocess.mrc (#1) coordinates: 
    8209 Matrix rotation and translation 
    8210 0.91166197 0.37815506 0.16084521 273.02714315 
    8211 -0.20706981 0.76081322 -0.61504904 358.63509873 
    8212 -0.35495707 0.52741064 0.77190898 352.75166197 
    8213 Axis 0.82584358 0.37285518 -0.42303830 
    8214 Axis point 0.00000000 -547.96751807 668.91182334 
    8215 Rotation angle (degrees) 43.76423830 
    8216 Shift along axis 209.96920099 
    8217  
    8218 
    8219 > select clear
    8220 
    8221 > show #11 models
    8222 
    8223 > volume #1 level 0.006975
    8224 
    8225 > volume #1 level 0.006399
    8226 
    8227 > show #!9 models
    8228 
    8229 > show #10 models
    8230 
    8231 > show #4 models
    8232 
    8233 > show #5 models
    8234 
    8235 > volume #1 level 0.009134
    8236 
    8237 > volume #1 level 0.01172
    8238 
    8239 > show #8 models
    8240 
    8241 > volume #1 level 0.008702
    8242 
    8243 > volume #1 level 0.006543
    8244 
    8245 > volume #1 style image region 0,0,121,243,243,121 step 1 showOutlineBox true
    8246 
    8247 > volume #1 region 0,0,0,243,243,243 step 1
    8248 
    8249 > volume #1 style surface region 0,0,0,243,243,243 step 1
    8250 
    8251 > volume #1 style image colorMode opaque8 orthoplanes xyz positionPlanes
    8252 > 121,121,121 imageMode orthoplanes
    8253 
    8254 > select clear
    8255 
    8256 [Repeated 2 time(s)]Drag select of 1 atoms 
    8257 
    8258 > volume #1 region 0,0,121,243,243,121 step 1 colorMode auto8 imageMode "full
    8259 > region"
    8260 
    8261 > volume #1 level -0.001441,0 level 0.008572,0.8 level 0.03099,1
    8262 
    8263 > volume #1 level -0.002945,0 level 0.008572,0.8 level 0.03099,1
    8264 
    8265 > view orient
    8266 
    8267 > volume #2 level 0.07496
    8268 
    8269 > volume #2 level 0.06071
    8270 
    8271 > volume #2 level 0.07496
    8272 
    8273 > volume #1 region 0,0,0,243,243,243 step 1
    8274 
    8275 > volume #1 style surface region 0,0,0,243,243,243 step 1
    8276 
    8277 > volume #1 level 0.005561
    8278 
    8279 > volume #1 level 0.006964
    8280 
    8281 > volume #1 level 0.00963
    8282 
    8283 > ui tool show "Side View"
    8284 
    8285 > volume #1 level 0.007183
    8286 
    8287 > volume #1 level 0.006895
    8288 
    8289 > hide #4 models
    8290 
    8291 > show #4 models
    8292 
    8293 > hide #3 models
    8294 
    8295 > show #3 models
    8296 
    8297 > hide #3 models
    8298 
    8299 > volume #1 level 0.005456
    8300 
    8301 > volume #2 level 0.1391
    8302 
    8303 > volume #2 level 0.1017
    8304 
    8305 > volume #2 level 0.107
    8306 
    8307 > volume #1 level 0.004161
    8308 
    8309 > volume #2 level 0.08921
    8310 
    8311 > volume #1 level 0.007039
    8312 
    8313 > volume #2 level 0.07139
    8314 
    8315 > show #3 models
    8316 
    8317 > show #6 models
    8318 
    8319 > select add #4
    8320 
    8321 7215 atoms, 7373 bonds, 906 residues, 2 models selected 
    8322 
    8323 > select subtract #4
    8324 
    8325 1 atom, 1 residue, 1 model selected 
    8326 
    8327 > show #7 models
    8328 
    8329 > volume #2 level 0.1088
    8330 
    8331 > volume #1 level 0.008479
    8332 
    8333 > volume #1 level 0.007615
    8334 
    8335 > save /fs/gpfs41/lv09/fileset01/pool/pool-
    8336 > briggs/taylor/em_data/20220715_COPI_Golph/alignments/alphafold_copi_colored_RT.cxs
    8337 
    8338 ——— End of log from Mon Nov 6 14:26:30 2023 ———
    8339 
    8340 opened ChimeraX session 
    8341 
    8342 > view matrix models
    8343 > #5,0.046501,-0.73948,0.67157,279.15,-0.16587,0.65725,0.73519,333.32,-0.98505,-0.14558,-0.092095,332.17
    8344 
    8345 > undo
    8346 
    8347 > select add #5
    8348 
    8349 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    8350 
    8351 > select subtract #5
    8352 
    8353 Nothing selected 
    8354 
    8355 > select add #5
    8356 
    8357 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    8358 
    8359 > select subtract #5
    8360 
    8361 Nothing selected 
    8362 
    8363 > select add #5
    8364 
    8365 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    8366 
    8367 > select subtract #5
    8368 
    8369 Nothing selected 
    8370 
    8371 > view orient
    8372 
    8373 > ui tool show "Side View"
    8374 
    8375 [Repeated 1 time(s)]
    8376 
    8377 > open "/fs/gpfs41/lv09/fileset01/pool/pool-
    8378 > briggs/taylor/em_data/20220715_COPI_Golph/alignments/Golph3_ Q9CRA5.pdb"
    8379 
    8380 Golph3_ Q9CRA5.pdb title: 
    8381 Alphafold monomer V2.0 prediction for golgi phosphoprotein 3 (Q9CRA5) [more
    8382 info...] 
    8383  
    8384 Chain information for Golph3_ Q9CRA5.pdb #13 
    8385 --- 
    8386 Chain | Description | UniProt 
    8387 A | golgi phosphoprotein 3 | GOLP3_MOUSE 
    8388  
    8389 
    8390 > color #13 #aa00ffff
    8391 
    8392 > select add #13
    8393 
    8394 2367 atoms, 2398 bonds, 298 residues, 1 model selected 
    8395 
    8396 > view matrix models #13,1,0,0,276.76,0,1,0,332.9,0,0,1,0
    8397 
    8398 > view orient
    8399 
    8400 > view matrix models #13,1,0,0,355.84,0,1,0,382.85,0,0,1,275.03
    8401 
    8402 > view orient
    8403 
    8404 > hide #!1 models
    8405 
    8406 > hide #3 models
    8407 
    8408 > hide #4 models
    8409 
    8410 > hide #5 models
    8411 
    8412 > hide #6 models
    8413 
    8414 > hide #7 models
    8415 
    8416 > hide #8 models
    8417 
    8418 > hide #!9 models
    8419 
    8420 > hide #10 models
    8421 
    8422 > view matrix models #13,1,0,0,268.7,0,1,0,322.92,0,0,1,275.03
    8423 
    8424 > ui mousemode right "rotate selected models"
    8425 
    8426 > view matrix models
    8427 > #13,0.97373,0.15944,-0.16259,268.4,0.044839,0.56579,0.82333,324.28,0.22326,-0.80899,0.54377,274.73
    8428 
    8429 > view matrix models
    8430 > #13,0.32122,0.91528,-0.24308,262.8,0.6686,-0.037407,0.74268,329.55,0.67067,-0.40108,-0.62397,277.87
    8431 
    8432 > select subtract #13
    8433 
    8434 Nothing selected 
    8435 
    8436 > select add #11
    8437 
    8438 2367 atoms, 2398 bonds, 298 residues, 1 model selected 
    8439 
    8440 > hide sel atoms
    8441 
    8442 > select add #13
    8443 
    8444 4734 atoms, 4796 bonds, 596 residues, 2 models selected 
    8445 
    8446 > select subtract #11
    8447 
    8448 2367 atoms, 2398 bonds, 298 residues, 1 model selected 
    8449 
    8450 > view matrix models
    8451 > #13,0.16284,0.95393,-0.25201,261.15,-0.28856,0.2903,0.91239,320.3,0.94351,-0.075856,0.32253,283.56
    8452 
    8453 > view matrix models
    8454 > #13,-0.78377,0.61861,-0.055017,250.68,-0.31405,-0.31835,0.89444,318.7,0.5358,0.71831,0.44379,281.11
    8455 
    8456 > view matrix models
    8457 > #13,-0.5019,0.83478,-0.22636,253.8,-0.70387,-0.24212,0.66779,314.17,0.50265,0.49449,0.7091,280.86
    8458 
    8459 > view matrix models
    8460 > #13,0.065166,-0.9415,0.33066,257.36,-0.3304,0.29232,0.89743,319.82,-0.94159,-0.16773,-0.29202,261.72
    8461 
    8462 > view matrix models
    8463 > #13,0.012373,0.97222,-0.23374,259.61,-0.60886,0.19276,0.76951,316.33,0.79318,0.1328,0.59433,282.97
    8464 
    8465 > view matrix models
    8466 > #13,-0.59761,-0.48095,-0.64152,249.08,-0.74685,0.042854,0.66361,314.3,-0.29167,0.8757,-0.38481,270.73
    8467 
    8468 > view matrix models
    8469 > #13,-0.15915,-0.98598,0.050164,254.24,-0.69624,0.14812,0.70236,315.15,-0.69994,0.076857,-0.71005,263.93
    8470 
    8471 > view matrix models
    8472 > #13,-0.66249,-0.74742,-0.049687,249.11,-0.69396,0.58743,0.41634,315.48,-0.282,0.31031,-0.90785,268.5
    8473 
    8474 > view matrix models
    8475 > #13,-0.55091,-0.8161,0.17456,250.65,-0.5615,0.5172,0.64592,317.26,-0.61742,0.25783,-0.74318,265.13
    8476 
    8477 > view matrix models
    8478 > #13,-0.93688,0.069665,-0.34263,247.24,-0.088586,0.90068,0.42535,322.68,0.33824,0.42886,-0.83766,275.58
    8479 
    8480 > view matrix models
    8481 > #13,-0.43282,-0.17251,-0.88482,250.98,-0.83401,0.44921,0.32038,313.47,0.3422,0.87661,-0.3383,277.66
    8482 
    8483 > view matrix models
    8484 > #13,-0.057092,0.66385,-0.74569,257.1,-0.6289,0.55617,0.54328,316.39,0.77539,0.49998,0.38574,283.11
    8485 
    8486 > view matrix models
    8487 > #13,0.61602,-0.32904,0.71571,265.43,-0.73709,0.079722,0.67107,314.5,-0.27787,-0.94095,-0.19342,267.45
    8488 
    8489 > view matrix models
    8490 > #13,0.69392,0.13166,0.70791,267.23,-0.72004,0.12232,0.68306,314.8,0.0033426,-0.98372,0.17968,271.2
    8491 
    8492 > ui mousemode right "translate selected models"
    8493 
    8494 > view matrix models
    8495 > #13,0.69392,0.13166,0.70791,301.65,-0.72004,0.12232,0.68306,347.24,0.0033426,-0.98372,0.17968,308.86
    8496 
    8497 > view matrix models
    8498 > #13,0.69392,0.13166,0.70791,309.76,-0.72004,0.12232,0.68306,353.07,0.0033426,-0.98372,0.17968,297.95
    8499 
    8500 > view matrix models
    8501 > #13,0.69392,0.13166,0.70791,305.93,-0.72004,0.12232,0.68306,351.19,0.0033426,-0.98372,0.17968,303.08
    8502 
    8503 > ui mousemode right "rotate selected models"
    8504 
    8505 > view matrix models
    8506 > #13,0.11747,-0.64077,0.75869,298.2,-0.61649,0.55189,0.56157,352.95,-0.77855,-0.53369,-0.3302,294.5
    8507 
    8508 > view matrix models
    8509 > #13,0.1885,-0.97807,0.088577,296.79,-0.84088,-0.11415,0.52904,349.05,-0.50733,-0.17421,-0.84396,297.06
    8510 
    8511 > view matrix models
    8512 > #13,0.59014,-0.11275,0.79939,304.49,-0.72863,-0.50075,0.46728,349.31,0.34761,-0.85822,-0.37766,305.84
    8513 
    8514 > ui mousemode right "translate selected models"
    8515 
    8516 > view matrix models
    8517 > #13,0.59014,-0.11275,0.79939,308.27,-0.72863,-0.50075,0.46728,345.91,0.34761,-0.85822,-0.37766,300.91
    8518 
    8519 > ui tool show "Fit in Map"
    8520 
    8521 > fitmap #13 inMap #1
    8522 
    8523 Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367
    8524 atoms 
    8525 average map value = 0.00809, steps = 76 
    8526 shifted from previous position = 3.41 
    8527 rotated from previous position = 10.8 degrees 
    8528 atoms outside contour = 1145, contour level = 0.007615 
    8529  
    8530 Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1)
    8531 coordinates: 
    8532 Matrix rotation and translation 
    8533 0.64614882 -0.25313043 0.72001159 309.96620079 
    8534 -0.70221101 -0.56674711 0.43092622 345.46001007 
    8535 0.29898395 -0.78404254 -0.54395395 303.52015626 
    8536 Axis -0.89203727 0.30912099 -0.32971763 
    8537 Axis point 0.00000000 273.71750205 -0.02590981 
    8538 Rotation angle (degrees) 137.07755023 
    8539 Shift along axis -269.78841019 
    8540  
    8541 
    8542 > fitmap #13 inMap #1
    8543 
    8544 Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367
    8545 atoms 
    8546 average map value = 0.008089, steps = 44 
    8547 shifted from previous position = 0.0456 
    8548 rotated from previous position = 0.0682 degrees 
    8549 atoms outside contour = 1141, contour level = 0.007615 
    8550  
    8551 Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1)
    8552 coordinates: 
    8553 Matrix rotation and translation 
    8554 0.64651584 -0.25217749 0.72001651 309.93070193 
    8555 -0.70151346 -0.56742773 0.43116659 345.48458153 
    8556 0.29982682 -0.78385731 -0.54375692 303.52703002 
    8557 Axis -0.89215987 0.30853416 -0.32993550 
    8558 Axis point 0.00000000 273.57083787 -0.00990298 
    8559 Rotation angle (degrees) 137.08245403 
    8560 Shift along axis -270.05828434 
    8561  
    8562 
    8563 > fitmap #13 inMap #1
    8564 
    8565 Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367
    8566 atoms 
    8567 average map value = 0.008089, steps = 44 
    8568 shifted from previous position = 0.0194 
    8569 rotated from previous position = 0.0463 degrees 
    8570 atoms outside contour = 1142, contour level = 0.007615 
    8571  
    8572 Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1)
    8573 coordinates: 
    8574 Matrix rotation and translation 
    8575 0.64604103 -0.25275846 0.72023895 309.94363828 
    8576 -0.70206406 -0.56707846 0.43072970 345.49036416 
    8577 0.29956141 -0.78392294 -0.54380858 303.51714131 
    8578 Axis -0.89201211 0.30893561 -0.32995938 
    8579 Axis point 0.00000000 273.66219930 -0.04201137 
    8580 Rotation angle (degrees) 137.08990962 
    8581 Shift along axis -269.88752898 
    8582  
    8583 
    8584 > fitmap #13 inMap #1
    8585 
    8586 Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367
    8587 atoms 
    8588 average map value = 0.00809, steps = 44 
    8589 shifted from previous position = 0.0418 
    8590 rotated from previous position = 0.0504 degrees 
    8591 atoms outside contour = 1143, contour level = 0.007615 
    8592  
    8593 Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1)
    8594 coordinates: 
    8595 Matrix rotation and translation 
    8596 0.64636118 -0.25319855 0.71979699 309.93048754 
    8597 -0.70211612 -0.56670327 0.43113844 345.45300114 
    8598 0.29874768 -0.78405222 -0.54406978 303.52367429 
    8599 Axis -0.89210135 0.30910265 -0.32956142 
    8600 Axis point 0.00000000 273.71820034 0.01220992 
    8601 Rotation angle (degrees) 137.07164569 
    8602 Shift along axis -269.73866191 
    8603  
    8604 
    8605 > fitmap #13 inMap #1
    8606 
    8607 Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367
    8608 atoms 
    8609 average map value = 0.00809, steps = 44 
    8610 shifted from previous position = 0.0257 
    8611 rotated from previous position = 0.0502 degrees 
    8612 atoms outside contour = 1141, contour level = 0.007615 
    8613  
    8614 Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1)
    8615 coordinates: 
    8616 Matrix rotation and translation 
    8617 0.64652691 -0.25247006 0.71990403 309.92686216 
    8618 -0.70167034 -0.56717519 0.43124359 345.47615271 
    8619 0.29943561 -0.78394590 -0.54384478 303.51593635 
    8620 Axis -0.89215765 0.30869599 -0.32979010 
    8621 Axis point 0.00000000 273.61712486 -0.00837966 
    8622 Rotation angle (degrees) 137.07506047 
    8623 Shift along axis -269.95306990 
    8624  
    8625 
    8626 > fitmap #13 inMap #1
    8627 
    8628 Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367
    8629 atoms 
    8630 average map value = 0.008089, steps = 60 
    8631 shifted from previous position = 0.0226 
    8632 rotated from previous position = 0.0373 degrees 
    8633 atoms outside contour = 1142, contour level = 0.007615 
    8634  
    8635 Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1)
    8636 coordinates: 
    8637 Matrix rotation and translation 
    8638 0.64611264 -0.25289852 0.72012554 309.94576635 
    8639 -0.70211941 -0.56690516 0.43086759 345.48140307 
    8640 0.29927711 -0.78400311 -0.54384955 303.52003959 
    8641 Axis -0.89202854 0.30901133 -0.32984403 
    8642 Axis point 0.00000000 273.69093966 -0.03799504 
    8643 Rotation angle (degrees) 137.08132893 
    8644 Shift along axis -269.83707582 
    8645  
    8646 
    8647 > fitmap #13 inMap #1
    8648 
    8649 Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367
    8650 atoms 
    8651 average map value = 0.00809, steps = 44 
    8652 shifted from previous position = 0.0335 
    8653 rotated from previous position = 0.0327 degrees 
    8654 atoms outside contour = 1142, contour level = 0.007615 
    8655  
    8656 Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1)
    8657 coordinates: 
    8658 Matrix rotation and translation 
    8659 0.64640789 -0.25311440 0.71978464 309.92928487 
    8660 -0.70205233 -0.56674684 0.43118505 345.45377982 
    8661 0.29879653 -0.78404790 -0.54404919 303.52341629 
    8662 Axis -0.89211568 0.30905194 -0.32957020 
    8663 Axis point 0.00000000 273.70689544 0.01206002 
    8664 Rotation angle (degrees) 137.07064729 
    8665 Shift along axis -269.76188543 
    8666  
    8667 
    8668 > fitmap #13 inMap #1
    8669 
    8670 Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367
    8671 atoms 
    8672 average map value = 0.00809, steps = 44 
    8673 shifted from previous position = 0.00803 
    8674 rotated from previous position = 0.0272 degrees 
    8675 atoms outside contour = 1144, contour level = 0.007615 
    8676  
    8677 Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1)
    8678 coordinates: 
    8679 Matrix rotation and translation 
    8680 0.64651368 -0.25270084 0.71983495 309.92467471 
    8681 -0.70180692 -0.56697645 0.43128268 345.45873947 
    8682 0.29914397 -0.78401530 -0.54390523 303.52203189 
    8683 Axis -0.89214924 0.30882890 -0.32968840 
    8684 Axis point 0.00000000 273.65121371 -0.00046679 
    8685 Rotation angle (degrees) 137.06980045 
    8686 Shift along axis -269.87911520 
    8687  
    8688 
    8689 > fitmap #13 inMap #1
    8690 
    8691 Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367
    8692 atoms 
    8693 average map value = 0.00809, steps = 36 
    8694 shifted from previous position = 0.0382 
    8695 rotated from previous position = 0.0185 degrees 
    8696 atoms outside contour = 1143, contour level = 0.007615 
    8697  
    8698 Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1)
    8699 coordinates: 
    8700 Matrix rotation and translation 
    8701 0.64630410 -0.25291434 0.71994815 309.96058094 
    8702 -0.70202489 -0.56686202 0.43107830 345.44892887 
    8703 0.29908538 -0.78402920 -0.54391741 303.51941258 
    8704 Axis -0.89208498 0.30898119 -0.32971961 
    8705 Axis point 0.00000000 273.68044455 -0.01876412 
    8706 Rotation angle (degrees) 137.07431483 
    8707 Shift along axis -269.85025963 
    8708  
    8709 
    8710 > fitmap #13 inMap #1
    8711 
    8712 Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367
    8713 atoms 
    8714 average map value = 0.00809, steps = 40 
    8715 shifted from previous position = 0.011 
    8716 rotated from previous position = 0.0289 degrees 
    8717 atoms outside contour = 1144, contour level = 0.007615 
    8718  
    8719 Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1)
    8720 coordinates: 
    8721 Matrix rotation and translation 
    8722 0.64629761 -0.25253292 0.72008785 309.96423516 
    8723 -0.70183762 -0.56713436 0.43102502 345.45952995 
    8724 0.29953856 -0.78395519 -0.54377469 303.52011382 
    8725 Axis -0.89208737 0.30878422 -0.32989760 
    8726 Axis point 0.00000000 273.62558016 -0.03473124 
    8727 Rotation angle (degrees) 137.08004063 
    8728 Shift along axis -269.97328544 
    8729  
    8730 
    8731 > fitmap #13 inMap #1
    8732 
    8733 Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367
    8734 atoms 
    8735 average map value = 0.00809, steps = 40 
    8736 shifted from previous position = 0.0105 
    8737 rotated from previous position = 0.0439 degrees 
    8738 atoms outside contour = 1145, contour level = 0.007615 
    8739  
    8740 Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1)
    8741 coordinates: 
    8742 Matrix rotation and translation 
    8743 0.64606725 -0.25321007 0.72005678 309.97169872 
    8744 -0.70226344 -0.56678527 0.43079057 345.46213640 
    8745 0.29903707 -0.78398923 -0.54400158 303.51790237 
    8746 Axis -0.89201641 0.30915603 -0.32974122 
    8747 Axis point 0.00000000 273.71811066 -0.02066242 
    8748 Rotation angle (degrees) 137.08459098 
    8749 Shift along axis -269.78050527 
    8750  
    8751 
    8752 > ui mousemode right "rotate selected models"
    8753 
    8754 > view matrix models
    8755 > #13,0.60865,-0.30325,0.7332,309.49,-0.75282,-0.51259,0.41293,344.99,0.25061,-0.8033,-0.54029,302.96
    8756 
    8757 > fitmap #13 inMap #1
    8758 
    8759 Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess.mrc (#1) using 2367
    8760 atoms 
    8761 average map value = 0.00809, steps = 52 
    8762 shifted from previous position = 0.584 
    8763 rotated from previous position = 4.55 degrees 
    8764 atoms outside contour = 1145, contour level = 0.007615 
    8765  
    8766 Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess.mrc (#1)
    8767 coordinates: 
    8768 Matrix rotation and translation 
    8769 0.64612560 -0.25328407 0.71997839 309.97378268 
    8770 -0.70229521 -0.56665464 0.43091061 345.45261473 
    8771 0.29883630 -0.78405975 -0.54401026 303.51809865 
    8772 Axis -0.89202933 0.30920186 -0.32966328 
    8773 Axis point 0.00000000 273.73630342 -0.02211936 
    8774 Rotation angle (degrees) 137.07700574 
    8775 Shift along axis -269.74988755 
    8776  
    8777 
    8778 > close #11
    8779 
    8780 > select subtract #13
    8781 
    8782 Nothing selected 
    8783 
    8784 > show #13 atoms
    8785 
    8786 > open /fs/gpfs41/lv09/fileset01/pool/pool-
    8787 > briggs/taylor/em_data/20220715_COPI_Golph/alignments/CopZ1_P61924.pdb
    8788 
    8789 CopZ1_P61924.pdb title: 
    8790 Alphafold monomer V2.0 prediction for coatomer subunit ζ-1 (P61924) [more
    8791 info...] 
    8792  
    8793 Chain information for CopZ1_P61924.pdb #11 
    8794 --- 
    8795 Chain | Description | UniProt 
    8796 A | coatomer subunit ζ-1 | COPZ1_MOUSE 
    8797  
    8798 
    8799 > select add #11
    8800 
    8801 1420 atoms, 1441 bonds, 177 residues, 1 model selected 
    8802 
    8803 > hide #13 models
    8804 
    8805 > show #10 models
    8806 
    8807 > color #11 yellow
    8808 
    8809 > view orient
    8810 
    8811 > ui mousemode right "translate selected models"
    8812 
    8813 > view matrix models #11,1,0,0,412.97,0,1,0,362.45,0,0,1,0
    8814 
    8815 > ui mousemode right "rotate selected models"
    8816 
    8817 > view matrix models
    8818 > #11,0.28196,-0.95943,0,404.1,0.95943,0.28196,0,362.86,0,0,1,0
    8819 
    8820 > select subtract #11
    8821 
    8822 Nothing selected 
    8823 
    8824 > select add #10
    8825 
    8826 1420 atoms, 1441 bonds, 177 residues, 1 model selected 
    8827 
    8828 > hide sel atoms
    8829 
    8830 > select subtract #10
    8831 
    8832 Nothing selected 
    8833 
    8834 > select add #11
    8835 
    8836 1420 atoms, 1441 bonds, 177 residues, 1 model selected 
    8837 
    8838 > view matrix models
    8839 > #11,0.033721,-0.99943,0,402.7,0.99943,0.033721,0,361.63,0,0,1,0
    8840 
    8841 > ui mousemode right "translate selected models"
    8842 
    8843 > view matrix models
    8844 > #11,0.033721,-0.99943,0,342.47,0.99943,0.033721,0,336.17,0,0,1,0
    8845 
    8846 > ui mousemode right "rotate selected models"
    8847 
    8848 > ui mousemode right "translate selected models"
    8849 
    8850 > view matrix models
    8851 > #11,0.033721,-0.99943,0,192.3,0.99943,0.033721,0,291.19,0,0,1,246.14
    8852 
    8853 > ui mousemode right "rotate selected models"
    8854 
    8855 > view matrix models
    8856 > #11,-0.51418,0.84644,0.13844,201.18,0.23149,-0.018464,0.97266,293.63,0.82585,0.53217,-0.18645,245.33
    8857 
    8858 > view matrix models
    8859 > #11,-0.81006,-0.32615,-0.48726,188.99,-0.42602,0.89837,0.10693,290.12,0.40287,0.2942,-0.86669,237.53
    8860 
    8861 > view matrix models
    8862 > #11,0.33494,-0.93767,-0.092694,193.46,-0.049436,0.080753,-0.99551,280.02,0.94094,0.33801,-0.019308,245.85
    8863 
    8864 > ui mousemode right "translate selected models"
    8865 
    8866 > view matrix models
    8867 > #11,0.33494,-0.93767,-0.092694,180.24,-0.049436,0.080753,-0.99551,304.01,0.94094,0.33801,-0.019308,252.33
    8868 
    8869 > view matrix models
    8870 > #11,0.33494,-0.93767,-0.092694,182.45,-0.049436,0.080753,-0.99551,302.85,0.94094,0.33801,-0.019308,249.69
    8871 
    8872 > ui mousemode right "rotate selected models"
    8873 
    8874 > view matrix models
    8875 > #11,0.58303,-0.77258,-0.25137,183.53,-0.12599,0.21968,-0.9674,303.46,0.80262,0.5957,0.030739,250.84
    8876 
    8877 > ui mousemode right "translate selected models"
    8878 
    8879 > view matrix models
    8880 > #11,0.58303,-0.77258,-0.25137,394.78,-0.12599,0.21968,-0.9674,292.48,0.80262,0.5957,0.030739,322.66
    8881 
    8882 > view matrix models
    8883 > #11,0.58303,-0.77258,-0.25137,342.1,-0.12599,0.21968,-0.9674,297.41,0.80262,0.5957,0.030739,334.03
    8884 
    8885 > ui mousemode right "rotate selected models"
    8886 
    8887 > view matrix models
    8888 > #11,0.09807,-0.60668,0.78887,347.56,0.87809,-0.32029,-0.35548,303.05,0.46833,0.72757,0.50131,336.29
    8889 
    8890 > ui mousemode right "translate selected models"
    8891 
    8892 > view matrix models
    8893 > #11,0.09807,-0.60668,0.78887,290.43,0.87809,-0.32029,-0.35548,305.55,0.46833,0.72757,0.50131,310.6
    8894 
    8895 > ui mousemode right "rotate selected models"
    8896 
    8897 > view matrix models
    8898 > #11,-0.51411,-0.43145,-0.74131,278.55,-0.57073,0.81725,-0.079829,307.03,0.64028,0.38205,-0.6664,301.81
    8899 
    8900 > ui mousemode right "translate selected models"
    8901 
    8902 > view matrix models
    8903 > #11,-0.51411,-0.43145,-0.74131,336.74,-0.57073,0.81725,-0.079829,305.08,0.64028,0.38205,-0.6664,335.87
    8904 
    8905 > ui mousemode right "rotate selected models"
    8906 
    8907 > view matrix models
    8908 > #11,-0.5611,-0.75996,-0.32808,337.34,-0.52848,0.63395,-0.56463,301.06,0.63709,-0.14343,-0.75733,332.26
    8909 
    8910 > ui mousemode right "translate selected models"
    8911 
    8912 > view matrix models
    8913 > #11,-0.5611,-0.75996,-0.32808,344.5,-0.52848,0.63395,-0.56463,300.61,0.63709,-0.14343,-0.75733,333.65
    8914 
    8915 > fitmap #11 inMap #1
    8916 
    8917 Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420
    8918 atoms 
    8919 average map value = 0.009085, steps = 96 
    8920 shifted from previous position = 14.2 
    8921 rotated from previous position = 39.8 degrees 
    8922 atoms outside contour = 596, contour level = 0.007615 
    8923  
    8924 Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1)
    8925 coordinates: 
    8926 Matrix rotation and translation 
    8927 -0.65612108 -0.66306754 -0.36034228 358.45599666 
    8928 0.03304888 0.45178776 -0.89151310 302.54901226 
    8929 0.75393163 -0.59684945 -0.27451383 333.03309009 
    8930 Axis 0.21883981 -0.82754522 0.51698941 
    8931 Axis point 141.38063663 0.00000000 344.83519421 
    8932 Rotation angle (degrees) 137.68233649 
    8933 Shift along axis 0.24603705 
    8934  
    8935 
    8936 > view matrix models
    8937 > #11,-0.65612,-0.66307,-0.36034,337.95,0.033049,0.45179,-0.89151,304.28,0.75393,-0.59685,-0.27451,334.97
    8938 
    8939 > view matrix models
    8940 > #11,-0.65612,-0.66307,-0.36034,344.16,0.033049,0.45179,-0.89151,302.51,0.75393,-0.59685,-0.27451,317.7
    8941 
    8942 > ui mousemode right "rotate selected models"
    8943 
    8944 > view matrix models
    8945 > #11,-0.48065,-0.76499,0.42867,349.56,0.22057,0.36766,0.90343,314.63,-0.84872,0.52879,-0.0079814,318.33
    8946 
    8947 > ui mousemode right "translate selected models"
    8948 
    8949 > view matrix models
    8950 > #11,-0.48065,-0.76499,0.42867,359.28,0.22057,0.36766,0.90343,330.7,-0.84872,0.52879,-0.0079814,345.5
    8951 
    8952 > view matrix models
    8953 > #11,-0.48065,-0.76499,0.42867,339.68,0.22057,0.36766,0.90343,398.75,-0.84872,0.52879,-0.0079814,358.46
    8954 
    8955 > ui mousemode right "rotate selected models"
    8956 
    8957 > view matrix models
    8958 > #11,-0.78957,0.55823,-0.25489,341.34,-0.49154,-0.82396,-0.28192,380.83,-0.36739,-0.097305,0.92496,363.23
    8959 
    8960 > ui mousemode right "translate selected models"
    8961 
    8962 > view matrix models
    8963 > #11,-0.78957,0.55823,-0.25489,332.99,-0.49154,-0.82396,-0.28192,351.76,-0.36739,-0.097305,0.92496,331.06
    8964 
    8965 > ui mousemode right "translate selected models"
    8966 
    8967 > ui mousemode right "rotate selected models"
    8968 
    8969 > view matrix models
    8970 > #11,-0.027563,-0.78417,0.61993,334.61,0.56547,-0.52364,-0.63722,356.14,0.82431,0.33299,0.45786,336.08
    8971 
    8972 > view matrix models
    8973 > #11,-0.088637,-0.99326,-0.074688,328.59,-0.18898,0.090391,-0.97781,353.87,0.97797,-0.072556,-0.19571,330.21
    8974 
    8975 > view matrix models
    8976 > #11,-0.048357,-0.63332,-0.77238,326.28,-0.98685,0.14969,-0.060953,356.44,0.15422,0.75928,-0.63223,328.24
    8977 
    8978 > view matrix models
    8979 > #11,0.18852,-0.98175,0.024952,330.61,-0.9579,-0.18943,-0.21575,353.63,0.21654,0.016772,-0.97613,322.04
    8980 
    8981 > ui mousemode right "translate selected models"
    8982 
    8983 > view matrix models
    8984 > #11,0.18852,-0.98175,0.024952,349.2,-0.9579,-0.18943,-0.21575,381.13,0.21654,0.016772,-0.97613,329.2
    8985 
    8986 > ui mousemode right "rotate selected models"
    8987 
    8988 > view matrix models
    8989 > #11,-0.30887,-0.57468,0.75786,353.97,0.69524,-0.68017,-0.23242,386,0.64903,0.4551,0.60962,344.1
    8990 
    8991 > view matrix models
    8992 > #11,-0.33862,-0.4259,0.83902,355.22,0.68583,-0.7222,-0.089802,386.65,0.64418,0.54502,0.53665,344.12
    8993 
    8994 > view matrix models
    8995 > #11,-0.051493,-0.83384,0.54961,352.34,0.13696,-0.55103,-0.82317,380.25,0.98924,0.032886,0.14258,340.24
    8996 
    8997 > view matrix models
    8998 > #11,-0.35337,-0.87827,-0.32215,344.97,-0.57225,0.47536,-0.66825,383.8,0.74004,-0.051788,-0.67057,333.27
    8999 
    9000 > ui mousemode right "translate selected models"
    9001 
    9002 > view matrix models
    9003 > #11,-0.35337,-0.87827,-0.32215,338.22,-0.57225,0.47536,-0.66825,359.87,0.74004,-0.051788,-0.67057,318.59
    9004 
    9005 > ui mousemode right "rotate selected models"
    9006 
    9007 > view matrix models
    9008 > #11,-0.45947,-0.83498,-0.30283,338.09,-0.55681,0.53641,-0.63422,360.51,0.69199,-0.12278,-0.71138,317.69
    9009 
    9010 > fitmap #11 inMap #1
    9011 
    9012 Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420
    9013 atoms 
    9014 average map value = 0.008332, steps = 264 
    9015 shifted from previous position = 16.8 
    9016 rotated from previous position = 45.1 degrees 
    9017 atoms outside contour = 725, contour level = 0.007615 
    9018  
    9019 Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1)
    9020 coordinates: 
    9021 Matrix rotation and translation 
    9022 -0.14490497 -0.94257009 -0.30093885 343.98346956 
    9023 0.02593039 0.30042689 -0.95345231 351.04735013 
    9024 0.98910574 -0.14596344 -0.01909214 332.12049846 
    9025 Axis 0.44762189 -0.71512095 0.53687677 
    9026 Axis point 154.78387367 0.00000000 433.32854122 
    9027 Rotation angle (degrees) 115.58090126 
    9028 Shift along axis 81.24099907 
    9029  
    9030 
    9031 > fitmap #11 inMap #1
    9032 
    9033 Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420
    9034 atoms 
    9035 average map value = 0.00833, steps = 48 
    9036 shifted from previous position = 0.0196 
    9037 rotated from previous position = 0.0437 degrees 
    9038 atoms outside contour = 726, contour level = 0.007615 
    9039  
    9040 Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1)
    9041 coordinates: 
    9042 Matrix rotation and translation 
    9043 -0.14442177 -0.94279172 -0.30047651 343.99752907 
    9044 0.02557187 0.30000257 -0.95359559 351.05991620 
    9045 0.98918575 -0.14540371 -0.01921796 332.11826612 
    9046 Axis 0.44801956 -0.71492170 0.53681042 
    9047 Axis point 154.93427764 0.00000000 433.34103574 
    9048 Rotation angle (degrees) 115.58302704 
    9049 Shift along axis 81.42181454 
    9050  
    9051 
    9052 > fitmap #11 inMap #1
    9053 
    9054 Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420
    9055 atoms 
    9056 average map value = 0.008331, steps = 44 
    9057 shifted from previous position = 0.012 
    9058 rotated from previous position = 0.0327 degrees 
    9059 atoms outside contour = 725, contour level = 0.007615 
    9060  
    9061 Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1)
    9062 coordinates: 
    9063 Matrix rotation and translation 
    9064 -0.14462707 -0.94264711 -0.30083126 343.98854183 
    9065 0.02599114 0.30030370 -0.95348946 351.05362745 
    9066 0.98914482 -0.14571934 -0.01893157 332.12042077 
    9067 Axis 0.44774036 -0.71502316 0.53690824 
    9068 Axis point 154.81133413 0.00000000 433.38296097 
    9069 Rotation angle (degrees) 115.57088802 
    9070 Shift along axis 81.32426712 
    9071  
    9072 
    9073 > fitmap #11 inMap #1
    9074 
    9075 Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420
    9076 atoms 
    9077 average map value = 0.008335, steps = 44 
    9078 shifted from previous position = 0.0501 
    9079 rotated from previous position = 0.0741 degrees 
    9080 atoms outside contour = 723, contour level = 0.007615 
    9081  
    9082 Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1)
    9083 coordinates: 
    9084 Matrix rotation and translation 
    9085 -0.14450379 -0.94228707 -0.30201614 343.95309313 
    9086 0.02651760 0.30142228 -0.95312194 351.02230471 
    9087 0.98914887 -0.14573847 -0.01856947 332.12020104 
    9088 Axis 0.44733595 -0.71537819 0.53677239 
    9089 Axis point 154.49156924 0.00000000 433.39712225 
    9090 Rotation angle (degrees) 115.51995899 
    9091 Shift along axis 81.02183476 
    9092  
    9093 
    9094 > view matrix models
    9095 > #11,0.29089,-0.90988,-0.29582,346.23,-0.40311,0.16385,-0.90036,348.56,0.86769,0.38115,-0.31912,332.6
    9096 
    9097 > view matrix models
    9098 > #11,0.273,-0.90949,-0.31353,346.03,-0.42413,0.17875,-0.88779,348.62,0.86348,0.37534,-0.33694,332.43
    9099 
    9100 > ui mousemode right "translate selected models"
    9101 
    9102 > view matrix models
    9103 > #11,0.273,-0.90949,-0.31353,347.03,-0.42413,0.17875,-0.88779,350.28,0.86348,0.37534,-0.33694,332.97
    9104 
    9105 > fitmap #11 inMap #1
    9106 
    9107 Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420
    9108 atoms 
    9109 average map value = 0.009324, steps = 76 
    9110 shifted from previous position = 5.69 
    9111 rotated from previous position = 7.45 degrees 
    9112 atoms outside contour = 645, contour level = 0.007615 
    9113  
    9114 Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1)
    9115 coordinates: 
    9116 Matrix rotation and translation 
    9117 0.17020150 -0.93893062 -0.29906646 342.80776470 
    9118 -0.36434641 0.22202517 -0.90440949 353.66700232 
    9119 0.91557804 0.26289564 -0.30430698 330.14035254 
    9120 Axis 0.65581946 -0.68241583 0.32281492 
    9121 Axis point 206.51500646 0.00000000 375.79548709 
    9122 Rotation angle (degrees) 117.13187954 
    9123 Shift along axis 90.04627202 
    9124  
    9125 
    9126 > fitmap #11 inMap #1
    9127 
    9128 Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420
    9129 atoms 
    9130 average map value = 0.009324, steps = 36 
    9131 shifted from previous position = 0.0443 
    9132 rotated from previous position = 0.0688 degrees 
    9133 atoms outside contour = 650, contour level = 0.007615 
    9134  
    9135 Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1)
    9136 coordinates: 
    9137 Matrix rotation and translation 
    9138 0.17048591 -0.93853525 -0.30014354 342.77320402 
    9139 -0.36432041 0.22297922 -0.90418522 353.65274953 
    9140 0.91553547 0.26349926 -0.30391273 330.16427787 
    9141 Axis 0.65572471 -0.68267652 0.32245600 
    9142 Axis point 206.25290908 0.00000000 375.82290352 
    9143 Rotation angle (degrees) 117.07933445 
    9144 Shift along axis 89.79788555 
    9145  
    9146 
    9147 > fitmap #11 inMap #1
    9148 
    9149 Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420
    9150 atoms 
    9151 average map value = 0.009324, steps = 44 
    9152 shifted from previous position = 0.0458 
    9153 rotated from previous position = 0.0533 degrees 
    9154 atoms outside contour = 645, contour level = 0.007615 
    9155  
    9156 Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1)
    9157 coordinates: 
    9158 Matrix rotation and translation 
    9159 0.17019889 -0.93884863 -0.29932524 342.80974553 
    9160 -0.36430887 0.22228606 -0.90436053 353.66515969 
    9161 0.91559346 0.26296800 -0.30419804 330.13951983 
    9162 Axis 0.65576329 -0.68249775 0.32275583 
    9163 Axis point 206.45362062 0.00000000 375.80586237 
    9164 Rotation angle (degrees) 117.12005919 
    9165 Shift along axis 89.98082632 
    9166  
    9167 
    9168 > fitmap #11 inMap #1
    9169 
    9170 Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420
    9171 atoms 
    9172 average map value = 0.009324, steps = 44 
    9173 shifted from previous position = 0.0414 
    9174 rotated from previous position = 0.0377 degrees 
    9175 atoms outside contour = 648, contour level = 0.007615 
    9176  
    9177 Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1)
    9178 coordinates: 
    9179 Matrix rotation and translation 
    9180 0.17027087 -0.93865053 -0.29990503 342.77744890 
    9181 -0.36418996 0.22285573 -0.90426822 353.65417232 
    9182 0.91562739 0.26319294 -0.30390126 330.16355955 
    9183 Axis 0.65566088 -0.68265831 0.32262429 
    9184 Axis point 206.28107658 0.00000000 375.83806717 
    9185 Rotation angle (degrees) 117.08985859 
    9186 Shift along axis 89.83958784 
    9187  
    9188 
    9189 > fitmap #11 inMap #1
    9190 
    9191 Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420
    9192 atoms 
    9193 average map value = 0.009323, steps = 48 
    9194 shifted from previous position = 0.0164 
    9195 rotated from previous position = 0.0444 degrees 
    9196 atoms outside contour = 647, contour level = 0.007615 
    9197  
    9198 Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1)
    9199 coordinates: 
    9200 Matrix rotation and translation 
    9201 0.17044548 -0.93839188 -0.30061441 342.76603098 
    9202 -0.36428585 0.22345574 -0.90408150 353.64712017 
    9203 0.91555675 0.26360618 -0.30375586 330.17288534 
    9204 Axis 0.65561495 -0.68283669 0.32234004 
    9205 Axis point 206.13215060 0.00000000 375.83357392 
    9206 Rotation angle (degrees) 117.06025783 
    9207 Shift along axis 89.66724627 
    9208  
    9209 
    9210 > fitmap #11 inMap #1
    9211 
    9212 Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420
    9213 atoms 
    9214 average map value = 0.009324, steps = 44 
    9215 shifted from previous position = 0.0659 
    9216 rotated from previous position = 0.116 degrees 
    9217 atoms outside contour = 647, contour level = 0.007615 
    9218  
    9219 Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1)
    9220 coordinates: 
    9221 Matrix rotation and translation 
    9222 0.16986193 -0.93907605 -0.29880280 342.81616751 
    9223 -0.36417863 0.22192805 -0.90450090 353.67028609 
    9224 0.91570785 0.26245786 -0.30429430 330.13715823 
    9225 Axis 0.65570493 -0.68242396 0.32303033 
    9226 Axis point 206.54140774 -0.00000000 375.81317869 
    9227 Rotation angle (degrees) 117.14552928 
    9228 Shift along axis 90.07748914 
    9229  
    9230 
    9231 > fitmap #11 inMap #1
    9232 
    9233 Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420
    9234 atoms 
    9235 average map value = 0.009324, steps = 48 
    9236 shifted from previous position = 0.0575 
    9237 rotated from previous position = 0.0788 degrees 
    9238 atoms outside contour = 648, contour level = 0.007615 
    9239  
    9240 Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1)
    9241 coordinates: 
    9242 Matrix rotation and translation 
    9243 0.17029394 -0.93861252 -0.30001088 342.77150957 
    9244 -0.36419912 0.22294769 -0.90424186 353.65200714 
    9245 0.91561945 0.26325060 -0.30387521 330.16831641 
    9246 Axis 0.65565190 -0.68268564 0.32258472 
    9247 Axis point 206.25375182 0.00000000 375.83811054 
    9248 Rotation angle (degrees) 117.08531880 
    9249 Shift along axis 89.81289917 
    9250  
    9251 
    9252 > fitmap #11 inMap #1
    9253 
    9254 Fit molecule CopZ1_P61924.pdb (#11) to map postprocess.mrc (#1) using 1420
    9255 atoms 
    9256 average map value = 0.009324, steps = 60 
    9257 shifted from previous position = 0.0508 
    9258 rotated from previous position = 0.056 degrees 
    9259 atoms outside contour = 645, contour level = 0.007615 
    9260  
    9261 Position of CopZ1_P61924.pdb (#11) relative to postprocess.mrc (#1)
    9262 coordinates: 
    9263 Matrix rotation and translation 
    9264 0.17018568 -0.93891614 -0.29912093 342.80979355 
    9265 -0.36427807 0.22210233 -0.90441807 353.66731607 
    9266 0.91560817 0.26288220 -0.30422792 330.13797895 
    9267 Axis 0.65579022 -0.68243579 0.32283212 
    9268 Axis point 206.49577920 0.00000000 375.80926708 
    9269 Rotation angle (degrees) 117.12736020 
    9270 Shift along axis 90.03522412 
    9271  
    9272 
    9273 > close #10
    9274 
    9275 > show sel atoms
    9276 
    9277 > select subtract #11
    9278 
    9279 Nothing selected 
    9280 
    9281 > open /fs/gpfs41/lv09/fileset01/pool/pool-
    9282 > briggs/taylor/em_data/20220715_COPI_Golph/alignments/CopZ2_Q9CTG7.pdb
    9283 
    9284 CopZ2_Q9CTG7.pdb title: 
    9285 Alphafold monomer V2.0 prediction for coatomer subunit ζ (Q9CTG7) [more
    9286 info...] 
    9287  
    9288 Chain information for CopZ2_Q9CTG7.pdb #10 
    9289 --- 
    9290 Chain | Description | UniProt 
    9291 A | coatomer subunit ζ | Q9CTG7_MOUSE 
    9292  
    9293 
    9294 > color #10 yellow
    9295 
    9296 > color #10 #ffe415ff
    9297 
    9298 > select add #10
    9299 
    9300 1463 atoms, 1486 bonds, 185 residues, 1 model selected 
    9301 
    9302 > select add #11
    9303 
    9304 2883 atoms, 2927 bonds, 362 residues, 2 models selected 
    9305 
    9306 > view orient
    9307 
    9308 > select subtract #11
    9309 
    9310 1463 atoms, 1486 bonds, 185 residues, 1 model selected 
    9311 
    9312 > view matrix models #10,1,0,0,381.07,0,1,0,383.04,0,0,1,0
    9313 
    9314 > view orient
    9315 
    9316 > view matrix models #10,1,0,0,374.85,0,1,0,378.42,0,0,1,0
    9317 
    9318 > select subtract #10
    9319 
    9320 Nothing selected 
    9321 
    9322 > select add #11
    9323 
    9324 1420 atoms, 1441 bonds, 177 residues, 1 model selected 
    9325 
    9326 > hide sel atoms
    9327 
    9328 > select add #10
    9329 
    9330 2883 atoms, 2927 bonds, 362 residues, 2 models selected 
    9331 
    9332 > select subtract #11
    9333 
    9334 1463 atoms, 1486 bonds, 185 residues, 1 model selected 
    9335 
    9336 > view matrix models #10,1,0,0,287.93,0,1,0,328.63,0,0,1,0
    9337 
    9338 > view matrix models #10,1,0,0,343.95,0,1,0,332.78,0,0,1,0
    9339 
    9340 > view matrix models #10,1,0,0,442.15,0,1,0,335.46,0,0,1,301.19
    9341 
    9342 > view matrix models #10,1,0,0,352.81,0,1,0,346.86,0,0,1,274.44
    9343 
    9344 > view matrix models #10,1,0,0,352.92,0,1,0,347.76,0,0,1,274.36
    9345 
    9346 > ui mousemode right "rotate selected models"
    9347 
    9348 > view matrix models
    9349 > #10,0.049529,-0.98686,-0.15383,367.71,0.92397,-0.013207,0.38223,361.26,-0.37924,-0.16106,0.91117,276.98
    9350 
    9351 > view matrix models
    9352 > #10,0.24183,0.79508,0.5562,349,0.27062,0.49521,-0.82555,347.26,-0.93182,0.35016,-0.09541,264.17
    9353 
    9354 > view matrix models
    9355 > #10,-0.88773,0.42149,0.18513,354.56,-0.46024,-0.8036,-0.37738,370.13,-0.01029,-0.42022,0.90737,279.24
    9356 
    9357 > view matrix models
    9358 > #10,0.5523,0.81779,0.16183,344.72,-0.71469,0.36455,0.59692,362.94,0.42916,-0.44534,0.78581,277.29
    9359 
    9360 > view matrix models
    9361 > #10,0.82717,-0.023948,-0.56144,349.45,0.41989,0.69033,0.58918,355.09,0.37347,-0.7231,0.58108,279.56
    9362 
    9363 > fitmap #10 inMap #1
    9364 
    9365 Fit molecule CopZ2_Q9CTG7.pdb (#10) to map postprocess.mrc (#1) using 1463
    9366 atoms 
    9367 average map value = 0.006114, steps = 140 
    9368 shifted from previous position = 23.5 
    9369 rotated from previous position = 38.2 degrees 
    9370 atoms outside contour = 1092, contour level = 0.007615 
    9371  
    9372 Position of CopZ2_Q9CTG7.pdb (#10) relative to postprocess.mrc (#1)
    9373 coordinates: 
    9374 Matrix rotation and translation 
    9375 0.88402019 -0.44961589 -0.12788222 332.64950901 
    9376 0.37717743 0.52448779 0.76331498 348.95649289 
    9377 -0.27612588 -0.72302014 0.63324276 291.78912770 
    9378 Axis -0.87059401 0.08683105 0.48427929 
    9379 Axis point 0.00000000 548.10741163 -129.13457334 
    9380 Rotation angle (degrees) 58.60901243 
    9381 Shift along axis -117.99497945 
    9382  
    9383 
    9384 > view matrix models
    9385 > #10,-0.26989,-0.4414,-0.85576,330.49,0.71571,-0.6865,0.12838,359.06,-0.64414,-0.57783,0.50119,289.98
    9386 
    9387 > view matrix models
    9388 > #10,-0.51279,0.85245,-0.10185,319.91,-0.65826,-0.46656,-0.59078,354.84,-0.55112,-0.2359,0.80038,287.47
    9389 
    9390 > view matrix models
    9391 > #10,0.54499,0.69903,0.46297,323.03,-0.80542,0.58993,0.057372,346.3,-0.23302,-0.40415,0.88451,289.37
    9392 
    9393 > ui mousemode right "translate selected models"
    9394 
    9395 > view matrix models
    9396 > #10,0.54499,0.69903,0.46297,343.94,-0.80542,0.58993,0.057372,355.86,-0.23302,-0.40415,0.88451,294.19
    9397 
    9398 > view matrix models
    9399 > #10,0.54499,0.69903,0.46297,341.13,-0.80542,0.58993,0.057372,354.09,-0.23302,-0.40415,0.88451,293.59
    9400 
    9401 > fitmap #10 inMap #1
    9402 
    9403 Fit molecule CopZ2_Q9CTG7.pdb (#10) to map postprocess.mrc (#1) using 1463
    9404 atoms 
    9405 average map value = 0.006546, steps = 212 
    9406 shifted from previous position = 30.4 
    9407 rotated from previous position = 20.4 degrees 
    9408 atoms outside contour = 1021, contour level = 0.007615 
    9409  
    9410 Position of CopZ2_Q9CTG7.pdb (#10) relative to postprocess.mrc (#1)
    9411 coordinates: 
    9412 Matrix rotation and translation 
    9413 0.73669002 0.63643510 0.22855680 312.27083288 
    9414 -0.67533922 0.67507429 0.29697081 348.51516327 
    9415 0.03470983 -0.37312879 0.92713006 296.97660948 
    9416 Axis -0.45102704 0.13047348 -0.88292201 
    9417 Axis point 583.20033603 4.03637851 0.00000000 
    9418 Rotation angle (degrees) 47.97558826 
    9419 Shift along axis -357.57779045 
    9420  
    9421 
    9422 > view matrix models
    9423 > #10,0.73669,0.63644,0.22856,383.16,-0.67534,0.67507,0.29697,346.7,0.03471,-0.37313,0.92713,317.35
    9424 
    9425 > ui mousemode right "rotate selected models"
    9426 
    9427 > view matrix models
    9428 > #10,-0.8917,-0.024931,-0.45195,391.69,-0.25601,0.85121,0.45815,344.32,0.37328,0.52423,-0.76541,291.43
    9429 
    9430 > view matrix models
    9431 > #10,-0.97734,-0.20479,-0.053647,397.39,-0.20905,0.89367,0.39706,343.14,-0.033368,0.39927,-0.91623,293.17
    9432 
    9433 > view matrix models
    9434 > #10,-0.97068,-0.24034,0.0048746,398.29,-0.20106,0.82284,0.53151,345.09,-0.13175,0.51494,-0.84704,292.48
    9435 
    9436 > ui mousemode right "translate selected models"
    9437 
    9438 > view matrix models
    9439 > #10,-0.97068,-0.24034,0.0048746,348.48,-0.20106,0.82284,0.53151,350.59,-0.13175,0.51494,-0.84704,277.67
    9440 
    9441 > ui mousemode right "translate selected models"
    9442 
    9443 > view matrix models
    9444 > #10,-0.97068,-0.24034,0.0048746,337.99,-0.20106,0.82284,0.53151,341.33,-0.13175,0.51494,-0.84704,377.83
    9445 
    9446 > view matrix models
    9447 > #10,-0.97068,-0.24034,0.0048746,336.87,-0.20106,0.82284,0.53151,331.98,-0.13175,0.51494,-0.84704,365.23
    9448 
    9449 > view matrix models
    9450 > #10,-0.97068,-0.24034,0.0048746,341.4,-0.20106,0.82284,0.53151,354.03,-0.13175,0.51494,-0.84704,372.18
    9451 
    9452 > ui mousemode right "rotate selected models"
    9453 
    9454 > view matrix models
    9455 > #10,-0.73008,-0.61764,-0.29242,343.37,-0.66372,0.53902,0.5186,359.11,-0.16269,0.5727,-0.80346,371.84
    9456 
    9457 > view matrix models
    9458 > #10,-0.71629,-0.64127,-0.27513,343.78,-0.64312,0.45368,0.6169,360.93,-0.27078,0.61882,-0.73739,372.07
    9459 
    9460 > view matrix models
    9461 > #10,-0.69961,-0.66511,-0.2611,344.15,-0.60849,0.36304,0.70565,362.7,-0.37454,0.65256,-0.6587,372.55
    9462 
    9463 > view matrix models
    9464 > #10,-0.74234,-0.5056,-0.43965,340.8,-0.49638,0.85574,-0.14598,349.3,0.45004,0.10987,-0.88623,375.45
    9465 
    9466 > ui mousemode right "translate selected models"
    9467 
    9468 > view matrix models
    9469 > #10,-0.74234,-0.5056,-0.43965,345.65,-0.49638,0.85574,-0.14598,353.04,0.45004,0.10987,-0.88623,327.68
    9470 
    9471 > fitmap #10 inMap #1
    9472 
    9473 Fit molecule CopZ2_Q9CTG7.pdb (#10) to map postprocess.mrc (#1) using 1463
    9474 atoms 
    9475 average map value = 0.007804, steps = 112 
    9476 shifted from previous position = 6.03 
    9477 rotated from previous position = 23.2 degrees 
    9478 atoms outside contour = 796, contour level = 0.007615 
    9479  
    9480 Position of CopZ2_Q9CTG7.pdb (#10) relative to postprocess.mrc (#1)
    9481 coordinates: 
    9482 Matrix rotation and translation 
    9483 -0.85055957 -0.31374086 -0.42203688 342.67631914 
    9484 -0.44282855 0.86016552 0.25301816 354.86177316 
    9485 0.28363943 0.40209699 -0.87055541 331.35797852 
    9486 Axis 0.20346164 -0.96310161 -0.17617790 
    9487 Axis point 181.91062897 0.00000000 173.60700899 
    9488 Rotation angle (degrees) 158.50893683 
    9489 Shift along axis -330.42441065 
    9490  
    9491 
    9492 > show #!1 models
    9493 
    9494 > hide #!1 models
    9495 
    9496 > select subtract #10
    9497 
    9498 Nothing selected 
    9499 
    9500 > select add #10
    9501 
    9502 1463 atoms, 1486 bonds, 185 residues, 1 model selected 
    9503 
    9504 > hide #11 models
    9505 
    9506 > show #11 models
    9507 
    9508 > hide #11 models
    9509 
    9510 > show #11 models
    9511 
    9512 > view matrix models
    9513 > #10,-0.85056,-0.31374,-0.42204,333.72,-0.44283,0.86017,0.25302,310.44,0.28364,0.4021,-0.87056,315.16
    9514 
    9515 > view matrix models
    9516 > #10,-0.85056,-0.31374,-0.42204,336.02,-0.44283,0.86017,0.25302,319.56,0.28364,0.4021,-0.87056,312.93
    9517 
    9518 > ui mousemode right "rotate selected models"
    9519 
    9520 > view matrix models
    9521 > #10,-0.67283,-0.69984,-0.23984,341.99,-0.66918,0.71396,-0.20605,318.66,0.31544,0.021855,-0.94869,317.26
    9522 
    9523 > view matrix models
    9524 > #10,-0.73416,0.48102,0.4792,332.08,0.52731,0.84854,-0.043894,314.45,-0.42773,0.22046,-0.87661,317.47
    9525 
    9526 > view matrix models
    9527 > #10,-0.76341,0.50277,-0.4055,325.08,0.44947,0.86436,0.22552,316.55,0.46388,-0.010097,-0.88584,317.71
    9528 
    9529 > view matrix models
    9530 > #10,-0.87394,0.32299,-0.36318,328.12,0.39525,0.90716,-0.14434,313.31,0.28284,-0.26969,-0.92047,321.43
    9531 
    9532 > ui mousemode right "translate selected models"
    9533 
    9534 > view matrix models
    9535 > #10,-0.87394,0.32299,-0.36318,341.44,0.39525,0.90716,-0.14434,354.81,0.28284,-0.26969,-0.92047,330.58
    9536 
    9537 > fitmap #10 inMap #1
    9538 
    9539 Fit molecule CopZ2_Q9CTG7.pdb (#10) to map postprocess.mrc (#1) using 1463
    9540 atoms 
    9541 average map value = 0.009525, steps = 80 
    9542 shifted from previous position = 1.71 
    9543 rotated from previous position = 9.08 degrees 
    9544 atoms outside contour = 688, contour level = 0.007615 
    9545  
    9546 Position of CopZ2_Q9CTG7.pdb (#10) relative to postprocess.mrc (#1)
    9547 coordinates: 
    9548 Matrix rotation and translation 
    9549 -0.82108011 0.27510216 -0.50014626 341.74342227 
    9550 0.40712094 0.89639270 -0.17530741 354.41739312 
    9551 0.40010001 -0.34756144 -0.84801006 329.40214578 
    9552 Axis -0.18601212 -0.97214979 0.14256325 
    9553 Axis point 88.87915642 0.00000000 225.35054236 
    9554 Rotation angle (degrees) 152.41795576 
    9555 Shift along axis -361.15457305 
    9556  
    9557 
    9558 > fitmap #10 inMap #1
    9559 
    9560 Fit molecule CopZ2_Q9CTG7.pdb (#10) to map postprocess.mrc (#1) using 1463
    9561 atoms 
    9562 average map value = 0.009525, steps = 40 
    9563 shifted from previous position = 0.041 
    9564 rotated from previous position = 0.0584 degrees 
    9565 atoms outside contour = 688, contour level = 0.007615 
    9566  
    9567 Position of CopZ2_Q9CTG7.pdb (#10) relative to postprocess.mrc (#1)
    9568 coordinates: 
    9569 Matrix rotation and translation 
    9570 -0.82147696 0.27547367 -0.49928938 341.77800489 
    9571 0.40709792 0.89642205 -0.17521079 354.42904198 
    9572 0.39930805 -0.34719129 -0.84853481 329.39090309 
    9573 Axis -0.18606033 -0.97216447 0.14240015 
    9574 Axis point 88.99506313 0.00000000 225.24288376 
    9575 Rotation angle (degrees) 152.47321208 
    9576 Shift along axis -361.24933356 
    9577  
    9578 
    9579 > fitmap #10 inMap #1
    9580 
    9581 Fit molecule CopZ2_Q9CTG7.pdb (#10) to map postprocess.mrc (#1) using 1463
    9582 atoms 
    9583 average map value = 0.009525, steps = 28 
    9584 shifted from previous position = 0.0496 
    9585 rotated from previous position = 0.0357 degrees 
    9586 atoms outside contour = 687, contour level = 0.007615 
    9587  
    9588 Position of CopZ2_Q9CTG7.pdb (#10) relative to postprocess.mrc (#1)
    9589 coordinates: 
    9590 Matrix rotation and translation 
    9591 -0.82127964 0.27516259 -0.49978528 341.73563276 
    9592 0.40703624 0.89642670 -0.17533027 354.41459269 
    9593 0.39977654 -0.34742590 -0.84821813 329.40793045 
    9594 Axis -0.18598478 -0.97216185 0.14251664 
    9595 Axis point 88.92474209 0.00000000 225.31390781 
    9596 Rotation angle (degrees) 152.44108053 
    9597 Shift along axis -361.15986104 
    9598  
    9599 
    9600 > select subtract #10
    9601 
    9602 Nothing selected 
    9603 
    9604 > select add #10
    9605 
    9606 1463 atoms, 1486 bonds, 185 residues, 1 model selected 
    9607 
    9608 > select add #11
    9609 
    9610 2883 atoms, 2927 bonds, 362 residues, 2 models selected 
    9611 
    9612 > select subtract #11
    9613 
    9614 1463 atoms, 1486 bonds, 185 residues, 1 model selected 
    9615 
    9616 > select subtract #10
    9617 
    9618 Nothing selected 
    9619 
    9620 > show #!1 models
    9621 
    9622 > hide #10 models
    9623 
    9624 > hide #11 models
    9625 
    9626 > show #11 models
    9627 
    9628 > show #10 models
    9629 
    9630 > select add #10
    9631 
    9632 1463 atoms, 1486 bonds, 185 residues, 1 model selected 
    9633 
    9634 > select add #11
    9635 
    9636 2883 atoms, 2927 bonds, 362 residues, 2 models selected 
    9637 
    9638 > show sel atoms
    9639 
    9640 > select subtract #10
    9641 
    9642 1420 atoms, 1441 bonds, 177 residues, 1 model selected 
    9643 
    9644 > select subtract #11
    9645 
    9646 Nothing selected 
    9647 
    9648 > hide #10 models
    9649 
    9650 > hide #11 models
    9651 
    9652 > open /fs/gpfs41/lv09/fileset01/pool/pool-
    9653 > briggs/taylor/em_data/20220715_COPI_Golph/alignments/CopBprime_O55029.pdb
    9654 
    9655 CopBprime_O55029.pdb title: 
    9656 Alphafold monomer V2.0 prediction for coatomer subunit β' (O55029) [more
    9657 info...] 
    9658  
    9659 Chain information for CopBprime_O55029.pdb #14 
    9660 --- 
    9661 Chain | Description | UniProt 
    9662 A | coatomer subunit β' | COPB2_MOUSE 
    9663  
    9664 
    9665 > color #14 cyan
    9666 
    9667 > view orient
    9668 
    9669 > show #4 models
    9670 
    9671 > select add #14
    9672 
    9673 7214 atoms, 7373 bonds, 905 residues, 1 model selected 
    9674 
    9675 > view matrix models #14,1,0,0,228.73,0,1,0,248.76,0,0,1,0
    9676 
    9677 > view matrix models #14,1,0,0,235.96,0,1,0,297.18,0,0,1,356.32
    9678 
    9679 > hide #!1 models
    9680 
    9681 > view matrix models #14,1,0,0,301.49,0,1,0,292.72,0,0,1,337.83
    9682 
    9683 > ui mousemode right "rotate selected models"
    9684 
    9685 > view matrix models
    9686 > #14,0.21105,0.30599,-0.92835,315.42,-0.013511,-0.94873,-0.31578,302.41,-0.97738,0.079188,-0.19609,356.54
    9687 
    9688 > ui mousemode right "translate selected models"
    9689 
    9690 > view matrix models
    9691 > #14,0.21105,0.30599,-0.92835,308.04,-0.013511,-0.94873,-0.31578,302.09,-0.97738,0.079188,-0.19609,359.62
    9692 
    9693 > ui mousemode right "rotate selected models"
    9694 
    9695 > view matrix models
    9696 > #14,0.074611,0.028571,-0.9968,308.5,-0.41122,-0.90976,-0.056856,291.17,-0.90848,0.41415,-0.056129,356.57
    9697 
    9698 > view matrix models
    9699 > #14,0.18837,-0.019388,-0.98191,309.45,-0.35781,-0.93244,-0.050231,291.62,-0.9146,0.3608,-0.18258,359.7
    9700 
    9701 > ui mousemode right "translate selected models"
    9702 
    9703 > view matrix models
    9704 > #14,0.18837,-0.019388,-0.98191,300.67,-0.35781,-0.93244,-0.050231,285.78,-0.9146,0.3608,-0.18258,358.06
    9705 
    9706 > ui mousemode right "rotate selected models"
    9707 
    9708 > view matrix models
    9709 > #14,0.13765,0.068029,-0.98814,300.17,-0.0062466,-0.99756,-0.069548,290.26,-0.99046,0.015746,-0.13689,356.43
    9710 
    9711 > view matrix models
    9712 > #14,0.086001,-0.061835,-0.99437,299.88,0.12356,-0.9897,0.072231,288.18,-0.9886,-0.12908,-0.077476,355.12
    9713 
    9714 > fitmap #14 inMap #1
    9715 
    9716 Fit molecule CopBprime_O55029.pdb (#14) to map postprocess.mrc (#1) using 7214
    9717 atoms 
    9718 average map value = 0.008523, steps = 108 
    9719 shifted from previous position = 4.16 
    9720 rotated from previous position = 18.4 degrees 
    9721 atoms outside contour = 3124, contour level = 0.007615 
    9722  
    9723 Position of CopBprime_O55029.pdb (#14) relative to postprocess.mrc (#1)
    9724 coordinates: 
    9725 Matrix rotation and translation 
    9726 -0.17477003 -0.17847582 -0.96829841 300.34041736 
    9727 -0.01134919 -0.98300368 0.18323471 289.60827762 
    9728 -0.98454387 0.04301334 0.16977402 350.79324012 
    9729 Axis -0.64097385 0.07426053 0.76396197 
    9730 Axis point 287.19131626 140.76950562 0.00000000 
    9731 Rotation angle (degrees) 173.72033654 
    9732 Shift along axis 96.98880360 
    9733  
    9734 
    9735 > fitmap #14 inMap #1
    9736 
    9737 Fit molecule CopBprime_O55029.pdb (#14) to map postprocess.mrc (#1) using 7214
    9738 atoms 
    9739 average map value = 0.008523, steps = 48 
    9740 shifted from previous position = 0.0108 
    9741 rotated from previous position = 0.0055 degrees 
    9742 atoms outside contour = 3124, contour level = 0.007615 
    9743  
    9744 Position of CopBprime_O55029.pdb (#14) relative to postprocess.mrc (#1)
    9745 coordinates: 
    9746 Matrix rotation and translation 
    9747 -0.17471715 -0.17850967 -0.96830171 300.34609995 
    9748 -0.01127211 -0.98300107 0.18325345 289.59931761 
    9749 -0.98455414 0.04293233 0.16973497 350.79135670 
    9750 Axis -0.64099264 0.07424175 0.76394803 
    9751 Axis point 287.19342385 140.77805503 0.00000000 
    9752 Rotation angle (degrees) 173.71603635 
    9753 Shift along axis 96.96708375 
    9754  
    9755 
    9756 > fitmap #14 inMap #1
    9757 
    9758 Fit molecule CopBprime_O55029.pdb (#14) to map postprocess.mrc (#1) using 7214
    9759 atoms 
    9760 average map value = 0.008522, steps = 44 
    9761 shifted from previous position = 0.0494 
    9762 rotated from previous position = 0.0198 degrees 
    9763 atoms outside contour = 3123, contour level = 0.007615 
    9764  
    9765 Position of CopBprime_O55029.pdb (#14) relative to postprocess.mrc (#1)
    9766 coordinates: 
    9767 Matrix rotation and translation 
    9768 -0.17494710 -0.17852356 -0.96825763 300.31865683 
    9769 -0.01101722 -0.98300764 0.18323372 289.63800088 
    9770 -0.98451619 0.04272372 0.17000751 350.80696897 
    9771 Axis -0.64089853 0.07415902 0.76403502 
    9772 Axis point 287.13230492 140.83588199 0.00000000 
    9773 Rotation angle (degrees) 173.70661595 
    9774 Shift along axis 97.03429488 
    9775  
    9776 
    9777 > show sel atoms
    9778 
    9779 > close #4
    9780 
    9781 > select subtract #14
    9782 
    9783 Nothing selected 
    9784 
    9785 > hide #14 models
    9786 
    9787 > show #3 models
    9788 
    9789 > hide #3 atoms
    9790 
    9791 > open /fs/gpfs41/lv09/fileset01/pool/pool-
    9792 > briggs/taylor/em_data/20220715_COPI_Golph/alignments/CopA-F8WHL2.pdb
    9793 
    9794 QXcbConnection: XCB error: 3 (BadWindow), sequence: 30554, resource id:
    9795 16942318, major code: 40 (TranslateCoords), minor code: 0 
    9796 
    9797 > view orient
    9798 
    9799 > open /fs/gpfs41/lv09/fileset01/pool/pool-
    9800 > briggs/taylor/em_data/20220715_COPI_Golph/alignments/CopA-F8WHL2.pdb
    9801 
    9802 QXcbConnection: XCB error: 3 (BadWindow), sequence: 32143, resource id:
    9803 16942568, major code: 40 (TranslateCoords), minor code: 0 
    9804 
    9805 > hide #3 models
    9806 
    9807 > open "/fs/gpfs41/lv09/fileset01/pool/pool-
    9808 > briggs/taylor/em_data/20220715_COPI_Golph/alignments/CopB_ Q9JIF7.pdb"
    9809 
    9810 CopB_ Q9JIF7.pdb title: 
    9811 Alphafold monomer V2.0 prediction for coatomer subunit β (Q9JIF7) [more
    9812 info...] 
    9813  
    9814 Chain information for CopB_ Q9JIF7.pdb #4 
    9815 --- 
    9816 Chain | Description | UniProt 
    9817 A | coatomer subunit β | COPB_MOUSE 
    9818  
    9819 
    9820 > color #4 #005500ff
    9821 
    9822 > view orient
    9823 
    9824 > show #5 models
    9825 
    9826 > select add #5
    9827 
    9828 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    9829 
    9830 > select add #4
    9831 
    9832 15002 atoms, 15238 bonds, 1906 residues, 2 models selected 
    9833 
    9834 > view orient
    9835 
    9836 > select subtract #5
    9837 
    9838 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    9839 
    9840 > show #!1 models
    9841 
    9842 > ui mousemode right "translate selected models"
    9843 
    9844 > view matrix models #4,1,0,0,283.85,0,1,0,328.89,0,0,1,0
    9845 
    9846 > view matrix models #4,1,0,0,347.13,0,1,0,311.6,0,0,1,341.24
    9847 
    9848 > view orient
    9849 
    9850 > hide #!1 models
    9851 
    9852 > view orient
    9853 
    9854 > view matrix models #4,1,0,0,289.86,0,1,0,314.18,0,0,1,310.57
    9855 
    9856 > select subtract #4
    9857 
    9858 Nothing selected 
    9859 
    9860 > select add #5
    9861 
    9862 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    9863 
    9864 > hide sel atoms
    9865 
    9866 > select add #4
    9867 
    9868 15002 atoms, 15238 bonds, 1906 residues, 2 models selected 
    9869 
    9870 > select subtract #5
    9871 
    9872 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    9873 
    9874 > ui mousemode right "rotate selected models"
    9875 
    9876 > view matrix models
    9877 > #4,-0.28068,-0.70115,0.65544,293.98,-0.1319,0.70459,0.69724,311.51,-0.9507,0.10925,-0.29025,322.36
    9878 
    9879 > ui mousemode right "translate selected models"
    9880 
    9881 > view matrix models
    9882 > #4,-0.28068,-0.70115,0.65544,299.54,-0.1319,0.70459,0.69724,319.17,-0.9507,0.10925,-0.29025,324.3
    9883 
    9884 > ui mousemode right "rotate selected models"
    9885 
    9886 > view matrix models
    9887 > #4,0.65201,-0.54033,0.53191,295.35,-0.25785,0.5017,0.82572,319.53,-0.71301,-0.67553,0.18779,322.32
    9888 
    9889 > ui mousemode right "translate selected models"
    9890 
    9891 > view matrix models
    9892 > #4,0.65201,-0.54033,0.53191,291.14,-0.25785,0.5017,0.82572,325.2,-0.71301,-0.67553,0.18779,351.76
    9893 
    9894 > ui mousemode right "rotate selected models"
    9895 
    9896 > view matrix models
    9897 > #4,0.4548,-0.87158,0.18304,294.92,-0.12085,0.14322,0.98228,324.51,-0.88236,-0.46886,-0.040194,353.38
    9898 
    9899 > ui mousemode right "translate selected models"
    9900 
    9901 > view matrix models
    9902 > #4,0.4548,-0.87158,0.18304,276.95,-0.12085,0.14322,0.98228,324.55,-0.88236,-0.46886,-0.040194,336.28
    9903 
    9904 > ui mousemode right "rotate selected models"
    9905 
    9906 > view matrix models
    9907 > #4,-0.069656,-0.65121,0.7557,275.62,-0.1579,0.75518,0.63621,325.22,-0.98499,-0.075011,-0.15543,336.47
    9908 
    9909 > fitmap #4 inMap #1
    9910 
    9911 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501
    9912 atoms 
    9913 average map value = 0.006862, steps = 92 
    9914 shifted from previous position = 13.5 
    9915 rotated from previous position = 14.7 degrees 
    9916 atoms outside contour = 4266, contour level = 0.007615 
    9917  
    9918 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    9919 coordinates: 
    9920 Matrix rotation and translation 
    9921 -0.02361329 -0.71170813 0.70207831 283.50221234 
    9922 0.07555118 0.69899545 0.71112403 323.06318360 
    9923 -0.99686229 0.06983482 0.03726481 346.61824676 
    9924 Axis -0.32400626 0.85837621 0.39775650 
    9925 Axis point 312.61014964 -0.00000000 -97.23838407 
    9926 Rotation angle (degrees) 98.26064659 
    9927 Shift along axis 323.32291623 
    9928  
    9929 
    9930 > view matrix models
    9931 > #4,-0.039282,-0.61847,0.78483,282.87,-0.17399,0.77767,0.60412,324.69,-0.98396,-0.11282,-0.13815,348.02
    9932 
    9933 > ui mousemode right "translate selected models"
    9934 
    9935 > view matrix models
    9936 > #4,-0.039282,-0.61847,0.78483,282.43,-0.17399,0.77767,0.60412,325.87,-0.98396,-0.11282,-0.13815,349.87
    9937 
    9938 > view matrix models
    9939 > #4,-0.039282,-0.61847,0.78483,283.43,-0.17399,0.77767,0.60412,316.45,-0.98396,-0.11282,-0.13815,352.4
    9940 
    9941 > view matrix models
    9942 > #4,-0.039282,-0.61847,0.78483,280.48,-0.17399,0.77767,0.60412,321.91,-0.98396,-0.11282,-0.13815,349.33
    9943 
    9944 > fitmap #4 inMap #1
    9945 
    9946 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501
    9947 atoms 
    9948 average map value = 0.007081, steps = 76 
    9949 shifted from previous position = 5.23 
    9950 rotated from previous position = 9.83 degrees 
    9951 atoms outside contour = 4196, contour level = 0.007615 
    9952  
    9953 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    9954 coordinates: 
    9955 Matrix rotation and translation 
    9956 -0.01660204 -0.71696194 0.69691459 284.11343250 
    9957 -0.07144030 0.69607980 0.71440128 317.58202257 
    9958 -0.99730670 -0.03792727 -0.06277633 348.65007309 
    9959 Axis -0.38326875 0.86310970 0.32885668 
    9960 Axis point 335.00417014 0.00000000 -72.91250391 
    9961 Rotation angle (degrees) 101.04905018 
    9962 Shift along axis 279.87223028 
    9963  
    9964 
    9965 > fitmap #4 inMap #1
    9966 
    9967 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501
    9968 atoms 
    9969 average map value = 0.007082, steps = 48 
    9970 shifted from previous position = 0.0612 
    9971 rotated from previous position = 0.0384 degrees 
    9972 atoms outside contour = 4200, contour level = 0.007615 
    9973  
    9974 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    9975 coordinates: 
    9976 Matrix rotation and translation 
    9977 -0.01692030 -0.71693318 0.69693652 284.05349358 
    9978 -0.07202636 0.69609938 0.71432336 317.59170809 
    9979 -0.99725920 -0.03811123 -0.06341630 348.64710676 
    9980 Axis -0.38335861 0.86317737 0.32857419 
    9981 Axis point 334.96570898 0.00000000 -72.72373614 
    9982 Rotation angle (degrees) 101.07644974 
    9983 Shift along axis 279.80006421 
    9984  
    9985 
    9986 > view matrix models
    9987 > #4,-0.01692,-0.71693,0.69694,284.45,-0.072026,0.6961,0.71432,329.79,-0.99726,-0.038111,-0.063416,351.11
    9988 
    9989 > view matrix models
    9990 > #4,-0.01692,-0.71693,0.69694,284.34,-0.072026,0.6961,0.71432,325.54,-0.99726,-0.038111,-0.063416,349.71
    9991 
    9992 > view matrix models
    9993 > #4,-0.01692,-0.71693,0.69694,284.37,-0.072026,0.6961,0.71432,329.68,-0.99726,-0.038111,-0.063416,352.5
    9994 
    9995 > fitmap #4 inMap #1
    9996 
    9997 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501
    9998 atoms 
    9999 average map value = 0.007082, steps = 100 
    10000 shifted from previous position = 12.7 
    10001 rotated from previous position = 0.0636 degrees 
    10002 atoms outside contour = 4200, contour level = 0.007615 
    10003  
    10004 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10005 coordinates: 
    10006 Matrix rotation and translation 
    10007 -0.01691113 -0.71768668 0.69616079 284.06387498 
    10008 -0.07179888 0.69533455 0.71509075 317.57056123 
    10009 -0.99727576 -0.03789058 -0.06328799 348.63805779 
    10010 Axis -0.38366119 0.86284462 0.32909459 
    10011 Axis point 334.98821277 0.00000000 -72.89333153 
    10012 Rotation angle (degrees) 101.09476358 
    10013 Shift along axis 279.76466456 
    10014  
    10015 
    10016 > fitmap #4 inMap #1
    10017 
    10018 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501
    10019 atoms 
    10020 average map value = 0.007082, steps = 48 
    10021 shifted from previous position = 0.0664 
    10022 rotated from previous position = 0.0489 degrees 
    10023 atoms outside contour = 4201, contour level = 0.007615 
    10024  
    10025 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10026 coordinates: 
    10027 Matrix rotation and translation 
    10028 -0.01688880 -0.71709481 0.69677098 284.11645596 
    10029 -0.07170364 0.69594474 0.71450647 317.57357730 
    10030 -0.99728299 -0.03789386 -0.06317198 348.67352273 
    10031 Axis -0.38333652 0.86309472 0.32881698 
    10032 Axis point 334.99021187 0.00000000 -72.82036243 
    10033 Rotation angle (degrees) 101.07291229 
    10034 Shift along axis 279.83364008 
    10035  
    10036 
    10037 > fitmap #4 inMap #1
    10038 
    10039 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501
    10040 atoms 
    10041 average map value = 0.007082, steps = 60 
    10042 shifted from previous position = 0.0629 
    10043 rotated from previous position = 0.0223 degrees 
    10044 atoms outside contour = 4198, contour level = 0.007615 
    10045  
    10046 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10047 coordinates: 
    10048 Matrix rotation and translation 
    10049 -0.01680257 -0.71727840 0.69658407 284.06435287 
    10050 -0.07198223 0.69574245 0.71467545 317.58085384 
    10051 -0.99726437 -0.03813329 -0.06332156 348.64131381 
    10052 Axis -0.38355477 0.86301288 0.32877729 
    10053 Axis point 335.01079253 0.00000000 -72.81676274 
    10054 Rotation angle (degrees) 101.08066674 
    10055 Shift along axis 279.74747890 
    10056  
    10057 
    10058 > ui mousemode right "translate selected models"
    10059 
    10060 > select subtract #4
    10061 
    10062 Nothing selected 
    10063 
    10064 > select add #4
    10065 
    10066 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    10067 
    10068 > show #!1 models
    10069 
    10070 > fitmap #5 inMap #1
    10071 
    10072 Fit molecule bcop Q9JIF7 (#5) to map postprocess.mrc (#1) using 7501 atoms 
    10073 average map value = 0.008654, steps = 64 
    10074 shifted from previous position = 0.23 
    10075 rotated from previous position = 0.455 degrees 
    10076 atoms outside contour = 3206, contour level = 0.007615 
    10077  
    10078 Position of bcop Q9JIF7 (#5) relative to postprocess.mrc (#1) coordinates: 
    10079 Matrix rotation and translation 
    10080 0.04829043 -0.74196257 0.66869990 284.94471830 
    10081 -0.15903620 0.65522873 0.73850036 314.23275652 
    10082 -0.98609102 -0.14200999 -0.08635763 347.42829540 
    10083 Axis -0.44854959 0.84298361 0.29695436 
    10084 Axis point 360.97684873 0.00000000 -73.52227939 
    10085 Rotation angle (degrees) 101.03562095 
    10086 Shift along axis 240.25157323 
    10087  
    10088 
    10089 > fitmap #5 inMap #1
    10090 
    10091 Fit molecule bcop Q9JIF7 (#5) to map postprocess.mrc (#1) using 7501 atoms 
    10092 average map value = 0.008654, steps = 48 
    10093 shifted from previous position = 0.00691 
    10094 rotated from previous position = 0.0175 degrees 
    10095 atoms outside contour = 3205, contour level = 0.007615 
    10096  
    10097 Position of bcop Q9JIF7 (#5) relative to postprocess.mrc (#1) coordinates: 
    10098 Matrix rotation and translation 
    10099 0.04856677 -0.74202042 0.66861569 284.94379926 
    10100 -0.15895151 0.65513306 0.73860346 314.23632504 
    10101 -0.98609110 -0.14214906 -0.08612757 347.43381820 
    10102 Axis -0.44865466 0.84290638 0.29701486 
    10103 Axis point 361.04538475 0.00000000 -73.60071018 
    10104 Rotation angle (degrees) 101.02363291 
    10105 Shift along axis 240.22344619 
    10106  
    10107 
    10108 > fitmap #5 inMap #1
    10109 
    10110 Fit molecule bcop Q9JIF7 (#5) to map postprocess.mrc (#1) using 7501 atoms 
    10111 average map value = 0.008653, steps = 60 
    10112 shifted from previous position = 0.0131 
    10113 rotated from previous position = 0.0259 degrees 
    10114 atoms outside contour = 3204, contour level = 0.007615 
    10115  
    10116 Position of bcop Q9JIF7 (#5) relative to postprocess.mrc (#1) coordinates: 
    10117 Matrix rotation and translation 
    10118 0.04830079 -0.74187618 0.66879500 284.95295438 
    10119 -0.15868386 0.65537318 0.73844797 314.24162957 
    10120 -0.98614727 -0.14179460 -0.08606873 347.42930560 
    10121 Axis -0.44839342 0.84302357 0.29707675 
    10122 Axis point 360.94600410 0.00000000 -73.58702601 
    10123 Rotation angle (degrees) 101.02267014 
    10124 Shift along axis 240.35523879 
    10125  
    10126 
    10127 > fitmap #5 inMap #1
    10128 
    10129 Fit molecule bcop Q9JIF7 (#5) to map postprocess.mrc (#1) using 7501 atoms 
    10130 average map value = 0.008654, steps = 48 
    10131 shifted from previous position = 0.0104 
    10132 rotated from previous position = 0.0215 degrees 
    10133 atoms outside contour = 3203, contour level = 0.007615 
    10134  
    10135 Position of bcop Q9JIF7 (#5) relative to postprocess.mrc (#1) coordinates: 
    10136 Matrix rotation and translation 
    10137 0.04855166 -0.74197520 0.66866697 284.94626243 
    10138 -0.15889800 0.65519312 0.73856169 314.23609417 
    10139 -0.98610047 -0.14210824 -0.08608766 347.43200387 
    10140 Axis -0.44860881 0.84293018 0.29701658 
    10141 Axis point 361.03389089 0.00000000 -73.60342354 
    10142 Rotation angle (degrees) 101.02115594 
    10143 Shift along axis 240.24274795 
    10144  
    10145 
    10146 > ui mousemode right "translate selected models"
    10147 
    10148 > view matrix models
    10149 > #4,-0.016803,-0.71728,0.69658,281.97,-0.071982,0.69574,0.71468,327.09,-0.99726,-0.038133,-0.063322,352.85
    10150 
    10151 > view matrix models
    10152 > #4,-0.016803,-0.71728,0.69658,282.46,-0.071982,0.69574,0.71468,326.46,-0.99726,-0.038133,-0.063322,350.63
    10153 
    10154 > view matrix models
    10155 > #4,-0.016803,-0.71728,0.69658,281.96,-0.071982,0.69574,0.71468,327.54,-0.99726,-0.038133,-0.063322,352.56
    10156 
    10157 > view matrix models
    10158 > #4,-0.016803,-0.71728,0.69658,281.99,-0.071982,0.69574,0.71468,327.35,-0.99726,-0.038133,-0.063322,352.52
    10159 
    10160 > ui mousemode right "rotate selected models"
    10161 
    10162 > view matrix models
    10163 > #4,0.15215,-0.74422,0.65037,281.51,-0.032738,0.65387,0.75589,327.03,-0.98782,-0.1363,0.075122,351.92
    10164 
    10165 > fitmap #5 inMap #1
    10166 
    10167 Fit molecule bcop Q9JIF7 (#5) to map postprocess.mrc (#1) using 7501 atoms 
    10168 average map value = 0.008653, steps = 64 
    10169 shifted from previous position = 0.0477 
    10170 rotated from previous position = 0.0377 degrees 
    10171 atoms outside contour = 3204, contour level = 0.007615 
    10172  
    10173 Position of bcop Q9JIF7 (#5) relative to postprocess.mrc (#1) coordinates: 
    10174 Matrix rotation and translation 
    10175 0.04852805 -0.74175367 0.66891442 284.99078272 
    10176 -0.15835458 0.65551970 0.73838860 314.23634123 
    10177 -0.98618904 -0.14175822 -0.08564899 347.43060192 
    10178 Axis -0.44830940 0.84303938 0.29715871 
    10179 Axis point 360.98503593 0.00000000 -73.69172233 
    10180 Rotation angle (degrees) 100.99951138 
    10181 Shift along axis 240.39159212 
    10182  
    10183 
    10184 > fitmap #5 inMap #1
    10185 
    10186 Fit molecule bcop Q9JIF7 (#5) to map postprocess.mrc (#1) using 7501 atoms 
    10187 average map value = 0.008654, steps = 48 
    10188 shifted from previous position = 0.0556 
    10189 rotated from previous position = 0.0475 degrees 
    10190 atoms outside contour = 3201, contour level = 0.007615 
    10191  
    10192 Position of bcop Q9JIF7 (#5) relative to postprocess.mrc (#1) coordinates: 
    10193 Matrix rotation and translation 
    10194 0.04863342 -0.74201839 0.66861309 284.93974625 
    10195 -0.15904224 0.65511159 0.73860297 314.22958632 
    10196 -0.98607319 -0.14225851 -0.08615195 347.43227410 
    10197 Axis -0.44870924 0.84289419 0.29696700 
    10198 Axis point 361.06707546 0.00000000 -73.59260335 
    10199 Rotation angle (degrees) 101.02302588 
    10200 Shift along axis 240.18311442 
    10201  
    10202 
    10203 > fitmap #4 inMap #1
    10204 
    10205 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501
    10206 atoms 
    10207 average map value = 0.006862, steps = 88 
    10208 shifted from previous position = 6.32 
    10209 rotated from previous position = 12.5 degrees 
    10210 atoms outside contour = 4265, contour level = 0.007615 
    10211  
    10212 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10213 coordinates: 
    10214 Matrix rotation and translation 
    10215 -0.02375568 -0.71180544 0.70197485 283.50658347 
    10216 0.07563230 0.69888106 0.71122782 323.06929077 
    10217 -0.99685276 0.06998767 0.03723309 346.61881962 
    10218 Axis -0.32398834 0.85833729 0.39785507 
    10219 Axis point 312.57973963 0.00000000 -97.24580641 
    10220 Rotation angle (degrees) 98.26899806 
    10221 Shift along axis 323.35364799 
    10222  
    10223 
    10224 > fitmap #4 inMap #1
    10225 
    10226 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501
    10227 atoms 
    10228 average map value = 0.006862, steps = 44 
    10229 shifted from previous position = 0.00175 
    10230 rotated from previous position = 0.00181 degrees 
    10231 atoms outside contour = 4266, contour level = 0.007615 
    10232  
    10233 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10234 coordinates: 
    10235 Matrix rotation and translation 
    10236 -0.02377180 -0.71182364 0.70195584 283.50748601 
    10237 0.07562490 0.69886199 0.71124735 323.07085740 
    10238 -0.99685293 0.06999297 0.03721839 346.61918331 
    10239 Axis -0.32399671 0.85833092 0.39786199 
    10240 Axis point 312.57975706 0.00000000 -97.24599552 
    10241 Rotation angle (degrees) 98.27044239 
    10242 Shift along axis 323.35280925 
    10243  
    10244 
    10245 > hide #!1 models
    10246 
    10247 > select subtract #4
    10248 
    10249 Nothing selected 
    10250 
    10251 > select add #4
    10252 
    10253 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    10254 
    10255 > view matrix models
    10256 > #4,0.037432,-0.68363,0.72887,282.99,-0.02112,0.72867,0.68453,323.62,-0.99908,-0.041017,0.012837,347.04
    10257 
    10258 > view matrix models
    10259 > #4,-0.013914,-0.70418,0.70988,283.4,-0.03586,0.70985,0.70344,323.63,-0.99926,-0.015669,-0.035129,347.26
    10260 
    10261 > view matrix models
    10262 > #4,-0.010473,-0.70137,0.71272,283.36,0.10431,0.7081,0.69836,322.98,-0.99449,0.08166,0.065747,346.41
    10263 
    10264 > ui mousemode right "translate selected models"
    10265 
    10266 > view matrix models
    10267 > #4,-0.010473,-0.70137,0.71272,286.39,0.10431,0.7081,0.69836,317.88,-0.99449,0.08166,0.065747,343.25
    10268 
    10269 > view matrix models
    10270 > #4,-0.010473,-0.70137,0.71272,285.35,0.10431,0.7081,0.69836,327.55,-0.99449,0.08166,0.065747,343.29
    10271 
    10272 > ui mousemode right "rotate selected models"
    10273 
    10274 > view matrix models
    10275 > #4,0.10478,-0.55074,0.82807,283.76,-0.14287,0.81568,0.56058,329.27,-0.98418,-0.17704,0.0067812,344.22
    10276 
    10277 > fitmap #4 inMap #1
    10278 
    10279 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501
    10280 atoms 
    10281 average map value = 0.006862, steps = 80 
    10282 shifted from previous position = 6.78 
    10283 rotated from previous position = 18.4 degrees 
    10284 atoms outside contour = 4263, contour level = 0.007615 
    10285  
    10286 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10287 coordinates: 
    10288 Matrix rotation and translation 
    10289 -0.02384645 -0.71201247 0.70176177 283.52234822 
    10290 0.07529000 0.69868878 0.71145302 323.10748618 
    10291 -0.99687650 0.06980127 0.03694617 346.63245742 
    10292 Axis -0.32420988 0.85827759 0.39780339 
    10293 Axis point 312.64515312 0.00000000 -97.23309937 
    10294 Rotation angle (degrees) 98.28549839 
    10295 Shift along axis 323.28673342 
    10296  
    10297 
    10298 > fitmap #4 inMap #1
    10299 
    10300 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501
    10301 atoms 
    10302 average map value = 0.006863, steps = 60 
    10303 shifted from previous position = 0.0417 
    10304 rotated from previous position = 0.0158 degrees 
    10305 atoms outside contour = 4262, contour level = 0.007615 
    10306  
    10307 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10308 coordinates: 
    10309 Matrix rotation and translation 
    10310 -0.02361562 -0.71191785 0.70186556 283.49898678 
    10311 0.07534867 0.69879696 0.71134055 323.07473827 
    10312 -0.99687756 0.06968338 0.03713954 346.61902368 
    10313 Axis -0.32419993 0.85829698 0.39776966 
    10314 Axis point 312.65585505 0.00000000 -97.25491070 
    10315 Rotation angle (degrees) 98.27008644 
    10316 Shift along axis 323.25824990 
    10317  
    10318 
    10319 > fitmap #4 inMap #1
    10320 
    10321 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501
    10322 atoms 
    10323 average map value = 0.006862, steps = 44 
    10324 shifted from previous position = 0.0162 
    10325 rotated from previous position = 0.0265 degrees 
    10326 atoms outside contour = 4265, contour level = 0.007615 
    10327  
    10328 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10329 coordinates: 
    10330 Matrix rotation and translation 
    10331 -0.02351289 -0.71164250 0.70214820 283.50337203 
    10332 0.07557556 0.69906733 0.71105077 323.05904795 
    10333 -0.99686282 0.06978411 0.03734569 346.61866410 
    10334 Axis -0.32398886 0.85839585 0.39772827 
    10335 Axis point 312.62223016 0.00000000 -97.24838705 
    10336 Rotation angle (degrees) 98.25331819 
    10337 Shift along axis 323.32065465 
    10338  
    10339 
    10340 > ui mousemode right "rotate selected models"
    10341 
    10342 > select subtract #4
    10343 
    10344 Nothing selected 
    10345 
    10346 > hide #4 models
    10347 
    10348 > hide #5 models
    10349 
    10350 > show #5 models
    10351 
    10352 > show #4 models
    10353 
    10354 > hide #5 models
    10355 
    10356 > ui mousemode right select
    10357 
    10358 Drag select of 5 residues 
    10359 Drag select of 274 residues 
    10360 
    10361 > fitmap sel inMap #1
    10362 
    10363 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 2115
    10364 atoms 
    10365 average map value = 0.008315, steps = 68 
    10366 shifted from previous position = 2.03 
    10367 rotated from previous position = 4.73 degrees 
    10368 atoms outside contour = 923, contour level = 0.007615 
    10369  
    10370 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10371 coordinates: 
    10372 Matrix rotation and translation 
    10373 -0.10579048 -0.70730759 0.69894516 282.96553278 
    10374 0.07896248 0.69469453 0.71495765 324.74299380 
    10375 -0.99124835 0.13082616 -0.01764130 345.12798806 
    10376 Axis -0.29901705 0.86521045 0.40249183 
    10377 Axis point 295.29571959 0.00000000 -81.09648469 
    10378 Rotation angle (degrees) 102.37848859 
    10379 Shift along axis 335.27071250 
    10380  
    10381 
    10382 > fitmap sel inMap #1
    10383 
    10384 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 2115
    10385 atoms 
    10386 average map value = 0.008315, steps = 40 
    10387 shifted from previous position = 0.00564 
    10388 rotated from previous position = 0.0106 degrees 
    10389 atoms outside contour = 921, contour level = 0.007615 
    10390  
    10391 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10392 coordinates: 
    10393 Matrix rotation and translation 
    10394 -0.10571287 -0.70737352 0.69889019 282.97073069 
    10395 0.07909744 0.69461975 0.71501538 324.74730754 
    10396 -0.99124587 0.13086675 -0.01747882 345.12460712 
    10397 Axis -0.29902027 0.86516498 0.40258719 
    10398 Axis point 295.29640717 0.00000000 -81.15126842 
    10399 Rotation angle (degrees) 102.37364024 
    10400 Shift along axis 335.28875858 
    10401  
    10402 
    10403 > fitmap sel inMap #1
    10404 
    10405 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 2115
    10406 atoms 
    10407 average map value = 0.008316, steps = 40 
    10408 shifted from previous position = 0.0453 
    10409 rotated from previous position = 0.0245 degrees 
    10410 atoms outside contour = 923, contour level = 0.007615 
    10411  
    10412 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10413 coordinates: 
    10414 Matrix rotation and translation 
    10415 -0.10592320 -0.70735006 0.69888209 282.93834319 
    10416 0.07872769 0.69466415 0.71501305 324.71829023 
    10417 -0.99125286 0.13075784 -0.01789301 345.13557589 
    10418 Axis -0.29909432 0.86522081 0.40241214 
    10419 Axis point 295.29572978 0.00000000 -81.02182809 
    10420 Rotation angle (degrees) 102.39065520 
    10421 Shift along axis 335.21451712 
    10422  
    10423 
    10424 > fitmap sel inMap #1
    10425 
    10426 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 2115
    10427 atoms 
    10428 average map value = 0.008315, steps = 44 
    10429 shifted from previous position = 0.0476 
    10430 rotated from previous position = 0.0219 degrees 
    10431 atoms outside contour = 920, contour level = 0.007615 
    10432  
    10433 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10434 coordinates: 
    10435 Matrix rotation and translation 
    10436 -0.10568605 -0.70734140 0.69892675 282.97127380 
    10437 0.07902633 0.69466562 0.71497868 324.74852806 
    10438 -0.99125441 0.13079689 -0.01751787 345.12632225 
    10439 Axis -0.29903611 0.86518479 0.40253283 
    10440 Axis point 295.31018308 0.00000000 -81.13842742 
    10441 Rotation angle (degrees) 102.37265369 
    10442 Shift along axis 335.27353174 
    10443  
    10444 
    10445 > show #!1 models
    10446 
    10447 > hide #!1 models
    10448 
    10449 > show #5 models
    10450 
    10451 > hide #5 models
    10452 
    10453 > show #5 models
    10454 
    10455 > select add #4
    10456 
    10457 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    10458 
    10459 > select subtract #4
    10460 
    10461 Nothing selected 
    10462 
    10463 > hide #5 models
    10464 
    10465 Drag select of 507 residues 
    10466 
    10467 > fitmap sel inMap #1
    10468 
    10469 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 4000
    10470 atoms 
    10471 average map value = 0.008277, steps = 72 
    10472 shifted from previous position = 7.64 
    10473 rotated from previous position = 16 degrees 
    10474 atoms outside contour = 1925, contour level = 0.007615 
    10475  
    10476 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10477 coordinates: 
    10478 Matrix rotation and translation 
    10479 0.04641244 -0.73475835 0.67673928 284.67198897 
    10480 -0.15304210 0.66424091 0.73168445 314.76006697 
    10481 -0.98712917 -0.13752886 -0.08161992 347.30373745 
    10482 Axis -0.44228138 0.84662536 0.29599439 
    10483 Axis point 359.30312780 0.00000000 -73.42097611 
    10484 Rotation angle (degrees) 100.68931043 
    10485 Shift along axis 243.37869526 
    10486  
    10487 
    10488 > fitmap sel inMap #1
    10489 
    10490 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 4000
    10491 atoms 
    10492 average map value = 0.008278, steps = 44 
    10493 shifted from previous position = 0.0309 
    10494 rotated from previous position = 0.0374 degrees 
    10495 atoms outside contour = 1923, contour level = 0.007615 
    10496  
    10497 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10498 coordinates: 
    10499 Matrix rotation and translation 
    10500 0.04632868 -0.73495241 0.67653426 284.65184512 
    10501 -0.15360392 0.66396531 0.73181685 314.77209918 
    10502 -0.98704584 -0.13782242 -0.08213094 347.29830464 
    10503 Axis -0.44253516 0.84654949 0.29583203 
    10504 Axis point 359.33832379 0.00000000 -73.32232922 
    10505 Rotation angle (degrees) 100.71468633 
    10506 Shift along axis 243.24367199 
    10507  
    10508 
    10509 > fitmap sel inMap #1
    10510 
    10511 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 4000
    10512 atoms 
    10513 average map value = 0.008278, steps = 44 
    10514 shifted from previous position = 0.011 
    10515 rotated from previous position = 0.0194 degrees 
    10516 atoms outside contour = 1925, contour level = 0.007615 
    10517  
    10518 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10519 coordinates: 
    10520 Matrix rotation and translation 
    10521 0.04646218 -0.73509123 0.67637427 284.66420229 
    10522 -0.15336806 0.66382787 0.73199098 314.77262106 
    10523 -0.98707624 -0.13774410 -0.08189663 347.29963762 
    10524 Axis -0.44257410 0.84646478 0.29601613 
    10525 Axis point 359.36528756 0.00000000 -73.41896329 
    10526 Rotation angle (degrees) 100.70796949 
    10527 Shift along axis 243.26522574 
    10528  
    10529 
    10530 > fitmap sel inMap #1
    10531 
    10532 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 4000
    10533 atoms 
    10534 average map value = 0.008277, steps = 44 
    10535 shifted from previous position = 0.0424 
    10536 rotated from previous position = 0.0391 degrees 
    10537 atoms outside contour = 1921, contour level = 0.007615 
    10538  
    10539 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10540 coordinates: 
    10541 Matrix rotation and translation 
    10542 0.04628338 -0.73469053 0.67682175 284.68851949 
    10543 -0.15313190 0.66432115 0.73159280 314.80954549 
    10544 -0.98712130 -0.13750359 -0.08175753 347.32087173 
    10545 Axis -0.44222981 0.84667848 0.29591949 
    10546 Axis point 359.29889691 0.00000000 -73.38479054 
    10547 Rotation angle (degrees) 100.69474521 
    10548 Shift along axis 243.42373270 
    10549  
    10550 
    10551 > fitmap sel inMap #1
    10552 
    10553 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 4000
    10554 atoms 
    10555 average map value = 0.008277, steps = 44 
    10556 shifted from previous position = 0.0115 
    10557 rotated from previous position = 0.0203 degrees 
    10558 atoms outside contour = 1921, contour level = 0.007615 
    10559  
    10560 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10561 coordinates: 
    10562 Matrix rotation and translation 
    10563 0.04618245 -0.73461065 0.67691533 284.69347280 
    10564 -0.15282529 0.66446533 0.73152598 314.80719942 
    10565 -0.98717355 -0.13723344 -0.08158045 347.32596892 
    10566 Axis -0.44204899 0.84673477 0.29602859 
    10567 Axis point 359.24246153 0.00000000 -73.41107435 
    10568 Rotation angle (degrees) 100.68832229 
    10569 Shift along axis 243.52815631 
    10570  
    10571 
    10572 > select add #4
    10573 
    10574 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    10575 
    10576 > select subtract #4
    10577 
    10578 Nothing selected 
    10579 
    10580 > show #5 models
    10581 
    10582 > hide #5 models
    10583 
    10584 > show #5 models
    10585 
    10586 > hide #5 models
    10587 
    10588 > show #5 models
    10589 
    10590 > hide #5 models
    10591 
    10592 > show #5 models
    10593 
    10594 > hide #4 models
    10595 
    10596 > show #4 models
    10597 
    10598 > hide #4 models
    10599 
    10600 > show #4 models
    10601 
    10602 > hide #4 models
    10603 
    10604 > show #4 models
    10605 
    10606 > hide #4 models
    10607 
    10608 > hide #5 models
    10609 
    10610 > save /fs/gpfs41/lv09/fileset01/pool/pool-
    10611 > briggs/taylor/em_data/20220715_COPI_Golph/alignments/alphafold_copi_colored_RT_2.cxs
    10612 
    10613 ——— End of log from Tue Nov 7 08:56:24 2023 ———
    10614 
    10615 opened ChimeraX session 
    10616 
    10617 > show #13 models
    10618 
    10619 > show #3 models
    10620 
    10621 > select add #3
    10622 
    10623 9810 atoms, 10032 bonds, 1233 residues, 1 model selected 
    10624 
    10625 > show sel atoms
    10626 
    10627 > select subtract #3
    10628 
    10629 Nothing selected 
    10630 
    10631 > hide #13 models
    10632 
    10633 > show #13 models
    10634 
    10635 > show #!1 models
    10636 
    10637 > ui tool show "Side View"
    10638 
    10639 > hide #!1 models
    10640 
    10641 > show #!1 models
    10642 
    10643 > hide #3 models
    10644 
    10645 > show #11 models
    10646 
    10647 > select add #11
    10648 
    10649 1420 atoms, 1441 bonds, 177 residues, 1 model selected 
    10650 
    10651 > select add #13
    10652 
    10653 3787 atoms, 3839 bonds, 475 residues, 2 models selected 
    10654 
    10655 > view
    10656 
    10657 > hide #!1 models
    10658 
    10659 > view orient
    10660 
    10661 > select subtract #11
    10662 
    10663 2367 atoms, 2398 bonds, 298 residues, 1 model selected 
    10664 
    10665 > select subtract #13
    10666 
    10667 Nothing selected 
    10668 
    10669 > show #!1 models
    10670 
    10671 > hide #11 models
    10672 
    10673 > show #10 models
    10674 
    10675 > show #11 models
    10676 
    10677 > show #!2 models
    10678 
    10679 > hide #!2 models
    10680 
    10681 > hide #!1 models
    10682 
    10683 > show #!1 models
    10684 
    10685 > hide #!1 models
    10686 
    10687 > show #!1 models
    10688 
    10689 > show #!2 models
    10690 
    10691 > hide #!2 models
    10692 
    10693 > hide #!1 models
    10694 
    10695 > show #!1 models
    10696 
    10697 > hide #!1 models
    10698 
    10699 > show #!1 models
    10700 
    10701 > hide #11 models
    10702 
    10703 > hide #10 models
    10704 
    10705 > show #14 models
    10706 
    10707 > select add #13
    10708 
    10709 2367 atoms, 2398 bonds, 298 residues, 1 model selected 
    10710 
    10711 > select add #14
    10712 
    10713 9581 atoms, 9771 bonds, 1203 residues, 2 models selected 
    10714 
    10715 > hide #!1 models
    10716 
    10717 > view orient
    10718 
    10719 > select subtract #13
    10720 
    10721 7214 atoms, 7373 bonds, 905 residues, 1 model selected 
    10722 
    10723 > select subtract #14
    10724 
    10725 Nothing selected 
    10726 
    10727 > show #!1 models
    10728 
    10729 > hide #!1 models
    10730 
    10731 > hide #13 models
    10732 
    10733 > show #4 models
    10734 
    10735 > hide #14 models
    10736 
    10737 > select add #4
    10738 
    10739 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    10740 
    10741 > view orient
    10742 
    10743 > show #!1 models
    10744 
    10745 > show #!2 models
    10746 
    10747 > select subtract #4
    10748 
    10749 Nothing selected 
    10750 
    10751 > hide #!1 models
    10752 
    10753 > hide #!2 models
    10754 
    10755 > ui mousemode right select
    10756 
    10757 Drag select of 136 residues 
    10758 
    10759 > select add #4
    10760 
    10761 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    10762 
    10763 > select subtract #4
    10764 
    10765 Nothing selected 
    10766 
    10767 > ui mousemode right select
    10768 
    10769 Drag select of 383 residues 
    10770 
    10771 > select #4/A:608
    10772 
    10773 8 atoms, 7 bonds, 1 residue, 1 model selected 
    10774 Drag select of 383 residues 
    10775 
    10776 > select up
    10777 
    10778 3380 atoms, 3422 bonds, 427 residues, 1 model selected 
    10779 
    10780 > select down
    10781 
    10782 3033 atoms, 383 residues, 1 model selected 
    10783 
    10784 > select up
    10785 
    10786 3380 atoms, 3422 bonds, 427 residues, 1 model selected 
    10787 
    10788 > show #!1 models
    10789 
    10790 > ui mousemode right "rotate selected models"
    10791 
    10792 > view matrix models
    10793 > #4,0.12931,-0.68543,0.71656,283.94,-0.23247,0.68153,0.69388,315.37,-0.96397,-0.2563,-0.071212,347.45
    10794 
    10795 > ui tool show "Fit in Map"
    10796 
    10797 > fitmap #4 inMap #1
    10798 
    10799 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501
    10800 atoms 
    10801 average map value = 0.007082, steps = 84 
    10802 shifted from previous position = 3.21 
    10803 rotated from previous position = 12.7 degrees 
    10804 atoms outside contour = 4196, contour level = 0.007615 
    10805  
    10806 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10807 coordinates: 
    10808 Matrix rotation and translation 
    10809 -0.01686710 -0.71703128 0.69683688 284.06166900 
    10810 -0.07196391 0.69599912 0.71442734 317.58765092 
    10811 -0.99726461 -0.03809679 -0.06333986 348.64581860 
    10812 Axis -0.38340310 0.86312684 0.32865502 
    10813 Axis point 334.98003117 0.00000000 -72.76424387 
    10814 Rotation angle (degrees) 101.07559198 
    10815 Shift along axis 279.79249866 
    10816  
    10817 
    10818 > fitmap sel inMap #1
    10819 
    10820 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 3380
    10821 atoms 
    10822 average map value = 0.008192, steps = 76 
    10823 shifted from previous position = 0.897 
    10824 rotated from previous position = 6.5 degrees 
    10825 atoms outside contour = 1610, contour level = 0.007615 
    10826  
    10827 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10828 coordinates: 
    10829 Matrix rotation and translation 
    10830 0.04832578 -0.75310177 0.65612677 284.99448632 
    10831 -0.14577385 0.64454303 0.75054265 314.37538401 
    10832 -0.98813693 -0.13191669 -0.07863450 347.54799047 
    10833 Axis -0.44967374 0.83786547 0.30947535 
    10834 Axis point 360.57332885 0.00000000 -77.77491042 
    10835 Rotation angle (degrees) 101.12107188 
    10836 Shift along axis 242.80727879 
    10837  
    10838 
    10839 > fitmap sel inMap #1
    10840 
    10841 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 3380
    10842 atoms 
    10843 average map value = 0.008192, steps = 48 
    10844 shifted from previous position = 0.0193 
    10845 rotated from previous position = 0.0344 degrees 
    10846 atoms outside contour = 1611, contour level = 0.007615 
    10847  
    10848 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10849 coordinates: 
    10850 Matrix rotation and translation 
    10851 0.04835907 -0.75283920 0.65642558 285.00381271 
    10852 -0.14534849 0.64489493 0.75032283 314.40058169 
    10853 -0.98819796 -0.13169538 -0.07823752 347.55577869 
    10854 Axis -0.44941378 0.83798324 0.30953408 
    10855 Axis point 360.53354608 0.00000000 -77.83680326 
    10856 Rotation angle (degrees) 101.09823628 
    10857 Shift along axis 242.95813649 
    10858  
    10859 
    10860 > fitmap sel inMap #1
    10861 
    10862 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 3380
    10863 atoms 
    10864 average map value = 0.008192, steps = 44 
    10865 shifted from previous position = 0.0441 
    10866 rotated from previous position = 0.0661 degrees 
    10867 atoms outside contour = 1614, contour level = 0.007615 
    10868  
    10869 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10870 coordinates: 
    10871 Matrix rotation and translation 
    10872 0.04819420 -0.75355540 0.65561542 284.97654024 
    10873 -0.14565957 0.64405910 0.75098014 314.36156413 
    10874 -0.98816021 -0.13168955 -0.07872264 347.53382883 
    10875 Axis -0.44981266 0.83767585 0.30978660 
    10876 Axis point 360.54300294 0.00000000 -77.83205172 
    10877 Rotation angle (degrees) 101.14161651 
    10878 Shift along axis 242.80835826 
    10879  
    10880 
    10881 > view matrix models
    10882 > #4,0.14326,-0.70641,0.69315,284.18,-0.20842,0.66313,0.7189,314.8,-0.96749,-0.24746,-0.052234,347.57
    10883 
    10884 > fitmap sel inMap #1
    10885 
    10886 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 3380
    10887 atoms 
    10888 average map value = 0.008192, steps = 72 
    10889 shifted from previous position = 2.9 
    10890 rotated from previous position = 7.29 degrees 
    10891 atoms outside contour = 1611, contour level = 0.007615 
    10892  
    10893 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10894 coordinates: 
    10895 Matrix rotation and translation 
    10896 0.04831351 -0.75332636 0.65586980 284.96451865 
    10897 -0.14584994 0.64427774 0.75075561 314.38729611 
    10898 -0.98812631 -0.13193021 -0.07874528 347.53736280 
    10899 Axis -0.44980665 0.83776171 0.30956307 
    10900 Axis point 360.57386656 0.00000000 -77.78776602 
    10901 Rotation angle (degrees) 101.13241001 
    10902 Shift along axis 242.78743656 
    10903  
    10904 
    10905 > fitmap sel inMap #1
    10906 
    10907 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 3380
    10908 atoms 
    10909 average map value = 0.008192, steps = 48 
    10910 shifted from previous position = 0.0166 
    10911 rotated from previous position = 0.012 degrees 
    10912 atoms outside contour = 1612, contour level = 0.007615 
    10913  
    10914 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10915 coordinates: 
    10916 Matrix rotation and translation 
    10917 0.04835771 -0.75341224 0.65576789 284.96244308 
    10918 -0.14599671 0.64415306 0.75083406 314.36720535 
    10919 -0.98810247 -0.13204857 -0.07884594 347.53130144 
    10920 Axis -0.44991512 0.83771285 0.30953767 
    10921 Axis point 360.59905243 0.00000000 -77.77460156 
    10922 Rotation angle (degrees) 101.13769886 
    10923 Shift along axis 242.71456482 
    10924  
    10925 
    10926 > fitmap #4 inMap #1
    10927 
    10928 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501
    10929 atoms 
    10930 average map value = 0.007082, steps = 76 
    10931 shifted from previous position = 3.8 
    10932 rotated from previous position = 6.54 degrees 
    10933 atoms outside contour = 4198, contour level = 0.007615 
    10934  
    10935 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10936 coordinates: 
    10937 Matrix rotation and translation 
    10938 -0.01696456 -0.71697328 0.69689419 284.10696210 
    10939 -0.07179855 0.69606869 0.71437619 317.57979658 
    10940 -0.99727487 -0.03791691 -0.06328615 348.65955561 
    10941 Axis -0.38328441 0.86315904 0.32870887 
    10942 Axis point 334.96615091 0.00000000 -72.77270692 
    10943 Rotation angle (degrees) 101.07483838 
    10944 Shift along axis 279.83559197 
    10945  
    10946 
    10947 > fitmap #4 inMap #1
    10948 
    10949 Fit molecule CopB_ Q9JIF7.pdb (#4) to map postprocess.mrc (#1) using 7501
    10950 atoms 
    10951 average map value = 0.007082, steps = 60 
    10952 shifted from previous position = 0.0455 
    10953 rotated from previous position = 0.023 degrees 
    10954 atoms outside contour = 4198, contour level = 0.007615 
    10955  
    10956 Position of CopB_ Q9JIF7.pdb (#4) relative to postprocess.mrc (#1)
    10957 coordinates: 
    10958 Matrix rotation and translation 
    10959 -0.01683813 -0.71721297 0.69665058 284.06623356 
    10960 -0.07197130 0.69581138 0.71460944 317.58211952 
    10961 -0.99726456 -0.03810615 -0.06333491 348.64231772 
    10962 Axis -0.38350654 0.86304514 0.32874887 
    10963 Axis point 334.99916050 0.00000000 -72.80113275 
    10964 Rotation angle (degrees) 101.08008266 
    10965 Shift along axis 279.76221407 
    10966  
    10967 
    10968 > show #!2 models
    10969 
    10970 > select add #4
    10971 
    10972 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    10973 
    10974 > select subtract #4
    10975 
    10976 Nothing selected 
    10977 
    10978 > hide #4 models
    10979 
    10980 > hide #!2 models
    10981 
    10982 > hide #!1 models
    10983 
    10984 > show #!1 models
    10985 
    10986 > view orient
    10987 
    10988 > show #3 models
    10989 
    10990 > show #4 models
    10991 
    10992 > show #6 models
    10993 
    10994 > show #7 models
    10995 
    10996 > show #8 models
    10997 
    10998 > show #!9 models
    10999 
    11000 > show #10 models
    11001 
    11002 > show #11 models
    11003 
    11004 > hide #10 models
    11005 
    11006 > show #13 models
    11007 
    11008 > show #14 models
    11009 
    11010 > save /fs/gpfs41/lv09/fileset01/pool/pool-
    11011 > briggs/taylor/em_data/20220715_COPI_Golph/alignments/alphafold_copi_colored_RT_4.cxs
    11012 
    11013 ——— End of log from Tue Nov 7 12:35:14 2023 ———
    11014 
    11015 opened ChimeraX session 
    11016 
    11017 > show #!2 models
    11018 
    11019 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    11020 > resources/Processing/COPI-Golph_GT/COPI_golph_linkage1_postprocess.mrc"
    11021 
    11022 Opened COPI_golph_linkage1_postprocess.mrc as #15, grid size 128,128,128,
    11023 pixel 3.4, shown at level 0.508, step 1, values float32 
    11024 
    11025 > volume #15 level 0.4248
    11026 
    11027 > select add #15
    11028 
    11029 2 models selected 
    11030 
    11031 > ui mousemode right "translate selected models"
    11032 
    11033 > view matrix models #15,1,0,0,-73.73,0,1,0,34.966,0,0,1,96.96
    11034 
    11035 > hide #!15 models
    11036 
    11037 > show #!15 models
    11038 
    11039 > hide #14 models
    11040 
    11041 > hide #13 models
    11042 
    11043 > hide #11 models
    11044 
    11045 > hide #!9 models
    11046 
    11047 > hide #8 models
    11048 
    11049 > hide #7 models
    11050 
    11051 > hide #6 models
    11052 
    11053 > hide #4 models
    11054 
    11055 > hide #3 models
    11056 
    11057 > hide #!2 models
    11058 
    11059 > hide #!1 models
    11060 
    11061 > show #!2 models
    11062 
    11063 > view matrix models #15,1,0,0,-226.17,0,1,0,89.162,0,0,1,41.878
    11064 
    11065 > view matrix models #15,1,0,0,-58.982,0,1,0,132.68,0,0,1,89.156
    11066 
    11067 > ui mousemode right "rotate selected models"
    11068 
    11069 > view matrix models
    11070 > #15,0.98223,0.0044902,-0.18765,-6.0444,0.0015777,0.99948,0.032175,123.88,0.18769,-0.031899,0.98171,59.539
    11071 
    11072 > view matrix models
    11073 > #15,0.98052,0.015967,-0.19577,-5.9641,-0.016526,0.99986,-0.0012203,136.68,0.19572,0.0044318,0.98065,50.268
    11074 
    11075 > ui mousemode right "translate selected models"
    11076 
    11077 > view matrix models
    11078 > #15,0.98052,0.015967,-0.19577,-6.7123,-0.016526,0.99986,-0.0012203,137.02,0.19572,0.0044318,0.98065,22.376
    11079 
    11080 > volume #15 level 0.3841
    11081 
    11082 > show #!1 models
    11083 
    11084 > hide #!2 models
    11085 
    11086 > hide #!1 models
    11087 
    11088 > show #!1 models
    11089 
    11090 > show #!2 models
    11091 
    11092 > hide #!1 models
    11093 
    11094 > color #15 #b2b2b26f models
    11095 
    11096 > color #15 #b2b2b266 models
    11097 
    11098 > color #15 #b2b2b2a7 models
    11099 
    11100 > view matrix models
    11101 > #15,0.98052,0.015967,-0.19577,8.2659,-0.016526,0.99986,-0.0012203,135.59,0.19572,0.0044318,0.98065,26.362
    11102 
    11103 > view matrix models
    11104 > #15,0.98052,0.015967,-0.19577,36.638,-0.016526,0.99986,-0.0012203,121.02,0.19572,0.0044318,0.98065,17.22
    11105 
    11106 > view matrix models
    11107 > #15,0.98052,0.015967,-0.19577,53.856,-0.016526,0.99986,-0.0012203,135.88,0.19572,0.0044318,0.98065,28.038
    11108 
    11109 > view matrix models
    11110 > #15,0.98052,0.015967,-0.19577,27.557,-0.016526,0.99986,-0.0012203,153.9,0.19572,0.0044318,0.98065,24.813
    11111 
    11112 > show #3 models
    11113 
    11114 > view matrix models
    11115 > #15,0.98052,0.015967,-0.19577,50.336,-0.016526,0.99986,-0.0012203,216.5,0.19572,0.0044318,0.98065,21.949
    11116 
    11117 > view matrix models
    11118 > #15,0.98052,0.015967,-0.19577,58.964,-0.016526,0.99986,-0.0012203,209.14,0.19572,0.0044318,0.98065,23.112
    11119 
    11120 > view matrix models
    11121 > #15,0.98052,0.015967,-0.19577,51.096,-0.016526,0.99986,-0.0012203,214.85,0.19572,0.0044318,0.98065,22.124
    11122 
    11123 > ui mousemode right "rotate selected models"
    11124 
    11125 > view matrix models
    11126 > #15,0.86137,0.40179,-0.31082,24.932,-0.45966,0.87696,-0.14023,375.33,0.21623,0.26366,0.94007,-27.258
    11127 
    11128 > view matrix models
    11129 > #15,0.79215,0.50964,-0.3358,23.588,-0.56964,0.81491,-0.10698,403.94,0.21912,0.27603,0.93584,-29.425
    11130 
    11131 > view matrix models
    11132 > #15,0.77613,0.58521,-0.23484,-15.943,-0.55601,0.8108,0.18292,324.84,0.29745,-0.011395,0.95467,10.116
    11133 
    11134 > view matrix models
    11135 > #15,0.79154,0.55932,-0.2462,-10.745,-0.54262,0.82859,0.13787,330.05,0.28111,0.024466,0.95936,4.7514
    11136 
    11137 > ui mousemode right "translate selected models"
    11138 
    11139 > view matrix models
    11140 > #15,0.79154,0.55932,-0.2462,6.5942,-0.54262,0.82859,0.13787,316.28,0.28111,0.024466,0.95936,5.2536
    11141 
    11142 > ui mousemode right "rotate selected models"
    11143 
    11144 > view matrix models
    11145 > #15,0.84779,0.51493,-0.12689,-27.897,-0.4968,0.85484,0.14978,297.43,0.1856,-0.063942,0.98054,39.557
    11146 
    11147 > view matrix models
    11148 > #15,0.87354,0.48646,0.017035,-65.656,-0.48414,0.86468,0.13391,296.75,0.050414,-0.12523,0.99085,79.624
    11149 
    11150 > ui mousemode right "translate selected models"
    11151 
    11152 > view matrix models
    11153 > #15,0.87354,0.48646,0.017035,-53.181,-0.48414,0.86468,0.13391,267.53,0.050414,-0.12523,0.99085,75.68
    11154 
    11155 > color #15 #b2b2b2cd models
    11156 
    11157 > view matrix models
    11158 > #15,0.87354,0.48646,0.017035,-36.081,-0.48414,0.86468,0.13391,288.3,0.050414,-0.12523,0.99085,77.008
    11159 
    11160 > view matrix models
    11161 > #15,0.87354,0.48646,0.017035,-66.127,-0.48414,0.86468,0.13391,288.73,0.050414,-0.12523,0.99085,78.763
    11162 
    11163 > color #15 #b2b2b2cc models
    11164 
    11165 > view matrix models
    11166 > #15,0.87354,0.48646,0.017035,-83.691,-0.48414,0.86468,0.13391,287.23,0.050414,-0.12523,0.99085,72.864
    11167 
    11168 > ui mousemode right "rotate selected models"
    11169 
    11170 > view matrix models
    11171 > #15,0.81283,0.58249,-0.0015564,-86.063,-0.58225,0.81241,-0.031082,363.79,-0.016841,0.026171,0.99952,52.8
    11172 
    11173 > ui mousemode right "translate selected models"
    11174 
    11175 > view matrix models
    11176 > #15,0.81283,0.58249,-0.0015564,-74.108,-0.58225,0.81241,-0.031082,372.83,-0.016841,0.026171,0.99952,44.774
    11177 
    11178 > view matrix models
    11179 > #15,0.81283,0.58249,-0.0015564,-68.602,-0.58225,0.81241,-0.031082,387.08,-0.016841,0.026171,0.99952,60.564
    11180 
    11181 > ui tool show "Fit in Map"
    11182 
    11183 > fitmap #15 inMap #2
    11184 
    11185 Fit map COPI_golph_linkage1_postprocess.mrc in map emdb 3720 using 80938
    11186 points 
    11187 correlation = 0.3638, correlation about mean = 0.1594, overlap = 958.1 
    11188 steps = 632, shift = 72.3, angle = 35.2 degrees 
    11189  
    11190 Position of COPI_golph_linkage1_postprocess.mrc (#15) relative to emdb 3720
    11191 (#2) coordinates: 
    11192 Matrix rotation and translation 
    11193 0.24079995 -0.95955855 -0.14581762 250.87523828 
    11194 0.83039920 0.28145928 -0.48085116 -67.76251124 
    11195 0.50244656 -0.00529790 0.86459203 -280.59782339 
    11196 Axis 0.24235349 -0.33037117 0.91220594 
    11197 Axis point 245.94884364 110.49212662 0.00000000 
    11198 Rotation angle (degrees) 78.84723205 
    11199 Shift along axis -172.77573255 
    11200  
    11201 
    11202 > select subtract #15
    11203 
    11204 Nothing selected 
    11205 
    11206 > hide #3 models
    11207 
    11208 > hide #!2 models
    11209 
    11210 > show #!1 models
    11211 
    11212 > show #3 models
    11213 
    11214 > show #4 models
    11215 
    11216 > show #6 models
    11217 
    11218 > show #7 models
    11219 
    11220 > show #8 models
    11221 
    11222 > show #!9 models
    11223 
    11224 > show #11 models
    11225 
    11226 > show #13 models
    11227 
    11228 > show #14 models
    11229 
    11230 > hide #!1 models
    11231 
    11232 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and
    11233 > resources/Processing/COPI-Golph_GT/Linkage_1_fitting_Golph_AF_RT.cxs"
    11234 
    11235 > show #!2 models
    11236 
    11237 > hide #!2 models
    11238 
    11239 > hide #3 models
    11240 
    11241 > hide #4 models
    11242 
    11243 > hide #6 models
    11244 
    11245 > hide #7 models
    11246 
    11247 > hide #8 models
    11248 
    11249 > hide #!9 models
    11250 
    11251 > hide #11 models
    11252 
    11253 > hide #13 models
    11254 
    11255 > hide #14 models
    11256 
    11257 > volume #15 level 0.3212
    11258 
    11259 > volume #15 level 0.3724
    11260 
    11261 > rename #3 CopA_F8WHL2
    11262 
    11263 > rename #6 hArf1_P84078
    11264 
    11265 > rename #7 hArf1_P84078
    11266 
    11267 > show #8 models
    11268 
    11269 > rename #8 CopD_Q5XJY5
    11270 
    11271 > show #!9 models
    11272 
    11273 > hide #!9 models
    11274 
    11275 > rename #9 CopG_Q9QZE5
    11276 
    11277 > hide #8 models
    11278 
    11279 > rename #12 hArf1_P84078
    11280 
    11281 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and
    11282 > resources/Processing/COPI-Golph_GT/Linkage_1_fitting_Golph_AF_RT.cxs"
    11283 
    11284 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    11285 > resources/Processing/References/emd_2986_2015_linkage1.map"
    11286 
    11287 Opened emd_2986_2015_linkage1.map as #16, grid size 200,200,200, pixel 2.02,
    11288 shown at level 3.62, step 1, values float32 
    11289 
    11290 > select add #16
    11291 
    11292 2 models selected 
    11293 
    11294 > view orient
    11295 
    11296 > volume #2 level 0.1928
    11297 
    11298 > volume #16 level 2.055
    11299 
    11300 > view matrix models #16,1,0,0,278.66,0,1,0,276.94,0,0,1,316.22
    11301 
    11302 > view matrix models #16,1,0,0,314.02,0,1,0,383.93,0,0,1,284.35
    11303 
    11304 > ui mousemode right "rotate selected models"
    11305 
    11306 > view matrix models
    11307 > #16,0.9211,0.23554,-0.30999,307.52,-0.039987,0.84925,0.52648,394.98,0.38727,-0.47254,0.79166,279.97
    11308 
    11309 > ui mousemode right "translate selected models"
    11310 
    11311 > view matrix models
    11312 > #16,0.9211,0.23554,-0.30999,274.17,-0.039987,0.84925,0.52648,426.96,0.38727,-0.47254,0.79166,310.55
    11313 
    11314 > ui mousemode right "rotate selected models"
    11315 
    11316 > view matrix models
    11317 > #16,0.84705,0.4058,-0.34327,273.57,-0.22779,0.86068,0.45535,424.96,0.48023,-0.30751,0.82147,311.73
    11318 
    11319 > view matrix models
    11320 > #16,0.094305,0.61913,-0.77961,262.59,0.22261,0.75015,0.62267,429.53,0.97034,-0.23227,-0.06708,293.82
    11321 
    11322 > view matrix models
    11323 > #16,0.63479,0.41444,-0.65213,266.35,-0.45893,0.88122,0.1133,417,0.62163,0.22736,0.74959,311.47
    11324 
    11325 > view matrix models
    11326 > #16,0.7821,0.62298,0.014788,281.56,-0.39044,0.47139,0.79079,431.14,0.48568,-0.62425,0.61191,306.63
    11327 
    11328 > view matrix models
    11329 > #16,0.75419,0.57526,-0.31665,274.21,-0.54707,0.81716,0.18155,418.14,0.36319,0.036304,0.93101,314.42
    11330 
    11331 > view matrix models
    11332 > #16,0.40768,0.6183,-0.67194,265.71,-0.51322,0.76379,0.39144,422.69,0.75525,0.18527,0.6287,309.11
    11333 
    11334 > view matrix models
    11335 > #16,0.57225,0.76359,-0.2991,274.47,-0.5793,0.63455,0.51162,424.9,0.58046,-0.1195,0.80547,311.97
    11336 
    11337 > fitmap #16 inMap #15
    11338 
    11339 Fit map emd_2986_2015_linkage1.map in map COPI_golph_linkage1_postprocess.mrc
    11340 using 304384 points 
    11341 correlation = 0.9442, correlation about mean = 0.3153, overlap = 4.02e+05 
    11342 steps = 92, shift = 5.38, angle = 8.38 degrees 
    11343  
    11344 Position of emd_2986_2015_linkage1.map (#16) relative to
    11345 COPI_golph_linkage1_postprocess.mrc (#15) coordinates: 
    11346 Matrix rotation and translation 
    11347 0.99951007 -0.03108553 -0.00364675 217.45099910 
    11348 0.03109278 0.99951461 0.00194671 217.65079361 
    11349 0.00358447 -0.00205915 0.99999145 304.80668615 
    11350 Axis -0.06386343 -0.11528365 0.99127753 
    11351 Axis point -7856.22741698 7659.73186145 0.00000000 
    11352 Rotation angle (degrees) 1.79724595 
    11353 Shift along axis 263.16927579 
    11354  
    11355 
    11356 > hide #!2 models
    11357 
    11358 > hide #!16 models
    11359 
    11360 > show #!16 models
    11361 
    11362 > hide #!16 models
    11363 
    11364 > show #!16 models
    11365 
    11366 > hide #!16 models
    11367 
    11368 > show #!16 models
    11369 
    11370 > hide #!16 models
    11371 
    11372 > show #!16 models
    11373 
    11374 > select subtract #16
    11375 
    11376 Nothing selected 
    11377 
    11378 > hide #!16 models
    11379 
    11380 > show #!16 models
    11381 
    11382 > hide #!16 models
    11383 
    11384 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    11385 > resources/Processing/References/emd_3722_2017_linkage1.map"
    11386 
    11387 Opened emd_3722_2017_linkage1.map as #17, grid size 212,212,212, pixel 1.78,
    11388 shown at level 0.0843, step 1, values float32 
    11389 
    11390 > volume #17 level 0.03583
    11391 
    11392 > select add #17
    11393 
    11394 2 models selected 
    11395 
    11396 > ui mousemode right "translate selected models"
    11397 
    11398 > view matrix models #17,1,0,0,144.81,0,1,0,167.76,0,0,1,191.42
    11399 
    11400 > view matrix models #17,1,0,0,98.86,0,1,0,202.13,0,0,1,156.34
    11401 
    11402 > ui mousemode right "rotate selected models"
    11403 
    11404 > view matrix models
    11405 > #17,-0.41117,0.899,-0.15079,219.81,-0.69907,-0.20482,0.68509,449.79,0.58501,0.3871,0.71268,19.753
    11406 
    11407 > view matrix models
    11408 > #17,-0.768,0.57205,0.28799,277.81,-0.015321,-0.46594,0.88468,338.08,0.64027,0.67502,0.36661,10.921
    11409 
    11410 > view matrix models
    11411 > #17,-0.49445,0.8172,0.29616,178.99,0.30081,-0.15879,0.94037,211.97,0.81549,0.55406,-0.16731,86.496
    11412 
    11413 > view matrix models
    11414 > #17,-0.51648,0.74901,-0.41502,310.27,-0.70967,-0.10318,0.69694,430.79,0.47919,0.65448,0.58483,10.006
    11415 
    11416 > view matrix models
    11417 > #17,-0.41194,0.8427,-0.34665,262.01,-0.81675,-0.1728,0.55051,487.55,0.40401,0.50991,0.75946,23.231
    11418 
    11419 > ui mousemode right "translate selected models"
    11420 
    11421 > view matrix models
    11422 > #17,-0.41194,0.8427,-0.34665,-69.085,-0.81675,-0.1728,0.55051,318.09,0.40401,0.50991,0.75946,-135.89
    11423 
    11424 > view matrix models
    11425 > #17,-0.41194,0.8427,-0.34665,250.19,-0.81675,-0.1728,0.55051,510.18,0.40401,0.50991,0.75946,-8.5576
    11426 
    11427 > ui mousemode right "rotate selected models"
    11428 
    11429 > view matrix models
    11430 > #17,-0.70549,0.67986,-0.20018,312.46,-0.335,-0.070995,0.93954,337.88,0.62455,0.7299,0.27784,-13.944
    11431 
    11432 > view matrix models
    11433 > #17,-0.48961,0.53476,-0.68871,377.62,-0.8124,0.0070959,0.58305,470.35,0.31668,0.84497,0.43097,-2.2417
    11434 
    11435 > view matrix models
    11436 > #17,-0.50936,0.83183,-0.22048,250.28,-0.76322,-0.31832,0.56229,525.55,0.39754,0.45468,0.79701,-3.0074
    11437 
    11438 > view matrix models
    11439 > #17,-0.67427,0.45577,-0.58106,409.9,-0.62558,0.065621,0.7774,392.97,0.39244,0.88768,0.24087,6.0427
    11440 
    11441 > view matrix models
    11442 > #17,-0.72949,0.59011,-0.34584,357.25,-0.68333,-0.60655,0.4064,589.7,0.030051,0.53279,0.84571,43.644
    11443 
    11444 > fitmap #17 inMap #15
    11445 
    11446 Fit map emd_3722_2017_linkage1.map in map COPI_golph_linkage1_postprocess.mrc
    11447 using 723117 points 
    11448 correlation = 0.9448, correlation about mean = 0.4448, overlap = 1.725e+04 
    11449 steps = 80, shift = 5.27, angle = 4.21 degrees 
    11450  
    11451 Position of emd_3722_2017_linkage1.map (#17) relative to
    11452 COPI_golph_linkage1_postprocess.mrc (#15) coordinates: 
    11453 Matrix rotation and translation 
    11454 0.11586229 0.99297385 0.02405942 4.16632834 
    11455 -0.99323203 0.11562620 0.01098721 377.48279546 
    11456 0.00812812 -0.02516959 0.99965015 115.04537270 
    11457 Axis -0.01820035 0.00801938 -0.99980220 
    11458 Axis point 213.55721314 188.00836730 0.00000000 
    11459 Rotation angle (degrees) 83.36353620 
    11460 Shift along axis -112.07126543 
    11461  
    11462 
    11463 > view matrix models
    11464 > #17,-0.66805,0.66076,-0.3422,336.84,-0.74292,-0.56619,0.35708,600.16,0.042194,0.49277,0.86914,46.321
    11465 
    11466 > fitmap #17 inMap #15
    11467 
    11468 Fit map emd_3722_2017_linkage1.map in map COPI_golph_linkage1_postprocess.mrc
    11469 using 723117 points 
    11470 correlation = 0.9449, correlation about mean = 0.4447, overlap = 1.725e+04 
    11471 steps = 64, shift = 0.139, angle = 1.54 degrees 
    11472  
    11473 Position of emd_3722_2017_linkage1.map (#17) relative to
    11474 COPI_golph_linkage1_postprocess.mrc (#15) coordinates: 
    11475 Matrix rotation and translation 
    11476 0.11577968 0.99298493 0.02400000 4.18525548 
    11477 -0.99324192 0.11554509 0.01094590 377.50750041 
    11478 0.00809604 -0.02510512 0.99965203 114.97681952 
    11479 Axis -0.01814693 0.00800555 -0.99980328 
    11480 Axis point 213.56543340 188.00511122 0.00000000 
    11481 Rotation angle (degrees) 83.36820385 
    11482 Shift along axis -112.00799683 
    11483  
    11484 
    11485 > fitmap #17 inMap #15
    11486 
    11487 Fit map emd_3722_2017_linkage1.map in map COPI_golph_linkage1_postprocess.mrc
    11488 using 723117 points 
    11489 correlation = 0.9449, correlation about mean = 0.4447, overlap = 1.725e+04 
    11490 steps = 24, shift = 0.0151, angle = 0.00227 degrees 
    11491  
    11492 Position of emd_3722_2017_linkage1.map (#17) relative to
    11493 COPI_golph_linkage1_postprocess.mrc (#15) coordinates: 
    11494 Matrix rotation and translation 
    11495 0.11574972 0.99298833 0.02400375 4.18939547 
    11496 -0.99324562 0.11551574 0.01091971 377.51882888 
    11497 0.00807034 -0.02510557 0.99965223 114.96666815 
    11498 Axis -0.01813392 0.00802034 -0.99980340 
    11499 Axis point 213.56917414 188.00831708 0.00000000 
    11500 Rotation angle (degrees) 83.36990886 
    11501 Shift along axis -111.99220521 
    11502  
    11503 
    11504 > fitmap #17 inMap #15
    11505 
    11506 Fit map emd_3722_2017_linkage1.map in map COPI_golph_linkage1_postprocess.mrc
    11507 using 723117 points 
    11508 correlation = 0.9448, correlation about mean = 0.4448, overlap = 1.725e+04 
    11509 steps = 28, shift = 0.0944, angle = 0.0261 degrees 
    11510  
    11511 Position of emd_3722_2017_linkage1.map (#17) relative to
    11512 COPI_golph_linkage1_postprocess.mrc (#15) coordinates: 
    11513 Matrix rotation and translation 
    11514 0.11612366 0.99294047 0.02417693 4.10484990 
    11515 -0.99320060 0.11588337 0.01111788 377.40674556 
    11516 0.00823769 -0.02530359 0.99964587 115.06782484 
    11517 Axis -0.01833413 0.00802362 -0.99979972 
    11518 Axis point 213.53212323 188.01353754 0.00000000 
    11519 Rotation angle (degrees) 83.34870436 
    11520 Shift along axis -112.09186818 
    11521  
    11522 
    11523 > fitmap #17 inMap #15
    11524 
    11525 Fit map emd_3722_2017_linkage1.map in map COPI_golph_linkage1_postprocess.mrc
    11526 using 723117 points 
    11527 correlation = 0.9448, correlation about mean = 0.4448, overlap = 1.725e+04 
    11528 steps = 40, shift = 0.0169, angle = 0.0175 degrees 
    11529  
    11530 Position of emd_3722_2017_linkage1.map (#17) relative to
    11531 COPI_golph_linkage1_postprocess.mrc (#15) coordinates: 
    11532 Matrix rotation and translation 
    11533 0.11589589 0.99297080 0.02402345 4.16654300 
    11534 -0.99322813 0.11566026 0.01098070 377.47647231 
    11535 0.00812495 -0.02513339 0.99965109 115.03925499 
    11536 Axis -0.01817892 0.00800291 -0.99980272 
    11537 Axis point 213.56129838 188.00272386 0.00000000 
    11538 Rotation angle (degrees) 83.36155775 
    11539 Shift along axis -112.07139468 
    11540  
    11541 
    11542 > fitmap #17 inMap #15
    11543 
    11544 Fit map emd_3722_2017_linkage1.map in map COPI_golph_linkage1_postprocess.mrc
    11545 using 723117 points 
    11546 correlation = 0.9448, correlation about mean = 0.4448, overlap = 1.725e+04 
    11547 steps = 44, shift = 0.0017, angle = 0.0108 degrees 
    11548  
    11549 Position of emd_3722_2017_linkage1.map (#17) relative to
    11550 COPI_golph_linkage1_postprocess.mrc (#15) coordinates: 
    11551 Matrix rotation and translation 
    11552 0.11604249 0.99295154 0.02411174 4.12742813 
    11553 -0.99321047 0.11580416 0.01106106 377.43274324 
    11554 0.00819086 -0.02523158 0.99964808 115.04508414 
    11555 Axis -0.01826912 0.00801430 -0.99980099 
    11556 Axis point 213.54398929 188.00902801 0.00000000 
    11557 Rotation angle (degrees) 83.35326632 
    11558 Shift along axis -112.07273251 
    11559  
    11560 
    11561 > fitmap #17 inMap #15
    11562 
    11563 Fit map emd_3722_2017_linkage1.map in map COPI_golph_linkage1_postprocess.mrc
    11564 using 723117 points 
    11565 correlation = 0.9449, correlation about mean = 0.4447, overlap = 1.725e+04 
    11566 steps = 28, shift = 0.0715, angle = 0.0128 degrees 
    11567  
    11568 Position of emd_3722_2017_linkage1.map (#17) relative to
    11569 COPI_golph_linkage1_postprocess.mrc (#15) coordinates: 
    11570 Matrix rotation and translation 
    11571 0.11613389 0.99294550 0.02391956 4.13714493 
    11572 -0.99320018 0.11589886 0.01099299 377.42409910 
    11573 0.00814319 -0.02503357 0.99965344 114.94432756 
    11574 Axis -0.01813537 0.00794165 -0.99980400 
    11575 Axis point 213.56768474 187.98538808 0.00000000 
    11576 Rotation angle (degrees) 83.34774404 
    11577 Shift along axis -111.99945594 
    11578  
    11579 
    11580 > select subtract #17
    11581 
    11582 Nothing selected 
    11583 
    11584 > ui mousemode right zoom
    11585 
    11586 > hide #!15 models
    11587 
    11588 > show #!2 models
    11589 
    11590 > hide #!2 models
    11591 
    11592 > show #!2 models
    11593 
    11594 > hide #!2 models
    11595 
    11596 > show #3 models
    11597 
    11598 > show #4 models
    11599 
    11600 > show #6 models
    11601 
    11602 > hide #3 models
    11603 
    11604 > hide #4 models
    11605 
    11606 > hide #6 models
    11607 
    11608 > show #13 models
    11609 
    11610 > hide #13 models
    11611 
    11612 > show #!15 models
    11613 
    11614 > show #13 models
    11615 
    11616 > hide #13 models
    11617 
    11618 > hide #!15 models
    11619 
    11620 > hide #!17 models
    11621 
    11622 > show #!15 models
    11623 
    11624 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and
    11625 > resources/Processing/COPI-Golph_GT/Linkage_1_fitting_Golph_AF_RT.cxs"
    11626 
    11627 [Repeated 1 time(s)]
    11628 
    11629 ——— End of log from Tue Dec 5 14:45:54 2023 ———
    11630 
    11631 opened ChimeraX session 
    11632 
    11633 > hide #!15 target m
    11634 
    11635 > show #!2 models
    11636 
    11637 > volume #2 level 0.1535
    11638 
    11639 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    11640 > resources/Processing/COPI-Golph_GT/COPI_golph_linkage2_postprocess.mrc"
    11641 
    11642 Opened COPI_golph_linkage2_postprocess.mrc as #18, grid size 150,150,150,
    11643 pixel 3.4, shown at level 0.579, step 1, values float32 
    11644 
    11645 > color #18 #b2b2b2b5 models
    11646 
    11647 > volume #18 level 0.4748
    11648 
    11649 > select add #18
    11650 
    11651 2 models selected 
    11652 
    11653 > show #8 models
    11654 
    11655 > ui mousemode right "translate selected models"
    11656 
    11657 > view matrix models #18,1,0,0,37.911,0,1,0,323.13,0,0,1,-76.889
    11658 
    11659 > view matrix models #18,1,0,0,78.69,0,1,0,212.38,0,0,1,15.274
    11660 
    11661 > view matrix models #18,1,0,0,41.63,0,1,0,189.41,0,0,1,-19.748
    11662 
    11663 > view matrix models #18,1,0,0,166.87,0,1,0,48.28,0,0,1,-38.706
    11664 
    11665 > view matrix models #18,1,0,0,212.77,0,1,0,89.771,0,0,1,-19.788
    11666 
    11667 > view matrix models #18,1,0,0,370.65,0,1,0,-18.809,0,0,1,48.477
    11668 
    11669 > view matrix models #18,1,0,0,-123.38,0,1,0,161.02,0,0,1,-93.371
    11670 
    11671 > view matrix models #18,1,0,0,8.8176,0,1,0,138.79,0,0,1,-50.705
    11672 
    11673 > view matrix models #18,1,0,0,-48.069,0,1,0,187.67,0,0,1,3.1902
    11674 
    11675 > ui mousemode right "rotate selected models"
    11676 
    11677 > view matrix models
    11678 > #18,0.92266,-0.045215,-0.38295,92.378,0.12648,0.97365,0.18977,105.95,0.36427,-0.22353,0.90407,-14.377
    11679 
    11680 > ui mousemode right "translate selected models"
    11681 
    11682 > view matrix models
    11683 > #18,0.92266,-0.045215,-0.38295,114.12,0.12648,0.97365,0.18977,62.084,0.36427,-0.22353,0.90407,-3.5048
    11684 
    11685 > show #3 models
    11686 
    11687 > view matrix models
    11688 > #18,0.92266,-0.045215,-0.38295,157.67,0.12648,0.97365,0.18977,73.286,0.36427,-0.22353,0.90407,18.682
    11689 
    11690 > view matrix models
    11691 > #18,0.92266,-0.045215,-0.38295,163.14,0.12648,0.97365,0.18977,98.07,0.36427,-0.22353,0.90407,26.33
    11692 
    11693 > view matrix models
    11694 > #18,0.92266,-0.045215,-0.38295,170.88,0.12648,0.97365,0.18977,97.935,0.36427,-0.22353,0.90407,41.323
    11695 
    11696 > view matrix models
    11697 > #18,0.92266,-0.045215,-0.38295,166.77,0.12648,0.97365,0.18977,87.449,0.36427,-0.22353,0.90407,32.195
    11698 
    11699 > ui mousemode right "rotate selected models"
    11700 
    11701 > view matrix models
    11702 > #18,0.91983,-0.20028,-0.33736,192.99,0.17356,0.97889,-0.10792,157.26,0.35185,0.040715,0.93517,-38.458
    11703 
    11704 > view matrix models
    11705 > #18,0.97834,-0.12989,-0.16116,109.83,0.11624,0.989,-0.091499,165.84,0.17128,0.070784,0.98268,-9.7907
    11706 
    11707 > view matrix models
    11708 > #18,0.91272,-0.39632,-0.099394,176.21,0.38748,0.91674,-0.097195,110.94,0.12964,0.050198,0.99029,4.5614
    11709 
    11710 > view matrix models
    11711 > #18,0.96031,-0.12322,-0.25025,138.27,0.078274,0.98014,-0.18223,204.05,0.26774,0.15541,0.95088,-48.166
    11712 
    11713 > hide #3 models
    11714 
    11715 > hide #!2 models
    11716 
    11717 > show #!2 models
    11718 
    11719 > hide #8 models
    11720 
    11721 > show #8 models
    11722 
    11723 > hide #8 models
    11724 
    11725 > show #8 models
    11726 
    11727 > view matrix models
    11728 > #18,-0.26333,-0.74291,-0.61542,729.88,0.77204,-0.5448,0.32732,246.78,-0.57845,-0.38894,0.71702,384.29
    11729 
    11730 > ui mousemode right "translate selected models"
    11731 
    11732 > view matrix models
    11733 > #18,-0.26333,-0.74291,-0.61542,640.99,0.77204,-0.5448,0.32732,186.86,-0.57845,-0.38894,0.71702,316.02
    11734 
    11735 > view matrix models
    11736 > #18,-0.26333,-0.74291,-0.61542,639.87,0.77204,-0.5448,0.32732,168.07,-0.57845,-0.38894,0.71702,316.46
    11737 
    11738 > view matrix models
    11739 > #18,-0.26333,-0.74291,-0.61542,670.85,0.77204,-0.5448,0.32732,116.2,-0.57845,-0.38894,0.71702,308.88
    11740 
    11741 > view matrix models
    11742 > #18,-0.26333,-0.74291,-0.61542,668.36,0.77204,-0.5448,0.32732,123.07,-0.57845,-0.38894,0.71702,309.05
    11743 
    11744 > view matrix models
    11745 > #18,-0.26333,-0.74291,-0.61542,694.65,0.77204,-0.5448,0.32732,98.173,-0.57845,-0.38894,0.71702,322.41
    11746 
    11747 > view matrix models
    11748 > #18,-0.26333,-0.74291,-0.61542,696.9,0.77204,-0.5448,0.32732,106.33,-0.57845,-0.38894,0.71702,322.54
    11749 
    11750 > view matrix models
    11751 > #18,-0.26333,-0.74291,-0.61542,689.63,0.77204,-0.5448,0.32732,111.08,-0.57845,-0.38894,0.71702,323.37
    11752 
    11753 > select subtract #18
    11754 
    11755 Nothing selected 
    11756 
    11757 > ui tool show "Fit in Map"
    11758 
    11759 > fitmap #18 inMap #2
    11760 
    11761 Fit map COPI_golph_linkage2_postprocess.mrc in map emdb 3720 using 76728
    11762 points 
    11763 correlation = 0.393, correlation about mean = 0.1787, overlap = 1304 
    11764 steps = 416, shift = 13.5, angle = 30.6 degrees 
    11765  
    11766 Position of COPI_golph_linkage2_postprocess.mrc (#18) relative to emdb 3720
    11767 (#2) coordinates: 
    11768 Matrix rotation and translation 
    11769 -0.29086353 0.88764467 0.35705090 -72.93361915 
    11770 -0.93714915 -0.18913877 -0.29322005 460.35677211 
    11771 -0.19274305 -0.41989697 0.88686901 -44.24127869 
    11772 Axis -0.06632215 0.28784657 -0.95537727 
    11773 Axis point 122.59971391 247.03643730 0.00000000 
    11774 Rotation angle (degrees) 107.25150392 
    11775 Shift along axis 179.61634476 
    11776  
    11777 
    11778 > show #!15 models
    11779 
    11780 > hide #!15 models
    11781 
    11782 > show #!15 models
    11783 
    11784 > hide #!18 models
    11785 
    11786 > hide #!15 models
    11787 
    11788 > show #!18 models
    11789 
    11790 > show #!1 models
    11791 
    11792 > hide #!1 models
    11793 
    11794 > show #3 models
    11795 
    11796 > show #4 models
    11797 
    11798 > show #6 models
    11799 
    11800 > show #7 models
    11801 
    11802 > show #!9 models
    11803 
    11804 > show #10 models
    11805 
    11806 > hide #10 models
    11807 
    11808 > show #11 models
    11809 
    11810 > show #13 models
    11811 
    11812 > show #14 models
    11813 
    11814 > hide #!2 models
    11815 
    11816 > show #!2 models
    11817 
    11818 > hide #!2 models
    11819 
    11820 > show #!2 models
    11821 
    11822 > hide #!2 models
    11823 
    11824 > show #!2 models
    11825 
    11826 > hide #!2 models
    11827 
    11828 > show #!2 models
    11829 
    11830 > hide #!2 models
    11831 
    11832 > show #!2 models
    11833 
    11834 > hide #!2 models
    11835 
    11836 > show #!2 models
    11837 
    11838 > hide #!2 models
    11839 
    11840 > show #!2 models
    11841 
    11842 > hide #!2 models
    11843 
    11844 > show #!2 models
    11845 
    11846 > hide #!2 models
    11847 
    11848 > show #!2 models
    11849 
    11850 > hide #!2 models
    11851 
    11852 > show #!1 models
    11853 
    11854 > hide #!1 models
    11855 
    11856 > show #!2 models
    11857 
    11858 > show #!1 models
    11859 
    11860 > hide #!1 models
    11861 
    11862 > show #!1 models
    11863 
    11864 > hide #4 models
    11865 
    11866 > show #5 models
    11867 
    11868 > hide #!1 models
    11869 
    11870 > show #!1 models
    11871 
    11872 > hide #!1 models
    11873 
    11874 > show #!1 models
    11875 
    11876 > hide #!18 models
    11877 
    11878 > show #!18 models
    11879 
    11880 > hide #!18 models
    11881 
    11882 > show #!18 models
    11883 
    11884 > hide #!18 models
    11885 
    11886 > show #!18 models
    11887 
    11888 > hide #!18 models
    11889 
    11890 > show #!18 models
    11891 
    11892 > hide #14 models
    11893 
    11894 > hide #13 models
    11895 
    11896 > hide #11 models
    11897 
    11898 > hide #!9 models
    11899 
    11900 > hide #8 models
    11901 
    11902 > hide #7 models
    11903 
    11904 > hide #6 models
    11905 
    11906 > hide #5 models
    11907 
    11908 > hide #3 models
    11909 
    11910 > hide #!2 models
    11911 
    11912 > hide #!1 models
    11913 
    11914 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    11915 > resources/Processing/References/emd_2987_2015_linkage2.map"
    11916 
    11917 Opened emd_2987_2015_linkage2.map as #19, grid size 200,200,200, pixel 2.02,
    11918 shown at level 3.35, step 1, values float32 
    11919 
    11920 > volume #19 level 1.908
    11921 
    11922 > select add #19
    11923 
    11924 2 models selected 
    11925 
    11926 > view matrix models #19,1,0,0,281.34,0,1,0,349.41,0,0,1,125.42
    11927 
    11928 > view matrix models #19,1,0,0,221.57,0,1,0,296.89,0,0,1,303
    11929 
    11930 > ui mousemode right "rotate selected models"
    11931 
    11932 > view matrix models
    11933 > #19,0.89469,0.0047926,-0.44667,207.18,0.15862,0.93137,0.32771,307.33,0.41758,-0.36405,0.83252,296.99
    11934 
    11935 > view matrix models
    11936 > #19,0.96644,-0.22088,-0.13116,216.95,0.22139,0.97513,-0.010844,296.51,0.1303,-0.018558,0.9913,302.7
    11937 
    11938 > view matrix models
    11939 > #19,0.60959,-0.39067,-0.68977,198.63,0.71217,0.65206,0.26007,304.7,0.34817,-0.64976,0.67571,291.43
    11940 
    11941 > view matrix models
    11942 > #19,-0.58102,-0.73076,-0.35834,208.62,0.81146,-0.48613,-0.32437,283.86,0.062839,-0.47924,0.87543,298.14
    11943 
    11944 > ui mousemode right "translate selected models"
    11945 
    11946 > view matrix models
    11947 > #19,-0.58102,-0.73076,-0.35834,209.59,0.81146,-0.48613,-0.32437,286.9,0.062839,-0.47924,0.87543,328.25
    11948 
    11949 > view matrix models
    11950 > #19,-0.58102,-0.73076,-0.35834,225.92,0.81146,-0.48613,-0.32437,276.76,0.062839,-0.47924,0.87543,330.19
    11951 
    11952 > ui mousemode right "rotate selected models"
    11953 
    11954 > view matrix models
    11955 > #19,-0.51565,-0.72069,-0.46336,222.56,0.85324,-0.48117,-0.20114,280.74,-0.077999,-0.49907,0.86304,329.75
    11956 
    11957 > view matrix models
    11958 > #19,-0.55739,-0.73804,-0.38027,225.2,0.83025,-0.49523,-0.25581,278.96,0.0004801,-0.45831,0.88879,330.65
    11959 
    11960 > view matrix models
    11961 > #19,-0.65627,-0.64485,-0.39176,224.99,0.75157,-0.60456,-0.26389,278.49,-0.066669,-0.46762,0.88141,330.4
    11962 
    11963 > fitmap #19 inMap #18
    11964 
    11965 Fit map emd_2987_2015_linkage2.map in map COPI_golph_linkage2_postprocess.mrc
    11966 using 245288 points 
    11967 correlation = 0.9621, correlation about mean = 0.4468, overlap = 4.315e+05 
    11968 steps = 64, shift = 13.6, angle = 9.64 degrees 
    11969  
    11970 Position of emd_2987_2015_linkage2.map (#19) relative to
    11971 COPI_golph_linkage2_postprocess.mrc (#18) coordinates: 
    11972 Matrix rotation and translation 
    11973 0.99943198 -0.03369827 0.00038712 255.16295945 
    11974 0.03369824 0.99943205 0.00008535 255.14695389 
    11975 -0.00038977 -0.00007225 0.99999992 337.62488892 
    11976 Axis -0.00233824 0.01152634 0.99993084 
    11977 Axis point -7325.14771320 7719.05156474 0.00000000 
    11978 Rotation angle (degrees) 1.93126701 
    11979 Shift along axis 339.94581739 
    11980  
    11981 
    11982 > select subtract #19
    11983 
    11984 Nothing selected 
    11985 
    11986 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    11987 > resources/Processing/References/emd_3723_2017_linkage2.map"
    11988 
    11989 Opened emd_3723_2017_linkage2.map as #20, grid size 212,212,212, pixel 1.78,
    11990 shown at level 0.1, step 1, values float32 
    11991 
    11992 > select add #20
    11993 
    11994 2 models selected 
    11995 
    11996 > volume #20 level 0.0556
    11997 
    11998 > hide #!19 models
    11999 
    12000 > view matrix models
    12001 > #20,0.97164,-0.02719,-0.2349,49.932,-0.049625,0.9478,-0.31498,72.049,0.23121,0.3177,0.91957,-88.787
    12002 
    12003 > ui mousemode right "translate selected models"
    12004 
    12005 > view matrix models
    12006 > #20,0.97164,-0.02719,-0.2349,112.83,-0.049625,0.9478,-0.31498,201.68,0.23121,0.3177,0.91957,-14.58
    12007 
    12008 > view matrix models
    12009 > #20,0.97164,-0.02719,-0.2349,66.5,-0.049625,0.9478,-0.31498,186.06,0.23121,0.3177,0.91957,18.141
    12010 
    12011 > ui mousemode right "rotate selected models"
    12012 
    12013 > view matrix models
    12014 > #20,0.8629,0.037701,-0.50397,119.87,-0.11576,0.98545,-0.12448,159.18,0.49195,0.16575,0.8547,9.1445
    12015 
    12016 > ui mousemode right "translate selected models"
    12017 
    12018 > view matrix models
    12019 > #20,0.8629,0.037701,-0.50397,167.83,-0.11576,0.98545,-0.12448,147.77,0.49195,0.16575,0.8547,10.969
    12020 
    12021 > fitmap #20 inMap #18
    12022 
    12023 Fit map emd_3723_2017_linkage2.map in map COPI_golph_linkage2_postprocess.mrc
    12024 using 430908 points 
    12025 correlation = 0.9553, correlation about mean = 0.437, overlap = 1.937e+04 
    12026 steps = 128, shift = 13.7, angle = 16 degrees 
    12027  
    12028 Position of emd_3723_2017_linkage2.map (#20) relative to
    12029 COPI_golph_linkage2_postprocess.mrc (#18) coordinates: 
    12030 Matrix rotation and translation 
    12031 -0.52283140 0.85243566 0.00087740 192.72826004 
    12032 -0.85243398 -0.52283212 0.00169730 514.37823243 
    12033 0.00190557 0.00013948 0.99999818 127.27802922 
    12034 Axis -0.00091375 -0.00060308 -0.99999940 
    12035 Axis point 240.25113231 203.24167526 0.00000000 
    12036 Rotation angle (degrees) 121.52245397 
    12037 Shift along axis -127.76426867 
    12038  
    12039 
    12040 > select subtract #20
    12041 
    12042 Nothing selected 
    12043 
    12044 > show #13 models
    12045 
    12046 > hide #13 models
    12047 
    12048 > hide #!20 models
    12049 
    12050 > show #!1 models
    12051 
    12052 > volume #1 level 0.01004
    12053 
    12054 > hide #!18 models
    12055 
    12056 > show #!18 models
    12057 
    12058 > show #13 models
    12059 
    12060 > hide #13 models
    12061 
    12062 > hide #!1 models
    12063 
    12064 > show #!1 models
    12065 
    12066 > hide #!1 models
    12067 
    12068 > hide #!18 models
    12069 
    12070 > show #!18 models
    12071 
    12072 > show #!2 models
    12073 
    12074 > show #13 models
    12075 
    12076 > show #8 models
    12077 
    12078 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and
    12079 > resources/Processing/COPI-Golph_GT/Linkage_2_fitting_Golph_AF_RT.cxs"
    12080 
    12081 > hide #!18 models
    12082 
    12083 > hide #13 models
    12084 
    12085 > hide #8 models
    12086 
    12087 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    12088 > resources/Processing/COPI-Golph_GT/COPI_golph_linkage3_postprocess.mrc"
    12089 
    12090 Opened COPI_golph_linkage3_postprocess.mrc as #21, grid size 160,160,160,
    12091 pixel 3.4, shown at level 0.731, step 1, values float32 
    12092 
    12093 > select add #21
    12094 
    12095 2 models selected 
    12096 
    12097 > volume #21 level 0.6806
    12098 
    12099 > color #21 #898bb8ff models
    12100 
    12101 > color #21 #adb1b8ff models
    12102 
    12103 > color #21 #adb1b8b6 models
    12104 
    12105 > color #21 #adb1b8b8 models
    12106 
    12107 > view matrix models #21,1,0,0,-69.887,0,1,0,-146.97,0,0,1,106.13
    12108 
    12109 > view matrix models #21,1,0,0,69.289,0,1,0,-255.81,0,0,1,-21.636
    12110 
    12111 > show #3 models
    12112 
    12113 > view matrix models #21,1,0,0,-8.9068,0,1,0,-218.78,0,0,1,51.499
    12114 
    12115 > view matrix models #21,1,0,0,-249.44,0,1,0,116.86,0,0,1,196.35
    12116 
    12117 > view matrix models #21,1,0,0,-118.83,0,1,0,15.086,0,0,1,161.26
    12118 
    12119 > view matrix models #21,1,0,0,-100.59,0,1,0,1.8365,0,0,1,14.26
    12120 
    12121 > show #8 models
    12122 
    12123 > view matrix models #21,1,0,0,-325.05,0,1,0,-185.92,0,0,1,143.76
    12124 
    12125 > view matrix models #21,1,0,0,-157.21,0,1,0,-165.58,0,0,1,121.51
    12126 
    12127 > view matrix models #21,1,0,0,306.48,0,1,0,-96.47,0,0,1,55.209
    12128 
    12129 > show #6 models
    12130 
    12131 > view matrix models #21,1,0,0,-106.18,0,1,0,-309.4,0,0,1,38.441
    12132 
    12133 > view matrix models #21,1,0,0,62.295,0,1,0,-258.65,0,0,1,47.459
    12134 
    12135 > ui mousemode right "rotate selected models"
    12136 
    12137 > view matrix models
    12138 > #21,0.89043,-0.015893,-0.45484,225.84,0.21015,0.90083,0.37992,-396.93,0.4037,-0.43388,0.80547,111.02
    12139 
    12140 > view matrix models
    12141 > #21,0.95587,-0.0064312,-0.29372,159.62,0.13825,0.892,0.43038,-389.32,0.25923,-0.45199,0.85352,141.6
    12142 
    12143 > view matrix models
    12144 > #21,0.95548,-0.032907,-0.29323,166.79,0.12768,0.94202,0.31033,-365.9,0.26601,-0.33395,0.90428,93.187
    12145 
    12146 > ui mousemode right "translate selected models"
    12147 
    12148 > view matrix models
    12149 > #21,0.95548,-0.032907,-0.29323,119.6,0.12768,0.94202,0.31033,-206.92,0.26601,-0.33395,0.90428,40.217
    12150 
    12151 > view matrix models
    12152 > #21,0.95548,-0.032907,-0.29323,149.13,0.12768,0.94202,0.31033,-368.55,0.26601,-0.33395,0.90428,80.718
    12153 
    12154 > ui mousemode right "rotate selected models"
    12155 
    12156 > view matrix models
    12157 > #21,0.9092,0.00026127,-0.41635,187.73,0.1849,0.89572,0.40434,-398.27,0.37304,-0.44462,0.81434,107.29
    12158 
    12159 > view matrix models
    12160 > #21,0.83643,0.54213,0.080568,-81.317,-0.51647,0.73041,0.44695,-174.53,0.18346,-0.41545,0.89092,129.17
    12161 
    12162 > view matrix models
    12163 > #21,0.66015,0.7445,0.099557,-93.827,-0.71972,0.58903,0.3675,-58.129,0.21496,-0.31426,0.92468,83.446
    12164 
    12165 > view matrix models
    12166 > #21,0.65675,0.64082,-0.39753,76.738,-0.65717,0.7449,0.11509,-45.764,0.36987,0.18566,0.91034,-90.693
    12167 
    12168 > view matrix models
    12169 > #21,0.55552,0.79996,0.22686,-116.66,-0.65365,0.58877,-0.4755,163.79,-0.51395,0.11586,0.84996,186.01
    12170 
    12171 > view matrix models
    12172 > #21,0.42233,0.88824,-0.18073,11.515,-0.77453,0.4572,0.43711,-27.136,0.47088,-0.044626,0.88107,-47.178
    12173 
    12174 > ui mousemode right "translate selected models"
    12175 
    12176 > view matrix models
    12177 > #21,0.42233,0.88824,-0.18073,15.921,-0.77453,0.4572,0.43711,107.61,0.47088,-0.044626,0.88107,-95.497
    12178 
    12179 > ui mousemode right "rotate selected models"
    12180 
    12181 > view matrix models
    12182 > #21,-0.051729,0.72322,-0.68868,334.36,-0.99462,0.0247,0.10065,380.94,0.0898,0.69018,0.71804,-145.39
    12183 
    12184 > view matrix models
    12185 > #21,0.71972,0.6719,0.17481,-107.28,-0.64086,0.73979,-0.20497,176.99,-0.26704,0.03549,0.96303,60.203
    12186 
    12187 > view matrix models
    12188 > #21,0.67464,0.10107,0.73119,-97.944,-0.52359,0.76376,0.37753,-27.168,-0.5203,-0.63754,0.56818,424.64
    12189 
    12190 > view matrix models
    12191 > #21,0.63817,0.076934,0.76604,-91.364,-0.55017,0.7416,0.38386,-15.703,-0.53856,-0.66642,0.51559,452.43
    12192 
    12193 > view matrix models
    12194 > #21,0.8156,0.33852,0.46925,-126.41,-0.45267,0.87844,0.15308,-13.826,-0.36039,-0.33727,0.86969,213.61
    12195 
    12196 > ui mousemode right "rotate selected models"
    12197 
    12198 > view matrix models
    12199 > #21,0.96399,-0.2457,0.10178,96.753,0.21555,0.94601,0.24208,-239.39,-0.15577,-0.21143,0.9649,96.59
    12200 
    12201 > view matrix models
    12202 > #21,0.88787,0.44868,0.10179,-71.52,-0.42413,0.88395,-0.19685,76.462,-0.1783,0.1316,0.97513,6.4523
    12203 
    12204 > view matrix models
    12205 > #21,0.87685,0.46529,-0.12098,-9.6609,-0.48036,0.8582,-0.18097,94.255,0.019623,0.2168,0.97602,-70.851
    12206 
    12207 > view matrix models
    12208 > #21,0.84503,0.45156,-0.2864,49.798,-0.44088,0.89144,0.10467,-6.8007,0.30257,0.037816,0.95238,-92.417
    12209 
    12210 > view matrix models
    12211 > #21,0.8763,0.4523,-0.16591,6.8068,-0.44715,0.89176,0.06938,4.8586,0.17933,0.01339,0.9837,-61.141
    12212 
    12213 > ui mousemode right "translate selected models"
    12214 
    12215 > view matrix models
    12216 > #21,0.8763,0.4523,-0.16591,7.7609,-0.44715,0.89176,0.06938,33.698,0.17933,0.01339,0.9837,-63.046
    12217 
    12218 > view matrix models
    12219 > #21,0.8763,0.4523,-0.16591,11.927,-0.44715,0.89176,0.06938,0.32418,0.17933,0.01339,0.9837,-59.659
    12220 
    12221 > ui mousemode right "rotate selected models"
    12222 
    12223 > view matrix models
    12224 > #21,0.87736,0.47719,-0.050317,-28.021,-0.45683,0.86277,0.21663,-31.044,0.14679,-0.16708,0.97496,0.80283
    12225 
    12226 > view matrix models
    12227 > #21,0.89949,0.22051,-0.37721,128.81,-0.43606,0.50769,-0.74304,332.97,0.027653,0.83284,0.55282,-118.82
    12228 
    12229 > view matrix models
    12230 > #21,0.6141,0.77163,-0.16572,-3.682,-0.78752,0.61291,-0.06443,206.92,0.051854,0.17007,0.98407,-67.713
    12231 
    12232 > show #!20 models
    12233 
    12234 > hide #!20 models
    12235 
    12236 > show #14 models
    12237 
    12238 > hide #14 models
    12239 
    12240 > show #14 models
    12241 
    12242 > view matrix models
    12243 > #21,0.62161,0.77097,-0.1386,-13.258,-0.78327,0.61388,-0.098198,215.1,0.0093763,0.1696,0.98547,-56.424
    12244 
    12245 > view matrix models
    12246 > #21,0.61443,0.78897,-0.00059291,-55.467,-0.7809,0.60803,-0.14316,228.84,-0.11259,0.088427,0.9897,-2.3412
    12247 
    12248 > view matrix models
    12249 > #21,0.61932,0.77942,-0.094591,-27.456,-0.78481,0.61105,-0.10338,217.77,-0.022773,0.13826,0.99013,-40.471
    12250 
    12251 > view matrix models
    12252 > #21,0.61178,0.7792,-0.13625,-13.493,-0.7897,0.6116,-0.04815,203.23,0.045815,0.13706,0.9895,-58.631
    12253 
    12254 > ui mousemode right "translate selected models"
    12255 
    12256 > view matrix models
    12257 > #21,0.61178,0.7792,-0.13625,-3.561,-0.7897,0.6116,-0.04815,282.63,0.045815,0.13706,0.9895,-62.238
    12258 
    12259 > view matrix models
    12260 > #21,0.61178,0.7792,-0.13625,1.5298,-0.7897,0.6116,-0.04815,286.54,0.045815,0.13706,0.9895,-68.99
    12261 
    12262 > fitmap #21 inMap #2
    12263 
    12264 Fit map COPI_golph_linkage3_postprocess.mrc in map emdb 3720 using 58728
    12265 points 
    12266 correlation = 0.1315, correlation about mean = 0.07984, overlap = 363.5 
    12267 steps = 352, shift = 41.4, angle = 14.7 degrees 
    12268  
    12269 Position of COPI_golph_linkage3_postprocess.mrc (#21) relative to emdb 3720
    12270 (#2) coordinates: 
    12271 Matrix rotation and translation 
    12272 0.16511059 -0.95225260 0.25681409 278.85415999 
    12273 0.97917838 0.18944830 0.07293179 -166.73320724 
    12274 -0.11810248 0.23942499 0.96370508 -284.94197250 
    12275 Axis 0.08432108 0.18987784 0.97818013 
    12276 Axis point 219.08199993 126.15783603 0.00000000 
    12277 Rotation angle (degrees) 80.84348286 
    12278 Shift along axis -286.87023128 
    12279  
    12280 
    12281 > select subtract #21
    12282 
    12283 Nothing selected 
    12284 
    12285 > select add #21
    12286 
    12287 2 models selected 
    12288 
    12289 > select subtract #21
    12290 
    12291 Nothing selected 
    12292 
    12293 > select add #21
    12294 
    12295 2 models selected 
    12296 
    12297 > view matrix models
    12298 > #21,0.74086,0.66295,-0.10782,2.8904,-0.6653,0.70229,-0.2533,307.02,-0.092205,0.25939,0.96136,-60.661
    12299 
    12300 > view matrix models
    12301 > #21,0.74086,0.66295,-0.10782,41.238,-0.6653,0.70229,-0.2533,295.03,-0.092205,0.25939,0.96136,-61.116
    12302 
    12303 > hide #14 models
    12304 
    12305 > hide #3 models
    12306 
    12307 > ui mousemode right "rotate selected models"
    12308 
    12309 > view matrix models
    12310 > #21,0.64157,0.66046,-0.3901,149.25,-0.76644,0.53146,-0.36072,399.61,-0.030916,0.53041,0.84717,-119.07
    12311 
    12312 > view matrix models
    12313 > #21,0.62605,0.7716,-0.11263,44.28,-0.75233,0.55969,-0.34749,384.32,-0.20509,0.30228,0.93089,-33.401
    12314 
    12315 > ui mousemode right "translate selected models"
    12316 
    12317 > view matrix models
    12318 > #21,0.62605,0.7716,-0.11263,159.7,-0.75233,0.55969,-0.34749,178.66,-0.20509,0.30228,0.93089,-67.969
    12319 
    12320 > view matrix models
    12321 > #21,0.62605,0.7716,-0.11263,96.612,-0.75233,0.55969,-0.34749,145.01,-0.20509,0.30228,0.93089,-66.07
    12322 
    12323 > ui mousemode right "rotate selected models"
    12324 
    12325 > view matrix models
    12326 > #21,0.61094,0.58951,-0.52842,268.57,-0.72762,0.1551,-0.66822,339.65,-0.31196,0.79273,0.5237,-54.62
    12327 
    12328 > view matrix models
    12329 > #21,0.67108,-0.25232,0.69712,132.66,0.74045,0.27512,-0.61322,-108.19,-0.037062,0.92771,0.37146,-122.86
    12330 
    12331 > view matrix models
    12332 > #21,0.6657,-0.74269,0.072507,445.28,0.70491,0.59399,-0.38766,-249.48,0.24484,0.30917,0.91895,-186.99
    12333 
    12334 > view matrix models
    12335 > #21,0.56881,-0.75008,-0.3374,590.28,0.70397,0.65614,-0.27188,-299.08,0.42531,-0.082869,0.90125,-124.37
    12336 
    12337 > view matrix models
    12338 > #21,0.7031,-0.70799,-0.066332,465.16,0.54326,0.59501,-0.59231,-147.54,0.45881,0.38042,0.80298,-231.62
    12339 
    12340 > view matrix models
    12341 > #21,0.69505,-0.58596,0.41661,296.74,0.66233,0.74727,-0.053969,-374.54,-0.2797,0.31345,0.90748,-42.142
    12342 
    12343 > view matrix models
    12344 > #21,0.52953,0.81621,0.23108,12.954,-0.67392,0.57022,-0.46976,155.6,-0.51519,0.093022,0.85201,97.72
    12345 
    12346 > view matrix models
    12347 > #21,0.87105,0.29814,0.39037,15.693,-0.16527,0.92628,-0.33866,-117.04,-0.46256,0.23047,0.85611,44.821
    12348 
    12349 > view matrix models
    12350 > #21,0.96132,0.26759,0.065255,91.934,-0.26218,0.96162,-0.080898,-173.61,-0.084399,0.06066,0.99458,-51.273
    12351 
    12352 > view matrix models
    12353 > #21,0.91601,0.39302,0.080397,65.82,-0.38782,0.91883,-0.073065,-130,-0.10259,0.035748,0.99408,-39.4
    12354 
    12355 > view matrix models
    12356 > #21,0.91503,0.39345,0.088973,63.53,-0.38641,0.91825,-0.08662,-126.37,-0.11578,0.044879,0.99226,-37.777
    12357 
    12358 > ui mousemode right "translate selected models"
    12359 
    12360 > view matrix models
    12361 > #21,0.91503,0.39345,0.088973,-19.059,-0.38641,0.91825,-0.08662,121.8,-0.11578,0.044879,0.99226,-21.386
    12362 
    12363 > view matrix models
    12364 > #21,0.91503,0.39345,0.088973,-47.686,-0.38641,0.91825,-0.08662,118.33,-0.11578,0.044879,0.99226,-1.0662
    12365 
    12366 > view matrix models
    12367 > #21,0.91503,0.39345,0.088973,-64.92,-0.38641,0.91825,-0.08662,106.11,-0.11578,0.044879,0.99226,18.924
    12368 
    12369 > fitmap #21 inMap #2
    12370 
    12371 Fit map COPI_golph_linkage3_postprocess.mrc in map emdb 3720 using 58728
    12372 points 
    12373 correlation = 0.3068, correlation about mean = 0.05618, overlap = 925.7 
    12374 steps = 536, shift = 63.9, angle = 28.5 degrees 
    12375  
    12376 Position of COPI_golph_linkage3_postprocess.mrc (#21) relative to emdb 3720
    12377 (#2) coordinates: 
    12378 Matrix rotation and translation 
    12379 -0.32253487 -0.83356760 0.44848222 337.87463973 
    12380 0.94497750 -0.25619477 0.20342508 -53.16974935 
    12381 -0.05466975 0.48941729 0.87033437 -358.85998503 
    12382 Axis 0.15290911 0.26901615 0.95092014 
    12383 Axis point 187.41204275 163.73321980 0.00000000 
    12384 Rotation angle (degrees) 110.74427733 
    12385 Shift along axis -303.88659719 
    12386  
    12387 
    12388 > hide #!2 models
    12389 
    12390 > show #!2 models
    12391 
    12392 > hide #!2 models
    12393 
    12394 > select subtract #21
    12395 
    12396 Nothing selected 
    12397 
    12398 > volume #21 level 0.6057
    12399 
    12400 > show #3 models
    12401 
    12402 > show #4 models
    12403 
    12404 > hide #4 models
    12405 
    12406 > show #5 models
    12407 
    12408 > show #7 models
    12409 
    12410 > show #!9 models
    12411 
    12412 > hide #!21 models
    12413 
    12414 > hide #!9 models
    12415 
    12416 > hide #8 models
    12417 
    12418 > hide #7 models
    12419 
    12420 > hide #6 models
    12421 
    12422 > hide #5 models
    12423 
    12424 > hide #3 models
    12425 
    12426 > show #!1 models
    12427 
    12428 > show #!2 models
    12429 
    12430 > hide #!2 models
    12431 
    12432 > hide #!1 models
    12433 
    12434 > show #!2 models
    12435 
    12436 > show #!15 models
    12437 
    12438 > show #!16 models
    12439 
    12440 > show #!17 models
    12441 
    12442 > show #13 models
    12443 
    12444 > hide #!17 models
    12445 
    12446 > hide #!16 models
    12447 
    12448 > hide #13 models
    12449 
    12450 > hide #!2 models
    12451 
    12452 > show #!17 models
    12453 
    12454 > volume #15 level 0.398
    12455 
    12456 > hide #!17 models
    12457 
    12458 > volume #15 level 0.2746
    12459 
    12460 > show #!17 models
    12461 
    12462 > hide #!15 models
    12463 
    12464 > show #!15 models
    12465 
    12466 > volume #15 level 0.3678
    12467 
    12468 > show #3 models
    12469 
    12470 > show #4 models
    12471 
    12472 > hide #4 models
    12473 
    12474 > show #5 models
    12475 
    12476 > show #6 models
    12477 
    12478 > show #7 models
    12479 
    12480 > show #8 models
    12481 
    12482 > show #!9 models
    12483 
    12484 > show #11 models
    12485 
    12486 > show #13 models
    12487 
    12488 > show #14 models
    12489 
    12490 > hide #!17 models
    12491 
    12492 > show #!2 models
    12493 
    12494 > hide #!2 models
    12495 
    12496 > hide #!15 models
    12497 
    12498 > hide #3 models
    12499 
    12500 > show #3 models
    12501 
    12502 > hide #3 models
    12503 
    12504 > show #3 models
    12505 
    12506 > show #!18 models
    12507 
    12508 > show #!2 models
    12509 
    12510 > hide #!2 models
    12511 
    12512 > show #!20 models
    12513 
    12514 > hide #!18 models
    12515 
    12516 > show #!18 models
    12517 
    12518 > hide #!20 models
    12519 
    12520 > show #!20 models
    12521 
    12522 > hide #!20 models
    12523 
    12524 > show #!20 models
    12525 
    12526 > hide #!18 models
    12527 
    12528 > show #!18 models
    12529 
    12530 > hide #!18 models
    12531 
    12532 > hide #!20 models
    12533 
    12534 > show #!21 models
    12535 
    12536 > show #!2 models
    12537 
    12538 > hide #!21 models
    12539 
    12540 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    12541 > resources/Processing/COPI-Golph_GT/COPI_golph_linkage4_postprocess.mrc"
    12542 
    12543 Opened COPI_golph_linkage4_postprocess.mrc as #22, grid size 160,160,160,
    12544 pixel 3.4, shown at level 0.633, step 1, values float32 
    12545 
    12546 > volume #22 level 0.4998
    12547 
    12548 > select add #22
    12549 
    12550 2 models selected 
    12551 
    12552 > view matrix models #22,1,0,0,86.864,0,1,0,-163.53,0,0,1,-69.833
    12553 
    12554 > color #22 #e0ecffff models
    12555 
    12556 > color #22 #e9f5ffff models
    12557 
    12558 > color #22 #b6c0c8ff models
    12559 
    12560 > color #22 #b6c0c8a8 models
    12561 
    12562 > ui mousemode right "rotate selected models"
    12563 
    12564 > view matrix models
    12565 > #22,0.78147,0.50969,0.35989,-100.59,-0.15335,0.71601,-0.68104,160.15,-0.6048,0.47702,0.6377,73.713
    12566 
    12567 > view matrix models
    12568 > #22,0.60302,0.64176,0.47383,-122.16,-0.25703,0.71861,-0.64617,177.24,-0.75519,0.26786,0.59828,183.56
    12569 
    12570 > ui mousemode right "translate selected models"
    12571 
    12572 > view matrix models
    12573 > #22,0.60302,0.64176,0.47383,-180.56,-0.25703,0.71861,-0.64617,159.86,-0.75519,0.26786,0.59828,231.55
    12574 
    12575 > ui mousemode right "rotate selected models"
    12576 
    12577 > view matrix models
    12578 > #22,0.28964,0.94666,0.14124,-78.437,-0.87363,0.32176,-0.36503,351.72,-0.391,-0.017664,0.92022,113.5
    12579 
    12580 > ui mousemode right "translate selected models"
    12581 
    12582 > view matrix models
    12583 > #22,0.28964,0.94666,0.14124,-122.45,-0.87363,0.32176,-0.36503,500.17,-0.391,-0.017664,0.92022,134.3
    12584 
    12585 > view matrix models
    12586 > #22,0.28964,0.94666,0.14124,-182.04,-0.87363,0.32176,-0.36503,476.3,-0.391,-0.017664,0.92022,172.38
    12587 
    12588 > view matrix models
    12589 > #22,0.28964,0.94666,0.14124,-66.429,-0.87363,0.32176,-0.36503,393.2,-0.391,-0.017664,0.92022,104.2
    12590 
    12591 > ui mousemode right "rotate selected models"
    12592 
    12593 > view matrix models
    12594 > #22,-0.020676,0.93533,0.35317,-42.385,-0.88978,0.14387,-0.43312,466.54,-0.45592,-0.3232,0.82926,232.51
    12595 
    12596 > view matrix models
    12597 > #22,0.22371,0.90492,0.36205,-103.37,-0.97381,0.22303,0.044274,324.54,-0.040683,-0.36247,0.93111,99.469
    12598 
    12599 > view matrix models
    12600 > #22,-0.3087,0.70623,0.63713,13.335,-0.89783,0.0047913,-0.44032,508.82,-0.31402,-0.70796,0.6326,357.79
    12601 
    12602 > view matrix models
    12603 > #22,0.026496,0.99882,-0.040736,45.701,-0.99955,0.02704,0.01285,394.43,0.013936,0.040377,0.99909,-45.666
    12604 
    12605 > view matrix models
    12606 > #22,-0.052732,0.99411,0.094684,27.925,-0.99621,-0.0458,-0.073945,439.44,-0.069173,-0.098224,0.99276,16.677
    12607 
    12608 > ui mousemode right "translate selected models"
    12609 
    12610 > view matrix models
    12611 > #22,-0.052732,0.99411,0.094684,-41.077,-0.99621,-0.0458,-0.073945,493.16,-0.069173,-0.098224,0.99276,57.186
    12612 
    12613 > ui mousemode right "rotate selected models"
    12614 
    12615 > view matrix models
    12616 > #22,-0.14698,0.89014,0.43133,-88.104,-0.98704,-0.16037,-0.005392,501.32,0.064374,-0.42653,0.90218,137.5
    12617 
    12618 > ui mousemode right "translate selected models"
    12619 
    12620 > view matrix models
    12621 > #22,-0.14698,0.89014,0.43133,-83.727,-0.98704,-0.16037,-0.005392,495.71,0.064374,-0.42653,0.90218,133.33
    12622 
    12623 > ui mousemode right "rotate selected models"
    12624 
    12625 > view matrix models
    12626 > #22,-0.20349,0.87067,0.44781,-67.963,-0.91791,-0.010519,-0.39665,553.47,-0.34064,-0.49176,0.80133,291.78
    12627 
    12628 > ui mousemode right "translate selected models"
    12629 
    12630 > view matrix models
    12631 > #22,-0.20349,0.87067,0.44781,-69.471,-0.91791,-0.010519,-0.39665,595.62,-0.34064,-0.49176,0.80133,324.66
    12632 
    12633 > view matrix models
    12634 > #22,-0.20349,0.87067,0.44781,-58.843,-0.91791,-0.010519,-0.39665,574.5,-0.34064,-0.49176,0.80133,304.63
    12635 
    12636 > ui mousemode right "translate selected models"
    12637 
    12638 > view matrix models
    12639 > #22,-0.20349,0.87067,0.44781,-115.69,-0.91791,-0.010519,-0.39665,427.17,-0.34064,-0.49176,0.80133,333.06
    12640 
    12641 > ui mousemode right "rotate selected models"
    12642 
    12643 > view matrix models
    12644 > #22,-0.14719,0.55024,0.82193,-155.98,-0.98682,-0.025227,-0.15983,378.87,-0.067212,-0.83462,0.5467,428.46
    12645 
    12646 > view matrix models
    12647 > #22,-0.53052,0.47552,0.70173,4.9543,-0.84215,-0.38997,-0.37242,502.71,0.096558,-0.78854,0.60735,353.05
    12648 
    12649 > view matrix models
    12650 > #22,-0.6984,0.54898,0.4592,103.49,-0.70756,-0.43304,-0.55842,533.61,-0.10771,-0.71491,0.69087,363.57
    12651 
    12652 > view matrix models
    12653 > #22,-0.67565,0.6076,0.41751,93.823,-0.71802,-0.41395,-0.55954,531.59,-0.16715,-0.67784,0.71596,362.14
    12654 
    12655 > view matrix models
    12656 > #22,-0.80567,0.57276,-0.15112,309.47,0.22246,0.056121,-0.97333,271.31,-0.549,-0.8178,-0.17263,771.13
    12657 
    12658 > view matrix models
    12659 > #22,-0.79633,0.079496,0.59961,216.04,-0.55232,-0.49969,-0.66727,542.15,0.24658,-0.86255,0.44182,382.03
    12660 
    12661 > view matrix models
    12662 > #22,-0.67539,0.70693,0.21001,128.96,-0.59312,-0.68993,0.41497,280.24,0.43825,0.1557,0.88527,-80.968
    12663 
    12664 > view matrix models
    12665 > #22,-0.71777,0.65524,-0.23553,288.36,-0.50949,-0.72481,-0.46376,530.76,-0.47459,-0.21287,0.85408,277.69
    12666 
    12667 > view matrix models
    12668 > #22,-0.95603,0.2816,0.081864,359.89,-0.24094,-0.5951,-0.76668,513.14,-0.16718,-0.7527,0.63679,406.32
    12669 
    12670 > view matrix models
    12671 > #22,-0.63322,-0.44634,-0.63231,684.79,0.66029,-0.73776,-0.14046,118.4,-0.4038,-0.50645,0.76188,366.12
    12672 
    12673 > view matrix models
    12674 > #22,-0.90532,-0.34407,-0.249,615.99,0.18442,-0.84658,0.4993,85.715,-0.38259,0.4061,0.82988,91.111
    12675 
    12676 > view matrix models
    12677 > #22,-0.96419,-0.26357,0.029355,526.52,0.24577,-0.84646,0.47234,77.053,-0.099647,0.46264,0.88093,-16.748
    12678 
    12679 > view matrix models
    12680 > #22,-0.9526,-0.30268,-0.030562,552.02,0.25997,-0.8621,0.43496,88.669,-0.158,0.4064,0.89993,8.7874
    12681 
    12682 > ui mousemode right "translate selected models"
    12683 
    12684 > view matrix models
    12685 > #22,-0.9526,-0.30268,-0.030562,548.24,0.25997,-0.8621,0.43496,360.71,-0.158,0.4064,0.89993,-35.334
    12686 
    12687 > ui mousemode right "rotate selected models"
    12688 
    12689 > view matrix models
    12690 > #22,-0.99238,-0.098069,-0.074577,516.51,0.065742,-0.93344,0.35266,457.81,-0.1042,0.34507,0.93278,-43.137
    12691 
    12692 > view matrix models
    12693 > #22,-0.9771,-0.13873,-0.16136,549.49,0.090768,-0.95754,0.27364,481.28,-0.19247,0.25272,0.9482,1.4701
    12694 
    12695 > view matrix models
    12696 > #22,-0.97138,-0.17322,-0.16255,557.69,0.1406,-0.97081,0.19431,495.13,-0.19147,0.16589,0.96738,19.115
    12697 
    12698 > fitmap #22 inMap #2
    12699 
    12700 Fit map COPI_golph_linkage4_postprocess.mrc in map emdb 3720 using 142370
    12701 points 
    12702 correlation = 0.105, correlation about mean = 0.1014, overlap = 418.9 
    12703 steps = 456, shift = 43.7, angle = 18 degrees 
    12704  
    12705 Position of COPI_golph_linkage4_postprocess.mrc (#22) relative to emdb 3720
    12706 (#2) coordinates: 
    12707 Matrix rotation and translation 
    12708 0.18065176 0.97553304 -0.12530053 -137.14370480 
    12709 -0.98279485 0.18402446 0.01578860 200.53879943 
    12710 0.03846067 0.12029247 0.99199319 -248.35089122 
    12711 Axis 0.05310318 -0.08321454 -0.99511577 
    12712 Axis point 56.64088445 200.30404249 0.00000000 
    12713 Rotation angle (degrees) 79.72722380 
    12714 Shift along axis 223.16737748 
    12715  
    12716 
    12717 > fitmap #22 inMap #2
    12718 
    12719 Fit map COPI_golph_linkage4_postprocess.mrc in map emdb 3720 using 142370
    12720 points 
    12721 correlation = 0.105, correlation about mean = 0.1014, overlap = 418.9 
    12722 steps = 84, shift = 0.0353, angle = 0.0059 degrees 
    12723  
    12724 Position of COPI_golph_linkage4_postprocess.mrc (#22) relative to emdb 3720
    12725 (#2) coordinates: 
    12726 Matrix rotation and translation 
    12727 0.18070188 0.97552181 -0.12531571 -137.12458394 
    12728 -0.98278214 0.18408535 0.01586940 200.47306053 
    12729 0.03854973 0.12029041 0.99198998 -248.35909451 
    12730 Axis 0.05306161 -0.08326834 -0.99511349 
    12731 Axis point 56.63115992 200.26664882 0.00000000 
    12732 Rotation angle (degrees) 79.72408513 
    12733 Shift along axis 223.17637501 
    12734  
    12735 
    12736 > view matrix models
    12737 > #22,-0.93936,-0.33863,-0.054164,554.37,0.30927,-0.90475,0.29287,444.96,-0.14818,0.25836,0.95462,-2.8011
    12738 
    12739 > ui mousemode right "translate selected models"
    12740 
    12741 > view matrix models
    12742 > #22,-0.93936,-0.33863,-0.054164,564.72,0.30927,-0.90475,0.29287,411.18,-0.14818,0.25836,0.95462,-19.097
    12743 
    12744 > view matrix models
    12745 > #22,-0.93936,-0.33863,-0.054164,564.29,0.30927,-0.90475,0.29287,411.41,-0.14818,0.25836,0.95462,-18.8
    12746 
    12747 > ui mousemode right "rotate selected models"
    12748 
    12749 > view matrix models
    12750 > #22,-0.89677,-0.28818,-0.33579,623.47,0.18111,-0.93142,0.31568,446.76,-0.40373,0.22228,0.88746,80.848
    12751 
    12752 > ui mousemode right "translate selected models"
    12753 
    12754 > view matrix models
    12755 > #22,-0.89677,-0.28818,-0.33579,649.35,0.18111,-0.93142,0.31568,428.9,-0.40373,0.22228,0.88746,53.43
    12756 
    12757 > view matrix models
    12758 > #22,-0.89677,-0.28818,-0.33579,645.65,0.18111,-0.93142,0.31568,429.61,-0.40373,0.22228,0.88746,54.541
    12759 
    12760 > view matrix models
    12761 > #22,-0.89677,-0.28818,-0.33579,645.51,0.18111,-0.93142,0.31568,435.86,-0.40373,0.22228,0.88746,31.241
    12762 
    12763 > ui mousemode right "rotate selected models"
    12764 
    12765 > view matrix models
    12766 > #22,-0.8453,-0.32892,-0.42105,668.18,0.20796,-0.92845,0.30779,430.11,-0.49216,0.17261,0.85322,79.168
    12767 
    12768 > view matrix models
    12769 > #22,-0.8556,-0.21068,-0.47282,654.29,0.10806,-0.966,0.23488,489.46,-0.50623,0.14987,0.84927,90.385
    12770 
    12771 > view matrix models
    12772 > #22,-0.81311,-0.2328,-0.53354,666.97,0.13587,-0.96713,0.21493,488.18,-0.56604,0.10227,0.81801,129.05
    12773 
    12774 > ui mousemode right "translate selected models"
    12775 
    12776 > view matrix models
    12777 > #22,-0.81311,-0.2328,-0.53354,684.47,0.13587,-0.96713,0.21493,485.98,-0.56604,0.10227,0.81801,126.21
    12778 
    12779 > ui mousemode right "rotate selected models"
    12780 
    12781 > view matrix models
    12782 > #22,-0.76856,-0.25226,-0.58794,693.97,0.15952,-0.96552,0.20574,481.85,-0.61957,0.064337,0.7823,161.86
    12783 
    12784 > ui mousemode right "translate selected models"
    12785 
    12786 > view matrix models
    12787 > #22,-0.76856,-0.25226,-0.58794,703.77,0.15952,-0.96552,0.20574,483.66,-0.61957,0.064337,0.7823,160.74
    12788 
    12789 > fitmap #22 inMap #2
    12790 
    12791 Fit map COPI_golph_linkage4_postprocess.mrc in map emdb 3720 using 142370
    12792 points 
    12793 correlation = 0.3059, correlation about mean = 0.2109, overlap = 1480 
    12794 steps = 204, shift = 13.8, angle = 5.22 degrees 
    12795  
    12796 Position of COPI_golph_linkage4_postprocess.mrc (#22) relative to emdb 3720
    12797 (#2) coordinates: 
    12798 Matrix rotation and translation 
    12799 0.28958463 0.93486676 0.20534089 -256.62492522 
    12800 -0.76616902 0.35499199 -0.53569181 321.19087280 
    12801 -0.57369484 -0.00219771 0.81906617 -72.53866158 
    12802 Axis 0.27421718 0.40042613 -0.87433624 
    12803 Axis point 57.62625816 353.98226828 0.00000000 
    12804 Rotation angle (degrees) 76.59567126 
    12805 Shift along axis 121.66543499 
    12806  
    12807 
    12808 > fitmap #22 inMap #2
    12809 
    12810 Fit map COPI_golph_linkage4_postprocess.mrc in map emdb 3720 using 142370
    12811 points 
    12812 correlation = 0.3059, correlation about mean = 0.2109, overlap = 1480 
    12813 steps = 88, shift = 0.0174, angle = 0.00731 degrees 
    12814  
    12815 Position of COPI_golph_linkage4_postprocess.mrc (#22) relative to emdb 3720
    12816 (#2) coordinates: 
    12817 Matrix rotation and translation 
    12818 0.28964240 0.93485647 0.20530625 -256.62582679 
    12819 -0.76622235 0.35501920 -0.53559749 321.16894392 
    12820 -0.57359444 -0.00217850 0.81913654 -72.57595607 
    12821 Axis 0.27418379 0.40036434 -0.87437501 
    12822 Axis point 57.61447724 353.97470394 0.00000000 
    12823 Rotation angle (degrees) 76.59109653 
    12824 Shift along axis 121.68055268 
    12825  
    12826 
    12827 > fitmap #22 inMap #2
    12828 
    12829 Fit map COPI_golph_linkage4_postprocess.mrc in map emdb 3720 using 142370
    12830 points 
    12831 correlation = 0.3059, correlation about mean = 0.2109, overlap = 1480 
    12832 steps = 100, shift = 0.00774, angle = 0.00167 degrees 
    12833  
    12834 Position of COPI_golph_linkage4_postprocess.mrc (#22) relative to emdb 3720
    12835 (#2) coordinates: 
    12836 Matrix rotation and translation 
    12837 0.28966773 0.93485155 0.20529292 -256.62196414 
    12838 -0.76621992 0.35503229 -0.53559230 321.16811315 
    12839 -0.57358491 -0.00215572 0.81914327 -72.58416307 
    12840 Axis 0.27419434 0.40035480 -0.87437606 
    12841 Axis point 57.61876662 353.97615488 0.00000000 
    12842 Rotation angle (degrees) 76.58976647 
    12843 Shift along axis 121.68275949 
    12844  
    12845 
    12846 > view matrix models
    12847 > #22,-0.78276,-0.20228,-0.58853,689.39,0.16549,-0.97931,0.11649,525.29,-0.59992,-0.0062104,0.80004,164.24
    12848 
    12849 > fitmap #22 inMap #2
    12850 
    12851 Fit map COPI_golph_linkage4_postprocess.mrc in map emdb 3720 using 142370
    12852 points 
    12853 correlation = 0.3059, correlation about mean = 0.2109, overlap = 1480 
    12854 steps = 184, shift = 0.712, angle = 0.00605 degrees 
    12855  
    12856 Position of COPI_golph_linkage4_postprocess.mrc (#22) relative to emdb 3720
    12857 (#2) coordinates: 
    12858 Matrix rotation and translation 
    12859 0.28964597 0.93484993 0.20533098 -256.64138080 
    12860 -0.76616354 0.35503650 -0.53567015 321.20226277 
    12861 -0.57367120 -0.00216241 0.81908282 -72.54553467 
    12862 Axis 0.27422830 0.40041489 -0.87433789 
    12863 Axis point 57.63823332 354.01292382 0.00000000 
    12864 Rotation angle (degrees) 76.59206352 
    12865 Shift along axis 121.66514833 
    12866  
    12867 
    12868 > fitmap #22 inMap #2
    12869 
    12870 Fit map COPI_golph_linkage4_postprocess.mrc in map emdb 3720 using 142370
    12871 points 
    12872 correlation = 0.3059, correlation about mean = 0.2109, overlap = 1480 
    12873 steps = 148, shift = 0.0325, angle = 0.00987 degrees 
    12874  
    12875 Position of COPI_golph_linkage4_postprocess.mrc (#22) relative to emdb 3720
    12876 (#2) coordinates: 
    12877 Matrix rotation and translation 
    12878 0.28961107 0.93485553 0.20535473 -256.63781807 
    12879 -0.76607236 0.35502191 -0.53581021 321.21240562 
    12880 -0.57381057 -0.00214001 0.81898525 -72.51270302 
    12881 Axis 0.27430686 0.40049152 -0.87427815 
    12882 Axis point 57.64670127 354.01889608 0.00000000 
    12883 Rotation angle (degrees) 76.59639446 
    12884 Shift along axis 121.64160182 
    12885  
    12886 
    12887 > select subtract #22
    12888 
    12889 Nothing selected 
    12890 
    12891 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and
    12892 > resources/Processing/COPI-Golph_GT/Linkage_4_fitting_Golph_AF_RT.cxs"
    12893 
    12894 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    12895 > resources/Processing/References/emd_2989_2015_linkage4.map"
    12896 
    12897 Opened emd_2989_2015_linkage4.map as #23, grid size 200,200,200, pixel 2.02,
    12898 shown at level 3.51, step 1, values float32 
    12899 
    12900 > select add #23
    12901 
    12902 2 models selected 
    12903 
    12904 > hide #14 models
    12905 
    12906 > hide #13 models
    12907 
    12908 > hide #11 models
    12909 
    12910 > hide #!9 models
    12911 
    12912 > hide #8 models
    12913 
    12914 > hide #7 models
    12915 
    12916 > hide #6 models
    12917 
    12918 > hide #5 models
    12919 
    12920 > hide #3 models
    12921 
    12922 > hide #!2 models
    12923 
    12924 > volume #23 level 1.736
    12925 
    12926 > view matrix models #23,1,0,0,295.97,0,1,0,347.81,0,0,1,255.97
    12927 
    12928 > view matrix models #23,1,0,0,252.37,0,1,0,338.98,0,0,1,288.4
    12929 
    12930 > ui mousemode right "rotate selected models"
    12931 
    12932 > view matrix models
    12933 > #23,-0.34072,0.91035,-0.23488,246.73,-0.9102,-0.38198,-0.16012,331.16,-0.23548,0.15924,0.95875,287.41
    12934 
    12935 > view matrix models
    12936 > #23,-0.90118,0.19951,-0.3848,241.1,-0.34473,-0.86806,0.35727,342.26,-0.26275,0.45462,0.85105,285.65
    12937 
    12938 > view matrix models
    12939 > #23,-0.85105,0.18622,-0.49095,238.9,-0.45999,-0.7153,0.52607,345.96,-0.25321,0.67355,0.69442,282.76
    12940 
    12941 > view matrix models
    12942 > #23,-0.94655,-0.003175,-0.32253,241.94,-0.056235,-0.98301,0.17471,338.66,-0.31761,0.18351,0.93029,286.7
    12943 
    12944 > view matrix models
    12945 > #23,-0.80832,0.00038823,-0.58875,236.52,-0.12002,-0.97911,0.16414,338.33,-0.57638,0.20334,0.79148,283.31
    12946 
    12947 > view matrix models
    12948 > #23,-0.93595,0.069976,-0.34511,241.63,-0.11716,-0.9861,0.11781,337.33,-0.33207,0.1507,0.93114,286.63
    12949 
    12950 > view matrix models
    12951 > #23,-0.92252,-0.0074895,-0.38588,240.63,-0.12049,-0.94425,0.30639,341.43,-0.36666,0.32914,0.87019,285.62
    12952 
    12953 > view matrix models
    12954 > #23,-0.83624,0.18925,-0.51467,238.43,-0.076264,-0.96958,-0.2326,329.96,-0.54303,-0.15526,0.82524,283.37
    12955 
    12956 > view matrix models
    12957 > #23,-0.88583,0.03525,-0.46266,239.14,-0.093997,-0.99007,0.10454,337.08,-0.45438,0.13609,0.88035,285.29
    12958 
    12959 > view matrix models
    12960 > #23,-0.79009,-0.25551,-0.5572,236.72,0.21743,-0.9667,0.13498,338.35,-0.57313,-0.014509,0.81933,283.47
    12961 
    12962 > fitmap #23 inMap #22
    12963 
    12964 Fit map emd_2989_2015_linkage4.map in map COPI_golph_linkage4_postprocess.mrc
    12965 using 407794 points 
    12966 correlation = 0.9534, correlation about mean = 0.4429, overlap = 6.694e+05 
    12967 steps = 84, shift = 30.2, angle = 4.21 degrees 
    12968  
    12969 Position of emd_2989_2015_linkage4.map (#23) relative to
    12970 COPI_golph_linkage4_postprocess.mrc (#22) coordinates: 
    12971 Matrix rotation and translation 
    12972 0.99992754 -0.01202932 -0.00045014 272.13051854 
    12973 0.01202914 0.99992757 -0.00039616 272.13870425 
    12974 0.00045487 0.00039072 0.99999982 362.71293920 
    12975 Axis 0.03266654 -0.03757050 0.99875991 
    12976 Axis point -23619.40313077 21784.41257175 0.00000000 
    12977 Rotation angle (degrees) 0.69009646 
    12978 Shift along axis 360.92831745 
    12979  
    12980 
    12981 > select subtract #23
    12982 
    12983 Nothing selected 
    12984 
    12985 > hide #!23 models
    12986 
    12987 > show #!23 models
    12988 
    12989 > hide #!23 models
    12990 
    12991 > show #!23 models
    12992 
    12993 > hide #!23 models
    12994 
    12995 > show #!23 models
    12996 
    12997 > hide #!23 models
    12998 
    12999 > show #!23 models
    13000 
    13001 > hide #!23 models
    13002 
    13003 > show #!23 models
    13004 
    13005 > hide #!23 models
    13006 
    13007 > show #!23 models
    13008 
    13009 > show #!2 models
    13010 
    13011 > hide #!2 models
    13012 
    13013 > show #!2 models
    13014 
    13015 > hide #!23 models
    13016 
    13017 > show #!23 models
    13018 
    13019 > hide #!23 models
    13020 
    13021 > show #!23 models
    13022 
    13023 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    13024 > resources/Processing/References/emd_3724_2017_linkage4.map"
    13025 
    13026 Opened emd_3724_2017_linkage4.map as #24, grid size 212,212,212, pixel 1.78,
    13027 shown at level 0.0902, step 1, values float32 
    13028 
    13029 > hide #!23 models
    13030 
    13031 > select add #24
    13032 
    13033 2 models selected 
    13034 
    13035 > volume #24 level 0.05394
    13036 
    13037 > view matrix models
    13038 > #24,0.78919,0.23102,-0.56904,99.742,-0.57051,0.61881,-0.53999,277.58,0.22738,0.7508,0.62016,-115.18
    13039 
    13040 > view matrix models
    13041 > #24,0.78489,-0.47897,-0.39311,202.3,-0.091465,0.53791,-0.83803,256.77,0.61285,0.69372,0.37839,-133.08
    13042 
    13043 > view matrix models
    13044 > #24,0.83222,-0.29524,-0.46929,172.63,-0.21993,0.60119,-0.76824,256.36,0.50895,0.74256,0.4354,-133.08
    13045 
    13046 > view matrix models
    13047 > #24,0.95159,-0.26646,-0.15322,87.201,0.21686,0.93528,-0.27968,22.214,0.21783,0.23291,0.94779,-75.429
    13048 
    13049 > ui mousemode right "translate selected models"
    13050 
    13051 > view matrix models
    13052 > #24,0.95159,-0.26646,-0.15322,153.28,0.21686,0.93528,-0.27968,174.12,0.21783,0.23291,0.94779,46.043
    13053 
    13054 > ui mousemode right "rotate selected models"
    13055 
    13056 > view matrix models
    13057 > #24,0.71759,-0.051309,-0.69458,255.34,0.34165,0.89498,0.28686,55.113,0.60691,-0.44315,0.65975,152.49
    13058 
    13059 > ui mousemode right "translate selected models"
    13060 
    13061 > view matrix models
    13062 > #24,0.71759,-0.051309,-0.69458,221.99,0.34165,0.89498,0.28686,49.003,0.60691,-0.44315,0.65975,138.27
    13063 
    13064 > fitmap #24 inMap #22
    13065 
    13066 Fit map emd_3724_2017_linkage4.map in map COPI_golph_linkage4_postprocess.mrc
    13067 using 315646 points 
    13068 correlation = 0.9467, correlation about mean = 0.3516, overlap = 1.568e+04 
    13069 steps = 104, shift = 11.9, angle = 14.3 degrees 
    13070  
    13071 Position of emd_3724_2017_linkage4.map (#24) relative to
    13072 COPI_golph_linkage4_postprocess.mrc (#22) coordinates: 
    13073 Matrix rotation and translation 
    13074 -0.85806817 0.51353579 0.00010753 337.14467445 
    13075 -0.51353580 -0.85806817 -0.00005229 530.96482694 
    13076 0.00006542 -0.00010009 1.00000000 166.67646029 
    13077 Axis -0.00004654 0.00004100 -1.00000000 
    13078 Axis point 241.94384893 218.89661548 0.00000000 
    13079 Rotation angle (degrees) 149.10036440 
    13080 Shift along axis -166.67037970 
    13081  
    13082 
    13083 > select subtract #24
    13084 
    13085 Nothing selected 
    13086 
    13087 > select add #24
    13088 
    13089 2 models selected 
    13090 
    13091 > select subtract #24
    13092 
    13093 Nothing selected 
    13094 
    13095 > hide #!24 models
    13096 
    13097 > show #!24 models
    13098 
    13099 > hide #!24 models
    13100 
    13101 > show #!24 models
    13102 
    13103 > hide #!2 models
    13104 
    13105 > hide #!22 models
    13106 
    13107 > volume #24 level 0.03927
    13108 
    13109 > show #!22 models
    13110 
    13111 > hide #!24 models
    13112 
    13113 > show #!24 models
    13114 
    13115 > hide #!24 models
    13116 
    13117 > show #!24 models
    13118 
    13119 > hide #!24 models
    13120 
    13121 > show #!24 models
    13122 
    13123 > show #!2 models
    13124 
    13125 > hide #!24 models
    13126 
    13127 > show #!24 models
    13128 
    13129 > hide #!24 models
    13130 
    13131 > hide #!22 models
    13132 
    13133 > show #!22 models
    13134 
    13135 > hide #!22 models
    13136 
    13137 > show #!21 models
    13138 
    13139 > show #3 models
    13140 
    13141 > show #4 models
    13142 
    13143 > show #5 models
    13144 
    13145 > show #6 models
    13146 
    13147 > show #7 models
    13148 
    13149 > show #8 models
    13150 
    13151 > show #!9 models
    13152 
    13153 > show #10 models
    13154 
    13155 > show #11 models
    13156 
    13157 > show #12 models
    13158 
    13159 > show #13 models
    13160 
    13161 > show #14 models
    13162 
    13163 > hide #!21 models
    13164 
    13165 > hide #14 models
    13166 
    13167 > hide #13 models
    13168 
    13169 > hide #12 models
    13170 
    13171 > hide #11 models
    13172 
    13173 > hide #10 models
    13174 
    13175 > hide #!9 models
    13176 
    13177 > hide #8 models
    13178 
    13179 > hide #7 models
    13180 
    13181 > hide #6 models
    13182 
    13183 > hide #5 models
    13184 
    13185 > hide #4 models
    13186 
    13187 > hide #3 models
    13188 
    13189 > hide #!2 models
    13190 
    13191 > show #!2 models
    13192 
    13193 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    13194 > resources/Processing/References/emd_3720_2017_leaf.map"
    13195 
    13196 Opened emd_3720_2017_leaf.map as #25, grid size 128,128,128, pixel 1.78, shown
    13197 at level 0.226, step 1, values float32 
    13198 
    13199 > volume #25 level 0.1454
    13200 
    13201 > color #2 #929292ff models
    13202 
    13203 > color #2 #73fdffff models
    13204 
    13205 > color #2 #fffc79ff models
    13206 
    13207 > color #2 #999999ff models
    13208 
    13209 > color #2 #fffc79ff models
    13210 
    13211 > color #2 #ffffb0ff models
    13212 
    13213 > color #2 #f2ffbaff models
    13214 
    13215 > color #2 #fcffcfff models
    13216 
    13217 > color #2 #f2ffaeff models
    13218 
    13219 > color #2 #ffd8f4ff models
    13220 
    13221 > color #2 #fffccaff models
    13222 
    13223 > color #2 #f7ffcdff models
    13224 
    13225 > color #2 #fffabeff models
    13226 
    13227 > color #25 #e9ebb8ff models
    13228 
    13229 > color #25 #deeb9eff models
    13230 
    13231 > color #25 #ebf9a7ff models
    13232 
    13233 > color #25 #f3f9a6ff models
    13234 
    13235 > color #25 #f3f9aaff models
    13236 
    13237 > show #!24 models
    13238 
    13239 > select add #25
    13240 
    13241 2 models selected 
    13242 
    13243 > view matrix models #25,1,0,0,-41.912,0,1,0,34.291,0,0,1,2.5166
    13244 
    13245 > ui mousemode right "rotate selected models"
    13246 
    13247 > view matrix models
    13248 > #25,0.96426,-0.23087,-0.12999,5.6177,0.18956,0.94394,-0.27028,52.776,0.1851,0.23598,0.95397,-40.863
    13249 
    13250 > view matrix models
    13251 > #25,0.91729,-0.16267,-0.36348,31.464,0.012177,0.92379,-0.3827,89.007,0.39803,0.34662,0.84937,-65.244
    13252 
    13253 > ui mousemode right "translate selected models"
    13254 
    13255 > view matrix models
    13256 > #25,0.91729,-0.16267,-0.36348,126.12,0.012177,0.92379,-0.3827,161.5,0.39803,0.34662,0.84937,124.78
    13257 
    13258 > hide #!24 models
    13259 
    13260 > view matrix models
    13261 > #25,0.91729,-0.16267,-0.36348,7.3962,0.012177,0.92379,-0.3827,284.85,0.39803,0.34662,0.84937,98.36
    13262 
    13263 > view matrix models
    13264 > #25,0.91729,-0.16267,-0.36348,27.37,0.012177,0.92379,-0.3827,196.31,0.39803,0.34662,0.84937,88.723
    13265 
    13266 > ui mousemode right "rotate selected models"
    13267 
    13268 > view matrix models
    13269 > #25,0.65529,0.18882,-0.7314,60.216,-0.017341,0.97176,0.23534,118.01,0.75518,-0.14153,0.64006,132.33
    13270 
    13271 > view matrix models
    13272 > #25,0.95499,-0.28566,0.079919,-16.677,0.064815,0.46387,0.88353,89.693,-0.28946,-0.83858,0.46151,355.29
    13273 
    13274 > view matrix models
    13275 > #25,0.33031,-0.036013,-0.94319,149.72,0.85537,-0.41104,0.31525,174.59,-0.39904,-0.9109,-0.10497,445.86
    13276 
    13277 > view matrix models
    13278 > #25,-0.77549,-0.4415,0.45133,151.62,0.46194,-0.88406,-0.071088,322.85,0.43039,0.15336,0.88952,103.19
    13279 
    13280 > view matrix models
    13281 > #25,-0.84286,-0.41501,0.34258,169.42,0.25572,-0.86901,-0.42358,387.63,0.4735,-0.26942,0.83858,154.99
    13282 
    13283 > view matrix models
    13284 > #25,0.12351,-0.9746,-0.18682,192.09,0.73033,0.21673,-0.6478,232.12,0.67183,-0.056431,0.73855,119.49
    13285 
    13286 > view matrix models
    13287 > #25,0.010832,-0.96658,-0.25615,212.37,0.80335,0.16094,-0.57335,221.39,0.59541,-0.19957,0.77824,140.31
    13288 
    13289 > view matrix models
    13290 > #25,-0.48903,-0.59127,-0.64129,271.34,0.39209,0.50772,-0.76712,250.25,0.77917,-0.62659,-0.016461,268.1
    13291 
    13292 > view matrix models
    13293 > #25,0.021881,-0.9866,-0.16166,201.9,0.85769,0.10161,-0.50403,213.82,0.51371,-0.12763,0.84842,132.34
    13294 
    13295 > view matrix models
    13296 > #25,0.1303,-0.99144,0.0079275,169.41,0.81674,0.11186,0.56605,85.788,-0.5621,-0.067281,0.82433,249.53
    13297 
    13298 > view matrix models
    13299 > #25,0.0062707,0.97016,-0.24238,-19.761,0.46687,0.2115,0.85866,77.46,0.8843,-0.11854,-0.45161,249.09
    13300 
    13301 > view matrix models
    13302 > #25,0.41662,0.7801,0.46676,-130.51,-0.52765,-0.2106,0.82294,244.44,0.74028,-0.58914,0.32388,226.22
    13303 
    13304 > view matrix models
    13305 > #25,0.4615,0.5753,0.67531,-136.77,-0.676,0.721,-0.15225,269.86,-0.57449,-0.38625,0.72165,301.57
    13306 
    13307 > view matrix models
    13308 > #25,0.43916,0.89229,-0.10472,-76.243,-0.89059,0.44771,0.079981,298.15,0.11825,0.058135,0.99128,137.27
    13309 
    13310 > view matrix models
    13311 > #25,0.20078,0.35184,0.91427,-110.04,-0.97403,0.17138,0.14795,332.17,-0.10463,-0.92024,0.37712,354.53
    13312 
    13313 > view matrix models
    13314 > #25,-0.84154,0.1305,0.5242,81.912,-0.53283,-0.040844,-0.84523,429.66,-0.088896,-0.99061,0.10391,394.7
    13315 
    13316 > show #!24 models
    13317 
    13318 > view matrix models
    13319 > #25,-0.90431,0.37116,0.21085,98.786,-0.42686,-0.78377,-0.4511,457.89,-0.002175,-0.49794,0.86721,232.42
    13320 
    13321 > hide #!24 models
    13322 
    13323 > view matrix models
    13324 > #25,-0.95634,-0.1526,-0.24927,223.63,-0.11247,-0.59506,0.79577,246.76,-0.26976,0.78906,0.55191,147.87
    13325 
    13326 > view matrix models
    13327 > #25,-0.89731,-0.0033763,-0.44139,222.76,0.076106,-0.98618,-0.14717,387.92,-0.43479,-0.16565,0.88516,239.42
    13328 
    13329 > view matrix models
    13330 > #25,-0.87865,-0.056022,-0.47416,230.96,0.04276,-0.99833,0.038717,370.31,-0.47554,0.013744,0.87959,223.31
    13331 
    13332 > view matrix models
    13333 > #25,-0.91901,-0.029536,-0.39314,222.41,0.024052,-0.99953,0.018868,375,-0.39351,0.0078841,0.91929,209.87
    13334 
    13335 > ui mousemode right "translate selected models"
    13336 
    13337 > view matrix models
    13338 > #25,-0.91901,-0.029536,-0.39314,470.33,0.024052,-0.99953,0.018868,458.63,-0.39351,0.0078841,0.91929,197.95
    13339 
    13340 > view matrix models
    13341 > #25,-0.91901,-0.029536,-0.39314,464.34,0.024052,-0.99953,0.018868,465.68,-0.39351,0.0078841,0.91929,268.78
    13342 
    13343 > view matrix models
    13344 > #25,-0.91901,-0.029536,-0.39314,527.77,0.024052,-0.99953,0.018868,479.54,-0.39351,0.0078841,0.91929,251.92
    13345 
    13346 > view matrix models
    13347 > #25,-0.91901,-0.029536,-0.39314,593.7,0.024052,-0.99953,0.018868,474.77,-0.39351,0.0078841,0.91929,75.514
    13348 
    13349 > view matrix models
    13350 > #25,-0.91901,-0.029536,-0.39314,598.58,0.024052,-0.99953,0.018868,483.44,-0.39351,0.0078841,0.91929,137.26
    13351 
    13352 > ui mousemode right "rotate selected models"
    13353 
    13354 > view matrix models
    13355 > #25,-0.76838,-0.51111,-0.38516,638.02,-0.034123,-0.56825,0.82215,339.92,-0.63908,0.64487,0.41919,150.44
    13356 
    13357 > view matrix models
    13358 > #25,-0.99982,0.017582,-0.0068337,554.63,-0.013343,-0.40312,0.91505,306.47,0.013334,0.91498,0.40328,46.544
    13359 
    13360 > view matrix models
    13361 > #25,-0.47493,-0.79027,0.38719,543.33,0.53905,-0.60902,-0.58183,452.52,0.69561,-0.067615,0.71523,48.391
    13362 
    13363 > view matrix models
    13364 > #25,-0.19314,-0.95942,0.20546,554.01,0.76506,-0.27837,-0.58068,387.44,0.61431,0.045032,0.78778,35.225
    13365 
    13366 > ui mousemode right "translate selected models"
    13367 
    13368 > view matrix models
    13369 > #25,-0.19314,-0.95942,0.20546,220.47,0.76506,-0.27837,-0.58068,240.93,0.61431,0.045032,0.78778,244.62
    13370 
    13371 > ui mousemode right "rotate selected models"
    13372 
    13373 > view matrix models
    13374 > #25,-0.30827,-0.90601,-0.29002,287.95,0.66898,0.010287,-0.74321,237.32,0.67634,-0.42312,0.60293,316.15
    13375 
    13376 > view matrix models
    13377 > #25,-0.4948,-0.4633,-0.73521,310.89,0.59277,0.43871,-0.67539,186.5,0.63545,-0.76999,0.057559,429.11
    13378 
    13379 > view matrix models
    13380 > #25,0.65402,-0.7261,0.21223,96.193,0.1317,-0.16698,-0.97712,347.83,0.74493,0.66701,-0.013583,254.13
    13381 
    13382 > view matrix models
    13383 > #25,0.4121,-0.52999,0.74113,35.154,0.69997,0.70488,0.11486,45.605,-0.58328,0.47144,0.66146,344.46
    13384 
    13385 > view matrix models
    13386 > #25,0.90161,-0.29113,-0.31992,81.737,0.36619,0.90739,0.20626,47.904,0.23025,-0.30312,0.92472,312.66
    13387 
    13388 > view matrix models
    13389 > #25,0.88191,-0.075398,-0.46534,76.094,-0.061894,0.96006,-0.27286,148.79,0.46733,0.26944,0.84202,227.79
    13390 
    13391 > view matrix models
    13392 > #25,0.76612,-0.34609,0.54156,-2.224,0.40585,0.91389,0.0098876,66.772,-0.49835,0.21222,0.8406,343.78
    13393 
    13394 > view matrix models
    13395 > #25,0.54482,0.50226,0.67149,-94.367,-0.33773,0.86439,-0.37251,203.57,-0.76753,-0.023832,0.64057,426.88
    13396 
    13397 > view matrix models
    13398 > #25,0.64577,0.53526,0.5445,-94.099,-0.46545,0.84127,-0.27498,208.76,-0.60526,-0.075863,0.79241,396.12
    13399 
    13400 > show #!24 models
    13401 
    13402 > ui mousemode right "rotate selected models"
    13403 
    13404 > view matrix models
    13405 > #25,0.67418,0.66192,-0.32764,-5.2941,-0.71997,0.68792,-0.09167,233.27,0.16471,0.29769,0.94035,246.5
    13406 
    13407 > view matrix models
    13408 > #25,0.5916,0.74324,-0.31243,-7.538,-0.64796,0.6689,0.36431,171.4,0.47975,-0.013081,0.87731,255.74
    13409 
    13410 > view matrix models
    13411 > #25,0.7763,0.62354,-0.092497,-41.124,-0.6114,0.78051,0.13034,182.7,0.15347,-0.044628,0.98715,282.84
    13412 
    13413 > view matrix models
    13414 > #25,0.51427,0.8541,0.07768,-59.943,-0.66054,0.33669,0.67106,174.76,0.547,-0.39642,0.73732,311.05
    13415 
    13416 > view matrix models
    13417 > #25,0.76581,0.64046,0.057799,-60.417,-0.62728,0.76379,-0.15211,221.18,-0.14157,0.080233,0.98667,301.31
    13418 
    13419 > ui mousemode right "translate selected models"
    13420 
    13421 > view matrix models
    13422 > #25,0.76581,0.64046,0.057799,-226.92,-0.62728,0.76379,-0.15211,234.51,-0.14157,0.080233,0.98667,258.34
    13423 
    13424 > view matrix models
    13425 > #25,0.76581,0.64046,0.057799,-170.52,-0.62728,0.76379,-0.15211,170.2,-0.14157,0.080233,0.98667,62.307
    13426 
    13427 > ui mousemode right "rotate selected models"
    13428 
    13429 > view matrix models
    13430 > #25,0.058443,0.83177,-0.55204,-38.594,-0.88813,0.29583,0.35171,193.56,0.45585,0.46973,0.75601,-23.243
    13431 
    13432 > view matrix models
    13433 > #25,0.14464,0.67021,-0.72794,-7.4537,-0.73788,0.56321,0.37192,142.24,0.65925,0.48334,0.576,-25.715
    13434 
    13435 > view matrix models
    13436 > #25,0.14867,0.52468,-0.83822,22.99,-0.85703,0.49125,0.15548,190.85,0.49335,0.69526,0.5227,-25.715
    13437 
    13438 > view matrix models
    13439 > #25,0.20723,0.47079,-0.85756,25.183,-0.80501,0.58016,0.12397,178.25,0.55589,0.66466,0.49921,-26.24
    13440 
    13441 > view matrix models
    13442 > #25,0.20617,0.46946,-0.85855,25.582,-0.80524,0.57989,0.12372,178.34,0.55595,0.66583,0.49758,-26.186
    13443 
    13444 > ui mousemode right "translate selected models"
    13445 
    13446 > view matrix models
    13447 > #25,0.20617,0.46946,-0.85855,45.406,-0.80524,0.57989,0.12372,368.39,0.55595,0.66583,0.49758,47.974
    13448 
    13449 > view matrix models
    13450 > #25,0.20617,0.46946,-0.85855,107.16,-0.80524,0.57989,0.12372,347.44,0.55595,0.66583,0.49758,7.5907
    13451 
    13452 > view matrix models
    13453 > #25,0.20617,0.46946,-0.85855,105.66,-0.80524,0.57989,0.12372,402.82,0.55595,0.66583,0.49758,12.549
    13454 
    13455 > view matrix models
    13456 > #25,0.20617,0.46946,-0.85855,103.33,-0.80524,0.57989,0.12372,417.75,0.55595,0.66583,0.49758,5.057
    13457 
    13458 > view matrix models
    13459 > #25,0.20617,0.46946,-0.85855,117.56,-0.80524,0.57989,0.12372,396.23,0.55595,0.66583,0.49758,-6.4383
    13460 
    13461 > view matrix models
    13462 > #25,0.20617,0.46946,-0.85855,118.34,-0.80524,0.57989,0.12372,406.81,0.55595,0.66583,0.49758,-5.2511
    13463 
    13464 > view matrix models
    13465 > #25,0.20617,0.46946,-0.85855,141.83,-0.80524,0.57989,0.12372,379.88,0.55595,0.66583,0.49758,14.412
    13466 
    13467 > hide #!24 models
    13468 
    13469 > show #!22 models
    13470 
    13471 > view matrix models
    13472 > #25,0.20617,0.46946,-0.85855,106.87,-0.80524,0.57989,0.12372,394.09,0.55595,0.66583,0.49758,-16.511
    13473 
    13474 > fitmap #25 inMap #22
    13475 
    13476 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage4_postprocess.mrc
    13477 using 65799 points 
    13478 correlation = 0.8265, correlation about mean = 0.04987, overlap = 5750 
    13479 steps = 204, shift = 81.5, angle = 36.7 degrees 
    13480  
    13481 Position of emd_3720_2017_leaf.map (#25) relative to
    13482 COPI_golph_linkage4_postprocess.mrc (#22) coordinates: 
    13483 Matrix rotation and translation 
    13484 -0.88574578 -0.10173812 0.45288384 439.94615531 
    13485 0.24571279 -0.93053807 0.27152188 352.11709037 
    13486 0.39380153 0.35177871 0.84921852 134.03743636 
    13487 Axis 0.22203459 0.16345421 0.96124053 
    13488 Axis point 190.00483138 182.52401271 0.00000000 
    13489 Rotation angle (degrees) 169.58768934 
    13490 Shift along axis 284.08050099 
    13491  
    13492 
    13493 > view matrix models
    13494 > #25,0.41163,0.060752,-0.90932,179.23,-0.34128,0.93545,-0.091991,326.68,0.84504,0.3482,0.40579,-31.482
    13495 
    13496 > ui mousemode right "rotate selected models"
    13497 
    13498 > view matrix models
    13499 > #25,0.46191,-0.20129,-0.86379,199.21,-0.2006,0.92496,-0.32281,340.4,0.86395,0.32238,0.38687,-28.213
    13500 
    13501 > view matrix models
    13502 > #25,0.57997,0.041302,-0.81359,150.79,-0.50212,0.80457,-0.31709,388.09,0.64149,0.59242,0.48736,-47.649
    13503 
    13504 > hide #!22 models
    13505 
    13506 > show #!22 models
    13507 
    13508 > hide #!25 models
    13509 
    13510 > show #!25 models
    13511 
    13512 > view matrix models
    13513 > #25,0.62791,-0.011837,-0.7782,147.37,-0.51511,0.74323,-0.42694,410.36,0.58343,0.66893,0.46058,-46.93
    13514 
    13515 > ui mousemode right "translate selected models"
    13516 
    13517 > view matrix models
    13518 > #25,0.62791,-0.011837,-0.7782,149.03,-0.51511,0.74323,-0.42694,375.5,0.58343,0.66893,0.46058,-40.828
    13519 
    13520 > view matrix models
    13521 > #25,0.62791,-0.011837,-0.7782,153.93,-0.51511,0.74323,-0.42694,370.82,0.58343,0.66893,0.46058,-36.477
    13522 
    13523 > view matrix models
    13524 > #25,0.62791,-0.011837,-0.7782,166,-0.51511,0.74323,-0.42694,385.93,0.58343,0.66893,0.46058,16.622
    13525 
    13526 > fitmap #25 inMap #22
    13527 
    13528 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage4_postprocess.mrc
    13529 using 65799 points 
    13530 correlation = 0.8267, correlation about mean = 0.05035, overlap = 5750 
    13531 steps = 144, shift = 41.1, angle = 26.6 degrees 
    13532  
    13533 Position of emd_3720_2017_leaf.map (#25) relative to
    13534 COPI_golph_linkage4_postprocess.mrc (#22) coordinates: 
    13535 Matrix rotation and translation 
    13536 -0.88557913 -0.10013770 0.45356593 439.65237921 
    13537 0.24461362 -0.93064817 0.27213628 352.23089454 
    13538 0.39485921 0.35194662 0.84865764 133.94323367 
    13539 Axis 0.22249542 0.16366274 0.96109848 
    13540 Axis point 189.94292506 182.41568594 0.00000000 
    13541 Rotation angle (degrees) 169.66793830 
    13542 Shift along axis 284.20035559 
    13543  
    13544 
    13545 > view matrix models
    13546 > #25,0.4111,0.059423,-0.90965,177.79,-0.34005,0.93584,-0.092545,262.62,0.84579,0.34737,0.40493,5.601
    13547 
    13548 > view matrix models
    13549 > #25,0.4111,0.059423,-0.90965,178.44,-0.34005,0.93584,-0.092545,284.58,0.84579,0.34737,0.40493,9.3357
    13550 
    13551 > view matrix models
    13552 > #25,0.4111,0.059423,-0.90965,175.29,-0.34005,0.93584,-0.092545,289.9,0.84579,0.34737,0.40493,4.0216
    13553 
    13554 > view matrix models
    13555 > #25,0.4111,0.059423,-0.90965,20.079,-0.34005,0.93584,-0.092545,43.072,0.84579,0.34737,0.40493,-77.647
    13556 
    13557 > hide #!22 models
    13558 
    13559 > show #!22 models
    13560 
    13561 > view matrix models
    13562 > #25,0.4111,0.059423,-0.90965,316.66,-0.34005,0.93584,-0.092545,-42.739,0.84579,0.34737,0.40493,215.63
    13563 
    13564 > ui mousemode right "rotate selected models"
    13565 
    13566 > view matrix models
    13567 > #25,0.68725,-0.081414,-0.72185,279.22,-0.55997,0.57362,-0.59783,87.337,0.46273,0.81507,0.34863,210.01
    13568 
    13569 > view matrix models
    13570 > #25,0.65499,-0.071784,-0.75222,285.44,-0.60503,0.54655,-0.57898,93.337,0.45269,0.83435,0.31455,213.03
    13571 
    13572 > view matrix models
    13573 > #25,-0.25359,-0.95698,0.14101,383.84,0.54222,-0.019905,0.84,-142.89,-0.80106,0.28947,0.52394,393.8
    13574 
    13575 > view matrix models
    13576 > #25,0.10223,-0.9479,0.30171,322.86,0.79835,0.25912,0.5436,-168.67,-0.59346,0.1853,0.78325,350.94
    13577 
    13578 > view matrix models
    13579 > #25,0.54789,-0.78857,0.27923,256.32,0.80996,0.58354,0.058703,-149.11,-0.20923,0.194,0.95843,285.02
    13580 
    13581 > view matrix models
    13582 > #25,0.65616,-0.56688,-0.4981,313.14,0.74969,0.41436,0.51601,-178.3,-0.086123,-0.71201,0.69687,411.29
    13583 
    13584 > view matrix models
    13585 > #25,0.29889,-0.25568,-0.9194,368.09,0.91319,0.35632,0.19778,-150.75,0.27703,-0.8987,0.33998,436.39
    13586 
    13587 > view matrix models
    13588 > #25,0.17207,-0.32966,-0.92829,392.32,0.97418,0.19675,0.11071,-127.91,0.14614,-0.92337,0.355,452.26
    13589 
    13590 > view matrix models
    13591 > #25,0.31825,-0.24155,-0.91672,363.89,0.89993,0.38101,0.21203,-153.95,0.29806,-0.89246,0.33863,433.44
    13592 
    13593 > ui mousemode right "translate selected models"
    13594 
    13595 > view matrix models
    13596 > #25,0.31825,-0.24155,-0.91672,230.47,0.89993,0.38101,0.21203,185.62,0.29806,-0.89246,0.33863,222.8
    13597 
    13598 > view matrix models
    13599 > #25,0.31825,-0.24155,-0.91672,230.82,0.89993,0.38101,0.21203,189.52,0.29806,-0.89246,0.33863,231.16
    13600 
    13601 > fitmap #25 inMap #22
    13602 
    13603 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage4_postprocess.mrc
    13604 using 65799 points 
    13605 correlation = 0.9378, correlation about mean = 0.08362, overlap = 8320 
    13606 steps = 68, shift = 3.58, angle = 3.59 degrees 
    13607  
    13608 Position of emd_3720_2017_leaf.map (#25) relative to
    13609 COPI_golph_linkage4_postprocess.mrc (#22) coordinates: 
    13610 Matrix rotation and translation 
    13611 -0.30044297 0.76040022 0.57578255 266.90286957 
    13612 -0.93094345 -0.36514623 -0.00353977 420.26956071 
    13613 0.20755318 -0.53708449 0.81759522 283.85937535 
    13614 Axis -0.29456010 0.20329257 -0.93375933 
    13615 Axis point 249.68421694 176.04374912 0.00000000 
    13616 Rotation angle (degrees) 115.08719265 
    13617 Shift along axis -258.23759378 
    13618  
    13619 
    13620 > select subtract #25
    13621 
    13622 Nothing selected 
    13623 
    13624 > select add #25
    13625 
    13626 2 models selected 
    13627 
    13628 > select subtract #25
    13629 
    13630 Nothing selected 
    13631 
    13632 > select add #25
    13633 
    13634 2 models selected 
    13635 
    13636 > select subtract #25
    13637 
    13638 Nothing selected 
    13639 
    13640 > select add #25
    13641 
    13642 2 models selected 
    13643 
    13644 > select subtract #25
    13645 
    13646 Nothing selected 
    13647 
    13648 > hide #!25 models
    13649 
    13650 > show #!25 models
    13651 
    13652 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    13653 > resources/Processing/References/emd_3720_2017_leaf.map"
    13654 
    13655 Opened emd_3720_2017_leaf.map as #26, grid size 128,128,128, pixel 1.78, shown
    13656 at level 0.226, step 1, values float32 
    13657 
    13658 > volume #26 level 0.1148
    13659 
    13660 > select add #26
    13661 
    13662 2 models selected 
    13663 
    13664 > view matrix models #26,1,0,0,96.524,0,1,0,-184.96,0,0,1,89.501
    13665 
    13666 > ui mousemode right "rotate selected models"
    13667 
    13668 > view matrix models
    13669 > #26,-0.13949,-0.21888,0.96573,137.67,-0.988,0.096085,-0.12093,49.163,-0.066322,-0.97101,-0.22966,358.18
    13670 
    13671 > view matrix models
    13672 > #26,0.094026,-0.16046,0.98255,102.27,-0.83889,-0.54424,-0.0086031,95.53,0.53612,-0.82344,-0.18578,267.17
    13673 
    13674 > view matrix models
    13675 > #26,0.5468,0.51282,-0.66183,164.68,-0.33482,0.85845,0.38854,-176.01,0.7674,0.0091376,0.6411,43.903
    13676 
    13677 > view matrix models
    13678 > #26,0.24967,0.4646,-0.84959,226.24,-0.32688,0.86631,0.37769,-176.57,0.91149,0.18342,0.36816,38.987
    13679 
    13680 > view matrix models
    13681 > #26,0.40334,0.60908,-0.68289,171.9,-0.36513,0.79143,0.49023,-176.57,0.83904,0.051609,0.54161,42.463
    13682 
    13683 > view matrix models
    13684 > #26,0.95778,-0.020064,-0.28681,137.56,-0.047641,0.9727,-0.22714,-149.49,0.28353,0.23122,0.93067,37.962
    13685 
    13686 > view matrix models
    13687 > #26,0.1681,-0.2563,-0.95187,333.68,-0.078132,0.95911,-0.27204,-139.11,0.98267,0.1201,0.1412,65.286
    13688 
    13689 > view matrix models
    13690 > #26,0.1449,-0.40682,-0.90194,348.4,0.35155,0.87325,-0.3374,-169.78,0.92489,-0.26819,0.26955,103.07
    13691 
    13692 > view matrix models
    13693 > #26,-0.056096,-0.592,-0.80398,381.72,0.91057,0.29996,-0.28441,-170.82,0.40954,-0.74804,0.52223,188.92
    13694 
    13695 > view matrix models
    13696 > #26,-0.39145,-0.53188,-0.75091,406.23,0.79975,-0.60028,0.008276,-85.265,-0.45516,-0.5973,0.66035,252.49
    13697 
    13698 > view matrix models
    13699 > #26,-0.25922,-0.59649,-0.75961,400.01,0.9591,-0.25156,-0.12977,-128.68,-0.11368,-0.76218,0.63731,236.25
    13700 
    13701 > view matrix models
    13702 > #26,0.44596,-0.32102,-0.8355,296.23,0.84165,-0.1672,0.51349,-201.39,-0.30454,-0.9322,0.19562,330.31
    13703 
    13704 > view matrix models
    13705 > #26,0.33725,-0.27315,-0.90092,310.53,0.73746,-0.51819,0.43317,-138.18,-0.58516,-0.81048,0.026681,367.48
    13706 
    13707 > view matrix models
    13708 > #26,-0.2791,-0.21998,-0.93472,377.95,0.87927,-0.44982,-0.15668,-92.772,-0.38599,-0.86561,0.31897,317.01
    13709 
    13710 > view matrix models
    13711 > #26,-0.28495,-0.21552,-0.934,377.99,0.8701,-0.46696,-0.1577,-89.566,-0.40215,-0.85761,0.32059,317.7
    13712 
    13713 > ui mousemode right "translate selected models"
    13714 
    13715 > view matrix models
    13716 > #26,-0.28495,-0.21552,-0.934,380.88,0.8701,-0.46696,-0.1577,251.66,-0.40215,-0.85761,0.32059,386.05
    13717 
    13718 > view matrix models
    13719 > #26,-0.28495,-0.21552,-0.934,480.26,0.8701,-0.46696,-0.1577,-37.198,-0.40215,-0.85761,0.32059,507.75
    13720 
    13721 > hide #!22 models
    13722 
    13723 > show #!24 models
    13724 
    13725 > color #24 #e2cefcff models
    13726 
    13727 > color #24 #e7d8fcff models
    13728 
    13729 > color #24 #e7d8fcc7 models
    13730 
    13731 > color #26 #eaeab5ff models
    13732 
    13733 > view matrix models
    13734 > #26,-0.28495,-0.21552,-0.934,388,0.8701,-0.46696,-0.1577,-4.1271,-0.40215,-0.85761,0.32059,407.06
    13735 
    13736 > view matrix models
    13737 > #26,-0.28495,-0.21552,-0.934,462.9,0.8701,-0.46696,-0.1577,-9.4884,-0.40215,-0.85761,0.32059,495.83
    13738 
    13739 > view matrix models
    13740 > #26,-0.28495,-0.21552,-0.934,320.61,0.8701,-0.46696,-0.1577,155.28,-0.40215,-0.85761,0.32059,477.73
    13741 
    13742 > view matrix models
    13743 > #26,-0.28495,-0.21552,-0.934,322.5,0.8701,-0.46696,-0.1577,214.78,-0.40215,-0.85761,0.32059,441.07
    13744 
    13745 > ui mousemode right "rotate selected models"
    13746 
    13747 > view matrix models
    13748 > #26,-0.57986,-0.30806,-0.75423,345.72,0.3439,-0.93179,0.11618,297.56,-0.73858,-0.19201,0.64625,361.19
    13749 
    13750 > view matrix models
    13751 > #26,-0.75763,-0.18356,-0.62634,335.87,0.32369,-0.93898,-0.11636,328.15,-0.56676,-0.2909,0.77082,338.85
    13752 
    13753 > ui mousemode right "translate selected models"
    13754 
    13755 > view matrix models
    13756 > #26,-0.75763,-0.18356,-0.62634,349.47,0.32369,-0.93898,-0.11636,391.07,-0.56676,-0.2909,0.77082,345.79
    13757 
    13758 > view matrix models
    13759 > #26,-0.75763,-0.18356,-0.62634,358.5,0.32369,-0.93898,-0.11636,366.64,-0.56676,-0.2909,0.77082,306.11
    13760 
    13761 > ui mousemode right "rotate selected models"
    13762 
    13763 > view matrix models
    13764 > #26,-0.62073,-0.6716,-0.40454,375.13,0.23861,-0.65332,0.7185,243.59,-0.74684,0.34947,0.56578,274.18
    13765 
    13766 > view matrix models
    13767 > #26,-0.52014,-0.37907,-0.76535,371.38,0.27944,-0.92232,0.26691,324.42,-0.80707,-0.075042,0.58567,329.37
    13768 
    13769 > hide #!25 models
    13770 
    13771 > hide #!2 models
    13772 
    13773 > view matrix models
    13774 > #26,-0.47579,0.24569,-0.84455,301.06,0.24709,-0.88419,-0.39642,401.83,-0.84414,-0.39729,0.35998,398.71
    13775 
    13776 > view matrix models
    13777 > #26,-0.52333,0.18217,-0.83243,312.6,0.24078,-0.90546,-0.34952,399.55,-0.81741,-0.38334,0.42999,385.76
    13778 
    13779 > ui mousemode right "translate selected models"
    13780 
    13781 > view matrix models
    13782 > #26,-0.52333,0.18217,-0.83243,322.46,0.24078,-0.90546,-0.34952,382.47,-0.81741,-0.38334,0.42999,399.23
    13783 
    13784 > ui mousemode right "rotate selected models"
    13785 
    13786 > view matrix models
    13787 > #26,-0.7351,0.33096,-0.59168,300.24,0.26758,-0.66025,-0.70176,391.72,-0.62292,-0.67419,0.3968,415.88
    13788 
    13789 > view matrix models
    13790 > #26,-0.35108,0.6519,-0.67214,227.92,0.22599,-0.63762,-0.73646,397.82,-0.90867,-0.41045,0.076532,454.52
    13791 
    13792 > view matrix models
    13793 > #26,-0.87619,0.10208,-0.47103,329.31,0.3082,-0.63271,-0.71042,384.85,-0.37054,-0.76763,0.52291,383.59
    13794 
    13795 > view matrix models
    13796 > #26,-0.63742,-0.76569,0.086096,340.2,0.69136,-0.61769,-0.37481,300.06,0.34017,-0.17939,0.9231,185.61
    13797 
    13798 > view matrix models
    13799 > #26,0.36742,-0.92496,-0.097251,267.12,0.48645,0.10199,0.86774,90.596,-0.7927,-0.36613,0.48742,387.6
    13800 
    13801 > view matrix models
    13802 > #26,-0.035903,-0.94768,-0.31719,341.46,0.85844,-0.19175,0.47573,129.86,-0.51166,-0.25521,0.82041,303.22
    13803 
    13804 > view matrix models
    13805 > #26,0.49042,-0.85306,-0.17826,254.17,0.41024,0.045507,0.91084,100.88,-0.76889,-0.51982,0.37228,416.86
    13806 
    13807 > view matrix models
    13808 > #26,0.69954,-0.66305,-0.26647,218.21,0.67611,0.4934,0.5472,60.197,-0.23135,-0.56295,0.79345,311.44
    13809 
    13810 > view matrix models
    13811 > #26,0.56193,-0.50217,-0.65731,260.7,0.81701,0.46121,0.3461,71.832,0.12935,-0.73151,0.66945,305.39
    13812 
    13813 > view matrix models
    13814 > #26,0.53207,-0.83781,0.12241,212.14,0.84506,0.53446,-0.015123,102.55,-0.052755,0.11149,0.99236,187.16
    13815 
    13816 > view matrix models
    13817 > #26,0.93919,-0.3008,-0.16563,135.89,0.33731,0.71785,0.60902,64.435,-0.0643,-0.62786,0.77567,302.39
    13818 
    13819 > view matrix models
    13820 > #26,0.43866,-0.58484,-0.68231,287.48,0.58417,0.76252,-0.27803,135.86,0.68288,-0.27662,0.67613,187.59
    13821 
    13822 > view matrix models
    13823 > #26,0.91234,-0.39758,-0.097779,142.49,0.31358,0.83209,-0.45748,179.37,0.26325,0.38672,0.88383,131.32
    13824 
    13825 > view matrix models
    13826 > #26,0.63945,0.02757,-0.76833,201.74,0.15525,0.97414,0.16416,106.94,0.75299,-0.22425,0.61864,180.18
    13827 
    13828 > view matrix models
    13829 > #26,0.99662,0.019371,-0.079834,81.009,-0.03519,0.97879,-0.20181,171.14,0.074231,0.20394,0.97617,163.65
    13830 
    13831 > view matrix models
    13832 > #26,0.86423,-0.01501,-0.50287,150.04,-0.041301,0.99406,-0.10065,158.07,0.50139,0.10776,0.85848,140.68
    13833 
    13834 > view matrix models
    13835 > #26,0.84915,-0.015085,-0.52794,154.72,-0.04001,0.99488,-0.09278,156.89,0.52664,0.099907,0.8442,140.45
    13836 
    13837 > ui mousemode right "translate selected models"
    13838 
    13839 > view matrix models
    13840 > #26,0.84915,-0.015085,-0.52794,138.01,-0.04001,0.99488,-0.09278,176.54,0.52664,0.099907,0.8442,119.16
    13841 
    13842 > view matrix models
    13843 > #26,0.84915,-0.015085,-0.52794,143.94,-0.04001,0.99488,-0.09278,167.3,0.52664,0.099907,0.8442,127.09
    13844 
    13845 > fitmap #26 inMap #22
    13846 
    13847 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage4_postprocess.mrc
    13848 using 93502 points 
    13849 correlation = 0.7498, correlation about mean = 0.04308, overlap = 5998 
    13850 steps = 120, shift = 44.7, angle = 10.8 degrees 
    13851  
    13852 Position of emd_3720_2017_leaf.map (#26) relative to
    13853 COPI_golph_linkage4_postprocess.mrc (#22) coordinates: 
    13854 Matrix rotation and translation 
    13855 -0.99752873 0.05994955 0.03663985 346.15620260 
    13856 -0.05632233 -0.99406404 0.09308312 452.37718258 
    13857 0.04200265 0.09078945 0.99498394 220.70010831 
    13858 Axis -0.01970204 -0.04606500 -0.99874413 
    13859 Axis point 177.33157534 216.12223197 0.00000000 
    13860 Rotation angle (degrees) 176.66298139 
    13861 Shift along axis -248.08167899 
    13862  
    13863 
    13864 > view matrix models
    13865 > #26,0.76733,0.10072,-0.6333,168.13,-0.10499,0.99399,0.030875,167.58,0.6326,0.0428,0.77329,98.713
    13866 
    13867 > view matrix models
    13868 > #26,0.76733,0.10072,-0.6333,157.02,-0.10499,0.99399,0.030875,159.86,0.6326,0.0428,0.77329,112.62
    13869 
    13870 > ui mousemode right "rotate selected models"
    13871 
    13872 > view matrix models
    13873 > #26,0.76486,0.29299,-0.57371,127.29,-0.12989,0.94244,0.30812,136.11,0.63096,-0.16115,0.75889,138.88
    13874 
    13875 > view matrix models
    13876 > #26,0.98138,-0.11947,0.15038,66.585,0.1547,0.95574,-0.25027,168.22,-0.11382,0.26887,0.95643,148.49
    13877 
    13878 > view matrix models
    13879 > #26,0.73144,-0.67654,-0.085371,189.27,0.47774,0.59774,-0.6438,220.88,0.48659,0.43011,0.76042,84.395
    13880 
    13881 > view matrix models
    13882 > #26,0.75471,-0.35463,-0.55195,203.25,0.26169,0.93421,-0.24241,157.75,0.6016,0.038507,0.79787,113.74
    13883 
    13884 > hide #!24 models
    13885 
    13886 > show #!24 models
    13887 
    13888 > view matrix models
    13889 > #26,0.75259,-0.35974,-0.55153,204.05,0.26218,0.93203,-0.25017,158.88,0.60404,0.043677,0.79575,113.1
    13890 
    13891 > hide #!26 models
    13892 
    13893 > show #!26 models
    13894 
    13895 > hide #!26 models
    13896 
    13897 > show #!2 models
    13898 
    13899 > show #!26 models
    13900 
    13901 > hide #!24 models
    13902 
    13903 > show #!24 models
    13904 
    13905 > hide #!24 models
    13906 
    13907 > show #!24 models
    13908 
    13909 > hide #!2 models
    13910 
    13911 > show #!2 models
    13912 
    13913 > hide #!2 models
    13914 
    13915 > hide #!24 models
    13916 
    13917 > show #!24 models
    13918 
    13919 > show #!2 models
    13920 
    13921 > view matrix models
    13922 > #26,0.41557,-0.18056,-0.89146,260.92,-0.0038894,0.97974,-0.20025,177.4,0.90955,0.086688,0.40645,119.33
    13923 
    13924 > view matrix models
    13925 > #26,0.99774,0.058716,-0.032707,65.055,-0.060258,0.56591,-0.82226,306.65,-0.029771,0.82237,0.56817,118.67
    13926 
    13927 > view matrix models
    13928 > #26,0.67073,0.19286,-0.71619,166.73,-0.2059,0.97607,0.07001,168.81,0.71255,0.1005,0.69439,105.99
    13929 
    13930 > view matrix models
    13931 > #26,-0.43931,-0.65376,-0.61612,381.73,-0.73161,-0.13763,0.66769,290.83,-0.5213,0.74408,-0.41784,300.06
    13932 
    13933 > view matrix models
    13934 > #26,-0.54478,0.76628,-0.34062,191.48,-0.51896,-0.62714,-0.58085,472.63,-0.65871,-0.13966,0.73932,284.61
    13935 
    13936 > view matrix models
    13937 > #26,-0.46118,0.71836,-0.52084,209.02,-0.51955,-0.69446,-0.49778,470.94,-0.71929,0.041039,0.6935,275.29
    13938 
    13939 > ui mousemode right "translate selected models"
    13940 
    13941 > view matrix models
    13942 > #26,-0.46118,0.71836,-0.52084,142.24,-0.51955,-0.69446,-0.49778,338.77,-0.71929,0.041039,0.6935,155.72
    13943 
    13944 > show #!25 models
    13945 
    13946 > view matrix models
    13947 > #26,-0.46118,0.71836,-0.52084,237.16,-0.51955,-0.69446,-0.49778,363.17,-0.71929,0.041039,0.6935,222.26
    13948 
    13949 > view matrix models
    13950 > #26,-0.46118,0.71836,-0.52084,83.898,-0.51955,-0.69446,-0.49778,398.51,-0.71929,0.041039,0.6935,108.18
    13951 
    13952 > view matrix models
    13953 > #26,-0.46118,0.71836,-0.52084,154.78,-0.51955,-0.69446,-0.49778,295.45,-0.71929,0.041039,0.6935,113.59
    13954 
    13955 > view matrix models
    13956 > #26,-0.46118,0.71836,-0.52084,126.47,-0.51955,-0.69446,-0.49778,307.49,-0.71929,0.041039,0.6935,105.68
    13957 
    13958 > view matrix models
    13959 > #26,-0.46118,0.71836,-0.52084,124.21,-0.51955,-0.69446,-0.49778,308.74,-0.71929,0.041039,0.6935,105.23
    13960 
    13961 > ui mousemode right "rotate selected models"
    13962 
    13963 > view matrix models
    13964 > #26,-0.38554,0.80657,-0.4481,96.523,-0.60555,-0.58761,-0.53668,310.3,-0.69618,0.064439,0.71497,97.281
    13965 
    13966 > view matrix models
    13967 > #26,-0.37906,0.92056,0.094306,18.142,-0.58365,-0.15875,-0.79634,287.23,-0.7181,-0.3569,0.59745,163.98
    13968 
    13969 > view matrix models
    13970 > #26,-0.55593,0.66189,-0.50283,139.56,-0.68414,-0.70793,-0.17548,290.93,-0.47212,0.24645,0.84638,34.657
    13971 
    13972 > view matrix models
    13973 > #26,-0.7847,-0.055307,-0.61741,264.67,-0.5058,-0.51866,0.68931,146.05,-0.35835,0.85319,0.37902,4.4531
    13974 
    13975 > view matrix models
    13976 > #26,0.19358,0.91096,0.36426,-77.402,-0.98106,0.17702,0.078668,188.81,0.0071824,-0.37259,0.92797,44.731
    13977 
    13978 > view matrix models
    13979 > #26,0.401,0.64535,0.65017,-102.9,-0.58738,0.72577,-0.35811,130.24,-0.70298,-0.23829,0.6701,139.52
    13980 
    13981 > view matrix models
    13982 > #26,0.32629,0.93814,-0.11586,-38.999,-0.88387,0.25935,-0.38925,223.21,-0.33513,0.22941,0.91382,13.224
    13983 
    13984 > view matrix models
    13985 > #26,-0.10398,0.8308,-0.54677,73.401,-0.99041,-0.036189,0.13335,208.89,0.091004,0.55539,0.82659,-63.668
    13986 
    13987 > view matrix models
    13988 > #26,0.43436,0.25503,-0.86388,118.69,-0.713,0.68342,-0.15674,125.75,0.55042,0.68403,0.47869,-89.976
    13989 
    13990 > view matrix models
    13991 > #26,0.87334,0.083429,-0.47992,44.172,-0.42329,0.61753,-0.66294,160.58,0.24105,0.78211,0.57462,-77.999
    13992 
    13993 > view matrix models
    13994 > #26,0.90567,0.32089,-0.27712,-11.798,-0.40491,0.84845,-0.34084,92.884,0.12576,0.4209,0.89835,-60.003
    13995 
    13996 > ui mousemode right "translate selected models"
    13997 
    13998 > view matrix models
    13999 > #26,0.90567,0.32089,-0.27712,92.66,-0.40491,0.84845,-0.34084,238.75,0.12576,0.4209,0.89835,85.291
    14000 
    14001 > view matrix models
    14002 > #26,0.90567,0.32089,-0.27712,74.635,-0.40491,0.84845,-0.34084,239.88,0.12576,0.4209,0.89835,93.592
    14003 
    14004 > view matrix models
    14005 > #26,0.90567,0.32089,-0.27712,84.593,-0.40491,0.84845,-0.34084,207.82,0.12576,0.4209,0.89835,85.417
    14006 
    14007 > view matrix models
    14008 > #26,0.90567,0.32089,-0.27712,59.959,-0.40491,0.84845,-0.34084,218.88,0.12576,0.4209,0.89835,113.58
    14009 
    14010 > view matrix models
    14011 > #26,0.90567,0.32089,-0.27712,55.258,-0.40491,0.84845,-0.34084,196.72,0.12576,0.4209,0.89835,113.74
    14012 
    14013 > view matrix models
    14014 > #26,0.90567,0.32089,-0.27712,50.73,-0.40491,0.84845,-0.34084,201.11,0.12576,0.4209,0.89835,123.93
    14015 
    14016 > ui mousemode right "rotate selected models"
    14017 
    14018 > view matrix models
    14019 > #26,0.29654,0.53167,-0.79334,155.44,-0.70136,0.68506,0.19695,190.71,0.64819,0.49802,0.57604,93.624
    14020 
    14021 > view matrix models
    14022 > #26,0.15048,0.56432,-0.81173,170.24,-0.69067,0.64748,0.3221,179.22,0.70734,0.51216,0.48719,95.726
    14023 
    14024 > ui mousemode right "translate selected models"
    14025 
    14026 > view matrix models
    14027 > #26,0.15048,0.56432,-0.81173,176.11,-0.69067,0.64748,0.3221,266.02,0.70734,0.51216,0.48719,78.265
    14028 
    14029 > view matrix models
    14030 > #26,0.15048,0.56432,-0.81173,15.001,-0.69067,0.64748,0.3221,32.363,0.70734,0.51216,0.48719,-105.62
    14031 
    14032 > view matrix models
    14033 > #26,0.15048,0.56432,-0.81173,68.34,-0.69067,0.64748,0.3221,34.256,0.70734,0.51216,0.48719,-43.798
    14034 
    14035 > view matrix models
    14036 > #26,0.15048,0.56432,-0.81173,222.36,-0.69067,0.64748,0.3221,245.86,0.70734,0.51216,0.48719,53.586
    14037 
    14038 > fitmap #26 inMap #22
    14039 
    14040 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage4_postprocess.mrc
    14041 using 93502 points 
    14042 correlation = 0.877, correlation about mean = 0.1072, overlap = 7580 
    14043 steps = 144, shift = 67.3, angle = 23.8 degrees 
    14044  
    14045 Position of emd_3720_2017_leaf.map (#26) relative to
    14046 COPI_golph_linkage4_postprocess.mrc (#22) coordinates: 
    14047 Matrix rotation and translation 
    14048 -0.88225376 -0.44406300 0.15632130 356.95023437 
    14049 0.45852205 -0.88579944 0.07153241 358.90152443 
    14050 0.10670443 0.13478650 0.98511256 161.26481449 
    14051 Axis 0.06980469 0.05475520 0.99605681 
    14052 Axis point 131.01986728 216.21673342 0.00000000 
    14053 Rotation angle (degrees) 153.05859172 
    14054 Shift along axis 205.19744356 
    14055  
    14056 
    14057 > view matrix models
    14058 > #26,0.53487,0.44736,-0.71679,195.09,-0.58257,0.80971,0.070631,247.8,0.61198,0.3798,0.69371,41.474
    14059 
    14060 > ui mousemode right "rotate selected models"
    14061 
    14062 > view matrix models
    14063 > #26,0.33353,0.59398,-0.73209,202.17,-0.64664,0.70922,0.28083,242.24,0.68602,0.37973,0.62063,41.728
    14064 
    14065 > hide #!26 models
    14066 
    14067 > show #!26 models
    14068 
    14069 > hide #!25 models
    14070 
    14071 > show #!25 models
    14072 
    14073 > view matrix models
    14074 > #26,0.56048,0.7964,-0.22716,92.688,-0.62523,0.58679,0.51455,226.86,0.54308,-0.14637,0.82682,96.428
    14075 
    14076 > view matrix models
    14077 > #26,0.58459,0.77181,-0.25011,95.606,-0.62987,0.62605,0.45971,229.17,0.51139,-0.1112,0.85212,92.828
    14078 
    14079 > ui mousemode right "translate selected models"
    14080 
    14081 > view matrix models
    14082 > #26,0.58459,0.77181,-0.25011,-111.93,-0.62987,0.62605,0.45971,22.697,0.51139,-0.1112,0.85212,-45.366
    14083 
    14084 > view matrix models
    14085 > #26,0.58459,0.77181,-0.25011,-97.192,-0.62987,0.62605,0.45971,54.683,0.51139,-0.1112,0.85212,-33.781
    14086 
    14087 > view matrix models
    14088 > #26,0.58459,0.77181,-0.25011,-102.44,-0.62987,0.62605,0.45971,99.852,0.51139,-0.1112,0.85212,-39.495
    14089 
    14090 > view matrix models
    14091 > #26,0.58459,0.77181,-0.25011,-107.59,-0.62987,0.62605,0.45971,111.38,0.51139,-0.1112,0.85212,-44.174
    14092 
    14093 > view matrix models
    14094 > #26,0.58459,0.77181,-0.25011,-109.08,-0.62987,0.62605,0.45971,115.45,0.51139,-0.1112,0.85212,-41.523
    14095 
    14096 > view matrix models
    14097 > #26,0.58459,0.77181,-0.25011,-89.696,-0.62987,0.62605,0.45971,95.493,0.51139,-0.1112,0.85212,-49.625
    14098 
    14099 > view matrix models
    14100 > #26,0.58459,0.77181,-0.25011,-82.584,-0.62987,0.62605,0.45971,61.158,0.51139,-0.1112,0.85212,-74.18
    14101 
    14102 > view matrix models
    14103 > #26,0.58459,0.77181,-0.25011,-95.828,-0.62987,0.62605,0.45971,107.52,0.51139,-0.1112,0.85212,-42.496
    14104 
    14105 > ui mousemode right "rotate selected models"
    14106 
    14107 > view matrix models
    14108 > #26,0.25756,0.86769,-0.42519,-49.595,0.57601,0.21543,0.78854,-18.743,0.7758,-0.44801,-0.44432,120.85
    14109 
    14110 > view matrix models
    14111 > #26,0.75076,-0.42093,-0.5091,58.444,0.26374,0.8976,-0.35322,69.88,0.60564,0.13091,0.78489,-74.158
    14112 
    14113 > view matrix models
    14114 > #26,0.40853,0.33683,-0.84832,46.691,0.046773,0.92047,0.388,4.211,0.91155,-0.19819,0.36028,-19.343
    14115 
    14116 > view matrix models
    14117 > #26,0.01264,0.0016047,-0.99992,149.45,-0.4635,0.88608,-0.0044373,112.41,0.886,0.46352,0.011944,-54.394
    14118 
    14119 > view matrix models
    14120 > #26,0.34103,0.24805,-0.90674,71.834,-0.017243,0.96605,0.25779,21.383,0.93989,-0.07228,0.33373,-34.461
    14121 
    14122 > view matrix models
    14123 > #26,-0.011437,-0.33687,-0.94148,185.72,-0.82667,0.53291,-0.18063,216.52,0.56257,0.77623,-0.28457,-20.141
    14124 
    14125 > view matrix models
    14126 > #26,0.9393,0.3009,-0.16485,-89.781,-0.2782,0.38675,-0.87922,254.36,-0.2008,0.87171,0.44699,-31.49
    14127 
    14128 > view matrix models
    14129 > #26,0.67367,0.71528,0.18586,-150.62,-0.72541,0.68806,-0.018625,167.39,-0.14121,-0.12228,0.9824,17.325
    14130 
    14131 > view matrix models
    14132 > #26,-0.21604,0.9618,0.16814,-77.266,-0.65223,-0.014014,-0.75789,330.26,-0.72658,-0.2734,0.63035,143.21
    14133 
    14134 > view matrix models
    14135 > #26,-0.50268,0.85836,0.10262,-24.725,-0.81347,-0.4295,-0.39217,354.98,-0.29254,-0.28061,0.91415,61.432
    14136 
    14137 > view matrix models
    14138 > #26,-0.68495,0.72817,-0.024797,26.505,-0.72314,-0.68359,-0.09887,340.5,-0.088945,-0.049789,0.99479,1.2852
    14139 
    14140 > ui mousemode right "translate selected models"
    14141 
    14142 > view matrix models
    14143 > #26,-0.68495,0.72817,-0.024797,226.05,-0.72314,-0.68359,-0.09887,458.07,-0.088945,-0.049789,0.99479,194.14
    14144 
    14145 > view matrix models
    14146 > #26,-0.68495,0.72817,-0.024797,214.85,-0.72314,-0.68359,-0.09887,456.73,-0.088945,-0.049789,0.99479,191.67
    14147 
    14148 > view matrix models
    14149 > #26,-0.68495,0.72817,-0.024797,219.41,-0.72314,-0.68359,-0.09887,443.07,-0.088945,-0.049789,0.99479,190.09
    14150 
    14151 > fitmap #26 inMap #22
    14152 
    14153 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage4_postprocess.mrc
    14154 using 93502 points 
    14155 correlation = 0.8691, correlation about mean = -0.03408, overlap = 7035 
    14156 steps = 168, shift = 71.3, angle = 28.9 degrees 
    14157  
    14158 Position of emd_3720_2017_leaf.map (#26) relative to
    14159 COPI_golph_linkage4_postprocess.mrc (#22) coordinates: 
    14160 Matrix rotation and translation 
    14161 0.67126351 -0.61872807 -0.40814319 246.12148248 
    14162 0.72190094 0.42083648 0.54932293 164.03711823 
    14163 -0.16811997 -0.66337939 0.72915255 303.22204906 
    14164 Axis -0.66500184 -0.13162000 0.73515218 
    14165 Axis point 82.38815567 394.48105210 0.00000000 
    14166 Rotation angle (degrees) 65.75581751 
    14167 Shift along axis 37.65254755 
    14168  
    14169 
    14170 > view matrix models
    14171 > #26,-0.57238,0.78964,-0.221,59.226,-0.61549,-0.59182,-0.5205,262.25,-0.5418,-0.1619,0.82477,60.766
    14172 
    14173 > ui mousemode right "rotate selected models"
    14174 
    14175 > view matrix models
    14176 > #26,-0.88426,0.42008,-0.20402,136.68,-0.18135,-0.71147,-0.67891,246.1,-0.43035,-0.56333,0.70531,110.22
    14177 
    14178 > view matrix models
    14179 > #26,-0.91128,0.35438,-0.20971,148.26,-0.114,-0.70649,-0.69848,240.19,-0.39568,-0.61261,0.68421,114.67
    14180 
    14181 > view matrix models
    14182 > #26,-0.80102,-0.435,-0.41127,253.89,0.54473,-0.24474,-0.80211,122.69,0.24826,-0.86653,0.433,101.77
    14183 
    14184 > view matrix models
    14185 > #26,-0.95892,0.1552,-0.23745,180.73,0.07831,-0.6597,-0.74744,218.61,-0.27265,-0.73533,0.62044,122.93
    14186 
    14187 > view matrix models
    14188 > #26,-0.81813,-0.23357,-0.52546,245.24,0.38933,-0.89748,-0.20725,148.05,-0.42318,-0.37413,0.82519,72.646
    14189 
    14190 > view matrix models
    14191 > #26,-0.24551,-0.55843,-0.79239,250.74,0.85357,-0.51198,0.096347,13.597,-0.45949,-0.65271,0.60236,136.35
    14192 
    14193 > ui mousemode right "translate selected models"
    14194 
    14195 > view matrix models
    14196 > #26,-0.24551,-0.55843,-0.79239,249.96,0.85357,-0.51198,0.096347,11.663,-0.45949,-0.65271,0.60236,136.34
    14197 
    14198 > view matrix models
    14199 > #26,-0.24551,-0.55843,-0.79239,592.64,0.85357,-0.51198,0.096347,599.4,-0.45949,-0.65271,0.60236,153.8
    14200 
    14201 > view matrix models
    14202 > #26,-0.24551,-0.55843,-0.79239,532.97,0.85357,-0.51198,0.096347,618.49,-0.45949,-0.65271,0.60236,132.21
    14203 
    14204 > view matrix models
    14205 > #26,-0.24551,-0.55843,-0.79239,420.87,0.85357,-0.51198,0.096347,614.97,-0.45949,-0.65271,0.60236,209.09
    14206 
    14207 > view matrix models
    14208 > #26,-0.24551,-0.55843,-0.79239,397.78,0.85357,-0.51198,0.096347,574.65,-0.45949,-0.65271,0.60236,224.44
    14209 
    14210 > ui mousemode right "rotate selected models"
    14211 
    14212 > view matrix models
    14213 > #26,-0.60445,-0.44131,-0.66323,409.18,0.79565,-0.29287,-0.53026,629,0.039771,-0.84822,0.52815,200.04
    14214 
    14215 > view matrix models
    14216 > #26,-0.25929,-0.77775,-0.57261,399.6,0.95494,-0.2951,-0.031597,552.37,-0.1444,-0.555,0.81922,151.5
    14217 
    14218 > view matrix models
    14219 > #26,-0.18014,-0.78848,-0.58809,393.75,0.94986,-0.29479,0.10429,536.87,-0.25559,-0.53981,0.80205,164.3
    14220 
    14221 > ui mousemode right "translate selected models"
    14222 
    14223 > view matrix models
    14224 > #26,-0.18014,-0.78848,-0.58809,398.98,0.94986,-0.29479,0.10429,336.22,-0.25559,-0.53981,0.80205,227.86
    14225 
    14226 > hide #!2 models
    14227 
    14228 > hide #!25 models
    14229 
    14230 > view matrix models
    14231 > #26,-0.18014,-0.78848,-0.58809,387.14,0.94986,-0.29479,0.10429,330.24,-0.25559,-0.53981,0.80205,227.27
    14232 
    14233 > view matrix models
    14234 > #26,-0.18014,-0.78848,-0.58809,381.59,0.94986,-0.29479,0.10429,316.26,-0.25559,-0.53981,0.80205,259.11
    14235 
    14236 > ui mousemode right "rotate selected models"
    14237 
    14238 > view matrix models
    14239 > #26,0.069801,-0.42594,-0.90206,347.04,0.93145,-0.29589,0.21179,305.79,-0.35712,-0.855,0.37608,358.54
    14240 
    14241 > view matrix models
    14242 > #26,0.11925,-0.75307,-0.64705,350.43,0.7515,-0.35744,0.55451,293.05,-0.64886,-0.55238,0.52331,338.03
    14243 
    14244 > view matrix models
    14245 > #26,0.033708,-0.97476,-0.22071,336.27,0.96158,-0.02857,0.27303,263.21,-0.27245,-0.22143,0.93634,207.12
    14246 
    14247 > view matrix models
    14248 > #26,-0.10186,-0.38367,-0.91784,363.29,0.87074,-0.48057,0.10425,347.42,-0.48108,-0.78858,0.38303,363.82
    14249 
    14250 > view matrix models
    14251 > #26,-0.05811,-0.50264,-0.86254,366.02,0.77085,-0.57161,0.28117,348.72,-0.63436,-0.64855,0.42067,360
    14252 
    14253 > view matrix models
    14254 > #26,0.045534,0.040464,-0.99814,305.4,0.73674,-0.67615,0.0061988,397.53,-0.67464,-0.73565,-0.060599,431.77
    14255 
    14256 > view matrix models
    14257 > #26,0.0073716,-0.41136,-0.91144,353.47,0.60513,-0.7238,0.33156,379.72,-0.7961,-0.55398,0.24359,387.91
    14258 
    14259 > view matrix models
    14260 > #26,0.021642,-0.086929,-0.99598,323.07,0.76262,-0.64275,0.072671,382.76,-0.64648,-0.76113,0.052383,418.29
    14261 
    14262 > show #!2 models
    14263 
    14264 > show #14 models
    14265 
    14266 > hide #14 models
    14267 
    14268 > show #14 models
    14269 
    14270 > hide #!24 models
    14271 
    14272 > view matrix models
    14273 > #26,-0.21784,-0.75425,-0.61939,385.46,0.8863,-0.41862,0.19806,327.18,-0.40868,-0.50582,0.75969,277.38
    14274 
    14275 > ui mousemode right "translate selected models"
    14276 
    14277 > view matrix models
    14278 > #26,-0.21784,-0.75425,-0.61939,316.76,0.8863,-0.41862,0.19806,384.77,-0.40868,-0.50582,0.75969,217.83
    14279 
    14280 > view matrix models
    14281 > #26,-0.21784,-0.75425,-0.61939,326.64,0.8863,-0.41862,0.19806,395.43,-0.40868,-0.50582,0.75969,209.78
    14282 
    14283 > view matrix models
    14284 > #26,-0.21784,-0.75425,-0.61939,309.39,0.8863,-0.41862,0.19806,411.56,-0.40868,-0.50582,0.75969,196.15
    14285 
    14286 > view matrix models
    14287 > #26,-0.21784,-0.75425,-0.61939,315.14,0.8863,-0.41862,0.19806,414.61,-0.40868,-0.50582,0.75969,189.93
    14288 
    14289 > hide #14 models
    14290 
    14291 > hide #!2 models
    14292 
    14293 > show #!24 models
    14294 
    14295 > view matrix models
    14296 > #26,-0.21784,-0.75425,-0.61939,420.73,0.8863,-0.41862,0.19806,552.8,-0.40868,-0.50582,0.75969,126.98
    14297 
    14298 > ui mousemode right "rotate selected models"
    14299 
    14300 > view matrix models
    14301 > #26,-0.51625,-0.43407,-0.73828,430.29,0.81685,0.0095092,-0.57678,600.98,0.25738,-0.90083,0.34966,147.18
    14302 
    14303 > view matrix models
    14304 > #26,-0.68081,-0.26296,-0.68363,422.02,0.70913,-0.0029331,-0.70507,629.8,0.1834,-0.9648,0.18847,182.23
    14305 
    14306 > view matrix models
    14307 > #26,-0.34302,0.054922,-0.93772,375.79,0.93822,0.068485,-0.3392,552.15,0.04559,-0.99614,-0.075021,232.68
    14308 
    14309 > view matrix models
    14310 > #26,-0.044818,0.28108,-0.95864,317.48,0.99878,0.032376,-0.037202,513.95,0.02058,-0.95914,-0.28219,255.54
    14311 
    14312 > view matrix models
    14313 > #26,0.97922,-0.0934,-0.18,154.39,0.048241,0.96943,-0.24058,533.61,0.19697,0.2269,0.95379,-52.037
    14314 
    14315 > view matrix models
    14316 > #26,0.7558,-0.32714,-0.56723,253.32,0.39406,0.91907,-0.005006,472.67,0.52297,-0.21974,0.82354,-20.201
    14317 
    14318 > view matrix models
    14319 > #26,0.49746,0.46252,-0.73389,207.89,-0.11953,0.87448,0.4701,480.05,0.85921,-0.14614,0.49031,-27.722
    14320 
    14321 > view matrix models
    14322 > #26,0.53292,0.77579,-0.33785,119.69,-0.8442,0.51463,-0.14993,678.27,0.057552,0.36511,0.92918,-49.863
    14323 
    14324 > view matrix models
    14325 > #26,0.39221,0.91279,-0.11396,92.824,-0.90758,0.40417,0.11377,667.52,0.1499,0.058805,0.98695,-30.539
    14326 
    14327 > show #14 models
    14328 
    14329 > hide #14 models
    14330 
    14331 > show #14 models
    14332 
    14333 > show #!2 models
    14334 
    14335 > hide #!24 models
    14336 
    14337 > show #!24 models
    14338 
    14339 > show #5 models
    14340 
    14341 > hide #5 models
    14342 
    14343 > show #5 models
    14344 
    14345 > hide #5 models
    14346 
    14347 > hide #14 models
    14348 
    14349 > ui mousemode right "translate selected models"
    14350 
    14351 > view matrix models
    14352 > #26,0.39221,0.91279,-0.11396,-11.208,-0.90758,0.40417,0.11377,640.17,0.1499,0.058805,0.98695,-91.938
    14353 
    14354 > view matrix models
    14355 > #26,0.39221,0.91279,-0.11396,-27.887,-0.90758,0.40417,0.11377,602.33,0.1499,0.058805,0.98695,-95.765
    14356 
    14357 > ui mousemode right "rotate selected models"
    14358 
    14359 > view matrix models
    14360 > #26,0.49159,0.86948,-0.048413,-41.7,-0.86875,0.48582,-0.096179,612.96,-0.060106,0.08934,0.99419,-76.494
    14361 
    14362 > view matrix models
    14363 > #26,0.63015,0.72034,-0.28988,-11.061,-0.77523,0.56251,-0.2874,615.78,-0.043966,0.40583,0.91289,-106.54
    14364 
    14365 > view matrix models
    14366 > #26,0.18166,0.81837,-0.54522,58.138,-0.93619,-0.02574,-0.35055,711.75,-0.30092,0.57411,0.76147,-79.684
    14367 
    14368 > view matrix models
    14369 > #26,-0.065015,0.73106,-0.67921,112.31,-0.88132,-0.36131,-0.30453,740.19,-0.46803,0.5788,0.66778,-50.267
    14370 
    14371 > view matrix models
    14372 > #26,0.76476,-0.62586,-0.15307,118.4,0.61006,0.62695,0.48452,360.14,-0.20728,-0.46393,0.86128,21.961
    14373 
    14374 > view matrix models
    14375 > #26,0.53158,-0.80095,-0.2755,180.17,0.7559,0.30184,0.58096,371.1,-0.38216,-0.51707,0.76589,59.368
    14376 
    14377 > view matrix models
    14378 > #26,0.22358,-0.68272,-0.69564,250.5,0.91149,0.39925,-0.098881,422.09,0.34524,-0.61196,0.71156,-5.2251
    14379 
    14380 > view matrix models
    14381 > #26,-0.10881,-0.70329,-0.70252,291.4,0.707,0.44205,-0.55204,493.62,0.6988,-0.55675,0.44913,-20.868
    14382 
    14383 > view matrix models
    14384 > #26,0.16701,0.038305,-0.98521,204.94,0.17251,0.9827,0.067452,416.4,0.97075,-0.18123,0.15751,-62.097
    14385 
    14386 > view matrix models
    14387 > #26,0.71839,0.024035,-0.69522,109.99,0.069176,0.99198,0.10578,422.47,0.69219,-0.12408,0.71097,-102.72
    14388 
    14389 > view matrix models
    14390 > #26,0.51369,-0.58015,-0.6321,197.9,0.73544,0.67717,-0.023849,399.96,0.44187,-0.45262,0.77452,-42.636
    14391 
    14392 > view matrix models
    14393 > #26,0.6187,-0.68507,-0.38457,169.33,0.69559,0.70522,-0.1372,414.5,0.3652,-0.18262,0.91284,-82.543
    14394 
    14395 > view matrix models
    14396 > #26,0.80188,-0.18928,-0.56671,110.86,0.10444,0.9783,-0.17897,453.72,0.58828,0.084321,0.80425,-126.87
    14397 
    14398 > ui mousemode right "translate selected models"
    14399 
    14400 > view matrix models
    14401 > #26,0.80188,-0.18928,-0.56671,236.45,0.10444,0.9783,-0.17897,319.92,0.58828,0.084321,0.80425,-22.749
    14402 
    14403 > view matrix models
    14404 > #26,0.80188,-0.18928,-0.56671,242.7,0.10444,0.9783,-0.17897,300.28,0.58828,0.084321,0.80425,29.395
    14405 
    14406 > view matrix models
    14407 > #26,0.80188,-0.18928,-0.56671,191.08,0.10444,0.9783,-0.17897,321.71,0.58828,0.084321,0.80425,90.841
    14408 
    14409 > view matrix models
    14410 > #26,0.80188,-0.18928,-0.56671,182.54,0.10444,0.9783,-0.17897,326.98,0.58828,0.084321,0.80425,80.916
    14411 
    14412 > view matrix models
    14413 > #26,0.80188,-0.18928,-0.56671,182.69,0.10444,0.9783,-0.17897,327.89,0.58828,0.084321,0.80425,80.843
    14414 
    14415 > fitmap #26 inMap #22
    14416 
    14417 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage4_postprocess.mrc
    14418 using 93502 points 
    14419 correlation = 0.8191, correlation about mean = 0.04296, overlap = 7085 
    14420 steps = 180, shift = 57.1, angle = 36.5 degrees 
    14421  
    14422 Position of emd_3720_2017_leaf.map (#26) relative to
    14423 COPI_golph_linkage4_postprocess.mrc (#22) coordinates: 
    14424 Matrix rotation and translation 
    14425 -0.93252958 0.26581440 -0.24439980 437.12443068 
    14426 -0.18450015 -0.93256337 -0.31029862 395.49279816 
    14427 -0.31040014 -0.24427084 0.91868574 266.69578048 
    14428 Axis 0.14357295 0.14351329 -0.97917861 
    14429 Axis point 262.85810028 190.06906788 -0.00000000 
    14430 Rotation angle (degrees) 166.70616314 
    14431 Shift along axis -141.62508659 
    14432  
    14433 
    14434 > view matrix models
    14435 > #26,0.94986,0.12444,-0.28683,108.02,-0.0097878,0.92877,0.37052,253.1,0.31251,-0.34913,0.88343,168.61
    14436 
    14437 > view matrix models
    14438 > #26,0.94986,0.12444,-0.28683,99.574,-0.0097878,0.92877,0.37052,228.44,0.31251,-0.34913,0.88343,163.46
    14439 
    14440 > fitmap #26 inMap #22
    14441 
    14442 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage4_postprocess.mrc
    14443 using 93502 points 
    14444 correlation = 0.8192, correlation about mean = 0.04309, overlap = 7085 
    14445 steps = 180, shift = 53.5, angle = 0.044 degrees 
    14446  
    14447 Position of emd_3720_2017_leaf.map (#26) relative to
    14448 COPI_golph_linkage4_postprocess.mrc (#22) coordinates: 
    14449 Matrix rotation and translation 
    14450 -0.93270694 0.26582143 -0.24371438 437.05105992 
    14451 -0.18476560 -0.93258596 -0.31007271 395.52547842 
    14452 -0.30970858 -0.24417694 0.91894407 266.51240542 
    14453 Axis 0.14320899 0.14342291 -0.97924515 
    14454 Axis point 262.77060575 190.05227553 0.00000000 
    14455 Rotation angle (degrees) 166.69889182 
    14456 Shift along axis -141.66392298 
    14457  
    14458 
    14459 > view matrix models
    14460 > #26,0.94965,0.12438,-0.28757,108.3,-0.0094766,0.92881,0.37044,287.59,0.31317,-0.34906,0.88322,198.4
    14461 
    14462 > ui mousemode right "rotate selected models"
    14463 
    14464 > view matrix models
    14465 > #26,0.98636,-0.009641,-0.16433,105.6,0.013796,0.99961,0.024164,317.38,0.16403,-0.026101,0.98611,164.55
    14466 
    14467 > view matrix models
    14468 > #26,0.90223,0.27722,-0.33034,100.45,0.0083559,0.75463,0.6561,272.67,0.43116,-0.59471,0.67854,238.56
    14469 
    14470 > view matrix models
    14471 > #26,0.97795,0.18433,-0.098135,75.567,-0.19537,0.97357,-0.11826,360.98,0.073742,0.13483,0.98812,155.31
    14472 
    14473 > view matrix models
    14474 > #26,0.98831,-0.084837,-0.12669,109.93,0.13292,0.88649,0.44324,267.94,0.074706,-0.4549,0.8874,237.55
    14475 
    14476 > view matrix models
    14477 > #26,0.45356,0.16623,-0.87559,228.87,0.63581,0.6281,0.4486,241.25,0.62452,-0.76017,0.17919,295.38
    14478 
    14479 > view matrix models
    14480 > #26,0.48239,0.19903,-0.85305,219.02,0.62258,0.60715,0.49372,239.92,0.6162,-0.76925,0.16897,298.62
    14481 
    14482 > view matrix models
    14483 > #26,0.39996,0.17569,-0.89954,236.63,0.65873,0.62731,0.41541,242.67,0.63727,-0.7587,0.13517,298.96
    14484 
    14485 > ui mousemode right "translate selected models"
    14486 
    14487 > view matrix models
    14488 > #26,0.39996,0.17569,-0.89954,220.75,0.65873,0.62731,0.41541,229.35,0.63727,-0.7587,0.13517,271.21
    14489 
    14490 > view matrix models
    14491 > #26,0.39996,0.17569,-0.89954,223.18,0.65873,0.62731,0.41541,415.04,0.63727,-0.7587,0.13517,169.51
    14492 
    14493 > view matrix models
    14494 > #26,0.39996,0.17569,-0.89954,222.24,0.65873,0.62731,0.41541,222.72,0.63727,-0.7587,0.13517,282.19
    14495 
    14496 > show #!25 models
    14497 
    14498 > hide #!24 models
    14499 
    14500 > view matrix models
    14501 > #26,0.39996,0.17569,-0.89954,250.7,0.65873,0.62731,0.41541,297.87,0.63727,-0.7587,0.13517,290.12
    14502 
    14503 > ui mousemode right "rotate selected models"
    14504 
    14505 > view matrix models
    14506 > #26,0.72297,0.092659,-0.68464,198.69,0.36577,0.78936,0.49308,302.5,0.58611,-0.6069,0.53679,230.36
    14507 
    14508 > view matrix models
    14509 > #26,0.94252,-0.0065676,-0.33407,144.31,0.14611,0.90725,0.39439,324.93,0.3005,-0.42053,0.85607,202.74
    14510 
    14511 > view matrix models
    14512 > #26,0.75485,0.21363,-0.62013,173.01,0.41313,0.57948,0.70251,297.49,0.50943,-0.78649,0.34916,282.65
    14513 
    14514 > view matrix models
    14515 > #26,0.7639,0.072934,-0.6412,191.29,-0.0057774,0.99433,0.10622,365.74,0.64531,-0.077434,0.75998,134.05
    14516 
    14517 > view matrix models
    14518 > #26,0.84667,0.53025,-0.044432,56.829,-0.42374,0.72239,0.54644,393.58,0.32185,-0.44383,0.83632,205.44
    14519 
    14520 > view matrix models
    14521 > #26,0.78791,0.55369,-0.26947,87.245,-0.29707,0.7251,0.62128,370.08,0.53939,-0.40946,0.7358,188.57
    14522 
    14523 > show #!24 models
    14524 
    14525 > view matrix models
    14526 > #26,0.69494,0.52906,-0.48699,126.39,-0.14795,0.76796,0.62318,347.85,0.70368,-0.36102,0.61196,178.8
    14527 
    14528 > view matrix models
    14529 > #26,0.57492,0.81224,0.098684,37.007,-0.81802,0.56796,0.090909,510.43,0.017791,-0.13299,0.99096,184.46
    14530 
    14531 > view matrix models
    14532 > #26,0.66417,0.74742,0.015822,44.43,-0.7138,0.62772,0.31058,465.57,0.2222,-0.21757,0.95042,176.21
    14533 
    14534 > ui mousemode right "translate selected models"
    14535 
    14536 > view matrix models
    14537 > #26,0.66417,0.74742,0.015822,60.06,-0.7138,0.62772,0.31058,450.95,0.2222,-0.21757,0.95042,177.54
    14538 
    14539 > view matrix models
    14540 > #26,0.66417,0.74742,0.015822,62.679,-0.7138,0.62772,0.31058,438.29,0.2222,-0.21757,0.95042,184.42
    14541 
    14542 > ui mousemode right "rotate selected models"
    14543 
    14544 > view matrix models
    14545 > #26,0.62092,0.68679,-0.37785,121.29,-0.56834,0.72642,0.3864,401.08,0.53985,-0.025178,0.84138,138.34
    14546 
    14547 > view matrix models
    14548 > #26,0.50831,0.32462,-0.79765,226.87,-0.54067,0.84123,-0.0021948,430.1,0.6703,0.43238,0.60312,97.032
    14549 
    14550 > view matrix models
    14551 > #26,0.4757,0.28143,-0.83337,239.93,-0.52107,0.85346,-0.0092249,427.25,0.70865,0.43863,0.55264,97.902
    14552 
    14553 > view matrix models
    14554 > #26,0.23458,0.15317,-0.95995,297.49,-0.34217,0.93732,0.065949,388.1,0.90989,0.31299,0.27229,123.23
    14555 
    14556 > view matrix models
    14557 > #26,0.67714,0.59448,-0.43368,132.54,-0.70882,0.36868,-0.60137,576.33,-0.19761,0.71461,0.67103,153.54
    14558 
    14559 > view matrix models
    14560 > #26,0.30651,0.95186,-0.0026574,80.92,-0.47629,0.15095,-0.86624,607.28,-0.82414,0.26678,0.49963,298.21
    14561 
    14562 > view matrix models
    14563 > #26,-0.90777,0.31468,0.27735,261.46,-0.3425,-0.93779,-0.056967,626.69,0.24217,-0.14671,0.95908,172.67
    14564 
    14565 > view matrix models
    14566 > #26,-0.95054,0.092395,-0.29655,360.61,-0.24645,-0.80546,0.53897,529.66,-0.18907,0.5854,0.78839,154.16
    14567 
    14568 > view matrix models
    14569 > #26,-0.64685,0.23093,-0.72681,360.46,-0.24434,-0.96557,-0.089336,622.72,-0.72242,0.1198,0.681,282.85
    14570 
    14571 > view matrix models
    14572 > #26,-0.45956,0.76938,-0.44369,241.51,-0.40389,-0.62596,-0.66711,668.41,-0.79099,-0.12738,0.59842,329.89
    14573 
    14574 > view matrix models
    14575 > #26,-0.98818,-0.1014,0.11501,339.44,0.007034,-0.77928,-0.62664,635.43,0.15316,-0.61842,0.77078,261.33
    14576 
    14577 > view matrix models
    14578 > #26,-0.80115,-0.57571,-0.16347,407.81,0.35468,-0.67675,0.64514,433.7,-0.48204,0.45887,0.74637,207.41
    14579 
    14580 > view matrix models
    14581 > #26,0.028152,-0.34522,-0.9381,377.83,0.081628,-0.93454,0.34636,530.68,-0.99627,-0.086326,0.0018701,418.64
    14582 
    14583 > view matrix models
    14584 > #26,-0.59574,-0.59267,-0.54207,431.28,0.62167,-0.76759,0.15602,472.07,-0.50855,-0.24404,0.82573,285.02
    14585 
    14586 > view matrix models
    14587 > #26,-0.55578,-0.14471,-0.81864,405.88,0.63036,-0.71536,-0.3015,518.85,-0.54199,-0.68361,0.4888,381.1
    14588 
    14589 > view matrix models
    14590 > #26,-0.27457,-0.89244,-0.35801,409.01,0.89272,-0.37493,0.24996,383.38,-0.3573,-0.25097,0.89964,260
    14591 
    14592 > view matrix models
    14593 > #26,-0.25988,-0.85719,-0.44462,413.36,0.87504,-0.40377,0.26698,386.82,-0.40838,-0.31968,0.855,279.27
    14594 
    14595 > view matrix models
    14596 > #26,-0.27306,-0.90879,-0.31552,405.77,0.89632,-0.35945,0.25962,379.98,-0.34935,-0.21191,0.91272,252.89
    14597 
    14598 > view matrix models
    14599 > #26,-0.2585,-0.94035,-0.22116,396.76,0.90227,-0.31682,0.29247,370.34,-0.34509,-0.12394,0.93035,239.82
    14600 
    14601 > ui mousemode right "translate selected models"
    14602 
    14603 > view matrix models
    14604 > #26,-0.2585,-0.94035,-0.22116,378.78,0.90227,-0.31682,0.29247,361.51,-0.34509,-0.12394,0.93035,233.92
    14605 
    14606 > view matrix models
    14607 > #26,-0.2585,-0.94035,-0.22116,395.2,0.90227,-0.31682,0.29247,535.16,-0.34509,-0.12394,0.93035,46.461
    14608 
    14609 > view matrix models
    14610 > #26,-0.2585,-0.94035,-0.22116,429.09,0.90227,-0.31682,0.29247,603.62,-0.34509,-0.12394,0.93035,61.304
    14611 
    14612 > view matrix models
    14613 > #26,-0.2585,-0.94035,-0.22116,377.36,0.90227,-0.31682,0.29247,554.14,-0.34509,-0.12394,0.93035,21.232
    14614 
    14615 > view matrix models
    14616 > #26,-0.2585,-0.94035,-0.22116,358.41,0.90227,-0.31682,0.29247,559.46,-0.34509,-0.12394,0.93035,-0.86888
    14617 
    14618 > ui mousemode right "rotate selected models"
    14619 
    14620 > view matrix models
    14621 > #26,-0.2358,-0.91371,-0.33095,365.62,0.8913,-0.33905,0.30104,562.34,-0.38727,-0.22399,0.89434,20.11
    14622 
    14623 > view matrix models
    14624 > #26,-0.21257,-0.40815,-0.88782,368.32,0.91596,-0.3997,-0.035558,606.53,-0.34035,-0.82076,0.45881,137.51
    14625 
    14626 > view matrix models
    14627 > #26,-0.73074,0.45324,-0.51048,279.51,-0.51806,-0.85516,-0.017677,821.18,-0.44456,0.25154,0.85971,-26.133
    14628 
    14629 > view matrix models
    14630 > #26,-0.36839,0.55336,-0.74705,254.46,-0.58202,-0.76388,-0.27881,848.34,-0.72494,0.33208,0.60347,26.231
    14631 
    14632 > view matrix models
    14633 > #26,-0.59807,0.34857,-0.72168,301.93,-0.58645,-0.80408,0.097626,809.2,-0.54626,0.48161,0.68531,-21.524
    14634 
    14635 > ui mousemode right "translate selected models"
    14636 
    14637 > view matrix models
    14638 > #26,-0.59807,0.34857,-0.72168,391.36,-0.58645,-0.80408,0.097626,575.05,-0.54626,0.48161,0.68531,148.98
    14639 
    14640 > view matrix models
    14641 > #26,-0.59807,0.34857,-0.72168,361.82,-0.58645,-0.80408,0.097626,532.94,-0.54626,0.48161,0.68531,200.94
    14642 
    14643 > view matrix models
    14644 > #26,-0.59807,0.34857,-0.72168,356.4,-0.58645,-0.80408,0.097626,558.7,-0.54626,0.48161,0.68531,176.41
    14645 
    14646 > view matrix models
    14647 > #26,-0.59807,0.34857,-0.72168,368.66,-0.58645,-0.80408,0.097626,557.25,-0.54626,0.48161,0.68531,214.27
    14648 
    14649 > view matrix models
    14650 > #26,-0.59807,0.34857,-0.72168,320.04,-0.58645,-0.80408,0.097626,573.85,-0.54626,0.48161,0.68531,204.67
    14651 
    14652 > view matrix models
    14653 > #26,-0.59807,0.34857,-0.72168,318.61,-0.58645,-0.80408,0.097626,590.51,-0.54626,0.48161,0.68531,205.24
    14654 
    14655 > view matrix models
    14656 > #26,-0.59807,0.34857,-0.72168,312.51,-0.58645,-0.80408,0.097626,585.13,-0.54626,0.48161,0.68531,203.51
    14657 
    14658 > view matrix models
    14659 > #26,-0.59807,0.34857,-0.72168,312.1,-0.58645,-0.80408,0.097626,578.25,-0.54626,0.48161,0.68531,215.8
    14660 
    14661 > hide #!2 models
    14662 
    14663 > hide #!25 models
    14664 
    14665 > view matrix models
    14666 > #26,-0.59807,0.34857,-0.72168,312.84,-0.58645,-0.80408,0.097626,591.21,-0.54626,0.48161,0.68531,214.33
    14667 
    14668 > ui mousemode right "rotate selected models"
    14669 
    14670 > view matrix models
    14671 > #26,-0.62408,0.41993,-0.65893,299.85,-0.5729,-0.81937,0.020419,600.62,-0.53133,0.39024,0.75193,215.69
    14672 
    14673 > view matrix models
    14674 > #26,-0.63461,0.48084,-0.60504,287.4,-0.76945,-0.3199,0.55282,500.34,0.072262,0.81637,0.573,117.57
    14675 
    14676 > view matrix models
    14677 > #26,-0.63776,0.48805,-0.59588,285.82,-0.76503,-0.31164,0.56356,497.59,0.089345,0.81528,0.57213,115.87
    14678 
    14679 > ui mousemode right "translate selected models"
    14680 
    14681 > view matrix models
    14682 > #26,-0.63776,0.48805,-0.59588,227.16,-0.76503,-0.31164,0.56356,692.79,0.089345,0.81528,0.57213,2.3047
    14683 
    14684 > hide #!24 models
    14685 
    14686 > show #!24 models
    14687 
    14688 > show #!25 models
    14689 
    14690 > hide #!25 models
    14691 
    14692 > show #!25 models
    14693 
    14694 > ui mousemode right "rotate selected models"
    14695 
    14696 > view matrix models
    14697 > #26,-0.65811,0.75193,0.038762,123.02,-0.69008,-0.62297,0.36838,744.55,0.30114,0.21568,0.92887,7.8591
    14698 
    14699 > view matrix models
    14700 > #26,0.64657,0.73269,-0.21242,7.2717,-0.13939,0.38723,0.91138,497.41,0.75002,-0.55966,0.3525,117.72
    14701 
    14702 > view matrix models
    14703 > #26,0.87638,0.30024,-0.37658,52.303,-0.25871,0.95299,0.15774,532.28,0.40624,-0.040819,0.91286,28.499
    14704 
    14705 > view matrix models
    14706 > #26,0.96603,-0.20024,-0.16339,76.788,0.24354,0.9169,0.31619,461.03,0.086499,-0.34524,0.93452,98.51
    14707 
    14708 > view matrix models
    14709 > #26,0.62093,-0.18719,-0.76119,184.86,0.56613,0.77874,0.27031,446.44,0.54216,-0.59877,0.58951,117.95
    14710 
    14711 > view matrix models
    14712 > #26,0.62142,0.048735,-0.78196,159.07,0.36972,0.8617,0.34752,449.64,0.69075,-0.50507,0.51746,98.434
    14713 
    14714 > ui mousemode right "translate selected models"
    14715 
    14716 > view matrix models
    14717 > #26,0.62142,0.048735,-0.78196,178.93,0.36972,0.8617,0.34752,255.45,0.69075,-0.50507,0.51746,215.24
    14718 
    14719 > view matrix models
    14720 > #26,0.62142,0.048735,-0.78196,178.44,0.36972,0.8617,0.34752,250.07,0.69075,-0.50507,0.51746,184.98
    14721 
    14722 > view matrix models
    14723 > #26,0.62142,0.048735,-0.78196,186.12,0.36972,0.8617,0.34752,252.09,0.69075,-0.50507,0.51746,191.86
    14724 
    14725 > view matrix models
    14726 > #26,0.62142,0.048735,-0.78196,178.97,0.36972,0.8617,0.34752,238.6,0.69075,-0.50507,0.51746,178.28
    14727 
    14728 > view matrix models
    14729 > #26,0.62142,0.048735,-0.78196,181.67,0.36972,0.8617,0.34752,243.68,0.69075,-0.50507,0.51746,183.36
    14730 
    14731 > view matrix models
    14732 > #26,0.62142,0.048735,-0.78196,188,0.36972,0.8617,0.34752,242.78,0.69075,-0.50507,0.51746,190.9
    14733 
    14734 > view matrix models
    14735 > #26,0.62142,0.048735,-0.78196,181.45,0.36972,0.8617,0.34752,464.58,0.69075,-0.50507,0.51746,12.856
    14736 
    14737 > view matrix models
    14738 > #26,0.62142,0.048735,-0.78196,166.35,0.36972,0.8617,0.34752,436.96,0.69075,-0.50507,0.51746,19.663
    14739 
    14740 > ui mousemode right "rotate selected models"
    14741 
    14742 > view matrix models
    14743 > #26,0.54567,0.45958,-0.70074,116.25,-0.17903,0.88083,0.43828,486.09,0.81865,-0.11371,0.56292,-46.942
    14744 
    14745 > view matrix models
    14746 > #26,0.7665,0.32532,-0.55375,89.944,-0.045829,0.88772,0.45809,467.85,0.6406,-0.32575,0.69535,-17.084
    14747 
    14748 > view matrix models
    14749 > #26,-0.87301,-0.22576,-0.43231,327.05,-0.48636,0.33712,0.80611,542.42,-0.036249,0.91399,-0.4041,41.196
    14750 
    14751 > show #!2 models
    14752 
    14753 > ui mousemode right "translate selected models"
    14754 
    14755 > ui mousemode right "rotate selected models"
    14756 
    14757 > view matrix models
    14758 > #26,-0.93178,-0.35392,0.080729,288.46,0.020776,0.17003,0.98522,483.83,-0.36242,0.91969,-0.15108,47.57
    14759 
    14760 > view matrix models
    14761 > #26,-0.8114,-0.20862,-0.546,331.45,-0.58143,0.38366,0.71746,558.09,0.059797,0.8996,-0.4326,35.407
    14762 
    14763 > view matrix models
    14764 > #26,-0.9453,-0.28424,-0.16007,310.08,-0.23189,0.2404,0.94257,509.06,-0.22943,0.92812,-0.29316,48.281
    14765 
    14766 > view matrix models
    14767 > #26,-0.83291,-0.21342,-0.5106,330.28,-0.55266,0.36871,0.74741,553.08,0.02875,0.90471,-0.42505,37.419
    14768 
    14769 > view matrix models
    14770 > #26,-0.78517,-0.204,-0.58471,332.5,-0.61194,0.40054,0.68198,563.71,0.09507,0.89328,-0.43933,32.963
    14771 
    14772 > view matrix models
    14773 > #26,-0.68822,0.44367,-0.57403,242.88,-0.67297,-0.68599,0.27664,748.29,-0.27105,0.5767,0.77069,-30.601
    14774 
    14775 > view matrix models
    14776 > #26,-0.80555,0.23125,-0.54554,278.18,-0.45282,-0.83407,0.31509,736.52,-0.38215,0.50085,0.7766,-9.6594
    14777 
    14778 > ui mousemode right "translate selected models"
    14779 
    14780 > view matrix models
    14781 > #26,-0.80555,0.23125,-0.54554,406.6,-0.45282,-0.83407,0.31509,506.62,-0.38215,0.50085,0.7766,109.41
    14782 
    14783 > view matrix models
    14784 > #26,-0.80555,0.23125,-0.54554,340.76,-0.45282,-0.83407,0.31509,529.94,-0.38215,0.50085,0.7766,184.06
    14785 
    14786 > view matrix models
    14787 > #26,-0.80555,0.23125,-0.54554,370.8,-0.45282,-0.83407,0.31509,551.4,-0.38215,0.50085,0.7766,188.66
    14788 
    14789 > ui mousemode right "rotate selected models"
    14790 
    14791 > view matrix models
    14792 > #26,-0.86554,0.34384,-0.36416,342.73,-0.3952,-0.91554,0.074845,582.97,-0.30766,0.20869,0.92833,197.22
    14793 
    14794 > view matrix models
    14795 > #26,-0.57435,-0.048218,-0.81719,410.09,-0.54075,-0.72712,0.42296,535.84,-0.61459,0.68482,0.39155,238.45
    14796 
    14797 > view matrix models
    14798 > #26,-0.58147,0.72857,0.36205,178.88,-0.67902,-0.67973,0.27732,563.02,0.44814,-0.084588,0.88995,151.24
    14799 
    14800 > view matrix models
    14801 > #26,-0.45583,0.77778,-0.43275,252.6,-0.84755,-0.52777,-0.055811,603.27,-0.2718,0.34134,0.89978,180.69
    14802 
    14803 > view matrix models
    14804 > #26,-0.56126,0.73968,0.3713,174.17,-0.82748,-0.49272,-0.26928,622,-0.016233,-0.45837,0.88861,248.62
    14805 
    14806 > view matrix models
    14807 > #26,-0.39826,0.79346,-0.46023,247.45,-0.9024,-0.42891,0.041432,586.18,-0.16452,0.43181,0.88683,159.26
    14808 
    14809 > view matrix models
    14810 > #26,-0.3309,0.18376,-0.9256,367.61,-0.94159,0.0006637,0.33675,504.43,0.062497,0.98297,0.17281,151.99
    14811 
    14812 > view matrix models
    14813 > #26,0.013316,0.99308,-0.11664,136.45,-0.84079,0.074259,0.53625,460.68,0.5412,0.090931,0.83596,126.1
    14814 
    14815 > view matrix models
    14816 > #26,0.10532,0.98267,0.15251,95.505,-0.72568,-0.028914,0.68742,442.13,0.67992,-0.18307,0.71006,158
    14817 
    14818 > view matrix models
    14819 > #26,0.15571,0.98292,0.098089,96.195,-0.91903,0.10775,0.37918,484.08,0.36214,-0.14919,0.92011,165.13
    14820 
    14821 > view matrix models
    14822 > #26,0.018866,0.74254,-0.66953,231.02,-0.93228,0.25502,0.25655,482.46,0.36124,0.61935,0.69707,99.734
    14823 
    14824 > view matrix models
    14825 > #26,0.33265,0.91006,0.24723,67.264,-0.82541,0.15418,0.54307,448.59,0.45611,-0.38472,0.80247,196.52
    14826 
    14827 > view matrix models
    14828 > #26,0.31892,0.9244,0.20922,71.593,-0.82434,0.16161,0.54253,447.64,0.46771,-0.34549,0.81356,189.21
    14829 
    14830 > ui mousemode right "translate selected models"
    14831 
    14832 > view matrix models
    14833 > #26,0.31892,0.9244,0.20922,90.128,-0.82434,0.16161,0.54253,444.09,0.46771,-0.34549,0.81356,194.9
    14834 
    14835 > view matrix models
    14836 > #26,0.31892,0.9244,0.20922,73.346,-0.82434,0.16161,0.54253,453.64,0.46771,-0.34549,0.81356,188.67
    14837 
    14838 > view matrix models
    14839 > #26,0.31892,0.9244,0.20922,46.838,-0.82434,0.16161,0.54253,446.35,0.46771,-0.34549,0.81356,203.89
    14840 
    14841 > view matrix models
    14842 > #26,0.31892,0.9244,0.20922,84.565,-0.82434,0.16161,0.54253,459.95,0.46771,-0.34549,0.81356,199.98
    14843 
    14844 > view matrix models
    14845 > #26,0.31892,0.9244,0.20922,66.802,-0.82434,0.16161,0.54253,459.73,0.46771,-0.34549,0.81356,198.58
    14846 
    14847 > ui mousemode right "rotate selected models"
    14848 
    14849 > view matrix models
    14850 > #26,-0.097853,0.95756,-0.27113,166.72,-0.93201,0.0073568,0.36236,511.62,0.34897,0.28815,0.89173,127.08
    14851 
    14852 > view matrix models
    14853 > #26,-0.11013,0.98108,-0.15921,152.09,-0.92073,-0.040374,0.38811,513.01,0.37434,0.18933,0.90775,134.13
    14854 
    14855 > hide #!25 models
    14856 
    14857 > hide #!2 models
    14858 
    14859 > view matrix models
    14860 > #26,-0.13278,0.99067,0.030754,131.09,-0.73407,-0.11915,0.66854,468.19,0.66597,0.066196,0.74304,135.27
    14861 
    14862 > view matrix models
    14863 > #26,-0.17767,0.76886,-0.61423,238.81,-0.97125,-0.036499,0.23526,536.31,0.15846,0.63837,0.75324,123.15
    14864 
    14865 > view matrix models
    14866 > #26,-0.098417,0.66235,-0.74271,257.73,-0.99477,-0.086007,0.055117,566.15,-0.027371,0.74425,0.66735,141.68
    14867 
    14868 > ui mousemode right "translate selected models"
    14869 
    14870 > view matrix models
    14871 > #26,-0.098417,0.66235,-0.74271,292.75,-0.99477,-0.086007,0.055117,574.99,-0.027371,0.74425,0.66735,158.53
    14872 
    14873 > view matrix models
    14874 > #26,-0.098417,0.66235,-0.74271,279.24,-0.99477,-0.086007,0.055117,567.68,-0.027371,0.74425,0.66735,152.74
    14875 
    14876 > fitmap #26 inMap #22
    14877 
    14878 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage4_postprocess.mrc
    14879 using 93502 points 
    14880 correlation = 0.8595, correlation about mean = 0.125, overlap = 7142 
    14881 steps = 212, shift = 65.3, angle = 45.1 degrees 
    14882  
    14883 Position of emd_3720_2017_leaf.map (#26) relative to
    14884 COPI_golph_linkage4_postprocess.mrc (#22) coordinates: 
    14885 Matrix rotation and translation 
    14886 0.58096256 -0.81277432 -0.04336329 248.78856339 
    14887 0.77815419 0.57025937 -0.26321146 48.14211366 
    14888 0.23865984 0.11917268 0.96376310 148.92251809 
    14889 Axis 0.23030141 -0.16985622 0.95818063 
    14890 Axis point 27.47095454 237.58404923 0.00000000 
    14891 Rotation angle (degrees) 56.11743390 
    14892 Shift along axis 191.81379244 
    14893  
    14894 
    14895 > view matrix models
    14896 > #26,-0.75258,0.45055,-0.48023,356.33,-0.63811,-0.67905,0.36292,555.02,-0.16258,0.57957,0.79854,172.51
    14897 
    14898 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and
    14899 > resources/Processing/COPI-Golph_GT/All_Linkages_fitting_Golph_AF_RT.cxs"
    14900 
    14901 ——— End of log from Tue Dec 5 16:56:09 2023 ———
    14902 
    14903 opened ChimeraX session 
    14904 
    14905 > hide #!26 models
    14906 
    14907 > show #!22 models
    14908 
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    14910 
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    14913 > show #!24 models
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    14920 
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    14924 
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    14927 > show #!24 models
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    14930 
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    14933 > hide #!24 models
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    14935 > show #!24 models
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    14937 > hide #!24 models
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    14939 > show #!23 models
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    14950 
    14951 > show #!24 models
    14952 
    14953 > hide #!24 models
    14954 
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    14957 > hide #!23 models
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    14959 > show #!24 models
    14960 
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    14964 
    14965 > hide #!25 models
    14966 
    14967 > hide #!26 models
    14968 
    14969 > show #3 models
    14970 
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    14972 
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    14974 
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    14976 
    14977 > show #8 models
    14978 
    14979 > show #!9 models
    14980 
    14981 > show #10 models
    14982 
    14983 > show #12 models
    14984 
    14985 > show #13 models
    14986 
    14987 > show #14 models
    14988 
    14989 > hide #14 models
    14990 
    14991 > hide #13 models
    14992 
    14993 > hide #12 models
    14994 
    14995 > hide #10 models
    14996 
    14997 > hide #!9 models
    14998 
    14999 > hide #8 models
    15000 
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    15008 
    15009 > show #!2 models
    15010 
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    15014 
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    15018 
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    15036 
    15037 > hide #!24 models
    15038 
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    15040 
    15041 > show #!22 models
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    15049 > show #!21 models
    15050 
    15051 > show #13 models
    15052 
    15053 > show #!25 models
    15054 
    15055 > hide #!25 models
    15056 
    15057 > show #!26 models
    15058 
    15059 > hide #!26 models
    15060 
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    15063 > show #!21 models
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    15065 > hide #13 models
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    15067 > show #13 models
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    15071 > show #13 models
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    15078 
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    15080 
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    15082 
    15083 > show #!2 models
    15084 
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    15086 
    15087 > show #!2 models
    15088 
    15089 > hide #!2 models
    15090 
    15091 > show #!2 models
    15092 
    15093 > rename #3 CopA_F8WHL2.pdb
    15094 
    15095 > show #4 models
    15096 
    15097 > hide #4 models
    15098 
    15099 > show #5 models
    15100 
    15101 > hide #5 models
    15102 
    15103 > rename #4 CopB_Q9JIF7.pdb
    15104 
    15105 > rename #5 CopB_Q9JIF7.pdb
    15106 
    15107 > show #!1 models
    15108 
    15109 > hide #!1 models
    15110 
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    15112 
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    15124 
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    15132 
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    15144 
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    15165 > hide #!25 models
    15166 
    15167 > show #!1 models
    15168 
    15169 > show #!2 models
    15170 
    15171 > hide #!2 models
    15172 
    15173 > hide #!1 models
    15174 
    15175 > show #!1 models
    15176 
    15177 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    15178 > resources/Processing/COPI-Golph_GT/postprocess_20231221.mrc"
    15179 
    15180 Opened postprocess_20231221.mrc as #27, grid size 156,156,156, pixel 2.55,
    15181 shown at level 0.00309, step 1, values float32 
    15182 
    15183 > hide #!27 models
    15184 
    15185 > show #!27 models
    15186 
    15187 > volume #27 level 0.003558
    15188 
    15189 > select add #27
    15190 
    15191 2 models selected 
    15192 
    15193 > ui mousemode right "translate selected models"
    15194 
    15195 > view matrix models #27,1,0,0,118.22,0,1,0,38.774,0,0,1,134.02
    15196 
    15197 > view matrix models #27,1,0,0,113.07,0,1,0,116.67,0,0,1,119.27
    15198 
    15199 > select subtract #27
    15200 
    15201 Nothing selected 
    15202 
    15203 > ui tool show "Fit in Map"
    15204 
    15205 > fitmap #27 inMap #1
    15206 
    15207 Fit map postprocess_20231221.mrc in map postprocess.mrc using 21338 points 
    15208 correlation = 0.8877, correlation about mean = 0.5599, overlap = 1.959 
    15209 steps = 52, shift = 8.5, angle = 0.087 degrees 
    15210  
    15211 Position of postprocess_20231221.mrc (#27) relative to postprocess.mrc (#1)
    15212 coordinates: 
    15213 Matrix rotation and translation 
    15214 0.99999899 -0.00050038 -0.00133045 112.66315082 
    15215 0.00049967 0.99999973 -0.00053675 112.06763162 
    15216 0.00133072 0.00053609 0.99999897 111.78054676 
    15217 Axis 0.35307466 -0.87579648 0.32911823 
    15218 Axis point -89267.57947714 0.00000000 90475.31997439 
    15219 Rotation angle (degrees) 0.08704872 
    15220 Shift along axis -21.58091769 
    15221  
    15222 
    15223 > hide #!1 models
    15224 
    15225 > show #!1 models
    15226 
    15227 > hide #!1 models
    15228 
    15229 > show #!1 models
    15230 
    15231 > show #!2 models
    15232 
    15233 > hide #!2 models
    15234 
    15235 > show #!2 models
    15236 
    15237 > fitmap #2 inMap #1
    15238 
    15239 Fit map emdb 3720 in map postprocess.mrc using 59756 points 
    15240 correlation = 0.8696, correlation about mean = 0.2876, overlap = 132.2 
    15241 steps = 60, shift = 0.0416, angle = 0.0228 degrees 
    15242  
    15243 Position of emdb 3720 (#2) relative to postprocess.mrc (#1) coordinates: 
    15244 Matrix rotation and translation 
    15245 -0.53664251 0.84318753 -0.03239775 278.61248582 
    15246 -0.84367719 -0.53684303 0.00289191 482.08699507 
    15247 -0.01495408 0.02888517 0.99947087 223.63820801 
    15248 Axis 0.01540656 -0.01033910 -0.99982786 
    15249 Axis point 272.71090587 162.46815483 0.00000000 
    15250 Rotation angle (degrees) 122.48014641 
    15251 Shift along axis -224.29159627 
    15252  
    15253 
    15254 > fitmap #2 inMap #1
    15255 
    15256 Fit map emdb 3720 in map postprocess.mrc using 59756 points 
    15257 correlation = 0.8696, correlation about mean = 0.2876, overlap = 132.2 
    15258 steps = 40, shift = 0.0164, angle = 0.0168 degrees 
    15259  
    15260 Position of emdb 3720 (#2) relative to postprocess.mrc (#1) coordinates: 
    15261 Matrix rotation and translation 
    15262 -0.53641656 0.84333481 -0.03230586 278.56998005 
    15263 -0.84382076 -0.53661774 0.00281701 482.07814301 
    15264 -0.01496021 0.02877145 0.99947406 223.65821367 
    15265 Axis 0.01538092 -0.01027924 -0.99982887 
    15266 Axis point 272.73010610 162.45893437 0.00000000 
    15267 Rotation angle (degrees) 122.46471538 
    15268 Shift along axis -224.29067599 
    15269  
    15270 
    15271 > hide #!2 models
    15272 
    15273 > show #3 models
    15274 
    15275 > hide #3 atoms
    15276 
    15277 > show #4 models
    15278 
    15279 > hide #3-4 atoms
    15280 
    15281 > show #5 models
    15282 
    15283 > hide #5 models
    15284 
    15285 > show #5 models
    15286 
    15287 > hide #5 models
    15288 
    15289 > show #5 models
    15290 
    15291 > hide #5 models
    15292 
    15293 > hide #4 models
    15294 
    15295 > show #5 models
    15296 
    15297 > hide #!1 models
    15298 
    15299 > hide #5 models
    15300 
    15301 > show #5 models
    15302 
    15303 > show #6 models
    15304 
    15305 > hide #6 models
    15306 
    15307 > show #6 models
    15308 
    15309 > show #7 models
    15310 
    15311 > show #12 models
    15312 
    15313 > hide #7 models
    15314 
    15315 > hide #6 models
    15316 
    15317 > hide #12 models
    15318 
    15319 > show #6 models
    15320 
    15321 > hide #6 models
    15322 
    15323 > show #6 models
    15324 
    15325 > show #4 models
    15326 
    15327 > hide #4 models
    15328 
    15329 > show #4 models
    15330 
    15331 > show #7 models
    15332 
    15333 > show #8 models
    15334 
    15335 > hide #8 models
    15336 
    15337 > show #8 models
    15338 
    15339 > show #!9 models
    15340 
    15341 > show #10 models
    15342 
    15343 > show #11 models
    15344 
    15345 > hide #3-8,10-11#!9 atoms
    15346 
    15347 > show #12 models
    15348 
    15349 > show #13 models
    15350 
    15351 > hide #3-8,10-13#!9 atoms
    15352 
    15353 > show #14 models
    15354 
    15355 > hide atoms
    15356 
    15357 > show #!15 models
    15358 
    15359 > show #!16 models
    15360 
    15361 > hide #!16 models
    15362 
    15363 > show #!16 models
    15364 
    15365 > hide #!16 models
    15366 
    15367 > hide #!15 models
    15368 
    15369 > hide #14 models
    15370 
    15371 > hide #13 models
    15372 
    15373 > hide #12 models
    15374 
    15375 > hide #11 models
    15376 
    15377 > hide #10 models
    15378 
    15379 > hide #!9 models
    15380 
    15381 > hide #8 models
    15382 
    15383 > hide #7 models
    15384 
    15385 > hide #6 models
    15386 
    15387 > hide #5 models
    15388 
    15389 > hide #4 models
    15390 
    15391 > hide #3 models
    15392 
    15393 > show #!1 models
    15394 
    15395 > hide #!1 models
    15396 
    15397 > show #!1 models
    15398 
    15399 > show #!2 models
    15400 
    15401 > hide #!2 models
    15402 
    15403 > show #!2 models
    15404 
    15405 > hide #!1 models
    15406 
    15407 > show #!1 models
    15408 
    15409 > hide #!2 models
    15410 
    15411 > show #!2 models
    15412 
    15413 > show #3 models
    15414 
    15415 > hide #3 models
    15416 
    15417 > show #3 models
    15418 
    15419 > hide #3 models
    15420 
    15421 > show #4 models
    15422 
    15423 > hide #4 models
    15424 
    15425 > show #4 models
    15426 
    15427 > show #5 models
    15428 
    15429 > hide #5 models
    15430 
    15431 > show #5 models
    15432 
    15433 > hide #5 models
    15434 
    15435 > show #5 models
    15436 
    15437 > hide #5 models
    15438 
    15439 > hide #4 models
    15440 
    15441 > show #4 models
    15442 
    15443 > hide #4 models
    15444 
    15445 > show #6 models
    15446 
    15447 > hide #6 models
    15448 
    15449 > show #6 models
    15450 
    15451 > hide #6 models
    15452 
    15453 > hide #!2 models
    15454 
    15455 > show #4 models
    15456 
    15457 > hide #4 models
    15458 
    15459 > show #4 models
    15460 
    15461 > hide #4 models
    15462 
    15463 > show #3 models
    15464 
    15465 > show #4 models
    15466 
    15467 > hide #3 models
    15468 
    15469 > hide #4 models
    15470 
    15471 > hide #!27 models
    15472 
    15473 > show #!27 models
    15474 
    15475 > hide #!27 models
    15476 
    15477 > show #!27 models
    15478 
    15479 > close #1
    15480 
    15481 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    15482 > resources/Processing/COPI-Golph_GT/postprocess_20231221.mrc"
    15483 
    15484 Opened postprocess_20231221.mrc as #1, grid size 156,156,156, pixel 2.55,
    15485 shown at level 0.00309, step 1, values float32 
    15486 
    15487 > color #1 silver models
    15488 
    15489 > select add #1
    15490 
    15491 2 models selected 
    15492 
    15493 > volume #1 level 0.004024
    15494 
    15495 > view matrix models #1,1,0,0,78.299,0,1,0,79.616,0,0,1,143.65
    15496 
    15497 > view matrix models #1,1,0,0,117.94,0,1,0,120,0,0,1,119.56
    15498 
    15499 > fitmap #1 inMap #27
    15500 
    15501 Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 15259
    15502 points 
    15503 correlation = 0.6104, correlation about mean = 0.1891, overlap = 0.3765 
    15504 steps = 196, shift = 13, angle = 5.06 degrees 
    15505  
    15506 Position of postprocess_20231221.mrc (#1) relative to postprocess_20231221.mrc
    15507 (#27) coordinates: 
    15508 Matrix rotation and translation 
    15509 0.99600058 -0.00210606 0.08932196 -8.32184849 
    15510 0.00171311 0.99998852 0.00447574 -2.40606876 
    15511 -0.08933036 -0.00430482 0.99599275 19.94289709 
    15512 Axis -0.04907846 0.99856678 0.02134700 
    15513 Axis point 218.96581399 0.00000000 103.83296215 
    15514 Rotation angle (degrees) 5.13221794 
    15515 Shift along axis -1.56847579 
    15516  
    15517 
    15518 > select subtract #1
    15519 
    15520 Nothing selected 
    15521 
    15522 > hide #!1 models
    15523 
    15524 > show #!1 models
    15525 
    15526 > hide #!1 models
    15527 
    15528 > show #!1 models
    15529 
    15530 > hide #!1 models
    15531 
    15532 > show #!1 models
    15533 
    15534 > ui mousemode right "translate selected models"
    15535 
    15536 > select add #1
    15537 
    15538 2 models selected 
    15539 
    15540 > view matrix models
    15541 > #1,0.99612,-0.0026007,0.087995,94.016,0.0022587,0.99999,0.0039858,110.22,-0.088004,-0.0037715,0.99611,133.13
    15542 
    15543 > fitmap #1 inMap #27
    15544 
    15545 Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 15259
    15546 points 
    15547 correlation = 1, correlation about mean = 0.9999, overlap = 1.098 
    15548 steps = 72, shift = 0.746, angle = 5.14 degrees 
    15549  
    15550 Position of postprocess_20231221.mrc (#1) relative to postprocess_20231221.mrc
    15551 (#27) coordinates: 
    15552 Matrix rotation and translation 
    15553 0.99999999 0.00007881 -0.00009844 -0.00444357 
    15554 -0.00007883 0.99999998 -0.00017015 0.03235540 
    15555 0.00009842 0.00017015 0.99999998 -0.03743463 
    15556 Axis 0.80342059 -0.46476274 -0.37217060 
    15557 Axis point 0.00000000 230.25071217 177.36655494 
    15558 Rotation angle (degrees) 0.01213425 
    15559 Shift along axis -0.00467558 
    15560  
    15561 
    15562 > fitmap #1 inMap #27
    15563 
    15564 Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 15259
    15565 points 
    15566 correlation = 1, correlation about mean = 0.9999, overlap = 1.097 
    15567 steps = 44, shift = 0.0686, angle = 0.00641 degrees 
    15568  
    15569 Position of postprocess_20231221.mrc (#1) relative to postprocess_20231221.mrc
    15570 (#27) coordinates: 
    15571 Matrix rotation and translation 
    15572 0.99999999 0.00005046 -0.00009993 0.02040220 
    15573 -0.00005047 1.00000000 -0.00006202 0.05116219 
    15574 0.00009993 0.00006202 0.99999999 -0.05958419 
    15575 Axis 0.48458800 -0.78082282 -0.39432244 
    15576 Axis point 622.17817535 0.00000000 235.95812245 
    15577 Rotation angle (degrees) 0.00733296 
    15578 Shift along axis -0.00656656 
    15579  
    15580 
    15581 > fitmap #1 inMap #27
    15582 
    15583 Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 15259
    15584 points 
    15585 correlation = 1, correlation about mean = 0.9999, overlap = 1.098 
    15586 steps = 28, shift = 0.069, angle = 0.00187 degrees 
    15587  
    15588 Position of postprocess_20231221.mrc (#1) relative to postprocess_20231221.mrc
    15589 (#27) coordinates: 
    15590 Matrix rotation and translation 
    15591 1.00000000 0.00002294 -0.00009459 -0.00628371 
    15592 -0.00002294 1.00000000 -0.00007871 -0.00459590 
    15593 0.00009459 0.00007871 0.99999999 -0.03170221 
    15594 Axis 0.62880180 -0.75566048 -0.18326354 
    15595 Axis point 324.80810106 0.00000000 -101.88546019 
    15596 Rotation angle (degrees) 0.00717226 
    15597 Shift along axis 0.00533159 
    15598  
    15599 
    15600 > fitmap #1 inMap #27
    15601 
    15602 Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 15259
    15603 points 
    15604 correlation = 0.9999, correlation about mean = 0.9998, overlap = 1.095 
    15605 steps = 28, shift = 0.0687, angle = 0.0208 degrees 
    15606  
    15607 Position of postprocess_20231221.mrc (#1) relative to postprocess_20231221.mrc
    15608 (#27) coordinates: 
    15609 Matrix rotation and translation 
    15610 0.99999994 -0.00033897 -0.00011199 0.10258927 
    15611 0.00033896 0.99999994 -0.00008446 -0.02689940 
    15612 0.00011202 0.00008442 0.99999999 -0.06841419 
    15613 Axis 0.23018010 -0.30531490 0.92401295 
    15614 Axis point 107.68870552 323.94093990 0.00000000 
    15615 Rotation angle (degrees) 0.02101864 
    15616 Shift along axis -0.03138880 
    15617  
    15618 
    15619 > fitmap #1 inMap #27
    15620 
    15621 Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 15259
    15622 points 
    15623 correlation = 1, correlation about mean = 0.9998, overlap = 1.097 
    15624 steps = 28, shift = 0.073, angle = 0.0235 degrees 
    15625  
    15626 Position of postprocess_20231221.mrc (#1) relative to postprocess_20231221.mrc
    15627 (#27) coordinates: 
    15628 Matrix rotation and translation 
    15629 0.99999999 0.00007038 -0.00009217 -0.02132593 
    15630 -0.00007038 1.00000000 -0.00006245 -0.00222104 
    15631 0.00009217 0.00006245 0.99999999 -0.03014411 
    15632 Axis 0.47413336 -0.69976129 -0.53435166 
    15633 Axis point 283.26765369 0.00000000 -270.23361389 
    15634 Rotation angle (degrees) 0.00754671 
    15635 Shift along axis 0.00755042 
    15636  
    15637 
    15638 > fitmap #1 inMap #27
    15639 
    15640 Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 15259
    15641 points 
    15642 correlation = 1, correlation about mean = 0.9998, overlap = 1.097 
    15643 steps = 44, shift = 0.0615, angle = 0.00861 degrees 
    15644  
    15645 Position of postprocess_20231221.mrc (#1) relative to postprocess_20231221.mrc
    15646 (#27) coordinates: 
    15647 Matrix rotation and translation 
    15648 0.99999999 -0.00000533 -0.00010912 0.01841063 
    15649 0.00000534 1.00000000 0.00006615 -0.01182827 
    15650 0.00010912 -0.00006615 0.99999999 -0.05324245 
    15651 Axis -0.51796938 -0.85437798 0.04178502 
    15652 Axis point 487.31525535 0.00000000 160.83942816 
    15653 Rotation angle (degrees) 0.00731758 
    15654 Shift along axis -0.00165507 
    15655  
    15656 
    15657 > select subtract #1
    15658 
    15659 Nothing selected 
    15660 
    15661 > hide #!1 models
    15662 
    15663 > show #!1 models
    15664 
    15665 > hide #!1 models
    15666 
    15667 > show #!1 models
    15668 
    15669 > hide #!1 models
    15670 
    15671 > show #!1 models
    15672 
    15673 > show #!2 models
    15674 
    15675 > hide #!2 models
    15676 
    15677 > fitmap #2 inMap #1
    15678 
    15679 Fit map emdb 3720 in map postprocess_20231221.mrc using 59756 points 
    15680 correlation = 0.7167, correlation about mean = 0.2038, overlap = 49.31 
    15681 steps = 48, shift = 0.122, angle = 0.144 degrees 
    15682  
    15683 Position of emdb 3720 (#2) relative to postprocess_20231221.mrc (#1)
    15684 coordinates: 
    15685 Matrix rotation and translation 
    15686 -0.53823184 0.84226442 -0.02995221 166.48800349 
    15687 -0.84266804 -0.53843091 0.00165497 370.29528312 
    15688 -0.01473327 0.02613053 0.99954996 111.78150021 
    15689 Axis 0.01452401 -0.00903105 -0.99985374 
    15690 Axis point 185.18798690 138.59937710 0.00000000 
    15691 Rotation angle (degrees) 122.58541990 
    15692 Shift along axis -112.69123289 
    15693  
    15694 
    15695 > show #!2 models
    15696 
    15697 > fitmap #2 inMap #1
    15698 
    15699 Fit map emdb 3720 in map postprocess_20231221.mrc using 59756 points 
    15700 correlation = 0.7166, correlation about mean = 0.2038, overlap = 49.31 
    15701 steps = 64, shift = 0.0413, angle = 0.00764 degrees 
    15702  
    15703 Position of emdb 3720 (#2) relative to postprocess_20231221.mrc (#1)
    15704 coordinates: 
    15705 Matrix rotation and translation 
    15706 -0.53816911 0.84230315 -0.02999017 166.44451641 
    15707 -0.84270928 -0.53836604 0.00175716 370.29964567 
    15708 -0.01466563 0.02621865 0.99954865 111.76370628 
    15709 Axis 0.01451497 -0.00909329 -0.99985330 
    15710 Axis point 185.17390242 138.60620608 0.00000000 
    15711 Rotation angle (degrees) 122.58112651 
    15712 Shift along axis -112.69861478 
    15713  
    15714 
    15715 > fitmap #2 inMap #1
    15716 
    15717 Fit map emdb 3720 in map postprocess_20231221.mrc using 59756 points 
    15718 correlation = 0.7166, correlation about mean = 0.2039, overlap = 49.31 
    15719 steps = 48, shift = 0.00275, angle = 0.00297 degrees 
    15720  
    15721 Position of emdb 3720 (#2) relative to postprocess_20231221.mrc (#1)
    15722 coordinates: 
    15723 Matrix rotation and translation 
    15724 -0.53816849 0.84230535 -0.02993964 166.43685310 
    15725 -0.84270998 -0.53836497 0.00174583 370.30180649 
    15726 -0.01464793 0.02616999 0.99955019 111.76946153 
    15727 Axis 0.01449280 -0.00907379 -0.99985380 
    15728 Axis point 185.17023970 138.61104222 0.00000000 
    15729 Rotation angle (degrees) 122.58101693 
    15730 Shift along axis -112.70102697 
    15731  
    15732 
    15733 > hide #!2 models
    15734 
    15735 > show #3 models
    15736 
    15737 > show #4 models
    15738 
    15739 > hide #4 models
    15740 
    15741 > show #4 models
    15742 
    15743 > hide #4 models
    15744 
    15745 > show #4 models
    15746 
    15747 > show #5 models
    15748 
    15749 > hide #5 models
    15750 
    15751 > show #5 models
    15752 
    15753 > hide #5 models
    15754 
    15755 > show #5 models
    15756 
    15757 > hide #5 models
    15758 
    15759 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and
    15760 > resources/Processing/COPI-Golph_GT/20240123_Golph3_fitting.cxs"
    15761 
    15762 > show #5 models
    15763 
    15764 > hide #5 models
    15765 
    15766 > show #6 models
    15767 
    15768 > hide #6 models
    15769 
    15770 > show #7 models
    15771 
    15772 > hide #7 models
    15773 
    15774 > show #7 models
    15775 
    15776 > hide #7 models
    15777 
    15778 > show #8 models
    15779 
    15780 > hide #8 models
    15781 
    15782 > show #!9 models
    15783 
    15784 > hide #!9 models
    15785 
    15786 > show #10 models
    15787 
    15788 > hide #10 models
    15789 
    15790 > show #11 models
    15791 
    15792 > hide #11 models
    15793 
    15794 > show #12 models
    15795 
    15796 > hide #12 models
    15797 
    15798 > show #13 models
    15799 
    15800 > hide #13 models
    15801 
    15802 > show #13 models
    15803 
    15804 > hide #13 models
    15805 
    15806 > show #14 models
    15807 
    15808 > hide #14 models
    15809 
    15810 > show #!15 models
    15811 
    15812 > hide #!15 models
    15813 
    15814 > show #!15 models
    15815 
    15816 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and
    15817 > resources/Processing/COPI-Golph_GT/20240124_Golph3_fitting.cxs"
    15818 
    15819 ——— End of log from Wed Jan 24 14:57:19 2024 ———
    15820 
    15821 opened ChimeraX session 
    15822 
    15823 > show #!24 models
    15824 
    15825 > hide #!24 models
    15826 
    15827 > show #!24 models
    15828 
    15829 > hide #!24 models
    15830 
    15831 > hide #!1 models
    15832 
    15833 > show #!1 models
    15834 
    15835 > hide #3 models
    15836 
    15837 > hide #4 models
    15838 
    15839 > show #!2 models
    15840 
    15841 > ui tool show "Fit in Map"
    15842 
    15843 > fitmap #2 inMap #1
    15844 
    15845 Fit map emdb 3720 in map postprocess_20231221.mrc using 59756 points 
    15846 correlation = 0.7165, correlation about mean = 0.2037, overlap = 49.31 
    15847 steps = 40, shift = 0.00989, angle = 0.0208 degrees 
    15848  
    15849 Position of emdb 3720 (#2) relative to postprocess_20231221.mrc (#1)
    15850 coordinates: 
    15851 Matrix rotation and translation 
    15852 -0.53791695 0.84245856 -0.03014864 166.42009772 
    15853 -0.84286797 -0.53811777 0.00169321 370.30672430 
    15854 -0.01479705 0.02632213 0.99954400 111.77203531 
    15855 Axis 0.01461157 -0.00910762 -0.99985177 
    15856 Axis point 185.20412256 138.59647932 0.00000000 
    15857 Rotation angle (degrees) 122.56427261 
    15858 Shift along axis -112.69641943 
    15859  
    15860 
    15861 > volume #1 level 0.01671
    15862 
    15863 > volume #27 level 0.001721
    15864 
    15865 > hide #!15 models
    15866 
    15867 > volume #27 level 0.004894
    15868 
    15869 > hide #!2 models
    15870 
    15871 > show #!2 models
    15872 
    15873 > volume #1 level 0.01454
    15874 
    15875 > volume #27 level 0.004059
    15876 
    15877 > show #3 models
    15878 
    15879 > volume #27 level 0.004059
    15880 
    15881 > show #4 models
    15882 
    15883 > hide #4 models
    15884 
    15885 > show #4 models
    15886 
    15887 > hide #4 models
    15888 
    15889 > show #4 models
    15890 
    15891 > show #5 models
    15892 
    15893 > hide #!2 models
    15894 
    15895 > hide #4 models
    15896 
    15897 > show #4 models
    15898 
    15899 > hide #5 models
    15900 
    15901 > show #5 models
    15902 
    15903 > hide #5 models
    15904 
    15905 > show #5 models
    15906 
    15907 > hide #5 models
    15908 
    15909 > close #5
    15910 
    15911 > hide #!1 models
    15912 
    15913 > show #!1 models
    15914 
    15915 > hide #!1 models
    15916 
    15917 > show #!1 models
    15918 
    15919 > hide #!1 models
    15920 
    15921 > show #!1 models
    15922 
    15923 > hide #!27 models
    15924 
    15925 > volume #27 level 0.003892
    15926 
    15927 > hide #4 models
    15928 
    15929 > show #4 models
    15930 
    15931 > hide #3 models
    15932 
    15933 > show #3 models
    15934 
    15935 > volume #27 level 0.003558
    15936 
    15937 > show #6 models
    15938 
    15939 > show #7 models
    15940 
    15941 > fitmap #3 inMap #1
    15942 
    15943 Fit molecule CopA_F8WHL2.pdb (#3) to map postprocess_20231221.mrc (#1) using
    15944 9810 atoms 
    15945 average map value = 0.001845, steps = 68 
    15946 shifted from previous position = 2.81 
    15947 rotated from previous position = 2.93 degrees 
    15948 atoms outside contour = 9809, contour level = 0.014544 
    15949  
    15950 Position of CopA_F8WHL2.pdb (#3) relative to postprocess_20231221.mrc (#1)
    15951 coordinates: 
    15952 Matrix rotation and translation 
    15953 0.90015953 0.40379294 0.16329137 162.19633365 
    15954 -0.20930428 0.72979075 -0.65084342 244.64037543 
    15955 -0.38197451 0.55168533 0.74144369 239.08869520 
    15956 Axis 0.82604072 0.37455388 -0.42114857 
    15957 Axis point 0.00000000 -323.35348746 438.23786746 
    15958 Rotation angle (degrees) 46.70955347 
    15959 Shift along axis 124.91991652 
    15960  
    15961 
    15962 > select add #3
    15963 
    15964 9810 atoms, 10032 bonds, 1233 residues, 1 model selected 
    15965 
    15966 > ui mousemode right "translate selected models"
    15967 
    15968 > view matrix models
    15969 > #3,0.90081,0.40263,0.16255,273.54,-0.20867,0.72973,-0.65111,361.1,-0.38078,0.55261,0.74137,353.84
    15970 
    15971 > view matrix models
    15972 > #3,0.90081,0.40263,0.16255,270.87,-0.20867,0.72973,-0.65111,363.77,-0.38078,0.55261,0.74137,353.1
    15973 
    15974 > view matrix models
    15975 > #3,0.90081,0.40263,0.16255,268.91,-0.20867,0.72973,-0.65111,361.96,-0.38078,0.55261,0.74137,352.8
    15976 
    15977 > fitmap #3 inMap #1
    15978 
    15979 Fit molecule CopA_F8WHL2.pdb (#3) to map postprocess_20231221.mrc (#1) using
    15980 9810 atoms 
    15981 average map value = 0.001845, steps = 92 
    15982 shifted from previous position = 7.82 
    15983 rotated from previous position = 0.0457 degrees 
    15984 atoms outside contour = 9809, contour level = 0.014544 
    15985  
    15986 Position of CopA_F8WHL2.pdb (#3) relative to postprocess_20231221.mrc (#1)
    15987 coordinates: 
    15988 Matrix rotation and translation 
    15989 0.89988106 0.40450120 0.16307313 162.23059759 
    15990 -0.20991408 0.72944940 -0.65102968 244.65358931 
    15991 -0.38229588 0.55161793 0.74132820 239.10376091 
    15992 Axis 0.82572966 0.37444665 -0.42185334 
    15993 Axis point 0.00000000 -323.24381504 438.40289313 
    15994 Rotation angle (degrees) 46.73848720 
    15995 Shift along axis 124.70161062 
    15996  
    15997 
    15998 > show #!2 models
    15999 
    16000 > hide #!2 models
    16001 
    16002 > view matrix models
    16003 > #3,0.90054,0.40334,0.16233,272.03,-0.20928,0.72939,-0.6513,359.41,-0.3811,0.55254,0.74126,352.35
    16004 
    16005 > fitmap #3 inMap #1
    16006 
    16007 Fit molecule CopA_F8WHL2.pdb (#3) to map postprocess_20231221.mrc (#1) using
    16008 9810 atoms 
    16009 average map value = 0.001846, steps = 52 
    16010 shifted from previous position = 3.78 
    16011 rotated from previous position = 0.132 degrees 
    16012 atoms outside contour = 9809, contour level = 0.014544 
    16013  
    16014 Position of CopA_F8WHL2.pdb (#3) relative to postprocess_20231221.mrc (#1)
    16015 coordinates: 
    16016 Matrix rotation and translation 
    16017 0.90082714 0.40253743 0.16270854 162.19530232 
    16018 -0.20889682 0.73035632 -0.65033972 244.66834799 
    16019 -0.38062130 0.55185437 0.74201359 239.15350985 
    16020 Axis 0.82677669 0.37366050 -0.42049749 
    16021 Axis point -0.00000000 -323.55120767 438.57037778 
    16022 Rotation angle (degrees) 46.63854764 
    16023 Shift along axis 124.95874311 
    16024  
    16025 
    16026 > select subtract #3
    16027 
    16028 Nothing selected 
    16029 
    16030 > show #8 models
    16031 
    16032 > fitmap #8 inMap #1
    16033 
    16034 Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462
    16035 atoms 
    16036 average map value = 0.003728, steps = 156 
    16037 shifted from previous position = 3.77 
    16038 rotated from previous position = 19 degrees 
    16039 atoms outside contour = 1446, contour level = 0.014544 
    16040  
    16041 Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1)
    16042 coordinates: 
    16043 Matrix rotation and translation 
    16044 0.23871334 0.93126401 0.27525132 -92.96159773 
    16045 -0.88635655 0.09315163 0.45353595 105.90758790 
    16046 0.39672159 -0.35223589 0.84766849 472.49244217 
    16047 Axis -0.40451903 -0.06098133 -0.91249418 
    16048 Axis point -102.33853573 189.91429951 0.00000000 
    16049 Rotation angle (degrees) 84.84981260 
    16050 Shift along axis -400.00025351 
    16051  
    16052 
    16053 > select add #8
    16054 
    16055 1462 atoms, 1481 bonds, 179 residues, 1 model selected 
    16056 
    16057 > view matrix models
    16058 > #8,-0.04305,0.99254,0.11405,-54.036,-0.90935,-0.086208,0.407,269.6,0.4138,-0.086188,0.90628,503.09
    16059 
    16060 > fitmap #8 inMap #1
    16061 
    16062 Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462
    16063 atoms 
    16064 average map value = 0.003728, steps = 156 
    16065 shifted from previous position = 2.35 
    16066 rotated from previous position = 19 degrees 
    16067 atoms outside contour = 1446, contour level = 0.014544 
    16068  
    16069 Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1)
    16070 coordinates: 
    16071 Matrix rotation and translation 
    16072 0.23975825 0.93129673 0.27423055 -92.95768275 
    16073 -0.88585521 0.09429203 0.45427918 105.66614145 
    16074 0.39721096 -0.35184574 0.84760134 472.42121763 
    16075 Axis -0.40473531 -0.06174541 -0.91234688 
    16076 Axis point -102.65876100 189.81188561 0.00000000 
    16077 Rotation angle (degrees) 84.78888270 
    16078 Shift along axis -399.91316667 
    16079  
    16080 
    16081 > color #1 #c0c0c09a models
    16082 
    16083 > color #1 #c0c0c0a6 models
    16084 
    16085 > hide #!27 models
    16086 
    16087 > volume #27 level 0.006063
    16088 
    16089 > hide #!27 models
    16090 
    16091 > volume #1 level 0.004859
    16092 
    16093 > volume #1 level 0.00369
    16094 
    16095 > select subtract #8
    16096 
    16097 Nothing selected 
    16098 
    16099 > show #!9 models
    16100 
    16101 > hide #!9 models
    16102 
    16103 > show #!9 models
    16104 
    16105 > fitmap #9 inMap #1
    16106 
    16107 Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673
    16108 atoms 
    16109 average map value = 0.003524, steps = 64 
    16110 shifted from previous position = 0.586 
    16111 rotated from previous position = 0.992 degrees 
    16112 atoms outside contour = 4569, contour level = 0.0036898 
    16113  
    16114 Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1)
    16115 coordinates: 
    16116 Matrix rotation and translation 
    16117 0.48946039 -0.51119098 -0.70647881 223.52094052 
    16118 0.54881092 -0.44901255 0.70512006 282.30283630 
    16119 -0.67766887 -0.73285162 0.06077334 258.73062006 
    16120 Axis -0.80483252 -0.01612492 0.59328290 
    16121 Axis point 0.00000000 245.01292905 103.84475236 
    16122 Rotation angle (degrees) 116.70451631 
    16123 Shift along axis -30.94857928 
    16124  
    16125 
    16126 > fitmap #9 inMap #1
    16127 
    16128 Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673
    16129 atoms 
    16130 average map value = 0.003524, steps = 48 
    16131 shifted from previous position = 0.00538 
    16132 rotated from previous position = 0.0139 degrees 
    16133 atoms outside contour = 4570, contour level = 0.0036898 
    16134  
    16135 Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1)
    16136 coordinates: 
    16137 Matrix rotation and translation 
    16138 0.48927229 -0.51133667 -0.70650367 223.52773984 
    16139 0.54886344 -0.44901336 0.70507867 282.30389544 
    16140 -0.67776216 -0.73274949 0.06096421 258.73180389 
    16141 Axis -0.80475175 -0.01608661 0.59339350 
    16142 Axis point 0.00000000 245.01905582 103.85933152 
    16143 Rotation angle (degrees) 116.70445294 
    16144 Shift along axis -30.89588036 
    16145  
    16146 
    16147 > fitmap #9 inMap #1
    16148 
    16149 Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673
    16150 atoms 
    16151 average map value = 0.003524, steps = 48 
    16152 shifted from previous position = 0.0168 
    16153 rotated from previous position = 0.0102 degrees 
    16154 atoms outside contour = 4571, contour level = 0.0036898 
    16155  
    16156 Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1)
    16157 coordinates: 
    16158 Matrix rotation and translation 
    16159 0.48915096 -0.51134415 -0.70658227 223.52965885 
    16160 0.54885208 -0.44914905 0.70500108 282.29080176 
    16161 -0.67785893 -0.73266110 0.06095061 258.73832985 
    16162 Axis -0.80472018 -0.01607766 0.59343656 
    16163 Axis point 0.00000000 244.99753955 103.89134370 
    16164 Rotation angle (degrees) 116.71313164 
    16165 Shift along axis -30.87261952 
    16166  
    16167 
    16168 > show #10 models
    16169 
    16170 > fitmap #10 inMap #1
    16171 
    16172 Fit molecule CopZ2_Q9CTG7.pdb (#10) to map postprocess_20231221.mrc (#1) using
    16173 1463 atoms 
    16174 average map value = 0.003943, steps = 48 
    16175 shifted from previous position = 0.417 
    16176 rotated from previous position = 1.46 degrees 
    16177 atoms outside contour = 792, contour level = 0.0036898 
    16178  
    16179 Position of CopZ2_Q9CTG7.pdb (#10) relative to postprocess_20231221.mrc (#1)
    16180 coordinates: 
    16181 Matrix rotation and translation 
    16182 -0.81864305 0.29541521 -0.49249716 229.58444037 
    16183 0.42688194 0.88667169 -0.17772211 242.05157821 
    16184 0.38418147 -0.35572911 -0.85197502 217.24514022 
    16185 Axis -0.19687193 -0.96958778 0.14539939 
    16186 Axis point 59.00002771 0.00000000 149.03806421 
    16187 Rotation angle (degrees) 153.12225239 
    16188 Shift along axis -248.30167204 
    16189  
    16190 
    16191 > fitmap #10 inMap #1
    16192 
    16193 Fit molecule CopZ2_Q9CTG7.pdb (#10) to map postprocess_20231221.mrc (#1) using
    16194 1463 atoms 
    16195 average map value = 0.003943, steps = 28 
    16196 shifted from previous position = 0.0492 
    16197 rotated from previous position = 0.0271 degrees 
    16198 atoms outside contour = 792, contour level = 0.0036898 
    16199  
    16200 Position of CopZ2_Q9CTG7.pdb (#10) relative to postprocess_20231221.mrc (#1)
    16201 coordinates: 
    16202 Matrix rotation and translation 
    16203 -0.81849776 0.29524030 -0.49284341 229.56017056 
    16204 0.42694330 0.88660030 -0.17793076 242.03285382 
    16205 0.38442278 -0.35605212 -0.85173121 217.28362866 
    16206 Axis -0.19686199 -0.96956572 0.14555984 
    16207 Axis point 58.95712397 0.00000000 149.09318624 
    16208 Rotation angle (degrees) 153.10212696 
    16209 Shift along axis -248.23066084 
    16210  
    16211 
    16212 > hide #10 models
    16213 
    16214 > show #11 models
    16215 
    16216 > fitmap #11 inMap #1
    16217 
    16218 Fit molecule CopZ1_P61924.pdb (#11) to map postprocess_20231221.mrc (#1) using
    16219 1420 atoms 
    16220 average map value = 0.003933, steps = 44 
    16221 shifted from previous position = 0.312 
    16222 rotated from previous position = 1.46 degrees 
    16223 atoms outside contour = 727, contour level = 0.0036898 
    16224  
    16225 Position of CopZ1_P61924.pdb (#11) relative to postprocess_20231221.mrc (#1)
    16226 coordinates: 
    16227 Matrix rotation and translation 
    16228 0.16479913 -0.93983802 -0.29924197 230.49736056 
    16229 -0.38664204 0.21755152 -0.89620270 241.46224490 
    16230 0.90738591 0.26339295 -0.32752859 218.19778081 
    16231 Axis 0.65790199 -0.68458595 0.31385831 
    16232 Axis point 143.42213466 -0.00000000 249.43293093 
    16233 Rotation angle (degrees) 118.20248350 
    16234 Shift along axis 54.82620005 
    16235  
    16236 
    16237 > fitmap #11 inMap #1
    16238 
    16239 Fit molecule CopZ1_P61924.pdb (#11) to map postprocess_20231221.mrc (#1) using
    16240 1420 atoms 
    16241 average map value = 0.003933, steps = 40 
    16242 shifted from previous position = 0.00516 
    16243 rotated from previous position = 0.0582 degrees 
    16244 atoms outside contour = 729, contour level = 0.0036898 
    16245  
    16246 Position of CopZ1_P61924.pdb (#11) relative to postprocess_20231221.mrc (#1)
    16247 coordinates: 
    16248 Matrix rotation and translation 
    16249 0.16557357 -0.93960238 -0.29955428 230.49711147 
    16250 -0.38616785 0.21772091 -0.89636600 241.45978242 
    16251 0.90744685 0.26409275 -0.32679540 218.19963395 
    16252 Axis 0.65805631 -0.68444890 0.31383372 
    16253 Axis point 143.36639957 0.00000000 249.52617996 
    16254 Rotation angle (degrees) 118.14798262 
    16255 Shift along axis 54.89159910 
    16256  
    16257 
    16258 > show #12 models
    16259 
    16260 > hide #12 models
    16261 
    16262 > show #12 models
    16263 
    16264 > hide #12 models
    16265 
    16266 > show #12 models
    16267 
    16268 > hide #12 models
    16269 
    16270 > show #12 models
    16271 
    16272 > hide #12 models
    16273 
    16274 > show #12 models
    16275 
    16276 > close #12
    16277 
    16278 > show #13 models
    16279 
    16280 > fitmap #7 inMap #1
    16281 
    16282 Fit molecule hArf1_P84078 (#7) to map postprocess_20231221.mrc (#1) using 1457
    16283 atoms 
    16284 average map value = 0.003766, steps = 56 
    16285 shifted from previous position = 0.864 
    16286 rotated from previous position = 4.14 degrees 
    16287 atoms outside contour = 770, contour level = 0.0036898 
    16288  
    16289 Position of hArf1_P84078 (#7) relative to postprocess_20231221.mrc (#1)
    16290 coordinates: 
    16291 Matrix rotation and translation 
    16292 -0.84483130 -0.49393057 0.20565176 243.02165057 
    16293 -0.47593422 0.51817889 -0.71061750 195.90564270 
    16294 0.24443130 -0.69822863 -0.67285221 220.58765330 
    16295 Axis 0.27833451 -0.87124025 0.40431464 
    16296 Axis point 151.35909954 0.00000000 157.32737010 
    16297 Rotation angle (degrees) 178.72475613 
    16298 Shift along axis -13.85275083 
    16299  
    16300 
    16301 > fitmap #6 inMap #1
    16302 
    16303 Fit molecule hArf1_P84078 (#6) to map postprocess_20231221.mrc (#1) using 1457
    16304 atoms 
    16305 average map value = 0.002587, steps = 44 
    16306 shifted from previous position = 2.4 
    16307 rotated from previous position = 3.14 degrees 
    16308 atoms outside contour = 1383, contour level = 0.0036898 
    16309  
    16310 Position of hArf1_P84078 (#6) relative to postprocess_20231221.mrc (#1)
    16311 coordinates: 
    16312 Matrix rotation and translation 
    16313 0.15746228 0.02392526 0.98723513 126.72965474 
    16314 -0.68671732 -0.71576648 0.12687654 200.57796574 
    16315 0.70966537 -0.69792974 -0.09627633 178.39429805 
    16316 Axis -0.73410771 0.24704722 -0.63249785 
    16317 Axis point 0.00000000 138.26513657 -15.48328042 
    16318 Rotation angle (degrees) 145.82138083 
    16319 Shift along axis -156.31499806 
    16320  
    16321 
    16322 > fitmap #13 inMap #1
    16323 
    16324 Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess_20231221.mrc (#1)
    16325 using 2367 atoms 
    16326 average map value = 0.0031, steps = 64 
    16327 shifted from previous position = 0.356 
    16328 rotated from previous position = 1.5 degrees 
    16329 atoms outside contour = 1694, contour level = 0.0036898 
    16330  
    16331 Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess_20231221.mrc (#1)
    16332 coordinates: 
    16333 Matrix rotation and translation 
    16334 0.66106910 -0.23543049 0.71243254 198.02566618 
    16335 -0.68861463 -0.56745520 0.45144710 233.21553124 
    16336 0.29798913 -0.78902920 -0.53724798 191.32656018 
    16337 Axis -0.89618921 0.29941701 -0.32740548 
    16338 Axis point 0.00000000 180.09147202 -4.24254670 
    16339 Rotation angle (degrees) 136.20470288 
    16340 Shift along axis -170.28113246 
    16341  
    16342 
    16343 > fitmap #13 inMap #1
    16344 
    16345 Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess_20231221.mrc (#1)
    16346 using 2367 atoms 
    16347 average map value = 0.0031, steps = 48 
    16348 shifted from previous position = 0.0608 
    16349 rotated from previous position = 0.0836 degrees 
    16350 atoms outside contour = 1695, contour level = 0.0036898 
    16351  
    16352 Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess_20231221.mrc (#1)
    16353 coordinates: 
    16354 Matrix rotation and translation 
    16355 0.66033234 -0.23665806 0.71270903 198.05899585 
    16356 -0.68948127 -0.56717145 0.45047989 233.25398840 
    16357 0.29761852 -0.78886596 -0.53769295 191.34695105 
    16358 Axis -0.89597915 0.30008770 -0.32736637 
    16359 Axis point 0.00000000 180.19607325 -4.21984410 
    16360 Rotation angle (degrees) 136.24188641 
    16361 Shift along axis -170.10063410 
    16362  
    16363 
    16364 > fitmap #13 inMap #1
    16365 
    16366 Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess_20231221.mrc (#1)
    16367 using 2367 atoms 
    16368 average map value = 0.0031, steps = 48 
    16369 shifted from previous position = 0.0614 
    16370 rotated from previous position = 0.0877 degrees 
    16371 atoms outside contour = 1694, contour level = 0.0036898 
    16372  
    16373 Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess_20231221.mrc (#1)
    16374 coordinates: 
    16375 Matrix rotation and translation 
    16376 0.66111688 -0.23537988 0.71240493 198.02527108 
    16377 -0.68855172 -0.56750955 0.45147474 233.21545821 
    16378 0.29802854 -0.78900521 -0.53726136 191.32659705 
    16379 Axis -0.89620533 0.29937310 -0.32740152 
    16380 Axis point 0.00000000 180.08399595 -4.23802996 
    16381 Rotation angle (degrees) 136.20552929 
    16382 Shift along axis -170.29348570 
    16383  
    16384 
    16385 > fitmap #13 inMap #1
    16386 
    16387 Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess_20231221.mrc (#1)
    16388 using 2367 atoms 
    16389 average map value = 0.0031, steps = 48 
    16390 shifted from previous position = 0.0592 
    16391 rotated from previous position = 0.0908 degrees 
    16392 atoms outside contour = 1696, contour level = 0.0036898 
    16393  
    16394 Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess_20231221.mrc (#1)
    16395 coordinates: 
    16396 Matrix rotation and translation 
    16397 0.66032840 -0.23672237 0.71269132 198.05842868 
    16398 -0.68951672 -0.56712470 0.45048447 233.25039753 
    16399 0.29754511 -0.78888028 -0.53771258 191.34783844 
    16400 Axis -0.89597713 0.30012272 -0.32733979 
    16401 Axis point 0.00000000 180.20108391 -4.21779697 
    16402 Rotation angle (degrees) 136.24092631 
    16403 Shift along axis -170.08783960 
    16404  
    16405 
    16406 > fitmap #13 inMap #1
    16407 
    16408 Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess_20231221.mrc (#1)
    16409 using 2367 atoms 
    16410 average map value = 0.0031, steps = 44 
    16411 shifted from previous position = 0.075 
    16412 rotated from previous position = 0.112 degrees 
    16413 atoms outside contour = 1694, contour level = 0.0036898 
    16414  
    16415 Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess_20231221.mrc (#1)
    16416 coordinates: 
    16417 Matrix rotation and translation 
    16418 0.66127138 -0.23504648 0.71237161 198.01452577 
    16419 -0.68840739 -0.56742096 0.45180606 233.20554172 
    16420 0.29801916 -0.78916830 -0.53702698 191.32490872 
    16421 Axis -0.89624017 0.29924817 -0.32742035 
    16422 Axis point 0.00000000 180.07264602 -4.26204900 
    16423 Rotation angle (degrees) 136.18576759 
    16424 Shift along axis -170.32590854 
    16425  
    16426 
    16427 > fitmap #13 inMap #1
    16428 
    16429 Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess_20231221.mrc (#1)
    16430 using 2367 atoms 
    16431 average map value = 0.0031, steps = 36 
    16432 shifted from previous position = 0.0635 
    16433 rotated from previous position = 0.105 degrees 
    16434 atoms outside contour = 1695, contour level = 0.0036898 
    16435  
    16436 Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess_20231221.mrc (#1)
    16437 coordinates: 
    16438 Matrix rotation and translation 
    16439 0.66042804 -0.23664749 0.71262386 198.05230461 
    16440 -0.68940567 -0.56720478 0.45055361 233.24248648 
    16441 0.29758128 -0.78884517 -0.53774407 191.34290893 
    16442 Axis -0.89600980 0.30005049 -0.32731658 
    16443 Axis point 0.00000000 180.18416582 -4.20856795 
    16444 Rotation angle (degrees) 136.24142035 
    16445 Shift along axis -170.10198828 
    16446  
    16447 
    16448 > fitmap #13 inMap #1
    16449 
    16450 Fit molecule Golph3_ Q9CRA5.pdb (#13) to map postprocess_20231221.mrc (#1)
    16451 using 2367 atoms 
    16452 average map value = 0.0031, steps = 44 
    16453 shifted from previous position = 0.00651 
    16454 rotated from previous position = 0.0146 degrees 
    16455 atoms outside contour = 1696, contour level = 0.0036898 
    16456  
    16457 Position of Golph3_ Q9CRA5.pdb (#13) relative to postprocess_20231221.mrc (#1)
    16458 coordinates: 
    16459 Matrix rotation and translation 
    16460 0.66047830 -0.23642569 0.71265089 198.04833551 
    16461 -0.68934139 -0.56715067 0.45072005 233.23896951 
    16462 0.29761863 -0.78895057 -0.53756873 191.34102815 
    16463 Axis -0.89601715 0.29997970 -0.32736134 
    16464 Axis point 0.00000000 180.17843945 -4.22962225 
    16465 Rotation angle (degrees) 136.22983542 
    16466 Shift along axis -170.12540314 
    16467  
    16468 
    16469 > show #14 models
    16470 
    16471 > fitmap #14 inMap #1
    16472 
    16473 Fit molecule CopBprime_O55029.pdb (#14) to map postprocess_20231221.mrc (#1)
    16474 using 7214 atoms 
    16475 average map value = 0.00312, steps = 44 
    16476 shifted from previous position = 0.476 
    16477 rotated from previous position = 0.838 degrees 
    16478 atoms outside contour = 4439, contour level = 0.0036898 
    16479  
    16480 Position of CopBprime_O55029.pdb (#14) relative to postprocess_20231221.mrc
    16481 (#1) coordinates: 
    16482 Matrix rotation and translation 
    16483 -0.16270681 -0.17514830 -0.97100441 188.48036639 
    16484 -0.01393129 -0.98361241 0.17975692 177.43794261 
    16485 -0.98657610 0.04277502 0.15760039 238.55464879 
    16486 Axis -0.64575721 0.07340777 0.76000588 
    16487 Axis point 189.56540435 85.43326979 0.00000000 
    16488 Rotation angle (degrees) 173.91158591 
    16489 Shift along axis 72.61570301 
    16490  
    16491 
    16492 > fitmap #14 inMap #1
    16493 
    16494 Fit molecule CopBprime_O55029.pdb (#14) to map postprocess_20231221.mrc (#1)
    16495 using 7214 atoms 
    16496 average map value = 0.00312, steps = 48 
    16497 shifted from previous position = 0.0351 
    16498 rotated from previous position = 0.00705 degrees 
    16499 atoms outside contour = 4437, contour level = 0.0036898 
    16500  
    16501 Position of CopBprime_O55029.pdb (#14) relative to postprocess_20231221.mrc
    16502 (#1) coordinates: 
    16503 Matrix rotation and translation 
    16504 -0.16280622 -0.17508181 -0.97099974 188.50106463 
    16505 -0.01396996 -0.98362224 0.17970011 177.41019990 
    16506 -0.98655916 0.04282112 0.15769393 238.55155391 
    16507 Axis -0.64572039 0.07340086 0.76003783 
    16508 Axis point 189.56979851 85.41555075 0.00000000 
    16509 Rotation angle (degrees) 173.91582886 
    16510 Shift along axis 72.61128521 
    16511  
    16512 
    16513 > show #10 models
    16514 
    16515 > hide #10 models
    16516 
    16517 > rename #6 #5
    16518 
    16519 No name or id option specified for renaming 
    16520 
    16521 > rename #6 id #5
    16522 
    16523 > rename #7 id #6
    16524 
    16525 > rename #14 id #7
    16526 
    16527 > rename #10 id #12
    16528 
    16529 > rename #11 id #10
    16530 
    16531 > rename #13 id #11
    16532 
    16533 > show #12 models
    16534 
    16535 > hide #12 models
    16536 
    16537 > show #12 models
    16538 
    16539 > show #!2 models
    16540 
    16541 > hide #!2 models
    16542 
    16543 > show #!2 models
    16544 
    16545 > fitmap #2 inMap #1
    16546 
    16547 Fit map emdb 3720 in map postprocess_20231221.mrc using 59756 points 
    16548 correlation = 0.7167, correlation about mean = 0.2038, overlap = 49.31 
    16549 steps = 60, shift = 0.05, angle = 0.016 degrees 
    16550  
    16551 Position of emdb 3720 (#2) relative to postprocess_20231221.mrc (#1)
    16552 coordinates: 
    16553 Matrix rotation and translation 
    16554 -0.53806318 0.84237008 -0.03001127 166.46851211 
    16555 -0.84277337 -0.53826641 0.00152601 370.30102779 
    16556 -0.01486859 0.02611378 0.99954840 111.80242990 
    16557 Axis 0.01458877 -0.00898467 -0.99985321 
    16558 Axis point 185.20870656 138.59733883 0.00000000 
    16559 Rotation angle (degrees) 122.57414654 
    16560 Shift along axis -112.68447858 
    16561  
    16562 
    16563 > fitmap #2 inMap #1
    16564 
    16565 Fit map emdb 3720 in map postprocess_20231221.mrc using 59756 points 
    16566 correlation = 0.7166, correlation about mean = 0.2037, overlap = 49.32 
    16567 steps = 48, shift = 0.0158, angle = 0.0192 degrees 
    16568  
    16569 Position of emdb 3720 (#2) relative to postprocess_20231221.mrc (#1)
    16570 coordinates: 
    16571 Matrix rotation and translation 
    16572 -0.53783250 0.84252302 -0.02985225 166.40464852 
    16573 -0.84292358 -0.53803088 0.00161764 370.29565125 
    16574 -0.01469853 0.02603319 0.99955302 111.79406715 
    16575 Axis 0.01448399 -0.00898962 -0.99985469 
    16576 Axis point 185.20258353 138.59990210 0.00000000 
    16577 Rotation angle (degrees) 122.55814219 
    16578 Shift along axis -112.69643449 
    16579  
    16580 
    16581 > hide #!2 models
    16582 
    16583 > show #!15 models
    16584 
    16585 > hide #!15 models
    16586 
    16587 > show #!15 models
    16588 
    16589 > hide #!15 models
    16590 
    16591 > show #!16 models
    16592 
    16593 > hide #!16 models
    16594 
    16595 > show #!17 models
    16596 
    16597 > hide #!17 models
    16598 
    16599 > show #!18 models
    16600 
    16601 > hide #!18 models
    16602 
    16603 > show #!19 models
    16604 
    16605 > hide #!19 models
    16606 
    16607 > show #!20 models
    16608 
    16609 > hide #!20 models
    16610 
    16611 > show #!21 models
    16612 
    16613 > hide #!21 models
    16614 
    16615 > rename #15 id #13
    16616 
    16617 > rename #16 id #14
    16618 
    16619 > rename #17 id #15
    16620 
    16621 > rename #18 id #16
    16622 
    16623 > rename #19 id #17
    16624 
    16625 > show #!13 models
    16626 
    16627 > hide #!13 models
    16628 
    16629 > show #!14 models
    16630 
    16631 > hide #!14 models
    16632 
    16633 > show #!15 models
    16634 
    16635 > hide #!15 models
    16636 
    16637 > show #!16 models
    16638 
    16639 > hide #!16 models
    16640 
    16641 > show #!17 models
    16642 
    16643 > hide #!17 models
    16644 
    16645 > rename #20 id #18
    16646 
    16647 > rename #21 id #19
    16648 
    16649 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    16650 > resources/Processing/Reference structures/emd_2988_2015_linkage3.map"
    16651 
    16652 Opened emd_2988_2015_linkage3.map as #20, grid size 200,200,200, pixel 2.02,
    16653 shown at level 3.38, step 1, values float32 
    16654 
    16655 > color #20 #fffb00ff models
    16656 
    16657 > color #20 #fffeb6ff models
    16658 
    16659 > hide #!20 models
    16660 
    16661 > color #24 #b9ffffff models
    16662 
    16663 > color #23 #fffeb6ff models
    16664 
    16665 > rename #22 id #21
    16666 
    16667 > rename #23 id #22
    16668 
    16669 > rename #24 id #23
    16670 
    16671 > rename #27 id #24
    16672 
    16673 > show #!24 models
    16674 
    16675 > hide #!24 models
    16676 
    16677 > show #!24 models
    16678 
    16679 > show #!25 models
    16680 
    16681 > hide #!25 models
    16682 
    16683 > show #!25 models
    16684 
    16685 > select add #25
    16686 
    16687 2 models selected 
    16688 
    16689 > view matrix models
    16690 > #25,0.30125,-0.20502,-0.93124,395.8,0.88616,0.4208,0.19403,158.36,0.35209,-0.88368,0.30844,247.86
    16691 
    16692 > view matrix models
    16693 > #25,0.30125,-0.20502,-0.93124,409.18,0.88616,0.4208,0.19403,140.07,0.35209,-0.88368,0.30844,349.72
    16694 
    16695 > ui mousemode right "rotate selected models"
    16696 
    16697 > view matrix models
    16698 > #25,0.67645,-0.68438,0.27211,276.2,0.719,0.6937,-0.042662,155.46,-0.15957,0.22451,0.96132,195.14
    16699 
    16700 > view matrix models
    16701 > #25,0.90086,-0.29707,-0.31655,276.98,0.27566,0.95477,-0.11151,182.83,0.33536,0.013191,0.942,166.85
    16702 
    16703 > view matrix models
    16704 > #25,0.051634,0.99551,-0.079348,189.57,-0.99444,0.043954,-0.095665,432.86,-0.091748,0.083846,0.99225,200.46
    16705 
    16706 > view matrix models
    16707 > #25,0.16593,0.98421,-0.061601,175.83,-0.9838,0.16092,-0.078982,415.66,-0.067822,0.073708,0.99497,198.63
    16708 
    16709 > ui mousemode right "translate selected models"
    16710 
    16711 > view matrix models
    16712 > #25,0.16593,0.98421,-0.061601,175.86,-0.9838,0.16092,-0.078982,412.23,-0.067822,0.073708,0.99497,198.86
    16713 
    16714 > fitmap #25 inMap #1
    16715 
    16716 Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 65799
    16717 points 
    16718 correlation = 0.701, correlation about mean = 0.05315, overlap = 29.32 
    16719 steps = 192, shift = 9.35, angle = 11.1 degrees 
    16720  
    16721 Position of emd_3720_2017_leaf.map (#25) relative to postprocess_20231221.mrc
    16722 (#1) coordinates: 
    16723 Matrix rotation and translation 
    16724 0.11163403 0.96487176 -0.23782420 100.11400997 
    16725 -0.99372584 0.11003505 -0.02003119 302.54909941 
    16726 0.00684146 0.23856822 0.97110165 55.58840087 
    16727 Axis 0.12990453 -0.12290507 -0.98387965 
    16728 Axis point 217.66156287 86.02522080 0.00000000 
    16729 Rotation angle (degrees) 84.46893874 
    16730 Shift along axis -78.87185003 
    16731  
    16732 
    16733 > hide #!24 models
    16734 
    16735 > hide #3 models
    16736 
    16737 > hide #4 models
    16738 
    16739 > hide #5 models
    16740 
    16741 > hide #6 models
    16742 
    16743 > hide #7 models
    16744 
    16745 > hide #8 models
    16746 
    16747 > hide #!9 models
    16748 
    16749 > hide #10 models
    16750 
    16751 > hide #11 models
    16752 
    16753 > hide #12 models
    16754 
    16755 > show #!2 models
    16756 
    16757 > hide #!1 models
    16758 
    16759 > ui mousemode right "rotate selected models"
    16760 
    16761 > view matrix models
    16762 > #25,-0.63698,0.76915,-0.051509,297.36,-0.7325,-0.62474,-0.27045,503.5,-0.2402,-0.13454,0.96135,241.27
    16763 
    16764 > ui mousemode right "translate selected models"
    16765 
    16766 > view matrix models
    16767 > #25,-0.63698,0.76915,-0.051509,313.09,-0.7325,-0.62474,-0.27045,513.45,-0.2402,-0.13454,0.96135,244.01
    16768 
    16769 > fitmap #25 inMap #1
    16770 
    16771 Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 65799
    16772 points 
    16773 correlation = 0.7202, correlation about mean = 0.04691, overlap = 31.12 
    16774 steps = 68, shift = 2.64, angle = 2.35 degrees 
    16775  
    16776 Position of emd_3720_2017_leaf.map (#25) relative to postprocess_20231221.mrc
    16777 (#1) coordinates: 
    16778 Matrix rotation and translation 
    16779 -0.62028881 0.78213998 -0.05915118 199.52960692 
    16780 -0.75199071 -0.61443165 -0.23871268 400.80293035 
    16781 -0.22305108 -0.10358966 0.96928706 124.65272239 
    16782 Axis 0.08724556 0.10582608 -0.99054987 
    16783 Axis point 202.82248950 157.96163882 0.00000000 
    16784 Rotation angle (degrees) 129.25084103 
    16785 Shift along axis -63.65126554 
    16786  
    16787 
    16788 > fitmap #25 inMap #1
    16789 
    16790 Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 65799
    16791 points 
    16792 correlation = 0.7202, correlation about mean = 0.04691, overlap = 31.12 
    16793 steps = 60, shift = 0.00106, angle = 0.00153 degrees 
    16794  
    16795 Position of emd_3720_2017_leaf.map (#25) relative to postprocess_20231221.mrc
    16796 (#1) coordinates: 
    16797 Matrix rotation and translation 
    16798 -0.62027380 0.78215072 -0.05916661 199.52866252 
    16799 -0.75200210 -0.61442174 -0.23870231 400.80080185 
    16800 -0.22305443 -0.10356737 0.96928868 124.65051550 
    16801 Axis 0.08725203 0.10581679 -0.99055030 
    16802 Axis point 202.82380680 157.95891904 0.00000000 
    16803 Rotation angle (degrees) 129.24985933 
    16804 Shift along axis -63.65186843 
    16805  
    16806 
    16807 > view matrix models
    16808 > #25,-0.61957,0.78261,-0.060441,305.75,-0.75221,-0.61398,-0.23919,515.13,-0.2243,-0.10273,0.96909,279.3
    16809 
    16810 > fitmap #25 inMap #1
    16811 
    16812 Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 65799
    16813 points 
    16814 correlation = 0.7136, correlation about mean = 0.2086, overlap = 51.77 
    16815 steps = 116, shift = 15, angle = 15.4 degrees 
    16816  
    16817 Position of emd_3720_2017_leaf.map (#25) relative to postprocess_20231221.mrc
    16818 (#1) coordinates: 
    16819 Matrix rotation and translation 
    16820 -0.53778248 0.84255214 -0.02993196 166.42872750 
    16821 -0.84295720 -0.53797769 0.00178284 370.26748854 
    16822 -0.01460059 0.02619014 0.99955036 111.74859963 
    16823 Axis 0.01447855 -0.00909466 -0.99985382 
    16824 Axis point 185.21029499 138.57045048 0.00000000 
    16825 Rotation angle (degrees) 122.55472415 
    16826 Shift along axis -112.69007224 
    16827  
    16828 
    16829 > select subtract #25
    16830 
    16831 Nothing selected 
    16832 
    16833 > hide #!25 models
    16834 
    16835 > show #!26 models
    16836 
    16837 > select add #26
    16838 
    16839 2 models selected 
    16840 
    16841 > view matrix models
    16842 > #26,-0.75258,0.45055,-0.48023,398.01,-0.63811,-0.67905,0.36292,440.39,-0.16258,0.57957,0.79854,206.22
    16843 
    16844 > view matrix models
    16845 > #26,-0.75258,0.45055,-0.48023,400.22,-0.63811,-0.67905,0.36292,430.28,-0.16258,0.57957,0.79854,190.52
    16846 
    16847 > fitmap #26 inMap #1
    16848 
    16849 Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 93502
    16850 points 
    16851 correlation = 0.6814, correlation about mean = 0.03275, overlap = 39.46 
    16852 steps = 124, shift = 28.5, angle = 15.4 degrees 
    16853  
    16854 Position of emd_3720_2017_leaf.map (#26) relative to postprocess_20231221.mrc
    16855 (#1) coordinates: 
    16856 Matrix rotation and translation 
    16857 -0.80048790 0.52354068 -0.29176061 280.40193069 
    16858 -0.58964709 -0.77515357 0.22683301 354.89939910 
    16859 -0.10740297 0.35361289 0.92920530 65.62061675 
    16860 Axis 0.11165601 -0.16236519 -0.98039302 
    16861 Axis point 197.96082438 125.87878286 0.00000000 
    16862 Rotation angle (degrees) 145.40824645 
    16863 Shift along axis -90.64874260 
    16864  
    16865 
    16866 > color #26 #942192ff models
    16867 
    16868 > ui mousemode right "rotate selected models"
    16869 
    16870 > view matrix models
    16871 > #26,-0.3094,0.90104,-0.30396,293.42,-0.95088,-0.28979,0.10884,463.8,0.0099835,0.32271,0.94645,166.13
    16872 
    16873 > ui mousemode right "translate selected models"
    16874 
    16875 > view matrix models
    16876 > #26,-0.3094,0.90104,-0.30396,284.24,-0.95088,-0.28979,0.10884,440.35,0.0099835,0.32271,0.94645,163.75
    16877 
    16878 > view matrix models
    16879 > #26,-0.3094,0.90104,-0.30396,272,-0.95088,-0.28979,0.10884,447.96,0.0099835,0.32271,0.94645,177.38
    16880 
    16881 > fitmap #26 inMap #1
    16882 
    16883 Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 93502
    16884 points 
    16885 correlation = 0.6077, correlation about mean = 0.05609, overlap = 37.22 
    16886 steps = 120, shift = 6.67, angle = 4.48 degrees 
    16887  
    16888 Position of emd_3720_2017_leaf.map (#26) relative to postprocess_20231221.mrc
    16889 (#1) coordinates: 
    16890 Matrix rotation and translation 
    16891 -0.36623360 0.88241853 -0.29531417 171.46423215 
    16892 -0.92983541 -0.35924163 0.07969649 341.21826856 
    16893 -0.03576348 0.30378111 0.95207036 68.32737423 
    16894 Axis 0.12149399 -0.14072295 -0.98256616 
    16895 Axis point 200.93863242 103.81171509 0.00000000 
    16896 Rotation angle (degrees) 112.74947034 
    16897 Shift along axis -94.32153342 
    16898  
    16899 
    16900 > ui mousemode right "rotate selected models"
    16901 
    16902 > view matrix models
    16903 > #26,0.5533,-0.49401,-0.67068,388.41,0.45321,0.85409,-0.25521,191.27,0.69889,-0.16275,0.69646,183.19
    16904 
    16905 > view matrix models
    16906 > #26,0.047803,-0.54747,-0.83546,471.47,0.78383,0.53901,-0.30836,197.77,0.61914,-0.64012,0.45489,277.77
    16907 
    16908 > view matrix models
    16909 > #26,-0.59372,0.26561,-0.75957,437.99,0.11032,-0.90817,-0.40381,458.19,-0.79708,-0.32354,0.50989,393.77
    16910 
    16911 > view matrix models
    16912 > #26,-0.86755,0.4472,0.21766,331.93,-0.045965,-0.50786,0.86021,278.84,0.49523,0.73627,0.46115,126.6
    16913 
    16914 > view matrix models
    16915 > #26,-0.50461,0.3957,-0.76733,413.27,-0.62236,-0.78271,0.0056417,477.81,-0.59836,0.4804,0.64123,259.72
    16916 
    16917 > view matrix models
    16918 > #26,-0.018439,0.87805,-0.47821,266.48,-0.99131,-0.07836,-0.10565,448.55,-0.13024,0.47211,0.87187,180.49
    16919 
    16920 > fitmap #26 inMap #1
    16921 
    16922 Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 93502
    16923 points 
    16924 correlation = 0.643, correlation about mean = 0.05332, overlap = 36.5 
    16925 steps = 128, shift = 10, angle = 3.19 degrees 
    16926  
    16927 Position of emd_3720_2017_leaf.map (#26) relative to postprocess_20231221.mrc
    16928 (#1) coordinates: 
    16929 Matrix rotation and translation 
    16930 -0.04984739 0.89805451 -0.43705068 146.96444675 
    16931 -0.99215656 -0.09475011 -0.08153366 331.54326175 
    16932 -0.11463228 0.42955846 0.89573374 60.08760303 
    16933 Axis 0.25754769 -0.16247191 -0.95250830 
    16934 Axis point 229.66777164 83.83264256 0.00000000 
    16935 Rotation angle (degrees) 97.14794883 
    16936 Shift along axis -73.25005349 
    16937  
    16938 
    16939 > view matrix models
    16940 > #26,-0.072354,0.97321,0.21824,175.47,-0.95136,-0.13304,0.27786,401.14,0.29945,-0.18752,0.9355,194.35
    16941 
    16942 > ui mousemode right "translate selected models"
    16943 
    16944 > view matrix models
    16945 > #26,-0.072354,0.97321,0.21824,181.5,-0.95136,-0.13304,0.27786,422.24,0.29945,-0.18752,0.9355,225.11
    16946 
    16947 > ui mousemode right "rotate selected models"
    16948 
    16949 > view matrix models
    16950 > #26,-0.55847,0.82251,0.10764,267.59,-0.82054,-0.5668,0.073894,483.33,0.12179,-0.047053,0.99144,221.84
    16951 
    16952 > fitmap #26 inMap #1
    16953 
    16954 Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 93502
    16955 points 
    16956 correlation = 0.704, correlation about mean = 0.2338, overlap = 60.62 
    16957 steps = 116, shift = 10.2, angle = 9.2 degrees 
    16958  
    16959 Position of emd_3720_2017_leaf.map (#26) relative to postprocess_20231221.mrc
    16960 (#1) coordinates: 
    16961 Matrix rotation and translation 
    16962 -0.53804057 0.84238896 -0.02988589 166.48440525 
    16963 -0.84278216 -0.53825370 0.00107146 370.35180431 
    16964 -0.01518361 0.02576378 0.99955273 111.83435343 
    16965 Axis 0.01465058 -0.00872323 -0.99985462 
    16966 Axis point 185.24518036 138.63002335 0.00000000 
    16967 Rotation angle (degrees) 122.57279905 
    16968 Shift along axis -112.60966719 
    16969  
    16970 
    16971 > select subtract #26
    16972 
    16973 Nothing selected 
    16974 
    16975 > hide #!26 models
    16976 
    16977 > color #26 #f6f9afff models
    16978 
    16979 > show #!25 models
    16980 
    16981 > color #25 #f9f9b4ff models
    16982 
    16983 > show #!26 models
    16984 
    16985 > hide #!25 models
    16986 
    16987 > show #!25 models
    16988 
    16989 > hide #!26 models
    16990 
    16991 > show #!26 models
    16992 
    16993 > hide #!26 models
    16994 
    16995 > show #!26 models
    16996 
    16997 > hide #!26 models
    16998 
    16999 > hide #!25 models
    17000 
    17001 > show #!1 models
    17002 
    17003 > show #!24 models
    17004 
    17005 > fitmap #24 inMap #1
    17006 
    17007 Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 6862
    17008 points 
    17009 correlation = 1, correlation about mean = 0.9998, overlap = 0.8994 
    17010 steps = 44, shift = 0.0835, angle = 0.0216 degrees 
    17011  
    17012 Position of postprocess_20231221.mrc (#24) relative to
    17013 postprocess_20231221.mrc (#1) coordinates: 
    17014 Matrix rotation and translation 
    17015 0.99999998 0.00009904 -0.00019217 0.02086519 
    17016 -0.00009901 0.99999999 0.00013925 0.00946728 
    17017 0.00019218 -0.00013923 0.99999997 -0.04895539 
    17018 Axis -0.54148696 -0.74733003 -0.38508401 
    17019 Axis point 253.79232735 0.00000000 109.89549266 
    17020 Rotation angle (degrees) 0.01473352 
    17021 Shift along axis 0.00047852 
    17022  
    17023 
    17024 > hide #!24 models
    17025 
    17026 > show #!25 models
    17027 
    17028 > hide #!25 models
    17029 
    17030 > rename #26 id #40
    17031 
    17032 > show #3 models
    17033 
    17034 > combine #3 modelId #26
    17035 
    17036 > select add #26
    17037 
    17038 9810 atoms, 10032 bonds, 1233 residues, 1 model selected 
    17039 
    17040 > select subtract #26
    17041 
    17042 Nothing selected 
    17043 
    17044 > select add #26
    17045 
    17046 9810 atoms, 10032 bonds, 1233 residues, 1 model selected 
    17047 
    17048 > select subtract #26
    17049 
    17050 Nothing selected 
    17051 
    17052 > hide #26 models
    17053 
    17054 > combine #4 modelId #27
    17055 
    17056 > hide #27 models
    17057 
    17058 > combine #5 modelId #26
    17059 
    17060 Traceback (most recent call last): 
    17061 File
    17062 "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
    17063 packages/chimerax/cmd_line/tool.py", line 319, in execute 
    17064 cmd.run(cmd_text) 
    17065 File
    17066 "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
    17067 packages/chimerax/core/commands/cli.py", line 2897, in run 
    17068 result = ci.function(session, **kw_args) 
    17069 File
    17070 "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
    17071 packages/chimerax/atomic/cmd.py", line 80, in combine_cmd 
    17072 session.models.add([combination]) 
    17073 File
    17074 "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
    17075 packages/chimerax/core/models.py", line 699, in add 
    17076 p = self._parent_for_added_model(model, parent, root_model = root_model) 
    17077 File
    17078 "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
    17079 packages/chimerax/core/models.py", line 766, in _parent_for_added_model 
    17080 raise ValueError('Tried to add model %s with the same id as another model %s' 
    17081 ValueError: Tried to add model copy of hArf1_P84078 #26 with the same id as
    17082 another model copy of CopA_F8WHL2.pdb #26 
    17083  
    17084 ValueError: Tried to add model copy of hArf1_P84078 #26 with the same id as
    17085 another model copy of CopA_F8WHL2.pdb #26 
    17086  
    17087 File
    17088 "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
    17089 packages/chimerax/core/models.py", line 766, in _parent_for_added_model 
    17090 raise ValueError('Tried to add model %s with the same id as another model %s' 
    17091  
    17092 See log for complete Python traceback. 
    17093  
    17094 
    17095 > combine #5 modelId #28
    17096 
    17097 > combine #6 modelId #29
    17098 
    17099 > combine #7 modelId #30
    17100 
    17101 > combine #8 modelId #31
    17102 
    17103 > combine #9 modelId #32
    17104 
    17105 > combine #10 modelId #33
    17106 
    17107 > combine #11 modelId #34
    17108 
    17109 > combine #12 modelId #35
    17110 
    17111 > show #27 models
    17112 
    17113 > show #26 models
    17114 
    17115 > show #!25 models
    17116 
    17117 > show #!24 models
    17118 
    17119 > hide #3 models
    17120 
    17121 > select add #24
    17122 
    17123 2 models selected 
    17124 
    17125 > select add #25
    17126 
    17127 4 models selected 
    17128 
    17129 > select add #26
    17130 
    17131 9810 atoms, 10032 bonds, 1233 residues, 5 models selected 
    17132 
    17133 > select add #27
    17134 
    17135 17311 atoms, 17651 bonds, 2186 residues, 6 models selected 
    17136 
    17137 > select add #28
    17138 
    17139 18768 atoms, 19134 bonds, 2367 residues, 7 models selected 
    17140 
    17141 > select add #29
    17142 
    17143 20225 atoms, 20617 bonds, 2548 residues, 8 models selected 
    17144 
    17145 > select add #30
    17146 
    17147 27439 atoms, 27990 bonds, 3453 residues, 9 models selected 
    17148 
    17149 > select add #31
    17150 
    17151 28901 atoms, 29471 bonds, 3632 residues, 10 models selected 
    17152 
    17153 > select add #32
    17154 
    17155 35574 atoms, 36257 bonds, 1 pseudobond, 4485 residues, 12 models selected 
    17156 
    17157 > select add #33
    17158 
    17159 36994 atoms, 37698 bonds, 1 pseudobond, 4662 residues, 13 models selected 
    17160 
    17161 > select add #34
    17162 
    17163 39361 atoms, 40096 bonds, 1 pseudobond, 4960 residues, 14 models selected 
    17164 
    17165 > select add #35
    17166 
    17167 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 15 models selected 
    17168 
    17169 > show #!13 models
    17170 
    17171 > view matrix models
    17172 > #25,-0.34889,0.93716,-0.003888,242.9,-0.93695,-0.34889,-0.019709,475.09,-0.019827,-0.0032334,0.9998,227.68,#24,0.97737,-0.20999,0.025535,155.17,0.21041,0.9775,-0.015062,79.841,-0.021798,0.020094,0.99956,112.1,#26,0.9145,0.2542,0.31475,268.43,-0.0087926,0.79028,-0.61269,349.5,-0.40449,0.55754,0.72494,352.58,#27,-0.028359,-0.84788,0.52942,286,-0.059539,0.53013,0.84583,313.33,-0.99782,-0.0075343,-0.065516,349,#28,0.31644,0.15578,0.93574,241.47,-0.64886,-0.68403,0.3333,299.86,0.69199,-0.71263,-0.11537,291.74,#29,-0.71941,-0.60958,0.33295,357.19,-0.64676,0.41312,-0.64112,319.13,0.25327,-0.67657,-0.69145,331.26,#30,-0.18159,0.036625,-0.98269,308.25,-0.032973,-0.99897,-0.031139,289.3,-0.98282,0.026748,0.18261,350.04,#31,0.43065,0.88133,0.19441,54.266,-0.82145,0.29354,0.48893,156.38,0.37384,-0.37026,0.85039,588.54,#32,0.34531,-0.42427,-0.83711,320.98,0.64973,-0.53557,0.53946,398.89,-0.67721,-0.73018,0.090725,371.57,#33,0.26632,-0.95725,-0.11288,335.32,-0.35637,0.011022,-0.93428,361.06,0.89559,0.28904,-0.3382,330.07,#34,0.798,-0.13224,0.58798,304.64,-0.53929,-0.59219,0.59873,346.6,0.26901,-0.79488,-0.54388,303.77,#35,-0.87975,0.093127,-0.46623,334.26,0.2392,0.93418,-0.26476,361.44,0.41089,-0.34444,-0.84411,329.19
    17173 
    17174 > ui mousemode right "translate selected models"
    17175 
    17176 > view matrix models
    17177 > #25,-0.34889,0.93716,-0.003888,259.26,-0.93695,-0.34889,-0.019709,272.45,-0.019827,-0.0032334,0.9998,250.74,#24,0.97737,-0.20999,0.025535,171.52,0.21041,0.9775,-0.015062,-122.8,-0.021798,0.020094,0.99956,135.16,#26,0.9145,0.2542,0.31475,284.79,-0.0087926,0.79028,-0.61269,146.86,-0.40449,0.55754,0.72494,375.64,#27,-0.028359,-0.84788,0.52942,302.35,-0.059539,0.53013,0.84583,110.69,-0.99782,-0.0075343,-0.065516,372.05,#28,0.31644,0.15578,0.93574,257.82,-0.64886,-0.68403,0.3333,97.217,0.69199,-0.71263,-0.11537,314.79,#29,-0.71941,-0.60958,0.33295,373.55,-0.64676,0.41312,-0.64112,116.49,0.25327,-0.67657,-0.69145,354.31,#30,-0.18159,0.036625,-0.98269,324.61,-0.032973,-0.99897,-0.031139,86.663,-0.98282,0.026748,0.18261,373.09,#31,0.43065,0.88133,0.19441,70.621,-0.82145,0.29354,0.48893,-46.259,0.37384,-0.37026,0.85039,611.6,#32,0.34531,-0.42427,-0.83711,337.33,0.64973,-0.53557,0.53946,196.25,-0.67721,-0.73018,0.090725,394.62,#33,0.26632,-0.95725,-0.11288,351.67,-0.35637,0.011022,-0.93428,158.42,0.89559,0.28904,-0.3382,353.12,#34,0.798,-0.13224,0.58798,321,-0.53929,-0.59219,0.59873,143.96,0.26901,-0.79488,-0.54388,326.82,#35,-0.87975,0.093127,-0.46623,350.61,0.2392,0.93418,-0.26476,158.8,0.41089,-0.34444,-0.84411,352.24
    17178 
    17179 > view matrix models
    17180 > #25,-0.34889,0.93716,-0.003888,248.71,-0.93695,-0.34889,-0.019709,636.82,-0.019827,-0.0032334,0.9998,207.75,#24,0.97737,-0.20999,0.025535,160.98,0.21041,0.9775,-0.015062,241.57,-0.021798,0.020094,0.99956,92.166,#26,0.9145,0.2542,0.31475,274.24,-0.0087926,0.79028,-0.61269,511.23,-0.40449,0.55754,0.72494,332.65,#27,-0.028359,-0.84788,0.52942,291.81,-0.059539,0.53013,0.84583,475.06,-0.99782,-0.0075343,-0.065516,329.06,#28,0.31644,0.15578,0.93574,247.28,-0.64886,-0.68403,0.3333,461.59,0.69199,-0.71263,-0.11537,271.8,#29,-0.71941,-0.60958,0.33295,363,-0.64676,0.41312,-0.64112,480.86,0.25327,-0.67657,-0.69145,311.32,#30,-0.18159,0.036625,-0.98269,314.06,-0.032973,-0.99897,-0.031139,451.03,-0.98282,0.026748,0.18261,330.11,#31,0.43065,0.88133,0.19441,60.076,-0.82145,0.29354,0.48893,318.11,0.37384,-0.37026,0.85039,568.61,#32,0.34531,-0.42427,-0.83711,326.79,0.64973,-0.53557,0.53946,560.62,-0.67721,-0.73018,0.090725,351.64,#33,0.26632,-0.95725,-0.11288,341.13,-0.35637,0.011022,-0.93428,522.79,0.89559,0.28904,-0.3382,310.14,#34,0.798,-0.13224,0.58798,310.45,-0.53929,-0.59219,0.59873,508.33,0.26901,-0.79488,-0.54388,283.84,#35,-0.87975,0.093127,-0.46623,340.07,0.2392,0.93418,-0.26476,523.16,0.41089,-0.34444,-0.84411,309.25
    17181 
    17182 > ui mousemode right "rotate selected models"
    17183 
    17184 > view matrix models
    17185 > #25,0.18237,0.97993,0.080544,169.64,-0.98154,0.18625,-0.043568,594.7,-0.057694,-0.071112,0.9958,219.25,#24,0.72524,-0.6807,0.10328,289.46,0.686,0.72719,-0.02437,214.03,-0.058512,0.088521,0.99435,85.025,#26,0.75605,-0.14818,0.63752,265.26,0.47541,0.7938,-0.3793,497.36,-0.44986,0.58986,0.67059,335.05,#27,-0.06719,-0.99766,0.012461,298.61,-0.040957,0.015236,0.99904,475.59,-0.9969,0.066615,-0.041885,328.44,#28,0.65513,0.43237,0.61956,263.27,-0.40857,-0.48705,0.77192,442.45,0.63551,-0.75884,-0.14243,272.8,#29,-0.26333,-0.78321,0.56324,355.15,-0.93163,0.054896,-0.35923,517.81,0.25043,-0.61933,-0.74412,307.52,#30,-0.21067,0.54708,-0.81013,330.06,-0.097844,-0.83637,-0.53936,466.52,-0.97265,-0.034359,0.22973,326.94,#31,0.81803,0.57472,-0.022662,199.01,-0.4893,0.71607,0.49783,215.56,0.30234,-0.39615,0.86698,569.64,#32,-0.089093,-0.14088,-0.98601,286.16,0.75118,-0.65958,0.026363,566.32,-0.65406,-0.73832,0.16459,354.25,#33,0.47688,-0.80224,0.35916,314.81,-0.18928,-0.49276,-0.84933,542.4,0.85834,0.33705,-0.38684,309.92,#34,0.97903,0.13299,0.15431,294.1,-0.055335,-0.55539,0.82975,514.82,0.19604,-0.82089,-0.53639,284.39,#35,-0.84439,-0.42632,-0.32442,313.64,-0.26047,0.85589,-0.44678,542.2,0.46814,-0.29275,-0.83375,309.11
    17186 
    17187 > view matrix models
    17188 > #25,0.21528,0.97374,-0.074004,187.61,-0.96375,0.19962,-0.17704,606.21,-0.15762,0.10943,0.98142,212.92,#24,0.70693,-0.70538,-0.051845,336.95,0.69167,0.70478,-0.1577,247.8,0.14778,0.07562,0.98613,50.064,#26,0.80378,-0.25918,0.53551,266.65,0.53597,0.70614,-0.46272,494.68,-0.25821,0.65894,0.70649,328.42,#27,0.089621,-0.99594,-0.0078889,301.19,0.093512,0.00052849,0.99562,474.19,-0.99158,-0.089966,0.09318,324.33,#28,0.55913,0.55788,0.61331,275.82,-0.48688,-0.37781,0.78753,448.66,0.67106,-0.73894,0.060377,259.93,#29,-0.27405,-0.67866,0.68141,359.14,-0.95836,0.13355,-0.25242,519.16,0.080305,-0.72221,-0.687,318.35,#30,-0.05431,0.56793,-0.82128,332.72,0.033072,-0.82102,-0.56994,465.58,-0.99798,-0.058115,0.025807,326.61,#31,0.77391,0.60995,-0.17038,172.31,-0.52102,0.76617,0.3762,183.44,0.36,-0.20238,0.91074,510.27,#32,-0.0064415,-0.006784,-0.99996,282.45,0.83203,-0.55473,-0.0015962,560.54,-0.5547,-0.832,0.0092177,359.63,#33,0.34263,-0.8314,0.43747,318.27,-0.30066,-0.5382,-0.78736,542.98,0.89006,0.13825,-0.43437,317.59,#34,0.93781,0.2737,0.21353,302.52,-0.075794,-0.43883,0.89537,518.97,0.33876,-0.85587,-0.3908,285.69,#35,-0.8996,-0.39839,-0.17889,317.26,-0.32596,0.88516,-0.33204,542.88,0.29063,-0.24039,-0.92615,316.59
    17189 
    17190 > ui mousemode right "translate selected models"
    17191 
    17192 > view matrix models
    17193 > #25,0.21528,0.97374,-0.074004,186.53,-0.96375,0.19962,-0.17704,728.02,-0.15762,0.10943,0.98142,198.35,#24,0.70693,-0.70538,-0.051845,335.87,0.69167,0.70478,-0.1577,369.61,0.14778,0.07562,0.98613,35.494,#26,0.80378,-0.25918,0.53551,265.57,0.53597,0.70614,-0.46272,616.5,-0.25821,0.65894,0.70649,313.85,#27,0.089621,-0.99594,-0.0078889,300.1,0.093512,0.00052849,0.99562,596,-0.99158,-0.089966,0.09318,309.76,#28,0.55913,0.55788,0.61331,274.74,-0.48688,-0.37781,0.78753,570.47,0.67106,-0.73894,0.060377,245.36,#29,-0.27405,-0.67866,0.68141,358.06,-0.95836,0.13355,-0.25242,640.97,0.080305,-0.72221,-0.687,303.78,#30,-0.05431,0.56793,-0.82128,331.64,0.033072,-0.82102,-0.56994,587.39,-0.99798,-0.058115,0.025807,312.04,#31,0.77391,0.60995,-0.17038,171.23,-0.52102,0.76617,0.3762,305.26,0.36,-0.20238,0.91074,495.7,#32,-0.0064415,-0.006784,-0.99996,281.37,0.83203,-0.55473,-0.0015962,682.35,-0.5547,-0.832,0.0092177,345.06,#33,0.34263,-0.8314,0.43747,317.19,-0.30066,-0.5382,-0.78736,664.79,0.89006,0.13825,-0.43437,303.02,#34,0.93781,0.2737,0.21353,301.44,-0.075794,-0.43883,0.89537,640.78,0.33876,-0.85587,-0.3908,271.12,#35,-0.8996,-0.39839,-0.17889,316.17,-0.32596,0.88516,-0.33204,664.69,0.29063,-0.24039,-0.92615,302.02
    17194 
    17195 > view matrix models
    17196 > #25,0.21528,0.97374,-0.074004,221.97,-0.96375,0.19962,-0.17704,638.99,-0.15762,0.10943,0.98142,223.97,#24,0.70693,-0.70538,-0.051845,371.32,0.69167,0.70478,-0.1577,280.59,0.14778,0.07562,0.98613,61.119,#26,0.80378,-0.25918,0.53551,301.01,0.53597,0.70614,-0.46272,527.47,-0.25821,0.65894,0.70649,339.47,#27,0.089621,-0.99594,-0.0078889,335.55,0.093512,0.00052849,0.99562,506.98,-0.99158,-0.089966,0.09318,335.39,#28,0.55913,0.55788,0.61331,310.18,-0.48688,-0.37781,0.78753,481.44,0.67106,-0.73894,0.060377,270.98,#29,-0.27405,-0.67866,0.68141,393.5,-0.95836,0.13355,-0.25242,551.95,0.080305,-0.72221,-0.687,329.4,#30,-0.05431,0.56793,-0.82128,367.08,0.033072,-0.82102,-0.56994,498.37,-0.99798,-0.058115,0.025807,337.67,#31,0.77391,0.60995,-0.17038,206.67,-0.52102,0.76617,0.3762,216.23,0.36,-0.20238,0.91074,521.32,#32,-0.0064415,-0.006784,-0.99996,316.81,0.83203,-0.55473,-0.0015962,593.32,-0.5547,-0.832,0.0092177,370.69,#33,0.34263,-0.8314,0.43747,352.63,-0.30066,-0.5382,-0.78736,575.76,0.89006,0.13825,-0.43437,328.65,#34,0.93781,0.2737,0.21353,336.88,-0.075794,-0.43883,0.89537,551.76,0.33876,-0.85587,-0.3908,296.75,#35,-0.8996,-0.39839,-0.17889,351.62,-0.32596,0.88516,-0.33204,575.66,0.29063,-0.24039,-0.92615,327.65
    17197 
    17198 > view matrix models
    17199 > #25,0.21528,0.97374,-0.074004,190.23,-0.96375,0.19962,-0.17704,638.64,-0.15762,0.10943,0.98142,205.91,#24,0.70693,-0.70538,-0.051845,339.58,0.69167,0.70478,-0.1577,280.23,0.14778,0.07562,0.98613,43.056,#26,0.80378,-0.25918,0.53551,269.27,0.53597,0.70614,-0.46272,527.12,-0.25821,0.65894,0.70649,321.41,#27,0.089621,-0.99594,-0.0078889,303.81,0.093512,0.00052849,0.99562,506.62,-0.99158,-0.089966,0.09318,317.32,#28,0.55913,0.55788,0.61331,278.44,-0.48688,-0.37781,0.78753,481.09,0.67106,-0.73894,0.060377,252.92,#29,-0.27405,-0.67866,0.68141,361.76,-0.95836,0.13355,-0.25242,551.59,0.080305,-0.72221,-0.687,311.34,#30,-0.05431,0.56793,-0.82128,335.34,0.033072,-0.82102,-0.56994,498.01,-0.99798,-0.058115,0.025807,319.61,#31,0.77391,0.60995,-0.17038,174.93,-0.52102,0.76617,0.3762,215.88,0.36,-0.20238,0.91074,503.26,#32,-0.0064415,-0.006784,-0.99996,285.07,0.83203,-0.55473,-0.0015962,592.97,-0.5547,-0.832,0.0092177,352.63,#33,0.34263,-0.8314,0.43747,320.9,-0.30066,-0.5382,-0.78736,575.41,0.89006,0.13825,-0.43437,310.59,#34,0.93781,0.2737,0.21353,305.14,-0.075794,-0.43883,0.89537,551.4,0.33876,-0.85587,-0.3908,278.69,#35,-0.8996,-0.39839,-0.17889,319.88,-0.32596,0.88516,-0.33204,575.31,0.29063,-0.24039,-0.92615,309.59
    17200 
    17201 > ui mousemode right "rotate selected models"
    17202 
    17203 > view matrix models
    17204 > #25,0.50923,0.84815,0.14602,141.9,-0.85927,0.51059,0.03087,569.07,-0.048376,-0.14119,0.9888,217.99,#24,0.4365,-0.88527,0.16053,379.09,0.89134,0.44977,0.056666,247.89,-0.12237,0.11835,0.9854,84.349,#26,0.51686,-0.38221,0.76601,271.72,0.68743,0.71858,-0.10529,516.05,-0.5102,0.581,0.63415,329.17,#27,-0.10416,-0.93516,-0.33857,310.14,-0.10551,-0.32811,0.93873,506.9,-0.98895,0.1335,-0.064494,320.81,#28,0.79073,0.53192,0.30302,285.51,-0.12816,-0.34017,0.93159,461.16,0.5986,-0.77547,-0.20081,268.42,#29,0.091956,-0.78651,0.61069,347.17,-0.95321,-0.2469,-0.17445,565.11,0.28798,-0.56608,-0.77241,295.19,#30,-0.21726,0.80127,-0.55747,342.64,-0.20742,-0.59596,-0.77576,509.22,-0.95382,-0.052911,0.29567,317.38,#31,0.95271,0.26637,-0.14626,320.93,-0.1621,0.85256,0.49685,239.34,0.25704,-0.44965,0.85542,573.82,#32,-0.38139,0.056717,-0.92267,268.33,0.64435,-0.69938,-0.30934,588.75,-0.66284,-0.7125,0.23019,345.41,#33,0.55998,-0.56032,0.61029,301,0.025451,-0.72464,-0.68866,574.3,0.82811,0.40117,-0.39152,299.77,#34,0.94633,0.2721,-0.17443,289.8,0.29564,-0.51058,0.80741,540.15,0.13064,-0.81564,-0.56362,276.31,#35,-0.67336,-0.71329,-0.19445,299.93,-0.51577,0.64165,-0.56768,573.67,0.52969,-0.28196,-0.79995,299.05
    17205 
    17206 > view matrix models
    17207 > #25,0.42548,0.84231,-0.33087,215.81,-0.77652,0.52757,0.3445,513.87,0.46474,0.11035,0.87855,153.55,#24,0.4908,-0.81231,-0.31508,470.14,0.85183,0.3714,0.36939,193.32,-0.18304,-0.44969,0.87423,252.75,#26,0.73166,-0.56955,0.37455,275.65,0.5491,0.81802,0.17126,510.7,-0.40393,0.080366,0.91125,322.17,#27,0.36385,-0.90563,-0.21784,312.97,-0.41097,-0.36596,0.83498,503.43,-0.8359,-0.21428,-0.50533,335.73,#28,0.41171,0.81299,0.41176,313.2,0.14132,-0.50332,0.85247,441.67,0.90029,-0.29278,-0.32212,295.37,#29,-0.10494,-0.44353,0.8901,360.78,-0.80605,-0.48629,-0.33735,554.58,0.58247,-0.75286,-0.30647,313.05,#30,0.24209,0.69968,-0.67219,343.39,-0.5084,-0.4986,-0.70209,507.91,-0.82639,0.51171,0.23502,347.06,#31,0.71227,0.49124,-0.50135,189.91,0.022018,0.69828,0.71548,327.93,0.70156,-0.52065,0.48655,635.35,#32,0.0076163,0.34462,-0.93871,269.02,0.37001,-0.87308,-0.31753,584.15,-0.929,-0.34491,-0.13416,311.14,#33,0.10925,-0.72117,0.68409,318.38,0.33293,-0.62191,-0.70879,559.95,0.9366,0.30519,0.17215,292.78,#34,0.79046,0.59314,0.15285,317.59,0.41656,-0.70353,0.57578,519.33,0.44905,-0.39146,-0.80319,278.94,#35,-0.86959,-0.46326,0.17086,317.74,-0.39659,0.44918,-0.8006,559.02,0.29414,-0.76395,-0.57433,291.89
    17208 
    17209 > view matrix models
    17210 > #25,0.48491,0.64504,-0.59058,264.36,-0.71196,0.68334,0.16178,512.71,0.50792,0.34202,0.7906,133.62,#24,0.30034,-0.75672,-0.58066,559.49,0.95379,0.23289,0.18985,246.55,-0.0084323,-0.61085,0.7917,272.67,#26,0.64964,-0.75219,0.11033,284.18,0.73824,0.65882,0.14476,503.64,-0.18158,-0.012587,0.9833,311.24,#27,0.62819,-0.72051,-0.29367,318.18,-0.22379,-0.52881,0.8187,503.23,-0.74518,-0.44859,-0.49344,333,#28,0.15507,0.95405,0.25641,342.17,0.12514,-0.27643,0.95285,448.01,0.97995,-0.11567,-0.16225,290.36,#29,-0.03546,-0.13522,0.99018,356.15,-0.87015,-0.48312,-0.097137,565.85,0.49151,-0.86505,-0.10053,325.62,#30,0.53437,0.66699,-0.51921,343.34,-0.34598,-0.38786,-0.85432,512.96,-0.7712,0.63616,0.023504,351.61,#31,0.51188,0.41262,-0.75347,177.33,0.097903,0.84336,0.52836,272.24,0.85346,-0.34422,0.3913,583.04,#32,0.12504,0.61164,-0.78119,262.77,0.46553,-0.73148,-0.49821,574.62,-0.87615,-0.30138,-0.3762,303.24,#33,-0.18477,-0.60032,0.77812,319.29,0.24043,-0.79531,-0.55649,564.06,0.95292,0.084257,0.29128,296.02,#34,0.54734,0.8162,0.185,331.36,0.52601,-0.50744,0.68251,526.09,0.65095,-0.27625,-0.70707,280.05,#35,-0.79214,-0.37564,0.48105,319.11,-0.60823,0.42036,-0.67332,563.12,0.050705,-0.82595,-0.56146,294.95
    17211 
    17212 > view matrix models
    17213 > #25,0.62413,0.55993,-0.54492,253.09,-0.58658,0.79651,0.14661,486.98,0.51613,0.22813,0.82557,141.89,#24,0.15242,-0.82823,-0.53926,594.69,0.98219,0.06629,0.17579,279.35,-0.10985,-0.55646,0.82358,274.11,#26,0.51555,-0.84112,0.16346,287.79,0.80395,0.54083,0.24732,496.93,-0.29643,0.0039063,0.95505,317.17,#27,0.59482,-0.66576,-0.4505,323.06,-0.19826,-0.66461,0.7204,503.34,-0.77903,-0.33919,-0.52732,335.74,#28,0.21023,0.9728,0.097302,351.67,0.23406,-0.14671,0.96109,448.48,0.94922,-0.17927,-0.25854,295.56,#29,0.13366,-0.12808,0.98272,350.52,-0.81827,-0.57368,0.036526,569.81,0.55908,-0.809,-0.18149,320.11,#30,0.51863,0.76498,-0.38188,347.84,-0.33444,-0.22956,-0.91403,518.2,-0.78688,0.60176,0.13678,351.19,#31,0.55617,0.25355,-0.79144,238.28,0.24672,0.85902,0.44858,278.17,0.7936,-0.44475,0.41521,614.71,#32,-0.014613,0.68908,-0.72454,255.42,0.39749,-0.66089,-0.63657,563.1,-0.91749,-0.29729,-0.26424,305.62,#33,-0.14411,-0.46595,0.873,312.16,0.29674,-0.86196,-0.41107,560.11,0.94402,0.19981,0.26248,294.18,#34,0.51122,0.85908,0.025109,328.5,0.65543,-0.4086,0.63519,522.97,0.55594,-0.30827,-0.77195,280.2,#35,-0.68567,-0.49743,0.53144,312.04,-0.70798,0.28603,-0.64572,559.07,0.16919,-0.819,-0.54829,293.21
    17214 
    17215 > view matrix models
    17216 > #25,0.72986,0.45034,-0.5143,250.65,-0.54918,0.83428,-0.048833,502.39,0.40708,0.31808,0.85622,139.96,#24,0.0023112,-0.85836,-0.51305,625.45,0.99972,0.014128,-0.019133,332.95,0.023671,-0.51286,0.85815,229.96,#26,0.37665,-0.90908,0.17805,293.11,0.90486,0.40222,0.13949,493.98,-0.19842,0.10857,0.97409,313.6,#27,0.57363,-0.58008,-0.57832,328.04,-0.00043152,-0.70624,0.70797,503.12,-0.81911,-0.40586,-0.40537,331.67,#28,0.22585,0.97248,-0.057236,362.04,0.13434,0.0271,0.99056,459.06,0.96485,-0.23141,-0.12453,283.23,#29,0.28121,-0.087825,0.95562,344.68,-0.8559,-0.4733,0.20837,574.46,0.43399,-0.87651,-0.20827,324.57,#30,0.51765,0.822,-0.2374,351.21,-0.14427,-0.18964,-0.9712,519.35,-0.84334,0.53699,0.020421,348.19,#31,0.55726,0.10169,-0.82409,292.19,0.21974,0.93903,0.26447,232.53,0.80074,-0.32847,0.50093,579.09,#32,-0.12232,0.76018,-0.6381,250.91,0.50955,-0.50362,-0.69765,555.46,-0.8517,-0.41048,-0.32575,312.56,#33,-0.13357,-0.32454,0.93639,306.77,0.14292,-0.94129,-0.30585,562.62,0.98068,0.092976,0.17212,298.87,#34,0.44063,0.89098,-0.10952,327.53,0.64499,-0.22937,0.72896,530.57,0.62437,-0.39184,-0.67574,279.27,#35,-0.56558,-0.57777,0.58847,306.75,-0.81956,0.31434,-0.47907,561.71,0.091809,-0.75325,-0.6513,297.77
    17217 
    17218 > ui mousemode right zoom
    17219 
    17220 > show #!9 models
    17221 
    17222 > hide #!9 models
    17223 
    17224 > show #!9 models
    17225 
    17226 > hide #!9 models
    17227 
    17228 > show #4 models
    17229 
    17230 > hide #4 models
    17231 
    17232 > show #3 models
    17233 
    17234 > ui mousemode right "translate selected models"
    17235 
    17236 > view matrix models
    17237 > #25,0.72986,0.45034,-0.5143,389.96,-0.54918,0.83428,-0.048833,659.89,0.40708,0.31808,0.85622,62.474,#24,0.0023112,-0.85836,-0.51305,764.76,0.99972,0.014128,-0.019133,490.45,0.023671,-0.51286,0.85815,152.47,#26,0.37665,-0.90908,0.17805,432.42,0.90486,0.40222,0.13949,651.48,-0.19842,0.10857,0.97409,236.12,#27,0.57363,-0.58008,-0.57832,467.35,-0.00043152,-0.70624,0.70797,660.62,-0.81911,-0.40586,-0.40537,254.18,#28,0.22585,0.97248,-0.057236,501.35,0.13434,0.0271,0.99056,616.56,0.96485,-0.23141,-0.12453,205.75,#29,0.28121,-0.087825,0.95562,483.99,-0.8559,-0.4733,0.20837,731.96,0.43399,-0.87651,-0.20827,247.08,#30,0.51765,0.822,-0.2374,490.53,-0.14427,-0.18964,-0.9712,676.85,-0.84334,0.53699,0.020421,270.7,#31,0.55726,0.10169,-0.82409,431.5,0.21974,0.93903,0.26447,390.03,0.80074,-0.32847,0.50093,501.6,#32,-0.12232,0.76018,-0.6381,390.22,0.50955,-0.50362,-0.69765,712.96,-0.8517,-0.41048,-0.32575,235.07,#33,-0.13357,-0.32454,0.93639,446.08,0.14292,-0.94129,-0.30585,720.12,0.98068,0.092976,0.17212,221.38,#34,0.44063,0.89098,-0.10952,466.84,0.64499,-0.22937,0.72896,688.07,0.62437,-0.39184,-0.67574,201.78,#35,-0.56558,-0.57777,0.58847,446.06,-0.81956,0.31434,-0.47907,719.21,0.091809,-0.75325,-0.6513,220.28
    17238 
    17239 > view matrix models
    17240 > #25,0.72986,0.45034,-0.5143,267.48,-0.54918,0.83428,-0.048833,664.17,0.40708,0.31808,0.85622,111.09,#24,0.0023112,-0.85836,-0.51305,642.27,0.99972,0.014128,-0.019133,494.73,0.023671,-0.51286,0.85815,201.09,#26,0.37665,-0.90908,0.17805,309.93,0.90486,0.40222,0.13949,655.76,-0.19842,0.10857,0.97409,284.73,#27,0.57363,-0.58008,-0.57832,344.86,-0.00043152,-0.70624,0.70797,664.9,-0.81911,-0.40586,-0.40537,302.8,#28,0.22585,0.97248,-0.057236,378.86,0.13434,0.0271,0.99056,620.84,0.96485,-0.23141,-0.12453,254.37,#29,0.28121,-0.087825,0.95562,361.5,-0.8559,-0.4733,0.20837,736.24,0.43399,-0.87651,-0.20827,295.7,#30,0.51765,0.822,-0.2374,368.04,-0.14427,-0.18964,-0.9712,681.13,-0.84334,0.53699,0.020421,319.32,#31,0.55726,0.10169,-0.82409,309.01,0.21974,0.93903,0.26447,394.31,0.80074,-0.32847,0.50093,550.22,#32,-0.12232,0.76018,-0.6381,267.73,0.50955,-0.50362,-0.69765,717.24,-0.8517,-0.41048,-0.32575,283.69,#33,-0.13357,-0.32454,0.93639,323.59,0.14292,-0.94129,-0.30585,724.4,0.98068,0.092976,0.17212,270,#34,0.44063,0.89098,-0.10952,344.35,0.64499,-0.22937,0.72896,692.35,0.62437,-0.39184,-0.67574,250.4,#35,-0.56558,-0.57777,0.58847,323.57,-0.81956,0.31434,-0.47907,723.49,0.091809,-0.75325,-0.6513,268.9
    17241 
    17242 > view matrix models
    17243 > #25,0.72986,0.45034,-0.5143,276.32,-0.54918,0.83428,-0.048833,565,0.40708,0.31808,0.85622,113.98,#24,0.0023112,-0.85836,-0.51305,651.12,0.99972,0.014128,-0.019133,395.56,0.023671,-0.51286,0.85815,203.98,#26,0.37665,-0.90908,0.17805,318.78,0.90486,0.40222,0.13949,556.59,-0.19842,0.10857,0.97409,287.62,#27,0.57363,-0.58008,-0.57832,353.71,-0.00043152,-0.70624,0.70797,565.73,-0.81911,-0.40586,-0.40537,305.69,#28,0.22585,0.97248,-0.057236,387.71,0.13434,0.0271,0.99056,521.67,0.96485,-0.23141,-0.12453,257.25,#29,0.28121,-0.087825,0.95562,370.35,-0.8559,-0.4733,0.20837,637.07,0.43399,-0.87651,-0.20827,298.59,#30,0.51765,0.822,-0.2374,376.89,-0.14427,-0.18964,-0.9712,581.96,-0.84334,0.53699,0.020421,322.21,#31,0.55726,0.10169,-0.82409,317.86,0.21974,0.93903,0.26447,295.14,0.80074,-0.32847,0.50093,553.1,#32,-0.12232,0.76018,-0.6381,276.58,0.50955,-0.50362,-0.69765,618.07,-0.8517,-0.41048,-0.32575,286.58,#33,-0.13357,-0.32454,0.93639,332.44,0.14292,-0.94129,-0.30585,625.23,0.98068,0.092976,0.17212,272.88,#34,0.44063,0.89098,-0.10952,353.2,0.64499,-0.22937,0.72896,593.18,0.62437,-0.39184,-0.67574,253.29,#35,-0.56558,-0.57777,0.58847,332.42,-0.81956,0.31434,-0.47907,624.32,0.091809,-0.75325,-0.6513,271.78
    17244 
    17245 > view matrix models
    17246 > #25,0.72986,0.45034,-0.5143,282.76,-0.54918,0.83428,-0.048833,571.39,0.40708,0.31808,0.85622,109.8,#24,0.0023112,-0.85836,-0.51305,657.56,0.99972,0.014128,-0.019133,401.95,0.023671,-0.51286,0.85815,199.8,#26,0.37665,-0.90908,0.17805,325.22,0.90486,0.40222,0.13949,562.98,-0.19842,0.10857,0.97409,283.44,#27,0.57363,-0.58008,-0.57832,360.15,-0.00043152,-0.70624,0.70797,572.11,-0.81911,-0.40586,-0.40537,301.51,#28,0.22585,0.97248,-0.057236,394.15,0.13434,0.0271,0.99056,528.06,0.96485,-0.23141,-0.12453,253.07,#29,0.28121,-0.087825,0.95562,376.79,-0.8559,-0.4733,0.20837,643.45,0.43399,-0.87651,-0.20827,294.41,#30,0.51765,0.822,-0.2374,383.33,-0.14427,-0.18964,-0.9712,588.35,-0.84334,0.53699,0.020421,318.03,#31,0.55726,0.10169,-0.82409,324.3,0.21974,0.93903,0.26447,301.53,0.80074,-0.32847,0.50093,548.92,#32,-0.12232,0.76018,-0.6381,283.02,0.50955,-0.50362,-0.69765,624.46,-0.8517,-0.41048,-0.32575,282.4,#33,-0.13357,-0.32454,0.93639,338.88,0.14292,-0.94129,-0.30585,631.62,0.98068,0.092976,0.17212,268.71,#34,0.44063,0.89098,-0.10952,359.64,0.64499,-0.22937,0.72896,599.57,0.62437,-0.39184,-0.67574,249.11,#35,-0.56558,-0.57777,0.58847,338.86,-0.81956,0.31434,-0.47907,630.71,0.091809,-0.75325,-0.6513,267.6
    17247 
    17248 > ui mousemode right "rotate selected models"
    17249 
    17250 > view matrix models
    17251 > #25,0.97821,0.20538,-0.030554,234.84,-0.12876,0.71545,0.68669,442.91,0.16289,-0.66779,0.7263,266.43,#24,-0.35202,-0.93516,-0.039506,644.08,0.65166,-0.27517,0.70684,357.33,-0.67188,0.22308,0.70627,216.66,#26,-0.10683,-0.84648,0.52159,348.76,0.37526,0.45147,0.80954,564.79,-0.92074,0.28221,0.26942,331.2,#27,0.11351,-0.39709,-0.91073,382.05,-0.69703,-0.68505,0.21181,580,-0.708,0.61076,-0.35454,314.17,#28,0.55873,0.68844,-0.46246,404.87,0.79326,-0.28092,0.54021,510.85,0.24198,-0.66868,-0.70307,302.28,#29,0.73289,-0.28311,0.61865,366.63,-0.24665,-0.95801,-0.14621,617.73,0.63407,-0.045429,-0.77194,252.89,#30,0.1093,0.97977,0.16763,402.41,-0.79973,0.18683,-0.57055,600,-0.59033,-0.071697,0.80397,298.08,#31,0.7283,-0.40221,-0.5548,559.38,0.68076,0.33204,0.65293,601.72,-0.078402,-0.85321,0.51563,636.34,#32,-0.65874,0.62896,-0.41288,291.21,-0.31157,-0.72756,-0.61121,608.24,-0.68482,-0.27399,0.67524,312.21,#33,0.26702,0.11683,0.95658,328.53,0.85569,-0.48534,-0.17959,595.35,0.44328,0.86649,-0.22956,269.79,#34,0.40032,0.64472,-0.65121,348.71,0.83038,-0.55578,-0.03978,557.48,-0.38758,-0.52482,-0.75786,270.79,#35,-0.12621,-0.919,0.37352,328.36,-0.37893,-0.30331,-0.87431,593.94,0.91678,-0.25188,-0.30995,269.9
    17252 
    17253 > view matrix models
    17254 > #25,0.95358,-0.16872,-0.24942,303.05,0.26361,0.86809,0.42063,414.76,0.14555,-0.46686,0.87227,229.82,#24,-0.64749,-0.71353,-0.26763,704.9,0.5772,-0.68848,0.43912,524.53,-0.49759,0.12985,0.85764,168.64,#26,-0.33237,-0.92947,0.16006,361.3,0.49643,-0.028103,0.86762,554.76,-0.80193,0.36783,0.47075,324.85,#27,0.33044,-0.022493,-0.94356,383.67,-0.3988,-0.90942,-0.11798,586.12,-0.85543,0.41528,-0.30948,312.76,#28,0.19808,0.68202,-0.704,431.99,0.87543,0.19997,0.44004,537.96,0.44089,-0.70347,-0.55745,284.67,#29,0.8212,0.13698,0.55396,348.73,-0.052455,-0.94853,0.31231,626.82,0.56823,-0.28553,-0.77174,262.36,#30,0.37944,0.80373,0.45831,392.42,-0.51775,0.59498,-0.61476,615.98,-0.76678,-0.0040255,0.6419,302.5,#31,0.3705,-0.57613,-0.72856,563.26,0.92275,0.31791,0.21786,605.71,0.1061,-0.753,0.64941,633.81,#32,-0.52691,0.84767,-0.061819,289.5,-0.39341,-0.30772,-0.86633,572.86,-0.75339,-0.43216,0.49562,316.01,#33,-0.074558,0.38237,0.921,324.97,0.76008,-0.57607,0.3007,587.18,0.64554,0.72245,-0.24768,272.47,#34,-0.015474,0.76892,-0.63916,359.04,0.98648,-0.092569,-0.13524,562.32,-0.16316,-0.63261,-0.75709,264.52,#35,0.12247,-0.72847,0.67404,325.42,-0.59737,-0.59646,-0.53609,585.84,0.79256,-0.337,-0.50821,272.22
    17255 
    17256 > hide #!25 models
    17257 
    17258 > view matrix models
    17259 > #25,0.30995,-0.0019258,-0.95075,448.39,0.90285,0.31401,0.2937,403.27,0.29798,-0.94942,0.099067,350.03,#24,-0.14001,-0.26182,-0.95491,675.41,-0.22961,-0.92953,0.28853,753.38,-0.96316,0.25966,0.070027,406.32,#26,0.29219,-0.77457,-0.56095,360.23,-0.12266,-0.61206,0.78124,557.75,-0.94846,-0.15946,-0.27385,330.37,#27,0.97376,-0.046372,-0.22279,371.59,-0.21628,-0.49313,-0.84264,591.15,-0.07079,0.86872,-0.49022,310.75,#28,-0.5198,0.85059,-0.079367,434.75,0.80692,0.45836,-0.37254,589.35,-0.2805,-0.25769,-0.92462,348.84,#29,0.0094095,0.60008,0.79988,379.42,0.70702,-0.56966,0.41905,579.15,0.70713,0.56159,-0.42963,238.56,#30,0.96849,0.24124,-0.061855,374.74,-0.23434,0.96683,0.10158,614.05,0.08431,-0.083888,0.9929,287.52,#31,-0.18079,0.18103,-0.96672,209.57,0.88293,-0.40316,-0.24062,812.9,-0.43331,-0.89704,-0.086953,556.3,#32,0.43511,0.88878,-0.14405,323.09,-0.81817,0.3235,-0.47534,514.34,-0.37587,0.32468,0.86793,282.44,#33,-0.78852,-0.17781,0.58874,371.52,0.58279,0.089739,0.80765,538.99,-0.19644,0.97997,0.032862,262.29,#34,-0.196,0.93499,0.2956,403.86,0.57487,0.35377,-0.73782,546.34,-0.79443,0.025316,-0.60683,289.54,#35,-0.36445,0.06647,0.92885,372.38,-0.097824,-0.99466,0.032797,538.41,0.92607,-0.07891,0.36901,263.28
    17260 
    17261 > volume #24 level 0.003588
    17262 
    17263 > ui mousemode right "translate selected models"
    17264 
    17265 > view matrix models
    17266 > #25,0.30995,-0.0019258,-0.95075,455.19,0.90285,0.31401,0.2937,440.16,0.29798,-0.94942,0.099067,336.3,#24,-0.14001,-0.26182,-0.95491,682.2,-0.22961,-0.92953,0.28853,790.27,-0.96316,0.25966,0.070027,392.59,#26,0.29219,-0.77457,-0.56095,367.02,-0.12266,-0.61206,0.78124,594.64,-0.94846,-0.15946,-0.27385,316.65,#27,0.97376,-0.046372,-0.22279,378.39,-0.21628,-0.49313,-0.84264,628.04,-0.07079,0.86872,-0.49022,297.03,#28,-0.5198,0.85059,-0.079367,441.55,0.80692,0.45836,-0.37254,626.23,-0.2805,-0.25769,-0.92462,335.11,#29,0.0094095,0.60008,0.79988,386.22,0.70702,-0.56966,0.41905,616.03,0.70713,0.56159,-0.42963,224.84,#30,0.96849,0.24124,-0.061855,381.54,-0.23434,0.96683,0.10158,650.94,0.08431,-0.083888,0.9929,273.8,#31,-0.18079,0.18103,-0.96672,216.37,0.88293,-0.40316,-0.24062,849.79,-0.43331,-0.89704,-0.086953,542.57,#32,0.43511,0.88878,-0.14405,329.89,-0.81817,0.3235,-0.47534,551.23,-0.37587,0.32468,0.86793,268.71,#33,-0.78852,-0.17781,0.58874,378.32,0.58279,0.089739,0.80765,575.88,-0.19644,0.97997,0.032862,248.57,#34,-0.196,0.93499,0.2956,410.66,0.57487,0.35377,-0.73782,583.23,-0.79443,0.025316,-0.60683,275.81,#35,-0.36445,0.06647,0.92885,379.18,-0.097824,-0.99466,0.032797,575.3,0.92607,-0.07891,0.36901,249.55
    17267 
    17268 > ui mousemode right "rotate selected models"
    17269 
    17270 > view matrix models
    17271 > #25,0.57,0.14349,-0.80902,402.3,0.040342,0.97856,0.20198,454.72,0.82065,-0.14777,0.55199,105.5,#24,-0.16153,-0.55902,-0.81327,727.09,0.79684,-0.56004,0.2267,504.14,-0.58219,-0.61143,0.53591,368.84,#26,0.28091,-0.92212,-0.26607,369.6,0.74836,0.036886,0.66227,550.6,-0.60087,-0.38515,0.70043,253.02,#27,0.8544,-0.24309,-0.45924,392.01,-0.20031,-0.9696,0.14056,579.6,-0.47945,-0.028101,-0.87712,269.94,#28,-0.21858,0.96391,-0.15201,449.38,0.67112,0.26158,0.69367,533.25,0.70839,0.049601,-0.70408,268.07,#29,0.2037,0.35782,0.9113,398.91,-0.35108,-0.84221,0.40917,638.1,0.91392,-0.40329,-0.045937,225.81,#30,0.83638,0.5434,-0.071971,403.44,-0.34577,0.42114,-0.8385,609.1,-0.42533,0.72619,0.54012,278.5,#31,0.13358,0.083074,-0.98755,298.8,0.77732,0.60935,0.1564,478.1,0.61476,-0.78854,0.01682,611.59,#32,0.16541,0.92949,-0.32969,322.73,-0.071503,-0.32211,-0.944,582.84,-0.98363,0.17972,0.01318,204.8,#33,-0.54877,-0.18482,0.81529,377.4,0.55413,-0.81064,0.18922,602.07,0.62593,0.55562,0.54727,203.98,#34,0.036777,0.99686,0.070116,409.08,0.97986,-0.049751,0.19337,574.72,0.19625,0.061593,-0.97862,213.51,#35,-0.41921,-0.25383,0.87169,377.98,-0.80402,-0.34214,-0.4863,600.79,0.42168,-0.90472,-0.060654,203.68
    17272 
    17273 > view matrix models
    17274 > #25,0.37461,0.60806,-0.69995,351.15,-0.1851,0.78877,0.58616,466.5,0.90852,-0.090026,0.40803,102.5,#24,0.33175,-0.64403,-0.68933,611.49,0.74672,-0.26728,0.60908,373.1,-0.5765,-0.71679,0.39224,419.96,#26,0.69578,-0.71722,-0.038468,342.85,0.49647,0.44155,0.74736,574.53,-0.51904,-0.5391,0.6633,244.92,#27,0.72783,-0.66054,-0.18425,373.02,-0.60187,-0.74408,0.29001,590.6,-0.32866,-0.10018,-0.93912,266.39,#28,0.0055179,0.95,0.3122,401.36,0.73346,-0.21606,0.64448,522.81,0.67971,0.22543,-0.69798,273.14,#29,-0.14221,-0.01648,0.9897,413.87,-0.35461,-0.93265,-0.066482,636.59,0.92414,-0.36041,0.12679,225.98,#30,0.63489,0.546,-0.54663,395.32,-0.71888,0.15827,-0.67688,611.77,-0.28306,0.8227,0.49299,277.72,#31,0.37644,0.49076,-0.78578,186.96,0.65776,0.45572,0.59973,563.31,0.65242,-0.74261,-0.15125,583.17,#32,0.27592,0.62458,-0.73059,325.47,-0.19449,-0.70809,-0.6788,622.19,-0.9413,0.32939,-0.073904,190.27,#33,-0.3217,-0.63403,0.70322,382.02,0.77969,-0.59877,-0.18317,613.61,0.53721,0.48937,0.68697,199.62,#34,0.45809,0.83061,0.31661,395.06,0.85866,-0.5056,0.084068,575.22,0.22991,0.23335,-0.94482,213.69,#35,-0.81154,-0.22776,0.53807,381.97,-0.49096,-0.23347,-0.83931,612.2,0.31679,-0.94531,0.077644,199.39
    17275 
    17276 > view matrix models
    17277 > #25,0.25016,0.77249,-0.58367,331.76,-0.24968,0.63392,0.73198,480.46,0.93546,-0.037381,0.35146,97.865,#24,0.53376,-0.62737,-0.56702,538.64,0.64664,-0.1293,0.75176,336.68,-0.54495,-0.76791,0.33667,435.22,#26,0.8277,-0.55623,0.074347,336.1,0.32318,0.58077,0.74717,589.76,-0.45878,-0.5944,0.66046,239.5,#27,0.60092,-0.79833,-0.039501,367.25,-0.75228,-0.58158,0.3096,599.1,-0.27013,-0.15633,-0.95005,263.42,#28,0.11271,0.85752,0.50195,379.27,0.72416,-0.41679,0.54944,526.84,0.68036,0.30156,-0.66796,272.23,#29,-0.29088,-0.19304,0.93708,420.37,-0.30086,-0.91129,-0.28112,634.35,0.90823,-0.3637,0.20699,226.63,#30,0.48107,0.49949,-0.72047,392.69,-0.84524,0.046152,-0.53239,615.01,-0.23267,0.86509,0.44439,276.6,#31,0.45871,0.6374,-0.61912,154.9,0.56817,0.32532,0.75588,618.17,0.68321,-0.69849,-0.21292,563.84,#32,0.30094,0.42418,-0.85411,334.13,-0.2644,-0.82341,-0.50209,639.27,-0.91626,0.37693,-0.13564,183.78,#33,-0.18366,-0.78788,0.58781,386.45,0.83927,-0.437,-0.32351,618.57,0.51176,0.43391,0.7415,197.68,#34,0.61643,0.67688,0.4023,389.51,0.73987,-0.67275,-0.0017449,578.46,0.26947,0.29872,-0.91551,212.64,#35,-0.92273,-0.19692,0.33136,386.11,-0.29528,-0.19145,-0.93603,617.2,0.24776,-0.96155,0.11851,197.44
    17278 
    17279 > view matrix models
    17280 > #25,0.54074,0.83707,0.083165,226.88,-0.79606,0.47727,0.37215,599.46,0.27182,-0.26744,0.92444,148.09,#24,0.4121,-0.90597,0.096951,482.91,0.81913,0.41498,0.396,265.24,-0.399,-0.083775,0.91312,143.4,#26,0.52341,-0.44224,0.72833,351.31,0.50042,0.85137,0.15733,594.34,-0.68965,0.28212,0.66692,276.61,#27,-0.038806,-0.92971,-0.36625,390.47,-0.44005,-0.31317,0.8416,584.98,-0.89714,0.19382,-0.39696,273.68,#28,0.75598,0.59053,0.28243,370.74,0.12512,-0.55386,0.82315,522.93,0.64252,-0.58695,-0.4926,238.98,#29,0.10688,-0.7408,0.66317,426.98,-0.79267,-0.46613,-0.39294,632.96,0.60021,-0.48368,-0.63703,231.47,#30,-0.15027,0.82319,-0.54753,423.02,-0.52993,-0.5346,-0.65831,587.74,-0.83462,0.19123,0.51656,271.18,#31,0.93995,0.26407,-0.21625,394.79,-0.013864,0.66258,0.74886,420.07,0.34103,-0.70089,0.62646,603.07,#32,-0.36159,0.12508,-0.92391,344.39,0.35991,-0.89542,-0.26208,667.95,-0.86007,-0.42729,0.27876,266.86,#33,0.50624,-0.5587,0.65694,380.32,0.33482,-0.57468,-0.74675,640.66,0.79474,0.598,-0.10386,230.48,#34,0.92556,0.33978,-0.16697,371.79,0.37284,-0.7415,0.55783,600.03,0.065726,-0.57856,-0.81299,219.6,#35,-0.68667,-0.71621,-0.12459,379.32,-0.341,0.46869,-0.81489,639.77,0.64203,-0.51708,-0.56607,229.97
    17281 
    17282 > ui mousemode right "rotate selected models"
    17283 
    17284 > view matrix models
    17285 > #25,0.56775,0.81372,0.12456,224.78,-0.70969,0.40715,0.57495,580.66,0.41713,-0.41483,0.80865,162.63,#24,0.37667,-0.91611,0.13733,485.95,0.70757,0.38021,0.59563,255.54,-0.59788,-0.12718,0.79143,220.71,#26,0.47824,-0.44163,0.75911,355.77,0.33116,0.89124,0.30987,605.8,-0.8134,0.1032,0.57248,281.94,#27,-0.077684,-0.91287,-0.40079,394.88,-0.63455,-0.2648,0.72611,596.21,-0.76897,0.31073,-0.55869,279.1,#28,0.78602,0.56876,0.24227,374.45,0.27305,-0.67099,0.68935,527.75,0.55464,-0.47569,-0.68271,260.66,#29,0.15151,-0.75674,0.63592,428.33,-0.63307,-0.56837,-0.52553,633.39,0.75913,-0.32295,-0.56518,225.1,#30,-0.18419,0.84109,-0.50857,427.21,-0.70821,-0.47236,-0.52471,598.48,-0.68156,0.26353,0.68267,274.27,#31,0.95647,0.21591,-0.19635,419.12,0.069427,0.48514,0.87168,511.39,0.28346,-0.84736,0.44903,636.78,#32,-0.41186,0.11817,-0.90355,347.09,0.15095,-0.96901,-0.19553,675.17,-0.89866,-0.21692,0.38126,255.97,#33,0.54093,-0.51695,0.66345,381.55,0.51089,-0.42466,-0.74743,640.43,0.66812,0.74326,0.034395,224.91,#34,0.92116,0.32205,-0.2185,373.17,0.38248,-0.85291,0.35534,598.34,-0.071924,-0.41089,-0.90884,224.11,#35,-0.64647,-0.75004,-0.13971,380.54,-0.18774,0.33388,-0.92373,639.43,0.73948,-0.57093,-0.35666,224.68
    17286 
    17287 > ui mousemode right "translate selected models"
    17288 
    17289 > view matrix models
    17290 > #25,0.56775,0.81372,0.12456,158.31,-0.70969,0.40715,0.57495,456.38,0.41713,-0.41483,0.80865,180.62,#24,0.37667,-0.91611,0.13733,419.48,0.70757,0.38021,0.59563,131.26,-0.59788,-0.12718,0.79143,238.7,#26,0.47824,-0.44163,0.75911,289.3,0.33116,0.89124,0.30987,481.52,-0.8134,0.1032,0.57248,299.92,#27,-0.077684,-0.91287,-0.40079,328.41,-0.63455,-0.2648,0.72611,471.93,-0.76897,0.31073,-0.55869,297.09,#28,0.78602,0.56876,0.24227,307.98,0.27305,-0.67099,0.68935,403.47,0.55464,-0.47569,-0.68271,278.65,#29,0.15151,-0.75674,0.63592,361.86,-0.63307,-0.56837,-0.52553,509.11,0.75913,-0.32295,-0.56518,243.09,#30,-0.18419,0.84109,-0.50857,360.74,-0.70821,-0.47236,-0.52471,474.2,-0.68156,0.26353,0.68267,292.26,#31,0.95647,0.21591,-0.19635,352.65,0.069427,0.48514,0.87168,387.11,0.28346,-0.84736,0.44903,654.76,#32,-0.41186,0.11817,-0.90355,280.62,0.15095,-0.96901,-0.19553,550.89,-0.89866,-0.21692,0.38126,273.96,#33,0.54093,-0.51695,0.66345,315.08,0.51089,-0.42466,-0.74743,516.14,0.66812,0.74326,0.034395,242.9,#34,0.92116,0.32205,-0.2185,306.7,0.38248,-0.85291,0.35534,474.06,-0.071924,-0.41089,-0.90884,242.1,#35,-0.64647,-0.75004,-0.13971,314.08,-0.18774,0.33388,-0.92373,515.15,0.73948,-0.57093,-0.35666,242.66
    17291 
    17292 > view matrix models
    17293 > #25,0.56775,0.81372,0.12456,157.25,-0.70969,0.40715,0.57495,457.09,0.41713,-0.41483,0.80865,180.37,#24,0.37667,-0.91611,0.13733,418.42,0.70757,0.38021,0.59563,131.97,-0.59788,-0.12718,0.79143,238.45,#26,0.47824,-0.44163,0.75911,288.25,0.33116,0.89124,0.30987,482.23,-0.8134,0.1032,0.57248,299.68,#27,-0.077684,-0.91287,-0.40079,327.36,-0.63455,-0.2648,0.72611,472.64,-0.76897,0.31073,-0.55869,296.84,#28,0.78602,0.56876,0.24227,306.93,0.27305,-0.67099,0.68935,404.18,0.55464,-0.47569,-0.68271,278.41,#29,0.15151,-0.75674,0.63592,360.8,-0.63307,-0.56837,-0.52553,509.82,0.75913,-0.32295,-0.56518,242.84,#30,-0.18419,0.84109,-0.50857,359.69,-0.70821,-0.47236,-0.52471,474.91,-0.68156,0.26353,0.68267,292.01,#31,0.95647,0.21591,-0.19635,351.59,0.069427,0.48514,0.87168,387.82,0.28346,-0.84736,0.44903,654.52,#32,-0.41186,0.11817,-0.90355,279.57,0.15095,-0.96901,-0.19553,551.6,-0.89866,-0.21692,0.38126,273.71,#33,0.54093,-0.51695,0.66345,314.02,0.51089,-0.42466,-0.74743,516.85,0.66812,0.74326,0.034395,242.65,#34,0.92116,0.32205,-0.2185,305.64,0.38248,-0.85291,0.35534,474.77,-0.071924,-0.41089,-0.90884,241.85,#35,-0.64647,-0.75004,-0.13971,313.02,-0.18774,0.33388,-0.92373,515.86,0.73948,-0.57093,-0.35666,242.42
    17294 
    17295 > view matrix models
    17296 > #25,0.56775,0.81372,0.12456,121.78,-0.70969,0.40715,0.57495,438.32,0.41713,-0.41483,0.80865,193.07,#24,0.37667,-0.91611,0.13733,382.95,0.70757,0.38021,0.59563,113.21,-0.59788,-0.12718,0.79143,251.15,#26,0.47824,-0.44163,0.75911,252.77,0.33116,0.89124,0.30987,463.47,-0.8134,0.1032,0.57248,312.37,#27,-0.077684,-0.91287,-0.40079,291.88,-0.63455,-0.2648,0.72611,453.87,-0.76897,0.31073,-0.55869,309.53,#28,0.78602,0.56876,0.24227,271.46,0.27305,-0.67099,0.68935,385.42,0.55464,-0.47569,-0.68271,291.1,#29,0.15151,-0.75674,0.63592,325.33,-0.63307,-0.56837,-0.52553,491.05,0.75913,-0.32295,-0.56518,255.53,#30,-0.18419,0.84109,-0.50857,324.21,-0.70821,-0.47236,-0.52471,456.15,-0.68156,0.26353,0.68267,304.71,#31,0.95647,0.21591,-0.19635,316.12,0.069427,0.48514,0.87168,369.06,0.28346,-0.84736,0.44903,667.21,#32,-0.41186,0.11817,-0.90355,244.1,0.15095,-0.96901,-0.19553,532.83,-0.89866,-0.21692,0.38126,286.41,#33,0.54093,-0.51695,0.66345,278.55,0.51089,-0.42466,-0.74743,498.09,0.66812,0.74326,0.034395,255.35,#34,0.92116,0.32205,-0.2185,270.17,0.38248,-0.85291,0.35534,456.01,-0.071924,-0.41089,-0.90884,254.55,#35,-0.64647,-0.75004,-0.13971,277.55,-0.18774,0.33388,-0.92373,497.1,0.73948,-0.57093,-0.35666,255.11
    17297 
    17298 > view matrix models
    17299 > #25,0.56775,0.81372,0.12456,100.72,-0.70969,0.40715,0.57495,427.82,0.41713,-0.41483,0.80865,200.35,#24,0.37667,-0.91611,0.13733,361.89,0.70757,0.38021,0.59563,102.71,-0.59788,-0.12718,0.79143,258.43,#26,0.47824,-0.44163,0.75911,231.72,0.33116,0.89124,0.30987,452.97,-0.8134,0.1032,0.57248,319.66,#27,-0.077684,-0.91287,-0.40079,270.83,-0.63455,-0.2648,0.72611,443.37,-0.76897,0.31073,-0.55869,316.82,#28,0.78602,0.56876,0.24227,250.4,0.27305,-0.67099,0.68935,374.92,0.55464,-0.47569,-0.68271,298.39,#29,0.15151,-0.75674,0.63592,304.27,-0.63307,-0.56837,-0.52553,480.55,0.75913,-0.32295,-0.56518,262.82,#30,-0.18419,0.84109,-0.50857,303.16,-0.70821,-0.47236,-0.52471,445.65,-0.68156,0.26353,0.68267,311.99,#31,0.95647,0.21591,-0.19635,295.06,0.069427,0.48514,0.87168,358.56,0.28346,-0.84736,0.44903,674.5,#32,-0.41186,0.11817,-0.90355,223.04,0.15095,-0.96901,-0.19553,522.34,-0.89866,-0.21692,0.38126,293.7,#33,0.54093,-0.51695,0.66345,257.49,0.51089,-0.42466,-0.74743,487.59,0.66812,0.74326,0.034395,262.64,#34,0.92116,0.32205,-0.2185,249.11,0.38248,-0.85291,0.35534,445.51,-0.071924,-0.41089,-0.90884,261.83,#35,-0.64647,-0.75004,-0.13971,256.49,-0.18774,0.33388,-0.92373,486.6,0.73948,-0.57093,-0.35666,262.4
    17300 
    17301 > select subtract #26
    17302 
    17303 31014 atoms, 31550 bonds, 1 pseudobond, 3912 residues, 14 models selected 
    17304 
    17305 > select add #26
    17306 
    17307 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 15 models selected 
    17308 
    17309 > hide #26 models
    17310 
    17311 > hide #27 models
    17312 
    17313 > hide #28 models
    17314 
    17315 > hide #29 models
    17316 
    17317 > hide #30 models
    17318 
    17319 > hide #31 models
    17320 
    17321 > hide #!32 models
    17322 
    17323 > hide #33 models
    17324 
    17325 > hide #34 models
    17326 
    17327 > hide #35 models
    17328 
    17329 > color #24 #ff2600ff models
    17330 
    17331 > view matrix models
    17332 > #25,0.56775,0.81372,0.12456,120.98,-0.70969,0.40715,0.57495,425.68,0.41713,-0.41483,0.80865,198.46,#24,0.37667,-0.91611,0.13733,382.14,0.70757,0.38021,0.59563,100.56,-0.59788,-0.12718,0.79143,256.54,#26,0.47824,-0.44163,0.75911,251.97,0.33116,0.89124,0.30987,450.82,-0.8134,0.1032,0.57248,317.77,#27,-0.077684,-0.91287,-0.40079,291.08,-0.63455,-0.2648,0.72611,441.23,-0.76897,0.31073,-0.55869,314.93,#28,0.78602,0.56876,0.24227,270.65,0.27305,-0.67099,0.68935,372.77,0.55464,-0.47569,-0.68271,296.5,#29,0.15151,-0.75674,0.63592,324.52,-0.63307,-0.56837,-0.52553,478.4,0.75913,-0.32295,-0.56518,260.93,#30,-0.18419,0.84109,-0.50857,323.41,-0.70821,-0.47236,-0.52471,443.5,-0.68156,0.26353,0.68267,310.1,#31,0.95647,0.21591,-0.19635,315.32,0.069427,0.48514,0.87168,356.41,0.28346,-0.84736,0.44903,672.61,#32,-0.41186,0.11817,-0.90355,243.29,0.15095,-0.96901,-0.19553,520.19,-0.89866,-0.21692,0.38126,291.81,#33,0.54093,-0.51695,0.66345,277.75,0.51089,-0.42466,-0.74743,485.44,0.66812,0.74326,0.034395,260.75,#34,0.92116,0.32205,-0.2185,269.36,0.38248,-0.85291,0.35534,443.36,-0.071924,-0.41089,-0.90884,259.94,#35,-0.64647,-0.75004,-0.13971,276.74,-0.18774,0.33388,-0.92373,484.45,0.73948,-0.57093,-0.35666,260.51
    17333 
    17334 > view matrix models
    17335 > #25,0.56775,0.81372,0.12456,133.04,-0.70969,0.40715,0.57495,478.96,0.41713,-0.41483,0.80865,180.59,#24,0.37667,-0.91611,0.13733,394.21,0.70757,0.38021,0.59563,153.84,-0.59788,-0.12718,0.79143,238.67,#26,0.47824,-0.44163,0.75911,264.03,0.33116,0.89124,0.30987,504.1,-0.8134,0.1032,0.57248,299.89,#27,-0.077684,-0.91287,-0.40079,303.14,-0.63455,-0.2648,0.72611,494.51,-0.76897,0.31073,-0.55869,297.05,#28,0.78602,0.56876,0.24227,282.71,0.27305,-0.67099,0.68935,426.05,0.55464,-0.47569,-0.68271,278.62,#29,0.15151,-0.75674,0.63592,336.59,-0.63307,-0.56837,-0.52553,531.69,0.75913,-0.32295,-0.56518,243.05,#30,-0.18419,0.84109,-0.50857,335.47,-0.70821,-0.47236,-0.52471,496.78,-0.68156,0.26353,0.68267,292.23,#31,0.95647,0.21591,-0.19635,327.38,0.069427,0.48514,0.87168,409.69,0.28346,-0.84736,0.44903,654.73,#32,-0.41186,0.11817,-0.90355,255.36,0.15095,-0.96901,-0.19553,573.47,-0.89866,-0.21692,0.38126,273.93,#33,0.54093,-0.51695,0.66345,289.81,0.51089,-0.42466,-0.74743,538.72,0.66812,0.74326,0.034395,242.87,#34,0.92116,0.32205,-0.2185,281.43,0.38248,-0.85291,0.35534,496.64,-0.071924,-0.41089,-0.90884,242.07,#35,-0.64647,-0.75004,-0.13971,288.81,-0.18774,0.33388,-0.92373,537.73,0.73948,-0.57093,-0.35666,242.63
    17336 
    17337 > ui mousemode right "rotate selected models"
    17338 
    17339 > view matrix models
    17340 > #25,0.31393,0.69197,-0.6501,252.34,-0.12626,0.70906,0.69375,361.81,0.94101,-0.13571,0.30997,132.62,#24,0.43359,-0.63792,-0.63644,487.56,0.64472,-0.27382,0.71369,276.12,-0.62955,-0.71977,0.29255,471.16,#26,0.76611,-0.64257,0.013391,249.58,0.36612,0.45344,0.81262,484.42,-0.52824,-0.61765,0.58264,262.95,#27,0.67276,-0.73128,-0.11235,280.36,-0.70383,-0.67939,0.20749,499.49,-0.22806,-0.060516,-0.97176,284.28,#28,0.054909,0.91114,0.40842,301,0.79611,-0.28683,0.53286,430.26,0.60266,0.29588,-0.74112,299.24,#29,-0.21821,-0.10056,0.97071,327.56,-0.23975,-0.95867,-0.1532,536.61,0.94599,-0.26616,0.18508,241.71,#30,0.56603,0.52443,-0.63607,304.29,-0.80537,0.18702,-0.56249,519.36,-0.17603,0.83066,0.52823,294.61,#31,0.41646,0.56756,-0.71024,79.208,0.68063,0.32329,0.65744,524.53,0.60275,-0.75721,-0.25166,591.89,#32,0.29322,0.53101,-0.79502,239.72,-0.31888,-0.72963,-0.60494,527.63,-0.9013,0.4309,-0.044618,202.98,#33,-0.25918,-0.71441,0.64996,294.58,0.86023,-0.47671,-0.18095,514.36,0.43911,0.51222,0.73811,216.12,#34,0.53689,0.76133,0.36349,302.85,0.82691,-0.56031,-0.047804,476.53,0.16727,0.32624,-0.93037,234.61,#35,-0.87195,-0.21112,0.44174,294.39,-0.37004,-0.30661,-0.87696,512.95,0.32059,-0.92812,0.18923,216.03
    17341 
    17342 > view matrix models
    17343 > #25,0.23101,0.91523,-0.33013,200.8,-0.83636,0.36017,0.41325,514.99,0.49713,0.18064,0.84867,87.81,#24,0.65679,-0.68759,-0.30961,380.72,0.7409,0.512,0.43464,153.53,-0.14033,-0.51486,0.84571,207.22,#26,0.85306,-0.40862,0.32453,244.97,0.39498,0.91206,0.11014,502.93,-0.341,0.034228,0.93944,260.81,#27,0.3463,-0.93803,-0.01344,279,-0.48415,-0.19097,0.85389,488.92,-0.80354,-0.2892,-0.52028,277.4,#28,0.35611,0.72387,0.59093,270.8,0.073566,-0.65214,0.75452,427.67,0.93154,-0.22522,-0.28549,237.1,#29,-0.30319,-0.46473,0.83193,337.34,-0.76333,-0.40416,-0.50397,529.77,0.57044,-0.78783,-0.2322,258.84,#30,0.20791,0.54819,-0.8101,308.69,-0.55664,-0.6147,-0.55883,487.72,-0.80432,0.56712,0.17735,291.22,#31,0.64378,0.65567,-0.39453,100.82,-0.10325,0.5853,0.80422,344.13,0.75822,-0.477,0.44449,565.5,#32,0.15354,0.19971,-0.96775,253.32,0.34873,-0.9273,-0.13604,576.15,-0.92456,-0.3166,-0.21202,249.39,#33,0.093561,-0.84854,0.52079,298.52,0.31943,-0.46985,-0.82293,542.78,0.94298,0.24335,0.22709,235.14,#34,0.81577,0.47884,0.32441,291.17,0.26577,-0.8085,0.52506,502.85,0.5137,-0.34211,-0.78681,221.21,#35,-0.95011,-0.30565,0.062186,297.8,-0.2207,0.51789,-0.82649,541.98,0.22041,-0.79898,-0.55951,234.2
    17344 
    17345 > ui mousemode right "translate selected models"
    17346 
    17347 > view matrix models
    17348 > #25,0.23101,0.91523,-0.33013,208.08,-0.83636,0.36017,0.41325,475.99,0.49713,0.18064,0.84867,105.89,#24,0.65679,-0.68759,-0.30961,388,0.7409,0.512,0.43464,114.53,-0.14033,-0.51486,0.84571,225.31,#26,0.85306,-0.40862,0.32453,252.25,0.39498,0.91206,0.11014,463.93,-0.341,0.034228,0.93944,278.89,#27,0.3463,-0.93803,-0.01344,286.28,-0.48415,-0.19097,0.85389,449.92,-0.80354,-0.2892,-0.52028,295.49,#28,0.35611,0.72387,0.59093,278.08,0.073566,-0.65214,0.75452,388.67,0.93154,-0.22522,-0.28549,255.18,#29,-0.30319,-0.46473,0.83193,344.62,-0.76333,-0.40416,-0.50397,490.78,0.57044,-0.78783,-0.2322,276.93,#30,0.20791,0.54819,-0.8101,315.97,-0.55664,-0.6147,-0.55883,448.72,-0.80432,0.56712,0.17735,309.3,#31,0.64378,0.65567,-0.39453,108.1,-0.10325,0.5853,0.80422,305.13,0.75822,-0.477,0.44449,583.59,#32,0.15354,0.19971,-0.96775,260.6,0.34873,-0.9273,-0.13604,537.15,-0.92456,-0.3166,-0.21202,267.47,#33,0.093561,-0.84854,0.52079,305.8,0.31943,-0.46985,-0.82293,503.78,0.94298,0.24335,0.22709,253.22,#34,0.81577,0.47884,0.32441,298.45,0.26577,-0.8085,0.52506,463.86,0.5137,-0.34211,-0.78681,239.29,#35,-0.95011,-0.30565,0.062186,305.08,-0.2207,0.51789,-0.82649,502.98,0.22041,-0.79898,-0.55951,252.28
    17349 
    17350 > view matrix models
    17351 > #25,0.23101,0.91523,-0.33013,212.69,-0.83636,0.36017,0.41325,496.36,0.49713,0.18064,0.84867,105.06,#24,0.65679,-0.68759,-0.30961,392.61,0.7409,0.512,0.43464,134.91,-0.14033,-0.51486,0.84571,224.47,#26,0.85306,-0.40862,0.32453,256.86,0.39498,0.91206,0.11014,484.3,-0.341,0.034228,0.93944,278.05,#27,0.3463,-0.93803,-0.01344,290.89,-0.48415,-0.19097,0.85389,470.29,-0.80354,-0.2892,-0.52028,294.65,#28,0.35611,0.72387,0.59093,282.69,0.073566,-0.65214,0.75452,409.04,0.93154,-0.22522,-0.28549,254.35,#29,-0.30319,-0.46473,0.83193,349.23,-0.76333,-0.40416,-0.50397,511.15,0.57044,-0.78783,-0.2322,276.09,#30,0.20791,0.54819,-0.8101,320.58,-0.55664,-0.6147,-0.55883,469.1,-0.80432,0.56712,0.17735,308.47,#31,0.64378,0.65567,-0.39453,112.71,-0.10325,0.5853,0.80422,325.5,0.75822,-0.477,0.44449,582.75,#32,0.15354,0.19971,-0.96775,265.22,0.34873,-0.9273,-0.13604,557.52,-0.92456,-0.3166,-0.21202,266.63,#33,0.093561,-0.84854,0.52079,310.41,0.31943,-0.46985,-0.82293,524.15,0.94298,0.24335,0.22709,252.38,#34,0.81577,0.47884,0.32441,303.06,0.26577,-0.8085,0.52506,484.23,0.5137,-0.34211,-0.78681,238.46,#35,-0.95011,-0.30565,0.062186,309.69,-0.2207,0.51789,-0.82649,523.36,0.22041,-0.79898,-0.55951,251.45
    17352 
    17353 > view matrix models
    17354 > #25,0.23101,0.91523,-0.33013,233.2,-0.83636,0.36017,0.41325,485.63,0.49713,0.18064,0.84867,114.46,#24,0.65679,-0.68759,-0.30961,413.12,0.7409,0.512,0.43464,124.18,-0.14033,-0.51486,0.84571,233.87,#26,0.85306,-0.40862,0.32453,277.37,0.39498,0.91206,0.11014,473.58,-0.341,0.034228,0.93944,287.45,#27,0.3463,-0.93803,-0.01344,311.4,-0.48415,-0.19097,0.85389,459.56,-0.80354,-0.2892,-0.52028,304.05,#28,0.35611,0.72387,0.59093,303.2,0.073566,-0.65214,0.75452,398.32,0.93154,-0.22522,-0.28549,263.75,#29,-0.30319,-0.46473,0.83193,369.73,-0.76333,-0.40416,-0.50397,500.42,0.57044,-0.78783,-0.2322,285.49,#30,0.20791,0.54819,-0.8101,341.09,-0.55664,-0.6147,-0.55883,458.37,-0.80432,0.56712,0.17735,317.87,#31,0.64378,0.65567,-0.39453,133.22,-0.10325,0.5853,0.80422,314.78,0.75822,-0.477,0.44449,592.15,#32,0.15354,0.19971,-0.96775,285.72,0.34873,-0.9273,-0.13604,546.79,-0.92456,-0.3166,-0.21202,276.03,#33,0.093561,-0.84854,0.52079,330.92,0.31943,-0.46985,-0.82293,513.43,0.94298,0.24335,0.22709,261.78,#34,0.81577,0.47884,0.32441,323.57,0.26577,-0.8085,0.52506,473.5,0.5137,-0.34211,-0.78681,247.86,#35,-0.95011,-0.30565,0.062186,330.19,-0.2207,0.51789,-0.82649,512.63,0.22041,-0.79898,-0.55951,260.85
    17355 
    17356 > view matrix models
    17357 > #25,0.23101,0.91523,-0.33013,226.85,-0.83636,0.36017,0.41325,478.83,0.49713,0.18064,0.84867,120.73,#24,0.65679,-0.68759,-0.30961,406.77,0.7409,0.512,0.43464,117.38,-0.14033,-0.51486,0.84571,240.14,#26,0.85306,-0.40862,0.32453,271.02,0.39498,0.91206,0.11014,466.77,-0.341,0.034228,0.93944,293.72,#27,0.3463,-0.93803,-0.01344,305.05,-0.48415,-0.19097,0.85389,452.76,-0.80354,-0.2892,-0.52028,310.32,#28,0.35611,0.72387,0.59093,296.85,0.073566,-0.65214,0.75452,391.51,0.93154,-0.22522,-0.28549,270.02,#29,-0.30319,-0.46473,0.83193,363.39,-0.76333,-0.40416,-0.50397,493.62,0.57044,-0.78783,-0.2322,291.76,#30,0.20791,0.54819,-0.8101,334.74,-0.55664,-0.6147,-0.55883,451.57,-0.80432,0.56712,0.17735,324.14,#31,0.64378,0.65567,-0.39453,126.87,-0.10325,0.5853,0.80422,307.97,0.75822,-0.477,0.44449,598.42,#32,0.15354,0.19971,-0.96775,279.38,0.34873,-0.9273,-0.13604,539.99,-0.92456,-0.3166,-0.21202,282.3,#33,0.093561,-0.84854,0.52079,324.57,0.31943,-0.46985,-0.82293,506.62,0.94298,0.24335,0.22709,268.05,#34,0.81577,0.47884,0.32441,317.22,0.26577,-0.8085,0.52506,466.7,0.5137,-0.34211,-0.78681,254.13,#35,-0.95011,-0.30565,0.062186,323.85,-0.2207,0.51789,-0.82649,505.83,0.22041,-0.79898,-0.55951,267.12
    17358 
    17359 > ui mousemode right "rotate selected models"
    17360 
    17361 > view matrix models
    17362 > #25,0.31872,0.78454,-0.53189,254.04,-0.79899,0.52427,0.29453,464.05,0.50993,0.33111,0.79394,104.36,#24,0.50551,-0.69156,-0.51596,483.68,0.86262,0.39203,0.31969,139.61,-0.01881,-0.60668,0.79473,243.25,#26,0.7962,-0.5863,0.14938,273.07,0.57344,0.81,0.12272,451.91,-0.19295,-0.012046,0.98114,281.88,#27,0.55516,-0.82465,-0.10834,306.32,-0.36309,-0.35748,0.86045,444.06,-0.7483,-0.43835,-0.49788,303.37,#28,0.18857,0.86714,0.46098,316.97,0.093587,-0.48313,0.87053,384.6,0.97759,-0.12102,-0.17226,261.01,#29,-0.22397,-0.24799,0.94252,357.23,-0.83714,-0.44623,-0.31634,496.57,0.49903,-0.85987,-0.10767,295.17,#30,0.43619,0.56976,-0.6965,333.2,-0.46141,-0.5229,-0.71671,448.04,-0.77255,0.63399,0.034808,321.7,#31,0.52907,0.58705,-0.61274,119.91,-0.013408,0.72777,0.68569,251.92,0.84847,-0.35456,0.39291,556.45,#32,0.21727,0.43004,-0.87627,267.95,0.42031,-0.85145,-0.31365,525.82,-0.88099,-0.30016,-0.36574,273.46,#33,-0.11722,-0.76181,0.63711,320.62,0.28165,-0.6407,-0.71427,502.86,0.95233,0.095715,0.28966,265.87,#34,0.6572,0.67968,0.32577,323.76,0.39469,-0.67856,0.6195,463.06,0.64211,-0.27855,-0.71421,250.13,#35,-0.90736,-0.28035,0.31321,320.22,-0.41574,0.48835,-0.76725,501.99,0.062144,-0.82639,-0.55966,264.82
    17363 
    17364 > view matrix models
    17365 > #25,0.31322,0.81558,-0.48653,246.12,-0.79151,0.50729,0.34083,461.03,0.52479,0.27834,0.80444,108.77,#24,0.53327,-0.70355,-0.46973,470.4,0.84291,0.39494,0.36541,133.69,-0.071571,-0.5908,0.80364,249.57,#26,0.80611,-0.55837,0.196,272.42,0.53767,0.82942,0.15154,454.44,-0.24718,-0.016777,0.96882,285.66,#27,0.50942,-0.85462,-0.10055,306.29,-0.40853,-0.34303,0.84583,446.16,-0.75736,-0.3898,-0.52389,306,#28,0.23398,0.84412,0.48241,313.06,0.12093,-0.5176,0.84704,384.92,0.96469,-0.13986,-0.22319,265.42,#29,-0.23041,-0.30019,0.92563,358.55,-0.8107,-0.46691,-0.35322,496.52,0.53822,-0.83179,-0.13579,293.74,#30,0.38622,0.57867,-0.71832,334.06,-0.50335,-0.52036,-0.68983,449.83,-0.77296,0.62799,0.090295,323.02,#31,0.5647,0.5955,-0.57139,124.63,-0.002552,0.6936,0.72035,269.74,0.82529,-0.40533,0.3932,573.56,#32,0.19293,0.38736,-0.90152,269.46,0.38127,-0.87617,-0.29488,528.15,-0.90411,-0.28683,-0.31672,274.78,#33,-0.06604,-0.77828,0.62443,320.94,0.31875,-0.60946,-0.72592,503.08,0.94554,0.1511,0.28832,265.81,#34,0.69755,0.64344,0.3153,322.03,0.39327,-0.71162,0.58218,462.67,0.59897,-0.2821,-0.74944,251.41,#35,-0.91742,-0.29924,0.26229,320.47,-0.38078,0.46883,-0.797,502.18,0.11553,-0.83105,-0.54406,264.81
    17366 
    17367 > ui mousemode right "translate selected models"
    17368 
    17369 > view matrix models
    17370 > #25,0.31322,0.81558,-0.48653,226.44,-0.79151,0.50729,0.34083,473.07,0.52479,0.27834,0.80444,98.168,#24,0.53327,-0.70355,-0.46973,450.73,0.84291,0.39494,0.36541,145.73,-0.071571,-0.5908,0.80364,238.97,#26,0.80611,-0.55837,0.196,252.74,0.53767,0.82942,0.15154,466.48,-0.24718,-0.016777,0.96882,275.06,#27,0.50942,-0.85462,-0.10055,286.62,-0.40853,-0.34303,0.84583,458.2,-0.75736,-0.3898,-0.52389,295.4,#28,0.23398,0.84412,0.48241,293.38,0.12093,-0.5176,0.84704,396.96,0.96469,-0.13986,-0.22319,254.81,#29,-0.23041,-0.30019,0.92563,338.88,-0.8107,-0.46691,-0.35322,508.56,0.53822,-0.83179,-0.13579,283.14,#30,0.38622,0.57867,-0.71832,314.38,-0.50335,-0.52036,-0.68983,461.87,-0.77296,0.62799,0.090295,312.41,#31,0.5647,0.5955,-0.57139,104.96,-0.002552,0.6936,0.72035,281.78,0.82529,-0.40533,0.3932,562.96,#32,0.19293,0.38736,-0.90152,249.78,0.38127,-0.87617,-0.29488,540.19,-0.90411,-0.28683,-0.31672,264.17,#33,-0.06604,-0.77828,0.62443,301.26,0.31875,-0.60946,-0.72592,515.12,0.94554,0.1511,0.28832,255.21,#34,0.69755,0.64344,0.3153,302.35,0.39327,-0.71162,0.58218,474.71,0.59897,-0.2821,-0.74944,240.81,#35,-0.91742,-0.29924,0.26229,300.79,-0.38078,0.46883,-0.797,514.22,0.11553,-0.83105,-0.54406,254.2
    17371 
    17372 > view matrix models
    17373 > #25,0.31322,0.81558,-0.48653,252.03,-0.79151,0.50729,0.34083,484.65,0.52479,0.27834,0.80444,84.922,#24,0.53327,-0.70355,-0.46973,476.32,0.84291,0.39494,0.36541,157.31,-0.071571,-0.5908,0.80364,225.72,#26,0.80611,-0.55837,0.196,278.34,0.53767,0.82942,0.15154,478.05,-0.24718,-0.016777,0.96882,261.81,#27,0.50942,-0.85462,-0.10055,312.21,-0.40853,-0.34303,0.84583,469.78,-0.75736,-0.3898,-0.52389,282.15,#28,0.23398,0.84412,0.48241,318.97,0.12093,-0.5176,0.84704,408.54,0.96469,-0.13986,-0.22319,241.57,#29,-0.23041,-0.30019,0.92563,364.47,-0.8107,-0.46691,-0.35322,520.14,0.53822,-0.83179,-0.13579,269.89,#30,0.38622,0.57867,-0.71832,339.97,-0.50335,-0.52036,-0.68983,473.44,-0.77296,0.62799,0.090295,299.17,#31,0.5647,0.5955,-0.57139,130.55,-0.002552,0.6936,0.72035,293.36,0.82529,-0.40533,0.3932,549.71,#32,0.19293,0.38736,-0.90152,275.38,0.38127,-0.87617,-0.29488,551.76,-0.90411,-0.28683,-0.31672,250.93,#33,-0.06604,-0.77828,0.62443,326.86,0.31875,-0.60946,-0.72592,526.7,0.94554,0.1511,0.28832,241.96,#34,0.69755,0.64344,0.3153,327.95,0.39327,-0.71162,0.58218,486.28,0.59897,-0.2821,-0.74944,227.56,#35,-0.91742,-0.29924,0.26229,326.38,-0.38078,0.46883,-0.797,525.8,0.11553,-0.83105,-0.54406,240.96
    17374 
    17375 > view matrix models
    17376 > #25,0.31322,0.81558,-0.48653,254.82,-0.79151,0.50729,0.34083,480.68,0.52479,0.27834,0.80444,104.69,#24,0.53327,-0.70355,-0.46973,479.1,0.84291,0.39494,0.36541,153.33,-0.071571,-0.5908,0.80364,245.49,#26,0.80611,-0.55837,0.196,281.12,0.53767,0.82942,0.15154,474.08,-0.24718,-0.016777,0.96882,281.58,#27,0.50942,-0.85462,-0.10055,315,-0.40853,-0.34303,0.84583,465.8,-0.75736,-0.3898,-0.52389,301.92,#28,0.23398,0.84412,0.48241,321.76,0.12093,-0.5176,0.84704,404.56,0.96469,-0.13986,-0.22319,261.34,#29,-0.23041,-0.30019,0.92563,367.25,-0.8107,-0.46691,-0.35322,516.16,0.53822,-0.83179,-0.13579,289.66,#30,0.38622,0.57867,-0.71832,342.76,-0.50335,-0.52036,-0.68983,469.47,-0.77296,0.62799,0.090295,318.94,#31,0.5647,0.5955,-0.57139,133.34,-0.002552,0.6936,0.72035,289.38,0.82529,-0.40533,0.3932,569.48,#32,0.19293,0.38736,-0.90152,278.16,0.38127,-0.87617,-0.29488,547.79,-0.90411,-0.28683,-0.31672,270.7,#33,-0.06604,-0.77828,0.62443,329.64,0.31875,-0.60946,-0.72592,522.72,0.94554,0.1511,0.28832,261.74,#34,0.69755,0.64344,0.3153,330.73,0.39327,-0.71162,0.58218,482.31,0.59897,-0.2821,-0.74944,247.33,#35,-0.91742,-0.29924,0.26229,329.17,-0.38078,0.46883,-0.797,521.82,0.11553,-0.83105,-0.54406,260.73
    17377 
    17378 > view matrix models
    17379 > #25,0.31322,0.81558,-0.48653,13.603,-0.79151,0.50729,0.34083,438.49,0.52479,0.27834,0.80444,-106.13,#24,0.53327,-0.70355,-0.46973,237.89,0.84291,0.39494,0.36541,111.14,-0.071571,-0.5908,0.80364,34.665,#26,0.80611,-0.55837,0.196,39.905,0.53767,0.82942,0.15154,431.89,-0.24718,-0.016777,0.96882,70.756,#27,0.50942,-0.85462,-0.10055,73.781,-0.40853,-0.34303,0.84583,423.62,-0.75736,-0.3898,-0.52389,91.095,#28,0.23398,0.84412,0.48241,80.545,0.12093,-0.5176,0.84704,362.37,0.96469,-0.13986,-0.22319,50.513,#29,-0.23041,-0.30019,0.92563,126.04,-0.8107,-0.46691,-0.35322,473.97,0.53822,-0.83179,-0.13579,78.836,#30,0.38622,0.57867,-0.71832,101.54,-0.50335,-0.52036,-0.68983,427.28,-0.77296,0.62799,0.090295,108.11,#31,0.5647,0.5955,-0.57139,-107.88,-0.002552,0.6936,0.72035,247.2,0.82529,-0.40533,0.3932,358.66,#32,0.19293,0.38736,-0.90152,36.945,0.38127,-0.87617,-0.29488,505.6,-0.90411,-0.28683,-0.31672,59.87,#33,-0.06604,-0.77828,0.62443,88.426,0.31875,-0.60946,-0.72592,480.53,0.94554,0.1511,0.28832,50.907,#34,0.69755,0.64344,0.3153,89.517,0.39327,-0.71162,0.58218,440.12,0.59897,-0.2821,-0.74944,36.506,#35,-0.91742,-0.29924,0.26229,87.953,-0.38078,0.46883,-0.797,479.63,0.11553,-0.83105,-0.54406,49.9
    17380 
    17381 > show #26 models
    17382 
    17383 > view matrix models
    17384 > #25,0.31322,0.81558,-0.48653,64.977,-0.79151,0.50729,0.34083,426.13,0.52479,0.27834,0.80444,12.694,#24,0.53327,-0.70355,-0.46973,289.26,0.84291,0.39494,0.36541,98.788,-0.071571,-0.5908,0.80364,153.49,#26,0.80611,-0.55837,0.196,91.279,0.53767,0.82942,0.15154,419.53,-0.24718,-0.016777,0.96882,189.58,#27,0.50942,-0.85462,-0.10055,125.16,-0.40853,-0.34303,0.84583,411.26,-0.75736,-0.3898,-0.52389,209.92,#28,0.23398,0.84412,0.48241,131.92,0.12093,-0.5176,0.84704,350.02,0.96469,-0.13986,-0.22319,169.34,#29,-0.23041,-0.30019,0.92563,177.41,-0.8107,-0.46691,-0.35322,461.62,0.53822,-0.83179,-0.13579,197.66,#30,0.38622,0.57867,-0.71832,152.92,-0.50335,-0.52036,-0.68983,414.92,-0.77296,0.62799,0.090295,226.94,#31,0.5647,0.5955,-0.57139,-56.506,-0.002552,0.6936,0.72035,234.84,0.82529,-0.40533,0.3932,477.48,#32,0.19293,0.38736,-0.90152,88.319,0.38127,-0.87617,-0.29488,493.24,-0.90411,-0.28683,-0.31672,178.7,#33,-0.06604,-0.77828,0.62443,139.8,0.31875,-0.60946,-0.72592,468.17,0.94554,0.1511,0.28832,169.73,#34,0.69755,0.64344,0.3153,140.89,0.39327,-0.71162,0.58218,427.76,0.59897,-0.2821,-0.74944,155.33,#35,-0.91742,-0.29924,0.26229,139.33,-0.38078,0.46883,-0.797,467.28,0.11553,-0.83105,-0.54406,168.73
    17385 
    17386 > ui mousemode right "rotate selected models"
    17387 
    17388 > view matrix models
    17389 > #25,0.26233,-0.79368,-0.54886,286.65,0.69342,-0.24051,0.67921,315.3,-0.67108,-0.55877,0.48726,286.2,#24,-0.7935,0.20487,-0.57305,406.91,-0.5957,-0.45407,0.66254,508.47,-0.12447,0.86709,0.48235,-68.073,#26,-0.5393,-0.48607,-0.68767,191.25,-0.69411,-0.20579,0.68982,459.24,-0.47682,0.84934,-0.2264,239.24,#27,0.57131,0.73284,-0.36952,177.07,-0.61684,0.086413,-0.78233,469.55,-0.54139,0.67489,0.50142,202.88,#28,-0.67241,0.23445,-0.70206,245.18,0.68803,-0.15172,-0.70964,460.14,-0.2729,-0.96021,-0.059292,176.13,#29,0.43264,0.89827,0.076956,127.77,0.88138,-0.40346,-0.24573,420.91,-0.18968,0.17414,-0.96628,177.95,#30,0.69183,-0.087156,0.71678,156.94,-0.55023,0.57918,0.60149,473.7,-0.46757,-0.81052,0.35274,177.36,#31,-0.59939,-0.51786,-0.61037,231.49,0.52239,-0.83083,0.19191,828.91,-0.60649,-0.20382,0.76852,262.95,#32,0.11293,0.73365,0.67008,139.07,-0.98968,0.023201,0.1414,418.59,0.08819,-0.67913,0.7287,273.68,#33,-0.73065,0.63867,0.24135,148.41,0.6778,0.63601,0.36888,406.12,0.082094,0.43311,-0.8976,217.86,#34,-0.83583,0.52363,-0.16491,187.87,0.11651,-0.12434,-0.98537,411.39,-0.53648,-0.84282,0.042921,201.82,#35,0.51648,0.1515,0.84279,149.8,0.5486,-0.81425,-0.18982,405.81,0.65749,0.56039,-0.50366,218.03
    17390 
    17391 > view matrix models
    17392 > #25,0.3957,-0.80395,-0.44394,263.29,0.5777,-0.15788,0.80083,305.14,-0.71392,-0.57335,0.40197,301.17,#24,-0.87698,0.098142,-0.47039,425.47,-0.46748,-0.40077,0.78794,443.21,-0.11119,0.91091,0.39735,-62.027,#26,-0.63131,-0.54097,-0.55569,194.72,-0.6375,-0.046039,0.76907,457.82,-0.44163,0.83978,-0.3158,237.83,#27,0.47821,0.71459,-0.51057,183.64,-0.74812,0.026924,-0.66302,466.95,-0.46004,0.69903,0.54747,200.1,#28,-0.53944,0.23719,-0.80793,250.08,0.76061,-0.27434,-0.58839,444.2,-0.36121,-0.93192,-0.032417,177.48,#29,0.57907,0.81255,0.06654,127.79,0.77836,-0.52673,-0.34164,424.93,-0.24255,0.24963,-0.93747,177.05,#30,0.60564,0.03682,0.79488,165.33,-0.69558,0.50967,0.50637,471.99,-0.38649,-0.85958,0.33429,173.4,#31,-0.48412,-0.64181,-0.59474,295.04,0.55572,-0.75054,0.35759,816.63,-0.67587,-0.15739,0.72001,232.22,#32,-0.056066,0.74907,0.66011,135.41,-0.98273,-0.15819,0.09604,429.49,0.17636,-0.64333,0.745,273.06,#33,-0.61012,0.72102,0.32847,144.37,0.79225,0.56028,0.24171,410.65,-0.0097597,0.4077,-0.91307,218.99,#34,-0.78688,0.52291,-0.3277,184.66,0.20177,-0.28384,-0.9374,407.96,-0.58319,-0.80374,0.11784,204.44,#35,0.57874,-0.0043097,0.8155,145.68,0.51464,-0.77379,-0.36931,410.14,0.63262,0.63342,-0.4456,219.25
    17393 
    17394 > ui mousemode right "translate selected models"
    17395 
    17396 > view matrix models
    17397 > #25,0.3957,-0.80395,-0.44394,286.28,0.5777,-0.15788,0.80083,303.44,-0.71392,-0.57335,0.40197,352.12,#24,-0.87698,0.098142,-0.47039,448.47,-0.46748,-0.40077,0.78794,441.5,-0.11119,0.91091,0.39735,-11.079,#26,-0.63131,-0.54097,-0.55569,217.71,-0.6375,-0.046039,0.76907,456.11,-0.44163,0.83978,-0.3158,288.78,#27,0.47821,0.71459,-0.51057,206.64,-0.74812,0.026924,-0.66302,465.25,-0.46004,0.69903,0.54747,251.05,#28,-0.53944,0.23719,-0.80793,273.08,0.76061,-0.27434,-0.58839,442.49,-0.36121,-0.93192,-0.032417,228.42,#29,0.57907,0.81255,0.06654,150.79,0.77836,-0.52673,-0.34164,423.22,-0.24255,0.24963,-0.93747,228,#30,0.60564,0.03682,0.79488,188.33,-0.69558,0.50967,0.50637,470.28,-0.38649,-0.85958,0.33429,224.35,#31,-0.48412,-0.64181,-0.59474,318.04,0.55572,-0.75054,0.35759,814.92,-0.67587,-0.15739,0.72001,283.17,#32,-0.056066,0.74907,0.66011,158.41,-0.98273,-0.15819,0.09604,427.79,0.17636,-0.64333,0.745,324.01,#33,-0.61012,0.72102,0.32847,167.37,0.79225,0.56028,0.24171,408.95,-0.0097597,0.4077,-0.91307,269.94,#34,-0.78688,0.52291,-0.3277,207.65,0.20177,-0.28384,-0.9374,406.25,-0.58319,-0.80374,0.11784,255.39,#35,0.57874,-0.0043097,0.8155,168.67,0.51464,-0.77379,-0.36931,408.43,0.63262,0.63342,-0.4456,270.2
    17398 
    17399 > ui mousemode right "rotate selected models"
    17400 
    17401 > view matrix models
    17402 > #25,0.41605,-0.76911,-0.48516,280.37,0.77906,0.026297,0.6264,273.77,-0.46901,-0.63858,0.61012,309.75,#24,-0.85734,0.062168,-0.51098,457.14,-0.41537,-0.66987,0.61542,522.1,-0.30403,0.73987,0.60013,19.292,#26,-0.59065,-0.58174,-0.5592,211.06,-0.46868,-0.31679,0.82461,438.06,-0.65686,0.74915,-0.085536,294.54,#27,0.52092,0.67697,-0.51995,201.69,-0.5576,-0.19134,-0.80776,458.67,-0.64632,0.7107,0.2778,261.11,#28,-0.54043,0.29173,-0.78919,269.78,0.83124,0.039904,-0.55448,444.93,-0.13027,-0.95567,-0.26407,236.24,#29,0.56968,0.81254,0.12345,148.23,0.82026,-0.5715,-0.023628,425.7,0.051355,0.11472,-0.99207,222.74,#30,0.64298,0.067035,0.76294,184.64,-0.53015,0.75788,0.3802,471.8,-0.55273,-0.64894,0.52284,236.41,#31,-0.46365,-0.61263,-0.64009,301.91,0.73812,-0.6667,0.10344,780.75,-0.49011,-0.4245,0.76131,409.21,#32,-0.038698,0.78492,0.61839,150.81,-0.98804,0.062399,-0.14103,399.43,-0.14929,-0.61645,0.77311,315.48,#33,-0.62979,0.68401,0.36809,163.02,0.7483,0.40717,0.52369,398.93,0.20833,0.60526,-0.76828,258.82,#34,-0.76118,0.57068,-0.3081,204.06,0.37038,-0.0074568,-0.92885,401.39,-0.53238,-0.82114,-0.20569,246.49,#35,0.53169,-0.015962,0.84679,164.33,0.29078,-0.93561,-0.20021,398.37,0.79546,0.35268,-0.49282,258.98
    17403 
    17404 > view matrix models
    17405 > #25,0.33522,-0.78133,-0.52645,295.01,0.83537,-0.01188,0.54955,280.01,-0.43564,-0.624,0.64872,300.35,#24,-0.82295,0.13682,-0.55139,442.94,-0.47554,-0.69694,0.53679,557.16,-0.31084,0.70396,0.63861,20.016,#26,-0.55987,-0.53567,-0.63214,211.04,-0.48729,-0.40418,0.77408,437.94,-0.67015,0.74141,-0.034739,294.58,#27,0.55519,0.70578,-0.44005,199.18,-0.47612,-0.16413,-0.86393,459.23,-0.68197,0.68916,0.24491,262.39,#28,-0.61496,0.26733,-0.74186,267.7,0.78456,0.11273,-0.60973,452.92,-0.079373,-0.95699,-0.27906,235.77,#29,0.49521,0.86244,0.10468,148.1,0.86474,-0.50092,0.036151,423.5,0.083613,0.072616,-0.99385,223.26,#30,0.67621,-0.014144,0.73658,180.52,-0.4424,0.79168,0.42134,471.97,-0.58909,-0.61078,0.52908,238.66,#31,-0.53758,-0.55933,-0.631,273.3,0.71644,-0.6976,0.0079897,781.39,-0.44465,-0.44778,0.77574,424.96,#32,0.046498,0.76341,0.64424,154.92,-0.97901,0.16293,-0.12241,393.06,-0.19842,-0.62503,0.75496,314.5,#33,-0.6896,0.65726,0.30408,165.96,0.67744,0.43703,0.59168,396.43,0.25599,0.61402,-0.74663,257.7,#34,-0.80194,0.5521,-0.22821,206.35,0.32591,0.08416,-0.94165,403.18,-0.50068,-0.82952,-0.24743,244.86,#35,0.51986,0.074768,0.85097,167.31,0.29822,-0.94937,-0.098774,395.99,0.8005,0.30513,-0.51584,257.81
    17406 
    17407 > ui mousemode right "translate selected models"
    17408 
    17409 > view matrix models
    17410 > #25,0.33522,-0.78133,-0.52645,292.05,0.83537,-0.01188,0.54955,264.57,-0.43564,-0.624,0.64872,325.87,#24,-0.82295,0.13682,-0.55139,439.98,-0.47554,-0.69694,0.53679,541.72,-0.31084,0.70396,0.63861,45.537,#26,-0.55987,-0.53567,-0.63214,208.08,-0.48729,-0.40418,0.77408,422.49,-0.67015,0.74141,-0.034739,320.1,#27,0.55519,0.70578,-0.44005,196.22,-0.47612,-0.16413,-0.86393,443.78,-0.68197,0.68916,0.24491,287.91,#28,-0.61496,0.26733,-0.74186,264.74,0.78456,0.11273,-0.60973,437.47,-0.079373,-0.95699,-0.27906,261.29,#29,0.49521,0.86244,0.10468,145.14,0.86474,-0.50092,0.036151,408.06,0.083613,0.072616,-0.99385,248.78,#30,0.67621,-0.014144,0.73658,177.56,-0.4424,0.79168,0.42134,456.52,-0.58909,-0.61078,0.52908,264.18,#31,-0.53758,-0.55933,-0.631,270.34,0.71644,-0.6976,0.0079897,765.95,-0.44465,-0.44778,0.77574,450.48,#32,0.046498,0.76341,0.64424,151.95,-0.97901,0.16293,-0.12241,377.61,-0.19842,-0.62503,0.75496,340.02,#33,-0.6896,0.65726,0.30408,162.99,0.67744,0.43703,0.59168,380.99,0.25599,0.61402,-0.74663,283.22,#34,-0.80194,0.5521,-0.22821,203.38,0.32591,0.08416,-0.94165,387.74,-0.50068,-0.82952,-0.24743,270.38,#35,0.51986,0.074768,0.85097,164.35,0.29822,-0.94937,-0.098774,380.54,0.8005,0.30513,-0.51584,283.33
    17411 
    17412 > view matrix models
    17413 > #25,0.33522,-0.78133,-0.52645,279.89,0.83537,-0.01188,0.54955,287.42,-0.43564,-0.624,0.64872,316.99,#24,-0.82295,0.13682,-0.55139,427.82,-0.47554,-0.69694,0.53679,564.57,-0.31084,0.70396,0.63861,36.66,#26,-0.55987,-0.53567,-0.63214,195.91,-0.48729,-0.40418,0.77408,445.34,-0.67015,0.74141,-0.034739,311.22,#27,0.55519,0.70578,-0.44005,184.06,-0.47612,-0.16413,-0.86393,466.63,-0.68197,0.68916,0.24491,279.03,#28,-0.61496,0.26733,-0.74186,252.58,0.78456,0.11273,-0.60973,460.32,-0.079373,-0.95699,-0.27906,252.41,#29,0.49521,0.86244,0.10468,132.98,0.86474,-0.50092,0.036151,430.9,0.083613,0.072616,-0.99385,239.9,#30,0.67621,-0.014144,0.73658,165.4,-0.4424,0.79168,0.42134,479.37,-0.58909,-0.61078,0.52908,255.3,#31,-0.53758,-0.55933,-0.631,258.18,0.71644,-0.6976,0.0079897,788.79,-0.44465,-0.44778,0.77574,441.6,#32,0.046498,0.76341,0.64424,139.79,-0.97901,0.16293,-0.12241,400.46,-0.19842,-0.62503,0.75496,331.14,#33,-0.6896,0.65726,0.30408,150.83,0.67744,0.43703,0.59168,403.84,0.25599,0.61402,-0.74663,274.35,#34,-0.80194,0.5521,-0.22821,191.22,0.32591,0.08416,-0.94165,410.58,-0.50068,-0.82952,-0.24743,261.5,#35,0.51986,0.074768,0.85097,152.19,0.29822,-0.94937,-0.098774,403.39,0.8005,0.30513,-0.51584,274.46
    17414 
    17415 > ui mousemode right zoom
    17416 
    17417 > ui mousemode right "rotate selected models"
    17418 
    17419 > view matrix models
    17420 > #25,-0.29841,-0.56669,-0.768,344.37,0.32437,-0.81698,0.47679,454.9,-0.89763,-0.10684,0.42761,313.67,#24,-0.2942,0.55512,-0.778,274.77,-0.87699,0.16678,0.45063,488.68,0.37992,0.81488,0.43777,-100.21,#26,-0.08461,-0.14238,-0.98619,176.76,-0.9964,0.01745,0.082966,495.03,0.0053963,0.98966,-0.14335,265.48,#27,0.74114,0.62627,0.24186,154.22,-0.44522,0.72814,-0.52114,478.89,-0.50249,0.27856,0.81848,236.14,#28,-0.97967,0.13877,-0.1449,209.99,0.066924,-0.45485,-0.88805,491.41,-0.18914,-0.87969,0.43631,189.49,#29,-0.20599,0.97614,0.068686,140.38,0.77162,0.2052,-0.60208,407.64,-0.60181,-0.071022,-0.79548,248.33,#30,0.80779,-0.5278,0.2625,132.16,-0.30393,0.0086464,0.95266,460.46,-0.50508,-0.84932,-0.15343,220.41,#31,-0.87126,0.052324,-0.48803,-6.8934,-0.17924,-0.95955,0.21711,800.69,-0.45692,0.27664,0.84539,157.38,#32,0.6883,0.47114,0.55161,164.37,-0.64273,0.04348,0.76486,456.34,0.33637,-0.88098,0.33275,328.02,#33,-0.96913,0.19158,-0.15516,171.2,0.19907,0.97939,-0.034109,425.15,0.14543,-0.063945,-0.9873,279.65,#34,-0.80838,0.36862,0.45896,197.08,-0.56029,-0.24269,-0.79194,440.14,-0.18054,-0.89734,0.40273,248.86,#35,0.17847,0.68236,0.7089,172.51,0.9623,-0.27132,0.018895,425.66,0.20523,0.6788,-0.70506,279.36
    17421 
    17422 > ui mousemode right "translate selected models"
    17423 
    17424 > view matrix models
    17425 > #25,-0.29841,-0.56669,-0.768,369.85,0.32437,-0.81698,0.47679,421.84,-0.89763,-0.10684,0.42761,322.69,#24,-0.2942,0.55512,-0.778,300.25,-0.87699,0.16678,0.45063,455.62,0.37992,0.81488,0.43777,-91.192,#26,-0.08461,-0.14238,-0.98619,202.24,-0.9964,0.01745,0.082966,461.97,0.0053963,0.98966,-0.14335,274.5,#27,0.74114,0.62627,0.24186,179.7,-0.44522,0.72814,-0.52114,445.83,-0.50249,0.27856,0.81848,245.15,#28,-0.97967,0.13877,-0.1449,235.47,0.066924,-0.45485,-0.88805,458.35,-0.18914,-0.87969,0.43631,198.5,#29,-0.20599,0.97614,0.068686,165.86,0.77162,0.2052,-0.60208,374.58,-0.60181,-0.071022,-0.79548,257.34,#30,0.80779,-0.5278,0.2625,157.64,-0.30393,0.0086464,0.95266,427.4,-0.50508,-0.84932,-0.15343,229.42,#31,-0.87126,0.052324,-0.48803,18.586,-0.17924,-0.95955,0.21711,767.63,-0.45692,0.27664,0.84539,166.4,#32,0.6883,0.47114,0.55161,189.85,-0.64273,0.04348,0.76486,423.28,0.33637,-0.88098,0.33275,337.03,#33,-0.96913,0.19158,-0.15516,196.68,0.19907,0.97939,-0.034109,392.09,0.14543,-0.063945,-0.9873,288.66,#34,-0.80838,0.36862,0.45896,222.56,-0.56029,-0.24269,-0.79194,407.08,-0.18054,-0.89734,0.40273,257.88,#35,0.17847,0.68236,0.7089,197.99,0.9623,-0.27132,0.018895,392.6,0.20523,0.6788,-0.70506,288.37
    17426 
    17427 > ui mousemode right "rotate selected models"
    17428 
    17429 > view matrix models
    17430 > #25,-0.070975,-0.78164,-0.61967,357.22,0.61024,-0.52544,0.59289,341.22,-0.78903,-0.33607,0.51428,332.66,#24,-0.60203,0.47926,-0.63865,351.35,-0.7885,-0.23083,0.57007,494.14,0.1258,0.84678,0.51686,-59.594,#26,-0.39913,-0.2448,-0.88361,218.18,-0.87917,-0.17139,0.44461,446.14,-0.26029,0.9543,-0.14682,291.6,#27,0.61335,0.78899,-0.035851,195.29,-0.53721,0.38349,-0.75123,446.1,-0.57896,0.48003,0.65907,258.35,#28,-0.87722,0.088441,-0.47187,257.22,0.4387,-0.25155,-0.86271,449.65,-0.195,-0.96379,0.18187,218.41,#29,0.12424,0.99165,-0.034486,158.03,0.91536,-0.12795,-0.38176,383.07,-0.38299,0.015862,-0.92362,250.88,#30,0.72153,-0.39336,0.56978,170.5,-0.43068,0.38937,0.81419,440.57,-0.54213,-0.83286,0.11153,237.64,#31,-0.82258,-0.29055,-0.48882,156.12,0.24165,-0.95674,0.16204,812.38,-0.51475,0.015167,0.85721,262.34,#32,0.40166,0.56056,0.72418,186.79,-0.89871,0.089286,0.42935,400.26,0.17602,-0.82329,0.53964,341.3,#33,-0.86442,0.50114,-0.040511,188.93,0.4757,0.8413,0.25674,381.07,0.16275,0.20266,-0.96563,286.65,#34,-0.918,0.3745,0.1305,221.67,-0.19224,-0.13239,-0.97238,393.25,-0.34688,-0.91773,0.19353,261.72,#35,0.45164,0.47465,0.75546,190.35,0.76612,-0.64028,-0.055731,381.16,0.45726,0.60394,-0.65282,286.54
    17431 
    17432 > ui mousemode right "translate selected models"
    17433 
    17434 > view matrix models
    17435 > #25,-0.070975,-0.78164,-0.61967,353.15,0.61024,-0.52544,0.59289,343.18,-0.78903,-0.33607,0.51428,329.12,#24,-0.60203,0.47926,-0.63865,347.28,-0.7885,-0.23083,0.57007,496.1,0.1258,0.84678,0.51686,-63.13,#26,-0.39913,-0.2448,-0.88361,214.11,-0.87917,-0.17139,0.44461,448.1,-0.26029,0.9543,-0.14682,288.07,#27,0.61335,0.78899,-0.035851,191.22,-0.53721,0.38349,-0.75123,448.06,-0.57896,0.48003,0.65907,254.82,#28,-0.87722,0.088441,-0.47187,253.14,0.4387,-0.25155,-0.86271,451.61,-0.195,-0.96379,0.18187,214.87,#29,0.12424,0.99165,-0.034486,153.96,0.91536,-0.12795,-0.38176,385.03,-0.38299,0.015862,-0.92362,247.35,#30,0.72153,-0.39336,0.56978,166.43,-0.43068,0.38937,0.81419,442.53,-0.54213,-0.83286,0.11153,234.11,#31,-0.82258,-0.29055,-0.48882,152.05,0.24165,-0.95674,0.16204,814.34,-0.51475,0.015167,0.85721,258.81,#32,0.40166,0.56056,0.72418,182.72,-0.89871,0.089286,0.42935,402.22,0.17602,-0.82329,0.53964,337.76,#33,-0.86442,0.50114,-0.040511,184.85,0.4757,0.8413,0.25674,383.04,0.16275,0.20266,-0.96563,283.11,#34,-0.918,0.3745,0.1305,217.6,-0.19224,-0.13239,-0.97238,395.21,-0.34688,-0.91773,0.19353,258.19,#35,0.45164,0.47465,0.75546,186.28,0.76612,-0.64028,-0.055731,383.12,0.45726,0.60394,-0.65282,283.01
    17436 
    17437 > view matrix models
    17438 > #25,-0.070975,-0.78164,-0.61967,355.44,0.61024,-0.52544,0.59289,347.36,-0.78903,-0.33607,0.51428,332.38,#24,-0.60203,0.47926,-0.63865,349.57,-0.7885,-0.23083,0.57007,500.28,0.1258,0.84678,0.51686,-59.87,#26,-0.39913,-0.2448,-0.88361,216.4,-0.87917,-0.17139,0.44461,452.28,-0.26029,0.9543,-0.14682,291.33,#27,0.61335,0.78899,-0.035851,193.51,-0.53721,0.38349,-0.75123,452.24,-0.57896,0.48003,0.65907,258.08,#28,-0.87722,0.088441,-0.47187,255.43,0.4387,-0.25155,-0.86271,455.79,-0.195,-0.96379,0.18187,218.13,#29,0.12424,0.99165,-0.034486,156.25,0.91536,-0.12795,-0.38176,389.21,-0.38299,0.015862,-0.92362,250.6,#30,0.72153,-0.39336,0.56978,168.72,-0.43068,0.38937,0.81419,446.71,-0.54213,-0.83286,0.11153,237.37,#31,-0.82258,-0.29055,-0.48882,154.34,0.24165,-0.95674,0.16204,818.52,-0.51475,0.015167,0.85721,262.07,#32,0.40166,0.56056,0.72418,185.01,-0.89871,0.089286,0.42935,406.4,0.17602,-0.82329,0.53964,341.02,#33,-0.86442,0.50114,-0.040511,187.14,0.4757,0.8413,0.25674,387.21,0.16275,0.20266,-0.96563,286.37,#34,-0.918,0.3745,0.1305,219.89,-0.19224,-0.13239,-0.97238,399.39,-0.34688,-0.91773,0.19353,261.45,#35,0.45164,0.47465,0.75546,188.57,0.76612,-0.64028,-0.055731,387.3,0.45726,0.60394,-0.65282,286.27
    17439 
    17440 > ui mousemode right zoom
    17441 
    17442 > ui mousemode right "move picked models"
    17443 
    17444 > ui mousemode right "rotate selected models"
    17445 
    17446 > view matrix models
    17447 > #25,-0.054026,-0.7666,-0.63985,355.06,0.80471,-0.41281,0.42665,324.31,-0.59121,-0.49184,0.63919,319.25,#24,-0.59787,0.45685,-0.65867,359.04,-0.79322,-0.45562,0.40399,579.82,-0.11554,0.764,0.63479,-15.379,#26,-0.38308,-0.27054,-0.88321,216.28,-0.77325,-0.42913,0.46683,436.34,-0.50531,0.86177,-0.044808,304.63,#27,0.63486,0.77115,-0.047665,194.35,-0.35525,0.23657,-0.90434,445.47,-0.68611,0.59106,0.42414,271.99,#28,-0.87538,0.11855,-0.46868,257.36,0.4745,0.025151,-0.8799,460.02,-0.092528,-0.99263,-0.078271,236.48,#29,0.1265,0.99196,-0.0042326,157.92,0.98575,-0.12618,-0.11124,386.93,-0.11088,0.0098987,-0.99378,246.25,#30,0.74092,-0.3729,0.55856,170.22,-0.26294,0.60422,0.75218,445.86,-0.61798,-0.70417,0.34963,249.82,#31,-0.80968,-0.28175,-0.51482,151.59,0.37372,-0.9239,-0.082136,796.29,-0.4525,-0.2589,0.85335,375.96,#32,0.40497,0.58316,0.70422,183.9,-0.91185,0.31434,0.26406,378.45,-0.067371,-0.74908,0.65905,338.72,#33,-0.87324,0.48706,-0.015124,187.79,0.41105,0.75293,0.51394,375.15,0.26171,0.44258,-0.85769,280.99,#34,-0.90575,0.40202,0.13412,221.13,-0.089794,0.12724,-0.9878,393.79,-0.41419,-0.90674,-0.079152,261.41,#35,0.43097,0.46313,0.77445,189.22,0.61015,-0.78187,0.12803,375.26,0.66481,0.41735,-0.61955,280.95
    17448 
    17449 > view matrix models
    17450 > #25,0.35959,-0.72077,-0.59262,297.91,0.76862,-0.13131,0.62608,270.65,-0.52907,-0.68063,0.50678,350.13,#24,-0.78305,0.083593,-0.61632,466.17,-0.54255,-0.5763,0.61116,505.97,-0.30409,0.81295,0.49662,44.2,#26,-0.48809,-0.59432,-0.63918,212.19,-0.60115,-0.30201,0.73987,423.18,-0.63275,0.74537,-0.20987,312.55,#27,0.62304,0.64253,-0.44607,202.97,-0.55776,-0.034868,-0.82927,438.91,-0.54839,0.76546,0.33666,276.54,#28,-0.61817,0.3517,-0.70297,273.73,0.7439,-0.027118,-0.66774,430.7,-0.25391,-0.93572,-0.24487,257.33,#29,0.47097,0.86046,0.19439,156.28,0.88211,-0.4572,-0.11339,396.06,-0.0086885,0.22488,-0.97435,239.11,#30,0.73449,0.028462,0.67802,186.34,-0.50652,0.68792,0.51982,447.29,-0.45163,-0.72523,0.51968,249.57,#31,-0.50663,-0.50435,-0.69926,256.53,0.62302,-0.77479,0.10743,784.3,-0.59596,-0.38123,0.70675,392.94,#32,0.080793,0.81447,0.57455,155.24,-0.99597,0.088545,0.014534,380.18,-0.039036,-0.57341,0.81834,334.21,#33,-0.72133,0.59103,0.36107,171.36,0.68721,0.5459,0.47931,375.15,0.086178,0.59387,-0.79993,278.77,#34,-0.7582,0.62407,-0.18888,212.64,0.2206,-0.027073,-0.97499,381.09,-0.61357,-0.7809,-0.11714,268.62,#35,0.43952,0.062454,0.89606,172.71,0.43316,-0.88866,-0.15053,374.77,0.78689,0.4543,-0.41763,279.07
    17451 
    17452 > ui mousemode right "translate selected models"
    17453 
    17454 > view matrix models
    17455 > #25,0.35959,-0.72077,-0.59262,302,0.76862,-0.13131,0.62608,277.81,-0.52907,-0.68063,0.50678,338.55,#24,-0.78305,0.083593,-0.61632,470.26,-0.54255,-0.5763,0.61116,513.13,-0.30409,0.81295,0.49662,32.611,#26,-0.48809,-0.59432,-0.63918,216.27,-0.60115,-0.30201,0.73987,430.34,-0.63275,0.74537,-0.20987,300.96,#27,0.62304,0.64253,-0.44607,207.05,-0.55776,-0.034868,-0.82927,446.07,-0.54839,0.76546,0.33666,264.95,#28,-0.61817,0.3517,-0.70297,277.81,0.7439,-0.027118,-0.66774,437.86,-0.25391,-0.93572,-0.24487,245.74,#29,0.47097,0.86046,0.19439,160.36,0.88211,-0.4572,-0.11339,403.22,-0.0086885,0.22488,-0.97435,227.52,#30,0.73449,0.028462,0.67802,190.43,-0.50652,0.68792,0.51982,454.44,-0.45163,-0.72523,0.51968,237.98,#31,-0.50663,-0.50435,-0.69926,260.62,0.62302,-0.77479,0.10743,791.46,-0.59596,-0.38123,0.70675,381.35,#32,0.080793,0.81447,0.57455,159.32,-0.99597,0.088545,0.014534,387.34,-0.039036,-0.57341,0.81834,322.62,#33,-0.72133,0.59103,0.36107,175.45,0.68721,0.5459,0.47931,382.31,0.086178,0.59387,-0.79993,267.18,#34,-0.7582,0.62407,-0.18888,216.72,0.2206,-0.027073,-0.97499,388.24,-0.61357,-0.7809,-0.11714,257.03,#35,0.43952,0.062454,0.89606,176.79,0.43316,-0.88866,-0.15053,381.93,0.78689,0.4543,-0.41763,267.48
    17456 
    17457 > view matrix models
    17458 > #25,0.35959,-0.72077,-0.59262,302.23,0.76862,-0.13131,0.62608,281.18,-0.52907,-0.68063,0.50678,338.86,#24,-0.78305,0.083593,-0.61632,470.48,-0.54255,-0.5763,0.61116,516.49,-0.30409,0.81295,0.49662,32.928,#26,-0.48809,-0.59432,-0.63918,216.5,-0.60115,-0.30201,0.73987,433.7,-0.63275,0.74537,-0.20987,301.28,#27,0.62304,0.64253,-0.44607,207.28,-0.55776,-0.034868,-0.82927,449.43,-0.54839,0.76546,0.33666,265.27,#28,-0.61817,0.3517,-0.70297,278.04,0.7439,-0.027118,-0.66774,441.22,-0.25391,-0.93572,-0.24487,246.06,#29,0.47097,0.86046,0.19439,160.59,0.88211,-0.4572,-0.11339,406.58,-0.0086885,0.22488,-0.97435,227.84,#30,0.73449,0.028462,0.67802,190.65,-0.50652,0.68792,0.51982,457.81,-0.45163,-0.72523,0.51968,238.3,#31,-0.50663,-0.50435,-0.69926,260.84,0.62302,-0.77479,0.10743,794.82,-0.59596,-0.38123,0.70675,381.67,#32,0.080793,0.81447,0.57455,159.55,-0.99597,0.088545,0.014534,390.71,-0.039036,-0.57341,0.81834,322.94,#33,-0.72133,0.59103,0.36107,175.67,0.68721,0.5459,0.47931,385.67,0.086178,0.59387,-0.79993,267.5,#34,-0.7582,0.62407,-0.18888,216.95,0.2206,-0.027073,-0.97499,391.61,-0.61357,-0.7809,-0.11714,257.35,#35,0.43952,0.062454,0.89606,177.02,0.43316,-0.88866,-0.15053,385.29,0.78689,0.4543,-0.41763,267.8
    17459 
    17460 > color #24 #bec8cfff models
    17461 
    17462 > view matrix models
    17463 > #25,0.35959,-0.72077,-0.59262,296.57,0.76862,-0.13131,0.62608,277.75,-0.52907,-0.68063,0.50678,339.64,#24,-0.78305,0.083593,-0.61632,464.83,-0.54255,-0.5763,0.61116,513.07,-0.30409,0.81295,0.49662,33.709,#26,-0.48809,-0.59432,-0.63918,210.85,-0.60115,-0.30201,0.73987,430.27,-0.63275,0.74537,-0.20987,302.06,#27,0.62304,0.64253,-0.44607,201.63,-0.55776,-0.034868,-0.82927,446,-0.54839,0.76546,0.33666,266.05,#28,-0.61817,0.3517,-0.70297,272.39,0.7439,-0.027118,-0.66774,437.79,-0.25391,-0.93572,-0.24487,246.84,#29,0.47097,0.86046,0.19439,154.94,0.88211,-0.4572,-0.11339,403.16,-0.0086885,0.22488,-0.97435,228.62,#30,0.73449,0.028462,0.67802,185,-0.50652,0.68792,0.51982,454.38,-0.45163,-0.72523,0.51968,239.08,#31,-0.50663,-0.50435,-0.69926,255.19,0.62302,-0.77479,0.10743,791.4,-0.59596,-0.38123,0.70675,382.45,#32,0.080793,0.81447,0.57455,153.9,-0.99597,0.088545,0.014534,387.28,-0.039036,-0.57341,0.81834,323.72,#33,-0.72133,0.59103,0.36107,170.02,0.68721,0.5459,0.47931,382.25,0.086178,0.59387,-0.79993,268.28,#34,-0.7582,0.62407,-0.18888,211.3,0.2206,-0.027073,-0.97499,388.18,-0.61357,-0.7809,-0.11714,258.13,#35,0.43952,0.062454,0.89606,171.37,0.43316,-0.88866,-0.15053,381.87,0.78689,0.4543,-0.41763,268.58
    17464 
    17465 > ui mousemode right "rotate selected models"
    17466 
    17467 > view matrix models
    17468 > #25,0.27308,-0.7906,-0.54808,308.72,0.95664,0.16317,0.24127,253.82,-0.10132,-0.5902,0.80087,252.62,#24,-0.7967,0.19415,-0.57234,433.39,-0.38408,-0.89383,0.23142,622.8,-0.46664,0.4042,0.78668,92.642,#26,-0.54022,-0.4948,-0.68069,214.76,-0.24751,-0.67968,0.69049,397.2,-0.80431,0.54149,0.24471,304.02,#27,0.57144,0.72765,-0.37945,200.97,-0.15905,-0.35541,-0.92108,427.86,-0.80508,0.5867,-0.08736,281.67,#28,-0.66506,0.24155,-0.70665,269.24,0.71753,0.46898,-0.51499,436.17,0.20701,-0.84954,-0.48522,254.95,#29,0.44062,0.89381,0.083438,151.54,0.80654,-0.43497,0.40036,405.43,0.39414,-0.10911,-0.91255,231.97,#30,0.6918,-0.076025,0.71808,181.09,-0.15332,0.9563,0.24896,447.06,-0.70562,-0.28233,0.64991,264.07,#31,-0.59039,-0.5221,-0.61551,257.47,0.79157,-0.52353,-0.31518,673.46,-0.15768,-0.6733,0.72236,550.38,#32,0.10501,0.73958,0.66482,162,-0.83538,0.4283,-0.34452,344.54,-0.53955,-0.51921,0.66281,306,#33,-0.7264,0.63953,0.25168,171.73,0.49157,0.22754,0.84058,368.97,0.48031,0.73432,-0.47967,254.36,#34,-0.83035,0.52991,-0.1724,211.36,0.43123,0.41511,-0.80107,382.57,-0.35293,-0.73951,-0.5732,245.05,#35,0.51479,0.1408,0.84567,173.11,0.021873,-0.98826,0.15123,368.61,0.85704,-0.059354,-0.51183,254.31
    17469 
    17470 > show #!25 models
    17471 
    17472 > hide #!24 models
    17473 
    17474 > select subtract #24
    17475 
    17476 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 13 models selected 
    17477 
    17478 > hide #26 models
    17479 
    17480 > select subtract #26
    17481 
    17482 31014 atoms, 31550 bonds, 1 pseudobond, 3912 residues, 12 models selected 
    17483 
    17484 > select subtract #27
    17485 
    17486 23513 atoms, 23931 bonds, 1 pseudobond, 2959 residues, 11 models selected 
    17487 
    17488 > select subtract #28
    17489 
    17490 22056 atoms, 22448 bonds, 1 pseudobond, 2778 residues, 10 models selected 
    17491 
    17492 > select subtract #29
    17493 
    17494 20599 atoms, 20965 bonds, 1 pseudobond, 2597 residues, 9 models selected 
    17495 
    17496 > select subtract #30
    17497 
    17498 13385 atoms, 13592 bonds, 1 pseudobond, 1692 residues, 8 models selected 
    17499 
    17500 > select subtract #31
    17501 
    17502 11923 atoms, 12111 bonds, 1 pseudobond, 1513 residues, 7 models selected 
    17503 
    17504 > select subtract #32
    17505 
    17506 5250 atoms, 5325 bonds, 660 residues, 5 models selected 
    17507 
    17508 > select subtract #33
    17509 
    17510 3830 atoms, 3884 bonds, 483 residues, 4 models selected 
    17511 
    17512 > select subtract #34
    17513 
    17514 1463 atoms, 1486 bonds, 185 residues, 3 models selected 
    17515 
    17516 > select subtract #35
    17517 
    17518 2 models selected 
    17519 
    17520 > view matrix models
    17521 > #25,0.065191,-0.73992,-0.66953,341.05,0.99118,-0.029589,0.12921,286.68,-0.11541,-0.67204,0.73146,272.49
    17522 
    17523 > view matrix models
    17524 > #25,0.0066436,-0.72635,-0.68729,348.23,0.9992,-0.022225,0.033147,296.69,-0.039352,-0.68696,0.72563,266.4
    17525 
    17526 > hide #!13 models
    17527 
    17528 > view matrix models
    17529 > #25,0.054396,-0.76294,-0.64417,341.9,0.97012,0.19314,-0.14683,296.4,0.23644,-0.61694,0.75066,223.85
    17530 
    17531 > view matrix models
    17532 > #25,0.51727,-0.85449,-0.047762,227.32,0.74747,0.4239,0.51147,213.16,-0.41679,-0.30027,0.85798,246.64
    17533 
    17534 > ui mousemode right "translate selected models"
    17535 
    17536 > view matrix models
    17537 > #25,0.51727,-0.85449,-0.047762,195.48,0.74747,0.4239,0.51147,193.78,-0.41679,-0.30027,0.85798,230.65
    17538 
    17539 > show #!13 models
    17540 
    17541 > view matrix models
    17542 > #25,0.51727,-0.85449,-0.047762,157.88,0.74747,0.4239,0.51147,218.29,-0.41679,-0.30027,0.85798,195.99
    17543 
    17544 > view matrix models
    17545 > #25,0.51727,-0.85449,-0.047762,210.94,0.74747,0.4239,0.51147,229.99,-0.41679,-0.30027,0.85798,239.89
    17546 
    17547 > ui mousemode right "rotate selected models"
    17548 
    17549 > view matrix models
    17550 > #25,-0.70293,-0.50682,-0.49902,362.63,0.67229,-0.70249,-0.23353,464.3,-0.2322,-0.49964,0.83453,245.7
    17551 
    17552 > view matrix models
    17553 > #25,-0.75868,-0.53578,-0.3706,356.61,0.62434,-0.76043,-0.17875,469.89,-0.18604,-0.36699,0.91143,215.23
    17554 
    17555 > view matrix models
    17556 > #25,-0.93586,0.027592,-0.35128,307.05,-0.1268,-0.95652,0.26267,523.84,-0.32876,0.29036,0.89867,154.52
    17557 
    17558 > view matrix models
    17559 > #25,-0.87849,0.30691,-0.36616,269.1,-0.42252,-0.85681,0.29556,541.29,-0.22302,0.41435,0.88237,129.8
    17560 
    17561 > fitmap #25 inMap #13
    17562 
    17563 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage1_postprocess.mrc
    17564 using 65799 points 
    17565 correlation = 0.8386, correlation about mean = 0.1168, overlap = 4248 
    17566 steps = 172, shift = 87.8, angle = 36.5 degrees 
    17567  
    17568 Position of emd_3720_2017_leaf.map (#25) relative to
    17569 COPI_golph_linkage1_postprocess.mrc (#13) coordinates: 
    17570 Matrix rotation and translation 
    17571 -0.11325375 0.87368989 -0.47311689 161.39806956 
    17572 -0.91366114 -0.27867556 -0.29591094 320.66900746 
    17573 -0.39038051 0.39875549 0.82981754 144.68682489 
    17574 Axis 0.36192177 -0.04310572 -0.93121132 
    17575 Axis point 236.23873697 78.94197138 0.00000000 
    17576 Rotation angle (degrees) 106.32323310 
    17577 Shift along axis -90.14320499 
    17578  
    17579 
    17580 > view matrix models
    17581 > #25,-0.38909,-0.21141,-0.89661,405.72,-0.35776,-0.86223,0.35856,472.47,-0.84889,0.46029,0.25985,263.93
    17582 
    17583 > view matrix models
    17584 > #25,-0.32538,-0.59232,-0.73708,424.36,0.85669,-0.51462,0.035371,333.63,-0.40026,-0.61994,0.67488,291.14
    17585 
    17586 > ui mousemode right "translate selected models"
    17587 
    17588 > view matrix models
    17589 > #25,-0.32538,-0.59232,-0.73708,403.05,0.85669,-0.51462,0.035371,352.56,-0.40026,-0.61994,0.67488,325.57
    17590 
    17591 > view matrix models
    17592 > #25,-0.32538,-0.59232,-0.73708,381.37,0.85669,-0.51462,0.035371,349.34,-0.40026,-0.61994,0.67488,303.9
    17593 
    17594 > fitmap #25 inMap #13
    17595 
    17596 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage1_postprocess.mrc
    17597 using 65799 points 
    17598 correlation = 0.933, correlation about mean = 0.1196, overlap = 5896 
    17599 steps = 116, shift = 38.2, angle = 15 degrees 
    17600  
    17601 Position of emd_3720_2017_leaf.map (#25) relative to
    17602 COPI_golph_linkage1_postprocess.mrc (#13) coordinates: 
    17603 Matrix rotation and translation 
    17604 -0.94603206 -0.17522221 -0.27261797 295.24410684 
    17605 0.28403044 -0.85336477 -0.43714450 266.44938693 
    17606 -0.15604514 -0.49098451 0.85707885 249.15658630 
    17607 Axis -0.11290390 -0.24445626 0.96306482 
    17608 Axis point 143.32181669 184.39107524 0.00000000 
    17609 Rotation angle (degrees) 166.20593340 
    17610 Shift along axis 141.48451210 
    17611  
    17612 
    17613 > hide #!13 models
    17614 
    17615 > show #!24 models
    17616 
    17617 > select subtract #25
    17618 
    17619 Nothing selected 
    17620 
    17621 > select add #24
    17622 
    17623 2 models selected 
    17624 
    17625 > show #26 models
    17626 
    17627 > select add #26
    17628 
    17629 9810 atoms, 10032 bonds, 1233 residues, 3 models selected 
    17630 
    17631 > show #27 models
    17632 
    17633 > select add #27
    17634 
    17635 17311 atoms, 17651 bonds, 2186 residues, 4 models selected 
    17636 
    17637 > show #28 models
    17638 
    17639 > select add #28
    17640 
    17641 18768 atoms, 19134 bonds, 2367 residues, 5 models selected 
    17642 
    17643 > show #29 models
    17644 
    17645 > select add #29
    17646 
    17647 20225 atoms, 20617 bonds, 2548 residues, 6 models selected 
    17648 
    17649 > show #30 models
    17650 
    17651 > select add #30
    17652 
    17653 27439 atoms, 27990 bonds, 3453 residues, 7 models selected 
    17654 
    17655 > hide #26 models
    17656 
    17657 > hide #27 models
    17658 
    17659 > hide #28 models
    17660 
    17661 > hide #29 models
    17662 
    17663 > hide #30 models
    17664 
    17665 > select add #31
    17666 
    17667 28901 atoms, 29471 bonds, 3632 residues, 8 models selected 
    17668 
    17669 > select add #32
    17670 
    17671 35574 atoms, 36257 bonds, 1 pseudobond, 4485 residues, 10 models selected 
    17672 
    17673 > select add #33
    17674 
    17675 36994 atoms, 37698 bonds, 1 pseudobond, 4662 residues, 11 models selected 
    17676 
    17677 > select add #34
    17678 
    17679 39361 atoms, 40096 bonds, 1 pseudobond, 4960 residues, 12 models selected 
    17680 
    17681 > select add #35
    17682 
    17683 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 13 models selected 
    17684 
    17685 > view matrix models
    17686 > #24,-0.7967,0.19415,-0.57234,611.92,-0.38408,-0.89383,0.23142,805.74,-0.46664,0.4042,0.78668,83.809,#26,-0.54022,-0.4948,-0.68069,393.29,-0.24751,-0.67968,0.69049,580.14,-0.80431,0.54149,0.24471,295.18,#27,0.57144,0.72765,-0.37945,379.5,-0.15905,-0.35541,-0.92108,610.8,-0.80508,0.5867,-0.08736,272.84,#28,-0.66506,0.24155,-0.70665,447.77,0.71753,0.46898,-0.51499,619.1,0.20701,-0.84954,-0.48522,246.12,#29,0.44062,0.89381,0.083438,330.07,0.80654,-0.43497,0.40036,588.37,0.39414,-0.10911,-0.91255,223.14,#30,0.6918,-0.076025,0.71808,359.62,-0.15332,0.9563,0.24896,630,-0.70562,-0.28233,0.64991,255.24,#31,-0.59039,-0.5221,-0.61551,436,0.79157,-0.52353,-0.31518,856.4,-0.15768,-0.6733,0.72236,541.54,#32,0.10501,0.73958,0.66482,340.52,-0.83538,0.4283,-0.34452,527.48,-0.53955,-0.51921,0.66281,297.17,#33,-0.7264,0.63953,0.25168,350.26,0.49157,0.22754,0.84058,551.91,0.48031,0.73432,-0.47967,245.52,#34,-0.83035,0.52991,-0.1724,389.88,0.43123,0.41511,-0.80107,565.51,-0.35293,-0.73951,-0.5732,236.22,#35,0.51479,0.1408,0.84567,351.64,0.021873,-0.98826,0.15123,551.55,0.85704,-0.059354,-0.51183,245.47
    17687 
    17688 > view matrix models
    17689 > #24,-0.7967,0.19415,-0.57234,552.53,-0.38408,-0.89383,0.23142,763.66,-0.46664,0.4042,0.78668,47.764,#26,-0.54022,-0.4948,-0.68069,333.9,-0.24751,-0.67968,0.69049,538.06,-0.80431,0.54149,0.24471,259.14,#27,0.57144,0.72765,-0.37945,320.11,-0.15905,-0.35541,-0.92108,568.72,-0.80508,0.5867,-0.08736,236.79,#28,-0.66506,0.24155,-0.70665,388.38,0.71753,0.46898,-0.51499,577.02,0.20701,-0.84954,-0.48522,210.07,#29,0.44062,0.89381,0.083438,270.68,0.80654,-0.43497,0.40036,546.29,0.39414,-0.10911,-0.91255,187.09,#30,0.6918,-0.076025,0.71808,300.23,-0.15332,0.9563,0.24896,587.92,-0.70562,-0.28233,0.64991,219.19,#31,-0.59039,-0.5221,-0.61551,376.61,0.79157,-0.52353,-0.31518,814.32,-0.15768,-0.6733,0.72236,505.5,#32,0.10501,0.73958,0.66482,281.14,-0.83538,0.4283,-0.34452,485.4,-0.53955,-0.51921,0.66281,261.13,#33,-0.7264,0.63953,0.25168,290.87,0.49157,0.22754,0.84058,509.83,0.48031,0.73432,-0.47967,209.48,#34,-0.83035,0.52991,-0.1724,330.5,0.43123,0.41511,-0.80107,523.43,-0.35293,-0.73951,-0.5732,200.18,#35,0.51479,0.1408,0.84567,292.25,0.021873,-0.98826,0.15123,509.47,0.85704,-0.059354,-0.51183,209.43
    17690 
    17691 > ui mousemode right "rotate selected models"
    17692 
    17693 > view matrix models
    17694 > #24,0.064795,0.61102,-0.78896,326.29,-0.9979,0.039752,-0.051169,765.51,9.7563e-05,0.79062,0.61231,-95.601,#26,0.23127,0.036911,-0.97219,297.56,-0.88769,-0.40093,-0.22639,601.14,-0.39814,0.91536,-0.059957,244.3,#27,0.74139,0.40819,0.53266,276.32,0.066608,0.74506,-0.66367,590.1,-0.66776,0.52751,0.52519,211.79,#28,-0.96923,0.11498,0.21765,316.26,-0.22094,-0.016543,-0.97515,637.9,-0.10852,-0.99323,0.041439,172.24,#29,-0.53853,0.83537,0.11016,287.67,0.81153,0.5494,-0.19897,519.5,-0.22673,-0.017757,-0.9738,194.38,#30,0.75931,-0.64606,-0.077769,258.65,0.21258,0.13332,0.96801,572.24,-0.61503,-0.75155,0.23857,190.75,#31,-0.839,0.39576,-0.37344,11.998,-0.29495,-0.9075,-0.29909,838.24,-0.45726,-0.14079,0.87812,277.18,#32,0.90195,0.27047,0.33666,309.08,-0.43143,0.53,0.73005,540.43,0.019024,-0.80371,0.59472,286.04,#33,-0.94115,-0.13645,-0.30921,316.57,-0.22722,0.93272,0.27999,533.93,0.2502,0.33378,-0.90884,228.94,#34,-0.61301,0.26067,0.74583,330.63,-0.70183,0.25385,-0.66557,567.37,-0.36282,-0.93146,0.027329,206,#35,-0.095711,0.84175,0.53131,317.58,0.81403,-0.241,0.52846,534.94,0.57288,0.48308,-0.66215,228.83
    17695 
    17696 > view matrix models
    17697 > #24,-0.079237,0.63095,-0.77176,349.82,-0.99628,-0.023895,0.082754,750.03,0.033772,0.77545,0.6305,-103.62,#26,0.090816,0.0029796,-0.99586,306.72,-0.92395,-0.37286,-0.085374,602.39,-0.37157,0.92788,-0.031108,242.38,#27,0.72546,0.5247,0.44542,283.27,-0.062369,0.69462,-0.71667,593.51,-0.68543,0.49214,0.53664,210.74,#28,-0.99343,0.085273,0.076335,328.6,-0.081952,-0.064437,-0.99455,633.76,-0.07989,-0.99427,0.071002,168.69,#29,-0.42215,0.90487,0.054804,283.9,0.87321,0.42213,-0.24354,521.49,-0.24351,-0.054957,-0.96834,195.59,#30,0.76554,-0.63974,0.068381,262.67,0.081081,0.20137,0.97615,577.73,-0.63825,-0.74175,0.20602,190.73,#31,-0.88439,0.25747,-0.38932,59.14,-0.18501,-0.95915,-0.21404,879.17,-0.42852,-0.11727,0.89589,273.03,#32,0.83081,0.32258,0.45355,310.49,-0.55636,0.45964,0.69223,542,0.01483,-0.82745,0.56135,285.98,#33,-0.95713,0.0077596,-0.28956,315.47,-0.080852,0.95275,0.29278,532.69,0.27815,0.30364,-0.91128,228.99,#34,-0.71679,0.26986,0.64295,333.58,-0.61707,0.1839,-0.76512,562.99,-0.32471,-0.94518,0.034702,204.59,#35,0.037299,0.81081,0.58412,316.61,0.83706,-0.34463,0.42493,533.53,0.54584,0.47309,-0.69155,228.82
    17698 
    17699 > ui mousemode right "translate selected models"
    17700 
    17701 > view matrix models
    17702 > #24,-0.079237,0.63095,-0.77176,256.54,-0.99628,-0.023895,0.082754,608.43,0.033772,0.77545,0.6305,-54.049,#26,0.090816,0.0029796,-0.99586,213.44,-0.92395,-0.37286,-0.085374,460.79,-0.37157,0.92788,-0.031108,291.96,#27,0.72546,0.5247,0.44542,189.99,-0.062369,0.69462,-0.71667,451.9,-0.68543,0.49214,0.53664,260.32,#28,-0.99343,0.085273,0.076335,235.32,-0.081952,-0.064437,-0.99455,492.15,-0.07989,-0.99427,0.071002,218.26,#29,-0.42215,0.90487,0.054804,190.62,0.87321,0.42213,-0.24354,379.89,-0.24351,-0.054957,-0.96834,245.16,#30,0.76554,-0.63974,0.068381,169.39,0.081081,0.20137,0.97615,436.13,-0.63825,-0.74175,0.20602,240.3,#31,-0.88439,0.25747,-0.38932,-34.139,-0.18501,-0.95915,-0.21404,737.56,-0.42852,-0.11727,0.89589,322.6,#32,0.83081,0.32258,0.45355,217.21,-0.55636,0.45964,0.69223,400.4,0.01483,-0.82745,0.56135,335.55,#33,-0.95713,0.0077596,-0.28956,222.19,-0.080852,0.95275,0.29278,391.08,0.27815,0.30364,-0.91128,278.56,#34,-0.71679,0.26986,0.64295,240.3,-0.61707,0.1839,-0.76512,421.39,-0.32471,-0.94518,0.034702,254.16,#35,0.037299,0.81081,0.58412,223.33,0.83706,-0.34463,0.42493,391.93,0.54584,0.47309,-0.69155,278.4
    17703 
    17704 > view matrix models
    17705 > #24,-0.079237,0.63095,-0.77176,248.91,-0.99628,-0.023895,0.082754,603.8,0.033772,0.77545,0.6305,-56.726,#26,0.090816,0.0029796,-0.99586,205.8,-0.92395,-0.37286,-0.085374,456.16,-0.37157,0.92788,-0.031108,289.28,#27,0.72546,0.5247,0.44542,182.36,-0.062369,0.69462,-0.71667,447.28,-0.68543,0.49214,0.53664,257.64,#28,-0.99343,0.085273,0.076335,227.69,-0.081952,-0.064437,-0.99455,487.53,-0.07989,-0.99427,0.071002,215.59,#29,-0.42215,0.90487,0.054804,182.98,0.87321,0.42213,-0.24354,375.26,-0.24351,-0.054957,-0.96834,242.48,#30,0.76554,-0.63974,0.068381,161.76,0.081081,0.20137,0.97615,431.5,-0.63825,-0.74175,0.20602,237.63,#31,-0.88439,0.25747,-0.38932,-41.776,-0.18501,-0.95915,-0.21404,732.94,-0.42852,-0.11727,0.89589,319.92,#32,0.83081,0.32258,0.45355,209.57,-0.55636,0.45964,0.69223,395.77,0.01483,-0.82745,0.56135,332.87,#33,-0.95713,0.0077596,-0.28956,214.55,-0.080852,0.95275,0.29278,386.46,0.27815,0.30364,-0.91128,275.88,#34,-0.71679,0.26986,0.64295,232.66,-0.61707,0.1839,-0.76512,416.76,-0.32471,-0.94518,0.034702,251.48,#35,0.037299,0.81081,0.58412,215.7,0.83706,-0.34463,0.42493,387.3,0.54584,0.47309,-0.69155,275.72
    17706 
    17707 > view matrix models
    17708 > #24,-0.079237,0.63095,-0.77176,253.51,-0.99628,-0.023895,0.082754,609.19,0.033772,0.77545,0.6305,-55.25,#26,0.090816,0.0029796,-0.99586,210.41,-0.92395,-0.37286,-0.085374,461.54,-0.37157,0.92788,-0.031108,290.76,#27,0.72546,0.5247,0.44542,186.96,-0.062369,0.69462,-0.71667,452.66,-0.68543,0.49214,0.53664,259.12,#28,-0.99343,0.085273,0.076335,232.3,-0.081952,-0.064437,-0.99455,492.91,-0.07989,-0.99427,0.071002,217.06,#29,-0.42215,0.90487,0.054804,187.59,0.87321,0.42213,-0.24354,380.64,-0.24351,-0.054957,-0.96834,243.96,#30,0.76554,-0.63974,0.068381,166.37,0.081081,0.20137,0.97615,436.88,-0.63825,-0.74175,0.20602,239.1,#31,-0.88439,0.25747,-0.38932,-37.168,-0.18501,-0.95915,-0.21404,738.32,-0.42852,-0.11727,0.89589,321.4,#32,0.83081,0.32258,0.45355,214.18,-0.55636,0.45964,0.69223,401.16,0.01483,-0.82745,0.56135,334.35,#33,-0.95713,0.0077596,-0.28956,219.16,-0.080852,0.95275,0.29278,391.84,0.27815,0.30364,-0.91128,277.36,#34,-0.71679,0.26986,0.64295,237.27,-0.61707,0.1839,-0.76512,422.15,-0.32471,-0.94518,0.034702,252.96,#35,0.037299,0.81081,0.58412,220.3,0.83706,-0.34463,0.42493,392.68,0.54584,0.47309,-0.69155,277.2
    17709 
    17710 > ui mousemode right "rotate selected models"
    17711 
    17712 > view matrix models
    17713 > #24,-0.15955,0.55814,-0.81426,294.69,-0.98245,-0.17053,0.075611,637.6,-0.096654,0.81203,0.57555,-22.917,#26,0.04986,-0.10598,-0.99312,210.58,-0.87816,-0.47832,0.0069562,454.62,-0.47576,0.87177,-0.11692,297.74,#27,0.77459,0.53317,0.34019,189.32,-0.044902,0.58289,-0.81131,451.63,-0.63086,0.61316,0.47545,263.55,#28,-0.98624,0.16513,-0.0080943,241.11,0.01587,0.04582,-0.99882,492.4,-0.16457,-0.98521,-0.04781,230.4,#29,-0.33004,0.93648,0.11863,185.61,0.92958,0.34429,-0.13171,382.12,-0.16419,0.066807,-0.98416,239.64,#30,0.82157,-0.55588,0.12657,169.35,0.087902,0.34288,0.93526,440.2,-0.56329,-0.75726,0.33056,240.23,#31,-0.85602,0.19076,-0.48045,-16.297,-0.054621,-0.95759,-0.2829,746.59,-0.51404,-0.21592,0.83014,343.75,#32,0.78037,0.42749,0.45637,205.86,-0.62526,0.52365,0.57865,389.43,0.00839,-0.73691,0.67594,333.63,#33,-0.98088,0.05614,-0.18635,214.97,-0.028398,0.90596,0.42241,386.48,0.19254,0.41963,-0.88704,276.47,#34,-0.73229,0.36368,0.57575,237.43,-0.50897,0.26941,-0.81753,417.74,-0.45243,-0.89172,-0.012189,257.48,#35,0.055605,0.73768,0.67286,216.19,0.7604,-0.46803,0.45027,387.24,0.64707,0.48661,-0.58695,276.5
    17714 
    17715 > ui mousemode right "translate selected models"
    17716 
    17717 > view matrix models
    17718 > #24,-0.15955,0.55814,-0.81426,297.63,-0.98245,-0.17053,0.075611,637.24,-0.096654,0.81203,0.57555,-31.774,#26,0.04986,-0.10598,-0.99312,213.52,-0.87816,-0.47832,0.0069562,454.26,-0.47576,0.87177,-0.11692,288.88,#27,0.77459,0.53317,0.34019,192.26,-0.044902,0.58289,-0.81131,451.26,-0.63086,0.61316,0.47545,254.7,#28,-0.98624,0.16513,-0.0080943,244.05,0.01587,0.04582,-0.99882,492.03,-0.16457,-0.98521,-0.04781,221.54,#29,-0.33004,0.93648,0.11863,188.55,0.92958,0.34429,-0.13171,381.76,-0.16419,0.066807,-0.98416,230.78,#30,0.82157,-0.55588,0.12657,172.28,0.087902,0.34288,0.93526,439.83,-0.56329,-0.75726,0.33056,231.37,#31,-0.85602,0.19076,-0.48045,-13.363,-0.054621,-0.95759,-0.2829,746.23,-0.51404,-0.21592,0.83014,334.89,#32,0.78037,0.42749,0.45637,208.79,-0.62526,0.52365,0.57865,389.06,0.00839,-0.73691,0.67594,324.78,#33,-0.98088,0.05614,-0.18635,217.91,-0.028398,0.90596,0.42241,386.12,0.19254,0.41963,-0.88704,267.61,#34,-0.73229,0.36368,0.57575,240.36,-0.50897,0.26941,-0.81753,417.37,-0.45243,-0.89172,-0.012189,248.62,#35,0.055605,0.73768,0.67286,219.12,0.7604,-0.46803,0.45027,386.87,0.64707,0.48661,-0.58695,267.64
    17719 
    17720 > ui mousemode right "rotate selected models"
    17721 
    17722 > view matrix models
    17723 > #24,-0.20627,0.605,-0.76904,288.7,-0.97387,-0.20327,0.10129,636.67,-0.095037,0.76984,0.63112,-35.182,#26,-0.019225,-0.065613,-0.99766,219.29,-0.87338,-0.4846,0.0487,453.21,-0.48666,0.87227,-0.047988,288.71,#27,0.72698,0.59761,0.33819,195.63,-0.068306,0.553,-0.83038,451.52,-0.68326,0.58056,0.44284,256.04,#28,-0.9937,0.098919,-0.052625,246.66,0.057928,0.051525,-0.99699,490.56,-0.09591,-0.99376,-0.05693,219.79,#29,-0.30182,0.95229,0.045299,187.42,0.9442,0.30516,-0.12397,382.52,-0.13188,0.0053536,-0.99125,231.76,#30,0.78393,-0.59187,0.18749,173.65,0.06162,0.37467,0.92511,441.2,-0.61779,-0.71366,0.33019,234.04,#31,-0.89079,0.13577,-0.43366,8.3596,-0.013365,-0.96174,-0.27364,753.54,-0.45422,-0.23796,0.85852,353.13,#32,0.7526,0.39721,0.52518,214.35,-0.65645,0.51515,0.55109,387.82,-0.05165,-0.7595,0.64845,324.2,#33,-0.9657,0.12218,-0.22914,219.39,0.0089735,0.89757,0.44079,385.23,0.25952,0.42361,-0.86787,266.52,#34,-0.78201,0.31248,0.53928,241.76,-0.4731,0.26569,-0.83999,415.78,-0.40576,-0.91201,-0.059934,246.33,#35,0.13124,0.74934,0.64905,220.64,0.74929,-0.50366,0.42999,385.93,0.64911,0.42989,-0.62757,266.47
    17724 
    17725 > ui mousemode right "translate selected models"
    17726 
    17727 > view matrix models
    17728 > #24,-0.20627,0.605,-0.76904,281.39,-0.97387,-0.20327,0.10129,639.75,-0.095037,0.76984,0.63112,-43.426,#26,-0.019225,-0.065613,-0.99766,211.99,-0.87338,-0.4846,0.0487,456.3,-0.48666,0.87227,-0.047988,280.46,#27,0.72698,0.59761,0.33819,188.33,-0.068306,0.553,-0.83038,454.6,-0.68326,0.58056,0.44284,247.8,#28,-0.9937,0.098919,-0.052625,239.36,0.057928,0.051525,-0.99699,493.65,-0.09591,-0.99376,-0.05693,211.55,#29,-0.30182,0.95229,0.045299,180.12,0.9442,0.30516,-0.12397,385.61,-0.13188,0.0053536,-0.99125,223.52,#30,0.78393,-0.59187,0.18749,166.34,0.06162,0.37467,0.92511,444.28,-0.61779,-0.71366,0.33019,225.8,#31,-0.89079,0.13577,-0.43366,1.0575,-0.013365,-0.96174,-0.27364,756.63,-0.45422,-0.23796,0.85852,344.89,#32,0.7526,0.39721,0.52518,207.04,-0.65645,0.51515,0.55109,390.9,-0.05165,-0.7595,0.64845,315.95,#33,-0.9657,0.12218,-0.22914,212.09,0.0089735,0.89757,0.44079,388.31,0.25952,0.42361,-0.86787,258.28,#34,-0.78201,0.31248,0.53928,234.46,-0.4731,0.26569,-0.83999,418.87,-0.40576,-0.91201,-0.059934,238.08,#35,0.13124,0.74934,0.64905,213.33,0.74929,-0.50366,0.42999,389.02,0.64911,0.42989,-0.62757,258.23
    17729 
    17730 > ui mousemode right "rotate selected models"
    17731 
    17732 > view matrix models
    17733 > #24,-0.23797,0.61098,-0.75503,284.1,-0.964,-0.24351,0.10678,644.68,-0.11862,0.75326,0.64694,-38.254,#26,-0.054368,-0.066273,-0.99632,214.37,-0.85818,-0.50699,0.080554,454.29,-0.51047,0.8594,-0.02931,281.54,#27,0.71316,0.62398,0.31946,190.13,-0.071046,0.51771,-0.8526,454.25,-0.6974,0.58534,0.41354,249.25,#28,-0.99287,0.084099,-0.084515,241.75,0.091016,0.076736,-0.99289,492.73,-0.077016,-0.9935,-0.083843,213.23,#29,-0.27446,0.96127,0.0251,179.38,0.95636,0.2756,-0.097036,386.26,-0.1002,-0.0026286,-0.99496,223.2,#30,0.77519,-0.5916,0.22156,167.48,0.05516,0.41277,0.90916,445.23,-0.62932,-0.69255,0.35261,227.36,#31,-0.89813,0.10188,-0.42776,13.962,0.026834,-0.95828,-0.28457,758.97,-0.4389,-0.26706,0.85793,357.98,#32,0.73089,0.40047,0.55266,207.98,-0.67743,0.52416,0.51608,388.09,-0.083007,-0.75158,0.6544,315.27,#33,-0.96055,0.15698,-0.22958,211.99,0.031131,0.88099,0.47212,386.99,0.27637,0.44634,-0.85112,257.46,#34,-0.80291,0.30553,0.51185,234.97,-0.43721,0.28185,-0.85405,417.41,-0.4052,-0.90951,-0.092718,237.75,#35,0.16513,0.7403,0.65168,213.26,0.72614,-0.53839,0.42762,387.65,0.66742,0.4026,-0.62647,257.41
    17734 
    17735 > view matrix models
    17736 > #24,-0.25271,0.58987,-0.76694,294.1,-0.96085,-0.24606,0.12735,640.19,-0.11359,0.7691,0.62896,-38.801,#26,-0.058701,-0.094196,-0.99382,213.96,-0.86265,-0.49623,0.097986,454.61,-0.50239,0.86307,-0.052129,281.38,#27,0.72683,0.62029,0.29488,190.44,-0.09144,0.51291,-0.85356,454.65,-0.6807,0.59343,0.42952,248.57,#28,-0.98914,0.10717,-0.1006,243.52,0.10786,0.064268,-0.99209,491.81,-0.099856,-0.99216,-0.07513,213.29,#29,-0.25488,0.96592,0.045084,179.04,0.95994,0.25836,-0.10843,386.58,-0.11638,0.015642,-0.99308,223.01,#30,0.78963,-0.56877,0.2302,168.12,0.034382,0.4156,0.9089,445.8,-0.61262,-0.70978,0.34772,226.28,#31,-0.88769,0.090349,-0.45148,17.477,0.038012,-0.96283,-0.26742,763.65,-0.45886,-0.25455,0.85126,350.14,#32,0.72016,0.42621,0.54746,205.64,-0.69124,0.50862,0.51332,388.92,-0.059665,-0.7481,0.6609,315.66,#33,-0.96564,0.16308,-0.20235,210.9,0.051306,0.88291,0.46673,387.11,0.25477,0.44031,-0.86094,257.97,#34,-0.80163,0.33038,0.49824,234.85,-0.42726,0.26631,-0.86402,416.89,-0.41814,-0.9055,-0.072326,238.45,#35,0.1636,0.72147,0.67284,212.18,0.73039,-0.54704,0.40899,387.75,0.66315,0.42453,-0.61645,257.94
    17737 
    17738 > surface dust #24 size 25.5
    17739 
    17740 > volume #24 level 0.003298
    17741 
    17742 > view matrix models
    17743 > #24,-0.42622,0.5442,-0.72263,332.63,-0.89756,-0.35402,0.26279,617.26,-0.11281,0.7606,0.63934,-39.592,#26,-0.22234,-0.17294,-0.95951,223.78,-0.83467,-0.47485,0.279,447.94,-0.50388,0.86291,-0.038775,281.12,#27,0.68915,0.71126,0.13848,200.26,-0.21986,0.38735,-0.89533,452.45,-0.69046,0.58657,0.42332,248.62,#28,-0.95369,0.10478,-0.28196,258.81,0.28808,0.048508,-0.95638,479.41,-0.086532,-0.99331,-0.076447,212.74,#29,-0.075729,0.99706,0.012037,176.23,0.99099,0.076595,-0.10985,387.76,-0.11045,0.0036097,-0.99387,223.03,#30,0.77483,-0.49159,0.39747,176.41,-0.10805,0.51651,0.84944,447.97,-0.62287,-0.70111,0.34709,226.6,#31,-0.87127,-0.091137,-0.48227,88.242,0.20261,-0.96176,-0.18429,787.43,-0.44703,-0.25828,0.85642,353.28,#32,0.58021,0.503,0.64059,203.97,-0.81137,0.42551,0.40077,384.71,-0.070989,-0.75228,0.655,315.33,#33,-0.93655,0.32788,-0.12393,208.08,0.22639,0.83575,0.50027,382.26,0.26761,0.44048,-0.85695,257.58,#34,-0.87159,0.36235,0.3302,236.84,-0.27075,0.20571,-0.94041,407.24,-0.40869,-0.90906,-0.081188,237.82,#35,0.30316,0.61401,0.72876,209.45,0.6846,-0.67231,0.28165,382.65,0.66288,0.41352,-0.62417,257.53
    17744 
    17745 > view matrix models
    17746 > #24,-0.44369,0.54391,-0.71225,334.35,-0.88683,-0.38099,0.2615,620.47,-0.12913,0.74767,0.6514,-36.004,#26,-0.24197,-0.17446,-0.95447,225.07,-0.81888,-0.49094,0.29734,445.97,-0.52046,0.85354,-0.024072,281.78,#27,0.67915,0.72321,0.12542,201.37,-0.21682,0.36092,-0.90704,451.65,-0.70125,0.58882,0.40193,249.6,#28,-0.94888,0.097328,-0.30025,260.11,0.30739,0.068968,-0.94908,478.34,-0.071664,-0.99286,-0.09536,213.82,#29,-0.058289,0.9983,0.0016662,175.93,0.99445,0.058211,-0.087614,388.01,-0.087562,-0.0034501,-0.99615,222.78,#30,0.76744,-0.4878,0.41603,177.26,-0.10815,0.54111,0.83397,448.1,-0.63193,-0.68502,0.36251,227.7,#31,-0.87109,-0.11109,-0.4784,96.455,0.22857,-0.95386,-0.19469,786.18,-0.4347,-0.27894,0.85629,362.72,#32,0.56447,0.50447,0.65337,204.38,-0.82006,0.43308,0.3741,382.36,-0.094243,-0.74696,0.65815,314.75,#33,-0.92993,0.34698,-0.12183,207.96,0.23742,0.81945,0.52166,381.14,0.28084,0.45618,-0.84441,256.91,#34,-0.87985,0.35846,0.31203,237.02,-0.24545,0.21948,-0.94424,406.03,-0.40696,-0.90738,-0.10513,237.46,#35,0.32133,0.6049,0.72859,209.34,0.66381,-0.6926,0.28225,381.51,0.67535,0.39295,-0.62409,256.86
    17747 
    17748 > ui mousemode right "translate selected models"
    17749 
    17750 > view matrix models
    17751 > #24,-0.44369,0.54391,-0.71225,331.18,-0.88683,-0.38099,0.2615,619.06,-0.12913,0.74767,0.6514,-31.499,#26,-0.24197,-0.17446,-0.95447,221.91,-0.81888,-0.49094,0.29734,444.56,-0.52046,0.85354,-0.024072,286.28,#27,0.67915,0.72321,0.12542,198.2,-0.21682,0.36092,-0.90704,450.24,-0.70125,0.58882,0.40193,254.11,#28,-0.94888,0.097328,-0.30025,256.94,0.30739,0.068968,-0.94908,476.93,-0.071664,-0.99286,-0.09536,218.33,#29,-0.058289,0.9983,0.0016662,172.77,0.99445,0.058211,-0.087614,386.6,-0.087562,-0.0034501,-0.99615,227.29,#30,0.76744,-0.4878,0.41603,174.09,-0.10815,0.54111,0.83397,446.69,-0.63193,-0.68502,0.36251,232.2,#31,-0.87109,-0.11109,-0.4784,93.29,0.22857,-0.95386,-0.19469,784.78,-0.4347,-0.27894,0.85629,367.22,#32,0.56447,0.50447,0.65337,201.22,-0.82006,0.43308,0.3741,380.95,-0.094243,-0.74696,0.65815,319.25,#33,-0.92993,0.34698,-0.12183,204.8,0.23742,0.81945,0.52166,379.73,0.28084,0.45618,-0.84441,261.42,#34,-0.87985,0.35846,0.31203,233.85,-0.24545,0.21948,-0.94424,404.62,-0.40696,-0.90738,-0.10513,241.97,#35,0.32133,0.6049,0.72859,206.18,0.66381,-0.6926,0.28225,380.1,0.67535,0.39295,-0.62409,261.37
    17752 
    17753 > view matrix models
    17754 > #24,-0.44369,0.54391,-0.71225,328.37,-0.88683,-0.38099,0.2615,618.57,-0.12913,0.74767,0.6514,-33.493,#26,-0.24197,-0.17446,-0.95447,219.1,-0.81888,-0.49094,0.29734,444.08,-0.52046,0.85354,-0.024072,284.29,#27,0.67915,0.72321,0.12542,195.39,-0.21682,0.36092,-0.90704,449.76,-0.70125,0.58882,0.40193,252.11,#28,-0.94888,0.097328,-0.30025,254.13,0.30739,0.068968,-0.94908,476.44,-0.071664,-0.99286,-0.09536,216.33,#29,-0.058289,0.9983,0.0016662,169.96,0.99445,0.058211,-0.087614,386.11,-0.087562,-0.0034501,-0.99615,225.3,#30,0.76744,-0.4878,0.41603,171.28,-0.10815,0.54111,0.83397,446.2,-0.63193,-0.68502,0.36251,230.21,#31,-0.87109,-0.11109,-0.4784,90.478,0.22857,-0.95386,-0.19469,784.29,-0.4347,-0.27894,0.85629,365.23,#32,0.56447,0.50447,0.65337,198.4,-0.82006,0.43308,0.3741,380.47,-0.094243,-0.74696,0.65815,317.26,#33,-0.92993,0.34698,-0.12183,201.99,0.23742,0.81945,0.52166,379.24,0.28084,0.45618,-0.84441,259.42,#34,-0.87985,0.35846,0.31203,231.04,-0.24545,0.21948,-0.94424,404.13,-0.40696,-0.90738,-0.10513,239.97,#35,0.32133,0.6049,0.72859,203.37,0.66381,-0.6926,0.28225,379.62,0.67535,0.39295,-0.62409,259.37
    17755 
    17756 > select subtract #35
    17757 
    17758 39361 atoms, 40096 bonds, 1 pseudobond, 4960 residues, 12 models selected 
    17759 
    17760 > select subtract #34
    17761 
    17762 36994 atoms, 37698 bonds, 1 pseudobond, 4662 residues, 11 models selected 
    17763 
    17764 > select subtract #33
    17765 
    17766 35574 atoms, 36257 bonds, 1 pseudobond, 4485 residues, 10 models selected 
    17767 
    17768 > select subtract #32
    17769 
    17770 28901 atoms, 29471 bonds, 3632 residues, 8 models selected 
    17771 
    17772 > select subtract #31
    17773 
    17774 27439 atoms, 27990 bonds, 3453 residues, 7 models selected 
    17775 
    17776 > select subtract #30
    17777 
    17778 20225 atoms, 20617 bonds, 2548 residues, 6 models selected 
    17779 
    17780 > select subtract #29
    17781 
    17782 18768 atoms, 19134 bonds, 2367 residues, 5 models selected 
    17783 
    17784 > select subtract #28
    17785 
    17786 17311 atoms, 17651 bonds, 2186 residues, 4 models selected 
    17787 
    17788 > select subtract #27
    17789 
    17790 9810 atoms, 10032 bonds, 1233 residues, 3 models selected 
    17791 
    17792 > select subtract #26
    17793 
    17794 2 models selected 
    17795 
    17796 > select subtract #24
    17797 
    17798 Nothing selected 
    17799 
    17800 > hide #!25 models
    17801 
    17802 > show #!25 models
    17803 
    17804 > show #!13 models
    17805 
    17806 > hide #!25 models
    17807 
    17808 > show #!25 models
    17809 
    17810 > hide #!25 models
    17811 
    17812 > show #!25 models
    17813 
    17814 > hide #!25 models
    17815 
    17816 > fitmap #24 inMap #13
    17817 
    17818 Fit map postprocess_20231221.mrc in map COPI_golph_linkage1_postprocess.mrc
    17819 using 28339 points 
    17820 correlation = 0.8323, correlation about mean = 0.2096, overlap = 68.68 
    17821 steps = 112, shift = 2.95, angle = 9.66 degrees 
    17822  
    17823 Position of postprocess_20231221.mrc (#24) relative to
    17824 COPI_golph_linkage1_postprocess.mrc (#13) coordinates: 
    17825 Matrix rotation and translation 
    17826 0.36066969 0.89499066 -0.26250545 -65.24306892 
    17827 -0.85377429 0.20350072 -0.47922534 385.94731508 
    17828 -0.37548216 0.39696246 0.83751655 73.99878724 
    17829 Axis 0.44720647 0.05766334 -0.89257006 
    17830 Axis point 253.82839871 217.75653073 0.00000000 
    17831 Rotation angle (degrees) 78.41371225 
    17832 Shift along axis -72.97121361 
    17833  
    17834 
    17835 > hide #!13 models
    17836 
    17837 > show #26 models
    17838 
    17839 > fitmap #26 inMap #24
    17840 
    17841 Fit molecule copy of CopA_F8WHL2.pdb (#26) to map postprocess_20231221.mrc
    17842 (#24) using 9810 atoms 
    17843 average map value = 0.002311, steps = 200 
    17844 shifted from previous position = 33.3 
    17845 rotated from previous position = 39.3 degrees 
    17846 atoms outside contour = 8189, contour level = 0.0032978 
    17847  
    17848 Position of copy of CopA_F8WHL2.pdb (#26) relative to postprocess_20231221.mrc
    17849 (#24) coordinates: 
    17850 Matrix rotation and translation 
    17851 0.48919129 0.86758904 -0.08933718 173.66417465 
    17852 -0.80858149 0.41274017 -0.41933461 228.33852434 
    17853 -0.32693707 0.27737122 0.90342534 208.22971501 
    17854 Axis 0.38057152 0.12978756 -0.91559844 
    17855 Axis point 331.49964154 -46.63271772 0.00000000 
    17856 Rotation angle (degrees) 66.25427443 
    17857 Shift along axis -94.92766211 
    17858  
    17859 
    17860 > ui mousemode right zoom
    17861 
    17862 > select add #26
    17863 
    17864 9810 atoms, 10032 bonds, 1233 residues, 1 model selected 
    17865 
    17866 > ui mousemode right "translate selected models"
    17867 
    17868 > view matrix models
    17869 > #26,-0.24197,-0.17446,-0.95447,216.08,-0.81888,-0.49094,0.29734,444.7,-0.52046,0.85354,-0.024072,295.63
    17870 
    17871 > fitmap #26 inMap #24
    17872 
    17873 Fit molecule copy of CopA_F8WHL2.pdb (#26) to map postprocess_20231221.mrc
    17874 (#24) using 9810 atoms 
    17875 average map value = 0.002292, steps = 176 
    17876 shifted from previous position = 37.9 
    17877 rotated from previous position = 36.6 degrees 
    17878 atoms outside contour = 8069, contour level = 0.0032978 
    17879  
    17880 Position of copy of CopA_F8WHL2.pdb (#26) relative to postprocess_20231221.mrc
    17881 (#24) coordinates: 
    17882 Matrix rotation and translation 
    17883 0.52204018 0.84544209 0.11270182 168.13915738 
    17884 -0.70595342 0.50245145 -0.49917162 232.28140646 
    17885 -0.47864789 0.18102540 0.85914258 210.96232275 
    17886 Axis 0.37910664 0.32958775 -0.86466761 
    17887 Axis point 359.09123453 -14.75335760 -0.00000000 
    17888 Rotation angle (degrees) 63.78012245 
    17889 Shift along axis -42.11251195 
    17890  
    17891 
    17892 > show #27 models
    17893 
    17894 > select subtract #26
    17895 
    17896 Nothing selected 
    17897 
    17898 > select add #27
    17899 
    17900 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    17901 
    17902 > view matrix models
    17903 > #27,0.67915,0.72321,0.12542,188.54,-0.21682,0.36092,-0.90704,442.68,-0.70125,0.58882,0.40193,246.42
    17904 
    17905 > fitmap #26 inMap #24
    17906 
    17907 Fit molecule copy of CopA_F8WHL2.pdb (#26) to map postprocess_20231221.mrc
    17908 (#24) using 9810 atoms 
    17909 average map value = 0.002292, steps = 176 
    17910 shifted from previous position = 37.9 
    17911 rotated from previous position = 36.6 degrees 
    17912 atoms outside contour = 8069, contour level = 0.0032978 
    17913  
    17914 Position of copy of CopA_F8WHL2.pdb (#26) relative to postprocess_20231221.mrc
    17915 (#24) coordinates: 
    17916 Matrix rotation and translation 
    17917 0.52204018 0.84544209 0.11270182 168.13915738 
    17918 -0.70595342 0.50245145 -0.49917162 232.28140646 
    17919 -0.47864789 0.18102540 0.85914258 210.96232275 
    17920 Axis 0.37910664 0.32958775 -0.86466761 
    17921 Axis point 359.09123453 -14.75335760 0.00000000 
    17922 Rotation angle (degrees) 63.78012245 
    17923 Shift along axis -42.11251195 
    17924  
    17925 
    17926 > fitmap #27 inMap #24
    17927 
    17928 Fit molecule copy of CopB_Q9JIF7.pdb (#27) to map postprocess_20231221.mrc
    17929 (#24) using 7501 atoms 
    17930 average map value = 0.002632, steps = 80 
    17931 shifted from previous position = 7.07 
    17932 rotated from previous position = 8.79 degrees 
    17933 atoms outside contour = 5370, contour level = 0.0032978 
    17934  
    17935 Position of copy of CopB_Q9JIF7.pdb (#27) relative to postprocess_20231221.mrc
    17936 (#24) coordinates: 
    17937 Matrix rotation and translation 
    17938 0.05510091 -0.66182875 0.74762731 172.62310921 
    17939 -0.01234173 0.74825620 0.66329506 209.73384589 
    17940 -0.99840451 -0.04577518 0.03306149 233.19971501 
    17941 Axis -0.35572697 0.87595076 0.32583521 
    17942 Axis point 217.55626143 0.00000000 -50.28320725 
    17943 Rotation angle (degrees) 94.69150286 
    17944 Shift along axis 198.29450426 
    17945  
    17946 
    17947 > select subtract #27
    17948 
    17949 Nothing selected 
    17950 
    17951 > hide #26 models
    17952 
    17953 > show #26 models
    17954 
    17955 > show #28 models
    17956 
    17957 > fitmap #28 inMap #24
    17958 
    17959 Fit molecule copy of hArf1_P84078 (#28) to map postprocess_20231221.mrc (#24)
    17960 using 1457 atoms 
    17961 average map value = 0.002587, steps = 88 
    17962 shifted from previous position = 12.8 
    17963 rotated from previous position = 9.62 degrees 
    17964 atoms outside contour = 1280, contour level = 0.0032978 
    17965  
    17966 Position of copy of hArf1_P84078 (#28) relative to postprocess_20231221.mrc
    17967 (#24) coordinates: 
    17968 Matrix rotation and translation 
    17969 0.15689372 0.02394020 0.98732528 126.73150289 
    17970 -0.68693840 -0.71561887 0.12651188 200.57796539 
    17971 0.70957733 -0.69808057 -0.09583067 178.39248618 
    17972 Axis -0.73389363 0.24719782 -0.63268742 
    17973 Axis point 0.00000000 138.28668246 -15.53757163 
    17974 Rotation angle (degrees) 145.82012059 
    17975 Shift along axis -156.29169001 
    17976  
    17977 
    17978 > hide #28 models
    17979 
    17980 > show #29 models
    17981 
    17982 > fitmap #28 inMap #24
    17983 
    17984 Fit molecule copy of hArf1_P84078 (#28) to map postprocess_20231221.mrc (#24)
    17985 using 1457 atoms 
    17986 average map value = 0.002587, steps = 44 
    17987 shifted from previous position = 0.00728 
    17988 rotated from previous position = 0.0538 degrees 
    17989 atoms outside contour = 1280, contour level = 0.0032978 
    17990  
    17991 Position of copy of hArf1_P84078 (#28) relative to postprocess_20231221.mrc
    17992 (#24) coordinates: 
    17993 Matrix rotation and translation 
    17994 0.15769401 0.02392714 0.98719810 126.73595070 
    17995 -0.68651507 -0.71593579 0.12701565 200.57436049 
    17996 0.70980958 -0.69775599 -0.09647245 178.39967908 
    17997 Axis -0.73420556 0.24692919 -0.63243036 
    17998 Axis point 0.00000000 138.24458997 -15.45000257 
    17999 Rotation angle (degrees) 145.82819979 
    18000 Shift along axis -156.34794935 
    18001  
    18002 
    18003 > fitmap #28 inMap #24
    18004 
    18005 Fit molecule copy of hArf1_P84078 (#28) to map postprocess_20231221.mrc (#24)
    18006 using 1457 atoms 
    18007 average map value = 0.002588, steps = 44 
    18008 shifted from previous position = 0.0446 
    18009 rotated from previous position = 0.0231 degrees 
    18010 atoms outside contour = 1281, contour level = 0.0032978 
    18011  
    18012 Position of copy of hArf1_P84078 (#28) relative to postprocess_20231221.mrc
    18013 (#24) coordinates: 
    18014 Matrix rotation and translation 
    18015 0.15760567 0.02370579 0.98721754 126.69653215 
    18016 -0.68678014 -0.71571476 0.12682820 200.56618010 
    18017 0.70957274 -0.69799026 -0.09652004 178.41867472 
    18018 Axis -0.73416533 0.24712976 -0.63239872 
    18019 Axis point 0.00000000 138.26923718 -15.43472773 
    18020 Rotation angle (degrees) 145.82385973 
    18021 Shift along axis -156.28207120 
    18022  
    18023 
    18024 > fitmap #28 inMap #24
    18025 
    18026 Fit molecule copy of hArf1_P84078 (#28) to map postprocess_20231221.mrc (#24)
    18027 using 1457 atoms 
    18028 average map value = 0.002588, steps = 44 
    18029 shifted from previous position = 0.0351 
    18030 rotated from previous position = 0.0173 degrees 
    18031 atoms outside contour = 1279, contour level = 0.0032978 
    18032  
    18033 Position of copy of hArf1_P84078 (#28) relative to postprocess_20231221.mrc
    18034 (#24) coordinates: 
    18035 Matrix rotation and translation 
    18036 0.15786530 0.02378436 0.98717417 126.72606327 
    18037 -0.68665422 -0.71579568 0.12705318 200.57530670 
    18038 0.70963689 -0.69790460 -0.09666767 178.40234647 
    18039 Axis -0.73425942 0.24702399 -0.63233081 
    18040 Axis point 0.00000000 138.26041196 -15.43881299 
    18041 Rotation angle (degrees) 145.82227451 
    18042 Shift along axis -156.31219278 
    18043  
    18044 
    18045 > hide #29 models
    18046 
    18047 > show #30 models
    18048 
    18049 > fitmap #29 inMap #24
    18050 
    18051 Fit molecule copy of hArf1_P84078 (#29) to map postprocess_20231221.mrc (#24)
    18052 using 1457 atoms 
    18053 average map value = 0.003766, steps = 88 
    18054 shifted from previous position = 4.36 
    18055 rotated from previous position = 9.68 degrees 
    18056 atoms outside contour = 619, contour level = 0.0032978 
    18057  
    18058 Position of copy of hArf1_P84078 (#29) relative to postprocess_20231221.mrc
    18059 (#24) coordinates: 
    18060 Matrix rotation and translation 
    18061 -0.84461901 -0.49418276 0.20591772 243.00983013 
    18062 -0.47653853 0.51868237 -0.70984478 195.93867822 
    18063 0.24398717 -0.69767613 -0.67358612 220.56719229 
    18064 Axis 0.27853266 -0.87138535 0.40386523 
    18065 Axis point 151.40232781 0.00000000 157.23746430 
    18066 Rotation angle (degrees) 178.74831937 
    18067 Shift along axis -13.97250052 
    18068  
    18069 
    18070 > show #29 models
    18071 
    18072 > hide #29 models
    18073 
    18074 > fitmap #30 inMap #24
    18075 
    18076 Fit molecule copy of CopBprime_O55029.pdb (#30) to map
    18077 postprocess_20231221.mrc (#24) using 7214 atoms 
    18078 average map value = 0.00312, steps = 76 
    18079 shifted from previous position = 10.5 
    18080 rotated from previous position = 9.7 degrees 
    18081 atoms outside contour = 3971, contour level = 0.0032978 
    18082  
    18083 Position of copy of CopBprime_O55029.pdb (#30) relative to
    18084 postprocess_20231221.mrc (#24) coordinates: 
    18085 Matrix rotation and translation 
    18086 -0.16363982 -0.17476461 -0.97091675 188.45128193 
    18087 -0.01368357 -0.98368662 0.17936944 177.45916348 
    18088 -0.98642525 0.04263759 0.15857889 238.55628903 
    18089 Axis -0.64539813 0.07320281 0.76033059 
    18090 Axis point 189.46127810 85.46785517 0.00000000 
    18091 Rotation angle (degrees) 173.91934795 
    18092 Shift along axis 72.74604733 
    18093  
    18094 
    18095 > hide #30 models
    18096 
    18097 > show #31 models
    18098 
    18099 > fitmap #30 inMap #24
    18100 
    18101 Fit molecule copy of CopBprime_O55029.pdb (#30) to map
    18102 postprocess_20231221.mrc (#24) using 7214 atoms 
    18103 average map value = 0.00312, steps = 28 
    18104 shifted from previous position = 0.0174 
    18105 rotated from previous position = 0.041 degrees 
    18106 atoms outside contour = 3970, contour level = 0.0032978 
    18107  
    18108 Position of copy of CopBprime_O55029.pdb (#30) relative to
    18109 postprocess_20231221.mrc (#24) coordinates: 
    18110 Matrix rotation and translation 
    18111 -0.16311521 -0.17470792 -0.97101522 188.46021007 
    18112 -0.01416285 -0.98368049 0.17936583 177.45082967 
    18113 -0.98650537 0.04300963 0.15797888 238.54740741 
    18114 Axis -0.64560973 0.07334164 0.76013754 
    18115 Axis point 189.53840317 85.41525215 0.00000000 
    18116 Rotation angle (degrees) 173.93811101 
    18117 Shift along axis 72.67162994 
    18118  
    18119 
    18120 > fitmap #31 inMap #24
    18121 
    18122 Fit molecule copy of CopD_Q5XJY5 (#31) to map postprocess_20231221.mrc (#24)
    18123 using 1462 atoms 
    18124 average map value = 0.003728, steps = 132 
    18125 shifted from previous position = 9.68 
    18126 rotated from previous position = 9.66 degrees 
    18127 atoms outside contour = 817, contour level = 0.0032978 
    18128  
    18129 Position of copy of CopD_Q5XJY5 (#31) relative to postprocess_20231221.mrc
    18130 (#24) coordinates: 
    18131 Matrix rotation and translation 
    18132 0.23963491 0.93119401 0.27468678 -92.88764505 
    18133 -0.88602605 0.09409261 0.45398725 105.67552374 
    18134 0.39690421 -0.35217084 0.84761002 472.48286733 
    18135 Axis -0.40474615 -0.06136146 -0.91236798 
    18136 Axis point -102.55080352 189.86009943 0.00000000 
    18137 Rotation angle (degrees) 84.79791770 
    18138 Shift along axis -399.96672467 
    18139  
    18140 
    18141 > hide #31 models
    18142 
    18143 > show #!32 models
    18144 
    18145 > fitmap #32 inMap #24
    18146 
    18147 Fit molecule copy of CopG_Q9QZE5 (#32) to map postprocess_20231221.mrc (#24)
    18148 using 6673 atoms 
    18149 average map value = 0.003524, steps = 84 
    18150 shifted from previous position = 5.85 
    18151 rotated from previous position = 9.62 degrees 
    18152 atoms outside contour = 4302, contour level = 0.0032978 
    18153  
    18154 Position of copy of CopG_Q9QZE5 (#32) relative to postprocess_20231221.mrc
    18155 (#24) coordinates: 
    18156 Matrix rotation and translation 
    18157 0.48942633 -0.51114053 -0.70653890 223.51135443 
    18158 0.54869313 -0.44922702 0.70507513 282.31373609 
    18159 -0.67778884 -0.73275537 0.06059576 258.72093709 
    18160 Axis -0.80485009 -0.01609333 0.59325993 
    18161 Axis point 0.00000000 244.98810042 103.85799789 
    18162 Rotation angle (degrees) 116.71818112 
    18163 Shift along axis -30.94773883 
    18164  
    18165 
    18166 > hide #!32 models
    18167 
    18168 > show #33 models
    18169 
    18170 > fitmap #33 inMap #24
    18171 
    18172 Fit molecule copy of CopZ1_P61924.pdb (#33) to map postprocess_20231221.mrc
    18173 (#24) using 1420 atoms 
    18174 average map value = 0.003933, steps = 72 
    18175 shifted from previous position = 3.15 
    18176 rotated from previous position = 9.63 degrees 
    18177 atoms outside contour = 672, contour level = 0.0032978 
    18178  
    18179 Position of copy of CopZ1_P61924.pdb (#33) relative to
    18180 postprocess_20231221.mrc (#24) coordinates: 
    18181 Matrix rotation and translation 
    18182 0.16497815 -0.93975601 -0.29940085 230.48988127 
    18183 -0.38657680 0.21766036 -0.89620441 241.46049476 
    18184 0.90738117 0.26359557 -0.32737866 218.20338037 
    18185 Axis 0.65793032 -0.68458225 0.31380701 
    18186 Axis point 143.39347613 0.00000000 249.44869489 
    18187 Rotation angle (degrees) 118.18825327 
    18188 Shift along axis 54.82046417 
    18189  
    18190 
    18191 > hide #33 models
    18192 
    18193 > show #34 models
    18194 
    18195 > fitmap #34 inMap #24
    18196 
    18197 Fit molecule copy of Golph3_ Q9CRA5.pdb (#34) to map postprocess_20231221.mrc
    18198 (#24) using 2367 atoms 
    18199 average map value = 0.0031, steps = 68 
    18200 shifted from previous position = 7.53 
    18201 rotated from previous position = 9.65 degrees 
    18202 atoms outside contour = 1385, contour level = 0.0032978 
    18203  
    18204 Position of copy of Golph3_ Q9CRA5.pdb (#34) relative to
    18205 postprocess_20231221.mrc (#24) coordinates: 
    18206 Matrix rotation and translation 
    18207 0.66117593 -0.23521496 0.71240459 198.01003745 
    18208 -0.68849984 -0.56744326 0.45163715 233.20261117 
    18209 0.29801737 -0.78910207 -0.53712529 191.32274258 
    18210 Axis -0.89621613 0.29932197 -0.32741870 
    18211 Axis point 0.00000000 180.07492889 -4.25084707 
    18212 Rotation angle (degrees) 136.19470870 
    18213 Shift along axis -170.29976691 
    18214  
    18215 
    18216 > hide #34 models
    18217 
    18218 > show #35 models
    18219 
    18220 > fitmap #35 inMap #24
    18221 
    18222 Fit molecule copy of CopZ2_Q9CTG7.pdb (#35) to map postprocess_20231221.mrc
    18223 (#24) using 1463 atoms 
    18224 average map value = 0.003943, steps = 60 
    18225 shifted from previous position = 3.31 
    18226 rotated from previous position = 9.64 degrees 
    18227 atoms outside contour = 720, contour level = 0.0032978 
    18228  
    18229 Position of copy of CopZ2_Q9CTG7.pdb (#35) relative to
    18230 postprocess_20231221.mrc (#24) coordinates: 
    18231 Matrix rotation and translation 
    18232 -0.81858562 0.29511592 -0.49277197 229.58139340 
    18233 0.42681840 0.88664168 -0.17802420 242.04890220 
    18234 0.38437439 -0.35605219 -0.85175302 217.25843400 
    18235 Axis -0.19678808 -0.96957756 0.14558092 
    18236 Axis point 58.98360344 0.00000000 149.08497815 
    18237 Rotation angle (degrees) 153.10645180 
    18238 Shift along axis -248.23538238 
    18239  
    18240 
    18241 > hide #35 models
    18242 
    18243 > show #28 models
    18244 
    18245 > show #29 models
    18246 
    18247 > show #30 models
    18248 
    18249 > show #31 models
    18250 
    18251 > show #!32 models
    18252 
    18253 > show #33 models
    18254 
    18255 > show #34 models
    18256 
    18257 > show #35 models
    18258 
    18259 > show #!25 models
    18260 
    18261 > ui mousemode right zoom
    18262 
    18263 > show #!13 models
    18264 
    18265 > hide #3 models
    18266 
    18267 > hide #!2 models
    18268 
    18269 > show #!2 models
    18270 
    18271 > hide #!1 models
    18272 
    18273 > hide #!24 models
    18274 
    18275 > hide #26 models
    18276 
    18277 > hide #27 models
    18278 
    18279 > hide #28 models
    18280 
    18281 > hide #29 models
    18282 
    18283 > hide #30 models
    18284 
    18285 > hide #31 models
    18286 
    18287 > hide #!32 models
    18288 
    18289 > hide #33 models
    18290 
    18291 > hide #34 models
    18292 
    18293 > hide #35 models
    18294 
    18295 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    18296 > dataset/Chimera sessions/20240125_linkage_1_fitting.cxs"
    18297 
    18298 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    18299 > dataset/Structure files/postprocess_20231221.mrc"
    18300 
    18301 Opened postprocess_20231221.mrc as #36, grid size 156,156,156, pixel 2.55,
    18302 shown at level 0.00309, step 1, values float32 
    18303 
    18304 > color #36 #d6d6d6ff models
    18305 
    18306 > color #24 #d6d6d6ff models
    18307 
    18308 > rename #40 id #37
    18309 
    18310 > show #!37 models
    18311 
    18312 > hide #!36 models
    18313 
    18314 > show #!36 models
    18315 
    18316 > hide #!25 models
    18317 
    18318 > hide #!13 models
    18319 
    18320 > hide #!2 models
    18321 
    18322 > select add #36
    18323 
    18324 2 models selected 
    18325 
    18326 > surface dust #36 size 25.5
    18327 
    18328 > ui mousemode right "translate selected models"
    18329 
    18330 > view matrix models #36,1,0,0,78.717,0,1,0,120.2,0,0,1,104.78
    18331 
    18332 > ui mousemode right "rotate selected models"
    18333 
    18334 > view matrix models
    18335 > #36,0.99206,-0.088449,0.089364,77.564,0.10249,0.98057,-0.16725,137.1,-0.072835,0.17508,0.98186,92.496
    18336 
    18337 > ui mousemode right "translate selected models"
    18338 
    18339 > view matrix models
    18340 > #36,0.99206,-0.088449,0.089364,88.426,0.10249,0.98057,-0.16725,138.93,-0.072835,0.17508,0.98186,86.082
    18341 
    18342 > fitmap #36 inMap #37
    18343 
    18344 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 37871
    18345 points 
    18346 correlation = 0.6733, correlation about mean = 0.3886, overlap = 19.59 
    18347 steps = 164, shift = 29.2, angle = 12.3 degrees 
    18348  
    18349 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    18350 (#37) coordinates: 
    18351 Matrix rotation and translation 
    18352 -0.53620047 -0.84400779 -0.01182950 402.28303931 
    18353 0.84368442 -0.53632452 0.02350819 56.14293471 
    18354 -0.02618555 0.00262474 0.99965367 -108.56145376 
    18355 Axis -0.01237257 0.00850536 0.99988728 
    18356 Axis point 184.78476986 138.64550447 0.00000000 
    18357 Rotation angle (degrees) 122.44132659 
    18358 Shift along axis -113.04897788 
    18359  
    18360 
    18361 > view matrix models
    18362 > #36,0.99999,0.0017302,-0.0051465,67.07,-0.0017409,1,-0.0020851,109.41,0.0051429,0.002094,0.99998,136.71
    18363 
    18364 > ui mousemode right "rotate selected models"
    18365 
    18366 > view matrix models
    18367 > #36,-0.8447,-0.37364,0.38325,480.73,0.36684,-0.92554,-0.093788,409.39,0.38976,0.06137,0.91887,54.092
    18368 
    18369 > ui mousemode right "translate selected models"
    18370 
    18371 > view matrix models
    18372 > #36,-0.8447,-0.37364,0.38325,508.21,0.36684,-0.92554,-0.093788,447.32,0.38976,0.06137,0.91887,30.206
    18373 
    18374 > ui mousemode right "rotate selected models"
    18375 
    18376 > view matrix models
    18377 > #36,-0.45066,-0.86467,0.22193,545.55,0.8912,-0.45017,0.055771,202.26,0.05168,0.22291,0.97347,65.992
    18378 
    18379 > ui mousemode right "translate selected models"
    18380 
    18381 > view matrix models
    18382 > #36,-0.45066,-0.86467,0.22193,544.44,0.8912,-0.45017,0.055771,192.46,0.05168,0.22291,0.97347,68.858
    18383 
    18384 > fitmap #36 inMap #37
    18385 
    18386 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 37871
    18387 points 
    18388 correlation = 0.1777, correlation about mean = 0.1219, overlap = 4.186 
    18389 steps = 104, shift = 12.3, angle = 5.94 degrees 
    18390  
    18391 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    18392 (#37) coordinates: 
    18393 Matrix rotation and translation 
    18394 -0.53503957 0.80553794 -0.25463958 122.34959261 
    18395 -0.84147634 -0.48131609 0.24546368 359.54287069 
    18396 0.07516818 0.34560597 0.93536426 -171.95841740 
    18397 Axis 0.05951309 -0.19599989 -0.97879632 
    18398 Axis point 162.00515606 164.59925472 0.00000000 
    18399 Rotation angle (degrees) 122.71738942 
    18400 Shift along axis 105.12330341 
    18401  
    18402 
    18403 > ui mousemode right "rotate selected models"
    18404 
    18405 > view matrix models
    18406 > #36,-0.36897,0.92922,0.020184,236.35,-0.92839,-0.36949,0.039514,611.37,0.044175,-0.0041593,0.99902,113.27
    18407 
    18408 > ui mousemode right "translate selected models"
    18409 
    18410 > view matrix models
    18411 > #36,-0.36897,0.92922,0.020184,215.46,-0.92839,-0.36949,0.039514,603.79,0.044175,-0.0041593,0.99902,122.93
    18412 
    18413 > view matrix models
    18414 > #36,-0.36897,0.92922,0.020184,217.55,-0.92839,-0.36949,0.039514,598.81,0.044175,-0.0041593,0.99902,122.86
    18415 
    18416 > ui mousemode right "rotate selected models"
    18417 
    18418 > view matrix models
    18419 > #36,0.99693,-0.046758,-0.062739,103.84,0.040616,0.99457,-0.095847,144.96,0.06688,0.093005,0.99342,100.39
    18420 
    18421 > ui mousemode right "translate selected models"
    18422 
    18423 > view matrix models
    18424 > #36,0.99693,-0.046758,-0.062739,123.22,0.040616,0.99457,-0.095847,130.67,0.06688,0.093005,0.99342,94.744
    18425 
    18426 > fitmap #36 inMap #37
    18427 
    18428 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 37871
    18429 points 
    18430 correlation = 0.6733, correlation about mean = 0.3887, overlap = 19.59 
    18431 steps = 128, shift = 21.3, angle = 6.84 degrees 
    18432  
    18433 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    18434 (#37) coordinates: 
    18435 Matrix rotation and translation 
    18436 -0.53615526 -0.84403605 -0.01186247 402.30101724 
    18437 0.84371528 -0.53628046 0.02340589 56.15500330 
    18438 -0.02611703 0.00254065 0.99965568 -108.55629858 
    18439 Axis -0.01236136 0.00844494 0.99988793 
    18440 Axis point 184.79198002 138.66052905 0.00000000 
    18441 Rotation angle (degrees) 122.43822779 
    18442 Shift along axis -113.04289552 
    18443  
    18444 
    18445 > volume #36 level 0.004527
    18446 
    18447 > select add #37
    18448 
    18449 4 models selected 
    18450 
    18451 > select subtract #37
    18452 
    18453 2 models selected 
    18454 
    18455 > select subtract #36
    18456 
    18457 Nothing selected 
    18458 
    18459 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    18460 > dataset/Chimera sessions/20240125_linkage_1_fitting.cxs"
    18461 
    18462 ——— End of log from Thu Jan 25 16:06:42 2024 ———
    18463 
    18464 opened ChimeraX session 
    18465 
    18466 > show #!1 models
    18467 
    18468 > hide #!36 models
    18469 
    18470 > show #!13 models
    18471 
    18472 > show #!2 models
    18473 
    18474 > hide #!2 models
    18475 
    18476 > show #!24 models
    18477 
    18478 > show #!25 models
    18479 
    18480 > hide #!25 models
    18481 
    18482 > show #!25 models
    18483 
    18484 > hide #!13 models
    18485 
    18486 > hide #!37 models
    18487 
    18488 > show #!37 models
    18489 
    18490 > show #!36 models
    18491 
    18492 > hide #!37 models
    18493 
    18494 > ui tool show "Fit in Map"
    18495 
    18496 > fitmap #36 inMap #1
    18497 
    18498 Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 11978
    18499 points 
    18500 correlation = 1, correlation about mean = 0.9999, overlap = 1.04 
    18501 steps = 40, shift = 0.345, angle = 0.266 degrees 
    18502  
    18503 Position of postprocess_20231221.mrc (#36) relative to
    18504 postprocess_20231221.mrc (#1) coordinates: 
    18505 Matrix rotation and translation 
    18506 1.00000000 0.00006676 -0.00002236 -0.02989814 
    18507 -0.00006676 1.00000000 0.00003143 -0.01486284 
    18508 0.00002236 -0.00003143 1.00000000 -0.00253272 
    18509 Axis -0.40760935 -0.29001750 -0.86587786 
    18510 Axis point -141.44494503 333.70790751 0.00000000 
    18511 Rotation angle (degrees) 0.00441776 
    18512 Shift along axis 0.01869027 
    18513  
    18514 
    18515 > fitmap #36 inMap #1
    18516 
    18517 Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 11978
    18518 points 
    18519 correlation = 1, correlation about mean = 0.9998, overlap = 1.036 
    18520 steps = 44, shift = 0.0521, angle = 0.0234 degrees 
    18521  
    18522 Position of postprocess_20231221.mrc (#36) relative to
    18523 postprocess_20231221.mrc (#1) coordinates: 
    18524 Matrix rotation and translation 
    18525 0.99999994 -0.00034062 -0.00000287 0.06768847 
    18526 0.00034062 0.99999994 0.00002814 -0.06173873 
    18527 0.00000286 -0.00002814 1.00000000 -0.02901541 
    18528 Axis -0.08234288 -0.00837393 0.99656888 
    18529 Axis point 182.12386166 190.47985210 0.00000000 
    18530 Rotation angle (degrees) 0.01958306 
    18531 Shift along axis -0.03397252 
    18532  
    18533 
    18534 > fitmap #36 inMap #1
    18535 
    18536 Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 11978
    18537 points 
    18538 correlation = 1, correlation about mean = 0.9999, overlap = 1.04 
    18539 steps = 40, shift = 0.0226, angle = 0.0177 degrees 
    18540  
    18541 Position of postprocess_20231221.mrc (#36) relative to
    18542 postprocess_20231221.mrc (#1) coordinates: 
    18543 Matrix rotation and translation 
    18544 1.00000000 -0.00003169 0.00000147 -0.00541357 
    18545 0.00003168 1.00000000 0.00002178 -0.01376358 
    18546 -0.00000147 -0.00002177 1.00000000 -0.02023148 
    18547 Axis -0.56595470 0.03824516 0.82354877 
    18548 Axis point 417.33412239 -423.15145428 0.00000000 
    18549 Rotation angle (degrees) 0.00220436 
    18550 Shift along axis -0.01412416 
    18551  
    18552 
    18553 > fitmap #36 inMap #1
    18554 
    18555 Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 11978
    18556 points 
    18557 correlation = 1, correlation about mean = 0.9998, overlap = 1.039 
    18558 steps = 48, shift = 0.0416, angle = 0.0236 degrees 
    18559  
    18560 Position of postprocess_20231221.mrc (#36) relative to
    18561 postprocess_20231221.mrc (#1) coordinates: 
    18562 Matrix rotation and translation 
    18563 0.99999993 -0.00036831 -0.00002113 0.06219646 
    18564 0.00036830 0.99999991 -0.00021329 -0.04146817 
    18565 0.00002121 0.00021328 0.99999998 -0.03387551 
    18566 Axis 0.50051804 -0.04968009 0.86429947 
    18567 Axis point 112.10560848 163.53476479 0.00000000 
    18568 Rotation angle (degrees) 0.02441542 
    18569 Shift along axis 0.00391201 
    18570  
    18571 
    18572 > fitmap #36 inMap #1
    18573 
    18574 Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 11978
    18575 points 
    18576 correlation = 1, correlation about mean = 0.9999, overlap = 1.042 
    18577 steps = 40, shift = 0.00802, angle = 0.0146 degrees 
    18578  
    18579 Position of postprocess_20231221.mrc (#36) relative to
    18580 postprocess_20231221.mrc (#1) coordinates: 
    18581 Matrix rotation and translation 
    18582 0.99999999 -0.00017423 -0.00000387 0.02077895 
    18583 0.00017423 0.99999998 -0.00004973 -0.03336166 
    18584 0.00000388 0.00004973 1.00000000 -0.00286359 
    18585 Axis 0.27440533 -0.02135869 0.96137689 
    18586 Axis point 191.03788481 113.47555473 0.00000000 
    18587 Rotation angle (degrees) 0.01038395 
    18588 Shift along axis 0.00366143 
    18589  
    18590 
    18591 > fitmap #36 inMap #2
    18592 
    18593 Fit map postprocess_20231221.mrc in map emdb 3720 using 11978 points 
    18594 correlation = 0.7662, correlation about mean = 0.1758, overlap = 15.28 
    18595 steps = 60, shift = 0.348, angle = 0.345 degrees 
    18596  
    18597 Position of postprocess_20231221.mrc (#36) relative to emdb 3720 (#2)
    18598 coordinates: 
    18599 Matrix rotation and translation 
    18600 -0.53809684 -0.84280212 -0.01167777 402.49453385 
    18601 0.84254598 -0.53822181 0.02082191 57.41588058 
    18602 -0.02383398 0.00136515 0.99971499 -108.92729882 
    18603 Axis -0.01154359 0.00721221 0.99990736 
    18604 Axis point 184.66596532 139.00563744 0.00000000 
    18605 Rotation angle (degrees) 122.56811178 
    18606 Shift along axis -113.14934247 
    18607  
    18608 
    18609 > fitmap #36 inMap #37
    18610 
    18611 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 11978
    18612 points 
    18613 correlation = 0.7662, correlation about mean = 0.1756, overlap = 15.28 
    18614 steps = 44, shift = 0.0582, angle = 0.0299 degrees 
    18615  
    18616 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    18617 (#37) coordinates: 
    18618 Matrix rotation and translation 
    18619 -0.53805710 -0.84282596 -0.01178946 402.51126030 
    18620 0.84257100 -0.53818481 0.02076641 57.40218213 
    18621 -0.02384738 0.00124006 0.99971485 -108.90099824 
    18622 Axis -0.01158453 0.00715369 0.99990731 
    18623 Axis point 184.67696824 139.00477342 0.00000000 
    18624 Rotation angle (degrees) 122.56550718 
    18625 Shift along axis -113.14317184 
    18626  
    18627 
    18628 > fitmap #36 inMap #37
    18629 
    18630 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 11978
    18631 points 
    18632 correlation = 0.7662, correlation about mean = 0.1757, overlap = 15.28 
    18633 steps = 48, shift = 0.0254, angle = 0.00757 degrees 
    18634  
    18635 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    18636 (#37) coordinates: 
    18637 Matrix rotation and translation 
    18638 -0.53809630 -0.84280248 -0.01167827 402.48879877 
    18639 0.84254637 -0.53822128 0.02082053 57.42757559 
    18640 -0.02383309 0.00136397 0.99971503 -108.92394461 
    18641 Axis -0.01154346 0.00721138 0.99990737 
    18642 Axis point 184.65994008 139.00995823 0.00000000 
    18643 Rotation angle (degrees) 122.56807333 
    18644 Shift along axis -113.14583660 
    18645  
    18646 
    18647 > hide #!1 models
    18648 
    18649 > show #!1 models
    18650 
    18651 > hide #!1 models
    18652 
    18653 > show #!1 models
    18654 
    18655 > hide #!1 models
    18656 
    18657 > show #!1 models
    18658 
    18659 > hide #!24 models
    18660 
    18661 > show #!24 models
    18662 
    18663 > hide #!25 models
    18664 
    18665 > show #!25 models
    18666 
    18667 > show #!37 models
    18668 
    18669 > hide #!37 models
    18670 
    18671 > color #36 #d6d6d6db models
    18672 
    18673 > color #36 silver models
    18674 
    18675 > combine #3 modelId #38
    18676 
    18677 > combine #4 modelId #39
    18678 
    18679 > combine #5 modelId #40
    18680 
    18681 > combine #6 modelId #41
    18682 
    18683 > combine #7 modelId #42
    18684 
    18685 > combine #8 modelId #43
    18686 
    18687 > combine #9 modelId #44
    18688 
    18689 > combine #10 modelId #45
    18690 
    18691 > combine #11 modelId #46
    18692 
    18693 > combine #12 modelId #47
    18694 
    18695 > hide #47 models
    18696 
    18697 > hide #46 models
    18698 
    18699 > hide #45 models
    18700 
    18701 > hide #!44 models
    18702 
    18703 > hide #43 models
    18704 
    18705 > hide #42 models
    18706 
    18707 > hide #41 models
    18708 
    18709 > hide #40 models
    18710 
    18711 > hide #39 models
    18712 
    18713 > hide #38 models
    18714 
    18715 > hide #!36 models
    18716 
    18717 > show #!37 models
    18718 
    18719 > show #!13 models
    18720 
    18721 > hide #!1 models
    18722 
    18723 > hide #!24 models
    18724 
    18725 > show #!24 models
    18726 
    18727 > hide #!25 models
    18728 
    18729 > show #!25 models
    18730 
    18731 > hide #!25 models
    18732 
    18733 > show #!25 models
    18734 
    18735 > hide #!24 models
    18736 
    18737 > show #!24 models
    18738 
    18739 > hide #!37 models
    18740 
    18741 > show #!37 models
    18742 
    18743 > show #!2 models
    18744 
    18745 > hide #!24 models
    18746 
    18747 > select add #37
    18748 
    18749 2 models selected 
    18750 
    18751 > ui mousemode right "translate selected models"
    18752 
    18753 > view matrix models
    18754 > #37,-0.53759,0.84262,-0.031325,296.92,-0.84305,-0.53784,0.00058592,648.61,-0.016354,0.026724,0.99951,144.38
    18755 
    18756 > ui mousemode right "rotate selected models"
    18757 
    18758 > view matrix models
    18759 > #37,0.435,0.82685,-0.35651,227.09,-0.64332,0.56242,0.51944,433.29,0.63001,0.0033908,0.77658,100.31
    18760 
    18761 > ui mousemode right "translate selected models"
    18762 
    18763 > view matrix models
    18764 > #37,0.435,0.82685,-0.35651,217.55,-0.64332,0.56242,0.51944,437.01,0.63001,0.0033908,0.77658,111.85
    18765 
    18766 > fitmap #37 inMap #13
    18767 
    18768 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage1_postprocess.mrc
    18769 using 93502 points 
    18770 correlation = 0.8275, correlation about mean = 0.0683, overlap = 5387 
    18771 steps = 128, shift = 23.6, angle = 20.8 degrees 
    18772  
    18773 Position of emd_3720_2017_leaf.map (#37) relative to
    18774 COPI_golph_linkage1_postprocess.mrc (#13) coordinates: 
    18775 Matrix rotation and translation 
    18776 0.96497243 -0.24385286 -0.09676759 112.72644718 
    18777 0.25704999 0.95258237 0.16282538 125.52334262 
    18778 0.05247366 -0.18199611 0.98189811 157.44320497 
    18779 Axis -0.55069080 -0.23834299 0.79995766 
    18780 Axis point -409.53411756 597.77424891 0.00000000 
    18781 Rotation angle (degrees) 18.24499542 
    18782 Shift along axis 33.95287092 
    18783  
    18784 
    18785 > view matrix models
    18786 > #37,0.70986,0.64624,-0.28014,208.19,-0.43561,0.71535,0.54638,382.22,0.55349,-0.26582,0.7893,122.24
    18787 
    18788 > fitmap #37 inMap #13
    18789 
    18790 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage1_postprocess.mrc
    18791 using 93502 points 
    18792 correlation = 0.8275, correlation about mean = 0.06833, overlap = 5387 
    18793 steps = 76, shift = 16.5, angle = 0.0111 degrees 
    18794  
    18795 Position of emd_3720_2017_leaf.map (#37) relative to
    18796 COPI_golph_linkage1_postprocess.mrc (#13) coordinates: 
    18797 Matrix rotation and translation 
    18798 0.96495984 -0.24383080 -0.09694854 112.75477523 
    18799 0.25706459 0.95256799 0.16288640 125.51623738 
    18800 0.05263335 -0.18210087 0.98187014 157.44621713 
    18801 Axis -0.55080901 -0.23882345 0.79973295 
    18802 Axis point -409.41627607 597.69294757 0.00000000 
    18803 Rotation angle (degrees) 18.25002154 
    18804 Shift along axis 33.83236095 
    18805  
    18806 
    18807 > ui mousemode right "rotate selected models"
    18808 
    18809 > view matrix models
    18810 > #37,0.96793,-0.08683,-0.23573,250.2,0.19595,0.84814,0.4922,295.12,0.15719,-0.5226,0.83796,202.52
    18811 
    18812 > view matrix models
    18813 > #37,0.99441,-0.10557,-0.003281,222,0.090994,0.84049,0.53414,302.97,-0.053633,-0.53145,0.84539,226.57
    18814 
    18815 > view matrix models
    18816 > #37,0.98573,-0.13479,0.10084,214.18,0.029337,0.72743,0.68556,305.58,-0.16577,-0.67281,0.721,270.84
    18817 
    18818 > ui mousemode right "translate selected models"
    18819 
    18820 > view matrix models
    18821 > #37,0.98573,-0.13479,0.10084,211.97,0.029337,0.72743,0.68556,326.99,-0.16577,-0.67281,0.721,284.38
    18822 
    18823 > fitmap #37 inMap #13
    18824 
    18825 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage1_postprocess.mrc
    18826 using 93502 points 
    18827 correlation = 0.7947, correlation about mean = 0.07398, overlap = 5015 
    18828 steps = 132, shift = 15.2, angle = 19.6 degrees 
    18829  
    18830 Position of emd_3720_2017_leaf.map (#37) relative to
    18831 COPI_golph_linkage1_postprocess.mrc (#13) coordinates: 
    18832 Matrix rotation and translation 
    18833 0.52297669 -0.84563649 0.10674393 207.17830589 
    18834 0.50369708 0.40764960 0.76165020 111.36478075 
    18835 -0.68759334 -0.34455870 0.63913588 309.65795163 
    18836 Axis -0.57701428 0.41433761 0.70383156 
    18837 Axis point 181.50515184 241.23904203 0.00000000 
    18838 Rotation angle (degrees) 73.44825912 
    18839 Shift along axis 144.54481693 
    18840  
    18841 
    18842 > ui mousemode right "rotate selected models"
    18843 
    18844 > view matrix models
    18845 > #37,-0.12571,-0.84024,0.52745,383.52,0.73732,0.27658,0.61633,305.73,-0.66375,0.46637,0.58475,212.99
    18846 
    18847 > view matrix models
    18848 > #37,-0.11699,-0.92563,-0.35989,497.48,0.72116,-0.32833,0.61003,380.58,-0.68282,-0.18817,0.70594,279.06
    18849 
    18850 > view matrix models
    18851 > #37,-0.44799,-0.85868,-0.24894,513.86,0.50602,-0.47308,0.72121,409.11,-0.73706,0.19713,0.64644,246.18
    18852 
    18853 > view matrix models
    18854 > #37,0.94059,0.12144,-0.31709,247.6,0.19754,0.56382,0.80192,310.61,0.27617,-0.81692,0.50634,269.18
    18855 
    18856 > ui mousemode right "translate selected models"
    18857 
    18858 > view matrix models
    18859 > #37,0.94059,0.12144,-0.31709,273.94,0.19754,0.56382,0.80192,303.28,0.27617,-0.81692,0.50634,278.37
    18860 
    18861 > fitmap #37 inMap #13
    18862 
    18863 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage1_postprocess.mrc
    18864 using 93502 points 
    18865 correlation = 0.9169, correlation about mean = 0.1628, overlap = 7251 
    18866 steps = 84, shift = 13.2, angle = 16.2 degrees 
    18867  
    18868 Position of emd_3720_2017_leaf.map (#37) relative to
    18869 COPI_golph_linkage1_postprocess.mrc (#13) coordinates: 
    18870 Matrix rotation and translation 
    18871 0.71800307 -0.65223642 -0.24302103 221.33708653 
    18872 0.67862437 0.57836847 0.45272381 126.52773866 
    18873 -0.15472725 -0.48997708 0.85789388 248.75308436 
    18874 Axis -0.57717534 -0.05405849 0.81482901 
    18875 Axis point 44.46532013 380.39002860 0.00000000 
    18876 Rotation angle (degrees) 54.75087482 
    18877 Shift along axis 68.10102134 
    18878  
    18879 
    18880 > fitmap #37 inMap #13
    18881 
    18882 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage1_postprocess.mrc
    18883 using 93502 points 
    18884 correlation = 0.917, correlation about mean = 0.163, overlap = 7251 
    18885 steps = 36, shift = 0.0525, angle = 0.0264 degrees 
    18886  
    18887 Position of emd_3720_2017_leaf.map (#37) relative to
    18888 COPI_golph_linkage1_postprocess.mrc (#13) coordinates: 
    18889 Matrix rotation and translation 
    18890 0.71811713 -0.65224239 -0.24266771 221.27774252 
    18891 0.67841410 0.57838734 0.45301475 126.48867681 
    18892 -0.15511949 -0.48994685 0.85784031 248.75619417 
    18893 Axis -0.57735479 -0.05360386 0.81473190 
    18894 Axis point 44.52800019 380.32378630 0.00000000 
    18895 Rotation angle (degrees) 54.74809097 
    18896 Shift along axis 68.13356175 
    18897  
    18898 
    18899 > select subtract #37
    18900 
    18901 Nothing selected 
    18902 
    18903 > hide #!25 models
    18904 
    18905 > hide #!2 models
    18906 
    18907 > hide #!13 models
    18908 
    18909 > show #!36 models
    18910 
    18911 > select add #36
    18912 
    18913 2 models selected 
    18914 
    18915 > volume #36 level 0.003803
    18916 
    18917 > select add #38
    18918 
    18919 9810 atoms, 10032 bonds, 1233 residues, 3 models selected 
    18920 
    18921 > select add #39
    18922 
    18923 17311 atoms, 17651 bonds, 2186 residues, 4 models selected 
    18924 
    18925 > select add #40
    18926 
    18927 18768 atoms, 19134 bonds, 2367 residues, 5 models selected 
    18928 
    18929 > select add #41
    18930 
    18931 20225 atoms, 20617 bonds, 2548 residues, 6 models selected 
    18932 
    18933 > select add #42
    18934 
    18935 27439 atoms, 27990 bonds, 3453 residues, 7 models selected 
    18936 
    18937 > select add #43
    18938 
    18939 28901 atoms, 29471 bonds, 3632 residues, 8 models selected 
    18940 
    18941 > select add #44
    18942 
    18943 35574 atoms, 36257 bonds, 1 pseudobond, 4485 residues, 10 models selected 
    18944 
    18945 > select add #45
    18946 
    18947 36994 atoms, 37698 bonds, 1 pseudobond, 4662 residues, 11 models selected 
    18948 
    18949 > select add #46
    18950 
    18951 39361 atoms, 40096 bonds, 1 pseudobond, 4960 residues, 12 models selected 
    18952 
    18953 > select add #47
    18954 
    18955 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 13 models selected 
    18956 
    18957 > view matrix models
    18958 > #36,0.99997,-0.00047655,-0.0074944,145.76,0.00047082,1,-0.00076704,281.05,0.0074948,0.0007635,0.99997,74.503,#38,0.90148,0.40137,0.16197,305.92,-0.20826,0.7303,-0.65061,525.57,-0.37942,0.55278,0.74194,315.68,#39,-0.016838,-0.71721,0.69665,315.58,-0.071971,0.69581,0.71461,486.46,-0.99726,-0.038106,-0.063335,313.09,#40,0.15679,0.025292,0.98731,270.57,-0.68697,-0.71543,0.12742,481.49,0.70957,-0.69823,-0.094795,254.84,#41,-0.84494,-0.49319,0.20698,386.8,-0.47648,0.51826,-0.7102,476.86,0.24299,-0.6987,-0.67289,297.2,#42,-0.16138,-0.17465,-0.97132,332.27,-0.013588,-0.98373,0.17914,458.33,-0.9868,0.042107,0.15638,315.08,#43,0.23963,0.93175,0.27278,50.506,-0.88592,0.094928,0.45402,386.33,0.39714,-0.35046,0.84821,548.51,#44,0.48985,-0.51006,-0.70703,367.21,0.54942,-0.44906,0.70462,563.22,-0.6769,-0.73361,0.060264,335.37,#45,0.16446,-0.94009,-0.29863,374.26,-0.38651,0.21712,-0.89636,522.41,0.9075,0.26284,-0.32765,294.82,#46,0.6604,-0.235,0.7132,341.85,-0.68915,-0.5669,0.45133,514.18,0.29825,-0.78956,-0.53633,267.91,#47,-0.81927,0.2953,-0.49153,373.32,0.42635,0.88692,-0.17778,522.98,0.38344,-0.35521,-0.85252,293.9
    18959 
    18960 > ui mousemode right "rotate selected models"
    18961 
    18962 > view matrix models
    18963 > #36,-0.17575,-0.9818,-0.071927,606.61,0.82199,-0.18656,0.53808,231.14,-0.5417,0.035445,0.83982,218.11,#38,0.075028,-0.82807,0.55559,320.7,0.56985,0.49282,0.65757,447.75,-0.81831,0.26727,0.50885,340.35,#39,0.1474,-0.55502,-0.81867,357.6,-0.54294,-0.73726,0.40208,461.54,-0.82674,0.38522,-0.41001,331.55,#40,0.59459,0.74967,-0.29061,374.66,0.6425,-0.22571,0.73229,393.95,0.48338,-0.62213,-0.61587,307.37,#41,0.59748,-0.37096,0.71091,355.76,-0.47007,-0.88029,-0.064277,512.95,0.64965,-0.29577,-0.70034,278.91,#42,0.11456,0.99326,-0.017724,382.16,-0.66637,0.063599,-0.7429,481.52,-0.73677,0.096914,0.66917,323.1,#43,0.79857,-0.23009,-0.5562,484.81,0.57741,0.55381,0.59992,391.47,0.16999,-0.80022,0.5751,670.11,#44,-0.57495,0.58431,-0.57273,271.57,-0.070094,-0.73259,-0.67705,501.57,-0.81518,-0.34912,0.46216,324.53,#45,0.2836,-0.068354,0.9565,313.41,0.70041,-0.66652,-0.2553,492.89,0.65498,0.74235,-0.14115,285.37,#46,0.53916,0.65608,-0.52807,329.14,0.83108,-0.51604,0.20739,453.27,-0.13644,-0.55069,-0.82349,280.35,#47,-0.30382,-0.89612,0.32352,313.08,-0.54111,-0.11719,-0.83275,491.52,0.78416,-0.42806,-0.44929,285.13
    18964 
    18965 > ui mousemode right "translate selected models"
    18966 
    18967 > view matrix models
    18968 > #36,-0.17575,-0.9818,-0.071927,618.94,0.82199,-0.18656,0.53808,234.64,-0.5417,0.035445,0.83982,205.55,#38,0.075028,-0.82807,0.55559,333.02,0.56985,0.49282,0.65757,451.25,-0.81831,0.26727,0.50885,327.79,#39,0.1474,-0.55502,-0.81867,369.93,-0.54294,-0.73726,0.40208,465.04,-0.82674,0.38522,-0.41001,318.98,#40,0.59459,0.74967,-0.29061,386.98,0.6425,-0.22571,0.73229,397.45,0.48338,-0.62213,-0.61587,294.8,#41,0.59748,-0.37096,0.71091,368.09,-0.47007,-0.88029,-0.064277,516.45,0.64965,-0.29577,-0.70034,266.35,#42,0.11456,0.99326,-0.017724,394.49,-0.66637,0.063599,-0.7429,485.02,-0.73677,0.096914,0.66917,310.53,#43,0.79857,-0.23009,-0.5562,497.14,0.57741,0.55381,0.59992,394.97,0.16999,-0.80022,0.5751,657.54,#44,-0.57495,0.58431,-0.57273,283.9,-0.070094,-0.73259,-0.67705,505.07,-0.81518,-0.34912,0.46216,311.96,#45,0.2836,-0.068354,0.9565,325.73,0.70041,-0.66652,-0.2553,496.39,0.65498,0.74235,-0.14115,272.8,#46,0.53916,0.65608,-0.52807,341.46,0.83108,-0.51604,0.20739,456.77,-0.13644,-0.55069,-0.82349,267.78,#47,-0.30382,-0.89612,0.32352,325.4,-0.54111,-0.11719,-0.83275,495.02,0.78416,-0.42806,-0.44929,272.57
    18969 
    18970 > ui mousemode right "rotate selected models"
    18971 
    18972 > view matrix models
    18973 > #36,-0.14175,-0.98979,-0.014596,600.72,0.68361,-0.10855,0.72173,207.01,-0.71595,0.092328,0.69202,263.27,#38,0.085117,-0.78862,0.60896,332.11,0.35833,0.59452,0.71983,464.31,-0.92971,0.15694,0.33319,335.75,#39,0.089987,-0.58688,-0.80466,369.5,-0.72835,-0.58982,0.34873,473.23,-0.67927,0.55469,-0.48053,323.43,#40,0.64622,0.71605,-0.26395,381.73,0.69674,-0.41246,0.58688,400.91,0.31137,-0.56315,-0.76545,315.44,#41,0.58693,-0.43191,0.68481,369.21,-0.34465,-0.89865,-0.27139,511.04,0.73262,-0.076734,-0.6763,260.28,#42,0.052429,0.99771,-0.042766,394.96,-0.82513,0.019158,-0.56462,489.05,-0.56251,0.06489,0.82424,310.19,#43,0.83658,-0.21974,-0.50184,502.17,0.54752,0.36693,0.75206,475.43,0.018878,-0.90392,0.42728,667.1,#44,-0.60188,0.52855,-0.59864,285.87,-0.21946,-0.83024,-0.51238,516.09,-0.76784,-0.17701,0.61571,308.52,#45,0.34448,-0.086523,0.9348,325.94,0.81311,-0.4702,-0.34315,495.84,0.46924,0.87831,-0.09162,271.86,#46,0.58403,0.60728,-0.53863,339.09,0.73962,-0.67153,0.044843,455.2,-0.33447,-0.42457,-0.84135,276,#47,-0.31266,-0.91377,0.25936,325.52,-0.32337,-0.15434,-0.9336,494.48,0.89313,-0.37577,-0.24723,271.96
    18974 
    18975 > ui mousemode right "translate selected models"
    18976 
    18977 > view matrix models
    18978 > #36,-0.14175,-0.98979,-0.014596,604.48,0.68361,-0.10855,0.72173,211.99,-0.71595,0.092328,0.69202,255.66,#38,0.085117,-0.78862,0.60896,335.87,0.35833,0.59452,0.71983,469.29,-0.92971,0.15694,0.33319,328.13,#39,0.089987,-0.58688,-0.80466,373.27,-0.72835,-0.58982,0.34873,478.21,-0.67927,0.55469,-0.48053,315.81,#40,0.64622,0.71605,-0.26395,385.5,0.69674,-0.41246,0.58688,405.9,0.31137,-0.56315,-0.76545,307.82,#41,0.58693,-0.43191,0.68481,372.98,-0.34465,-0.89865,-0.27139,516.02,0.73262,-0.076734,-0.6763,252.66,#42,0.052429,0.99771,-0.042766,398.73,-0.82513,0.019158,-0.56462,494.04,-0.56251,0.06489,0.82424,302.58,#43,0.83658,-0.21974,-0.50184,505.94,0.54752,0.36693,0.75206,480.41,0.018878,-0.90392,0.42728,659.48,#44,-0.60188,0.52855,-0.59864,289.64,-0.21946,-0.83024,-0.51238,521.07,-0.76784,-0.17701,0.61571,300.9,#45,0.34448,-0.086523,0.9348,329.7,0.81311,-0.4702,-0.34315,500.82,0.46924,0.87831,-0.09162,264.24,#46,0.58403,0.60728,-0.53863,342.86,0.73962,-0.67153,0.044843,460.18,-0.33447,-0.42457,-0.84135,268.38,#47,-0.31266,-0.91377,0.25936,329.28,-0.32337,-0.15434,-0.9336,499.46,0.89313,-0.37577,-0.24723,264.34
    18979 
    18980 > ui mousemode right "rotate selected models"
    18981 
    18982 > view matrix models
    18983 > #36,-0.02392,-0.9965,-0.08006,595.67,0.66786,-0.075519,0.74044,204.41,-0.7439,-0.035757,0.66733,293.1,#38,0.21766,-0.78165,0.5845,328.82,0.33005,0.62253,0.7096,471.72,-0.91853,0.038461,0.39348,323.79,#39,0.15288,-0.67387,-0.72286,367.78,-0.74903,-0.55616,0.36006,479.15,-0.64466,0.4864,-0.58977,316.28,#40,0.62348,0.76886,-0.14184,378.48,0.68479,-0.44948,0.57361,406.3,0.37727,-0.45477,-0.80675,311.63,#41,0.47441,-0.44856,0.75745,377.01,-0.34241,-0.88671,-0.31065,515.21,0.81098,-0.11198,-0.57425,252.79,#42,0.097155,0.98082,-0.16898,395.27,-0.84139,-0.0097478,-0.54034,493.82,-0.53163,0.19467,0.8243,306.14,#43,0.84514,-0.08749,-0.52734,454.54,0.52186,0.34871,0.7785,486.65,0.11578,-0.93314,0.34037,674.24,#44,-0.50383,0.51854,-0.69085,288.31,-0.22173,-0.85061,-0.47675,524.14,-0.83486,-0.087024,0.54354,289.55,#45,0.30788,-0.21617,0.92654,332.1,0.81464,-0.44319,-0.37409,501.67,0.4915,0.86998,0.03965,258.94,#46,0.64746,0.63421,-0.42258,343.22,0.71192,-0.70121,0.038406,460.78,-0.27196,-0.32571,-0.90551,265.7,#47,-0.43718,-0.86175,0.25743,331.63,-0.28912,-0.13638,-0.94753,500.33,0.85164,-0.48867,-0.18953,259.01
    18984 
    18985 > ui mousemode right "translate selected models"
    18986 
    18987 > view matrix models
    18988 > #36,-0.02392,-0.9965,-0.08006,596.43,0.66786,-0.075519,0.74044,204.57,-0.7439,-0.035757,0.66733,291.78,#38,0.21766,-0.78165,0.5845,329.59,0.33005,0.62253,0.7096,471.88,-0.91853,0.038461,0.39348,322.47,#39,0.15288,-0.67387,-0.72286,368.55,-0.74903,-0.55616,0.36006,479.31,-0.64466,0.4864,-0.58977,314.96,#40,0.62348,0.76886,-0.14184,379.24,0.68479,-0.44948,0.57361,406.46,0.37727,-0.45477,-0.80675,310.31,#41,0.47441,-0.44856,0.75745,377.77,-0.34241,-0.88671,-0.31065,515.37,0.81098,-0.11198,-0.57425,251.47,#42,0.097155,0.98082,-0.16898,396.04,-0.84139,-0.0097478,-0.54034,493.98,-0.53163,0.19467,0.8243,304.82,#43,0.84514,-0.08749,-0.52734,455.31,0.52186,0.34871,0.7785,486.81,0.11578,-0.93314,0.34037,672.92,#44,-0.50383,0.51854,-0.69085,289.08,-0.22173,-0.85061,-0.47675,524.3,-0.83486,-0.087024,0.54354,288.23,#45,0.30788,-0.21617,0.92654,332.87,0.81464,-0.44319,-0.37409,501.83,0.4915,0.86998,0.03965,257.62,#46,0.64746,0.63421,-0.42258,343.98,0.71192,-0.70121,0.038406,460.94,-0.27196,-0.32571,-0.90551,264.38,#47,-0.43718,-0.86175,0.25743,332.39,-0.28912,-0.13638,-0.94753,500.49,0.85164,-0.48867,-0.18953,257.69
    18989 
    18990 > view matrix models
    18991 > #36,-0.02392,-0.9965,-0.08006,597.33,0.66786,-0.075519,0.74044,204.9,-0.7439,-0.035757,0.66733,290.48,#38,0.21766,-0.78165,0.5845,330.49,0.33005,0.62253,0.7096,472.21,-0.91853,0.038461,0.39348,321.18,#39,0.15288,-0.67387,-0.72286,369.45,-0.74903,-0.55616,0.36006,479.65,-0.64466,0.4864,-0.58977,313.66,#40,0.62348,0.76886,-0.14184,380.14,0.68479,-0.44948,0.57361,406.8,0.37727,-0.45477,-0.80675,309.01,#41,0.47441,-0.44856,0.75745,378.68,-0.34241,-0.88671,-0.31065,515.7,0.81098,-0.11198,-0.57425,250.17,#42,0.097155,0.98082,-0.16898,396.94,-0.84139,-0.0097478,-0.54034,494.31,-0.53163,0.19467,0.8243,303.52,#43,0.84514,-0.08749,-0.52734,456.21,0.52186,0.34871,0.7785,487.14,0.11578,-0.93314,0.34037,671.62,#44,-0.50383,0.51854,-0.69085,289.98,-0.22173,-0.85061,-0.47675,524.63,-0.83486,-0.087024,0.54354,286.93,#45,0.30788,-0.21617,0.92654,333.77,0.81464,-0.44319,-0.37409,502.17,0.4915,0.86998,0.03965,256.32,#46,0.64746,0.63421,-0.42258,344.88,0.71192,-0.70121,0.038406,461.27,-0.27196,-0.32571,-0.90551,263.08,#47,-0.43718,-0.86175,0.25743,333.29,-0.28912,-0.13638,-0.94753,500.82,0.85164,-0.48867,-0.18953,256.39
    18992 
    18993 > ui mousemode right "rotate selected models"
    18994 
    18995 > view matrix models
    18996 > #36,-0.14104,-0.98937,-0.035348,610.52,0.86225,-0.14031,0.48665,233.65,-0.48644,0.03816,0.87288,175.83,#38,0.093677,-0.79942,0.59342,337.15,0.61622,0.51471,0.59611,455.77,-0.78199,0.30984,0.54083,315.62,#39,0.11063,-0.5864,-0.80243,374.59,-0.49601,-0.73223,0.46671,468.27,-0.86124,0.34638,-0.37186,307.16,#40,0.63133,0.73025,-0.26107,387.99,0.5808,-0.22215,0.78315,401.61,0.51389,-0.64606,-0.56438,278.53,#41,0.58095,-0.41761,0.69864,374.69,-0.53888,-0.84063,-0.054384,522.94,0.61001,-0.34489,-0.7134,257.88,#42,0.072755,0.99625,-0.046771,400.01,-0.62315,0.0087923,-0.78205,487.53,-0.77871,0.086044,0.62145,299.61,#43,0.82816,-0.21163,-0.519,502.1,0.52582,0.61396,0.5887,370.77,0.19406,-0.76044,0.61974,638.74,#44,-0.58717,0.54313,-0.6002,290.58,0.0098331,-0.73664,-0.67622,512.82,-0.8094,-0.40296,0.42719,303.93,#45,0.32562,-0.092693,0.94095,331.47,0.64283,-0.70809,-0.29221,504.61,0.69336,0.70001,-0.17098,263.69,#46,0.57811,0.62321,-0.52669,345.15,0.81075,-0.51151,0.28467,464.67,-0.091999,-0.59158,-0.80098,255.97,#47,-0.32114,-0.90576,0.27654,331.07,-0.57423,-0.045966,-0.8174,503.27,0.75308,-0.4213,-0.50536,263.37
    18997 
    18998 > ui mousemode right "translate selected models"
    18999 
    19000 > view matrix models
    19001 > #36,-0.14104,-0.98937,-0.035348,600.23,0.86225,-0.14031,0.48665,227.6,-0.48644,0.03816,0.87288,176.83,#38,0.093677,-0.79942,0.59342,326.87,0.61622,0.51471,0.59611,449.73,-0.78199,0.30984,0.54083,316.62,#39,0.11063,-0.5864,-0.80243,364.31,-0.49601,-0.73223,0.46671,462.23,-0.86124,0.34638,-0.37186,308.16,#40,0.63133,0.73025,-0.26107,377.7,0.5808,-0.22215,0.78315,395.56,0.51389,-0.64606,-0.56438,279.53,#41,0.58095,-0.41761,0.69864,364.4,-0.53888,-0.84063,-0.054384,516.9,0.61001,-0.34489,-0.7134,258.88,#42,0.072755,0.99625,-0.046771,389.73,-0.62315,0.0087923,-0.78205,481.48,-0.77871,0.086044,0.62145,300.61,#43,0.82816,-0.21163,-0.519,491.82,0.52582,0.61396,0.5887,364.73,0.19406,-0.76044,0.61974,639.74,#44,-0.58717,0.54313,-0.6002,280.29,0.0098331,-0.73664,-0.67622,506.78,-0.8094,-0.40296,0.42719,304.93,#45,0.32562,-0.092693,0.94095,321.19,0.64283,-0.70809,-0.29221,498.56,0.69336,0.70001,-0.17098,264.69,#46,0.57811,0.62321,-0.52669,334.87,0.81075,-0.51151,0.28467,458.62,-0.091999,-0.59158,-0.80098,256.97,#47,-0.32114,-0.90576,0.27654,320.78,-0.57423,-0.045966,-0.8174,497.23,0.75308,-0.4213,-0.50536,264.37
    19002 
    19003 > view matrix models
    19004 > #36,-0.14104,-0.98937,-0.035348,603.93,0.86225,-0.14031,0.48665,224.26,-0.48644,0.03816,0.87288,175.26,#38,0.093677,-0.79942,0.59342,330.57,0.61622,0.51471,0.59611,446.38,-0.78199,0.30984,0.54083,315.05,#39,0.11063,-0.5864,-0.80243,368.01,-0.49601,-0.73223,0.46671,458.88,-0.86124,0.34638,-0.37186,306.58,#40,0.63133,0.73025,-0.26107,381.4,0.5808,-0.22215,0.78315,392.21,0.51389,-0.64606,-0.56438,277.96,#41,0.58095,-0.41761,0.69864,368.1,-0.53888,-0.84063,-0.054384,513.55,0.61001,-0.34489,-0.7134,257.31,#42,0.072755,0.99625,-0.046771,393.43,-0.62315,0.0087923,-0.78205,478.13,-0.77871,0.086044,0.62145,299.04,#43,0.82816,-0.21163,-0.519,495.52,0.52582,0.61396,0.5887,361.38,0.19406,-0.76044,0.61974,638.17,#44,-0.58717,0.54313,-0.6002,283.99,0.0098331,-0.73664,-0.67622,503.43,-0.8094,-0.40296,0.42719,303.36,#45,0.32562,-0.092693,0.94095,324.89,0.64283,-0.70809,-0.29221,495.21,0.69336,0.70001,-0.17098,263.12,#46,0.57811,0.62321,-0.52669,338.57,0.81075,-0.51151,0.28467,455.28,-0.091999,-0.59158,-0.80098,255.39,#47,-0.32114,-0.90576,0.27654,324.48,-0.57423,-0.045966,-0.8174,493.88,0.75308,-0.4213,-0.50536,262.8
    19005 
    19006 > view matrix models
    19007 > #36,-0.14104,-0.98937,-0.035348,601.71,0.86225,-0.14031,0.48665,225.16,-0.48644,0.03816,0.87288,175.33,#38,0.093677,-0.79942,0.59342,328.34,0.61622,0.51471,0.59611,447.28,-0.78199,0.30984,0.54083,315.12,#39,0.11063,-0.5864,-0.80243,365.78,-0.49601,-0.73223,0.46671,459.78,-0.86124,0.34638,-0.37186,306.65,#40,0.63133,0.73025,-0.26107,379.18,0.5808,-0.22215,0.78315,393.12,0.51389,-0.64606,-0.56438,278.03,#41,0.58095,-0.41761,0.69864,365.88,-0.53888,-0.84063,-0.054384,514.45,0.61001,-0.34489,-0.7134,257.38,#42,0.072755,0.99625,-0.046771,391.2,-0.62315,0.0087923,-0.78205,479.04,-0.77871,0.086044,0.62145,299.11,#43,0.82816,-0.21163,-0.519,493.29,0.52582,0.61396,0.5887,362.28,0.19406,-0.76044,0.61974,638.24,#44,-0.58717,0.54313,-0.6002,281.77,0.0098331,-0.73664,-0.67622,504.33,-0.8094,-0.40296,0.42719,303.42,#45,0.32562,-0.092693,0.94095,322.66,0.64283,-0.70809,-0.29221,496.12,0.69336,0.70001,-0.17098,263.18,#46,0.57811,0.62321,-0.52669,336.34,0.81075,-0.51151,0.28467,456.18,-0.091999,-0.59158,-0.80098,255.46,#47,-0.32114,-0.90576,0.27654,322.26,-0.57423,-0.045966,-0.8174,494.78,0.75308,-0.4213,-0.50536,262.87
    19008 
    19009 > ui mousemode right "rotate selected models"
    19010 
    19011 > view matrix models
    19012 > #36,-0.22059,-0.97493,0.029062,601.16,0.71752,-0.14202,0.6819,212.54,-0.66068,0.17128,0.73086,216.23,#38,-0.0056811,-0.78578,0.61847,333.87,0.41116,0.56195,0.71775,457.6,-0.91154,0.25837,0.31989,326.29,#39,0.047296,-0.52144,-0.85198,369.81,-0.68704,-0.63612,0.35119,468.26,-0.72508,0.56873,-0.38833,311.32,#40,0.65421,0.67339,-0.34431,383.02,0.69698,-0.36003,0.62016,396.88,0.29364,-0.64569,-0.70488,298.17,#41,0.65725,-0.41529,0.62894,363.06,-0.36725,-0.90519,-0.21392,509.46,0.65814,-0.090383,-0.74745,250.7,#42,0.022496,0.9988,0.043523,393.62,-0.79113,0.044401,-0.61004,485.52,-0.61124,-0.020709,0.79117,296.85,#43,0.82161,-0.30721,-0.48018,532.13,0.56961,0.40952,0.71263,455.42,-0.022283,-0.85902,0.51145,641.78,#44,-0.6617,0.53069,-0.52965,284.19,-0.19427,-0.80364,-0.56252,509.44,-0.72417,-0.26932,0.63486,306.17,#45,0.36483,0.002442,0.93107,321.34,0.79573,-0.52004,-0.31044,492.4,0.48344,0.85414,-0.19167,265.09,#46,0.5344,0.58349,-0.61152,335.79,0.77345,-0.62936,0.075398,451.99,-0.34087,-0.51327,-0.78763,265.74,#47,-0.22497,-0.93933,0.25892,320.97,-0.38084,-0.15982,-0.91073,491.02,0.89686,-0.30349,-0.32178,265.14
    19013 
    19014 > view matrix models
    19015 > #36,-0.39651,-0.91731,-0.036286,640.79,0.51918,-0.25666,0.81522,247.92,-0.75712,0.30441,0.57802,243.23,#38,-0.15056,-0.85098,0.50316,343.42,0.20545,0.47092,0.85792,464.75,-0.96702,0.23254,0.10393,333.57,#39,0.11254,-0.353,-0.92883,375.59,-0.80679,-0.57812,0.12195,477.64,-0.58002,0.73565,-0.34986,312.86,#40,0.53987,0.67427,-0.50389,400.29,0.8381,-0.3749,0.39628,408.13,0.078296,-0.63625,-0.7675,312.29,#41,0.76186,-0.25237,0.59655,356.84,-0.11214,-0.95846,-0.26225,503.65,0.63795,0.1329,-0.75852,246.61,#42,0.11577,0.96998,0.21384,394.72,-0.8874,0.19772,-0.41644,495.07,-0.44622,-0.14155,0.88366,292.75,#43,0.70209,-0.44187,-0.55841,562.96,0.67591,0.16676,0.71787,560.14,-0.22408,-0.88144,0.41575,619.13,#44,-0.67091,0.64319,-0.36904,283.84,-0.44415,-0.74706,-0.4946,502.65,-0.59381,-0.16792,0.78688,309.6,#45,0.25326,0.16238,0.95367,320.11,0.92689,-0.323,-0.19115,483.55,0.277,0.93236,-0.23231,268.63,#46,0.35897,0.64467,-0.67493,341.56,0.76027,-0.62144,-0.18921,447,-0.54141,-0.44521,-0.71321,275.4,#47,-0.082224,-0.91641,0.39171,319.99,-0.21602,-0.36731,-0.90466,482.18,0.97292,-0.159,-0.16776,268.99
    19016 
    19017 > ui mousemode right "translate selected models"
    19018 
    19019 > view matrix models
    19020 > #36,-0.39651,-0.91731,-0.036286,637.92,0.51918,-0.25666,0.81522,250.92,-0.75712,0.30441,0.57802,239.89,#38,-0.15056,-0.85098,0.50316,340.55,0.20545,0.47092,0.85792,467.75,-0.96702,0.23254,0.10393,330.23,#39,0.11254,-0.353,-0.92883,372.71,-0.80679,-0.57812,0.12195,480.64,-0.58002,0.73565,-0.34986,309.52,#40,0.53987,0.67427,-0.50389,397.41,0.8381,-0.3749,0.39628,411.12,0.078296,-0.63625,-0.7675,308.95,#41,0.76186,-0.25237,0.59655,353.97,-0.11214,-0.95846,-0.26225,506.65,0.63795,0.1329,-0.75852,243.27,#42,0.11577,0.96998,0.21384,391.84,-0.8874,0.19772,-0.41644,498.06,-0.44622,-0.14155,0.88366,289.42,#43,0.70209,-0.44187,-0.55841,560.08,0.67591,0.16676,0.71787,563.13,-0.22408,-0.88144,0.41575,615.79,#44,-0.67091,0.64319,-0.36904,280.96,-0.44415,-0.74706,-0.4946,505.65,-0.59381,-0.16792,0.78688,306.26,#45,0.25326,0.16238,0.95367,317.24,0.92689,-0.323,-0.19115,486.55,0.277,0.93236,-0.23231,265.29,#46,0.35897,0.64467,-0.67493,338.68,0.76027,-0.62144,-0.18921,450,-0.54141,-0.44521,-0.71321,272.06,#47,-0.082224,-0.91641,0.39171,317.12,-0.21602,-0.36731,-0.90466,485.17,0.97292,-0.159,-0.16776,265.65
    19021 
    19022 > select subtract #36
    19023 
    19024 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 11 models selected 
    19025 
    19026 > select subtract #38
    19027 
    19028 31014 atoms, 31550 bonds, 1 pseudobond, 3912 residues, 10 models selected 
    19029 
    19030 > select subtract #39
    19031 
    19032 23513 atoms, 23931 bonds, 1 pseudobond, 2959 residues, 9 models selected 
    19033 
    19034 > select subtract #40
    19035 
    19036 22056 atoms, 22448 bonds, 1 pseudobond, 2778 residues, 8 models selected 
    19037 
    19038 > select subtract #41
    19039 
    19040 20599 atoms, 20965 bonds, 1 pseudobond, 2597 residues, 7 models selected 
    19041 
    19042 > select subtract #42
    19043 
    19044 13385 atoms, 13592 bonds, 1 pseudobond, 1692 residues, 6 models selected 
    19045 
    19046 > select subtract #43
    19047 
    19048 11923 atoms, 12111 bonds, 1 pseudobond, 1513 residues, 5 models selected 
    19049 
    19050 > select subtract #44
    19051 
    19052 5250 atoms, 5325 bonds, 660 residues, 3 models selected 
    19053 
    19054 > select subtract #45
    19055 
    19056 3830 atoms, 3884 bonds, 483 residues, 2 models selected 
    19057 
    19058 > select subtract #46
    19059 
    19060 1463 atoms, 1486 bonds, 185 residues, 1 model selected 
    19061 
    19062 > select subtract #47
    19063 
    19064 Nothing selected 
    19065 
    19066 > fitmap #36 inMap #37
    19067 
    19068 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 17524
    19069 points 
    19070 correlation = 0.7396, correlation about mean = 0.2452, overlap = 17.26 
    19071 steps = 92, shift = 10.2, angle = 6.87 degrees 
    19072  
    19073 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    19074 (#37) coordinates: 
    19075 Matrix rotation and translation 
    19076 -0.53718104 -0.84338522 -0.01174480 402.36650062 
    19077 0.84309296 -0.53730541 0.02229769 56.76182007 
    19078 -0.02511609 0.00207594 0.99968240 -108.75374613 
    19079 Axis -0.01198928 0.00792771 0.99989670 
    19080 Axis point 184.71559779 138.80845988 0.00000000 
    19081 Rotation angle (degrees) 122.50695744 
    19082 Shift along axis -113.11660621 
    19083  
    19084 
    19085 > hide #!37 models
    19086 
    19087 > volume #36 level 0.003492
    19088 
    19089 > volume #36 color #c0c0c0bd
    19090 
    19091 > volume #36 color #c0c0c0b4
    19092 
    19093 > volume #36 color #c0c0c0b3
    19094 
    19095 > show #38 models
    19096 
    19097 > volume #36 level 0.003026
    19098 
    19099 > select add #38
    19100 
    19101 9810 atoms, 10032 bonds, 1233 residues, 1 model selected 
    19102 
    19103 > view matrix models
    19104 > #38,-0.15056,-0.85098,0.50316,328.48,0.20545,0.47092,0.85792,483.33,-0.96702,0.23254,0.10393,331.97
    19105 
    19106 > fitmap #38 inMap #36
    19107 
    19108 Fit molecule copy of CopA_F8WHL2.pdb (#38) to map postprocess_20231221.mrc
    19109 (#36) using 9810 atoms 
    19110 average map value = 0.001845, steps = 112 
    19111 shifted from previous position = 14.5 
    19112 rotated from previous position = 6.9 degrees 
    19113 atoms outside contour = 7363, contour level = 0.0030265 
    19114  
    19115 Position of copy of CopA_F8WHL2.pdb (#38) relative to postprocess_20231221.mrc
    19116 (#36) coordinates: 
    19117 Matrix rotation and translation 
    19118 0.89978186 0.40470537 0.16311391 162.21661696 
    19119 -0.20990723 0.72919571 -0.65131601 244.62524809 
    19120 -0.38253306 0.55180355 0.74106767 239.08673404 
    19121 Axis 0.82572655 0.37448913 -0.42182171 
    19122 Axis point 0.00000000 -322.99650071 438.18015944 
    19123 Rotation angle (degrees) 46.76261319 
    19124 Shift along axis 124.70408997 
    19125  
    19126 
    19127 > select subtract #38
    19128 
    19129 Nothing selected 
    19130 
    19131 > hide #38 models
    19132 
    19133 > show #39 models
    19134 
    19135 > fitmap #39 inMap #36
    19136 
    19137 Fit molecule copy of CopB_Q9JIF7.pdb (#39) to map postprocess_20231221.mrc
    19138 (#36) using 7501 atoms 
    19139 average map value = 0.002525, steps = 312 
    19140 shifted from previous position = 7.47 
    19141 rotated from previous position = 20.9 degrees 
    19142 atoms outside contour = 5350, contour level = 0.0030265 
    19143  
    19144 Position of copy of CopB_Q9JIF7.pdb (#39) relative to postprocess_20231221.mrc
    19145 (#36) coordinates: 
    19146 Matrix rotation and translation 
    19147 0.06460156 -0.55302768 0.83065457 167.09256288 
    19148 -0.18845106 0.81065501 0.55436870 200.49543367 
    19149 -0.97995553 -0.19235083 -0.05184908 229.32041111 
    19150 Axis -0.37482373 0.90885480 0.18300307 
    19151 Axis point 225.47316101 0.00000000 -20.15378941 
    19152 Rotation angle (degrees) 95.06559927 
    19153 Shift along axis 161.55732002 
    19154  
    19155 
    19156 > hide #39 models
    19157 
    19158 > show #40 models
    19159 
    19160 > fitmap #39 inMap #36
    19161 
    19162 Fit molecule copy of CopB_Q9JIF7.pdb (#39) to map postprocess_20231221.mrc
    19163 (#36) using 7501 atoms 
    19164 average map value = 0.002526, steps = 40 
    19165 shifted from previous position = 0.0746 
    19166 rotated from previous position = 0.208 degrees 
    19167 atoms outside contour = 5341, contour level = 0.0030265 
    19168  
    19169 Position of copy of CopB_Q9JIF7.pdb (#39) relative to postprocess_20231221.mrc
    19170 (#36) coordinates: 
    19171 Matrix rotation and translation 
    19172 0.06528128 -0.55023071 0.83245692 167.12871758 
    19173 -0.18990182 0.81213990 0.55169383 200.50577283 
    19174 -0.97963037 -0.19410036 -0.05147229 229.37928036 
    19175 Axis -0.37431722 0.90949419 0.18085058 
    19176 Axis point 225.69640896 0.00000000 -19.86539156 
    19177 Rotation angle (degrees) 94.99251240 
    19178 Shift along axis 161.28305324 
    19179  
    19180 
    19181 > fitmap #39 inMap #36
    19182 
    19183 Fit molecule copy of CopB_Q9JIF7.pdb (#39) to map postprocess_20231221.mrc
    19184 (#36) using 7501 atoms 
    19185 average map value = 0.002525, steps = 40 
    19186 shifted from previous position = 0.00858 
    19187 rotated from previous position = 0.053 degrees 
    19188 atoms outside contour = 5342, contour level = 0.0030265 
    19189  
    19190 Position of copy of CopB_Q9JIF7.pdb (#39) relative to postprocess_20231221.mrc
    19191 (#36) coordinates: 
    19192 Matrix rotation and translation 
    19193 0.06525033 -0.55081120 0.83207537 167.12641327 
    19194 -0.18926120 0.81188569 0.55228781 200.50384422 
    19195 -0.97975639 -0.19351655 -0.05127138 229.37027211 
    19196 Axis -0.37432371 0.90936930 0.18146413 
    19197 Axis point 225.64616418 0.00000000 -19.97146360 
    19198 Rotation angle (degrees) 94.99493526 
    19199 Shift along axis 161.39513805 
    19200  
    19201 
    19202 > fitmap #40 inMap #36
    19203 
    19204 Fit molecule copy of hArf1_P84078 (#40) to map postprocess_20231221.mrc (#36)
    19205 using 1457 atoms 
    19206 average map value = 0.002587, steps = 80 
    19207 shifted from previous position = 10 
    19208 rotated from previous position = 6.85 degrees 
    19209 atoms outside contour = 1110, contour level = 0.0030265 
    19210  
    19211 Position of copy of hArf1_P84078 (#40) relative to postprocess_20231221.mrc
    19212 (#36) coordinates: 
    19213 Matrix rotation and translation 
    19214 0.15742199 0.02369701 0.98724706 126.73234874 
    19215 -0.68705342 -0.71547020 0.12672797 200.58268382 
    19216 0.70934893 -0.69824124 -0.09634963 178.39488616 
    19217 Axis -0.73407699 0.24728028 -0.63244243 
    19218 Axis point 0.00000000 138.30427469 -15.50378424 
    19219 Rotation angle (degrees) 145.81206601 
    19220 Shift along axis -156.25565426 
    19221  
    19222 
    19223 > hide #40 models
    19224 
    19225 > show #41 models
    19226 
    19227 > fitmap #41 inMap #36
    19228 
    19229 Fit molecule copy of hArf1_P84078 (#41) to map postprocess_20231221.mrc (#36)
    19230 using 1457 atoms 
    19231 average map value = 0.003766, steps = 88 
    19232 shifted from previous position = 10.7 
    19233 rotated from previous position = 6.8 degrees 
    19234 atoms outside contour = 532, contour level = 0.0030265 
    19235  
    19236 Position of copy of hArf1_P84078 (#41) relative to postprocess_20231221.mrc
    19237 (#36) coordinates: 
    19238 Matrix rotation and translation 
    19239 -0.84461824 -0.49418058 0.20592611 243.00926717 
    19240 -0.47655890 0.51872551 -0.70979958 195.94109169 
    19241 0.24395004 -0.69764560 -0.67363118 220.56590457 
    19242 Axis 0.27853378 -0.87139781 0.40383759 
    19243 Axis point 151.40382868 0.00000000 157.23174396 
    19244 Rotation angle (degrees) 178.74983418 
    19245 Shift along axis -13.98354622 
    19246  
    19247 
    19248 > hide #41 models
    19249 
    19250 > show #42 models
    19251 
    19252 > fitmap #42 inMap #36
    19253 
    19254 Fit molecule copy of CopBprime_O55029.pdb (#42) to map
    19255 postprocess_20231221.mrc (#36) using 7214 atoms 
    19256 average map value = 0.003119, steps = 68 
    19257 shifted from previous position = 9.07 
    19258 rotated from previous position = 6.89 degrees 
    19259 atoms outside contour = 3621, contour level = 0.0030265 
    19260  
    19261 Position of copy of CopBprime_O55029.pdb (#42) relative to
    19262 postprocess_20231221.mrc (#36) coordinates: 
    19263 Matrix rotation and translation 
    19264 -0.16246064 -0.17528673 -0.97102065 188.51851661 
    19265 -0.01449850 -0.98356401 0.17997676 177.39518336 
    19266 -0.98660850 0.04331748 0.15724905 238.53639541 
    19267 Axis -0.64585918 0.07366904 0.75989393 
    19268 Axis point 189.62403960 85.35112764 0.00000000 
    19269 Rotation angle (degrees) 173.92694201 
    19270 Shift along axis 72.57447712 
    19271  
    19272 
    19273 > hide #42 models
    19274 
    19275 > show #43 models
    19276 
    19277 > fitmap #43 inMap #36
    19278 
    19279 Fit molecule copy of CopD_Q5XJY5 (#43) to map postprocess_20231221.mrc (#36)
    19280 using 1462 atoms 
    19281 average map value = 0.003728, steps = 140 
    19282 shifted from previous position = 9.62 
    19283 rotated from previous position = 6.81 degrees 
    19284 atoms outside contour = 777, contour level = 0.0030265 
    19285  
    19286 Position of copy of CopD_Q5XJY5 (#43) relative to postprocess_20231221.mrc
    19287 (#36) coordinates: 
    19288 Matrix rotation and translation 
    19289 0.24062811 0.93088816 0.27485514 -92.64681410 
    19290 -0.88598994 0.09501323 0.45386598 105.35990271 
    19291 0.39638359 -0.35273180 0.84762040 472.60767797 
    19292 Axis -0.40500272 -0.06102094 -0.91227696 
    19293 Axis point -102.59394014 189.88709015 0.00000000 
    19294 Rotation angle (degrees) 84.74256338 
    19295 Shift along axis -400.05604309 
    19296  
    19297 
    19298 > hide #43 models
    19299 
    19300 > show #!44 models
    19301 
    19302 > fitmap #44 inMap #36
    19303 
    19304 Fit molecule copy of CopG_Q9QZE5 (#44) to map postprocess_20231221.mrc (#36)
    19305 using 6673 atoms 
    19306 average map value = 0.002534, steps = 92 
    19307 shifted from previous position = 9.06 
    19308 rotated from previous position = 9.53 degrees 
    19309 atoms outside contour = 4985, contour level = 0.0030265 
    19310  
    19311 Position of copy of CopG_Q9QZE5 (#44) relative to postprocess_20231221.mrc
    19312 (#36) coordinates: 
    19313 Matrix rotation and translation 
    19314 0.40005308 -0.55524456 -0.72915088 215.30512143 
    19315 0.52653340 -0.51194577 0.67872977 279.23758458 
    19316 -0.75014673 -0.65545023 0.08754932 253.06944842 
    19317 Axis -0.77669476 0.01222276 0.62975856 
    19318 Axis point 0.00000000 234.86750685 111.70141084 
    19319 Rotation angle (degrees) 120.80859332 
    19320 Shift along axis -4.44065446 
    19321  
    19322 
    19323 > select add #44
    19324 
    19325 6673 atoms, 6786 bonds, 1 pseudobond, 853 residues, 2 models selected 
    19326 
    19327 > view matrix models
    19328 > #44,-0.54249,0.72294,-0.42786,276.64,-0.52141,-0.68911,-0.50325,508.31,-0.65866,-0.049913,0.75078,290.34
    19329 
    19330 > view matrix models
    19331 > #44,-0.54249,0.72294,-0.42786,275.6,-0.52141,-0.68911,-0.50325,508.32,-0.65866,-0.049913,0.75078,293.31
    19332 
    19333 > view matrix models
    19334 > #44,-0.54249,0.72294,-0.42786,274.02,-0.52141,-0.68911,-0.50325,508.16,-0.65866,-0.049913,0.75078,290.2
    19335 
    19336 > fitmap #44 inMap #36
    19337 
    19338 Fit molecule copy of CopG_Q9QZE5 (#44) to map postprocess_20231221.mrc (#36)
    19339 using 6673 atoms 
    19340 average map value = 0.003524, steps = 76 
    19341 shifted from previous position = 4.31 
    19342 rotated from previous position = 6.7 degrees 
    19343 atoms outside contour = 4080, contour level = 0.0030265 
    19344  
    19345 Position of copy of CopG_Q9QZE5 (#44) relative to postprocess_20231221.mrc
    19346 (#36) coordinates: 
    19347 Matrix rotation and translation 
    19348 0.48873828 -0.51173168 -0.70658728 223.57146441 
    19349 0.54915305 -0.44888212 0.70493671 282.28090605 
    19350 -0.67791285 -0.73255411 0.06163313 258.74031676 
    19351 Axis -0.80450267 -0.01604786 0.59373220 
    19352 Axis point 0.00000000 245.04131525 103.90846134 
    19353 Rotation angle (degrees) 116.69591826 
    19354 Shift along axis -30.77138760 
    19355  
    19356 
    19357 > select subtract #44
    19358 
    19359 Nothing selected 
    19360 
    19361 > hide #!44 models
    19362 
    19363 > show #45 models
    19364 
    19365 > fitmap #45 inMap #36
    19366 
    19367 Fit molecule copy of CopZ1_P61924.pdb (#45) to map postprocess_20231221.mrc
    19368 (#36) using 1420 atoms 
    19369 average map value = 0.003139, steps = 104 
    19370 shifted from previous position = 8.48 
    19371 rotated from previous position = 29.9 degrees 
    19372 atoms outside contour = 854, contour level = 0.0030265 
    19373  
    19374 Position of copy of CopZ1_P61924.pdb (#45) relative to
    19375 postprocess_20231221.mrc (#36) coordinates: 
    19376 Matrix rotation and translation 
    19377 -0.19312389 -0.97513519 0.10869470 219.27432926 
    19378 -0.46343472 -0.00698820 -0.88610351 243.25864960 
    19379 0.86483029 -0.22150066 -0.45056191 224.06719709 
    19380 Axis 0.58851864 -0.66957264 0.45312062 
    19381 Axis point 171.87035679 0.00000000 235.79200882 
    19382 Rotation angle (degrees) 145.62267285 
    19383 Shift along axis 67.69716150 
    19384  
    19385 
    19386 > show #!44 models
    19387 
    19388 > hide #45 models
    19389 
    19390 > show #46 models
    19391 
    19392 > fitmap #46 inMap #36
    19393 
    19394 Fit molecule copy of Golph3_ Q9CRA5.pdb (#46) to map postprocess_20231221.mrc
    19395 (#36) using 2367 atoms 
    19396 average map value = 0.002823, steps = 76 
    19397 shifted from previous position = 5.55 
    19398 rotated from previous position = 14.9 degrees 
    19399 atoms outside contour = 1509, contour level = 0.0030265 
    19400  
    19401 Position of copy of Golph3_ Q9CRA5.pdb (#46) relative to
    19402 postprocess_20231221.mrc (#36) coordinates: 
    19403 Matrix rotation and translation 
    19404 0.79431459 -0.32721850 0.51185192 187.88383847 
    19405 -0.58325392 -0.64644449 0.49185809 240.20045784 
    19406 0.16993879 -0.68922969 -0.70433177 189.10441435 
    19407 Axis -0.94038898 0.27223323 -0.20385690 
    19408 Axis point 0.00000000 177.06737384 21.42638812 
    19409 Rotation angle (degrees) 141.09887643 
    19410 Shift along axis -149.84358522 
    19411  
    19412 
    19413 > show #45 models
    19414 
    19415 > show #42 models
    19416 
    19417 > show #39 models
    19418 
    19419 > select add #46
    19420 
    19421 2367 atoms, 2398 bonds, 298 residues, 1 model selected 
    19422 
    19423 > view matrix models
    19424 > #46,0.35897,0.64467,-0.67493,336.48,0.76027,-0.62144,-0.18921,453.81,-0.54141,-0.44521,-0.71321,260.42
    19425 
    19426 > fitmap #46 inMap #36
    19427 
    19428 Fit molecule copy of Golph3_ Q9CRA5.pdb (#46) to map postprocess_20231221.mrc
    19429 (#36) using 2367 atoms 
    19430 average map value = 0.0031, steps = 52 
    19431 shifted from previous position = 4.91 
    19432 rotated from previous position = 6.88 degrees 
    19433 atoms outside contour = 1162, contour level = 0.0030265 
    19434  
    19435 Position of copy of Golph3_ Q9CRA5.pdb (#46) relative to
    19436 postprocess_20231221.mrc (#36) coordinates: 
    19437 Matrix rotation and translation 
    19438 0.66037595 -0.23675098 0.71263775 198.05026413 
    19439 -0.68947043 -0.56718583 0.45047837 233.24072072 
    19440 0.29754684 -0.78882774 -0.53778868 191.34190837 
    19441 Axis -0.89599540 0.30010305 -0.32730779 
    19442 Axis point 0.00000000 180.18876170 -4.20452047 
    19443 Rotation angle (degrees) 136.24464100 
    19444 Shift along axis -170.08357163 
    19445  
    19446 
    19447 > view matrix models
    19448 > #46,0.41891,0.69152,-0.58848,335.36,0.77647,-0.6088,-0.16266,460.88,-0.47076,-0.3888,-0.79198,263.13
    19449 
    19450 > fitmap #46 inMap #36
    19451 
    19452 Fit molecule copy of Golph3_ Q9CRA5.pdb (#46) to map postprocess_20231221.mrc
    19453 (#36) using 2367 atoms 
    19454 average map value = 0.0031, steps = 56 
    19455 shifted from previous position = 2.95 
    19456 rotated from previous position = 0.00789 degrees 
    19457 atoms outside contour = 1162, contour level = 0.0030265 
    19458  
    19459 Position of copy of Golph3_ Q9CRA5.pdb (#46) relative to
    19460 postprocess_20231221.mrc (#36) coordinates: 
    19461 Matrix rotation and translation 
    19462 0.66037772 -0.23664993 0.71266968 198.05732277 
    19463 -0.68946744 -0.56712690 0.45055712 233.24780532 
    19464 0.29754984 -0.78890043 -0.53768040 191.34677433 
    19465 Axis -0.89599058 0.30008569 -0.32733693 
    19466 Axis point 0.00000000 180.19619821 -4.22028621 
    19467 Rotation angle (degrees) 136.23764146 
    19468 Shift along axis -170.09803316 
    19469  
    19470 
    19471 > select subtract #46
    19472 
    19473 Nothing selected 
    19474 
    19475 > show #47 models
    19476 
    19477 > fitmap #47 inMap #36
    19478 
    19479 Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc
    19480 (#36) using 1463 atoms 
    19481 average map value = 0.003008, steps = 216 
    19482 shifted from previous position = 3.73 
    19483 rotated from previous position = 28.5 degrees 
    19484 atoms outside contour = 927, contour level = 0.0030265 
    19485  
    19486 Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to
    19487 postprocess_20231221.mrc (#36) coordinates: 
    19488 Matrix rotation and translation 
    19489 -0.75920760 0.13719007 -0.63622538 218.32062358 
    19490 0.53125651 0.69534164 -0.48401089 247.76162545 
    19491 0.37599251 -0.70546362 -0.60079177 221.17327703 
    19492 Axis -0.19976535 -0.91308905 0.35547460 
    19493 Axis point 34.16127640 0.00000000 188.65130694 
    19494 Rotation angle (degrees) 146.33871613 
    19495 Shift along axis -191.21983958 
    19496  
    19497 
    19498 > hide #46 models
    19499 
    19500 > hide #42 models
    19501 
    19502 > hide #39 models
    19503 
    19504 > hide #!44 models
    19505 
    19506 > hide #!36 models
    19507 
    19508 > hide #45 models
    19509 
    19510 > show #45 models
    19511 
    19512 > hide #45 models
    19513 
    19514 > show #45 models
    19515 
    19516 > hide #47 models
    19517 
    19518 > show #47 models
    19519 
    19520 > show #!36 models
    19521 
    19522 > select add #45
    19523 
    19524 1420 atoms, 1441 bonds, 177 residues, 1 model selected 
    19525 
    19526 > view matrix models
    19527 > #45,0.4074,0.32856,0.8521,316.64,0.70835,-0.70261,-0.067753,494.43,0.57643,0.63118,-0.51898,268.19
    19528 
    19529 > ui mousemode right "rotate selected models"
    19530 
    19531 > view matrix models
    19532 > #45,0.79491,0.36438,0.48513,316.27,0.60345,-0.3917,-0.69457,491.62,-0.063061,0.84487,-0.53124,266.32
    19533 
    19534 > hide #!36 models
    19535 
    19536 > view matrix models
    19537 > #45,-0.68784,-0.39482,0.60909,305.75,0.71782,-0.24549,0.65151,501.79,-0.1077,0.88535,0.45227,272.76
    19538 
    19539 > view matrix models
    19540 > #45,0.50044,0.61601,-0.60835,309.18,-0.77781,0.6285,-0.003429,495.47,0.38023,0.47489,0.79366,274.94
    19541 
    19542 > view matrix models
    19543 > #45,0.9407,0.30741,-0.14344,312.53,-0.27614,0.93953,0.20257,500.95,0.19704,-0.15095,0.96871,271.64
    19544 
    19545 > view matrix models
    19546 > #45,0.72804,0.66597,-0.1626,313.45,-0.59249,0.73058,0.33941,499.16,0.34484,-0.15076,0.92648,272.07
    19547 
    19548 > ui mousemode right "translate selected models"
    19549 
    19550 > view matrix models
    19551 > #45,0.72804,0.66597,-0.1626,316.84,-0.59249,0.73058,0.33941,491.65,0.34484,-0.15076,0.92648,265.94
    19552 
    19553 > view matrix models
    19554 > #45,0.72804,0.66597,-0.1626,277.83,-0.59249,0.73058,0.33941,464.15,0.34484,-0.15076,0.92648,270.44
    19555 
    19556 > ui mousemode right "rotate selected models"
    19557 
    19558 > view matrix models
    19559 > #45,0.75372,0.077138,-0.65266,271.38,-0.087009,0.99606,0.017242,465.95,0.65141,0.043791,0.75746,271.89
    19560 
    19561 > view matrix models
    19562 > #45,0.21111,0.22417,-0.95141,267.72,-0.34854,0.92663,0.14099,465.13,0.91321,0.30184,0.27375,271.44
    19563 
    19564 > ui mousemode right "translate selected models"
    19565 
    19566 > view matrix models
    19567 > #45,0.21111,0.22417,-0.95141,317.53,-0.34854,0.92663,0.14099,489.65,0.91321,0.30184,0.27375,262.41
    19568 
    19569 > ui mousemode right "rotate selected models"
    19570 
    19571 > view matrix models
    19572 > #45,0.1589,0.17637,-0.97141,316.88,-0.30489,0.94459,0.12163,489.83,0.93904,0.27685,0.20387,261.93
    19573 
    19574 > view matrix models
    19575 > #45,0.14542,0.17996,-0.97287,316.83,-0.35891,0.92593,0.11763,489.45,0.92198,0.33206,0.19924,262.14
    19576 
    19577 > fitmap #45 inMap #36
    19578 
    19579 Fit molecule copy of CopZ1_P61924.pdb (#45) to map postprocess_20231221.mrc
    19580 (#36) using 1420 atoms 
    19581 average map value = 0.003112, steps = 264 
    19582 shifted from previous position = 10.9 
    19583 rotated from previous position = 21 degrees 
    19584 atoms outside contour = 847, contour level = 0.0030265 
    19585  
    19586 Position of copy of CopZ1_P61924.pdb (#45) relative to
    19587 postprocess_20231221.mrc (#36) coordinates: 
    19588 Matrix rotation and translation 
    19589 -0.97399447 0.16527494 -0.15498057 229.35705387 
    19590 -0.19245837 -0.24256250 0.95085394 236.35581998 
    19591 0.11955986 0.95595379 0.26806307 215.40502985 
    19592 Axis 0.01130869 -0.60878112 -0.79325763 
    19593 Axis point 119.54809377 18.75677209 0.00000000 
    19594 Rotation angle (degrees) 166.96867783 
    19595 Shift along axis -312.16691678 
    19596  
    19597 
    19598 > view matrix models
    19599 > #45,-0.016061,-0.046823,-0.99877,317.94,-0.4539,0.89039,-0.034443,493.68,0.89091,0.45279,-0.035553,250.87
    19600 
    19601 > view matrix models
    19602 > #45,0.53836,0.34142,-0.77046,324.27,-0.72404,0.6552,-0.21559,489.87,0.43119,0.67391,0.59993,254.12
    19603 
    19604 > ui mousemode right "translate selected models"
    19605 
    19606 > view matrix models
    19607 > #45,0.53836,0.34142,-0.77046,311.26,-0.72404,0.6552,-0.21559,488.89,0.43119,0.67391,0.59993,258.16
    19608 
    19609 > fitmap #45 inMap #36
    19610 
    19611 Fit molecule copy of CopZ1_P61924.pdb (#45) to map postprocess_20231221.mrc
    19612 (#36) using 1420 atoms 
    19613 average map value = 0.003331, steps = 176 
    19614 shifted from previous position = 6.2 
    19615 rotated from previous position = 30.9 degrees 
    19616 atoms outside contour = 809, contour level = 0.0030265 
    19617  
    19618 Position of copy of CopZ1_P61924.pdb (#45) relative to
    19619 postprocess_20231221.mrc (#36) coordinates: 
    19620 Matrix rotation and translation 
    19621 -0.95696738 0.07482187 -0.28038391 229.42312978 
    19622 -0.25013758 -0.70250991 0.66626648 241.55633226 
    19623 -0.14712117 0.70772984 0.69099483 216.75579486 
    19624 Axis 0.11724008 -0.37680819 -0.91884185 
    19625 Axis point 135.44318294 63.71073576 0.00000000 
    19626 Rotation angle (degrees) 169.81477120 
    19627 Shift along axis -263.28711378 
    19628  
    19629 
    19630 > view matrix models
    19631 > #45,0.54529,0.56789,-0.61658,313.54,-0.56934,0.79077,0.22481,490.72,0.61523,0.22846,0.75452,269.69
    19632 
    19633 > view matrix models
    19634 > #45,0.54529,0.56789,-0.61658,309.86,-0.56934,0.79077,0.22481,489.44,0.61523,0.22846,0.75452,268.59
    19635 
    19636 > fitmap #45 inMap #36
    19637 
    19638 Fit molecule copy of CopZ1_P61924.pdb (#45) to map postprocess_20231221.mrc
    19639 (#36) using 1420 atoms 
    19640 average map value = 0.003341, steps = 124 
    19641 shifted from previous position = 7.88 
    19642 rotated from previous position = 26.7 degrees 
    19643 atoms outside contour = 848, contour level = 0.0030265 
    19644  
    19645 Position of copy of CopZ1_P61924.pdb (#45) relative to
    19646 postprocess_20231221.mrc (#36) coordinates: 
    19647 Matrix rotation and translation 
    19648 -0.79262455 -0.25965120 -0.55165895 225.82439325 
    19649 -0.24029440 -0.69852575 0.67403292 252.43242993 
    19650 -0.56036143 0.66681560 0.49127593 221.81898659 
    19651 Axis -0.32196172 0.38821440 0.86349883 
    19652 Axis point 153.71958293 77.31257138 0.00000000 
    19653 Rotation angle (degrees) 179.35779522 
    19654 Shift along axis 216.83152997 
    19655  
    19656 
    19657 > show #!36 models
    19658 
    19659 > show #!44 models
    19660 
    19661 > select add #47
    19662 
    19663 2883 atoms, 2927 bonds, 362 residues, 2 models selected 
    19664 
    19665 > view matrix models
    19666 > #45,0.52874,0.67089,-0.51995,316.75,-0.8131,0.5761,-0.083515,491.76,0.24351,0.46693,0.85011,253.88,#47,-0.30922,-0.62631,0.71562,323.54,-0.25028,-0.67238,-0.69661,488.42,0.91746,-0.39451,0.051161,258.49
    19667 
    19668 > fitmap #45 inMap #36
    19669 
    19670 Fit molecule copy of CopZ1_P61924.pdb (#45) to map postprocess_20231221.mrc
    19671 (#36) using 1420 atoms 
    19672 average map value = 0.003331, steps = 92 
    19673 shifted from previous position = 0.699 
    19674 rotated from previous position = 26.7 degrees 
    19675 atoms outside contour = 809, contour level = 0.0030265 
    19676  
    19677 Position of copy of CopZ1_P61924.pdb (#45) relative to
    19678 postprocess_20231221.mrc (#36) coordinates: 
    19679 Matrix rotation and translation 
    19680 -0.95696052 0.07496574 -0.28036889 229.41857606 
    19681 -0.25020565 -0.70260268 0.66614309 241.55647631 
    19682 -0.14705002 0.70762252 0.69111987 216.76484984 
    19683 Axis 0.11721334 -0.37673492 -0.91887531 
    19684 Axis point 135.44275251 63.71231097 0.00000000 
    19685 Rotation angle (degrees) 169.80843248 
    19686 Shift along axis -263.29170978 
    19687  
    19688 
    19689 > fitmap #47 inMap #36
    19690 
    19691 Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc
    19692 (#36) using 1463 atoms 
    19693 average map value = 0.003943, steps = 116 
    19694 shifted from previous position = 11.6 
    19695 rotated from previous position = 25 degrees 
    19696 atoms outside contour = 662, contour level = 0.0030265 
    19697  
    19698 Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to
    19699 postprocess_20231221.mrc (#36) coordinates: 
    19700 Matrix rotation and translation 
    19701 -0.81884158 0.29473455 -0.49257492 229.57710348 
    19702 0.42640479 0.88680121 -0.17822064 242.04313745 
    19703 0.38428825 -0.35597078 -0.85182591 217.26590072 
    19704 Axis -0.19655349 -0.96962243 0.14559902 
    19705 Axis point 59.02633770 0.00000000 149.08741108 
    19706 Rotation angle (degrees) 153.11717756 
    19707 Shift along axis -248.18093319 
    19708  
    19709 
    19710 > hide #!44 models
    19711 
    19712 > hide #!36 models
    19713 
    19714 > hide #45 models
    19715 
    19716 > select subtract #45
    19717 
    19718 1463 atoms, 1486 bonds, 185 residues, 1 model selected 
    19719 
    19720 > hide #47 models
    19721 
    19722 > select subtract #47
    19723 
    19724 Nothing selected 
    19725 
    19726 > show #!13 models
    19727 
    19728 > color #13 #b2b2b288 models
    19729 
    19730 > color #13 #b2b2b287 models
    19731 
    19732 > hide #!13 models
    19733 
    19734 > show #!13 models
    19735 
    19736 > show #!1 models
    19737 
    19738 > show #!24 models
    19739 
    19740 > color #13 #d6d6d6ff models
    19741 
    19742 > color #13 darkgrey models
    19743 
    19744 > color #13 #a9a9a980 models
    19745 
    19746 > hide #!13 models
    19747 
    19748 > color #1 #c0c0c0e5 models
    19749 
    19750 > color #1 #c0c0c0e6 models
    19751 
    19752 > color #1 #d6d6d6ff models
    19753 
    19754 > color #1 #d6d6d6d8 models
    19755 
    19756 > hide #!1 models
    19757 
    19758 > color #1 #d6d6d6d9 models
    19759 
    19760 > color #24 #d6d6d6db models
    19761 
    19762 > color #24 #d6d6d6d8 models
    19763 
    19764 > hide #!24 models
    19765 
    19766 > color #24 #d6d6d6d9 models
    19767 
    19768 > show #!1 models
    19769 
    19770 > show #!13 models
    19771 
    19772 > show #!24 models
    19773 
    19774 > show #!36 models
    19775 
    19776 > color #36 #d6d6d6ff models
    19777 
    19778 > color #36 #d6d6d6f4 models
    19779 
    19780 > color #36 #d6d6d6d9 models
    19781 
    19782 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    19783 > dataset/Chimera sessions/20240125_linkage_1_fitting_final.cxs"
    19784 
    19785 > hide #!36 models
    19786 
    19787 > show #!36 models
    19788 
    19789 > hide #!36 models
    19790 
    19791 > hide #!24 models
    19792 
    19793 > hide #!13 models
    19794 
    19795 > show #!13 models
    19796 
    19797 > hide #!1 models
    19798 
    19799 > select add #3
    19800 
    19801 9810 atoms, 10032 bonds, 1233 residues, 1 model selected 
    19802 
    19803 > select subtract #3
    19804 
    19805 Nothing selected 
    19806 
    19807 > show #3 models
    19808 
    19809 > show #4 models
    19810 
    19811 > show #5 models
    19812 
    19813 > show #6 models
    19814 
    19815 > show #7 models
    19816 
    19817 > show #8 models
    19818 
    19819 > show #!9 models
    19820 
    19821 > show #10 models
    19822 
    19823 > show #11 models
    19824 
    19825 > show #12 models
    19826 
    19827 > show #26 models
    19828 
    19829 > show #27 models
    19830 
    19831 > show #28 models
    19832 
    19833 > show #29 models
    19834 
    19835 > show #30 models
    19836 
    19837 > show #31 models
    19838 
    19839 > show #!32 models
    19840 
    19841 > show #33 models
    19842 
    19843 > show #34 models
    19844 
    19845 > show #35 models
    19846 
    19847 > show #38 models
    19848 
    19849 > show #39 models
    19850 
    19851 > show #40 models
    19852 
    19853 > show #41 models
    19854 
    19855 > show #42 models
    19856 
    19857 > show #43 models
    19858 
    19859 > show #!44 models
    19860 
    19861 > show #45 models
    19862 
    19863 > show #46 models
    19864 
    19865 > show #47 models
    19866 
    19867 > hide #47 models
    19868 
    19869 > hide #46 models
    19870 
    19871 > hide #45 models
    19872 
    19873 > hide #!44 models
    19874 
    19875 > hide #43 models
    19876 
    19877 > hide #42 models
    19878 
    19879 > hide #41 models
    19880 
    19881 > hide #40 models
    19882 
    19883 > hide #39 models
    19884 
    19885 > hide #38 models
    19886 
    19887 > hide #35 models
    19888 
    19889 > hide #34 models
    19890 
    19891 > hide #33 models
    19892 
    19893 > hide #!32 models
    19894 
    19895 > hide #31 models
    19896 
    19897 > hide #30 models
    19898 
    19899 > hide #29 models
    19900 
    19901 > hide #28 models
    19902 
    19903 > hide #27 models
    19904 
    19905 > hide #26 models
    19906 
    19907 > hide #!13 models
    19908 
    19909 > hide #12 models
    19910 
    19911 > hide #11 models
    19912 
    19913 > hide #10 models
    19914 
    19915 > hide #!9 models
    19916 
    19917 > hide #8 models
    19918 
    19919 > hide #7 models
    19920 
    19921 > hide #6 models
    19922 
    19923 > hide #5 models
    19924 
    19925 > hide #4 models
    19926 
    19927 > hide #3 models
    19928 
    19929 > show #!16 models
    19930 
    19931 > show #!13 models
    19932 
    19933 > hide #!13 models
    19934 
    19935 > show #!1 models
    19936 
    19937 > hide #!1 models
    19938 
    19939 > show #!1 models
    19940 
    19941 > hide #!1 models
    19942 
    19943 > show #!1 models
    19944 
    19945 > show #!2 models
    19946 
    19947 > hide #!2 models
    19948 
    19949 > show #!2 models
    19950 
    19951 > hide #!2 models
    19952 
    19953 > show #!2 models
    19954 
    19955 > hide #!2 models
    19956 
    19957 > show #!2 models
    19958 
    19959 > hide #!1 models
    19960 
    19961 > show #!1 models
    19962 
    19963 > hide #!2 models
    19964 
    19965 > show #!2 models
    19966 
    19967 > hide #!2 models
    19968 
    19969 > hide #!1 models
    19970 
    19971 > show #!1 models
    19972 
    19973 > show #!2 models
    19974 
    19975 > hide #!2 models
    19976 
    19977 > hide #!1 models
    19978 
    19979 > show #!24 models
    19980 
    19981 > show #!25 models
    19982 
    19983 > hide #!25 models
    19984 
    19985 > hide #!24 models
    19986 
    19987 > show #!2 models
    19988 
    19989 > show #!1 models
    19990 
    19991 > hide #!16 models
    19992 
    19993 > show #!16 models
    19994 
    19995 > show #!25 models
    19996 
    19997 > select add #25
    19998 
    19999 2 models selected 
    20000 
    20001 > view matrix models
    20002 > #25,-0.25541,-0.56476,-0.78473,231.87,0.73989,-0.63665,0.21738,257.28,-0.62236,-0.52509,0.58046,220.85
    20003 
    20004 > ui mousemode right "rotate selected models"
    20005 
    20006 > view matrix models
    20007 > #25,0.48596,-0.11293,-0.86665,104.37,0.53215,0.82485,0.19091,109.7,0.6933,-0.55396,0.46094,90.472
    20008 
    20009 > view matrix models
    20010 > #25,0.82708,0.11158,-0.55089,0.31623,0.081587,0.94589,0.31407,131,0.55613,-0.30471,0.77322,37.878
    20011 
    20012 > view matrix models
    20013 > #25,0.82444,0.11315,-0.55453,0.87432,0.082749,0.94518,0.31588,130.73,0.55987,-0.30631,0.76988,38.057
    20014 
    20015 > ui mousemode right "translate selected models"
    20016 
    20017 > view matrix models
    20018 > #25,0.82444,0.11315,-0.55453,73.432,0.082749,0.94518,0.31588,93.879,0.55987,-0.30631,0.76988,133.03
    20019 
    20020 > view matrix models
    20021 > #25,0.82444,0.11315,-0.55453,67.782,0.082749,0.94518,0.31588,140.35,0.55987,-0.30631,0.76988,162.17
    20022 
    20023 > view matrix models
    20024 > #25,0.82444,0.11315,-0.55453,73.036,0.082749,0.94518,0.31588,179.65,0.55987,-0.30631,0.76988,150.63
    20025 
    20026 > view matrix models
    20027 > #25,0.82444,0.11315,-0.55453,118.32,0.082749,0.94518,0.31588,163.64,0.55987,-0.30631,0.76988,134.94
    20028 
    20029 > view matrix models
    20030 > #25,0.82444,0.11315,-0.55453,117.72,0.082749,0.94518,0.31588,160.75,0.55987,-0.30631,0.76988,146.41
    20031 
    20032 > ui mousemode right "rotate selected models"
    20033 
    20034 > view matrix models
    20035 > #25,0.82364,0.10196,-0.55788,119.56,0.0021836,0.98313,0.1829,181.65,0.56712,-0.15186,0.80952,122.31
    20036 
    20037 > view matrix models
    20038 > #25,0.79503,0.0096224,-0.6065,139.77,0.047196,0.99586,0.077666,187.98,0.60473,-0.090371,0.79128,112.97
    20039 
    20040 > ui mousemode right "translate selected models"
    20041 
    20042 > view matrix models
    20043 > #25,0.79503,0.0096224,-0.6065,134.71,0.047196,0.99586,0.077666,199.27,0.60473,-0.090371,0.79128,113.55
    20044 
    20045 > fitmap #25 inMap #16
    20046 
    20047 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage2_postprocess.mrc
    20048 using 65799 points 
    20049 correlation = 0.9339, correlation about mean = 0.1031, overlap = 7611 
    20050 steps = 84, shift = 13.5, angle = 15.7 degrees 
    20051  
    20052 Position of emd_3720_2017_leaf.map (#25) relative to
    20053 COPI_golph_linkage2_postprocess.mrc (#16) coordinates: 
    20054 Matrix rotation and translation 
    20055 -0.62663805 0.62168576 0.46992723 287.56800331 
    20056 -0.68561197 -0.72646035 0.04681471 442.22538085 
    20057 0.37048753 -0.29285185 0.88146288 198.63658823 
    20058 Axis -0.25079502 0.07342195 -0.96525182 
    20059 Axis point 210.77802438 182.28177259 0.00000000 
    20060 Rotation angle (degrees) 137.37636026 
    20061 Shift along axis -231.38590162 
    20062  
    20063 
    20064 > select subtract #25
    20065 
    20066 Nothing selected 
    20067 
    20068 > hide #!25 models
    20069 
    20070 > show #!25 models
    20071 
    20072 > hide #!25 models
    20073 
    20074 > show #!25 models
    20075 
    20076 > hide #!25 models
    20077 
    20078 > show #!25 models
    20079 
    20080 > show #!37 models
    20081 
    20082 > select add #37
    20083 
    20084 2 models selected 
    20085 
    20086 > view matrix models
    20087 > #37,0.96381,0.24767,-0.098598,239.78,-0.077897,0.61539,0.78437,-105.76,0.25494,-0.7483,0.61241,152.57
    20088 
    20089 > view matrix models
    20090 > #37,0.96381,0.24767,-0.098598,206.99,-0.077897,0.61539,0.78437,-72.23,0.25494,-0.7483,0.61241,245.22
    20091 
    20092 > ui mousemode right "rotate selected models"
    20093 
    20094 > view matrix models
    20095 > #37,0.62202,0.64809,0.43939,134.33,-0.75268,0.64956,0.10744,79.983,-0.21578,-0.39756,0.89185,223.61
    20096 
    20097 > view matrix models
    20098 > #37,0.40997,0.77171,0.4862,138.04,-0.81333,0.55057,-0.18806,133.56,-0.41281,-0.31834,0.85337,240.99
    20099 
    20100 > view matrix models
    20101 > #37,-0.84937,0.16887,-0.50006,469.05,-0.46516,-0.6872,0.55802,153.96,-0.24941,0.70657,0.66223,122.6
    20102 
    20103 > view matrix models
    20104 > #37,-0.73326,-0.67357,0.092966,486.56,0.66339,-0.73867,-0.11949,112.33,0.14915,-0.025941,0.98847,126.49
    20105 
    20106 > view matrix models
    20107 > #37,-0.52084,-0.69936,-0.48951,534.35,0.74653,-0.65127,0.13615,62.304,-0.41402,-0.29452,0.8613,237.35
    20108 
    20109 > view matrix models
    20110 > #37,-0.27139,-0.88159,-0.3862,515.69,0.9512,-0.3069,0.032134,10.266,-0.14685,-0.35863,0.92186,207.61
    20111 
    20112 > view matrix models
    20113 > #37,-0.34905,-0.82794,-0.43895,524.3,0.93677,-0.29585,-0.18689,36.434,0.024876,-0.47643,0.87886,207.32
    20114 
    20115 > ui mousemode right "translate selected models"
    20116 
    20117 > view matrix models
    20118 > #37,-0.34905,-0.82794,-0.43895,470.27,0.93677,-0.29585,-0.18689,114.81,0.024876,-0.47643,0.87886,182.01
    20119 
    20120 > view matrix models
    20121 > #37,-0.34905,-0.82794,-0.43895,423.27,0.93677,-0.29585,-0.18689,129.66,0.024876,-0.47643,0.87886,211.07
    20122 
    20123 > view matrix models
    20124 > #37,-0.34905,-0.82794,-0.43895,433.73,0.93677,-0.29585,-0.18689,115.37,0.024876,-0.47643,0.87886,224.56
    20125 
    20126 > view matrix models
    20127 > #37,-0.34905,-0.82794,-0.43895,431.04,0.93677,-0.29585,-0.18689,123.32,0.024876,-0.47643,0.87886,227.92
    20128 
    20129 > ui mousemode right "rotate selected models"
    20130 
    20131 > view matrix models
    20132 > #37,-0.56839,-0.71821,-0.40137,438.32,0.81856,-0.4444,-0.36398,175.35,0.083042,-0.53543,0.84049,232.92
    20133 
    20134 > view matrix models
    20135 > #37,-0.63257,-0.6482,-0.4239,439.88,0.77066,-0.47237,-0.42772,191.64,0.077011,-0.59725,0.79835,245.96
    20136 
    20137 > view matrix models
    20138 > #37,-0.6202,-0.62664,-0.47188,441.57,0.77532,-0.39822,-0.4902,189.63,0.11926,-0.66988,0.73283,257.59
    20139 
    20140 > ui mousemode right "translate selected models"
    20141 
    20142 > view matrix models
    20143 > #37,-0.6202,-0.62664,-0.47188,441.71,0.77532,-0.39822,-0.4902,189.51,0.11926,-0.66988,0.73283,261.88
    20144 
    20145 > fitmap #37 inMap #16
    20146 
    20147 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage2_postprocess.mrc
    20148 using 93502 points 
    20149 correlation = 0.9191, correlation about mean = 0.165, overlap = 9336 
    20150 steps = 64, shift = 12.5, angle = 7.56 degrees 
    20151  
    20152 Position of emd_3720_2017_leaf.map (#37) relative to
    20153 COPI_golph_linkage2_postprocess.mrc (#16) coordinates: 
    20154 Matrix rotation and translation 
    20155 0.90668337 0.31937657 -0.27554284 76.88435031 
    20156 -0.20060685 0.90112046 0.38436805 189.88270228 
    20157 0.37105544 -0.29322434 0.88110007 198.61642198 
    20158 Axis -0.63251755 -0.60358523 -0.48539305 
    20159 Axis point 0.00000000 255.83888741 -20.46397276 
    20160 Rotation angle (degrees) 32.38673476 
    20161 Shift along axis -259.64812684 
    20162  
    20163 
    20164 > fitmap #37 inMap #16
    20165 
    20166 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage2_postprocess.mrc
    20167 using 93502 points 
    20168 correlation = 0.9191, correlation about mean = 0.1652, overlap = 9336 
    20169 steps = 28, shift = 0.0546, angle = 0.0139 degrees 
    20170  
    20171 Position of emd_3720_2017_leaf.map (#37) relative to
    20172 COPI_golph_linkage2_postprocess.mrc (#16) coordinates: 
    20173 Matrix rotation and translation 
    20174 0.90661837 0.31937719 -0.27575590 76.93207441 
    20175 -0.20050948 0.90111427 0.38443337 189.84318091 
    20176 0.37126683 -0.29324268 0.88100491 198.55717456 
    20177 Axis -0.63244084 -0.60383366 -0.48518399 
    20178 Axis point 0.00000000 255.75993017 -20.24171337 
    20179 Rotation angle (degrees) 32.39563074 
    20180 Shift along axis -259.62544933 
    20181  
    20182 
    20183 > fitmap #37 inMap #16
    20184 
    20185 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage2_postprocess.mrc
    20186 using 93502 points 
    20187 correlation = 0.9191, correlation about mean = 0.1652, overlap = 9336 
    20188 steps = 36, shift = 0.00363, angle = 0.0146 degrees 
    20189  
    20190 Position of emd_3720_2017_leaf.map (#37) relative to
    20191 COPI_golph_linkage2_postprocess.mrc (#16) coordinates: 
    20192 Matrix rotation and translation 
    20193 0.90655889 0.31935421 -0.27597798 76.96690804 
    20194 -0.20038467 0.90111320 0.38450093 189.82105564 
    20195 0.37147940 -0.29327098 0.88090588 198.55093863 
    20196 Axis -0.63238191 -0.60409753 -0.48493227 
    20197 Axis point 0.00000000 255.83552652 -19.98037704 
    20198 Rotation angle (degrees) 32.40416229 
    20199 Shift along axis -259.62666700 
    20200  
    20201 
    20202 > fitmap #25 inMap #16
    20203 
    20204 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage2_postprocess.mrc
    20205 using 65799 points 
    20206 correlation = 0.9339, correlation about mean = 0.1028, overlap = 7611 
    20207 steps = 28, shift = 0.05, angle = 0.00498 degrees 
    20208  
    20209 Position of emd_3720_2017_leaf.map (#25) relative to
    20210 COPI_golph_linkage2_postprocess.mrc (#16) coordinates: 
    20211 Matrix rotation and translation 
    20212 -0.62657486 0.62172151 0.46996420 287.57614633 
    20213 -0.68564315 -0.72642717 0.04687301 442.22267746 
    20214 0.37053671 -0.29285828 0.88144007 198.67795716 
    20215 Axis -0.25082801 0.07340860 -0.96524426 
    20216 Axis point 210.78095647 182.27933421 0.00000000 
    20217 Rotation angle (degrees) 137.37324782 
    20218 Shift along axis -231.44196227 
    20219  
    20220 
    20221 > select subtract #37
    20222 
    20223 Nothing selected 
    20224 
    20225 > hide #!16 models
    20226 
    20227 > show #!16 models
    20228 
    20229 > hide #!16 models
    20230 
    20231 > show #!16 models
    20232 
    20233 > hide #!2 models
    20234 
    20235 > hide #!1 models
    20236 
    20237 > show #!1 models
    20238 
    20239 > hide #!1 models
    20240 
    20241 > hide #!16 models
    20242 
    20243 > hide #!37 models
    20244 
    20245 > show #!24 models
    20246 
    20247 > select add #24
    20248 
    20249 2 models selected 
    20250 
    20251 > select add #26
    20252 
    20253 9810 atoms, 10032 bonds, 1233 residues, 3 models selected 
    20254 
    20255 > select add #27
    20256 
    20257 17311 atoms, 17651 bonds, 2186 residues, 4 models selected 
    20258 
    20259 > select add #28
    20260 
    20261 18768 atoms, 19134 bonds, 2367 residues, 5 models selected 
    20262 
    20263 > select add #29
    20264 
    20265 20225 atoms, 20617 bonds, 2548 residues, 6 models selected 
    20266 
    20267 > select add #30
    20268 
    20269 27439 atoms, 27990 bonds, 3453 residues, 7 models selected 
    20270 
    20271 > select add #31
    20272 
    20273 28901 atoms, 29471 bonds, 3632 residues, 8 models selected 
    20274 
    20275 > select add #32
    20276 
    20277 35574 atoms, 36257 bonds, 1 pseudobond, 4485 residues, 10 models selected 
    20278 
    20279 > select add #33
    20280 
    20281 36994 atoms, 37698 bonds, 1 pseudobond, 4662 residues, 11 models selected 
    20282 
    20283 > select add #34
    20284 
    20285 39361 atoms, 40096 bonds, 1 pseudobond, 4960 residues, 12 models selected 
    20286 
    20287 > select add #35
    20288 
    20289 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 13 models selected 
    20290 
    20291 > view matrix models
    20292 > #24,-0.30897,0.50832,-0.80384,318.7,-0.9397,-0.29345,0.17562,584.87,-0.14662,0.80963,0.56833,11.434,#26,-0.24197,-0.17446,-0.95447,210.79,-0.81888,-0.49094,0.29734,398.75,-0.52046,0.85354,-0.024072,333.9,#27,0.77926,0.62163,0.079596,184.52,-0.2235,0.39431,-0.89139,402.07,-0.5855,0.67683,0.4462,288.47,#28,-0.96825,0.1898,-0.16272,238.1,0.17778,0.065136,-0.98191,438.26,-0.17577,-0.97966,-0.096811,256.64,#29,-0.1774,0.97716,0.11701,165.92,0.97638,0.18965,-0.10349,337.75,-0.12332,0.095884,-0.98772,259.8,#30,0.83619,-0.48061,0.2642,158.92,-0.015814,0.46039,0.88758,397.6,-0.54822,-0.74636,0.37737,263.05,#31,-0.84347,0.04321,-0.53544,21.318,0.10453,-0.96451,-0.24249,724.13,-0.52691,-0.2605,0.80901,379.14,#32,0.67253,0.51859,0.52799,185.18,-0.73996,0.48346,0.46767,337.43,-0.012731,-0.70521,0.70888,354.27,#33,-0.97686,0.1891,-0.099891,194.83,0.11777,0.86551,0.48685,335.75,0.17852,0.46382,-0.86776,297.15,#34,-0.79381,0.41854,0.44123,222.27,-0.36693,0.24897,-0.89631,363.97,-0.485,-0.87341,-0.044059,279.95,#35,0.1609,0.64572,0.74643,196.17,0.71148,-0.60004,0.36572,336.26,0.68404,0.47223,-0.55596,297.22
    20293 
    20294 > ui mousemode right "rotate selected models"
    20295 
    20296 > view matrix models
    20297 > #24,-0.4842,0.37787,-0.78915,381,-0.74227,-0.65492,0.14183,619.32,-0.46324,0.65444,0.59759,107.42,#26,-0.36722,-0.33228,-0.86876,214.33,-0.51893,-0.70195,0.48783,362.67,-0.77192,0.62996,0.085343,345.39,#27,0.75655,0.63932,-0.13745,192.63,-0.17442,-0.0052913,-0.98466,386.9,-0.63024,0.76892,0.10751,304.07,#28,-0.89592,0.26876,-0.35369,254.64,0.43318,0.35215,-0.82967,419.2,-0.098427,-0.89653,-0.43192,286.59,#29,0.036352,0.98585,0.16363,163.31,0.97363,-0.071837,0.21651,341.9,0.2252,0.15144,-0.96247,254.89,#30,0.85213,-0.32105,0.41327,168.55,-0.0095694,0.78002,0.62569,397.05,-0.52324,-0.53712,0.66161,278.81,#31,-0.76405,-0.13741,-0.63035,93.041,0.4587,-0.80277,-0.381,686.07,-0.45367,-0.58025,0.67639,501.96,#32,0.50523,0.656,0.56071,175.28,-0.81877,0.56968,0.071263,305.21,-0.27268,-0.4951,0.82494,343.25,#33,-0.94202,0.32926,0.064674,188.44,0.25942,0.59238,0.76275,321.04,0.21283,0.7353,-0.64345,289.07,#34,-0.81549,0.52219,0.24959,222.26,0.0024164,0.4343,-0.90076,346.75,-0.57877,-0.73396,-0.35543,282.65,#35,0.25431,0.47312,0.84349,189.84,0.38259,-0.85024,0.36155,321.2,0.88823,0.23077,-0.39724,289.31
    20298 
    20299 > view matrix models
    20300 > #24,-0.46887,0.3477,-0.81195,388.56,-0.66386,-0.74509,0.064284,636.62,-0.58263,0.56916,0.58017,155.23,#26,-0.33835,-0.36111,-0.86898,211.08,-0.40032,-0.78048,0.4802,350.66,-0.85162,0.51035,0.11951,347.59,#27,0.78053,0.60765,-0.14676,191.2,-0.091565,-0.1211,-0.98841,380.74,-0.61838,0.78492,-0.038882,309.32,#28,-0.88896,0.30663,-0.34019,254.02,0.45244,0.47268,-0.75623,414.51,-0.071081,-0.82617,-0.55892,299.06,#29,0.032218,0.97853,0.20356,163.65,0.93146,-0.10325,0.3489,343.48,0.36242,0.17836,-0.91479,253.13,#30,0.87255,-0.29503,0.38937,168.2,0.055422,0.85168,0.52113,394.63,-0.48537,-0.43313,0.75948,284.82,#31,-0.7427,-0.11795,-0.65916,85.218,0.5266,-0.71093,-0.46613,649.92,-0.41364,-0.6933,0.59011,543.61,#32,0.51164,0.67842,0.52723,171.85,-0.77731,0.62694,-0.052406,294.52,-0.36609,-0.38301,0.84811,335.79,#33,-0.94852,0.30228,0.094585,187.27,0.23684,0.47863,0.84547,317.72,0.21029,0.82434,-0.52558,284.96,#34,-0.79137,0.5537,0.25913,221.45,0.093224,0.52822,-0.84398,343.71,-0.60418,-0.64374,-0.46964,283.59,#35,0.22012,0.45901,0.86073,188.67,0.25012,-0.87943,0.40502,317.83,0.94286,0.12613,-0.30839,285.28
    20301 
    20302 > ui mousemode right "translate selected models"
    20303 
    20304 > view matrix models
    20305 > #24,-0.46887,0.3477,-0.81195,385.56,-0.66386,-0.74509,0.064284,827.18,-0.58263,0.56916,0.58017,90.938,#26,-0.33835,-0.36111,-0.86898,208.09,-0.40032,-0.78048,0.4802,541.22,-0.85162,0.51035,0.11951,283.31,#27,0.78053,0.60765,-0.14676,188.2,-0.091565,-0.1211,-0.98841,571.3,-0.61838,0.78492,-0.038882,245.03,#28,-0.88896,0.30663,-0.34019,251.03,0.45244,0.47268,-0.75623,605.07,-0.071081,-0.82617,-0.55892,234.77,#29,0.032218,0.97853,0.20356,160.66,0.93146,-0.10325,0.3489,534.04,0.36242,0.17836,-0.91479,188.84,#30,0.87255,-0.29503,0.38937,165.21,0.055422,0.85168,0.52113,585.18,-0.48537,-0.43313,0.75948,220.53,#31,-0.7427,-0.11795,-0.65916,82.221,0.5266,-0.71093,-0.46613,840.47,-0.41364,-0.6933,0.59011,479.33,#32,0.51164,0.67842,0.52723,168.85,-0.77731,0.62694,-0.052406,485.08,-0.36609,-0.38301,0.84811,271.5,#33,-0.94852,0.30228,0.094585,184.27,0.23684,0.47863,0.84547,508.28,0.21029,0.82434,-0.52558,220.68,#34,-0.79137,0.5537,0.25913,218.46,0.093224,0.52822,-0.84398,534.27,-0.60418,-0.64374,-0.46964,219.3,#35,0.22012,0.45901,0.86073,185.67,0.25012,-0.87943,0.40502,508.38,0.94286,0.12613,-0.30839,220.99
    20306 
    20307 > view matrix models
    20308 > #24,-0.46887,0.3477,-0.81195,366.71,-0.66386,-0.74509,0.064284,819.82,-0.58263,0.56916,0.58017,50.664,#26,-0.33835,-0.36111,-0.86898,189.23,-0.40032,-0.78048,0.4802,533.86,-0.85162,0.51035,0.11951,243.03,#27,0.78053,0.60765,-0.14676,169.35,-0.091565,-0.1211,-0.98841,563.94,-0.61838,0.78492,-0.038882,204.76,#28,-0.88896,0.30663,-0.34019,232.17,0.45244,0.47268,-0.75623,597.71,-0.071081,-0.82617,-0.55892,194.49,#29,0.032218,0.97853,0.20356,141.8,0.93146,-0.10325,0.3489,526.68,0.36242,0.17836,-0.91479,148.57,#30,0.87255,-0.29503,0.38937,146.35,0.055422,0.85168,0.52113,577.83,-0.48537,-0.43313,0.75948,180.26,#31,-0.7427,-0.11795,-0.65916,63.368,0.5266,-0.71093,-0.46613,833.12,-0.41364,-0.6933,0.59011,439.05,#32,0.51164,0.67842,0.52723,150,-0.77731,0.62694,-0.052406,477.72,-0.36609,-0.38301,0.84811,231.23,#33,-0.94852,0.30228,0.094585,165.42,0.23684,0.47863,0.84547,500.92,0.21029,0.82434,-0.52558,180.4,#34,-0.79137,0.5537,0.25913,199.6,0.093224,0.52822,-0.84398,526.91,-0.60418,-0.64374,-0.46964,179.03,#35,0.22012,0.45901,0.86073,166.82,0.25012,-0.87943,0.40502,501.03,0.94286,0.12613,-0.30839,180.72
    20309 
    20310 > ui mousemode right "rotate selected models"
    20311 
    20312 > view matrix models
    20313 > #24,-0.08969,-0.67215,-0.73497,465.99,0.93771,-0.30568,0.16512,347.67,-0.33564,-0.67438,0.65769,224.12,#26,0.30196,-0.93294,-0.19607,101.8,0.91571,0.22665,0.33182,458.07,-0.26513,-0.27974,0.92274,150.27,#27,0.73715,-0.40993,-0.53718,138.14,-0.10941,-0.85689,0.50376,483.94,-0.66681,-0.31257,-0.6765,178.12,#28,-0.074188,0.99192,-0.10289,188.69,0.4751,0.12587,0.87088,434.65,0.8768,0.015726,-0.4806,163.66,#29,0.21673,0.20846,0.95371,150.39,-0.60605,-0.73715,0.29885,552.07,0.76533,-0.64277,-0.033426,155.48,#30,0.7492,0.64523,-0.14958,154.49,-0.31151,0.14396,-0.93927,509.54,-0.58452,0.7503,0.30886,198.09,#31,0.28233,0.11207,-0.95275,56.035,0.56108,0.78628,0.25876,306.28,0.77812,-0.60762,0.15911,494.78,#32,0.085455,0.88634,-0.45508,66.038,0.1793,-0.46297,-0.86805,513.69,-0.98008,-0.0074183,-0.19849,128.87,#33,-0.42186,-0.25575,0.86985,122.65,0.42269,-0.90423,-0.060858,526.03,0.8021,0.342,0.48956,127.43,#34,0.18444,0.98246,0.027308,150.87,0.87966,-0.1774,0.44128,493.66,0.43839,-0.057368,-0.89695,126.23,#35,-0.49597,-0.36073,0.78987,123.03,-0.8346,-0.053083,-0.5483,524.84,0.23972,-0.93116,-0.27474,126.72
    20314 
    20315 > ui mousemode right "translate selected models"
    20316 
    20317 > view matrix models
    20318 > #24,-0.08969,-0.67215,-0.73497,602.78,0.93771,-0.30568,0.16512,196.94,-0.33564,-0.67438,0.65769,286.89,#26,0.30196,-0.93294,-0.19607,238.59,0.91571,0.22665,0.33182,307.33,-0.26513,-0.27974,0.92274,213.04,#27,0.73715,-0.40993,-0.53718,274.93,-0.10941,-0.85689,0.50376,333.2,-0.66681,-0.31257,-0.6765,240.88,#28,-0.074188,0.99192,-0.10289,325.48,0.4751,0.12587,0.87088,283.92,0.8768,0.015726,-0.4806,226.42,#29,0.21673,0.20846,0.95371,287.17,-0.60605,-0.73715,0.29885,401.34,0.76533,-0.64277,-0.033426,218.25,#30,0.7492,0.64523,-0.14958,291.28,-0.31151,0.14396,-0.93927,358.81,-0.58452,0.7503,0.30886,260.86,#31,0.28233,0.11207,-0.95275,192.82,0.56108,0.78628,0.25876,155.55,0.77812,-0.60762,0.15911,557.55,#32,0.085455,0.88634,-0.45508,202.82,0.1793,-0.46297,-0.86805,362.95,-0.98008,-0.0074183,-0.19849,191.64,#33,-0.42186,-0.25575,0.86985,259.44,0.42269,-0.90423,-0.060858,375.29,0.8021,0.342,0.48956,190.2,#34,0.18444,0.98246,0.027308,287.66,0.87966,-0.1774,0.44128,342.92,0.43839,-0.057368,-0.89695,188.99,#35,-0.49597,-0.36073,0.78987,259.82,-0.8346,-0.053083,-0.5483,374.1,0.23972,-0.93116,-0.27474,189.49
    20319 
    20320 > view matrix models
    20321 > #24,-0.08969,-0.67215,-0.73497,486.55,0.93771,-0.30568,0.16512,162.52,-0.33564,-0.67438,0.65769,309.88,#26,0.30196,-0.93294,-0.19607,122.36,0.91571,0.22665,0.33182,272.91,-0.26513,-0.27974,0.92274,236.03,#27,0.73715,-0.40993,-0.53718,158.7,-0.10941,-0.85689,0.50376,298.78,-0.66681,-0.31257,-0.6765,263.87,#28,-0.074188,0.99192,-0.10289,209.24,0.4751,0.12587,0.87088,249.5,0.8768,0.015726,-0.4806,249.42,#29,0.21673,0.20846,0.95371,170.94,-0.60605,-0.73715,0.29885,366.92,0.76533,-0.64277,-0.033426,241.24,#30,0.7492,0.64523,-0.14958,175.05,-0.31151,0.14396,-0.93927,324.38,-0.58452,0.7503,0.30886,283.85,#31,0.28233,0.11207,-0.95275,76.588,0.56108,0.78628,0.25876,121.13,0.77812,-0.60762,0.15911,580.54,#32,0.085455,0.88634,-0.45508,86.592,0.1793,-0.46297,-0.86805,328.53,-0.98008,-0.0074183,-0.19849,214.63,#33,-0.42186,-0.25575,0.86985,143.2,0.42269,-0.90423,-0.060858,340.87,0.8021,0.342,0.48956,213.19,#34,0.18444,0.98246,0.027308,171.42,0.87966,-0.1774,0.44128,308.5,0.43839,-0.057368,-0.89695,211.98,#35,-0.49597,-0.36073,0.78987,143.58,-0.8346,-0.053083,-0.5483,339.68,0.23972,-0.93116,-0.27474,212.48
    20322 
    20323 > view matrix models
    20324 > #24,-0.08969,-0.67215,-0.73497,487.15,0.93771,-0.30568,0.16512,161.83,-0.33564,-0.67438,0.65769,325.95,#26,0.30196,-0.93294,-0.19607,122.96,0.91571,0.22665,0.33182,272.22,-0.26513,-0.27974,0.92274,252.1,#27,0.73715,-0.40993,-0.53718,159.3,-0.10941,-0.85689,0.50376,298.09,-0.66681,-0.31257,-0.6765,279.95,#28,-0.074188,0.99192,-0.10289,209.85,0.4751,0.12587,0.87088,248.8,0.8768,0.015726,-0.4806,265.49,#29,0.21673,0.20846,0.95371,171.55,-0.60605,-0.73715,0.29885,366.22,0.76533,-0.64277,-0.033426,257.32,#30,0.7492,0.64523,-0.14958,175.65,-0.31151,0.14396,-0.93927,323.69,-0.58452,0.7503,0.30886,299.92,#31,0.28233,0.11207,-0.95275,77.194,0.56108,0.78628,0.25876,120.44,0.77812,-0.60762,0.15911,596.61,#32,0.085455,0.88634,-0.45508,87.198,0.1793,-0.46297,-0.86805,327.84,-0.98008,-0.0074183,-0.19849,230.7,#33,-0.42186,-0.25575,0.86985,143.81,0.42269,-0.90423,-0.060858,340.18,0.8021,0.342,0.48956,229.26,#34,0.18444,0.98246,0.027308,172.03,0.87966,-0.1774,0.44128,307.81,0.43839,-0.057368,-0.89695,228.06,#35,-0.49597,-0.36073,0.78987,144.19,-0.8346,-0.053083,-0.5483,338.99,0.23972,-0.93116,-0.27474,228.55
    20325 
    20326 > view matrix models
    20327 > #24,-0.08969,-0.67215,-0.73497,503.57,0.93771,-0.30568,0.16512,159.1,-0.33564,-0.67438,0.65769,333.22,#26,0.30196,-0.93294,-0.19607,139.38,0.91571,0.22665,0.33182,269.5,-0.26513,-0.27974,0.92274,259.37,#27,0.73715,-0.40993,-0.53718,175.72,-0.10941,-0.85689,0.50376,295.37,-0.66681,-0.31257,-0.6765,287.22,#28,-0.074188,0.99192,-0.10289,226.26,0.4751,0.12587,0.87088,246.08,0.8768,0.015726,-0.4806,272.76,#29,0.21673,0.20846,0.95371,187.96,-0.60605,-0.73715,0.29885,363.5,0.76533,-0.64277,-0.033426,264.59,#30,0.7492,0.64523,-0.14958,192.07,-0.31151,0.14396,-0.93927,320.97,-0.58452,0.7503,0.30886,307.19,#31,0.28233,0.11207,-0.95275,93.609,0.56108,0.78628,0.25876,117.71,0.77812,-0.60762,0.15911,603.88,#32,0.085455,0.88634,-0.45508,103.61,0.1793,-0.46297,-0.86805,325.11,-0.98008,-0.0074183,-0.19849,237.97,#33,-0.42186,-0.25575,0.86985,160.22,0.42269,-0.90423,-0.060858,337.46,0.8021,0.342,0.48956,236.53,#34,0.18444,0.98246,0.027308,188.44,0.87966,-0.1774,0.44128,305.09,0.43839,-0.057368,-0.89695,235.33,#35,-0.49597,-0.36073,0.78987,160.61,-0.8346,-0.053083,-0.5483,336.27,0.23972,-0.93116,-0.27474,235.82
    20328 
    20329 > ui mousemode right "rotate selected models"
    20330 
    20331 > view matrix models
    20332 > #24,-0.074452,-0.67754,-0.73171,500.46,0.92674,-0.31796,0.20013,156.27,-0.36825,-0.6632,0.65158,339.74,#26,0.31683,-0.92927,-0.18996,138.09,0.90077,0.23207,0.36709,270,-0.29704,-0.28742,0.91058,262.11,#27,0.7348,-0.42421,-0.52926,174.87,-0.14482,-0.86042,0.48857,296.23,-0.66265,-0.28235,-0.69367,289.03,#28,-0.065762,0.99387,-0.088849,224.59,0.50665,0.10997,0.85511,245.64,0.85964,0.011219,-0.51077,276.3,#29,0.20723,0.19586,0.95849,188.22,-0.58239,-0.76252,0.28173,363.32,0.78605,-0.6166,-0.043953,264.03,#30,0.74357,0.64802,-0.16483,191.65,-0.34409,0.15947,-0.9253,322.24,-0.57333,0.74474,0.34156,308.09,#31,0.29206,0.1246,-0.94825,90.06,0.58323,0.76258,0.27984,131.14,0.75798,-0.63478,0.15005,611.73,#32,0.087741,0.87859,-0.46945,103.24,0.14346,-0.4775,-0.86684,325.42,-0.98576,0.0087077,-0.16794,238.78,#33,-0.4143,-0.27038,0.86905,160.04,0.4574,-0.88737,-0.058026,336.77,0.78686,0.37346,0.49131,236.91,#34,0.1992,0.97937,0.033975,187.72,0.8913,-0.19548,0.40912,303.91,0.40732,-0.051215,-0.91185,236.83,#35,-0.50949,-0.36218,0.78054,160.4,-0.81741,-0.079678,-0.57053,335.55,0.26883,-0.9287,-0.25546,236.23
    20333 
    20334 > ui mousemode right "translate selected models"
    20335 
    20336 > view matrix models
    20337 > #24,-0.074452,-0.67754,-0.73171,496.69,0.92674,-0.31796,0.20013,159.15,-0.36825,-0.6632,0.65158,339.83,#26,0.31683,-0.92927,-0.18996,134.32,0.90077,0.23207,0.36709,272.88,-0.29704,-0.28742,0.91058,262.2,#27,0.7348,-0.42421,-0.52926,171.1,-0.14482,-0.86042,0.48857,299.11,-0.66265,-0.28235,-0.69367,289.12,#28,-0.065762,0.99387,-0.088849,220.82,0.50665,0.10997,0.85511,248.52,0.85964,0.011219,-0.51077,276.39,#29,0.20723,0.19586,0.95849,184.45,-0.58239,-0.76252,0.28173,366.2,0.78605,-0.6166,-0.043953,264.12,#30,0.74357,0.64802,-0.16483,187.88,-0.34409,0.15947,-0.9253,325.12,-0.57333,0.74474,0.34156,308.18,#31,0.29206,0.1246,-0.94825,86.286,0.58323,0.76258,0.27984,134.02,0.75798,-0.63478,0.15005,611.82,#32,0.087741,0.87859,-0.46945,99.461,0.14346,-0.4775,-0.86684,328.3,-0.98576,0.0087077,-0.16794,238.87,#33,-0.4143,-0.27038,0.86905,156.27,0.4574,-0.88737,-0.058026,339.65,0.78686,0.37346,0.49131,237,#34,0.1992,0.97937,0.033975,183.95,0.8913,-0.19548,0.40912,306.79,0.40732,-0.051215,-0.91185,236.92,#35,-0.50949,-0.36218,0.78054,156.63,-0.81741,-0.079678,-0.57053,338.43,0.26883,-0.9287,-0.25546,236.32
    20338 
    20339 > ui mousemode right "rotate selected models"
    20340 
    20341 > view matrix models
    20342 > #24,0.015488,-0.70572,-0.70832,476.73,0.75907,-0.45281,0.46774,164.57,-0.65083,-0.54491,0.52867,407.6,#26,0.40246,-0.90261,-0.15273,127.04,0.72182,0.21028,0.65936,279.65,-0.56302,-0.37561,0.73615,286.17,#27,0.71676,-0.50588,-0.47994,166.21,-0.41958,-0.8626,0.28262,309.71,-0.55697,-0.0011933,-0.83053,304.25,#28,-0.015624,0.99986,-0.0059027,210.77,0.76268,0.015735,0.64658,253.39,0.64659,0.0056,-0.76282,310.14,#29,0.1504,0.12048,0.98126,185.98,-0.31122,-0.93631,0.16267,363.48,0.93836,-0.32985,-0.10332,259.28,#30,0.70623,0.66103,-0.25352,185.45,-0.57883,0.33292,-0.74439,338.85,-0.40766,0.67246,0.61775,314.36,#31,0.34786,0.19747,-0.91651,66.042,0.76875,0.49951,0.3994,267.21,0.53667,-0.8435,0.021953,660.26,#32,0.10045,0.82814,-0.55145,97.698,-0.19398,-0.52731,-0.82723,327.41,-0.97585,0.19006,0.10767,245.08,#33,-0.36735,-0.35487,0.85972,155.34,0.7247,-0.6886,0.025417,332.26,0.58298,0.63237,0.51013,241.37,#34,0.28503,0.95575,0.072764,179.7,0.95303,-0.2907,0.08502,298.77,0.10241,0.045112,-0.99372,252.8,#35,-0.58615,-0.36895,0.72132,155.58,-0.63484,-0.34401,-0.69184,330.86,0.50339,-0.86344,-0.032581,241.15
    20343 
    20344 > ui mousemode right "translate selected models"
    20345 
    20346 > view matrix models
    20347 > #24,0.015488,-0.70572,-0.70832,485.32,0.75907,-0.45281,0.46774,145.51,-0.65083,-0.54491,0.52867,389.02,#26,0.40246,-0.90261,-0.15273,135.62,0.72182,0.21028,0.65936,260.59,-0.56302,-0.37561,0.73615,267.59,#27,0.71676,-0.50588,-0.47994,174.8,-0.41958,-0.8626,0.28262,290.65,-0.55697,-0.0011933,-0.83053,285.67,#28,-0.015624,0.99986,-0.0059027,219.36,0.76268,0.015735,0.64658,234.33,0.64659,0.0056,-0.76282,291.56,#29,0.1504,0.12048,0.98126,194.57,-0.31122,-0.93631,0.16267,344.42,0.93836,-0.32985,-0.10332,240.7,#30,0.70623,0.66103,-0.25352,194.04,-0.57883,0.33292,-0.74439,319.79,-0.40766,0.67246,0.61775,295.78,#31,0.34786,0.19747,-0.91651,74.629,0.76875,0.49951,0.3994,248.15,0.53667,-0.8435,0.021953,641.68,#32,0.10045,0.82814,-0.55145,106.29,-0.19398,-0.52731,-0.82723,308.35,-0.97585,0.19006,0.10767,226.49,#33,-0.36735,-0.35487,0.85972,163.92,0.7247,-0.6886,0.025417,313.19,0.58298,0.63237,0.51013,222.79,#34,0.28503,0.95575,0.072764,188.29,0.95303,-0.2907,0.08502,279.71,0.10241,0.045112,-0.99372,234.22,#35,-0.58615,-0.36895,0.72132,164.16,-0.63484,-0.34401,-0.69184,311.8,0.50339,-0.86344,-0.032581,222.56
    20348 
    20349 > view matrix models
    20350 > #24,0.015488,-0.70572,-0.70832,486.53,0.75907,-0.45281,0.46774,148.75,-0.65083,-0.54491,0.52867,389.15,#26,0.40246,-0.90261,-0.15273,136.84,0.72182,0.21028,0.65936,263.83,-0.56302,-0.37561,0.73615,267.72,#27,0.71676,-0.50588,-0.47994,176.01,-0.41958,-0.8626,0.28262,293.89,-0.55697,-0.0011933,-0.83053,285.8,#28,-0.015624,0.99986,-0.0059027,220.58,0.76268,0.015735,0.64658,237.57,0.64659,0.0056,-0.76282,291.69,#29,0.1504,0.12048,0.98126,195.78,-0.31122,-0.93631,0.16267,347.66,0.93836,-0.32985,-0.10332,240.83,#30,0.70623,0.66103,-0.25352,195.25,-0.57883,0.33292,-0.74439,323.03,-0.40766,0.67246,0.61775,295.91,#31,0.34786,0.19747,-0.91651,75.844,0.76875,0.49951,0.3994,251.4,0.53667,-0.8435,0.021953,641.81,#32,0.10045,0.82814,-0.55145,107.5,-0.19398,-0.52731,-0.82723,311.59,-0.97585,0.19006,0.10767,226.63,#33,-0.36735,-0.35487,0.85972,165.14,0.7247,-0.6886,0.025417,316.44,0.58298,0.63237,0.51013,222.93,#34,0.28503,0.95575,0.072764,189.5,0.95303,-0.2907,0.08502,282.95,0.10241,0.045112,-0.99372,234.35,#35,-0.58615,-0.36895,0.72132,165.38,-0.63484,-0.34401,-0.69184,315.04,0.50339,-0.86344,-0.032581,222.7
    20351 
    20352 > view matrix models
    20353 > #24,0.015488,-0.70572,-0.70832,487.92,0.75907,-0.45281,0.46774,150.64,-0.65083,-0.54491,0.52867,386.46,#26,0.40246,-0.90261,-0.15273,138.23,0.72182,0.21028,0.65936,265.72,-0.56302,-0.37561,0.73615,265.03,#27,0.71676,-0.50588,-0.47994,177.4,-0.41958,-0.8626,0.28262,295.78,-0.55697,-0.0011933,-0.83053,283.11,#28,-0.015624,0.99986,-0.0059027,221.96,0.76268,0.015735,0.64658,239.46,0.64659,0.0056,-0.76282,289.01,#29,0.1504,0.12048,0.98126,197.17,-0.31122,-0.93631,0.16267,349.55,0.93836,-0.32985,-0.10332,238.14,#30,0.70623,0.66103,-0.25352,196.64,-0.57883,0.33292,-0.74439,324.92,-0.40766,0.67246,0.61775,293.22,#31,0.34786,0.19747,-0.91651,77.232,0.76875,0.49951,0.3994,253.28,0.53667,-0.8435,0.021953,639.12,#32,0.10045,0.82814,-0.55145,108.89,-0.19398,-0.52731,-0.82723,313.48,-0.97585,0.19006,0.10767,223.94,#33,-0.36735,-0.35487,0.85972,166.53,0.7247,-0.6886,0.025417,318.32,0.58298,0.63237,0.51013,220.24,#34,0.28503,0.95575,0.072764,190.89,0.95303,-0.2907,0.08502,284.84,0.10241,0.045112,-0.99372,231.66,#35,-0.58615,-0.36895,0.72132,166.77,-0.63484,-0.34401,-0.69184,316.93,0.50339,-0.86344,-0.032581,220.01
    20354 
    20355 > ui mousemode right "rotate selected models"
    20356 
    20357 > view matrix models
    20358 > #24,-0.35722,-0.60979,-0.7075,553.12,0.5609,-0.74574,0.35954,277.56,-0.74685,-0.2684,0.60842,335.71,#26,0.029983,-0.97595,-0.21593,168.65,0.65499,-0.144,0.74179,258.66,-0.75504,-0.16368,0.63492,289.88,#27,0.69421,-0.18747,-0.69493,198.57,-0.31886,-0.94568,-0.063411,301.83,-0.64529,0.2656,-0.71628,292.38,#28,-0.13975,0.92175,-0.36172,259.32,0.85575,0.29621,0.4242,263.21,0.49815,-0.25027,-0.83019,295.78,#29,0.41968,0.35385,0.83586,190.78,-0.030652,-0.91483,0.40267,347.05,0.90715,-0.19462,-0.37309,235.83,#30,0.76485,0.63182,0.12572,208.82,-0.43562,0.65104,-0.6216,336.71,-0.47459,0.42067,0.77318,292.47,#31,0.17388,-0.14086,-0.97464,187.58,0.93786,0.32552,0.12027,316.53,0.30032,-0.93498,0.18871,664.19,#32,-0.029887,0.97495,-0.22043,118.08,-0.37835,-0.21515,-0.90031,285.42,-0.92518,0.056491,0.3753,250.42,#33,-0.46517,0.016482,0.88507,169.16,0.70706,-0.59465,0.38269,305.23,0.53261,0.80381,0.26496,231.52,#34,-0.027194,0.98833,-0.14988,204.82,0.99144,0.0075153,-0.13033,283.51,-0.12769,-0.15214,-0.98008,241.64,#35,-0.2398,-0.39418,0.8872,169.8,-0.63924,-0.62369,-0.44988,303.95,0.73066,-0.67501,-0.10242,231.47
    20359 
    20360 > ui mousemode right "translate selected models"
    20361 
    20362 > view matrix models
    20363 > #24,-0.35722,-0.60979,-0.7075,552.21,0.5609,-0.74574,0.35954,297.3,-0.74685,-0.2684,0.60842,331.38,#26,0.029983,-0.97595,-0.21593,167.74,0.65499,-0.144,0.74179,278.39,-0.75504,-0.16368,0.63492,285.55,#27,0.69421,-0.18747,-0.69493,197.66,-0.31886,-0.94568,-0.063411,321.56,-0.64529,0.2656,-0.71628,288.05,#28,-0.13975,0.92175,-0.36172,258.41,0.85575,0.29621,0.4242,282.95,0.49815,-0.25027,-0.83019,291.45,#29,0.41968,0.35385,0.83586,189.87,-0.030652,-0.91483,0.40267,366.79,0.90715,-0.19462,-0.37309,231.5,#30,0.76485,0.63182,0.12572,207.91,-0.43562,0.65104,-0.6216,356.44,-0.47459,0.42067,0.77318,288.14,#31,0.17388,-0.14086,-0.97464,186.67,0.93786,0.32552,0.12027,336.27,0.30032,-0.93498,0.18871,659.86,#32,-0.029887,0.97495,-0.22043,117.17,-0.37835,-0.21515,-0.90031,305.16,-0.92518,0.056491,0.3753,246.09,#33,-0.46517,0.016482,0.88507,168.25,0.70706,-0.59465,0.38269,324.97,0.53261,0.80381,0.26496,227.19,#34,-0.027194,0.98833,-0.14988,203.91,0.99144,0.0075153,-0.13033,303.25,-0.12769,-0.15214,-0.98008,237.31,#35,-0.2398,-0.39418,0.8872,168.89,-0.63924,-0.62369,-0.44988,323.68,0.73066,-0.67501,-0.10242,227.14
    20364 
    20365 > view matrix models
    20366 > #24,-0.35722,-0.60979,-0.7075,543.3,0.5609,-0.74574,0.35954,277.35,-0.74685,-0.2684,0.60842,339.23,#26,0.029983,-0.97595,-0.21593,158.83,0.65499,-0.144,0.74179,258.44,-0.75504,-0.16368,0.63492,293.39,#27,0.69421,-0.18747,-0.69493,188.75,-0.31886,-0.94568,-0.063411,301.61,-0.64529,0.2656,-0.71628,295.89,#28,-0.13975,0.92175,-0.36172,249.5,0.85575,0.29621,0.4242,263,0.49815,-0.25027,-0.83019,299.29,#29,0.41968,0.35385,0.83586,180.96,-0.030652,-0.91483,0.40267,346.84,0.90715,-0.19462,-0.37309,239.34,#30,0.76485,0.63182,0.12572,199,-0.43562,0.65104,-0.6216,336.49,-0.47459,0.42067,0.77318,295.98,#31,0.17388,-0.14086,-0.97464,177.76,0.93786,0.32552,0.12027,316.32,0.30032,-0.93498,0.18871,667.7,#32,-0.029887,0.97495,-0.22043,108.26,-0.37835,-0.21515,-0.90031,285.2,-0.92518,0.056491,0.3753,253.94,#33,-0.46517,0.016482,0.88507,159.35,0.70706,-0.59465,0.38269,305.02,0.53261,0.80381,0.26496,235.04,#34,-0.027194,0.98833,-0.14988,195,0.99144,0.0075153,-0.13033,283.29,-0.12769,-0.15214,-0.98008,245.16,#35,-0.2398,-0.39418,0.8872,159.98,-0.63924,-0.62369,-0.44988,303.73,0.73066,-0.67501,-0.10242,234.98
    20367 
    20368 > view matrix models
    20369 > #24,-0.35722,-0.60979,-0.7075,532.66,0.5609,-0.74574,0.35954,267.9,-0.74685,-0.2684,0.60842,340.62,#26,0.029983,-0.97595,-0.21593,148.19,0.65499,-0.144,0.74179,249,-0.75504,-0.16368,0.63492,294.79,#27,0.69421,-0.18747,-0.69493,178.11,-0.31886,-0.94568,-0.063411,292.17,-0.64529,0.2656,-0.71628,297.29,#28,-0.13975,0.92175,-0.36172,238.86,0.85575,0.29621,0.4242,253.55,0.49815,-0.25027,-0.83019,300.69,#29,0.41968,0.35385,0.83586,170.32,-0.030652,-0.91483,0.40267,337.39,0.90715,-0.19462,-0.37309,240.74,#30,0.76485,0.63182,0.12572,188.36,-0.43562,0.65104,-0.6216,327.05,-0.47459,0.42067,0.77318,297.38,#31,0.17388,-0.14086,-0.97464,167.12,0.93786,0.32552,0.12027,306.87,0.30032,-0.93498,0.18871,669.1,#32,-0.029887,0.97495,-0.22043,97.622,-0.37835,-0.21515,-0.90031,275.76,-0.92518,0.056491,0.3753,255.33,#33,-0.46517,0.016482,0.88507,148.71,0.70706,-0.59465,0.38269,295.57,0.53261,0.80381,0.26496,236.43,#34,-0.027194,0.98833,-0.14988,184.36,0.99144,0.0075153,-0.13033,273.85,-0.12769,-0.15214,-0.98008,246.55,#35,-0.2398,-0.39418,0.8872,149.34,-0.63924,-0.62369,-0.44988,294.28,0.73066,-0.67501,-0.10242,236.38
    20370 
    20371 > ui mousemode right "rotate selected models"
    20372 
    20373 > view matrix models
    20374 > #24,-0.21904,-0.50768,-0.83323,508.98,0.63559,-0.72217,0.27293,265.5,-0.7403,-0.46981,0.48086,407.33,#26,0.15696,-0.91362,-0.37506,143.55,0.73781,-0.14397,0.65948,244.21,-0.6565,-0.38024,0.65148,279.74,#27,0.8261,-0.19677,-0.52805,170.38,-0.22856,-0.97352,0.0051966,287.4,-0.51509,0.1164,-0.8492,293.14,#28,-0.27727,0.93971,-0.20019,230.74,0.7899,0.34156,0.5093,249.89,0.54697,-0.016913,-0.83698,305.07,#29,0.22364,0.42625,0.87653,172.49,-0.1261,-0.87909,0.45967,338.66,0.96648,-0.21333,-0.14285,241.44,#30,0.86491,0.50183,-0.010004,178.84,-0.36269,0.61108,-0.70358,322.24,-0.34697,0.61217,0.71054,299.16,#31,0.066618,0.041704,-0.99691,81.986,0.9005,0.42779,0.078071,259.1,0.42972,-0.90292,-0.0090558,653.65,#32,0.17899,0.95058,-0.25369,101.12,-0.27016,-0.20045,-0.94172,274.3,-0.94603,0.2371,0.22094,233.64,#33,-0.59594,-0.1243,0.79335,154.09,0.63169,-0.68255,0.36756,297.18,0.49581,0.7202,0.48527,228.19,#34,-0.043601,0.99711,0.062218,187.8,0.99879,0.04492,-0.019959,275.16,-0.022696,0.061272,-0.99786,243.18,#35,-0.35766,-0.2181,0.90803,154.78,-0.72361,-0.54991,-0.41711,295.92,0.59031,-0.80624,0.038861,228.13
    20375 
    20376 > view matrix models
    20377 > #24,-0.041943,-0.22419,-0.97364,443.77,0.57541,-0.80209,0.1599,320.02,-0.81679,-0.55353,0.16264,511.75,#26,0.2682,-0.70861,-0.65264,147.47,0.73441,-0.28804,0.61455,241.37,-0.62347,-0.64413,0.44316,274.49,#27,0.97255,-0.09542,-0.21225,162.46,-0.11804,-0.98831,-0.096544,288.41,-0.20055,0.11895,-0.97243,292.59,#28,-0.54362,0.83898,0.024231,219.79,0.75506,0.47622,0.45066,260.58,0.36656,0.26328,-0.89237,326.23,#29,-0.095298,0.58373,0.80633,174.9,-0.064762,-0.81194,0.58014,337.96,0.99334,0.0030664,0.11518,240.68,#30,0.97052,0.18598,-0.1533,163.82,-0.24024,0.69535,-0.67733,324.27,-0.019374,0.6942,0.71953,298.39,#31,-0.19786,0.28274,-0.93857,-36.055,0.91202,0.40403,-0.070551,257.36,0.35927,-0.86995,-0.3378,605.97,#32,0.51639,0.83559,-0.18743,119.2,-0.26686,-0.050959,-0.96239,263.56,-0.81371,0.54698,0.19667,215,#33,-0.80372,-0.26603,0.53222,167.52,0.55008,-0.67318,0.49421,293.86,0.22681,0.68997,0.68738,225.32,#34,-0.16354,0.90538,0.39184,196.9,0.98033,0.19362,-0.038214,277.5,-0.11047,0.37788,-0.91924,252.05,#35,-0.4356,0.13552,0.88988,168.34,-0.7519,-0.59828,-0.27694,292.72,0.49487,-0.78974,0.36251,225.58
    20378 
    20379 > view matrix models
    20380 > #24,-0.27058,-0.62226,-0.73456,521.51,0.65435,-0.67854,0.33377,239.13,-0.70612,-0.39035,0.59078,359.49,#26,0.12017,-0.96605,-0.22871,141.31,0.7269,-0.071283,0.68303,246.67,-0.67614,-0.24833,0.69366,284.21,#27,0.72616,-0.25291,-0.63932,172.99,-0.28881,-0.95607,0.050177,287.6,-0.62392,0.14821,-0.7673,293.49,#28,-0.13671,0.95163,-0.27516,231.36,0.80608,0.26832,0.52749,245.5,0.5758,-0.14969,-0.80377,297.11,#29,0.34584,0.32344,0.88078,171.81,-0.14789,-0.90818,0.39158,338.81,0.92656,-0.26569,-0.26625,241.72,#30,0.7776,0.62779,0.035077,184.87,-0.42639,0.5675,-0.70437,321.66,-0.4621,0.53276,0.70897,298.07,#31,0.19495,-0.051819,-0.97944,133.82,0.89049,0.42794,0.1546,264.34,0.41113,-0.90232,0.12957,662.96,#32,0.024019,0.95609,-0.29208,95.312,-0.27828,-0.27422,-0.92052,280.17,-0.9602,0.10339,0.25947,244.31,#33,-0.47061,-0.074793,0.87916,148.61,0.67312,-0.67464,0.30293,298.94,0.57047,0.73434,0.36784,231.39,#34,0.030616,0.99638,-0.079245,182.28,0.99929,-0.032262,-0.019566,274.32,-0.022051,-0.07859,-0.99666,241.67,#35,-0.32645,-0.37003,0.86977,149.18,-0.69697,-0.52735,-0.48594,297.63,0.63849,-0.76484,-0.085747,231.24
    20381 
    20382 > view matrix models
    20383 > #24,-0.24658,-0.47056,-0.84721,510.95,0.81148,-0.57817,0.084954,238.76,-0.52981,-0.66655,0.52442,389.02,#26,0.12375,-0.90419,-0.40882,147.45,0.90202,-0.069212,0.42612,238.73,-0.41358,-0.42149,0.80703,254.34,#27,0.83808,-0.15013,-0.52448,172.12,-0.032969,-0.97357,0.226,277.39,-0.54455,-0.17211,-0.82088,280.06,#28,-0.31702,0.92224,-0.2213,234.18,0.58539,0.37386,0.7194,240.79,0.7462,0.098518,-0.6584,281.75,#29,0.2258,0.46886,0.85392,171.96,-0.38914,-0.76018,0.52029,341.41,0.89307,-0.44978,0.010809,245.34,#30,0.88266,0.46953,0.021185,178.88,-0.20798,0.43062,-0.87824,309.36,-0.42148,0.77079,0.47774,296,#31,0.021581,0.024476,-0.99947,83.835,0.74045,0.67133,0.032428,142.43,0.67176,-0.74076,-0.0036349,615.58,#32,0.19535,0.95823,-0.2089,103.8,0.022341,-0.2173,-0.97585,278.89,-0.98048,0.18597,-0.063859,218.11,#33,-0.62752,-0.094022,0.77291,155.63,0.43447,-0.86605,0.24739,304.73,0.64611,0.49104,0.58431,220.39,#34,-0.091532,0.99355,0.066872,190.3,0.95992,0.07017,0.27135,280.87,0.26491,0.089029,-0.96016,229.01,#35,-0.32465,-0.18834,0.92689,156.38,-0.87839,-0.3034,-0.36931,303.58,0.35077,-0.93407,-0.066937,219.99
    20384 
    20385 > ui mousemode right "translate selected models"
    20386 
    20387 > view matrix models
    20388 > #24,-0.24658,-0.47056,-0.84721,517.77,0.81148,-0.57817,0.084954,256.64,-0.52981,-0.66655,0.52442,390.48,#26,0.12375,-0.90419,-0.40882,154.27,0.90202,-0.069212,0.42612,256.61,-0.41358,-0.42149,0.80703,255.79,#27,0.83808,-0.15013,-0.52448,178.95,-0.032969,-0.97357,0.226,295.27,-0.54455,-0.17211,-0.82088,281.52,#28,-0.31702,0.92224,-0.2213,241,0.58539,0.37386,0.7194,258.66,0.7462,0.098518,-0.6584,283.2,#29,0.2258,0.46886,0.85392,178.78,-0.38914,-0.76018,0.52029,359.29,0.89307,-0.44978,0.010809,246.8,#30,0.88266,0.46953,0.021185,185.7,-0.20798,0.43062,-0.87824,327.24,-0.42148,0.77079,0.47774,297.45,#31,0.021581,0.024476,-0.99947,90.656,0.74045,0.67133,0.032428,160.3,0.67176,-0.74076,-0.0036349,617.03,#32,0.19535,0.95823,-0.2089,110.62,0.022341,-0.2173,-0.97585,296.76,-0.98048,0.18597,-0.063859,219.56,#33,-0.62752,-0.094022,0.77291,162.45,0.43447,-0.86605,0.24739,322.61,0.64611,0.49104,0.58431,221.85,#34,-0.091532,0.99355,0.066872,197.12,0.95992,0.07017,0.27135,298.74,0.26491,0.089029,-0.96016,230.46,#35,-0.32465,-0.18834,0.92689,163.2,-0.87839,-0.3034,-0.36931,321.45,0.35077,-0.93407,-0.066937,221.44
    20389 
    20390 > view matrix models
    20391 > #24,-0.24658,-0.47056,-0.84721,512.22,0.81148,-0.57817,0.084954,255.44,-0.52981,-0.66655,0.52442,387.71,#26,0.12375,-0.90419,-0.40882,148.72,0.90202,-0.069212,0.42612,255.41,-0.41358,-0.42149,0.80703,253.02,#27,0.83808,-0.15013,-0.52448,173.39,-0.032969,-0.97357,0.226,294.07,-0.54455,-0.17211,-0.82088,278.75,#28,-0.31702,0.92224,-0.2213,235.44,0.58539,0.37386,0.7194,257.47,0.7462,0.098518,-0.6584,280.43,#29,0.2258,0.46886,0.85392,173.23,-0.38914,-0.76018,0.52029,358.09,0.89307,-0.44978,0.010809,244.03,#30,0.88266,0.46953,0.021185,180.14,-0.20798,0.43062,-0.87824,326.04,-0.42148,0.77079,0.47774,294.68,#31,0.021581,0.024476,-0.99947,85.101,0.74045,0.67133,0.032428,159.1,0.67176,-0.74076,-0.0036349,614.26,#32,0.19535,0.95823,-0.2089,105.07,0.022341,-0.2173,-0.97585,295.57,-0.98048,0.18597,-0.063859,216.79,#33,-0.62752,-0.094022,0.77291,156.9,0.43447,-0.86605,0.24739,321.41,0.64611,0.49104,0.58431,219.08,#34,-0.091532,0.99355,0.066872,191.56,0.95992,0.07017,0.27135,297.54,0.26491,0.089029,-0.96016,227.69,#35,-0.32465,-0.18834,0.92689,157.64,-0.87839,-0.3034,-0.36931,320.25,0.35077,-0.93407,-0.066937,218.67
    20392 
    20393 > view matrix models
    20394 > #24,-0.24658,-0.47056,-0.84721,518.26,0.81148,-0.57817,0.084954,261.35,-0.52981,-0.66655,0.52442,391.38,#26,0.12375,-0.90419,-0.40882,154.76,0.90202,-0.069212,0.42612,261.32,-0.41358,-0.42149,0.80703,256.69,#27,0.83808,-0.15013,-0.52448,179.43,-0.032969,-0.97357,0.226,299.98,-0.54455,-0.17211,-0.82088,282.42,#28,-0.31702,0.92224,-0.2213,241.48,0.58539,0.37386,0.7194,263.38,0.7462,0.098518,-0.6584,284.1,#29,0.2258,0.46886,0.85392,179.27,-0.38914,-0.76018,0.52029,364,0.89307,-0.44978,0.010809,247.7,#30,0.88266,0.46953,0.021185,186.19,-0.20798,0.43062,-0.87824,331.95,-0.42148,0.77079,0.47774,298.35,#31,0.021581,0.024476,-0.99947,91.143,0.74045,0.67133,0.032428,165.02,0.67176,-0.74076,-0.0036349,617.93,#32,0.19535,0.95823,-0.2089,111.11,0.022341,-0.2173,-0.97585,301.48,-0.98048,0.18597,-0.063859,220.46,#33,-0.62752,-0.094022,0.77291,162.94,0.43447,-0.86605,0.24739,327.32,0.64611,0.49104,0.58431,222.75,#34,-0.091532,0.99355,0.066872,197.61,0.95992,0.07017,0.27135,303.46,0.26491,0.089029,-0.96016,231.36,#35,-0.32465,-0.18834,0.92689,163.69,-0.87839,-0.3034,-0.36931,326.17,0.35077,-0.93407,-0.066937,222.34
    20395 
    20396 > view matrix models
    20397 > #24,-0.24658,-0.47056,-0.84721,520.55,0.81148,-0.57817,0.084954,256.18,-0.52981,-0.66655,0.52442,395.97,#26,0.12375,-0.90419,-0.40882,157.06,0.90202,-0.069212,0.42612,256.15,-0.41358,-0.42149,0.80703,261.28,#27,0.83808,-0.15013,-0.52448,181.73,-0.032969,-0.97357,0.226,294.81,-0.54455,-0.17211,-0.82088,287,#28,-0.31702,0.92224,-0.2213,243.78,0.58539,0.37386,0.7194,258.2,0.7462,0.098518,-0.6584,288.69,#29,0.2258,0.46886,0.85392,181.57,-0.38914,-0.76018,0.52029,358.83,0.89307,-0.44978,0.010809,252.28,#30,0.88266,0.46953,0.021185,188.48,-0.20798,0.43062,-0.87824,326.78,-0.42148,0.77079,0.47774,302.94,#31,0.021581,0.024476,-0.99947,93.438,0.74045,0.67133,0.032428,159.84,0.67176,-0.74076,-0.0036349,622.52,#32,0.19535,0.95823,-0.2089,113.4,0.022341,-0.2173,-0.97585,296.31,-0.98048,0.18597,-0.063859,225.05,#33,-0.62752,-0.094022,0.77291,165.23,0.43447,-0.86605,0.24739,322.15,0.64611,0.49104,0.58431,227.33,#34,-0.091532,0.99355,0.066872,199.9,0.95992,0.07017,0.27135,298.28,0.26491,0.089029,-0.96016,235.95,#35,-0.32465,-0.18834,0.92689,165.98,-0.87839,-0.3034,-0.36931,320.99,0.35077,-0.93407,-0.066937,226.93
    20398 
    20399 > ui mousemode right "rotate selected models"
    20400 
    20401 > view matrix models
    20402 > #24,-0.31794,-0.62339,-0.71435,537.58,0.87687,-0.47988,0.028498,234.39,-0.36057,-0.61733,0.6992,309.16,#26,0.071957,-0.97447,-0.21266,154.27,0.94616,-0.00077428,0.32369,257.12,-0.31559,-0.22451,0.92195,256.03,#27,0.70339,-0.22333,-0.67481,185.37,0.025786,-0.94072,0.33821,291.76,-0.71034,-0.25529,-0.65593,280.5,#28,-0.12907,0.93721,-0.32401,244.81,0.48816,0.34447,0.8019,254.34,0.86315,-0.05467,-0.50197,264.39,#29,0.39132,0.33217,0.85822,180.61,-0.50498,-0.70212,0.50201,359.74,0.76933,-0.62983,-0.10701,254.8,#30,0.7654,0.63804,0.084061,196.64,-0.16435,0.32008,-0.93303,321.29,-0.62221,0.70033,0.34985,298.46,#31,0.19262,-0.10315,-0.97584,163.72,0.64663,0.76135,0.047159,115.69,0.73809,-0.64009,0.21335,607.78,#32,-0.013478,0.966,-0.25818,105.71,0.14654,-0.25351,-0.95617,302.27,-0.98911,-0.050721,-0.13814,235.19,#33,-0.45966,-0.025197,0.88774,157.9,0.35603,-0.92098,0.15821,326.84,0.81361,0.38879,0.43231,229.56,#34,0.0060954,0.99222,-0.12435,192.58,0.91866,0.043566,0.39265,301.56,0.39501,-0.11663,-0.91124,227.57,#35,-0.28039,-0.3922,0.8761,158.5,-0.91166,-0.17685,-0.37094,325.74,0.30043,-0.90272,-0.30797,228.86
    20403 
    20404 > view matrix models
    20405 > #24,-0.318,-0.66115,-0.67953,537.37,0.89087,-0.4536,0.024438,226.91,-0.32439,-0.5976,0.73324,289.52,#26,0.074854,-0.98391,-0.16225,152.46,0.95205,0.022113,0.30513,257.79,-0.29663,-0.17731,0.93839,255.44,#27,0.66908,-0.25314,-0.69875,185.34,0.030287,-0.93013,0.36597,291.26,-0.74257,-0.26603,-0.61467,279.17,#28,-0.078436,0.93993,-0.33223,243.23,0.46945,0.32882,0.81945,253.18,0.87947,-0.091692,-0.46704,259.36,#29,0.41786,0.28831,0.86155,180.67,-0.53032,-0.69258,0.48897,359.91,0.73767,-0.66122,-0.1365,255.32,#30,0.73159,0.67669,0.082843,198.02,-0.163,0.29161,-0.94255,320.14,-0.66197,0.67606,0.32364,297.25,#31,0.23989,-0.11902,-0.96348,175.98,0.62509,0.77828,0.059493,107.77,0.74278,-0.61653,0.2611,602.94,#32,-0.05783,0.95748,-0.28266,103.83,0.17056,-0.26949,-0.94778,304.29,-0.98365,-0.10302,-0.14772,238,#33,-0.41347,-0.024186,0.9102,156.16,0.3445,-0.92949,0.1318,328.05,0.84283,0.36806,0.39264,230.45,#34,0.042438,0.98618,-0.16015,190.21,0.90861,0.028565,0.41667,302.2,0.41548,-0.1632,-0.89484,226.21,#35,-0.28307,-0.4381,0.85319,156.7,-0.91347,-0.14798,-0.37906,326.95,0.29232,-0.88666,-0.3583,229.7
    20406 
    20407 > ui mousemode right "translate selected models"
    20408 
    20409 > view matrix models
    20410 > #24,-0.318,-0.66115,-0.67953,534.65,0.89087,-0.4536,0.024438,225.83,-0.32439,-0.5976,0.73324,288.89,#26,0.074854,-0.98391,-0.16225,149.74,0.95205,0.022113,0.30513,256.71,-0.29663,-0.17731,0.93839,254.81,#27,0.66908,-0.25314,-0.69875,182.62,0.030287,-0.93013,0.36597,290.18,-0.74257,-0.26603,-0.61467,278.55,#28,-0.078436,0.93993,-0.33223,240.51,0.46945,0.32882,0.81945,252.11,0.87947,-0.091692,-0.46704,258.73,#29,0.41786,0.28831,0.86155,177.94,-0.53032,-0.69258,0.48897,358.83,0.73767,-0.66122,-0.1365,254.7,#30,0.73159,0.67669,0.082843,195.3,-0.163,0.29161,-0.94255,319.06,-0.66197,0.67606,0.32364,296.62,#31,0.23989,-0.11902,-0.96348,173.25,0.62509,0.77828,0.059493,106.69,0.74278,-0.61653,0.2611,602.32,#32,-0.05783,0.95748,-0.28266,101.11,0.17056,-0.26949,-0.94778,303.22,-0.98365,-0.10302,-0.14772,237.38,#33,-0.41347,-0.024186,0.9102,153.44,0.3445,-0.92949,0.1318,326.97,0.84283,0.36806,0.39264,229.82,#34,0.042438,0.98618,-0.16015,187.49,0.90861,0.028565,0.41667,301.13,0.41548,-0.1632,-0.89484,225.58,#35,-0.28307,-0.4381,0.85319,153.98,-0.91347,-0.14798,-0.37906,325.87,0.29232,-0.88666,-0.3583,229.07
    20411 
    20412 > fitmap #24 inMap #25
    20413 
    20414 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20415 points 
    20416 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    20417 steps = 156, shift = 9.24, angle = 13 degrees 
    20418  
    20419 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20420 (#25) coordinates: 
    20421 Matrix rotation and translation 
    20422 -0.53654733 -0.84379164 -0.01151613 402.23913730 
    20423 0.84348563 -0.53666482 0.02286592 56.40575565 
    20424 -0.02547438 0.00255495 0.99967221 -108.72343203 
    20425 Axis -0.01203643 0.00827176 0.99989335 
    20426 Axis point 184.72256227 138.71080164 0.00000000 
    20427 Rotation angle (degrees) 122.46402662 
    20428 Shift along axis -113.08678508 
    20429  
    20430 
    20431 > fitmap #24 inMap #25
    20432 
    20433 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20434 points 
    20435 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    20436 steps = 156, shift = 9.24, angle = 13 degrees 
    20437  
    20438 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20439 (#25) coordinates: 
    20440 Matrix rotation and translation 
    20441 -0.53654733 -0.84379164 -0.01151613 402.23913730 
    20442 0.84348563 -0.53666482 0.02286592 56.40575565 
    20443 -0.02547438 0.00255495 0.99967221 -108.72343203 
    20444 Axis -0.01203643 0.00827176 0.99989335 
    20445 Axis point 184.72256227 138.71080164 0.00000000 
    20446 Rotation angle (degrees) 122.46402662 
    20447 Shift along axis -113.08678508 
    20448  
    20449 
    20450 > ui mousemode right "rotate selected models"
    20451 
    20452 > view matrix models
    20453 > #24,-0.034061,-0.79091,-0.61099,480.89,0.82668,-0.36585,0.4275,133.68,-0.56164,-0.49053,0.66629,336.22,#26,0.3589,-0.93305,-0.024816,124.1,0.76749,0.27987,0.57674,272.77,-0.53118,-0.22604,0.81655,275.99,#27,0.6179,-0.54129,-0.57027,166.65,-0.37675,-0.84044,0.38952,299.34,-0.69012,-0.025833,-0.72323,291.76,#28,0.10412,0.99173,-0.075049,208.94,0.68508,-0.016817,0.72827,241.33,0.72098,-0.12724,-0.68117,285.52,#29,0.25659,0.032874,0.96596,182.88,-0.41959,-0.89654,0.14197,357.18,0.87069,-0.44173,-0.21625,250.58,#30,0.6195,0.75767,-0.20531,188.38,-0.55139,0.23384,-0.80081,326.53,-0.55874,0.60931,0.56264,302.27,#31,0.4501,0.10904,-0.8863,111.8,0.69193,0.58482,0.42334,220.21,0.56449,-0.8038,0.18778,651.36,#32,-0.036515,0.82041,-0.57061,91.92,-0.085892,-0.57145,-0.81613,325.77,-0.99564,0.019209,0.091333,244.59,#33,-0.25427,-0.30119,0.91904,148.75,0.66572,-0.74382,-0.059587,329.16,0.70155,0.59667,0.38964,233.71,#34,0.33993,0.93894,-0.053291,172.81,0.92587,-0.32419,0.19408,293.84,0.16495,-0.11532,-0.97954,238.09,#35,-0.54454,-0.49376,0.678,148.89,-0.66854,-0.23262,-0.70636,327.79,0.50649,-0.83791,-0.20343,233.3
    20454 
    20455 > ui mousemode right "translate selected models"
    20456 
    20457 > view matrix models
    20458 > #24,-0.034061,-0.79091,-0.61099,485.46,0.82668,-0.36585,0.4275,136.38,-0.56164,-0.49053,0.66629,336.67,#26,0.3589,-0.93305,-0.024816,128.67,0.76749,0.27987,0.57674,275.48,-0.53118,-0.22604,0.81655,276.44,#27,0.6179,-0.54129,-0.57027,171.22,-0.37675,-0.84044,0.38952,302.05,-0.69012,-0.025833,-0.72323,292.22,#28,0.10412,0.99173,-0.075049,213.51,0.68508,-0.016817,0.72827,244.03,0.72098,-0.12724,-0.68117,285.97,#29,0.25659,0.032874,0.96596,187.45,-0.41959,-0.89654,0.14197,359.88,0.87069,-0.44173,-0.21625,251.03,#30,0.6195,0.75767,-0.20531,192.95,-0.55139,0.23384,-0.80081,329.24,-0.55874,0.60931,0.56264,302.72,#31,0.4501,0.10904,-0.8863,116.36,0.69193,0.58482,0.42334,222.92,0.56449,-0.8038,0.18778,651.81,#32,-0.036515,0.82041,-0.57061,96.489,-0.085892,-0.57145,-0.81613,328.47,-0.99564,0.019209,0.091333,245.04,#33,-0.25427,-0.30119,0.91904,153.32,0.66572,-0.74382,-0.059587,331.87,0.70155,0.59667,0.38964,234.16,#34,0.33993,0.93894,-0.053291,177.38,0.92587,-0.32419,0.19408,296.55,0.16495,-0.11532,-0.97954,238.54,#35,-0.54454,-0.49376,0.678,153.46,-0.66854,-0.23262,-0.70636,330.5,0.50649,-0.83791,-0.20343,233.75
    20459 
    20460 > fitmap #24 inMap #25
    20461 
    20462 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20463 points 
    20464 correlation = 0.6995, correlation about mean = 0.3478, overlap = 18.84 
    20465 steps = 144, shift = 9.38, angle = 14.3 degrees 
    20466  
    20467 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20468 (#25) coordinates: 
    20469 Matrix rotation and translation 
    20470 -0.53634514 -0.84391968 -0.01155224 402.24655069 
    20471 0.84361383 -0.53646365 0.02285743 56.32369233 
    20472 -0.02548720 0.00251385 0.99967199 -108.69945864 
    20473 Axis -0.01205393 0.00825671 0.99989326 
    20474 Axis point 184.74404153 138.70156827 0.00000000 
    20475 Rotation angle (degrees) 122.45033940 
    20476 Shift along axis -113.07146080 
    20477  
    20478 
    20479 > fitmap #24 inMap #25
    20480 
    20481 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20482 points 
    20483 correlation = 0.6995, correlation about mean = 0.3478, overlap = 18.84 
    20484 steps = 144, shift = 9.38, angle = 14.3 degrees 
    20485  
    20486 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20487 (#25) coordinates: 
    20488 Matrix rotation and translation 
    20489 -0.53634514 -0.84391968 -0.01155224 402.24655069 
    20490 0.84361383 -0.53646365 0.02285743 56.32369233 
    20491 -0.02548720 0.00251385 0.99967199 -108.69945864 
    20492 Axis -0.01205393 0.00825671 0.99989326 
    20493 Axis point 184.74404153 138.70156827 0.00000000 
    20494 Rotation angle (degrees) 122.45033940 
    20495 Shift along axis -113.07146080 
    20496  
    20497 
    20498 > fitmap #24 inMap #25
    20499 
    20500 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20501 points 
    20502 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    20503 steps = 136, shift = 9.38, angle = 14.3 degrees 
    20504  
    20505 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20506 (#25) coordinates: 
    20507 Matrix rotation and translation 
    20508 -0.53650770 -0.84381651 -0.01154089 402.24931528 
    20509 0.84350890 -0.53662568 0.02292619 56.35897325 
    20510 -0.02553863 0.00256523 0.99967054 -108.70393002 
    20511 Axis -0.01206571 0.00829493 0.99989280 
    20512 Axis point 184.73746046 138.69652445 0.00000000 
    20513 Rotation angle (degrees) 122.46140825 
    20514 Shift along axis -113.07820510 
    20515  
    20516 
    20517 > fitmap #24 inMap #25
    20518 
    20519 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20520 points 
    20521 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    20522 steps = 136, shift = 9.38, angle = 14.3 degrees 
    20523  
    20524 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20525 (#25) coordinates: 
    20526 Matrix rotation and translation 
    20527 -0.53650770 -0.84381651 -0.01154089 402.24931528 
    20528 0.84350890 -0.53662568 0.02292619 56.35897325 
    20529 -0.02553863 0.00256523 0.99967054 -108.70393002 
    20530 Axis -0.01206571 0.00829493 0.99989280 
    20531 Axis point 184.73746046 138.69652445 0.00000000 
    20532 Rotation angle (degrees) 122.46140825 
    20533 Shift along axis -113.07820510 
    20534  
    20535 
    20536 > ui mousemode right "rotate selected models"
    20537 
    20538 > view matrix models
    20539 > #24,-0.098015,-0.80866,-0.58006,496.61,0.89947,-0.3214,0.29607,140.2,-0.42585,-0.49272,0.75886,285.85,#26,0.29784,-0.95457,0.0093976,132.24,0.85319,0.2706,0.44592,271.42,-0.4282,-0.12479,0.89503,268.87,#27,0.58371,-0.51366,-0.62883,174.82,-0.24207,-0.84933,0.46908,297.11,-0.77504,-0.12158,-0.62011,285.96,#28,0.12817,0.98133,-0.14343,218.51,0.57279,0.044817,0.81848,242.54,0.80962,-0.18705,-0.55635,268.43,#29,0.32662,0.033692,0.94456,186.4,-0.53431,-0.81777,0.21393,361.11,0.77964,-0.57456,-0.24909,253.2,#30,0.59967,0.78764,-0.14151,196.27,-0.43424,0.17174,-0.88427,323.31,-0.67218,0.59172,0.44501,299.18,#31,0.46278,0.03692,-0.88571,146.19,0.61782,0.70307,0.35212,162.58,0.63571,-0.71016,0.30256,631.88,#32,-0.09852,0.83841,-0.53606,96.336,0.063201,-0.53232,-0.84418,327.11,-0.99313,-0.11705,-0.00054379,247.9,#33,-0.22989,-0.2368,0.94397,152.19,0.54129,-0.83719,-0.078192,334.52,0.8088,0.49298,0.32064,234.31,#34,0.31909,0.93965,-0.12348,177.64,0.90422,-0.26283,0.3366,300,0.28383,-0.21906,-0.93351,231.81,#35,-0.48788,-0.53939,0.68632,152.35,-0.75967,-0.12493,-0.6382,333.23,0.42998,-0.83274,-0.3488,233.69
    20540 
    20541 > fitmap #24 inMap #25
    20542 
    20543 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20544 points 
    20545 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    20546 steps = 132, shift = 8.49, angle = 13.4 degrees 
    20547  
    20548 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20549 (#25) coordinates: 
    20550 Matrix rotation and translation 
    20551 -0.53648110 -0.84383349 -0.01153520 402.24959292 
    20552 0.84352783 -0.53659914 0.02285101 56.36886561 
    20553 -0.02547223 0.00252887 0.99967233 -108.70832497 
    20554 Axis -0.01204245 0.00825878 0.99989338 
    20555 Axis point 184.73665226 138.70451360 0.00000000 
    20556 Rotation angle (degrees) 122.45954332 
    20557 Shift along axis -113.07526848 
    20558  
    20559 
    20560 > fitmap #24 inMap #25
    20561 
    20562 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20563 points 
    20564 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    20565 steps = 132, shift = 8.49, angle = 13.4 degrees 
    20566  
    20567 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20568 (#25) coordinates: 
    20569 Matrix rotation and translation 
    20570 -0.53648110 -0.84383349 -0.01153520 402.24959292 
    20571 0.84352783 -0.53659914 0.02285101 56.36886561 
    20572 -0.02547223 0.00252887 0.99967233 -108.70832497 
    20573 Axis -0.01204245 0.00825878 0.99989338 
    20574 Axis point 184.73665226 138.70451360 0.00000000 
    20575 Rotation angle (degrees) 122.45954332 
    20576 Shift along axis -113.07526848 
    20577  
    20578 
    20579 > ui mousemode right "translate selected models"
    20580 
    20581 > view matrix models
    20582 > #24,-0.098015,-0.80866,-0.58006,495.95,0.89947,-0.3214,0.29607,143.51,-0.42585,-0.49272,0.75886,283.31,#26,0.29784,-0.95457,0.0093976,131.58,0.85319,0.2706,0.44592,274.73,-0.4282,-0.12479,0.89503,266.33,#27,0.58371,-0.51366,-0.62883,174.16,-0.24207,-0.84933,0.46908,300.42,-0.77504,-0.12158,-0.62011,283.42,#28,0.12817,0.98133,-0.14343,217.85,0.57279,0.044817,0.81848,245.85,0.80962,-0.18705,-0.55635,265.9,#29,0.32662,0.033692,0.94456,185.74,-0.53431,-0.81777,0.21393,364.42,0.77964,-0.57456,-0.24909,250.66,#30,0.59967,0.78764,-0.14151,195.61,-0.43424,0.17174,-0.88427,326.62,-0.67218,0.59172,0.44501,296.64,#31,0.46278,0.03692,-0.88571,145.53,0.61782,0.70307,0.35212,165.89,0.63571,-0.71016,0.30256,629.35,#32,-0.09852,0.83841,-0.53606,95.675,0.063201,-0.53232,-0.84418,330.42,-0.99313,-0.11705,-0.00054379,245.36,#33,-0.22989,-0.2368,0.94397,151.53,0.54129,-0.83719,-0.078192,337.83,0.8088,0.49298,0.32064,231.77,#34,0.31909,0.93965,-0.12348,176.98,0.90422,-0.26283,0.3366,303.31,0.28383,-0.21906,-0.93351,229.27,#35,-0.48788,-0.53939,0.68632,151.69,-0.75967,-0.12493,-0.6382,336.54,0.42998,-0.83274,-0.3488,231.15
    20583 
    20584 > fitmap #24 inMap #25
    20585 
    20586 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20587 points 
    20588 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    20589 steps = 132, shift = 4.59, angle = 13.4 degrees 
    20590  
    20591 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20592 (#25) coordinates: 
    20593 Matrix rotation and translation 
    20594 -0.53645819 -0.84384808 -0.01153365 402.24487372 
    20595 0.84354345 -0.53657630 0.02281051 56.39512313 
    20596 -0.02543729 0.00250775 0.99967327 -108.72632673 
    20597 Axis -0.01203076 0.00823885 0.99989369 
    20598 Axis point 184.72768613 138.71922847 0.00000000 
    20599 Rotation angle (degrees) 122.45795837 
    20600 Shift along axis -113.08944854 
    20601  
    20602 
    20603 > fitmap #24 inMap #25
    20604 
    20605 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20606 points 
    20607 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    20608 steps = 132, shift = 4.59, angle = 13.4 degrees 
    20609  
    20610 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20611 (#25) coordinates: 
    20612 Matrix rotation and translation 
    20613 -0.53645819 -0.84384808 -0.01153365 402.24487372 
    20614 0.84354345 -0.53657630 0.02281051 56.39512313 
    20615 -0.02543729 0.00250775 0.99967327 -108.72632673 
    20616 Axis -0.01203076 0.00823885 0.99989369 
    20617 Axis point 184.72768613 138.71922847 0.00000000 
    20618 Rotation angle (degrees) 122.45795837 
    20619 Shift along axis -113.08944854 
    20620  
    20621 
    20622 > fitmap #24 inMap #25
    20623 
    20624 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20625 points 
    20626 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    20627 steps = 132, shift = 4.59, angle = 13.4 degrees 
    20628  
    20629 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20630 (#25) coordinates: 
    20631 Matrix rotation and translation 
    20632 -0.53645819 -0.84384808 -0.01153365 402.24487372 
    20633 0.84354345 -0.53657630 0.02281051 56.39512313 
    20634 -0.02543729 0.00250775 0.99967327 -108.72632673 
    20635 Axis -0.01203076 0.00823885 0.99989369 
    20636 Axis point 184.72768613 138.71922847 0.00000000 
    20637 Rotation angle (degrees) 122.45795837 
    20638 Shift along axis -113.08944854 
    20639  
    20640 
    20641 > ui mousemode right "rotate selected models"
    20642 
    20643 > view matrix models
    20644 > #24,-0.11006,-0.73831,-0.66542,503.64,0.9284,-0.31542,0.19642,157.85,-0.35491,-0.59615,0.72017,296.32,#26,0.28628,-0.95278,-0.10125,135.42,0.90243,0.23262,0.36263,271.63,-0.32196,-0.19519,0.92642,254.61,#27,0.6674,-0.44915,-0.594,174.62,-0.14106,-0.85945,0.49137,297.77,-0.73122,-0.24415,-0.63695,277.97,#28,0.017389,0.99026,-0.13813,222.89,0.50254,0.11078,0.85743,247.28,0.86438,-0.084325,-0.49572,260.25,#29,0.28244,0.13568,0.94964,185.46,-0.58591,-0.75944,0.28277,364.98,0.75956,-0.63627,-0.135,252.11,#30,0.68485,0.71688,-0.13068,193.15,-0.34074,0.15652,-0.92704,323.7,-0.64411,0.6794,0.35146,295.44,#31,0.36369,0.062382,-0.92943,121.44,0.57991,0.76567,0.27831,131.09,0.729,-0.6402,0.24229,606.56,#32,-0.0079636,0.87551,-0.48313,98.447,0.14818,-0.47677,-0.86645,327.13,-0.98893,-0.07849,-0.12594,235.02,#33,-0.33653,-0.23267,0.91248,154.8,0.45333,-0.88935,-0.059584,338.54,0.82537,0.3936,0.40477,227.72,#34,0.23725,0.96992,-0.054447,182.36,0.88954,-0.19438,0.41344,305.71,0.39042,-0.14652,-0.9089,224.81,#35,-0.4808,-0.45018,0.75244,155.1,-0.8191,-0.075618,-0.56864,337.32,0.31289,-0.88973,-0.33239,227.01
    20645 
    20646 > fitmap #24 inMap #25
    20647 
    20648 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20649 points 
    20650 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    20651 steps = 124, shift = 4.61, angle = 10.3 degrees 
    20652  
    20653 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20654 (#25) coordinates: 
    20655 Matrix rotation and translation 
    20656 -0.53650604 -0.84381756 -0.01154095 402.24895802 
    20657 0.84351159 -0.53662418 0.02286203 56.37899591 
    20658 -0.02548454 0.00253069 0.99967201 -108.71380566 
    20659 Axis -0.01204813 0.00826282 0.99989328 
    20660 Axis point 184.73362348 138.70556850 0.00000000 
    20661 Rotation angle (degrees) 122.46125127 
    20662 Shift along axis -113.08270294 
    20663  
    20664 
    20665 > fitmap #24 inMap #25
    20666 
    20667 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20668 points 
    20669 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    20670 steps = 124, shift = 4.61, angle = 10.3 degrees 
    20671  
    20672 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20673 (#25) coordinates: 
    20674 Matrix rotation and translation 
    20675 -0.53650604 -0.84381756 -0.01154095 402.24895802 
    20676 0.84351159 -0.53662418 0.02286203 56.37899591 
    20677 -0.02548454 0.00253069 0.99967201 -108.71380566 
    20678 Axis -0.01204813 0.00826282 0.99989328 
    20679 Axis point 184.73362348 138.70556850 0.00000000 
    20680 Rotation angle (degrees) 122.46125127 
    20681 Shift along axis -113.08270294 
    20682  
    20683 
    20684 > fitmap #24 inMap #25
    20685 
    20686 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20687 points 
    20688 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    20689 steps = 124, shift = 4.61, angle = 10.3 degrees 
    20690  
    20691 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20692 (#25) coordinates: 
    20693 Matrix rotation and translation 
    20694 -0.53650604 -0.84381756 -0.01154095 402.24895802 
    20695 0.84351159 -0.53662418 0.02286203 56.37899591 
    20696 -0.02548454 0.00253069 0.99967201 -108.71380566 
    20697 Axis -0.01204813 0.00826282 0.99989328 
    20698 Axis point 184.73362348 138.70556850 0.00000000 
    20699 Rotation angle (degrees) 122.46125127 
    20700 Shift along axis -113.08270294 
    20701  
    20702 
    20703 > ui mousemode right "rotate selected models"
    20704 
    20705 > view matrix models
    20706 > #24,-0.11762,-0.74001,-0.66223,504.98,0.93224,-0.31207,0.18315,159.26,-0.3422,-0.59582,0.72657,291.96,#26,0.27906,-0.95528,-0.097826,135.86,0.9082,0.22946,0.35003,271.38,-0.31193,-0.18652,0.93162,253.9,#27,0.66383,-0.44556,-0.60067,175.04,-0.12764,-0.85888,0.49602,297.44,-0.73691,-0.25261,-0.62702,277.36,#28,0.019617,0.98907,-0.14612,223.51,0.49143,0.11773,0.86293,247.48,0.8707,-0.088732,-0.48375,258.71,#29,0.29041,0.13632,0.94714,185.34,-0.59398,-0.75034,0.29012,365.05,0.75023,-0.64684,-0.13693,252.32,#30,0.68296,0.72,-0.12314,193.53,-0.32832,0.15199,-0.93226,323.26,-0.65251,0.67713,0.34019,295.06,#31,0.36464,0.054063,-0.92958,124.81,0.5726,0.77423,0.26964,126.22,0.73428,-0.63059,0.25136,604.08,#32,-0.014749,0.87781,-0.47879,98.446,0.16089,-0.47052,-0.8676,326.91,-0.98686,-0.089829,-0.13429,235.25,#33,-0.33423,-0.2251,0.91522,154.69,0.44063,-0.89572,-0.059389,338.74,0.83315,0.38342,0.39856,227.76,#34,0.23437,0.97015,-0.062306,182.42,0.88582,-0.18672,0.42481,306.12,0.4005,-0.15476,-0.90314,224.27,#35,-0.47411,-0.45504,0.75376,154.99,-0.82592,-0.066791,-0.55982,337.54,0.30509,-0.88796,-0.34416,227.04
    20707 
    20708 > view matrix models
    20709 > #24,-0.087024,-0.76284,-0.64071,497.81,0.92608,-0.29899,0.23019,147.64,-0.36716,-0.57331,0.73246,291.85,#26,0.30889,-0.94878,-0.066387,132.77,0.88702,0.26219,0.38007,273.35,-0.3432,-0.17629,0.92257,257.03,#27,0.64431,-0.48387,-0.59223,173.38,-0.17511,-0.84716,0.50165,298.47,-0.74445,-0.21952,-0.63056,279.03,#28,0.055396,0.99112,-0.12089,219.47,0.51485,0.075387,0.85396,246.09,0.85549,-0.10955,-0.5061,261,#29,0.2807,0.094343,0.95515,185.88,-0.58354,-0.77333,0.24787,364.87,0.76203,-0.62694,-0.16202,251.85,#30,0.65706,0.73803,-0.15354,193.21,-0.37391,0.14221,-0.9165,324.02,-0.65457,0.65961,0.3694,295.64,#31,0.40074,0.072825,-0.91329,122.56,0.57819,0.75316,0.31376,138.78,0.7107,-0.6538,0.25971,611.44,#32,-0.02689,0.85665,-0.5152,97.237,0.13317,-0.50772,-0.85117,329.77,-0.99073,-0.091498,-0.10043,237.43,#33,-0.30083,-0.25315,0.91947,153.75,0.47724,-0.87469,-0.084676,339.13,0.82568,0.41333,0.38394,228.61,#34,0.27673,0.95892,-0.062381,180.1,0.88675,-0.22981,0.40107,305.33,0.37025,-0.1663,-0.91392,225.58,#35,-0.50063,-0.47392,0.72441,153.99,-0.79721,-0.073754,-0.59919,337.89,0.33739,-0.87747,-0.34089,227.92
    20710 
    20711 > view matrix models
    20712 > #24,-0.065451,-0.65849,-0.74974,496.39,0.8672,-0.40923,0.28372,170.97,-0.49364,-0.6316,0.59783,361.87,#26,0.32374,-0.92125,-0.21559,136.16,0.85322,0.18579,0.48734,271.15,-0.40891,-0.34172,0.84618,259.54,#27,0.75306,-0.41508,-0.51049,172.15,-0.23043,-0.89313,0.38628,301,-0.61628,-0.17326,-0.76823,283.6,#28,-0.090217,0.99303,-0.0758,222.26,0.61924,0.11554,0.77666,249.4,0.78,0.02313,-0.62535,279.28,#29,0.18615,0.21387,0.95896,186.09,-0.46822,-0.83876,0.27795,364.11,0.86378,-0.50074,-0.055999,250.02,#30,0.75962,0.62693,-0.173,188.36,-0.41555,0.26325,-0.87064,329.47,-0.5003,0.73325,0.46049,299.37,#31,0.27018,0.14113,-0.95241,78.647,0.68301,0.66911,0.29291,181.23,0.6786,-0.72964,0.08439,623.44,#32,0.11482,0.87864,-0.46347,101.89,0.0075881,-0.46732,-0.88406,322.67,-0.99336,0.09799,-0.060325,227.9,#33,-0.43654,-0.27945,0.85519,158.71,0.55871,-0.82924,0.014229,333.95,0.70518,0.48401,0.51812,226.03,#34,0.18666,0.98067,0.058675,186.43,0.93968,-0.19565,0.28058,301.53,0.28664,0.0027619,-0.95804,231.21,#35,-0.51566,-0.33622,0.78807,159.09,-0.77549,-0.20793,-0.59614,332.65,0.3643,-0.91854,-0.15351,225.55
    20713 
    20714 > fitmap #24 inMap #25
    20715 
    20716 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20717 points 
    20718 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    20719 steps = 84, shift = 5.85, angle = 5.5 degrees 
    20720  
    20721 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20722 (#25) coordinates: 
    20723 Matrix rotation and translation 
    20724 -0.53650540 -0.84381796 -0.01154137 402.25060611 
    20725 0.84351214 -0.53662357 0.02285614 56.38038132 
    20726 -0.02547979 0.00252715 0.99967214 -108.71183289 
    20727 Axis -0.01204673 0.00825976 0.99989332 
    20728 Axis point 184.73424112 138.70669247 0.00000000 
    20729 Rotation angle (degrees) 122.46120430 
    20730 Shift along axis -113.08035258 
    20731  
    20732 
    20733 > fitmap #24 inMap #25
    20734 
    20735 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20736 points 
    20737 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    20738 steps = 84, shift = 5.85, angle = 5.5 degrees 
    20739  
    20740 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20741 (#25) coordinates: 
    20742 Matrix rotation and translation 
    20743 -0.53650540 -0.84381796 -0.01154137 402.25060611 
    20744 0.84351214 -0.53662357 0.02285614 56.38038132 
    20745 -0.02547979 0.00252715 0.99967214 -108.71183289 
    20746 Axis -0.01204673 0.00825976 0.99989332 
    20747 Axis point 184.73424112 138.70669247 0.00000000 
    20748 Rotation angle (degrees) 122.46120430 
    20749 Shift along axis -113.08035258 
    20750  
    20751 
    20752 > fitmap #24 inMap #25
    20753 
    20754 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20755 points 
    20756 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    20757 steps = 84, shift = 5.85, angle = 5.5 degrees 
    20758  
    20759 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20760 (#25) coordinates: 
    20761 Matrix rotation and translation 
    20762 -0.53650540 -0.84381796 -0.01154137 402.25060611 
    20763 0.84351214 -0.53662357 0.02285614 56.38038132 
    20764 -0.02547979 0.00252715 0.99967214 -108.71183289 
    20765 Axis -0.01204673 0.00825976 0.99989332 
    20766 Axis point 184.73424112 138.70669247 0.00000000 
    20767 Rotation angle (degrees) 122.46120430 
    20768 Shift along axis -113.08035258 
    20769  
    20770 
    20771 > view matrix models
    20772 > #24,-0.072731,-0.72339,-0.6866,496.92,0.89048,-0.35714,0.28195,155.76,-0.44917,-0.5909,0.67014,327.71,#26,0.3213,-0.9385,-0.12644,133.58,0.85925,0.23279,0.45552,272.86,-0.39807,-0.25501,0.8812,260.32,#27,0.69042,-0.46171,-0.5569,172.53,-0.22803,-0.86949,0.43818,300.33,-0.68653,-0.17554,-0.7056,282.52,#28,-0.0020009,0.99525,-0.097335,220.12,0.58589,0.080046,0.80643,247.28,0.81039,-0.055414,-0.58327,271.82,#29,0.23863,0.13976,0.961,186.06,-0.51313,-0.82201,0.24696,364.37,0.82447,-0.55205,-0.12444,250.59,#30,0.69944,0.69476,-0.1676,191.06,-0.41834,0.20787,-0.88419,327.47,-0.57946,0.68855,0.43603,298.06,#31,0.351,0.10601,-0.93036,102.83,0.64173,0.69631,0.32145,168.53,0.68189,-0.70987,0.17637,623.62,#32,0.032855,0.86525,-0.50026,98.804,0.048761,-0.50132,-0.86389,326.92,-0.99827,0.0039902,-0.058661,233.88,#33,-0.35536,-0.27009,0.89486,155.67,0.54081,-0.84025,-0.038842,336.3,0.76239,0.47014,0.44466,227.73,#34,0.24535,0.96939,-0.0097327,182.46,0.91868,-0.22928,0.32164,302.75,0.30956,-0.087855,-0.94681,229.18,#35,-0.51313,-0.41838,0.74943,155.96,-0.77299,-0.15425,-0.61537,335.01,0.37306,-0.89508,-0.24426,227.16
    20773 
    20774 > view matrix models
    20775 > #24,-0.088031,-0.70512,-0.7036,500.53,0.89357,-0.36806,0.25705,162.75,-0.44022,-0.60609,0.66247,330.39,#26,0.30583,-0.94,-0.15125,135.45,0.87151,0.21243,0.44198,271.58,-0.38333,-0.26698,0.88418,258.66,#27,0.70633,-0.43714,-0.55678,173.37,-0.20286,-0.87855,0.43242,299.75,-0.67819,-0.19248,-0.70923,281.77,#28,-0.029027,0.99368,-0.10847,222.42,0.5762,0.10531,0.81049,248.02,0.81679,-0.038977,-0.57562,271.23,#29,0.2387,0.16866,0.95634,185.79,-0.51661,-0.81183,0.27212,364.47,0.82227,-0.55901,-0.10665,250.78,#30,0.71845,0.67873,-0.15215,190.97,-0.39412,0.21699,-0.89307,327.15,-0.57314,0.7016,0.4234,297.91,#31,0.3244,0.099468,-0.94068,101.75,0.64226,0.70693,0.29624,162.3,0.69446,-0.70026,0.16544,620.24,#32,0.046915,0.87732,-0.4776,99.752,0.061159,-0.47975,-0.87527,325.06,-0.99702,0.011854,-0.076164,232.29,#33,-0.38038,-0.25622,0.88863,156.45,0.52294,-0.85209,-0.021834,335.92,0.76279,0.4564,0.4581,227.14,#34,0.21758,0.97604,-0.0032491,184.05,0.92082,-0.20417,0.33228,303.03,0.32366,-0.075292,-0.94317,228.63,#35,-0.49934,-0.40065,0.7682,156.78,-0.78975,-0.15415,-0.59374,334.65,0.3563,-0.90317,-0.23944,226.55
    20776 
    20777 > view matrix models
    20778 > #24,-0.084825,-0.6944,-0.71457,500.11,0.8491,-0.42564,0.31283,171.88,-0.52138,-0.5802,0.62572,351.78,#26,0.30821,-0.93666,-0.16637,135.74,0.83441,0.18217,0.52017,271.77,-0.45691,-0.29914,0.8377,265.01,#27,0.71733,-0.43074,-0.54764,173.19,-0.2603,-0.89477,0.36282,302.13,-0.64629,-0.11772,-0.75396,286.01,#28,-0.043661,0.99373,-0.10289,222.6,0.64831,0.10654,0.75389,249.92,0.76012,-0.033788,-0.6489,280.97,#29,0.22821,0.18028,0.95678,185.82,-0.438,-0.85864,0.26626,363.82,0.86953,-0.47983,-0.11699,249.41,#30,0.7286,0.66716,-0.15507,190.44,-0.44108,0.28381,-0.85141,330.99,-0.52401,0.68873,0.50105,299.83,#31,0.31132,0.10732,-0.94423,96.984,0.70477,0.64045,0.30516,195.83,0.63748,-0.76046,0.12375,634.54,#32,0.061797,0.87891,-0.47297,100.24,-0.030012,-0.47203,-0.88107,322.43,-0.99764,0.068642,-0.0027922,233.34,#33,-0.39394,-0.25979,0.88166,156.96,0.58849,-0.80813,0.024826,333.07,0.70604,0.52862,0.47123,228.05,#34,0.20906,0.97785,0.0097648,184.66,0.94769,-0.20505,0.24463,300.6,0.24122,-0.041889,-0.96957,232.95,#35,-0.50161,-0.3863,0.77406,157.31,-0.75648,-0.23819,-0.60909,331.75,0.41967,-0.89109,-0.17275,227.59
    20779 
    20780 > fitmap #24 inMap #25
    20781 
    20782 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20783 points 
    20784 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    20785 steps = 84, shift = 5.82, angle = 5.72 degrees 
    20786  
    20787 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20788 (#25) coordinates: 
    20789 Matrix rotation and translation 
    20790 -0.53648914 -0.84382819 -0.01154928 402.25077995 
    20791 0.84352286 -0.53660757 0.02283615 56.38489869 
    20792 -0.02546722 0.00250926 0.99967251 -108.71256506 
    20793 Axis -0.01204534 0.00824751 0.99989344 
    20794 Axis point 184.73317849 138.71088501 0.00000000 
    20795 Rotation angle (degrees) 122.46009692 
    20796 Shift along axis -113.08119373 
    20797  
    20798 
    20799 > fitmap #24 inMap #25
    20800 
    20801 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20802 points 
    20803 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    20804 steps = 84, shift = 5.82, angle = 5.72 degrees 
    20805  
    20806 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20807 (#25) coordinates: 
    20808 Matrix rotation and translation 
    20809 -0.53648914 -0.84382819 -0.01154928 402.25077995 
    20810 0.84352286 -0.53660757 0.02283615 56.38489869 
    20811 -0.02546722 0.00250926 0.99967251 -108.71256506 
    20812 Axis -0.01204534 0.00824751 0.99989344 
    20813 Axis point 184.73317849 138.71088501 0.00000000 
    20814 Rotation angle (degrees) 122.46009692 
    20815 Shift along axis -113.08119373 
    20816  
    20817 
    20818 > fitmap #24 inMap #25
    20819 
    20820 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20821 points 
    20822 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    20823 steps = 84, shift = 5.82, angle = 5.72 degrees 
    20824  
    20825 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20826 (#25) coordinates: 
    20827 Matrix rotation and translation 
    20828 -0.53648914 -0.84382819 -0.01154928 402.25077995 
    20829 0.84352286 -0.53660757 0.02283615 56.38489869 
    20830 -0.02546722 0.00250926 0.99967251 -108.71256506 
    20831 Axis -0.01204534 0.00824751 0.99989344 
    20832 Axis point 184.73317849 138.71088501 0.00000000 
    20833 Rotation angle (degrees) 122.46009692 
    20834 Shift along axis -113.08119373 
    20835  
    20836 
    20837 > fitmap #24 inMap #25
    20838 
    20839 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20840 points 
    20841 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    20842 steps = 84, shift = 5.82, angle = 5.72 degrees 
    20843  
    20844 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20845 (#25) coordinates: 
    20846 Matrix rotation and translation 
    20847 -0.53648914 -0.84382819 -0.01154928 402.25077995 
    20848 0.84352286 -0.53660757 0.02283615 56.38489869 
    20849 -0.02546722 0.00250926 0.99967251 -108.71256506 
    20850 Axis -0.01204534 0.00824751 0.99989344 
    20851 Axis point 184.73317849 138.71088501 0.00000000 
    20852 Rotation angle (degrees) 122.46009692 
    20853 Shift along axis -113.08119373 
    20854  
    20855 
    20856 > fitmap #24 inMap #25
    20857 
    20858 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20859 points 
    20860 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    20861 steps = 84, shift = 5.82, angle = 5.72 degrees 
    20862  
    20863 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20864 (#25) coordinates: 
    20865 Matrix rotation and translation 
    20866 -0.53648914 -0.84382819 -0.01154928 402.25077995 
    20867 0.84352286 -0.53660757 0.02283615 56.38489869 
    20868 -0.02546722 0.00250926 0.99967251 -108.71256506 
    20869 Axis -0.01204534 0.00824751 0.99989344 
    20870 Axis point 184.73317849 138.71088501 0.00000000 
    20871 Rotation angle (degrees) 122.46009692 
    20872 Shift along axis -113.08119373 
    20873  
    20874 
    20875 > view matrix models
    20876 > #24,-0.0884,-0.65051,-0.75434,501.02,0.86741,-0.42256,0.26275,178.21,-0.48967,-0.63109,0.60162,360.03,#26,0.30132,-0.92673,-0.22446,138.09,0.86261,0.16461,0.47834,269.97,-0.40634,-0.33775,0.84901,259.37,#27,0.75629,-0.39371,-0.52251,173.42,-0.20932,-0.90229,0.37691,300.6,-0.61985,-0.17568,-0.7648,283.44,#28,-0.10258,0.98998,-0.096996,224.77,0.61354,0.13972,0.7772,250.26,0.78297,0.020217,-0.62173,278.73,#29,0.20061,0.23256,0.95167,185.7,-0.46716,-0.83115,0.30158,364.16,0.86111,-0.50508,-0.058093,250.08,#30,0.76779,0.62289,-0.15001,188.99,-0.39471,0.27542,-0.87656,329.38,-0.50469,0.73222,0.45733,299.27,#31,0.25579,0.12213,-0.95899,84.082,0.68655,0.67544,0.26914,177.13,0.68061,-0.72723,0.08892,623.08,#32,0.11108,0.89015,-0.44191,102.46,0.014591,-0.44608,-0.89488,320.77,-0.9937,0.092959,-0.06254,228.07,#33,-0.44758,-0.25736,0.85641,158.98,0.54487,-0.83787,0.032978,333.44,0.70908,0.48139,0.51524,226.06,#34,0.16462,0.98517,0.048402,187.5,0.94275,-0.17159,0.28598,301.7,0.29004,-0.0014478,-0.95701,231,#35,-0.49523,-0.33427,0.80188,159.39,-0.78941,-0.21222,-0.57601,332.16,0.36272,-0.91827,-0.15878,225.56
    20877 
    20878 > view matrix models
    20879 > #24,-0.10425,-0.66336,-0.741,504.21,0.87838,-0.41085,0.24422,177.51,-0.46645,-0.62542,0.62552,348.35,#26,0.28737,-0.93532,-0.20641,138.54,0.87369,0.16765,0.45669,269.69,-0.39254,-0.31157,0.86535,258.58,#27,0.74226,-0.39345,-0.54245,174.28,-0.19037,-0.89994,0.39226,299.92,-0.6425,-0.1879,-0.74289,282.53,#28,-0.086797,0.9895,-0.11557,225.75,0.59409,0.14453,0.79131,249.99,0.7997,2.684e-05,-0.6004,275.39,#29,0.22338,0.22442,0.94855,185.46,-0.48653,-0.81757,0.30801,364.33,0.84463,-0.53029,-0.073439,250.43,#30,0.7574,0.63888,-0.13482,190.08,-0.37839,0.26119,-0.88803,328.4,-0.53214,0.72361,0.43957,298.68,#31,0.26867,0.10146,-0.95787,93.681,0.67145,0.69328,0.26177,167.89,0.69063,-0.71349,0.11814,621.14,#32,0.087235,0.89426,-0.43897,101.92,0.038941,-0.44337,-0.89549,321.04,-0.99543,0.061025,-0.0735,229.37,#33,-0.43313,-0.24174,0.86831,158.31,0.52534,-0.85051,0.025262,334.05,0.7324,0.4671,0.49538,226.32,#34,0.16697,0.98567,0.024141,187.1,0.93642,-0.16619,0.30903,302.35,0.30861,-0.028992,-0.95075,229.82,#35,-0.48262,-0.3551,0.80062,158.72,-0.80052,-0.19201,-0.56772,332.78,0.35532,-0.9149,-0.19159,225.78
    20880 
    20881 > ui mousemode right "translate selected models"
    20882 
    20883 > view matrix models
    20884 > #24,-0.10425,-0.66336,-0.741,503.09,0.87838,-0.41085,0.24422,177.35,-0.46645,-0.62542,0.62552,349.53,#26,0.28737,-0.93532,-0.20641,137.42,0.87369,0.16765,0.45669,269.53,-0.39254,-0.31157,0.86535,259.76,#27,0.74226,-0.39345,-0.54245,173.16,-0.19037,-0.89994,0.39226,299.76,-0.6425,-0.1879,-0.74289,283.71,#28,-0.086797,0.9895,-0.11557,224.63,0.59409,0.14453,0.79131,249.83,0.7997,2.684e-05,-0.6004,276.57,#29,0.22338,0.22442,0.94855,184.33,-0.48653,-0.81757,0.30801,364.17,0.84463,-0.53029,-0.073439,251.61,#30,0.7574,0.63888,-0.13482,188.96,-0.37839,0.26119,-0.88803,328.24,-0.53214,0.72361,0.43957,299.86,#31,0.26867,0.10146,-0.95787,92.56,0.67145,0.69328,0.26177,167.73,0.69063,-0.71349,0.11814,622.32,#32,0.087235,0.89426,-0.43897,100.8,0.038941,-0.44337,-0.89549,320.88,-0.99543,0.061025,-0.0735,230.55,#33,-0.43313,-0.24174,0.86831,157.19,0.52534,-0.85051,0.025262,333.9,0.7324,0.4671,0.49538,227.5,#34,0.16697,0.98567,0.024141,185.98,0.93642,-0.16619,0.30903,302.19,0.30861,-0.028992,-0.95075,231,#35,-0.48262,-0.3551,0.80062,157.6,-0.80052,-0.19201,-0.56772,332.62,0.35532,-0.9149,-0.19159,226.96
    20885 
    20886 > fitmap #24 inMap #25
    20887 
    20888 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20889 points 
    20890 correlation = 0.6996, correlation about mean = 0.348, overlap = 18.84 
    20891 steps = 68, shift = 5.69, angle = 3.52 degrees 
    20892  
    20893 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20894 (#25) coordinates: 
    20895 Matrix rotation and translation 
    20896 -0.53640743 -0.84387973 -0.01157876 402.25402221 
    20897 0.84357694 -0.53652689 0.02273415 56.39638517 
    20898 -0.02539720 0.00242719 0.99967449 -108.72602321 
    20899 Axis -0.01203279 0.00818805 0.99989408 
    20900 Axis point 184.73226063 138.72732910 0.00000000 
    20901 Rotation angle (degrees) 122.45451567 
    20902 Shift along axis -113.09296706 
    20903  
    20904 
    20905 > fitmap #24 inMap #25
    20906 
    20907 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20908 points 
    20909 correlation = 0.6996, correlation about mean = 0.348, overlap = 18.84 
    20910 steps = 68, shift = 5.69, angle = 3.52 degrees 
    20911  
    20912 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20913 (#25) coordinates: 
    20914 Matrix rotation and translation 
    20915 -0.53640743 -0.84387973 -0.01157876 402.25402221 
    20916 0.84357694 -0.53652689 0.02273415 56.39638517 
    20917 -0.02539720 0.00242719 0.99967449 -108.72602321 
    20918 Axis -0.01203279 0.00818805 0.99989408 
    20919 Axis point 184.73226063 138.72732910 0.00000000 
    20920 Rotation angle (degrees) 122.45451567 
    20921 Shift along axis -113.09296706 
    20922  
    20923 
    20924 > fitmap #24 inMap #25
    20925 
    20926 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20927 points 
    20928 correlation = 0.6996, correlation about mean = 0.348, overlap = 18.84 
    20929 steps = 68, shift = 5.69, angle = 3.52 degrees 
    20930  
    20931 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20932 (#25) coordinates: 
    20933 Matrix rotation and translation 
    20934 -0.53640743 -0.84387973 -0.01157876 402.25402221 
    20935 0.84357694 -0.53652689 0.02273415 56.39638517 
    20936 -0.02539720 0.00242719 0.99967449 -108.72602321 
    20937 Axis -0.01203279 0.00818805 0.99989408 
    20938 Axis point 184.73226063 138.72732910 0.00000000 
    20939 Rotation angle (degrees) 122.45451567 
    20940 Shift along axis -113.09296706 
    20941  
    20942 
    20943 > fitmap #24 inMap #25
    20944 
    20945 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20946 points 
    20947 correlation = 0.6996, correlation about mean = 0.348, overlap = 18.84 
    20948 steps = 68, shift = 5.69, angle = 3.52 degrees 
    20949  
    20950 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20951 (#25) coordinates: 
    20952 Matrix rotation and translation 
    20953 -0.53640743 -0.84387973 -0.01157876 402.25402221 
    20954 0.84357694 -0.53652689 0.02273415 56.39638517 
    20955 -0.02539720 0.00242719 0.99967449 -108.72602321 
    20956 Axis -0.01203279 0.00818805 0.99989408 
    20957 Axis point 184.73226063 138.72732910 0.00000000 
    20958 Rotation angle (degrees) 122.45451567 
    20959 Shift along axis -113.09296706 
    20960  
    20961 
    20962 > fitmap #24 inMap #25
    20963 
    20964 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20965 points 
    20966 correlation = 0.6996, correlation about mean = 0.348, overlap = 18.84 
    20967 steps = 68, shift = 5.69, angle = 3.52 degrees 
    20968  
    20969 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20970 (#25) coordinates: 
    20971 Matrix rotation and translation 
    20972 -0.53640743 -0.84387973 -0.01157876 402.25402221 
    20973 0.84357694 -0.53652689 0.02273415 56.39638517 
    20974 -0.02539720 0.00242719 0.99967449 -108.72602321 
    20975 Axis -0.01203279 0.00818805 0.99989408 
    20976 Axis point 184.73226063 138.72732910 0.00000000 
    20977 Rotation angle (degrees) 122.45451567 
    20978 Shift along axis -113.09296706 
    20979  
    20980 
    20981 > fitmap #24 inMap #25
    20982 
    20983 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    20984 points 
    20985 correlation = 0.6996, correlation about mean = 0.348, overlap = 18.84 
    20986 steps = 68, shift = 5.69, angle = 3.52 degrees 
    20987  
    20988 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    20989 (#25) coordinates: 
    20990 Matrix rotation and translation 
    20991 -0.53640743 -0.84387973 -0.01157876 402.25402221 
    20992 0.84357694 -0.53652689 0.02273415 56.39638517 
    20993 -0.02539720 0.00242719 0.99967449 -108.72602321 
    20994 Axis -0.01203279 0.00818805 0.99989408 
    20995 Axis point 184.73226063 138.72732910 0.00000000 
    20996 Rotation angle (degrees) 122.45451567 
    20997 Shift along axis -113.09296706 
    20998  
    20999 
    21000 > ui mousemode right "rotate selected models"
    21001 
    21002 > view matrix models
    21003 > #24,-0.091059,-0.67112,-0.73573,500.47,0.87121,-0.41156,0.2676,173.94,-0.48239,-0.61661,0.62217,352.14,#26,0.30058,-0.93312,-0.19732,136.15,0.86157,0.17692,0.47581,270.33,-0.40908,-0.31302,0.85713,261.31,#27,0.73782,-0.40823,-0.53756,172.42,-0.21409,-0.8968,0.3872,300.41,-0.64014,-0.1706,-0.74907,284.63,#28,-0.075647,0.99169,-0.10404,223.06,0.61003,0.12856,0.78188,249.53,0.78876,-0.0043199,-0.61469,278.33,#29,0.21722,0.2102,0.95322,184.57,-0.47442,-0.8307,0.29129,364.03,0.85308,-0.51551,-0.080719,251.32,#30,0.75016,0.64444,-0.14819,188.71,-0.40026,0.26415,-0.8775,328.93,-0.52635,0.71758,0.4561,300.23,#31,0.2808,0.11116,-0.95331,90.388,0.67964,0.6783,0.27928,175.96,0.67767,-0.72633,0.11492,625.75,#32,0.085863,0.88714,-0.45344,100.3,0.019196,-0.45651,-0.88951,321.71,-0.99612,0.067671,-0.056227,231.21,#33,-0.42317,-0.25444,0.86959,156.89,0.54564,-0.83777,0.020399,333.76,0.72333,0.48312,0.49335,227.82,#34,0.1826,0.98281,0.027205,185.17,0.93913,-0.18254,0.29104,301.67,0.29101,-0.027596,-0.95632,231.86,#35,-0.49471,-0.35996,0.79101,157.28,-0.78597,-0.20308,-0.58397,332.47,0.37084,-0.9106,-0.18245,227.31
    21004 
    21005 > ui mousemode right "translate selected models"
    21006 
    21007 > view matrix models
    21008 > #24,-0.091059,-0.67112,-0.73573,497.46,0.87121,-0.41156,0.2676,171.48,-0.48239,-0.61661,0.62217,352.28,#26,0.30058,-0.93312,-0.19732,133.14,0.86157,0.17692,0.47581,267.87,-0.40908,-0.31302,0.85713,261.45,#27,0.73782,-0.40823,-0.53756,169.41,-0.21409,-0.8968,0.3872,297.95,-0.64014,-0.1706,-0.74907,284.77,#28,-0.075647,0.99169,-0.10404,220.05,0.61003,0.12856,0.78188,247.07,0.78876,-0.0043199,-0.61469,278.47,#29,0.21722,0.2102,0.95322,181.56,-0.47442,-0.8307,0.29129,361.57,0.85308,-0.51551,-0.080719,251.47,#30,0.75016,0.64444,-0.14819,185.7,-0.40026,0.26415,-0.8775,326.47,-0.52635,0.71758,0.4561,300.37,#31,0.2808,0.11116,-0.95331,87.378,0.67964,0.6783,0.27928,173.5,0.67767,-0.72633,0.11492,625.89,#32,0.085863,0.88714,-0.45344,97.292,0.019196,-0.45651,-0.88951,319.25,-0.99612,0.067671,-0.056227,231.35,#33,-0.42317,-0.25444,0.86959,153.88,0.54564,-0.83777,0.020399,331.3,0.72333,0.48312,0.49335,227.97,#34,0.1826,0.98281,0.027205,182.16,0.93913,-0.18254,0.29104,299.21,0.29101,-0.027596,-0.95632,232,#35,-0.49471,-0.35996,0.79101,154.27,-0.78597,-0.20308,-0.58397,330.01,0.37084,-0.9106,-0.18245,227.45
    21009 
    21010 > view matrix models
    21011 > #24,-0.091059,-0.67112,-0.73573,499.84,0.87121,-0.41156,0.2676,169.35,-0.48239,-0.61661,0.62217,356.4,#26,0.30058,-0.93312,-0.19732,135.52,0.86157,0.17692,0.47581,265.74,-0.40908,-0.31302,0.85713,265.57,#27,0.73782,-0.40823,-0.53756,171.79,-0.21409,-0.8968,0.3872,295.83,-0.64014,-0.1706,-0.74907,288.9,#28,-0.075647,0.99169,-0.10404,222.44,0.61003,0.12856,0.78188,244.95,0.78876,-0.0043199,-0.61469,282.59,#29,0.21722,0.2102,0.95322,183.94,-0.47442,-0.8307,0.29129,359.45,0.85308,-0.51551,-0.080719,255.59,#30,0.75016,0.64444,-0.14819,188.08,-0.40026,0.26415,-0.8775,324.34,-0.52635,0.71758,0.4561,304.49,#31,0.2808,0.11116,-0.95331,89.759,0.67964,0.6783,0.27928,171.37,0.67767,-0.72633,0.11492,630.02,#32,0.085863,0.88714,-0.45344,99.673,0.019196,-0.45651,-0.88951,317.12,-0.99612,0.067671,-0.056227,235.47,#33,-0.42317,-0.25444,0.86959,156.27,0.54564,-0.83777,0.020399,329.17,0.72333,0.48312,0.49335,232.09,#34,0.1826,0.98281,0.027205,184.54,0.93913,-0.18254,0.29104,297.08,0.29101,-0.027596,-0.95632,236.13,#35,-0.49471,-0.35996,0.79101,156.65,-0.78597,-0.20308,-0.58397,327.88,0.37084,-0.9106,-0.18245,231.58
    21012 
    21013 > fitmap #24 inMap #25
    21014 
    21015 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    21016 points 
    21017 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    21018 steps = 76, shift = 11.3, angle = 4.11 degrees 
    21019  
    21020 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    21021 (#25) coordinates: 
    21022 Matrix rotation and translation 
    21023 -0.53642473 -0.84386935 -0.01153372 402.24113850 
    21024 0.84356452 -0.53654284 0.02281861 56.37220675 
    21025 -0.02544426 0.00251103 0.99967309 -108.72124741 
    21026 Axis -0.01203331 0.00824273 0.99989362 
    21027 Axis point 184.73115305 138.71203519 0.00000000 
    21028 Rotation angle (degrees) 122.45569249 
    21029 Shift along axis -113.08531389 
    21030  
    21031 
    21032 > fitmap #24 inMap #25
    21033 
    21034 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    21035 points 
    21036 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    21037 steps = 76, shift = 11.3, angle = 4.11 degrees 
    21038  
    21039 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    21040 (#25) coordinates: 
    21041 Matrix rotation and translation 
    21042 -0.53642473 -0.84386935 -0.01153372 402.24113850 
    21043 0.84356452 -0.53654284 0.02281861 56.37220675 
    21044 -0.02544426 0.00251103 0.99967309 -108.72124741 
    21045 Axis -0.01203331 0.00824273 0.99989362 
    21046 Axis point 184.73115305 138.71203519 0.00000000 
    21047 Rotation angle (degrees) 122.45569249 
    21048 Shift along axis -113.08531389 
    21049  
    21050 
    21051 > fitmap #24 inMap #25
    21052 
    21053 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    21054 points 
    21055 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    21056 steps = 40, shift = 0.011, angle = 0.00596 degrees 
    21057  
    21058 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    21059 (#25) coordinates: 
    21060 Matrix rotation and translation 
    21061 -0.53649562 -0.84382413 -0.01154465 402.25064108 
    21062 0.84351775 -0.53661382 0.02287794 56.37426930 
    21063 -0.02549998 0.00253580 0.99967160 -108.70923302 
    21064 Axis -0.01205444 0.00826972 0.99989315 
    21065 Axis point 184.73501117 138.70542498 0.00000000 
    21066 Rotation angle (degrees) 122.46055944 
    21067 Shift along axis -113.08032579 
    21068  
    21069 
    21070 > view matrix models
    21071 > #24,-0.091059,-0.67112,-0.73573,498.55,0.87121,-0.41156,0.2676,170.34,-0.48239,-0.61661,0.62217,354.34,#26,0.30058,-0.93312,-0.19732,134.23,0.86157,0.17692,0.47581,266.73,-0.40908,-0.31302,0.85713,263.51,#27,0.73782,-0.40823,-0.53756,170.51,-0.21409,-0.8968,0.3872,296.82,-0.64014,-0.1706,-0.74907,286.83,#28,-0.075647,0.99169,-0.10404,221.15,0.61003,0.12856,0.78188,245.94,0.78876,-0.0043199,-0.61469,280.53,#29,0.21722,0.2102,0.95322,182.65,-0.47442,-0.8307,0.29129,360.44,0.85308,-0.51551,-0.080719,253.52,#30,0.75016,0.64444,-0.14819,186.79,-0.40026,0.26415,-0.8775,325.33,-0.52635,0.71758,0.4561,302.43,#31,0.2808,0.11116,-0.95331,88.471,0.67964,0.6783,0.27928,172.36,0.67767,-0.72633,0.11492,627.95,#32,0.085863,0.88714,-0.45344,98.385,0.019196,-0.45651,-0.88951,318.11,-0.99612,0.067671,-0.056227,233.41,#33,-0.42317,-0.25444,0.86959,154.98,0.54564,-0.83777,0.020399,330.16,0.72333,0.48312,0.49335,230.02,#34,0.1826,0.98281,0.027205,183.25,0.93913,-0.18254,0.29104,298.07,0.29101,-0.027596,-0.95632,234.06,#35,-0.49471,-0.35996,0.79101,155.36,-0.78597,-0.20308,-0.58397,328.87,0.37084,-0.9106,-0.18245,229.51
    21072 
    21073 > view matrix models
    21074 > #24,-0.091059,-0.67112,-0.73573,496.48,0.87121,-0.41156,0.2676,170.21,-0.48239,-0.61661,0.62217,352.81,#26,0.30058,-0.93312,-0.19732,132.16,0.86157,0.17692,0.47581,266.6,-0.40908,-0.31302,0.85713,261.98,#27,0.73782,-0.40823,-0.53756,168.43,-0.21409,-0.8968,0.3872,296.69,-0.64014,-0.1706,-0.74907,285.3,#28,-0.075647,0.99169,-0.10404,219.08,0.61003,0.12856,0.78188,245.81,0.78876,-0.0043199,-0.61469,279,#29,0.21722,0.2102,0.95322,180.58,-0.47442,-0.8307,0.29129,360.31,0.85308,-0.51551,-0.080719,251.99,#30,0.75016,0.64444,-0.14819,184.72,-0.40026,0.26415,-0.8775,325.2,-0.52635,0.71758,0.4561,300.89,#31,0.2808,0.11116,-0.95331,86.398,0.67964,0.6783,0.27928,172.23,0.67767,-0.72633,0.11492,626.42,#32,0.085863,0.88714,-0.45344,96.313,0.019196,-0.45651,-0.88951,317.98,-0.99612,0.067671,-0.056227,231.88,#33,-0.42317,-0.25444,0.86959,152.9,0.54564,-0.83777,0.020399,330.03,0.72333,0.48312,0.49335,228.49,#34,0.1826,0.98281,0.027205,181.18,0.93913,-0.18254,0.29104,297.94,0.29101,-0.027596,-0.95632,232.53,#35,-0.49471,-0.35996,0.79101,153.29,-0.78597,-0.20308,-0.58397,328.75,0.37084,-0.9106,-0.18245,227.98
    21075 
    21076 > ui mousemode right "rotate selected models"
    21077 
    21078 > view matrix models
    21079 > #24,-0.096153,-0.71647,-0.69095,496.71,0.87125,-0.39627,0.28966,162.28,-0.48134,-0.57414,0.66233,335.25,#26,0.2987,-0.94482,-0.13449,130.36,0.85155,0.20024,0.48453,267.91,-0.43086,-0.25926,0.86437,265.2,#27,0.6934,-0.44084,-0.56996,168.71,-0.2363,-0.88638,0.3981,297.12,-0.68071,-0.14136,-0.71879,286.2,#28,-0.013536,0.99278,-0.11916,217.55,0.61519,0.10221,0.78172,244.89,0.78826,-0.062724,-0.61214,277.26,#29,0.25406,0.15796,0.9542,180.55,-0.47636,-0.83818,0.26558,360.25,0.84175,-0.52202,-0.1377,251.87,#30,0.70746,0.69186,-0.1443,186.62,-0.42225,0.25005,-0.87131,325.26,-0.56674,0.67735,0.46904,300.65,#31,0.33753,0.086382,-0.93734,103.46,0.67485,0.672,0.30494,176.34,0.65624,-0.73549,0.16853,632.23,#32,0.028137,0.87731,-0.4791,94.182,0.012652,-0.47957,-0.87741,320.09,-0.99952,0.018626,-0.024593,236.94,#33,-0.36585,-0.24772,0.8971,150.78,0.55976,-0.82866,-0.0005438,330.62,0.74352,0.50196,0.44183,230.2,#34,0.2238,0.97441,-0.020957,178.39,0.9352,-0.20864,0.28613,297.81,0.27443,-0.083635,-0.95796,232.77,#35,-0.49268,-0.41762,0.76345,151.1,-0.77098,-0.19736,-0.6055,329.32,0.40354,-0.88693,-0.22474,229.67
    21080 
    21081 > view matrix models
    21082 > #24,-0.070397,-0.68065,-0.72922,492.25,0.83661,-0.43842,0.32845,169.89,-0.54326,-0.58695,0.6003,365.56,#26,0.3209,-0.92866,-0.18604,130.31,0.82297,0.17618,0.54007,268.15,-0.46877,-0.32642,0.8208,267.47,#27,0.73258,-0.42933,-0.52821,167.29,-0.27642,-0.89677,0.34553,298.95,-0.62203,-0.10712,-0.77563,288.66,#28,-0.061227,0.99446,-0.08548,216.71,0.66619,0.10449,0.73843,246.57,0.74326,-0.011735,-0.6689,286.08,#29,0.20589,0.19051,0.95985,180.93,-0.41756,-0.86999,0.26224,359.74,0.88502,-0.45478,-0.099575,250.94,#30,0.7405,0.65047,-0.16893,184.25,-0.45427,0.29923,-0.83911,328.11,-0.49527,0.6981,0.51707,302.22,#31,0.29677,0.12721,-0.94644,82.315,0.71929,0.62212,0.30917,201.04,0.62813,-0.77252,0.093124,637.62,#32,0.086338,0.87609,-0.47436,95.694,-0.053717,-0.47135,-0.88031,318.09,-0.99482,0.10149,0.0063652,233.74,#33,-0.41017,-0.27421,0.86981,152.56,0.60553,-0.79506,0.034902,328.53,0.68197,0.54101,0.49216,229.6,#34,0.20476,0.97822,0.034127,180.06,0.95288,-0.20719,0.22158,296.15,0.22382,-0.012852,-0.97454,235.96,#35,-0.51318,-0.36462,0.77698,152.91,-0.74571,-0.25877,-0.61397,327.2,0.42492,-0.89448,-0.13911,229.18
    21083 
    21084 > fitmap #24 inMap #25
    21085 
    21086 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    21087 points 
    21088 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    21089 steps = 96, shift = 8.58, angle = 6.65 degrees 
    21090  
    21091 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    21092 (#25) coordinates: 
    21093 Matrix rotation and translation 
    21094 -0.53648617 -0.84383021 -0.01153978 402.25143206 
    21095 0.84352386 -0.53660426 0.02287710 56.36820755 
    21096 -0.02549668 0.00253916 0.99967168 -108.70823429 
    21097 Axis -0.01205186 0.00827059 0.99989317 
    21098 Axis point 184.73698445 138.70421395 0.00000000 
    21099 Rotation angle (degrees) 122.45991149 
    21100 Shift along axis -113.07830171 
    21101  
    21102 
    21103 > fitmap #24 inMap #25
    21104 
    21105 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    21106 points 
    21107 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    21108 steps = 96, shift = 8.58, angle = 6.65 degrees 
    21109  
    21110 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    21111 (#25) coordinates: 
    21112 Matrix rotation and translation 
    21113 -0.53648617 -0.84383021 -0.01153978 402.25143206 
    21114 0.84352386 -0.53660426 0.02287710 56.36820755 
    21115 -0.02549668 0.00253916 0.99967168 -108.70823429 
    21116 Axis -0.01205186 0.00827059 0.99989317 
    21117 Axis point 184.73698445 138.70421395 0.00000000 
    21118 Rotation angle (degrees) 122.45991149 
    21119 Shift along axis -113.07830171 
    21120  
    21121 
    21122 > fitmap #24 inMap #25
    21123 
    21124 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    21125 points 
    21126 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    21127 steps = 96, shift = 8.58, angle = 6.65 degrees 
    21128  
    21129 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    21130 (#25) coordinates: 
    21131 Matrix rotation and translation 
    21132 -0.53648617 -0.84383021 -0.01153978 402.25143206 
    21133 0.84352386 -0.53660426 0.02287710 56.36820755 
    21134 -0.02549668 0.00253916 0.99967168 -108.70823429 
    21135 Axis -0.01205186 0.00827059 0.99989317 
    21136 Axis point 184.73698445 138.70421395 0.00000000 
    21137 Rotation angle (degrees) 122.45991149 
    21138 Shift along axis -113.07830171 
    21139  
    21140 
    21141 > ui mousemode right "translate selected models"
    21142 
    21143 > view matrix models
    21144 > #24,-0.070397,-0.68065,-0.72922,494.95,0.83661,-0.43842,0.32845,171.78,-0.54326,-0.58695,0.6003,363.73,#26,0.3209,-0.92866,-0.18604,133.01,0.82297,0.17618,0.54007,270.03,-0.46877,-0.32642,0.8208,265.65,#27,0.73258,-0.42933,-0.52821,169.99,-0.27642,-0.89677,0.34553,300.84,-0.62203,-0.10712,-0.77563,286.84,#28,-0.061227,0.99446,-0.08548,219.41,0.66619,0.10449,0.73843,248.46,0.74326,-0.011735,-0.6689,284.25,#29,0.20589,0.19051,0.95985,183.63,-0.41756,-0.86999,0.26224,361.62,0.88502,-0.45478,-0.099575,249.12,#30,0.7405,0.65047,-0.16893,186.95,-0.45427,0.29923,-0.83911,330,-0.49527,0.6981,0.51707,300.4,#31,0.29677,0.12721,-0.94644,85.014,0.71929,0.62212,0.30917,202.92,0.62813,-0.77252,0.093124,635.8,#32,0.086338,0.87609,-0.47436,98.392,-0.053717,-0.47135,-0.88031,319.97,-0.99482,0.10149,0.0063652,231.91,#33,-0.41017,-0.27421,0.86981,155.25,0.60553,-0.79506,0.034902,330.41,0.68197,0.54101,0.49216,227.78,#34,0.20476,0.97822,0.034127,182.76,0.95288,-0.20719,0.22158,298.03,0.22382,-0.012852,-0.97454,234.13,#35,-0.51318,-0.36462,0.77698,155.61,-0.74571,-0.25877,-0.61397,329.09,0.42492,-0.89448,-0.13911,227.36
    21145 
    21146 > fitmap #24 inMap #25
    21147 
    21148 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    21149 points 
    21150 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    21151 steps = 76, shift = 6.22, angle = 6.65 degrees 
    21152  
    21153 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    21154 (#25) coordinates: 
    21155 Matrix rotation and translation 
    21156 -0.53648729 -0.84382948 -0.01154084 402.25291912 
    21157 0.84352337 -0.53660543 0.02286769 56.36357459 
    21158 -0.02548931 0.00253326 0.99967188 -108.70723034 
    21159 Axis -0.01204980 0.00826560 0.99989324 
    21160 Axis point 184.73930075 138.70193089 0.00000000 
    21161 Rotation angle (degrees) 122.45998234 
    21162 Shift along axis -113.07681168 
    21163  
    21164 
    21165 > fitmap #24 inMap #25
    21166 
    21167 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    21168 points 
    21169 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    21170 steps = 76, shift = 6.22, angle = 6.65 degrees 
    21171  
    21172 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    21173 (#25) coordinates: 
    21174 Matrix rotation and translation 
    21175 -0.53648729 -0.84382948 -0.01154084 402.25291912 
    21176 0.84352337 -0.53660543 0.02286769 56.36357459 
    21177 -0.02548931 0.00253326 0.99967188 -108.70723034 
    21178 Axis -0.01204980 0.00826560 0.99989324 
    21179 Axis point 184.73930075 138.70193089 0.00000000 
    21180 Rotation angle (degrees) 122.45998234 
    21181 Shift along axis -113.07681168 
    21182  
    21183 
    21184 > fitmap #24 inMap #25
    21185 
    21186 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    21187 points 
    21188 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    21189 steps = 76, shift = 6.22, angle = 6.65 degrees 
    21190  
    21191 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    21192 (#25) coordinates: 
    21193 Matrix rotation and translation 
    21194 -0.53648729 -0.84382948 -0.01154084 402.25291912 
    21195 0.84352337 -0.53660543 0.02286769 56.36357459 
    21196 -0.02548931 0.00253326 0.99967188 -108.70723034 
    21197 Axis -0.01204980 0.00826560 0.99989324 
    21198 Axis point 184.73930075 138.70193089 0.00000000 
    21199 Rotation angle (degrees) 122.45998234 
    21200 Shift along axis -113.07681168 
    21201  
    21202 
    21203 > ui mousemode right "rotate selected models"
    21204 
    21205 > view matrix models
    21206 > #24,-0.091446,-0.64225,-0.76102,499.15,0.83912,-0.4612,0.28839,184.6,-0.5362,-0.61222,0.5811,371.4,#26,0.29764,-0.92536,-0.23479,136.29,0.84203,0.13856,0.52133,267.81,-0.44988,-0.35287,0.82042,263.3,#27,0.76269,-0.38521,-0.51953,171.19,-0.236,-0.91365,0.33098,299.97,-0.60217,-0.12982,-0.78774,285.95,#28,-0.11348,0.98866,-0.098307,222.97,0.6538,0.14881,0.74189,249.88,0.74811,0.019914,-0.66328,284.32,#29,0.19762,0.24301,0.94968,183.23,-0.4186,-0.8551,0.30591,361.76,0.88641,-0.45799,-0.067257,249.31,#30,0.77476,0.61502,-0.14663,186.4,-0.41484,0.31947,-0.85197,329.69,-0.47713,0.7209,0.50265,300.33,#31,0.24509,0.12242,-0.96174,80.201,0.72418,0.63643,0.26556,194.17,0.64459,-0.76156,0.067324,631.07,#32,0.11865,0.8929,-0.43434,100.5,-0.037833,-0.43305,-0.90058,316.56,-0.99221,0.12329,-0.017602,229.06,#33,-0.45734,-0.25446,0.85211,156.93,0.5784,-0.81294,0.067679,329.57,0.67549,0.52382,0.51897,226.78,#34,0.15493,0.98647,0.053551,185.66,0.95829,-0.16324,0.2346,298.38,0.24017,0.01497,-0.97062,233.63,#35,-0.49178,-0.32547,0.8076,157.36,-0.77289,-0.26396,-0.57703,328.27,0.40098,-0.90796,-0.12174,226.36
    21207 
    21208 > view matrix models
    21209 > #24,-0.09818,-0.66023,-0.74461,500.6,0.82524,-0.47218,0.30986,185.16,-0.55618,-0.58407,0.59121,368.1,#26,0.29289,-0.93256,-0.21106,135.87,0.82733,0.13652,0.54487,268.37,-0.47931,-0.3342,0.81152,266.53,#27,0.74617,-0.39496,-0.53595,171.54,-0.25807,-0.91367,0.31402,300.84,-0.61371,-0.096,-0.78368,287.46,#28,-0.090553,0.98993,-0.10883,222.89,0.67439,0.14136,0.72471,250.31,0.7328,-0.0077665,-0.6804,285.94,#29,0.21588,0.22557,0.95001,183.14,-0.3964,-0.86892,0.29639,361.53,0.89234,-0.44057,-0.098163,248.9,#30,0.75993,0.63459,-0.14072,187.31,-0.4336,0.33363,-0.83707,330.81,-0.48424,0.69713,0.52869,300.67,#31,0.26592,0.10868,-0.95785,88.133,0.73911,0.61491,0.27496,205.01,0.61887,-0.78107,0.083185,637.38,#32,0.094374,0.8924,-0.44127,99.617,-0.065209,-0.43675,-0.89722,316.48,-0.9934,0.11345,0.016975,231.86,#33,-0.43662,-0.24772,0.86487,156.07,0.59985,-0.79663,0.074651,328.97,0.67049,0.55138,0.49641,227.88,#34,0.16775,0.98532,0.031821,184.73,0.96307,-0.17069,0.20822,297.74,0.21059,-0.0042819,-0.97756,234.88,#35,-0.48764,-0.34924,0.80015,156.48,-0.75797,-0.28544,-0.58652,327.65,0.43324,-0.8925,-0.12552,227.48
    21210 
    21211 > fitmap #24 inMap #25
    21212 
    21213 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    21214 points 
    21215 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    21216 steps = 84, shift = 6.48, angle = 5.9 degrees 
    21217  
    21218 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    21219 (#25) coordinates: 
    21220 Matrix rotation and translation 
    21221 -0.53645385 -0.84385081 -0.01153598 402.23915451 
    21222 0.84354606 -0.53657201 0.02281500 56.39401907 
    21223 -0.02544234 0.00250807 0.99967314 -108.72739308 
    21224 Axis -0.01203319 0.00824044 0.99989364 
    21225 Axis point 184.72484270 138.71777738 0.00000000 
    21226 Rotation angle (degrees) 122.45766945 
    21227 Shift along axis -113.09133960 
    21228  
    21229 
    21230 > fitmap #24 inMap #25
    21231 
    21232 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    21233 points 
    21234 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    21235 steps = 84, shift = 6.48, angle = 5.9 degrees 
    21236  
    21237 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    21238 (#25) coordinates: 
    21239 Matrix rotation and translation 
    21240 -0.53645385 -0.84385081 -0.01153598 402.23915451 
    21241 0.84354606 -0.53657201 0.02281500 56.39401907 
    21242 -0.02544234 0.00250807 0.99967314 -108.72739308 
    21243 Axis -0.01203319 0.00824044 0.99989364 
    21244 Axis point 184.72484270 138.71777738 0.00000000 
    21245 Rotation angle (degrees) 122.45766945 
    21246 Shift along axis -113.09133960 
    21247  
    21248 
    21249 > view matrix models
    21250 > #24,-0.11173,-0.63008,-0.76845,502.97,0.82758,-0.48708,0.27904,194.41,-0.55011,-0.60478,0.57586,374.23,#26,0.27709,-0.92819,-0.24837,138.26,0.84157,0.1097,0.52889,266.8,-0.46367,-0.35557,0.81153,264.6,#27,0.76885,-0.36234,-0.52687,172.33,-0.22698,-0.92495,0.30487,300.19,-0.59779,-0.11481,-0.79339,286.72,#28,-0.13032,0.98466,-0.11607,225.34,0.66312,0.17359,0.72811,251.38,0.73708,0.01792,-0.67556,285.95,#29,0.20713,0.26454,0.94187,182.87,-0.3988,-0.85629,0.32821,361.63,0.89334,-0.4436,-0.071869,249.07,#30,0.78523,0.60626,-0.12592,186.8,-0.40337,0.34654,-0.84688,330.51,-0.46979,0.71579,0.51666,300.61,#31,0.22649,0.1073,-0.96809,83.686,0.74063,0.62654,0.24272,197.91,0.63259,-0.77197,0.062434,633.51,#32,0.12045,0.90325,-0.41187,101.3,-0.051345,-0.40867,-0.91124,314.07,-0.99139,0.1309,-0.0028462,229.53,#33,-0.47214,-0.2347,0.8497,157.4,0.57802,-0.81019,0.09739,328.44,0.66556,0.53713,0.51819,227.06,#34,0.13092,0.9902,0.048593,186.89,0.96569,-0.13846,0.21971,298.08,0.22429,0.018161,-0.97435,234.44,#35,-0.47284,-0.31802,0.82176,157.86,-0.77808,-0.28698,-0.55877,327.14,0.41353,-0.90361,-0.11175,226.66
    21251 
    21252 > view matrix models
    21253 > #24,-0.10334,-0.67936,-0.7265,501.55,0.82094,-0.47065,0.32334,182.85,-0.56159,-0.56299,0.60635,361.79,#26,0.28951,-0.93908,-0.18524,135.29,0.8196,0.14325,0.55474,268.96,-0.49441,-0.31242,0.81114,268.44,#27,0.72803,-0.40668,-0.55189,171.81,-0.27178,-0.91029,0.31226,301.25,-0.62937,-0.077342,-0.77324,288.17,#28,-0.065378,0.99085,-0.1181,222.58,0.68223,0.13076,0.71935,250.17,0.72821,-0.03354,-0.68453,285.88,#29,0.23377,0.20556,0.95032,183.08,-0.3902,-0.8754,0.28534,361.44,0.89056,-0.43752,-0.12443,248.75,#30,0.74317,0.65508,-0.13628,188.22,-0.44622,0.33345,-0.83048,331.18,-0.49859,0.678,0.54012,300.7,#31,0.28881,0.095699,-0.95259,96.099,0.74207,0.6063,0.2859,209.63,0.60491,-0.78946,0.10409,640.95,#32,0.069075,0.89035,-0.45001,98.699,-0.075612,-0.44511,-0.89228,317.12,-0.99474,0.09566,0.036575,234.21,#33,-0.41363,-0.24226,0.87762,155.17,0.61077,-0.78869,0.070156,328.98,0.67518,0.56505,0.47419,228.72,#34,0.1829,0.98308,0.0097771,183.66,0.96319,-0.18118,0.1986,297.51,0.19701,-0.026908,-0.98003,235.31,#35,-0.48462,-0.37417,0.79066,155.55,-0.74861,-0.29015,-0.59615,327.65,0.45248,-0.8808,-0.13949,228.33
    21254 
    21255 > ui mousemode right "translate selected models"
    21256 
    21257 > view matrix models
    21258 > #24,-0.10334,-0.67936,-0.7265,500.14,0.82094,-0.47065,0.32334,184.27,-0.56159,-0.56299,0.60635,360.94,#26,0.28951,-0.93908,-0.18524,133.88,0.8196,0.14325,0.55474,270.39,-0.49441,-0.31242,0.81114,267.59,#27,0.72803,-0.40668,-0.55189,170.4,-0.27178,-0.91029,0.31226,302.68,-0.62937,-0.077342,-0.77324,287.32,#28,-0.065378,0.99085,-0.1181,221.17,0.68223,0.13076,0.71935,251.59,0.72821,-0.03354,-0.68453,285.02,#29,0.23377,0.20556,0.95032,181.67,-0.3902,-0.8754,0.28534,362.87,0.89056,-0.43752,-0.12443,247.9,#30,0.74317,0.65508,-0.13628,186.81,-0.44622,0.33345,-0.83048,332.6,-0.49859,0.678,0.54012,299.84,#31,0.28881,0.095699,-0.95259,94.688,0.74207,0.6063,0.2859,211.06,0.60491,-0.78946,0.10409,640.1,#32,0.069075,0.89035,-0.45001,97.288,-0.075612,-0.44511,-0.89228,318.55,-0.99474,0.09566,0.036575,233.35,#33,-0.41363,-0.24226,0.87762,153.76,0.61077,-0.78869,0.070156,330.4,0.67518,0.56505,0.47419,227.87,#34,0.1829,0.98308,0.0097771,182.25,0.96319,-0.18118,0.1986,298.93,0.19701,-0.026908,-0.98003,234.46,#35,-0.48462,-0.37417,0.79066,154.14,-0.74861,-0.29015,-0.59615,329.07,0.45248,-0.8808,-0.13949,227.47
    21259 
    21260 > fitmap #24 inMap #25
    21261 
    21262 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    21263 points 
    21264 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    21265 steps = 92, shift = 4.58, angle = 6.41 degrees 
    21266  
    21267 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    21268 (#25) coordinates: 
    21269 Matrix rotation and translation 
    21270 -0.53650463 -0.84381837 -0.01154683 402.25242935 
    21271 0.84351198 -0.53662289 0.02287816 56.37440069 
    21272 -0.02550131 0.00253435 0.99967157 -108.70723273 
    21273 Axis -0.01205551 0.00826927 0.99989314 
    21274 Axis point 184.73604051 138.70452221 0.00000000 
    21275 Rotation angle (degrees) 122.46117420 
    21276 Shift along axis -113.07880045 
    21277  
    21278 
    21279 > fitmap #24 inMap #25
    21280 
    21281 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    21282 points 
    21283 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    21284 steps = 92, shift = 4.58, angle = 6.41 degrees 
    21285  
    21286 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    21287 (#25) coordinates: 
    21288 Matrix rotation and translation 
    21289 -0.53650463 -0.84381837 -0.01154683 402.25242935 
    21290 0.84351198 -0.53662289 0.02287816 56.37440069 
    21291 -0.02550131 0.00253435 0.99967157 -108.70723273 
    21292 Axis -0.01205551 0.00826927 0.99989314 
    21293 Axis point 184.73604051 138.70452221 0.00000000 
    21294 Rotation angle (degrees) 122.46117420 
    21295 Shift along axis -113.07880045 
    21296  
    21297 
    21298 > fitmap #24 inMap #25
    21299 
    21300 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 28339
    21301 points 
    21302 correlation = 0.6996, correlation about mean = 0.3479, overlap = 18.84 
    21303 steps = 92, shift = 4.58, angle = 6.41 degrees 
    21304  
    21305 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    21306 (#25) coordinates: 
    21307 Matrix rotation and translation 
    21308 -0.53650463 -0.84381837 -0.01154683 402.25242935 
    21309 0.84351198 -0.53662289 0.02287816 56.37440069 
    21310 -0.02550131 0.00253435 0.99967157 -108.70723273 
    21311 Axis -0.01205551 0.00826927 0.99989314 
    21312 Axis point 184.73604051 138.70452221 0.00000000 
    21313 Rotation angle (degrees) 122.46117420 
    21314 Shift along axis -113.07880045 
    21315  
    21316 
    21317 > select subtract #35
    21318 
    21319 39361 atoms, 40096 bonds, 1 pseudobond, 4960 residues, 12 models selected 
    21320 
    21321 > select subtract #34
    21322 
    21323 36994 atoms, 37698 bonds, 1 pseudobond, 4662 residues, 11 models selected 
    21324 
    21325 > select subtract #33
    21326 
    21327 35574 atoms, 36257 bonds, 1 pseudobond, 4485 residues, 10 models selected 
    21328 
    21329 > select subtract #32
    21330 
    21331 28901 atoms, 29471 bonds, 3632 residues, 8 models selected 
    21332 
    21333 > select subtract #31
    21334 
    21335 27439 atoms, 27990 bonds, 3453 residues, 7 models selected 
    21336 
    21337 > select subtract #30
    21338 
    21339 20225 atoms, 20617 bonds, 2548 residues, 6 models selected 
    21340 
    21341 > select subtract #29
    21342 
    21343 18768 atoms, 19134 bonds, 2367 residues, 5 models selected 
    21344 
    21345 > select subtract #28
    21346 
    21347 17311 atoms, 17651 bonds, 2186 residues, 4 models selected 
    21348 
    21349 > select subtract #27
    21350 
    21351 9810 atoms, 10032 bonds, 1233 residues, 3 models selected 
    21352 
    21353 > select subtract #26
    21354 
    21355 2 models selected 
    21356 
    21357 > hide #!25 models
    21358 
    21359 > select subtract #24
    21360 
    21361 Nothing selected 
    21362 
    21363 > show #26 models
    21364 
    21365 > fitmap #26 inMap #24
    21366 
    21367 Fit molecule copy of CopA_F8WHL2.pdb (#26) to map postprocess_20231221.mrc
    21368 (#24) using 9810 atoms 
    21369 average map value = 0.001845, steps = 116 
    21370 shifted from previous position = 16.4 
    21371 rotated from previous position = 4.06 degrees 
    21372 atoms outside contour = 7851, contour level = 0.0032978 
    21373  
    21374 Position of copy of CopA_F8WHL2.pdb (#26) relative to postprocess_20231221.mrc
    21375 (#24) coordinates: 
    21376 Matrix rotation and translation 
    21377 0.89996653 0.40445765 0.16270906 162.22736905 
    21378 -0.20995376 0.72918744 -0.65131028 244.63095239 
    21379 -0.38207283 0.55199608 0.74116170 239.12828538 
    21380 Axis 0.82599894 0.37396068 -0.42175724 
    21381 Axis point 0.00000000 -322.90335119 438.30306870 
    21382 Rotation angle (degrees) 46.75197840 
    21383 Shift along axis 124.62790578 
    21384  
    21385 
    21386 > hide #26 models
    21387 
    21388 > show #27 models
    21389 
    21390 > fitmap #27 inMap #24
    21391 
    21392 Fit molecule copy of CopB_Q9JIF7.pdb (#27) to map postprocess_20231221.mrc
    21393 (#24) using 7501 atoms 
    21394 average map value = 0.002923, steps = 132 
    21395 shifted from previous position = 5.04 
    21396 rotated from previous position = 5.54 degrees 
    21397 atoms outside contour = 5216, contour level = 0.0032978 
    21398  
    21399 Position of copy of CopB_Q9JIF7.pdb (#27) relative to postprocess_20231221.mrc
    21400 (#24) coordinates: 
    21401 Matrix rotation and translation 
    21402 -0.04204995 -0.73306615 0.67885625 172.36139873 
    21403 -0.03865825 0.68014219 0.73206020 204.57555030 
    21404 -0.99836734 0.00453970 -0.05693900 236.22075458 
    21405 Axis -0.37200954 0.85762968 0.35507778 
    21406 Axis point 209.22295306 0.00000000 -39.71296119 
    21407 Rotation angle (degrees) 102.08856313 
    21408 Shift along axis 195.20672158 
    21409  
    21410 
    21411 > select add #27
    21412 
    21413 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    21414 
    21415 > view matrix models
    21416 > #27,0.77002,-0.33054,-0.54573,169.9,-0.2377,-0.94238,0.23541,304.33,-0.59209,-0.051551,-0.80422,284.85
    21417 
    21418 > fitmap #27 inMap #24
    21419 
    21420 Fit molecule copy of CopB_Q9JIF7.pdb (#27) to map postprocess_20231221.mrc
    21421 (#24) using 7501 atoms 
    21422 average map value = 0.002923, steps = 76 
    21423 shifted from previous position = 4.69 
    21424 rotated from previous position = 0.0487 degrees 
    21425 atoms outside contour = 5211, contour level = 0.0032978 
    21426  
    21427 Position of copy of CopB_Q9JIF7.pdb (#27) relative to postprocess_20231221.mrc
    21428 (#24) coordinates: 
    21429 Matrix rotation and translation 
    21430 -0.04153062 -0.73285289 0.67911843 172.37785500 
    21431 -0.03806305 0.68037194 0.73187788 204.57714323 
    21432 -0.99841194 0.00454602 -0.05615089 236.24348469 
    21433 Axis -0.37185060 0.85764245 0.35521340 
    21434 Axis point 209.26127593 0.00000000 -39.81318725 
    21435 Rotation angle (degrees) 102.04353100 
    21436 Shift along axis 195.27208462 
    21437  
    21438 
    21439 > view matrix models
    21440 > #27,0.76958,-0.33073,-0.54623,170.89,-0.23753,-0.9423,0.23589,303.26,-0.59273,-0.051788,-0.80373,284.04
    21441 
    21442 > ui mousemode right "rotate selected models"
    21443 
    21444 > view matrix models
    21445 > #27,0.7306,-0.42488,-0.53451,171.25,-0.27862,-0.90018,0.33472,302.78,-0.62337,-0.095623,-0.77606,284.13
    21446 
    21447 > view matrix models
    21448 > #27,0.76175,-0.3737,-0.52923,170.94,-0.17385,-0.90482,0.38868,301.97,-0.62411,-0.20407,-0.75422,284.28
    21449 
    21450 > fitmap #27 inMap #24
    21451 
    21452 Fit molecule copy of CopB_Q9JIF7.pdb (#27) to map postprocess_20231221.mrc
    21453 (#24) using 7501 atoms 
    21454 average map value = 0.002633, steps = 44 
    21455 shifted from previous position = 3.61 
    21456 rotated from previous position = 3.9 degrees 
    21457 atoms outside contour = 5376, contour level = 0.0032978 
    21458  
    21459 Position of copy of CopB_Q9JIF7.pdb (#27) relative to postprocess_20231221.mrc
    21460 (#24) coordinates: 
    21461 Matrix rotation and translation 
    21462 0.05431385 -0.66256715 0.74703064 172.62333642 
    21463 -0.01180746 0.74765647 0.66398071 209.75331516 
    21464 -0.99845410 -0.04488388 0.03278487 233.19327392 
    21465 Axis -0.35564828 0.87573658 0.32649616 
    21466 Axis point 217.41288898 0.00000000 -50.32061187 
    21467 Rotation angle (degrees) 94.73931746 
    21468 Shift along axis 198.43216601 
    21469  
    21470 
    21471 > view matrix models
    21472 > #27,0.79432,-0.34789,-0.49803,172.17,-0.172,-0.91504,0.36487,302.85,-0.58265,-0.20416,-0.78666,281.24
    21473 
    21474 > ui mousemode right "translate selected models"
    21475 
    21476 > view matrix models
    21477 > #27,0.79432,-0.34789,-0.49803,175.55,-0.172,-0.91504,0.36487,308.21,-0.58265,-0.20416,-0.78666,283.6
    21478 
    21479 > fitmap #27 inMap #24
    21480 
    21481 Fit molecule copy of CopB_Q9JIF7.pdb (#27) to map postprocess_20231221.mrc
    21482 (#24) using 7501 atoms 
    21483 average map value = 0.002923, steps = 112 
    21484 shifted from previous position = 4.6 
    21485 rotated from previous position = 8.94 degrees 
    21486 atoms outside contour = 5214, contour level = 0.0032978 
    21487  
    21488 Position of copy of CopB_Q9JIF7.pdb (#27) relative to postprocess_20231221.mrc
    21489 (#24) coordinates: 
    21490 Matrix rotation and translation 
    21491 -0.04165939 -0.73303937 0.67890925 172.36144600 
    21492 -0.03865688 0.68017292 0.73203172 204.56515197 
    21493 -0.99838376 0.00425148 -0.05667260 236.23504293 
    21494 Axis -0.37211436 0.85760065 0.35503807 
    21495 Axis point 209.28231383 0.00000000 -39.74893852 
    21496 Rotation angle (degrees) 102.06841613 
    21497 Shift along axis 195.16947240 
    21498  
    21499 
    21500 > select subtract #27
    21501 
    21502 Nothing selected 
    21503 
    21504 > hide #27 models
    21505 
    21506 > show #28 models
    21507 
    21508 > fitmap #28 inMap #24
    21509 
    21510 Fit molecule copy of hArf1_P84078 (#28) to map postprocess_20231221.mrc (#24)
    21511 using 1457 atoms 
    21512 average map value = 0.002588, steps = 88 
    21513 shifted from previous position = 12.8 
    21514 rotated from previous position = 6.38 degrees 
    21515 atoms outside contour = 1281, contour level = 0.0032978 
    21516  
    21517 Position of copy of hArf1_P84078 (#28) relative to postprocess_20231221.mrc
    21518 (#24) coordinates: 
    21519 Matrix rotation and translation 
    21520 0.15847948 0.02339073 0.98708516 126.69876215 
    21521 -0.68653702 -0.71588385 0.12718971 200.56846102 
    21522 0.70961339 -0.69782747 -0.09739430 178.43391214 
    21523 Axis -0.73450547 0.24703066 -0.63204237 
    21524 Axis point 0.00000000 138.25364345 -15.33318730 
    21525 Rotation angle (degrees) 145.83250639 
    21526 Shift along axis -156.29216940 
    21527  
    21528 
    21529 > hide #28 models
    21530 
    21531 > show #29 models
    21532 
    21533 > fitmap #29 inMap #24
    21534 
    21535 Fit molecule copy of hArf1_P84078 (#29) to map postprocess_20231221.mrc (#24)
    21536 using 1457 atoms 
    21537 average map value = 0.003766, steps = 60 
    21538 shifted from previous position = 5.01 
    21539 rotated from previous position = 6.4 degrees 
    21540 atoms outside contour = 617, contour level = 0.0032978 
    21541  
    21542 Position of copy of hArf1_P84078 (#29) relative to postprocess_20231221.mrc
    21543 (#24) coordinates: 
    21544 Matrix rotation and translation 
    21545 -0.84456626 -0.49420934 0.20607023 243.01078108 
    21546 -0.47688761 0.51925293 -0.70919291 195.93798301 
    21547 0.24348719 -0.69723275 -0.67422582 220.56872240 
    21548 Axis 0.27858679 -0.87154962 0.40347325 
    21549 Axis point 151.42747314 0.00000000 157.15853491 
    21550 Rotation angle (degrees) 178.77000789 
    21551 Shift along axis -14.07649955 
    21552  
    21553 
    21554 > hide #29 models
    21555 
    21556 > show #30 models
    21557 
    21558 > fitmap #30 inMap #24
    21559 
    21560 Fit molecule copy of CopBprime_O55029.pdb (#30) to map
    21561 postprocess_20231221.mrc (#24) using 7214 atoms 
    21562 average map value = 0.00312, steps = 80 
    21563 shifted from previous position = 4.34 
    21564 rotated from previous position = 6.44 degrees 
    21565 atoms outside contour = 3972, contour level = 0.0032978 
    21566  
    21567 Position of copy of CopBprime_O55029.pdb (#30) relative to
    21568 postprocess_20231221.mrc (#24) coordinates: 
    21569 Matrix rotation and translation 
    21570 -0.16261321 -0.17515584 -0.97101873 188.51477883 
    21571 -0.01403262 -0.98360736 0.17977662 177.40448822 
    21572 -0.98659010 0.04285999 0.15748965 238.56224194 
    21573 Axis -0.64579491 0.07344552 0.75997019 
    21574 Axis point 189.60066445 85.40633709 0.00000000 
    21575 Rotation angle (degrees) 173.91485430 
    21576 Shift along axis 72.58787161 
    21577  
    21578 
    21579 > hide #30 models
    21580 
    21581 > show #31 models
    21582 
    21583 > fitmap #31 inMap #24
    21584 
    21585 Fit molecule copy of CopD_Q5XJY5 (#31) to map postprocess_20231221.mrc (#24)
    21586 using 1462 atoms 
    21587 average map value = 0.003203, steps = 324 
    21588 shifted from previous position = 5.13 
    21589 rotated from previous position = 24.8 degrees 
    21590 atoms outside contour = 880, contour level = 0.0032978 
    21591  
    21592 Position of copy of CopD_Q5XJY5 (#31) relative to postprocess_20231221.mrc
    21593 (#24) coordinates: 
    21594 Matrix rotation and translation 
    21595 -0.03835878 0.89491137 0.44459224 -96.27105677 
    21596 -0.99475022 -0.07643914 0.06803729 102.74398933 
    21597 0.09487159 -0.43964840 0.89314538 477.54730683 
    21598 Axis -0.25541626 0.17594418 -0.95068722 
    21599 Axis point -29.88566959 190.29797301 0.00000000 
    21600 Rotation angle (degrees) 96.36294863 
    21601 Shift along axis -411.33171958 
    21602  
    21603 
    21604 > hide #31 models
    21605 
    21606 > show #!32 models
    21607 
    21608 > fitmap #32 inMap #24
    21609 
    21610 Fit molecule copy of CopG_Q9QZE5 (#32) to map postprocess_20231221.mrc (#24)
    21611 using 6673 atoms 
    21612 average map value = 0.003524, steps = 72 
    21613 shifted from previous position = 3.77 
    21614 rotated from previous position = 6.37 degrees 
    21615 atoms outside contour = 4307, contour level = 0.0032978 
    21616  
    21617 Position of copy of CopG_Q9QZE5 (#32) relative to postprocess_20231221.mrc
    21618 (#24) coordinates: 
    21619 Matrix rotation and translation 
    21620 0.48899567 -0.51150146 -0.70657589 223.56207168 
    21621 0.54905607 -0.44893907 0.70497599 282.28594871 
    21622 -0.67780577 -0.73267999 0.06131372 258.73118766 
    21623 Axis -0.80462203 -0.01610195 0.59356896 
    21624 Axis point 0.00000000 245.02634740 103.88878785 
    21625 Rotation angle (degrees) 116.69973303 
    21626 Shift along axis -30.85352207 
    21627  
    21628 
    21629 > hide #!32 models
    21630 
    21631 > show #33 models
    21632 
    21633 > fitmap #33 inMap #24
    21634 
    21635 Fit molecule copy of CopZ1_P61924.pdb (#33) to map postprocess_20231221.mrc
    21636 (#24) using 1420 atoms 
    21637 average map value = 0.003933, steps = 76 
    21638 shifted from previous position = 5.94 
    21639 rotated from previous position = 6.42 degrees 
    21640 atoms outside contour = 669, contour level = 0.0032978 
    21641  
    21642 Position of copy of CopZ1_P61924.pdb (#33) relative to
    21643 postprocess_20231221.mrc (#24) coordinates: 
    21644 Matrix rotation and translation 
    21645 0.16475049 -0.94009197 -0.29847006 230.52229673 
    21646 -0.38691226 0.21675387 -0.89627935 241.47790202 
    21647 0.90727955 0.26314418 -0.32802281 218.17037219 
    21648 Axis 0.65807298 -0.68436703 0.31397725 
    21649 Axis point 143.58778508 -0.00000000 249.38897644 
    21650 Rotation angle (degrees) 118.24606873 
    21651 Shift along axis 54.94151398 
    21652  
    21653 
    21654 > hide #33 models
    21655 
    21656 > show #34 models
    21657 
    21658 > fitmap #34 inMap #24
    21659 
    21660 Fit molecule copy of Golph3_ Q9CRA5.pdb (#34) to map postprocess_20231221.mrc
    21661 (#24) using 2367 atoms 
    21662 average map value = 0.0031, steps = 88 
    21663 shifted from previous position = 9.02 
    21664 rotated from previous position = 6.41 degrees 
    21665 atoms outside contour = 1383, contour level = 0.0032978 
    21666  
    21667 Position of copy of Golph3_ Q9CRA5.pdb (#34) relative to
    21668 postprocess_20231221.mrc (#24) coordinates: 
    21669 Matrix rotation and translation 
    21670 0.66108762 -0.23544106 0.71241186 198.02227460 
    21671 -0.68860963 -0.56744408 0.45146871 233.20913977 
    21672 0.29795962 -0.78903404 -0.53725724 191.32293326 
    21673 Axis -0.89619456 0.29941880 -0.32738920 
    21674 Axis point 0.00000000 180.08833448 -4.24101466 
    21675 Rotation angle (degrees) 136.20385961 
    21676 Shift along axis -170.27634703 
    21677  
    21678 
    21679 > hide #34 models
    21680 
    21681 > show #35 models
    21682 
    21683 > fitmap #35 inMap #24
    21684 
    21685 Fit molecule copy of CopZ2_Q9CTG7.pdb (#35) to map postprocess_20231221.mrc
    21686 (#24) using 1463 atoms 
    21687 average map value = 0.003943, steps = 76 
    21688 shifted from previous position = 6.08 
    21689 rotated from previous position = 6.44 degrees 
    21690 atoms outside contour = 720, contour level = 0.0032978 
    21691  
    21692 Position of copy of CopZ2_Q9CTG7.pdb (#35) relative to
    21693 postprocess_20231221.mrc (#24) coordinates: 
    21694 Matrix rotation and translation 
    21695 -0.81885698 0.29532139 -0.49219768 229.57861768 
    21696 0.42661204 0.88681622 -0.17764905 242.04930135 
    21697 0.38402532 -0.35544661 -0.85216330 217.25627407 
    21698 Axis -0.19675097 -0.96962927 0.14528637 
    21699 Axis point 59.03656762 0.00000000 149.01652041 
    21700 Rotation angle (degrees) 153.13858612 
    21701 Shift along axis -248.30352928 
    21702  
    21703 
    21704 > hide #35 models
    21705 
    21706 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    21707 > dataset/Chimera sessions/20240125_linkage_2_fitting.cxs"
    21708 
    21709 > hide #!24 models
    21710 
    21711 > show #!24 models
    21712 
    21713 > show #!16 models
    21714 
    21715 > show #!17 models
    21716 
    21717 > hide #!17 models
    21718 
    21719 > show #!25 models
    21720 
    21721 > hide #!25 models
    21722 
    21723 > show #!25 models
    21724 
    21725 > hide #!24 models
    21726 
    21727 > show #!37 models
    21728 
    21729 > show #!2 models
    21730 
    21731 > hide #!2 models
    21732 
    21733 > hide #!16 models
    21734 
    21735 > hide #!25 models
    21736 
    21737 > show #!36 models
    21738 
    21739 > select add #36
    21740 
    21741 2 models selected 
    21742 
    21743 > select add #38
    21744 
    21745 9810 atoms, 10032 bonds, 1233 residues, 3 models selected 
    21746 
    21747 > select add #39
    21748 
    21749 17311 atoms, 17651 bonds, 2186 residues, 4 models selected 
    21750 
    21751 > select add #40
    21752 
    21753 18768 atoms, 19134 bonds, 2367 residues, 5 models selected 
    21754 
    21755 > select add #41
    21756 
    21757 20225 atoms, 20617 bonds, 2548 residues, 6 models selected 
    21758 
    21759 > select add #42
    21760 
    21761 27439 atoms, 27990 bonds, 3453 residues, 7 models selected 
    21762 
    21763 > select add #43
    21764 
    21765 28901 atoms, 29471 bonds, 3632 residues, 8 models selected 
    21766 
    21767 > select add #44
    21768 
    21769 35574 atoms, 36257 bonds, 1 pseudobond, 4485 residues, 10 models selected 
    21770 
    21771 > select add #45
    21772 
    21773 36994 atoms, 37698 bonds, 1 pseudobond, 4662 residues, 11 models selected 
    21774 
    21775 > select add #46
    21776 
    21777 39361 atoms, 40096 bonds, 1 pseudobond, 4960 residues, 12 models selected 
    21778 
    21779 > select add #47
    21780 
    21781 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 13 models selected 
    21782 
    21783 > view matrix models
    21784 > #36,-0.30646,-0.94615,-0.10436,428.92,0.54097,-0.26333,0.79875,152.1,-0.78322,0.18832,0.59254,362.01,#38,-0.037217,-0.87154,0.48891,122.81,0.23648,0.46767,0.85168,366.41,-0.97092,0.14732,0.1887,422.69,#39,0.26132,-0.57917,-0.77219,164.06,-0.69745,-0.66634,0.26375,372.92,-0.66729,0.46964,-0.57807,404.78,#40,0.52778,0.74255,-0.41239,181.69,0.83267,-0.3565,0.42374,310.33,0.16763,-0.56703,-0.80646,406.23,#41,0.68427,-0.26654,0.67877,146.04,-0.13657,-0.96118,-0.23976,408.14,0.71632,0.071359,-0.69411,339.27,#42,0.16647,0.97979,0.11088,178.42,-0.87213,0.19877,-0.44709,397.9,-0.46009,-0.022274,0.88759,389.11,#43,0.72317,-0.33836,-0.60212,308.31,0.68009,0.19682,0.70621,451.73,-0.12045,-0.9202,0.37245,734.45,#44,-0.59861,0.65798,-0.45687,66.328,-0.4217,-0.74376,-0.51864,405.38,-0.68106,-0.1178,0.72269,393.38,#45,0.54534,0.56794,-0.61648,107.45,-0.56926,0.79078,0.22495,385.74,0.61526,0.22826,0.75456,356.26,#46,0.41891,0.69144,-0.58858,127.57,0.77647,-0.60882,-0.16258,350.66,-0.47075,-0.38891,-0.79192,364.19,#47,-0.19261,-0.89222,0.40847,106.89,-0.2483,-0.35841,-0.89994,386.1,0.94934,-0.27476,-0.15251,356.52
    21785 
    21786 > ui mousemode right "rotate selected models"
    21787 
    21788 > view matrix models
    21789 > #36,-0.68445,0.68576,-0.2475,239.5,-0.35539,-0.61024,-0.70803,758.89,-0.63658,-0.39665,0.66139,423.44,#38,-0.66512,0.086485,-0.74171,237.05,0.079164,-0.97951,-0.1852,382.68,-0.74252,-0.1819,0.64465,381.28,#39,0.068042,0.98166,-0.17808,205.84,0.786,-0.16268,-0.59644,414.74,-0.61447,-0.09939,-0.78265,389.23,#40,-0.75447,-0.33405,-0.56497,246.16,-0.13891,0.92256,-0.35997,465.14,0.64147,-0.19311,-0.74245,381.2,#41,0.19091,0.86663,-0.46098,152.95,0.41826,0.35303,0.83691,396.79,0.88804,-0.35259,-0.29508,336.91,#42,0.34544,-0.56524,0.74912,173.08,0.76513,0.63184,0.12393,414.75,-0.54337,0.53036,0.65074,390.84,#43,-0.87038,-0.48469,-0.086666,258.19,0.1745,-0.13907,-0.97479,392.9,0.46041,-0.86356,0.20562,753.21,#44,0.20986,0.22373,0.95179,216.02,-0.02883,0.97446,-0.22271,323.98,-0.97731,0.019296,0.21095,340.28,#45,0.5198,-0.70827,0.47766,194.48,0.5969,-0.098898,-0.7962,376.47,0.61116,0.69898,0.37135,324.95,#46,-0.99845,-0.031687,-0.045733,216.53,-0.024622,0.98875,-0.14753,410.68,0.049893,-0.14618,-0.988,331.4,#47,0.75776,0.49451,0.42575,194.58,-0.24129,-0.39387,0.88693,375.76,0.60629,-0.77481,-0.17914,324.99
    21790 
    21791 > ui mousemode right "translate selected models"
    21792 
    21793 > view matrix models
    21794 > #36,-0.68445,0.68576,-0.2475,264.07,-0.35539,-0.61024,-0.70803,585.08,-0.63658,-0.39665,0.66139,317.76,#38,-0.66512,0.086485,-0.74171,261.62,0.079164,-0.97951,-0.1852,208.87,-0.74252,-0.1819,0.64465,275.59,#39,0.068042,0.98166,-0.17808,230.41,0.786,-0.16268,-0.59644,240.93,-0.61447,-0.09939,-0.78265,283.54,#40,-0.75447,-0.33405,-0.56497,270.73,-0.13891,0.92256,-0.35997,291.33,0.64147,-0.19311,-0.74245,275.51,#41,0.19091,0.86663,-0.46098,177.52,0.41826,0.35303,0.83691,222.98,0.88804,-0.35259,-0.29508,231.22,#42,0.34544,-0.56524,0.74912,197.65,0.76513,0.63184,0.12393,240.94,-0.54337,0.53036,0.65074,285.15,#43,-0.87038,-0.48469,-0.086666,282.76,0.1745,-0.13907,-0.97479,219.09,0.46041,-0.86356,0.20562,647.52,#44,0.20986,0.22373,0.95179,240.58,-0.02883,0.97446,-0.22271,150.17,-0.97731,0.019296,0.21095,234.6,#45,0.5198,-0.70827,0.47766,219.04,0.5969,-0.098898,-0.7962,202.67,0.61116,0.69898,0.37135,219.27,#46,-0.99845,-0.031687,-0.045733,241.1,-0.024622,0.98875,-0.14753,236.88,0.049893,-0.14618,-0.988,225.72,#47,0.75776,0.49451,0.42575,219.15,-0.24129,-0.39387,0.88693,201.96,0.60629,-0.77481,-0.17914,219.31
    21795 
    21796 > view matrix models
    21797 > #36,-0.68445,0.68576,-0.2475,307.56,-0.35539,-0.61024,-0.70803,573.88,-0.63658,-0.39665,0.66139,321.66,#38,-0.66512,0.086485,-0.74171,305.11,0.079164,-0.97951,-0.1852,197.67,-0.74252,-0.1819,0.64465,279.5,#39,0.068042,0.98166,-0.17808,273.9,0.786,-0.16268,-0.59644,229.73,-0.61447,-0.09939,-0.78265,287.45,#40,-0.75447,-0.33405,-0.56497,314.22,-0.13891,0.92256,-0.35997,280.13,0.64147,-0.19311,-0.74245,279.42,#41,0.19091,0.86663,-0.46098,221.01,0.41826,0.35303,0.83691,211.78,0.88804,-0.35259,-0.29508,235.13,#42,0.34544,-0.56524,0.74912,241.14,0.76513,0.63184,0.12393,229.74,-0.54337,0.53036,0.65074,289.06,#43,-0.87038,-0.48469,-0.086666,326.25,0.1745,-0.13907,-0.97479,207.9,0.46041,-0.86356,0.20562,651.43,#44,0.20986,0.22373,0.95179,284.08,-0.02883,0.97446,-0.22271,138.97,-0.97731,0.019296,0.21095,238.51,#45,0.5198,-0.70827,0.47766,262.54,0.5969,-0.098898,-0.7962,191.47,0.61116,0.69898,0.37135,223.18,#46,-0.99845,-0.031687,-0.045733,284.59,-0.024622,0.98875,-0.14753,225.68,0.049893,-0.14618,-0.988,229.62,#47,0.75776,0.49451,0.42575,262.64,-0.24129,-0.39387,0.88693,190.76,0.60629,-0.77481,-0.17914,223.21
    21798 
    21799 > ui mousemode right "rotate selected models"
    21800 
    21801 > view matrix models
    21802 > #36,-0.33209,0.77442,-0.53851,271.48,-0.57183,-0.61933,-0.53799,589.35,-0.75015,0.12928,0.64851,251.4,#38,-0.25536,0.13315,-0.95763,278.3,-0.17872,-0.9799,-0.088585,216.46,-0.95018,0.14853,0.27403,316.39,#39,0.35938,0.91587,0.17899,247.73,0.607,-0.08374,-0.79027,246.2,-0.7088,0.39265,-0.58603,300.7,#40,-0.96634,-0.18593,-0.17783,288.66,-0.046133,0.80521,-0.59119,296.68,0.25311,-0.56309,-0.78668,297.95,#41,-0.21994,0.94151,-0.25531,223.74,0.64689,0.33666,0.68425,210.37,0.73018,-0.014662,-0.68309,237.47,#42,0.57403,-0.7268,0.37716,217.79,0.63267,0.68608,0.3592,243.35,-0.51983,0.032429,0.85365,287.61,#43,-0.97949,-0.045608,-0.19625,129.33,0.19787,-0.40139,-0.89428,322.82,-0.037987,-0.91477,0.40218,641.01,#44,0.62803,0.21681,0.74737,276.5,-0.25487,0.96474,-0.065694,147.48,-0.73527,-0.14923,0.66115,287.97,#45,0.20322,-0.95007,0.2368,265.62,0.78129,0.011578,-0.62405,191.94,0.59015,0.31183,0.74463,251.1,#46,-0.91347,0.064231,0.4018,283.29,-0.1107,0.91099,-0.3973,228.69,-0.39155,-0.40741,-0.82505,257.07,#47,0.3952,0.78057,0.48428,265.68,-0.002587,-0.52625,0.85033,191.28,0.91859,-0.3373,-0.20595,251.37
    21803 
    21804 > ui mousemode right "translate selected models"
    21805 
    21806 > view matrix models
    21807 > #36,-0.33209,0.77442,-0.53851,273.75,-0.57183,-0.61933,-0.53799,571.61,-0.75015,0.12928,0.64851,247.18,#38,-0.25536,0.13315,-0.95763,280.57,-0.17872,-0.9799,-0.088585,198.72,-0.95018,0.14853,0.27403,312.17,#39,0.35938,0.91587,0.17899,250.01,0.607,-0.08374,-0.79027,228.47,-0.7088,0.39265,-0.58603,296.48,#40,-0.96634,-0.18593,-0.17783,290.93,-0.046133,0.80521,-0.59119,278.94,0.25311,-0.56309,-0.78668,293.74,#41,-0.21994,0.94151,-0.25531,226.02,0.64689,0.33666,0.68425,192.64,0.73018,-0.014662,-0.68309,233.26,#42,0.57403,-0.7268,0.37716,220.07,0.63267,0.68608,0.3592,225.61,-0.51983,0.032429,0.85365,283.39,#43,-0.97949,-0.045608,-0.19625,131.61,0.19787,-0.40139,-0.89428,305.08,-0.037987,-0.91477,0.40218,636.79,#44,0.62803,0.21681,0.74737,278.78,-0.25487,0.96474,-0.065694,129.74,-0.73527,-0.14923,0.66115,283.76,#45,0.20322,-0.95007,0.2368,267.9,0.78129,0.011578,-0.62405,174.2,0.59015,0.31183,0.74463,246.89,#46,-0.91347,0.064231,0.4018,285.57,-0.1107,0.91099,-0.3973,210.96,-0.39155,-0.40741,-0.82505,252.86,#47,0.3952,0.78057,0.48428,267.96,-0.002587,-0.52625,0.85033,173.54,0.91859,-0.3373,-0.20595,247.16
    21808 
    21809 > view matrix models
    21810 > #36,-0.33209,0.77442,-0.53851,267.88,-0.57183,-0.61933,-0.53799,565.81,-0.75015,0.12928,0.64851,258.39,#38,-0.25536,0.13315,-0.95763,274.7,-0.17872,-0.9799,-0.088585,192.92,-0.95018,0.14853,0.27403,323.38,#39,0.35938,0.91587,0.17899,244.13,0.607,-0.08374,-0.79027,222.66,-0.7088,0.39265,-0.58603,307.69,#40,-0.96634,-0.18593,-0.17783,285.06,-0.046133,0.80521,-0.59119,273.14,0.25311,-0.56309,-0.78668,304.94,#41,-0.21994,0.94151,-0.25531,220.14,0.64689,0.33666,0.68425,186.83,0.73018,-0.014662,-0.68309,244.46,#42,0.57403,-0.7268,0.37716,214.19,0.63267,0.68608,0.3592,219.81,-0.51983,0.032429,0.85365,294.6,#43,-0.97949,-0.045608,-0.19625,125.73,0.19787,-0.40139,-0.89428,299.28,-0.037987,-0.91477,0.40218,648,#44,0.62803,0.21681,0.74737,272.9,-0.25487,0.96474,-0.065694,123.94,-0.73527,-0.14923,0.66115,294.96,#45,0.20322,-0.95007,0.2368,262.02,0.78129,0.011578,-0.62405,168.4,0.59015,0.31183,0.74463,258.09,#46,-0.91347,0.064231,0.4018,279.69,-0.1107,0.91099,-0.3973,205.15,-0.39155,-0.40741,-0.82505,264.06,#47,0.3952,0.78057,0.48428,262.08,-0.002587,-0.52625,0.85033,167.74,0.91859,-0.3373,-0.20595,258.36
    21811 
    21812 > view matrix models
    21813 > #36,-0.33209,0.77442,-0.53851,273.57,-0.57183,-0.61933,-0.53799,569.61,-0.75015,0.12928,0.64851,261.33,#38,-0.25536,0.13315,-0.95763,280.39,-0.17872,-0.9799,-0.088585,196.72,-0.95018,0.14853,0.27403,326.32,#39,0.35938,0.91587,0.17899,249.82,0.607,-0.08374,-0.79027,226.46,-0.7088,0.39265,-0.58603,310.63,#40,-0.96634,-0.18593,-0.17783,290.75,-0.046133,0.80521,-0.59119,276.93,0.25311,-0.56309,-0.78668,307.88,#41,-0.21994,0.94151,-0.25531,225.83,0.64689,0.33666,0.68425,190.63,0.73018,-0.014662,-0.68309,247.41,#42,0.57403,-0.7268,0.37716,219.88,0.63267,0.68608,0.3592,223.61,-0.51983,0.032429,0.85365,297.54,#43,-0.97949,-0.045608,-0.19625,131.42,0.19787,-0.40139,-0.89428,303.07,-0.037987,-0.91477,0.40218,650.94,#44,0.62803,0.21681,0.74737,278.59,-0.25487,0.96474,-0.065694,127.74,-0.73527,-0.14923,0.66115,297.91,#45,0.20322,-0.95007,0.2368,267.71,0.78129,0.011578,-0.62405,172.2,0.59015,0.31183,0.74463,261.03,#46,-0.91347,0.064231,0.4018,285.38,-0.1107,0.91099,-0.3973,208.95,-0.39155,-0.40741,-0.82505,267,#47,0.3952,0.78057,0.48428,267.77,-0.002587,-0.52625,0.85033,171.53,0.91859,-0.3373,-0.20595,261.3
    21814 
    21815 > ui mousemode right "rotate selected models"
    21816 
    21817 > view matrix models
    21818 > #36,0.093312,0.86488,-0.49323,146.31,-0.21567,-0.46607,-0.85806,526.72,-0.972,0.18644,0.14304,413.38,#38,0.091092,0.39627,-0.91361,255.1,0.23201,-0.90062,-0.3675,172.58,-0.96844,-0.17849,-0.17398,335.51,#39,0.32564,0.74623,0.58059,222.19,0.91482,-0.093551,-0.39287,200.42,-0.23886,0.65908,-0.71314,321.12,#40,-0.9294,-0.27219,0.24925,243.63,-0.3224,0.92748,-0.18931,252.83,-0.17964,-0.25631,-0.94976,353.11,#41,-0.6113,0.74662,-0.26242,229.67,0.19495,0.46344,0.86442,193.73,0.76701,0.47726,-0.42885,245.26,#42,0.45892,-0.88839,-0.012509,199.68,0.88836,0.45904,-0.0093881,198.71,0.014082,-0.0068042,0.99988,297.33,#43,-0.93933,0.34302,0.00011685,-4.311,0.020915,0.057615,-0.99812,92.075,-0.34238,-0.93756,-0.061294,590.68,#44,0.85492,-0.074664,0.51335,283.7,0.22034,0.94815,-0.22904,124.93,-0.46964,0.30893,0.82705,285.71,#45,-0.23316,-0.94969,0.20909,269.72,0.44918,-0.29589,-0.84302,178.67,0.86248,-0.10264,0.49557,266.43,#46,-0.68145,-0.12347,0.72138,272.15,-0.076401,0.99228,0.097667,211.11,-0.72787,0.011441,-0.68562,291.72,#47,0.10284,0.97005,0.22004,269.91,-0.35187,-0.17143,0.92021,177.97,0.93038,-0.17206,0.32371,266.43
    21819 
    21820 > view matrix models
    21821 > #36,-0.013617,0.67237,-0.74009,262.08,-0.46659,-0.65891,-0.59003,563.73,-0.88437,0.33728,0.32269,324.78,#38,0.12972,0.076397,-0.9886,247.4,-0.055809,-0.99488,-0.084205,185.79,-0.98998,0.066096,-0.12479,340.98,#39,0.59696,0.69661,0.39796,224.86,0.67235,-0.16377,-0.72189,218.3,-0.4377,0.69851,-0.56613,318.62,#40,-0.98908,0.035376,0.14307,263.19,-0.039286,0.87236,-0.48729,267.17,-0.14205,-0.48759,-0.86144,337.92,#41,-0.48947,0.87182,0.018493,227.28,0.56416,0.30042,0.76907,191.1,0.66494,0.38687,-0.63889,247.13,#42,0.72264,-0.69099,0.017855,202.25,0.66749,0.7043,0.24169,218.14,-0.17958,-0.16274,0.97019,294.87,#43,-0.89235,0.31226,-0.32589,-15.591,0.23763,-0.28882,-0.92742,258.68,-0.38372,-0.90503,0.18353,594.76,#44,0.8643,0.24731,0.43799,257.34,-0.18989,0.96677,-0.17117,120.75,-0.46576,0.064773,0.88254,305.76,#45,-0.046371,-0.99713,-0.059776,260.94,0.69813,0.010451,-0.71589,169.62,0.71447,-0.074928,0.69565,273.31,#46,-0.69278,0.20576,0.69117,274.6,-0.029393,0.94958,-0.31215,204.73,-0.72055,-0.23657,-0.65181,290.04,#47,0.013445,0.8557,0.5173,260.9,-0.12564,-0.5118,0.84987,168.93,0.99198,-0.076423,0.10063,273.5
    21822 
    21823 > ui mousemode right "translate selected models"
    21824 
    21825 > view matrix models
    21826 > #36,-0.013617,0.67237,-0.74009,272.84,-0.46659,-0.65891,-0.59003,545.17,-0.88437,0.33728,0.32269,323.96,#38,0.12972,0.076397,-0.9886,258.17,-0.055809,-0.99488,-0.084205,167.23,-0.98998,0.066096,-0.12479,340.16,#39,0.59696,0.69661,0.39796,235.63,0.67235,-0.16377,-0.72189,199.75,-0.4377,0.69851,-0.56613,317.8,#40,-0.98908,0.035376,0.14307,273.96,-0.039286,0.87236,-0.48729,248.62,-0.14205,-0.48759,-0.86144,337.1,#41,-0.48947,0.87182,0.018493,238.04,0.56416,0.30042,0.76907,172.54,0.66494,0.38687,-0.63889,246.31,#42,0.72264,-0.69099,0.017855,213.01,0.66749,0.7043,0.24169,199.58,-0.17958,-0.16274,0.97019,294.05,#43,-0.89235,0.31226,-0.32589,-4.8246,0.23763,-0.28882,-0.92742,240.13,-0.38372,-0.90503,0.18353,593.94,#44,0.8643,0.24731,0.43799,268.11,-0.18989,0.96677,-0.17117,102.2,-0.46576,0.064773,0.88254,304.94,#45,-0.046371,-0.99713,-0.059776,271.71,0.69813,0.010451,-0.71589,151.07,0.71447,-0.074928,0.69565,272.49,#46,-0.69278,0.20576,0.69117,285.36,-0.029393,0.94958,-0.31215,186.17,-0.72055,-0.23657,-0.65181,289.22,#47,0.013445,0.8557,0.5173,271.67,-0.12564,-0.5118,0.84987,150.38,0.99198,-0.076423,0.10063,272.68
    21827 
    21828 > ui mousemode right "rotate selected models"
    21829 
    21830 > view matrix models
    21831 > #36,-0.31277,0.41013,-0.85672,418.59,-0.65173,-0.74881,-0.12055,503.05,-0.69096,0.52064,0.5015,204.47,#38,-0.039786,-0.30025,-0.95303,263.36,-0.38312,-0.87631,0.29208,185.33,-0.92284,0.37674,-0.080167,339.65,#39,0.74135,0.67104,0.010192,252.05,0.2173,-0.22564,-0.94967,216.34,-0.63497,0.70625,-0.3131,308.41,#40,-0.93873,0.29735,-0.17426,308.39,0.32637,0.60448,-0.7267,248.75,-0.11075,-0.73904,-0.66449,310.8,#41,-0.14028,0.965,0.2216,233.99,0.87791,0.017741,0.4785,171.36,0.45782,0.26167,-0.84966,249.19,#42,0.89011,-0.38568,0.2428,228.03,0.23567,0.84552,0.47911,218.6,-0.39007,-0.36925,0.8435,286.2,#43,-0.77822,0.050011,-0.62599,85.89,0.45883,-0.63531,-0.62117,427.56,-0.42877,-0.77064,0.47147,560.35,#44,0.65315,0.60355,0.45731,242.77,-0.64802,0.75794,-0.074794,114.78,-0.39176,-0.24749,0.88616,326.72,#45,0.32267,-0.91784,-0.2312,260.2,0.82876,0.39196,-0.39941,146.52,0.45721,-0.062734,0.88714,280.42,#46,-0.74423,0.51729,0.42253,288.38,0.050028,0.674,-0.73703,176.24,-0.66604,-0.52739,-0.52749,285.02,#47,0.10176,0.57649,0.81074,259.92,0.16804,-0.81322,0.55716,145.99,0.98051,0.079539,-0.17963,280.82
    21832 
    21833 > view matrix models
    21834 > #36,-0.16023,0.74534,-0.64714,273.17,-0.59399,-0.59643,-0.53986,552.33,-0.78835,0.29789,0.53829,261.63,#38,-0.053073,0.12156,-0.99116,274.78,-0.20275,-0.9732,-0.1085,181,-0.97779,0.1952,0.076298,335.32,#39,0.48252,0.81862,0.3115,247.4,0.60306,-0.052581,-0.79596,209.64,-0.63522,0.57192,-0.51905,313.07,#40,-0.99636,-0.085208,-0.0013797,286.92,-0.066682,0.7896,-0.60998,261.11,0.053065,-0.60767,-0.79241,317.5,#41,-0.37774,0.91729,-0.12611,237.53,0.65423,0.36079,0.66469,172.04,0.65521,0.16858,-0.7364,247.15,#42,0.6537,-0.73304,0.18797,220.81,0.63778,0.66736,0.38454,205.77,-0.40733,-0.13149,0.90377,294.26,#43,-0.95544,0.14993,-0.25428,60.697,0.1715,-0.41918,-0.89156,289.38,-0.24026,-0.89544,0.37479,620.45,#44,0.7697,0.22149,0.59875,280.3,-0.25186,0.96717,-0.03401,111.49,-0.58663,-0.12462,0.80021,308.74,#45,0.062007,-0.99362,0.094178,276.17,0.79704,-0.0074975,-0.60388,154.96,0.60073,0.11251,0.79149,269.41,#46,-0.81226,0.12574,0.56958,291.45,-0.14168,0.90471,-0.40177,192.27,-0.56583,-0.40704,-0.71705,277.97,#47,0.20033,0.84411,0.49734,276.18,0.024602,-0.51181,0.85875,154.31,0.97942,-0.1598,-0.1233,269.7
    21835 
    21836 > ui mousemode right "translate selected models"
    21837 
    21838 > view matrix models
    21839 > #36,-0.16023,0.74534,-0.64714,267.12,-0.59399,-0.59643,-0.53986,565.33,-0.78835,0.29789,0.53829,260.86,#38,-0.053073,0.12156,-0.99116,268.74,-0.20275,-0.9732,-0.1085,194,-0.97779,0.1952,0.076298,334.55,#39,0.48252,0.81862,0.3115,241.35,0.60306,-0.052581,-0.79596,222.65,-0.63522,0.57192,-0.51905,312.31,#40,-0.99636,-0.085208,-0.0013797,280.87,-0.066682,0.7896,-0.60998,274.11,0.053065,-0.60767,-0.79241,316.73,#41,-0.37774,0.91729,-0.12611,231.49,0.65423,0.36079,0.66469,185.05,0.65521,0.16858,-0.7364,246.38,#42,0.6537,-0.73304,0.18797,214.77,0.63778,0.66736,0.38454,218.77,-0.40733,-0.13149,0.90377,293.49,#43,-0.95544,0.14993,-0.25428,54.652,0.1715,-0.41918,-0.89156,302.38,-0.24026,-0.89544,0.37479,619.69,#44,0.7697,0.22149,0.59875,274.25,-0.25186,0.96717,-0.03401,124.49,-0.58663,-0.12462,0.80021,307.98,#45,0.062007,-0.99362,0.094178,270.13,0.79704,-0.0074975,-0.60388,167.96,0.60073,0.11251,0.79149,268.64,#46,-0.81226,0.12574,0.56958,285.41,-0.14168,0.90471,-0.40177,205.27,-0.56583,-0.40704,-0.71705,277.21,#47,0.20033,0.84411,0.49734,270.14,0.024602,-0.51181,0.85875,167.31,0.97942,-0.1598,-0.1233,268.93
    21840 
    21841 > view matrix models
    21842 > #36,-0.16023,0.74534,-0.64714,282.03,-0.59399,-0.59643,-0.53986,563.36,-0.78835,0.29789,0.53829,263.36,#38,-0.053073,0.12156,-0.99116,283.64,-0.20275,-0.9732,-0.1085,192.03,-0.97779,0.1952,0.076298,337.05,#39,0.48252,0.81862,0.3115,256.26,0.60306,-0.052581,-0.79596,220.68,-0.63522,0.57192,-0.51905,314.81,#40,-0.99636,-0.085208,-0.0013797,295.78,-0.066682,0.7896,-0.60998,272.14,0.053065,-0.60767,-0.79241,319.23,#41,-0.37774,0.91729,-0.12611,246.4,0.65423,0.36079,0.66469,183.08,0.65521,0.16858,-0.7364,248.88,#42,0.6537,-0.73304,0.18797,229.68,0.63778,0.66736,0.38454,216.81,-0.40733,-0.13149,0.90377,295.99,#43,-0.95544,0.14993,-0.25428,69.559,0.1715,-0.41918,-0.89156,300.41,-0.24026,-0.89544,0.37479,622.19,#44,0.7697,0.22149,0.59875,289.16,-0.25186,0.96717,-0.03401,122.52,-0.58663,-0.12462,0.80021,310.48,#45,0.062007,-0.99362,0.094178,285.03,0.79704,-0.0074975,-0.60388,166,0.60073,0.11251,0.79149,271.14,#46,-0.81226,0.12574,0.56958,300.31,-0.14168,0.90471,-0.40177,203.3,-0.56583,-0.40704,-0.71705,279.71,#47,0.20033,0.84411,0.49734,285.05,0.024602,-0.51181,0.85875,165.34,0.97942,-0.1598,-0.1233,271.43
    21843 
    21844 > ui mousemode right "rotate selected models"
    21845 
    21846 > view matrix models
    21847 > #36,-0.19859,0.6822,-0.70368,315.42,-0.49522,-0.68943,-0.52863,555.3,-0.84576,0.2435,0.47475,301.12,#38,-0.052704,0.028797,-0.99819,281.85,-0.098661,-0.99484,-0.023492,179.93,-0.99372,0.097244,0.055273,336.99,#39,0.54736,0.79943,0.24761,257.62,0.61609,-0.18466,-0.76572,213.05,-0.56641,0.57168,-0.5936,317.48,#40,-0.99912,-0.0014639,-0.041801,301.56,0.020733,0.85064,-0.52534,259.95,0.036327,-0.52575,-0.84986,327.47,#41,-0.32904,0.94293,-0.051101,245.63,0.61787,0.2559,0.74347,183.27,0.71412,0.21306,-0.66681,248.01,#42,0.71663,-0.66666,0.20496,231.15,0.612,0.742,0.27367,213.54,-0.33452,-0.070681,0.93973,298.12,#43,-0.93114,0.12817,-0.34141,73.134,0.28212,-0.34004,-0.8971,278.71,-0.23107,-0.93164,0.28046,629.5,#44,0.75461,0.31088,0.57786,281.53,-0.26227,0.95014,-0.16866,113.19,-0.60148,-0.024281,0.79852,303.6,#45,0.12282,-0.99214,0.023796,282.12,0.72414,0.0732,-0.68576,160.56,0.67863,0.10146,0.72744,268.81,#46,-0.81088,0.21523,0.5442,300.57,-0.0089905,0.92522,-0.37932,195.26,-0.58515,-0.31248,-0.74831,281.25,#47,0.18309,0.79694,0.57565,282.07,-0.09161,-0.56917,0.8171,159.89,0.97882,-0.20234,-0.031202,269.03
    21848 
    21849 > ui mousemode right "translate selected models"
    21850 
    21851 > view matrix models
    21852 > #36,-0.19859,0.6822,-0.70368,306.31,-0.49522,-0.68943,-0.52863,542.7,-0.84576,0.2435,0.47475,307.53,#38,-0.052704,0.028797,-0.99819,272.74,-0.098661,-0.99484,-0.023492,167.33,-0.99372,0.097244,0.055273,343.41,#39,0.54736,0.79943,0.24761,248.5,0.61609,-0.18466,-0.76572,200.46,-0.56641,0.57168,-0.5936,323.9,#40,-0.99912,-0.0014639,-0.041801,292.45,0.020733,0.85064,-0.52534,247.35,0.036327,-0.52575,-0.84986,333.88,#41,-0.32904,0.94293,-0.051101,236.51,0.61787,0.2559,0.74347,170.68,0.71412,0.21306,-0.66681,254.43,#42,0.71663,-0.66666,0.20496,222.04,0.612,0.742,0.27367,200.95,-0.33452,-0.070681,0.93973,304.53,#43,-0.93114,0.12817,-0.34141,64.019,0.28212,-0.34004,-0.8971,266.11,-0.23107,-0.93164,0.28046,635.92,#44,0.75461,0.31088,0.57786,272.41,-0.26227,0.95014,-0.16866,100.6,-0.60148,-0.024281,0.79852,310.01,#45,0.12282,-0.99214,0.023796,273.01,0.72414,0.0732,-0.68576,147.97,0.67863,0.10146,0.72744,275.23,#46,-0.81088,0.21523,0.5442,291.45,-0.0089905,0.92522,-0.37932,182.66,-0.58515,-0.31248,-0.74831,287.66,#47,0.18309,0.79694,0.57565,272.95,-0.09161,-0.56917,0.8171,147.29,0.97882,-0.20234,-0.031202,275.45
    21853 
    21854 > ui mousemode right "rotate selected models"
    21855 
    21856 > view matrix models
    21857 > #36,-0.16756,0.78462,-0.59691,256.18,-0.69887,-0.52158,-0.48942,550.21,-0.69534,0.33515,0.63574,219.47,#38,-0.087126,0.17496,-0.98071,278.23,-0.33213,-0.93323,-0.13698,192.24,-0.9392,0.31379,0.13942,340.66,#39,0.42539,0.84483,0.32452,248.59,0.53263,0.056197,-0.84448,216.57,-0.73168,0.53208,-0.42607,316.28,#40,-0.98887,-0.14856,-0.0084755,285.85,-0.098837,0.69835,-0.7089,269.71,0.11123,-0.70017,-0.70526,311.99,#41,-0.37801,0.90623,-0.18933,237.55,0.71945,0.41626,0.55599,170.23,0.58267,0.073955,-0.80934,256.39,#42,0.60476,-0.76821,0.21005,221.4,0.60397,0.61431,0.50779,209.19,-0.51912,-0.18022,0.83548,299.49,#43,-0.97209,0.12912,-0.19589,72.273,0.099945,-0.52749,-0.84366,328.7,-0.21226,-0.83969,0.49987,619.66,#44,0.75363,0.17081,0.63471,285.76,-0.29621,0.95029,0.09597,120.1,-0.58677,-0.26033,0.76677,323.11,#45,0.051804,-0.98622,0.15711,277.89,0.87126,-0.032256,-0.48975,157.8,0.48807,0.16226,0.85759,278.71,#46,-0.82923,0.065573,0.55505,291.79,-0.24754,0.84729,-0.46991,196.49,-0.5011,-0.52706,-0.68637,281.57,#47,0.24238,0.8589,0.45116,277.94,0.16178,-0.4943,0.85411,157.19,0.9566,-0.13403,-0.25877,279.08
    21858 
    21859 > view matrix models
    21860 > #36,-0.081555,0.83063,-0.55082,217.11,-0.56608,-0.49347,-0.66033,551.03,-0.82031,0.25796,0.51045,290.98,#38,-0.037028,0.26874,-0.9625,275.38,-0.15317,-0.95331,-0.26028,180.61,-0.98751,0.13779,0.076461,343.05,#39,0.37715,0.82589,0.41913,243.68,0.70342,0.038945,-0.7097,206.02,-0.60246,0.56249,-0.56626,322.69,#40,-0.97425,-0.21162,0.077821,275.12,-0.21848,0.80072,-0.55778,262.5,0.055721,-0.56041,-0.82634,329.82,#41,-0.46133,0.85545,-0.23532,238.55,0.5522,0.48445,0.67852,171.13,0.69444,0.18308,-0.69587,254.77,#42,0.54465,-0.82654,0.14207,217.7,0.75061,0.55598,0.35703,199.26,-0.37408,-0.087817,0.92323,303.86,#43,-0.97389,0.19729,-0.11231,51.859,0.039252,-0.34092,-0.93927,239.4,-0.2236,-0.91915,0.32428,635.4,#44,0.78969,0.072388,0.60922,290.83,-0.10001,0.99492,0.01142,114.32,-0.6053,-0.069946,0.79292,312.47,#45,-0.048785,-0.97949,0.1955,279.65,0.76229,-0.16299,-0.62638,158.82,0.6454,0.11847,0.7546,275.74,#46,-0.79045,-0.017227,0.61229,289.3,-0.23007,0.93476,-0.27072,197.46,-0.56768,-0.35486,-0.74284,286.35,#47,0.20929,0.90864,0.36134,279.76,-0.00064692,-0.3694,0.92927,158.16,0.97785,-0.19472,-0.076723,275.99
    21861 
    21862 > ui mousemode right "translate selected models"
    21863 
    21864 > view matrix models
    21865 > #36,-0.081555,0.83063,-0.55082,214.5,-0.56608,-0.49347,-0.66033,546.37,-0.82031,0.25796,0.51045,283.6,#38,-0.037028,0.26874,-0.9625,272.77,-0.15317,-0.95331,-0.26028,175.95,-0.98751,0.13779,0.076461,335.67,#39,0.37715,0.82589,0.41913,241.07,0.70342,0.038945,-0.7097,201.36,-0.60246,0.56249,-0.56626,315.3,#40,-0.97425,-0.21162,0.077821,272.51,-0.21848,0.80072,-0.55778,257.85,0.055721,-0.56041,-0.82634,322.44,#41,-0.46133,0.85545,-0.23532,235.95,0.5522,0.48445,0.67852,166.47,0.69444,0.18308,-0.69587,247.39,#42,0.54465,-0.82654,0.14207,215.09,0.75061,0.55598,0.35703,194.6,-0.37408,-0.087817,0.92323,296.47,#43,-0.97389,0.19729,-0.11231,49.25,0.039252,-0.34092,-0.93927,234.75,-0.2236,-0.91915,0.32428,628.02,#44,0.78969,0.072388,0.60922,288.22,-0.10001,0.99492,0.01142,109.66,-0.6053,-0.069946,0.79292,305.09,#45,-0.048785,-0.97949,0.1955,277.04,0.76229,-0.16299,-0.62638,154.17,0.6454,0.11847,0.7546,268.36,#46,-0.79045,-0.017227,0.61229,286.69,-0.23007,0.93476,-0.27072,192.8,-0.56768,-0.35486,-0.74284,278.97,#47,0.20929,0.90864,0.36134,277.15,-0.00064692,-0.3694,0.92927,153.51,0.97785,-0.19472,-0.076723,268.61
    21866 
    21867 > fitmap #36 inMap #37
    21868 
    21869 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936
    21870 points 
    21871 correlation = 0.6638, correlation about mean = 0.3989, overlap = 19.86 
    21872 steps = 120, shift = 7.95, angle = 9.21 degrees 
    21873  
    21874 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    21875 (#37) coordinates: 
    21876 Matrix rotation and translation 
    21877 -0.53609396 -0.84407508 -0.01185528 402.27426069 
    21878 0.84374881 -0.53621844 0.02361709 56.07946034 
    21879 -0.02629162 0.00265811 0.99965079 -108.53618381 
    21880 Axis -0.01241634 0.00855226 0.99988634 
    21881 Axis point 184.79184089 138.62878392 0.00000000 
    21882 Rotation angle (degrees) 122.43420777 
    21883 Shift along axis -113.03901729 
    21884  
    21885 
    21886 > fitmap #36 inMap #37
    21887 
    21888 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936
    21889 points 
    21890 correlation = 0.6638, correlation about mean = 0.3989, overlap = 19.86 
    21891 steps = 120, shift = 7.95, angle = 9.21 degrees 
    21892  
    21893 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    21894 (#37) coordinates: 
    21895 Matrix rotation and translation 
    21896 -0.53609396 -0.84407508 -0.01185528 402.27426069 
    21897 0.84374881 -0.53621844 0.02361709 56.07946034 
    21898 -0.02629162 0.00265811 0.99965079 -108.53618381 
    21899 Axis -0.01241634 0.00855226 0.99988634 
    21900 Axis point 184.79184089 138.62878392 0.00000000 
    21901 Rotation angle (degrees) 122.43420777 
    21902 Shift along axis -113.03901729 
    21903  
    21904 
    21905 > fitmap #36 inMap #37
    21906 
    21907 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936
    21908 points 
    21909 correlation = 0.6638, correlation about mean = 0.3989, overlap = 19.86 
    21910 steps = 120, shift = 7.95, angle = 9.21 degrees 
    21911  
    21912 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    21913 (#37) coordinates: 
    21914 Matrix rotation and translation 
    21915 -0.53609396 -0.84407508 -0.01185528 402.27426069 
    21916 0.84374881 -0.53621844 0.02361709 56.07946034 
    21917 -0.02629162 0.00265811 0.99965079 -108.53618381 
    21918 Axis -0.01241634 0.00855226 0.99988634 
    21919 Axis point 184.79184089 138.62878392 0.00000000 
    21920 Rotation angle (degrees) 122.43420777 
    21921 Shift along axis -113.03901729 
    21922  
    21923 
    21924 > ui mousemode right "rotate selected models"
    21925 
    21926 > view matrix models
    21927 > #36,-0.065537,0.95596,-0.28609,128.98,-0.68929,-0.25068,-0.67973,533.55,-0.72151,0.15265,0.67536,244.22,#38,-0.15019,0.51269,-0.84533,283.8,-0.30757,-0.83683,-0.45289,197.9,-0.9396,0.19198,0.28338,325.99,#39,0.095098,0.86759,0.4881,244.08,0.66844,0.30769,-0.67714,212.18,-0.73766,0.39066,-0.55067,309.15,#40,-0.87005,-0.48575,0.08401,261.39,-0.41845,0.63764,-0.64678,274.65,0.26061,-0.59788,-0.75804,303.88,#41,-0.47001,0.72786,-0.49931,237.27,0.53583,0.68481,0.49388,167,0.70141,-0.035423,-0.71188,247.76,#42,0.27905,-0.94115,0.1907,217.97,0.78625,0.33794,0.51731,196.99,-0.55132,0.0055821,0.83428,296.38,#43,-0.97614,0.13073,0.17337,100.57,-0.2132,-0.42571,-0.87938,249.75,-0.041162,-0.89537,0.44343,646.33,#44,0.68688,-0.186,0.70257,310.16,-0.013747,0.9632,0.26844,132.8,-0.72664,-0.19404,0.65905,300.74,#45,-0.1344,-0.87902,0.45746,282.85,0.8223,-0.35654,-0.44351,167.52,0.55295,0.31656,0.77074,261.96,#46,-0.78751,-0.30094,0.53783,284.24,-0.48461,0.84153,-0.23871,208.49,-0.38077,-0.44862,-0.80855,266.15,#47,0.35135,0.93027,0.10561,283.16,0.19632,-0.1835,0.96322,166.94,0.91543,-0.31769,-0.2471,262.26
    21928 
    21929 > fitmap #36 inMap #37
    21930 
    21931 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936
    21932 points 
    21933 correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 
    21934 steps = 156, shift = 4.54, angle = 14.5 degrees 
    21935  
    21936 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    21937 (#37) coordinates: 
    21938 Matrix rotation and translation 
    21939 -0.53620908 -0.84400250 -0.01181641 402.28711030 
    21940 0.84367320 -0.53633217 0.02373510 56.06758820 
    21941 -0.02637001 0.00275779 0.99964846 -108.51146781 
    21942 Axis -0.01242828 0.00862247 0.99988559 
    21943 Axis point 184.80143895 138.61200459 0.00000000 
    21944 Rotation angle (degrees) 122.44205518 
    21945 Shift along axis -113.01535017 
    21946  
    21947 
    21948 > fitmap #36 inMap #37
    21949 
    21950 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936
    21951 points 
    21952 correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 
    21953 steps = 156, shift = 4.54, angle = 14.5 degrees 
    21954  
    21955 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    21956 (#37) coordinates: 
    21957 Matrix rotation and translation 
    21958 -0.53620908 -0.84400250 -0.01181641 402.28711030 
    21959 0.84367320 -0.53633217 0.02373510 56.06758820 
    21960 -0.02637001 0.00275779 0.99964846 -108.51146781 
    21961 Axis -0.01242828 0.00862247 0.99988559 
    21962 Axis point 184.80143895 138.61200459 0.00000000 
    21963 Rotation angle (degrees) 122.44205518 
    21964 Shift along axis -113.01535017 
    21965  
    21966 
    21967 > ui mousemode right "translate selected models"
    21968 
    21969 > view matrix models
    21970 > #36,-0.065537,0.95596,-0.28609,132.48,-0.68929,-0.25068,-0.67973,535.05,-0.72151,0.15265,0.67536,246.35,#38,-0.15019,0.51269,-0.84533,287.3,-0.30757,-0.83683,-0.45289,199.4,-0.9396,0.19198,0.28338,328.12,#39,0.095098,0.86759,0.4881,247.58,0.66844,0.30769,-0.67714,213.68,-0.73766,0.39066,-0.55067,311.28,#40,-0.87005,-0.48575,0.08401,264.89,-0.41845,0.63764,-0.64678,276.15,0.26061,-0.59788,-0.75804,306.01,#41,-0.47001,0.72786,-0.49931,240.76,0.53583,0.68481,0.49388,168.5,0.70141,-0.035423,-0.71188,249.89,#42,0.27905,-0.94115,0.1907,221.47,0.78625,0.33794,0.51731,198.5,-0.55132,0.0055821,0.83428,298.51,#43,-0.97614,0.13073,0.17337,104.06,-0.2132,-0.42571,-0.87938,251.25,-0.041162,-0.89537,0.44343,648.46,#44,0.68688,-0.186,0.70257,313.65,-0.013747,0.9632,0.26844,134.31,-0.72664,-0.19404,0.65905,302.88,#45,-0.1344,-0.87902,0.45746,286.35,0.8223,-0.35654,-0.44351,169.02,0.55295,0.31656,0.77074,264.09,#46,-0.78751,-0.30094,0.53783,287.73,-0.48461,0.84153,-0.23871,210,-0.38077,-0.44862,-0.80855,268.29,#47,0.35135,0.93027,0.10561,286.66,0.19632,-0.1835,0.96322,168.45,0.91543,-0.31769,-0.2471,264.39
    21971 
    21972 > ui mousemode right "rotate selected models"
    21973 
    21974 > view matrix models
    21975 > #36,-0.050417,0.98638,-0.15654,94.782,-0.69213,-0.1475,-0.70654,522,-0.72001,0.072722,0.69014,257.94,#38,-0.19253,0.61249,-0.76668,290.47,-0.32152,-0.77754,-0.54042,204.72,-0.92712,0.14246,0.34663,323.93,#39,-0.036605,0.85889,0.51084,248.23,0.675,0.3982,-0.62114,214.69,-0.73691,0.32208,-0.59433,310.48,#40,-0.79668,-0.59762,0.090311,258.32,-0.5088,0.58247,-0.63392,278.66,0.32624,-0.55098,-0.76811,304.39,#41,-0.46567,0.64579,-0.60507,241.28,0.48251,0.75844,0.43812,169.07,0.74184,-0.087932,-0.66479,249.44,#42,0.14833,-0.96812,0.20187,222.92,0.81166,0.23579,0.53442,196.82,-0.56498,0.084577,0.82076,299.72,#43,-0.94811,0.102,0.30114,129.4,-0.31592,-0.40909,-0.85606,236.67,0.035873,-0.90678,0.42008,658.47,#44,0.62315,-0.3023,0.72131,321.45,0.059705,0.93798,0.34152,142.81,-0.77982,-0.16975,0.60255,296.06,#45,-0.17553,-0.80759,0.56302,287.55,0.80314,-0.44822,-0.39251,174.43,0.56934,0.38329,0.72728,259.92,#46,-0.75995,-0.42398,0.49266,284.92,-0.5656,0.80484,-0.17982,215.32,-0.32027,-0.4153,-0.85144,264.35,#47,0.40173,0.91559,-0.017617,287.94,0.23233,-0.083291,0.96906,173.9,0.8858,-0.39339,-0.24618,260.18
    21976 
    21977 > fitmap #36 inMap #37
    21978 
    21979 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936
    21980 points 
    21981 correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 
    21982 steps = 220, shift = 7.58, angle = 21.8 degrees 
    21983  
    21984 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    21985 (#37) coordinates: 
    21986 Matrix rotation and translation 
    21987 -0.53607361 -0.84408781 -0.01186894 402.29604491 
    21988 0.84376073 -0.53619838 0.02364655 56.04641062 
    21989 -0.02632388 0.00266175 0.99964993 -108.50518664 
    21990 Axis -0.01243145 0.00856314 0.99988606 
    21991 Axis point 184.81046621 138.62140563 0.00000000 
    21992 Rotation angle (degrees) 122.43286561 
    21993 Shift along axis -113.01401480 
    21994  
    21995 
    21996 > fitmap #36 inMap #37
    21997 
    21998 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936
    21999 points 
    22000 correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 
    22001 steps = 220, shift = 7.58, angle = 21.8 degrees 
    22002  
    22003 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    22004 (#37) coordinates: 
    22005 Matrix rotation and translation 
    22006 -0.53607361 -0.84408781 -0.01186894 402.29604491 
    22007 0.84376073 -0.53619838 0.02364655 56.04641062 
    22008 -0.02632388 0.00266175 0.99964993 -108.50518664 
    22009 Axis -0.01243145 0.00856314 0.99988606 
    22010 Axis point 184.81046621 138.62140563 0.00000000 
    22011 Rotation angle (degrees) 122.43286561 
    22012 Shift along axis -113.01401480 
    22013  
    22014 
    22015 > fitmap #36 inMap #37
    22016 
    22017 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936
    22018 points 
    22019 correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 
    22020 steps = 220, shift = 7.58, angle = 21.8 degrees 
    22021  
    22022 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    22023 (#37) coordinates: 
    22024 Matrix rotation and translation 
    22025 -0.53607361 -0.84408781 -0.01186894 402.29604491 
    22026 0.84376073 -0.53619838 0.02364655 56.04641062 
    22027 -0.02632388 0.00266175 0.99964993 -108.50518664 
    22028 Axis -0.01243145 0.00856314 0.99988606 
    22029 Axis point 184.81046621 138.62140563 0.00000000 
    22030 Rotation angle (degrees) 122.43286561 
    22031 Shift along axis -113.01401480 
    22032  
    22033 
    22034 > view matrix models
    22035 > #36,-0.11403,0.90821,-0.40267,178.49,-0.69628,-0.36218,-0.6197,544.72,-0.70866,0.20971,0.67367,232.87,#38,-0.13921,0.39392,-0.90854,285.89,-0.31342,-0.88784,-0.33692,195.01,-0.93936,0.23785,0.24706,330.28,#39,0.21519,0.8781,0.42735,249.17,0.63027,0.20939,-0.74761,213.59,-0.74596,0.43023,-0.50838,311,#40,-0.92758,-0.37134,0.041313,274.37,-0.30035,0.67533,-0.67359,273.28,0.22223,-0.63721,-0.73795,305.3,#41,-0.43473,0.80839,-0.39688,239.92,0.60951,0.58854,0.53114,167.86,0.66295,-0.010997,-0.74858,250.33,#42,0.40264,-0.89074,0.21087,222.05,0.72977,0.45143,0.51347,201.39,-0.55256,-0.052859,0.8318,297.17,#43,-0.99172,0.12217,0.039548,94.434,-0.092294,-0.46398,-0.88102,278.19,-0.089289,-0.87738,0.47141,639,#44,0.71599,-0.054344,0.69599,305.18,-0.11909,0.97284,0.19847,126.47,-0.68788,-0.22499,0.69008,307.93,#45,-0.0589,-0.9316,0.35867,284.42,0.84805,-0.23624,-0.47433,163.16,0.52663,0.27624,0.80396,266.97,#46,-0.8213,-0.17042,0.54444,290.69,-0.39449,0.85906,-0.3262,203.76,-0.41212,-0.48268,-0.77277,270.33,#47,0.3259,0.91513,0.23732,284.65,0.17756,-0.3058,0.93539,162.56,0.92858,-0.2627,-0.26215,267.3
    22036 
    22037 > view matrix models
    22038 > #36,0.013272,0.97765,-0.20983,93.112,-0.69251,-0.14239,-0.70721,521.27,-0.72128,0.1547,0.67515,245.96,#38,-0.11301,0.60248,-0.79009,284.25,-0.32269,-0.77434,-0.54431,205.02,-0.93973,0.19345,0.28192,328.21,#39,0.02142,0.82703,0.56174,243.22,0.67466,0.4027,-0.6186,214.77,-0.73782,0.39224,-0.54934,311.29,#40,-0.81845,-0.55265,0.15722,253.46,-0.51285,0.57927,-0.63359,278.78,0.25908,-0.59919,-0.75753,306.02,#41,-0.52831,0.64696,-0.54985,241.62,0.48024,0.76175,0.43486,169.1,0.70019,-0.034323,-0.71313,249.9,#42,0.19069,-0.97299,0.13007,218.99,0.81231,0.2308,0.53561,196.76,-0.55117,0.0035211,0.83439,298.47,#43,-0.94617,0.17926,0.26951,95.719,-0.32081,-0.40873,-0.85441,236.19,-0.043005,-0.89488,0.44423,648.16,#44,0.68561,-0.29193,0.66687,317.76,0.062778,0.93637,0.34536,143.27,-0.72525,-0.19492,0.66031,303.06,#45,-0.22646,-0.83438,0.50251,286.83,0.80233,-0.45231,-0.38946,174.7,0.55225,0.31499,0.77188,264.2,#46,-0.72773,-0.39205,0.56277,283.62,-0.56958,0.80256,-0.17743,215.58,-0.38209,-0.44966,-0.80735,268.37,#47,0.32537,0.94558,-0.0020339,287.2,0.23457,-0.07863,0.96891,174.17,0.91603,-0.31573,-0.24739,264.5
    22039 
    22040 > view matrix models
    22041 > #36,-0.14951,0.80671,-0.57173,243.12,-0.64566,-0.51758,-0.56146,549.54,-0.74885,0.28519,0.59824,244.51,#38,-0.085158,0.21226,-0.9735,279.51,-0.25753,-0.94853,-0.18429,183.96,-0.96251,0.23501,0.13544,335.84,#39,0.39772,0.84795,0.35044,248.74,0.60592,0.044072,-0.7943,209.08,-0.68897,0.52825,-0.49626,313.76,#40,-0.98334,-0.18151,0.0097117,283.99,-0.14431,0.74705,-0.64892,263.74,0.11053,-0.63951,-0.76079,313.54,#41,-0.39763,0.89121,-0.21826,238.75,0.65502,0.44229,0.61264,167.39,0.64252,0.10064,-0.75963,250.37,#42,0.57666,-0.79201,0.20047,221.66,0.66634,0.59793,0.44551,202.08,-0.47271,-0.12333,0.87255,296.64,#43,-0.97733,0.13913,-0.15956,71.763,0.080654,-0.45217,-0.88828,289.48,-0.19574,-0.88101,0.4307,626.67,#44,0.75751,0.13321,0.63908,289.48,-0.21917,0.97404,0.056749,113.82,-0.61493,-0.18306,0.76704,312.39,#45,0.025308,-0.98257,0.18417,279.75,0.82993,-0.08205,-0.55179,154.69,0.55729,0.16681,0.81339,271.28,#46,-0.82505,0.028912,0.56432,292.27,-0.23659,0.88926,-0.39146,193.51,-0.51315,-0.45648,-0.72685,277.19,#47,0.2467,0.87484,0.41689,279.84,0.092232,-0.44943,0.88854,154.05,0.96469,-0.18076,-0.19156,271.6
    22042 
    22043 > fitmap #36 inMap #37
    22044 
    22045 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936
    22046 points 
    22047 correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 
    22048 steps = 116, shift = 10.7, angle = 6.02 degrees 
    22049  
    22050 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    22051 (#37) coordinates: 
    22052 Matrix rotation and translation 
    22053 -0.53604611 -0.84410513 -0.01187962 402.29755272 
    22054 0.84377740 -0.53617111 0.02366990 56.02829232 
    22055 -0.02634940 0.00266441 0.99964925 -108.49711526 
    22056 Axis -0.01244346 0.00857176 0.99988584 
    22057 Axis point 184.81473908 138.61703908 0.00000000 
    22058 Rotation angle (degrees) 122.43102963 
    22059 Shift along axis -113.01044181 
    22060  
    22061 
    22062 > fitmap #36 inMap #37
    22063 
    22064 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936
    22065 points 
    22066 correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 
    22067 steps = 116, shift = 10.7, angle = 6.02 degrees 
    22068  
    22069 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    22070 (#37) coordinates: 
    22071 Matrix rotation and translation 
    22072 -0.53604611 -0.84410513 -0.01187962 402.29755272 
    22073 0.84377740 -0.53617111 0.02366990 56.02829232 
    22074 -0.02634940 0.00266441 0.99964925 -108.49711526 
    22075 Axis -0.01244346 0.00857176 0.99988584 
    22076 Axis point 184.81473908 138.61703908 0.00000000 
    22077 Rotation angle (degrees) 122.43102963 
    22078 Shift along axis -113.01044181 
    22079  
    22080 
    22081 > fitmap #36 inMap #37
    22082 
    22083 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936
    22084 points 
    22085 correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 
    22086 steps = 116, shift = 10.7, angle = 6.02 degrees 
    22087  
    22088 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    22089 (#37) coordinates: 
    22090 Matrix rotation and translation 
    22091 -0.53604611 -0.84410513 -0.01187962 402.29755272 
    22092 0.84377740 -0.53617111 0.02366990 56.02829232 
    22093 -0.02634940 0.00266441 0.99964925 -108.49711526 
    22094 Axis -0.01244346 0.00857176 0.99988584 
    22095 Axis point 184.81473908 138.61703908 0.00000000 
    22096 Rotation angle (degrees) 122.43102963 
    22097 Shift along axis -113.01044181 
    22098  
    22099 
    22100 > fitmap #36 inMap #37
    22101 
    22102 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936
    22103 points 
    22104 correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 
    22105 steps = 116, shift = 10.7, angle = 6.02 degrees 
    22106  
    22107 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    22108 (#37) coordinates: 
    22109 Matrix rotation and translation 
    22110 -0.53604611 -0.84410513 -0.01187962 402.29755272 
    22111 0.84377740 -0.53617111 0.02366990 56.02829232 
    22112 -0.02634940 0.00266441 0.99964925 -108.49711526 
    22113 Axis -0.01244346 0.00857176 0.99988584 
    22114 Axis point 184.81473908 138.61703908 0.00000000 
    22115 Rotation angle (degrees) 122.43102963 
    22116 Shift along axis -113.01044181 
    22117  
    22118 
    22119 > fitmap #36 inMap #37
    22120 
    22121 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936
    22122 points 
    22123 correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 
    22124 steps = 116, shift = 10.7, angle = 6.02 degrees 
    22125  
    22126 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    22127 (#37) coordinates: 
    22128 Matrix rotation and translation 
    22129 -0.53604611 -0.84410513 -0.01187962 402.29755272 
    22130 0.84377740 -0.53617111 0.02366990 56.02829232 
    22131 -0.02634940 0.00266441 0.99964925 -108.49711526 
    22132 Axis -0.01244346 0.00857176 0.99988584 
    22133 Axis point 184.81473908 138.61703908 0.00000000 
    22134 Rotation angle (degrees) 122.43102963 
    22135 Shift along axis -113.01044181 
    22136  
    22137 
    22138 > fitmap #36 inMap #37
    22139 
    22140 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936
    22141 points 
    22142 correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 
    22143 steps = 116, shift = 10.7, angle = 6.02 degrees 
    22144  
    22145 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    22146 (#37) coordinates: 
    22147 Matrix rotation and translation 
    22148 -0.53604611 -0.84410513 -0.01187962 402.29755272 
    22149 0.84377740 -0.53617111 0.02366990 56.02829232 
    22150 -0.02634940 0.00266441 0.99964925 -108.49711526 
    22151 Axis -0.01244346 0.00857176 0.99988584 
    22152 Axis point 184.81473908 138.61703908 0.00000000 
    22153 Rotation angle (degrees) 122.43102963 
    22154 Shift along axis -113.01044181 
    22155  
    22156 
    22157 > fitmap #36 inMap #37
    22158 
    22159 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936
    22160 points 
    22161 correlation = 0.6638, correlation about mean = 0.3988, overlap = 19.85 
    22162 steps = 116, shift = 10.7, angle = 6.02 degrees 
    22163  
    22164 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    22165 (#37) coordinates: 
    22166 Matrix rotation and translation 
    22167 -0.53604611 -0.84410513 -0.01187962 402.29755272 
    22168 0.84377740 -0.53617111 0.02366990 56.02829232 
    22169 -0.02634940 0.00266441 0.99964925 -108.49711526 
    22170 Axis -0.01244346 0.00857176 0.99988584 
    22171 Axis point 184.81473908 138.61703908 0.00000000 
    22172 Rotation angle (degrees) 122.43102963 
    22173 Shift along axis -113.01044181 
    22174  
    22175 
    22176 > ui mousemode right "translate selected models"
    22177 
    22178 > view matrix models
    22179 > #36,-0.14951,0.80671,-0.57173,238.38,-0.64566,-0.51758,-0.56146,549.39,-0.74885,0.28519,0.59824,244.73,#38,-0.085158,0.21226,-0.9735,274.78,-0.25753,-0.94853,-0.18429,183.8,-0.96251,0.23501,0.13544,336.05,#39,0.39772,0.84795,0.35044,244,0.60592,0.044072,-0.7943,208.93,-0.68897,0.52825,-0.49626,313.98,#40,-0.98334,-0.18151,0.0097117,279.25,-0.14431,0.74705,-0.64892,263.59,0.11053,-0.63951,-0.76079,313.75,#41,-0.39763,0.89121,-0.21826,234.01,0.65502,0.44229,0.61264,167.24,0.64252,0.10064,-0.75963,250.58,#42,0.57666,-0.79201,0.20047,216.92,0.66634,0.59793,0.44551,201.93,-0.47271,-0.12333,0.87255,296.85,#43,-0.97733,0.13913,-0.15956,67.025,0.080654,-0.45217,-0.88828,289.33,-0.19574,-0.88101,0.4307,626.89,#44,0.75751,0.13321,0.63908,284.74,-0.21917,0.97404,0.056749,113.67,-0.61493,-0.18306,0.76704,312.6,#45,0.025308,-0.98257,0.18417,275.02,0.82993,-0.08205,-0.55179,154.54,0.55729,0.16681,0.81339,271.5,#46,-0.82505,0.028912,0.56432,287.53,-0.23659,0.88926,-0.39146,193.36,-0.51315,-0.45648,-0.72685,277.4,#47,0.2467,0.87484,0.41689,275.1,0.092232,-0.44943,0.88854,153.9,0.96469,-0.18076,-0.19156,271.82
    22180 
    22181 > fitmap #36 inMap #37
    22182 
    22183 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936
    22184 points 
    22185 correlation = 0.6638, correlation about mean = 0.3989, overlap = 19.86 
    22186 steps = 100, shift = 9.01, angle = 6.01 degrees 
    22187  
    22188 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    22189 (#37) coordinates: 
    22190 Matrix rotation and translation 
    22191 -0.53613146 -0.84405165 -0.01182794 402.27530857 
    22192 0.84372460 -0.53625512 0.02364888 56.08871721 
    22193 -0.02630367 0.00269939 0.99965036 -108.53812129 
    22194 Axis -0.01241107 0.00857583 0.99988620 
    22195 Axis point 184.79018629 138.62940526 0.00000000 
    22196 Rotation angle (degrees) 122.43674034 
    22197 Shift along axis -113.03742918 
    22198  
    22199 
    22200 > fitmap #36 inMap #37
    22201 
    22202 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936
    22203 points 
    22204 correlation = 0.6638, correlation about mean = 0.3989, overlap = 19.86 
    22205 steps = 100, shift = 9.01, angle = 6.01 degrees 
    22206  
    22207 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    22208 (#37) coordinates: 
    22209 Matrix rotation and translation 
    22210 -0.53613146 -0.84405165 -0.01182794 402.27530857 
    22211 0.84372460 -0.53625512 0.02364888 56.08871721 
    22212 -0.02630367 0.00269939 0.99965036 -108.53812129 
    22213 Axis -0.01241107 0.00857583 0.99988620 
    22214 Axis point 184.79018629 138.62940526 0.00000000 
    22215 Rotation angle (degrees) 122.43674034 
    22216 Shift along axis -113.03742918 
    22217  
    22218 
    22219 > fitmap #36 inMap #37
    22220 
    22221 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936
    22222 points 
    22223 correlation = 0.6638, correlation about mean = 0.3989, overlap = 19.86 
    22224 steps = 100, shift = 9.01, angle = 6.01 degrees 
    22225  
    22226 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    22227 (#37) coordinates: 
    22228 Matrix rotation and translation 
    22229 -0.53613146 -0.84405165 -0.01182794 402.27530857 
    22230 0.84372460 -0.53625512 0.02364888 56.08871721 
    22231 -0.02630367 0.00269939 0.99965036 -108.53812129 
    22232 Axis -0.01241107 0.00857583 0.99988620 
    22233 Axis point 184.79018629 138.62940526 0.00000000 
    22234 Rotation angle (degrees) 122.43674034 
    22235 Shift along axis -113.03742918 
    22236  
    22237 
    22238 > fitmap #36 inMap #37
    22239 
    22240 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 41936
    22241 points 
    22242 correlation = 0.6638, correlation about mean = 0.399, overlap = 19.86 
    22243 steps = 44, shift = 0.00723, angle = 0.00449 degrees 
    22244  
    22245 Position of postprocess_20231221.mrc (#36) relative to emd_3720_2017_leaf.map
    22246 (#37) coordinates: 
    22247 Matrix rotation and translation 
    22248 -0.53615244 -0.84403825 -0.01183341 402.28427282 
    22249 0.84371314 -0.53627643 0.02357444 56.11035694 
    22250 -0.02624370 0.00265549 0.99965206 -108.53922466 
    22251 Axis -0.01239316 0.00853720 0.99988676 
    22252 Axis point 184.79135404 138.63796538 0.00000000 
    22253 Rotation angle (degrees) 122.43811842 
    22254 Shift along axis -113.03348140 
    22255  
    22256 
    22257 > select subtract #36
    22258 
    22259 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 11 models selected 
    22260 
    22261 > select subtract #38
    22262 
    22263 31014 atoms, 31550 bonds, 1 pseudobond, 3912 residues, 10 models selected 
    22264 
    22265 > select subtract #39
    22266 
    22267 23513 atoms, 23931 bonds, 1 pseudobond, 2959 residues, 9 models selected 
    22268 
    22269 > select subtract #40
    22270 
    22271 22056 atoms, 22448 bonds, 1 pseudobond, 2778 residues, 8 models selected 
    22272 
    22273 > hide #!37 models
    22274 
    22275 > select subtract #41
    22276 
    22277 20599 atoms, 20965 bonds, 1 pseudobond, 2597 residues, 7 models selected 
    22278 
    22279 > select subtract #42
    22280 
    22281 13385 atoms, 13592 bonds, 1 pseudobond, 1692 residues, 6 models selected 
    22282 
    22283 > select subtract #43
    22284 
    22285 11923 atoms, 12111 bonds, 1 pseudobond, 1513 residues, 5 models selected 
    22286 
    22287 > select subtract #44
    22288 
    22289 5250 atoms, 5325 bonds, 660 residues, 3 models selected 
    22290 
    22291 > select subtract #45
    22292 
    22293 3830 atoms, 3884 bonds, 483 residues, 2 models selected 
    22294 
    22295 > select subtract #46
    22296 
    22297 1463 atoms, 1486 bonds, 185 residues, 1 model selected 
    22298 
    22299 > select subtract #47
    22300 
    22301 Nothing selected 
    22302 
    22303 > show #38 models
    22304 
    22305 > fitmap #38 inMap #36
    22306 
    22307 Fit molecule copy of CopA_F8WHL2.pdb (#38) to map postprocess_20231221.mrc
    22308 (#36) using 9810 atoms 
    22309 average map value = 0.001845, steps = 100 
    22310 shifted from previous position = 13.2 
    22311 rotated from previous position = 6.01 degrees 
    22312 atoms outside contour = 7364, contour level = 0.0030265 
    22313  
    22314 Position of copy of CopA_F8WHL2.pdb (#38) relative to postprocess_20231221.mrc
    22315 (#36) coordinates: 
    22316 Matrix rotation and translation 
    22317 0.89962787 0.40507870 0.16303658 162.22050948 
    22318 -0.21016116 0.72895774 -0.65150049 244.61856024 
    22319 -0.38275575 0.55184404 0.74092251 239.08858201 
    22320 Axis 0.82559489 0.37445914 -0.42210595 
    22321 Axis point 0.00000000 -322.85722656 438.16719469 
    22322 Rotation angle (degrees) 46.78373091 
    22323 Shift along axis 124.60736685 
    22324  
    22325 
    22326 > hide #38 models
    22327 
    22328 > show #39 models
    22329 
    22330 > fitmap #39 inMap #36
    22331 
    22332 Fit molecule copy of CopB_Q9JIF7.pdb (#39) to map postprocess_20231221.mrc
    22333 (#36) using 7501 atoms 
    22334 average map value = 0.002525, steps = 152 
    22335 shifted from previous position = 8.96 
    22336 rotated from previous position = 5.97 degrees 
    22337 atoms outside contour = 5351, contour level = 0.0030265 
    22338  
    22339 Position of copy of CopB_Q9JIF7.pdb (#39) relative to postprocess_20231221.mrc
    22340 (#36) coordinates: 
    22341 Matrix rotation and translation 
    22342 0.06472481 -0.55243097 0.83104194 167.09562729 
    22343 -0.18885300 0.81095780 0.55378875 200.49830852 
    22344 -0.97987001 -0.19278864 -0.05183916 229.32932065 
    22345 Axis -0.37474512 0.90898871 0.18249826 
    22346 Axis point 225.52004092 0.00000000 -20.08070126 
    22347 Rotation angle (degrees) 95.05306122 
    22348 Shift along axis 161.48462904 
    22349  
    22350 
    22351 > hide #39 models
    22352 
    22353 > show #40 models
    22354 
    22355 > fitmap #40 inMap #36
    22356 
    22357 Fit molecule copy of hArf1_P84078 (#40) to map postprocess_20231221.mrc (#36)
    22358 using 1457 atoms 
    22359 average map value = 0.002588, steps = 92 
    22360 shifted from previous position = 11.4 
    22361 rotated from previous position = 6.03 degrees 
    22362 atoms outside contour = 1109, contour level = 0.0030265 
    22363  
    22364 Position of copy of hArf1_P84078 (#40) relative to postprocess_20231221.mrc
    22365 (#36) coordinates: 
    22366 Matrix rotation and translation 
    22367 0.15801986 0.02346451 0.98715709 126.68399998 
    22368 -0.68662820 -0.71584286 0.12692792 200.56114650 
    22369 0.70962767 -0.69786703 -0.09700599 178.42871677 
    22370 Axis -0.73433684 0.24709181 -0.63221439 
    22371 Axis point 0.00000000 138.25600143 -15.36555268 
    22372 Rotation angle (degrees) 145.83405390 
    22373 Shift along axis -156.27691420 
    22374  
    22375 
    22376 > hide #40 models
    22377 
    22378 > show #41 models
    22379 
    22380 > fitmap #41 inMap #36
    22381 
    22382 Fit molecule copy of hArf1_P84078 (#41) to map postprocess_20231221.mrc (#36)
    22383 using 1457 atoms 
    22384 average map value = 0.003766, steps = 68 
    22385 shifted from previous position = 8.18 
    22386 rotated from previous position = 5.97 degrees 
    22387 atoms outside contour = 534, contour level = 0.0030265 
    22388  
    22389 Position of copy of hArf1_P84078 (#41) relative to postprocess_20231221.mrc
    22390 (#36) coordinates: 
    22391 Matrix rotation and translation 
    22392 -0.84428374 -0.49456571 0.20637270 242.99409799 
    22393 -0.47730328 0.51888718 -0.70918098 195.95467590 
    22394 0.24365245 -0.69725235 -0.67414585 220.55144469 
    22395 Axis 0.27884153 -0.87144483 0.40352361 
    22396 Axis point 151.45924998 0.00000000 157.15946705 
    22397 Rotation angle (degrees) 178.77437128 
    22398 Shift along axis -14.00912865 
    22399  
    22400 
    22401 > hide #41 models
    22402 
    22403 > show #42 models
    22404 
    22405 > fitmap #42 inMap #36
    22406 
    22407 Fit molecule copy of CopBprime_O55029.pdb (#42) to map
    22408 postprocess_20231221.mrc (#36) using 7214 atoms 
    22409 average map value = 0.00312, steps = 56 
    22410 shifted from previous position = 5.95 
    22411 rotated from previous position = 5.98 degrees 
    22412 atoms outside contour = 3628, contour level = 0.0030265 
    22413  
    22414 Position of copy of CopBprime_O55029.pdb (#42) relative to
    22415 postprocess_20231221.mrc (#36) coordinates: 
    22416 Matrix rotation and translation 
    22417 -0.16268022 -0.17529317 -0.97098272 188.48242636 
    22418 -0.01387082 -0.98358841 0.17989284 177.42102522 
    22419 -0.98658134 0.04273334 0.15757892 238.54302847 
    22420 Axis -0.64576423 0.07344028 0.75999677 
    22421 Axis point 189.55660736 85.43076212 0.00000000 
    22422 Rotation angle (degrees) 173.90372847 
    22423 Shift along axis 72.60657227 
    22424  
    22425 
    22426 > hide #42 models
    22427 
    22428 > show #43 models
    22429 
    22430 > fitmap #43 inMap #36
    22431 
    22432 Fit molecule copy of CopD_Q5XJY5 (#43) to map postprocess_20231221.mrc (#36)
    22433 using 1462 atoms 
    22434 average map value = 0.003142, steps = 164 
    22435 shifted from previous position = 6.52 
    22436 rotated from previous position = 35 degrees 
    22437 atoms outside contour = 865, contour level = 0.0030265 
    22438  
    22439 Position of copy of CopD_Q5XJY5 (#43) relative to postprocess_20231221.mrc
    22440 (#36) coordinates: 
    22441 Matrix rotation and translation 
    22442 -0.32491016 0.89810858 0.29636864 -149.93069389 
    22443 -0.91987837 -0.37289481 0.12154526 221.26426157 
    22444 0.21967517 -0.23313181 0.94730797 434.62351627 
    22445 Axis -0.19131934 0.04136987 -0.98065562 
    22446 Axis point -35.80244399 196.85797289 0.00000000 
    22447 Rotation angle (degrees) 112.03967239 
    22448 Shift along axis -388.37767818 
    22449  
    22450 
    22451 > select add #43
    22452 
    22453 1462 atoms, 1481 bonds, 179 residues, 1 model selected 
    22454 
    22455 > view matrix models
    22456 > #43,-0.97733,0.13913,-0.15956,67.371,0.080654,-0.45217,-0.88828,293.04,-0.19574,-0.88101,0.4307,624.54
    22457 
    22458 > fitmap #43 inMap #36
    22459 
    22460 Fit molecule copy of CopD_Q5XJY5 (#43) to map postprocess_20231221.mrc (#36)
    22461 using 1462 atoms 
    22462 average map value = 0.003729, steps = 88 
    22463 shifted from previous position = 5.98 
    22464 rotated from previous position = 6.06 degrees 
    22465 atoms outside contour = 772, contour level = 0.0030265 
    22466  
    22467 Position of copy of CopD_Q5XJY5 (#43) relative to postprocess_20231221.mrc
    22468 (#36) coordinates: 
    22469 Matrix rotation and translation 
    22470 0.23754336 0.93136597 0.27591773 -93.05673218 
    22471 -0.88686680 0.09206350 0.45275999 106.11011123 
    22472 0.39628329 -0.35225240 0.84786662 472.43405137 
    22473 Axis -0.40410032 -0.06042114 -0.91271694 
    22474 Axis point -102.04661937 189.92856592 0.00000000 
    22475 Rotation angle (degrees) 84.90906303 
    22476 Shift along axis -400.00560060 
    22477  
    22478 
    22479 > view matrix models
    22480 > #43,-0.99401,0.079827,-0.074614,95.992,0.032531,-0.43569,-0.89951,279.06,-0.10431,-0.89655,0.43049,631.69
    22481 
    22482 > fitmap #43 inMap #36
    22483 
    22484 Fit molecule copy of CopD_Q5XJY5 (#43) to map postprocess_20231221.mrc (#36)
    22485 using 1462 atoms 
    22486 average map value = 0.003729, steps = 68 
    22487 shifted from previous position = 4.11 
    22488 rotated from previous position = 0.109 degrees 
    22489 atoms outside contour = 773, contour level = 0.0030265 
    22490  
    22491 Position of copy of CopD_Q5XJY5 (#43) relative to postprocess_20231221.mrc
    22492 (#36) coordinates: 
    22493 Matrix rotation and translation 
    22494 0.23900079 0.93130387 0.27486677 -92.97642963 
    22495 -0.88620586 0.09350435 0.45375778 105.80878398 
    22496 0.39688514 -0.35203701 0.84767455 472.41541880 
    22497 Axis -0.40454241 -0.06125829 -0.91246527 
    22498 Axis point -102.44395100 189.84768420 0.00000000 
    22499 Rotation angle (degrees) 84.83122436 
    22500 Shift along axis -399.93141732 
    22501  
    22502 
    22503 > select subtract #43
    22504 
    22505 Nothing selected 
    22506 
    22507 > hide #43 models
    22508 
    22509 > show #!44 models
    22510 
    22511 > fitmap #44 inMap #36
    22512 
    22513 Fit molecule copy of CopG_Q9QZE5 (#44) to map postprocess_20231221.mrc (#36)
    22514 using 6673 atoms 
    22515 average map value = 0.003524, steps = 84 
    22516 shifted from previous position = 12.9 
    22517 rotated from previous position = 6.04 degrees 
    22518 atoms outside contour = 4070, contour level = 0.0030265 
    22519  
    22520 Position of copy of CopG_Q9QZE5 (#44) relative to postprocess_20231221.mrc
    22521 (#36) coordinates: 
    22522 Matrix rotation and translation 
    22523 0.48946347 -0.51115936 -0.70649955 223.51199949 
    22524 0.54898811 -0.44884913 0.70508617 282.29297018 
    22525 -0.67752311 -0.73297378 0.06092515 258.74098150 
    22526 Axis -0.80480981 -0.01621666 0.59331121 
    22527 Axis point 0.00000000 245.02374166 103.83319278 
    22528 Rotation angle (degrees) 116.69430856 
    22529 Shift along axis -30.94857405 
    22530  
    22531 
    22532 > hide #!44 models
    22533 
    22534 > show #45 models
    22535 
    22536 > fitmap #45 inMap #36
    22537 
    22538 Fit molecule copy of CopZ1_P61924.pdb (#45) to map postprocess_20231221.mrc
    22539 (#36) using 1420 atoms 
    22540 average map value = 0.003341, steps = 140 
    22541 shifted from previous position = 7.55 
    22542 rotated from previous position = 28.6 degrees 
    22543 atoms outside contour = 848, contour level = 0.0030265 
    22544  
    22545 Position of copy of CopZ1_P61924.pdb (#45) relative to
    22546 postprocess_20231221.mrc (#36) coordinates: 
    22547 Matrix rotation and translation 
    22548 -0.79241779 -0.25904378 -0.55224123 225.83639020 
    22549 -0.24122239 -0.69846324 0.67376618 252.43001963 
    22550 -0.56025513 0.66711726 0.49098754 221.81404820 
    22551 Axis -0.32212885 0.38825989 0.86341604 
    22552 Axis point 153.79328451 77.22601021 0.00000000 
    22553 Rotation angle (degrees) 179.40868121 
    22554 Shift along axis 216.77784350 
    22555  
    22556 
    22557 > hide #45 models
    22558 
    22559 > show #46 models
    22560 
    22561 > fitmap #46 inMap #36
    22562 
    22563 Fit molecule copy of Golph3_ Q9CRA5.pdb (#46) to map postprocess_20231221.mrc
    22564 (#36) using 2367 atoms 
    22565 average map value = 0.002844, steps = 96 
    22566 shifted from previous position = 15.2 
    22567 rotated from previous position = 22.1 degrees 
    22568 atoms outside contour = 1512, contour level = 0.0030265 
    22569  
    22570 Position of copy of Golph3_ Q9CRA5.pdb (#46) relative to
    22571 postprocess_20231221.mrc (#36) coordinates: 
    22572 Matrix rotation and translation 
    22573 0.88215741 -0.29722968 0.36531195 188.44731661 
    22574 -0.47090905 -0.56749136 0.67542448 245.58008344 
    22575 0.00655517 -0.76785941 -0.64058485 188.06587507 
    22576 Axis -0.96391743 0.23960076 -0.11599421 
    22577 Axis point 0.00000000 186.21158181 17.25382099 
    22578 Rotation angle (degrees) 131.52596597 
    22579 Shift along axis -144.62103243 
    22580  
    22581 
    22582 > select add #46
    22583 
    22584 2367 atoms, 2398 bonds, 298 residues, 1 model selected 
    22585 
    22586 > view matrix models
    22587 > #46,-0.82505,0.028912,0.56432,291.15,-0.23659,0.88926,-0.39146,195.77,-0.51315,-0.45648,-0.72685,263.31
    22588 
    22589 > fitmap #46 inMap #36
    22590 
    22591 Fit molecule copy of Golph3_ Q9CRA5.pdb (#46) to map postprocess_20231221.mrc
    22592 (#36) using 2367 atoms 
    22593 average map value = 0.0031, steps = 56 
    22594 shifted from previous position = 6.03 
    22595 rotated from previous position = 6.01 degrees 
    22596 atoms outside contour = 1160, contour level = 0.0030265 
    22597  
    22598 Position of copy of Golph3_ Q9CRA5.pdb (#46) relative to
    22599 postprocess_20231221.mrc (#36) coordinates: 
    22600 Matrix rotation and translation 
    22601 0.66096817 -0.23564404 0.71245559 198.02898892 
    22602 -0.68872881 -0.56745747 0.45127003 233.22010661 
    22603 0.29794916 -0.78896381 -0.53736617 191.32937752 
    22604 Axis -0.89616357 0.29951252 -0.32738832 
    22605 Axis point 0.00000000 180.10300621 -4.23076087 
    22606 Rotation angle (degrees) 136.21386820 
    22607 Shift along axis -170.25302671 
    22608  
    22609 
    22610 > show #45 models
    22611 
    22612 > select subtract #46
    22613 
    22614 Nothing selected 
    22615 
    22616 > select add #45
    22617 
    22618 1420 atoms, 1441 bonds, 177 residues, 1 model selected 
    22619 
    22620 > view matrix models
    22621 > #45,0.21012,-0.87378,0.43859,277.7,0.96106,0.10223,-0.25675,165.54,0.1795,0.47545,0.86123,257.13
    22622 
    22623 > fitmap #45 inMap #36
    22624 
    22625 Fit molecule copy of CopZ1_P61924.pdb (#45) to map postprocess_20231221.mrc
    22626 (#36) using 1420 atoms 
    22627 average map value = 0.003252, steps = 76 
    22628 shifted from previous position = 3.55 
    22629 rotated from previous position = 5.44 degrees 
    22630 atoms outside contour = 813, contour level = 0.0030265 
    22631  
    22632 Position of copy of CopZ1_P61924.pdb (#45) relative to
    22633 postprocess_20231221.mrc (#36) coordinates: 
    22634 Matrix rotation and translation 
    22635 -0.74307979 -0.25499030 -0.61871834 231.17592815 
    22636 -0.25871991 -0.74320531 0.61701692 238.13464030 
    22637 -0.61716809 0.61856756 0.48628977 211.26405643 
    22638 Axis 0.35841371 -0.35832445 -0.86205754 
    22639 Axis point 159.61400354 74.97358294 0.00000000 
    22640 Rotation angle (degrees) 179.87605755 
    22641 Shift along axis -184.59461497 
    22642  
    22643 
    22644 > select subtract #45
    22645 
    22646 Nothing selected 
    22647 
    22648 > show #47 models
    22649 
    22650 > fitmap #47 inMap #36
    22651 
    22652 Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc
    22653 (#36) using 1463 atoms 
    22654 average map value = 0.003943, steps = 84 
    22655 shifted from previous position = 12.6 
    22656 rotated from previous position = 6.02 degrees 
    22657 atoms outside contour = 660, contour level = 0.0030265 
    22658  
    22659 Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to
    22660 postprocess_20231221.mrc (#36) coordinates: 
    22661 Matrix rotation and translation 
    22662 -0.81856850 0.29541049 -0.49262388 229.56463346 
    22663 0.42692248 0.88665736 -0.17769625 242.04056520 
    22664 0.38429525 -0.35576876 -0.85190715 217.27719994 
    22665 Axis -0.19688936 -0.96958283 0.14540881 
    22666 Axis point 58.97509138 0.00000000 149.05910006 
    22667 Rotation angle (degrees) 153.11413728 
    22668 Shift along axis -248.28319028 
    22669  
    22670 
    22671 > hide #!36 models
    22672 
    22673 > show #!36 models
    22674 
    22675 > select add #47
    22676 
    22677 1463 atoms, 1486 bonds, 185 residues, 1 model selected 
    22678 
    22679 > view matrix models
    22680 > #47,0.32785,0.87698,0.35131,275.82,0.096539,-0.40101,0.91097,160.42,0.93978,-0.26475,-0.21614,255.31
    22681 
    22682 > fitmap #47 inMap #36
    22683 
    22684 Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc
    22685 (#36) using 1463 atoms 
    22686 average map value = 0.003943, steps = 72 
    22687 shifted from previous position = 5.7 
    22688 rotated from previous position = 0.0285 degrees 
    22689 atoms outside contour = 662, contour level = 0.0030265 
    22690  
    22691 Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to
    22692 postprocess_20231221.mrc (#36) coordinates: 
    22693 Matrix rotation and translation 
    22694 -0.81884961 0.29515291 -0.49231100 229.57867805 
    22695 0.42656715 0.88679941 -0.17784067 242.04679876 
    22696 0.38409091 -0.35562846 -0.85205787 217.26175350 
    22697 Axis -0.19669890 -0.96962391 0.14539264 
    22698 Axis point 59.03249218 0.00000000 149.04035077 
    22699 Rotation angle (degrees) 153.13250017 
    22700 Shift along axis -248.26397584 
    22701  
    22702 
    22703 > view matrix models
    22704 > #47,0.3277,0.87708,0.3512,275.64,0.097012,-0.401,0.91093,162.99,0.93979,-0.26444,-0.21649,257.75
    22705 
    22706 > view matrix models
    22707 > #47,0.3277,0.87708,0.3512,275.87,0.097012,-0.401,0.91093,160.24,0.93979,-0.26444,-0.21649,257.67
    22708 
    22709 > ui mousemode right "rotate selected models"
    22710 
    22711 > view matrix models
    22712 > #47,0.099911,0.92585,0.36445,276.02,0.092207,-0.37333,0.92311,159.99,0.99071,-0.058624,-0.12267,255.51
    22713 
    22714 > fitmap #47 inMap #36
    22715 
    22716 Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc
    22717 (#36) using 1463 atoms 
    22718 average map value = 0.003943, steps = 72 
    22719 shifted from previous position = 4.67 
    22720 rotated from previous position = 13.4 degrees 
    22721 atoms outside contour = 662, contour level = 0.0030265 
    22722  
    22723 Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to
    22724 postprocess_20231221.mrc (#36) coordinates: 
    22725 Matrix rotation and translation 
    22726 -0.81870415 0.29453144 -0.49292472 229.57598062 
    22727 0.42644716 0.88673453 -0.17845091 242.04233282 
    22728 0.38453397 -0.35630484 -0.85157532 217.27081545 
    22729 Axis -0.19653058 -0.96960163 0.14576834 
    22730 Axis point 58.99807446 0.00000000 149.13106012 
    22731 Rotation angle (degrees) 153.09682552 
    22732 Shift along axis -248.13213561 
    22733  
    22734 
    22735 > hide #!36 models
    22736 
    22737 > view matrix models
    22738 > #47,0.22168,0.97072,0.092523,273.06,0.86044,-0.15008,-0.48696,143.03,-0.45881,0.18756,-0.86851,254.23
    22739 
    22740 > view matrix models
    22741 > #47,0.3029,0.90974,0.28394,275.09,0.61891,-0.41434,0.66729,156.13,0.72471,-0.026388,-0.68855,254.8
    22742 
    22743 > fitmap #47 inMap #36
    22744 
    22745 Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc
    22746 (#36) using 1463 atoms 
    22747 average map value = 0.003336, steps = 64 
    22748 shifted from previous position = 5.95 
    22749 rotated from previous position = 10.5 degrees 
    22750 atoms outside contour = 802, contour level = 0.0030265 
    22751  
    22752 Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to
    22753 postprocess_20231221.mrc (#36) coordinates: 
    22754 Matrix rotation and translation 
    22755 -0.95758064 0.24644955 0.14933843 234.39384468 
    22756 0.20215165 0.94383530 -0.26136118 238.42578689 
    22757 -0.20536323 -0.22008539 -0.95361858 220.01146182 
    22758 Axis 0.11470840 0.98574167 -0.12310707 
    22759 Axis point 114.77598687 0.00000000 115.34990095 
    22760 Rotation angle (degrees) 169.63512521 
    22761 Shift along axis 234.82821042 
    22762  
    22763 
    22764 > view matrix models
    22765 > #47,-0.70547,-0.10535,-0.70087,280.07,-0.705,0.0028904,0.7092,155.05,-0.072687,0.99443,-0.076309,250.98
    22766 
    22767 > view matrix models
    22768 > #47,-0.80485,-0.090919,-0.58647,281.06,-0.57553,-0.12162,0.80869,157.07,-0.14485,0.9884,0.045562,252.21
    22769 
    22770 > ui mousemode right "translate selected models"
    22771 
    22772 > view matrix models
    22773 > #47,-0.80485,-0.090919,-0.58647,273.14,-0.57553,-0.12162,0.80869,155.64,-0.14485,0.9884,0.045562,258.19
    22774 
    22775 > fitmap #47 inMap #36
    22776 
    22777 Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc
    22778 (#36) using 1463 atoms 
    22779 average map value = 0.003447, steps = 132 
    22780 shifted from previous position = 4.97 
    22781 rotated from previous position = 22.8 degrees 
    22782 atoms outside contour = 763, contour level = 0.0030265 
    22783  
    22784 Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to
    22785 postprocess_20231221.mrc (#36) coordinates: 
    22786 Matrix rotation and translation 
    22787 0.30588544 -0.72116594 -0.62157365 234.08714943 
    22788 -0.47200092 0.45211849 -0.75683817 239.69779730 
    22789 0.82683085 0.52488911 -0.20209452 215.51541985 
    22790 Axis 0.65727153 -0.74274384 0.12777217 
    22791 Axis point 107.57558101 0.00000000 252.91913519 
    22792 Rotation angle (degrees) 102.82919125 
    22793 Shift along axis 3.36162952 
    22794  
    22795 
    22796 > view matrix models
    22797 > #47,-0.86066,0.2634,-0.43576,315.58,-0.46594,-0.062242,0.88263,179.49,0.20536,0.96268,0.1763,210.55
    22798 
    22799 > view matrix models
    22800 > #47,-0.86066,0.2634,-0.43576,318.6,-0.46594,-0.062242,0.88263,152.04,0.20536,0.96268,0.1763,201.33
    22801 
    22802 > ui mousemode right "rotate selected models"
    22803 
    22804 > view matrix models
    22805 > #47,-0.70672,0.10683,-0.69938,318.18,-0.6883,-0.3325,0.64473,154.47,-0.16367,0.93703,0.30851,203.82
    22806 
    22807 > view matrix models
    22808 > #47,-0.65261,-0.74609,0.13214,335.68,0.74868,-0.66178,-0.039003,149.16,0.11655,0.073477,0.99046,219.62
    22809 
    22810 > view matrix models
    22811 > #47,-0.97051,-0.18493,-0.15461,327.03,0.2146,-0.37077,-0.90359,140.31,0.10978,-0.91013,0.39952,228.12
    22812 
    22813 > view matrix models
    22814 > #47,-0.94215,-0.083255,-0.32468,324.29,0.33323,-0.3371,-0.88052,139.67,-0.036144,-0.93778,0.34535,228.51
    22815 
    22816 > ui mousemode right "translate selected models"
    22817 
    22818 > view matrix models
    22819 > #47,-0.94215,-0.083255,-0.32468,291.69,0.33323,-0.3371,-0.88052,148.12,-0.036144,-0.93778,0.34535,275.46
    22820 
    22821 > fitmap #47 inMap #36
    22822 
    22823 Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc
    22824 (#36) using 1463 atoms 
    22825 average map value = 0.003524, steps = 296 
    22826 shifted from previous position = 6.93 
    22827 rotated from previous position = 36.8 degrees 
    22828 atoms outside contour = 843, contour level = 0.0030265 
    22829  
    22830 Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to
    22831 postprocess_20231221.mrc (#36) coordinates: 
    22832 Matrix rotation and translation 
    22833 -0.23600017 0.84960641 0.47167032 222.05629774 
    22834 -0.91651317 -0.03328767 -0.39861707 257.82571853 
    22835 -0.32296680 -0.52636575 0.78653135 224.18820747 
    22836 Axis -0.06582058 0.40942479 -0.90996648 
    22837 Axis point 233.55009631 87.16188170 0.00000000 
    22838 Rotation angle (degrees) 103.96789961 
    22839 Shift along axis -113.05938715 
    22840  
    22841 
    22842 > ui mousemode right "rotate selected models"
    22843 
    22844 > view matrix models
    22845 > #47,-0.69303,-0.58037,0.42765,305.93,-0.11104,-0.5002,-0.85876,156.99,0.71231,-0.64263,0.28221,268.54
    22846 
    22847 > view matrix models
    22848 > #47,-0.74623,-0.37782,0.54808,304.34,-0.19131,-0.66689,-0.72018,160.51,0.63761,-0.64227,0.42537,269.86
    22849 
    22850 > view matrix models
    22851 > #47,-0.79925,-0.30357,0.5187,303.3,-0.20727,-0.67088,-0.71201,160.67,0.56413,-0.67658,0.47328,270.91
    22852 
    22853 > ui mousemode right "translate selected models"
    22854 
    22855 > view matrix models
    22856 > #47,-0.79925,-0.30357,0.5187,302.6,-0.20727,-0.67088,-0.71201,165.43,0.56413,-0.67658,0.47328,255.98
    22857 
    22858 > view matrix models
    22859 > #47,-0.79925,-0.30357,0.5187,280.85,-0.20727,-0.67088,-0.71201,177.97,0.56413,-0.67658,0.47328,238.93
    22860 
    22861 > view matrix models
    22862 > #47,-0.79925,-0.30357,0.5187,268.48,-0.20727,-0.67088,-0.71201,168.94,0.56413,-0.67658,0.47328,253.68
    22863 
    22864 > ui mousemode right "rotate selected models"
    22865 
    22866 > view matrix models
    22867 > #47,-0.95716,0.042458,-0.28642,258.2,0.2287,-0.49584,-0.83776,164.32,-0.17759,-0.86738,0.46488,258.42
    22868 
    22869 > ui mousemode right "translate selected models"
    22870 
    22871 > view matrix models
    22872 > #47,-0.95716,0.042458,-0.28642,269.87,0.2287,-0.49584,-0.83776,164.07,-0.17759,-0.86738,0.46488,266.05
    22873 
    22874 > fitmap #47 inMap #36
    22875 
    22876 Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc
    22877 (#36) using 1463 atoms 
    22878 average map value = 0.003418, steps = 200 
    22879 shifted from previous position = 5.22 
    22880 rotated from previous position = 24.6 degrees 
    22881 atoms outside contour = 772, contour level = 0.0030265 
    22882  
    22883 Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to
    22884 postprocess_20231221.mrc (#36) coordinates: 
    22885 Matrix rotation and translation 
    22886 0.26044120 0.94244973 0.20966382 226.85831724 
    22887 -0.94833218 0.29046575 -0.12765478 239.40983299 
    22888 -0.18120836 -0.16558438 0.96940465 217.26827378 
    22889 Axis -0.01964111 0.20240559 -0.97910480 
    22890 Axis point 293.57103397 -6.82403053 0.00000000 
    22891 Rotation angle (degrees) 74.92069348 
    22892 Shift along axis -168.72627056 
    22893  
    22894 
    22895 > ui mousemode right "rotate selected models"
    22896 
    22897 > view matrix models
    22898 > #47,-0.77651,-0.35256,-0.52223,281.7,0.59896,-0.15569,-0.7855,154.26,0.19563,-0.92275,0.33206,261.79
    22899 
    22900 > view matrix models
    22901 > #47,-0.87705,-0.38104,-0.29257,284.15,0.40177,-0.24788,-0.88155,155.34,0.26338,-0.89071,0.37049,261.45
    22902 
    22903 > ui mousemode right "translate selected models"
    22904 
    22905 > view matrix models
    22906 > #47,-0.87705,-0.38104,-0.29257,274.89,0.40177,-0.24788,-0.88155,163.35,0.26338,-0.89071,0.37049,254.91
    22907 
    22908 > fitmap #47 inMap #36
    22909 
    22910 Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc
    22911 (#36) using 1463 atoms 
    22912 average map value = 0.003586, steps = 132 
    22913 shifted from previous position = 4.79 
    22914 rotated from previous position = 8.83 degrees 
    22915 atoms outside contour = 722, contour level = 0.0030265 
    22916  
    22917 Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to
    22918 postprocess_20231221.mrc (#36) coordinates: 
    22919 Matrix rotation and translation 
    22920 -0.33536384 0.83016103 0.44538049 228.49116961 
    22921 -0.82065670 -0.48959996 0.29464296 240.71463678 
    22922 0.46265938 -0.26669189 0.84547133 214.80312053 
    22923 Axis -0.32191614 -0.00990915 -0.94671633 
    22924 Axis point 151.27276822 76.39905039 0.00000000 
    22925 Rotation angle (degrees) 119.32390386 
    22926 Shift along axis -279.29789433 
    22927  
    22928 
    22929 > ui mousemode right "rotate selected models"
    22930 
    22931 > view matrix models
    22932 > #47,-0.91252,0.0016876,-0.40902,269.21,0.35726,-0.48365,-0.79903,167.66,-0.19917,-0.87526,0.44074,262.81
    22933 
    22934 > view matrix models
    22935 > #47,-0.94788,-0.16031,-0.27537,272.49,0.31847,-0.44938,-0.83465,167.06,0.010056,-0.87884,0.47701,262.49
    22936 
    22937 > ui mousemode right "translate selected models"
    22938 
    22939 > view matrix models
    22940 > #47,-0.94788,-0.16031,-0.27537,271.44,0.31847,-0.44938,-0.83465,161.58,0.010056,-0.87884,0.47701,260.2
    22941 
    22942 > view matrix models
    22943 > #47,-0.94788,-0.16031,-0.27537,275.35,0.31847,-0.44938,-0.83465,161.71,0.010056,-0.87884,0.47701,257.04
    22944 
    22945 > fitmap #47 inMap #36
    22946 
    22947 Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc
    22948 (#36) using 1463 atoms 
    22949 average map value = 0.003554, steps = 144 
    22950 shifted from previous position = 2.44 
    22951 rotated from previous position = 8.11 degrees 
    22952 atoms outside contour = 759, contour level = 0.0030265 
    22953  
    22954 Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to
    22955 postprocess_20231221.mrc (#36) coordinates: 
    22956 Matrix rotation and translation 
    22957 0.02967744 0.93785449 0.34575747 230.60267565 
    22958 -0.97181536 -0.05386033 0.22950813 237.60977330 
    22959 0.23386785 -0.34282363 0.90982296 212.71121886 
    22960 Axis -0.28663485 0.05603649 -0.95639969 
    22961 Axis point 207.82482217 47.44475019 0.00000000 
    22962 Rotation angle (degrees) 93.27795871 
    22963 Shift along axis -256.22088917 
    22964  
    22965 
    22966 > fitmap #47 inMap #36
    22967 
    22968 Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc
    22969 (#36) using 1463 atoms 
    22970 average map value = 0.003554, steps = 64 
    22971 shifted from previous position = 0.0428 
    22972 rotated from previous position = 0.0858 degrees 
    22973 atoms outside contour = 757, contour level = 0.0030265 
    22974  
    22975 Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to
    22976 postprocess_20231221.mrc (#36) coordinates: 
    22977 Matrix rotation and translation 
    22978 0.02972147 0.93767602 0.34623739 230.58929566 
    22979 -0.97214566 -0.05344952 0.22820164 237.64468398 
    22980 0.23248543 -0.34337567 0.90996906 212.69033249 
    22981 Axis -0.28625208 0.05696821 -0.95645929 
    22982 Axis point 208.02160818 47.45879110 0.00000000 
    22983 Rotation angle (degrees) 93.26071473 
    22984 Shift along axis -255.89811636 
    22985  
    22986 
    22987 > fitmap #45 inMap #36
    22988 
    22989 Fit molecule copy of CopZ1_P61924.pdb (#45) to map postprocess_20231221.mrc
    22990 (#36) using 1420 atoms 
    22991 average map value = 0.003251, steps = 48 
    22992 shifted from previous position = 0.0293 
    22993 rotated from previous position = 0.012 degrees 
    22994 atoms outside contour = 814, contour level = 0.0030265 
    22995  
    22996 Position of copy of CopZ1_P61924.pdb (#45) relative to
    22997 postprocess_20231221.mrc (#36) coordinates: 
    22998 Matrix rotation and translation 
    22999 -0.74308490 -0.25515086 -0.61864601 231.19634471 
    23000 -0.25852657 -0.74323382 0.61706361 238.12726488 
    23001 -0.61724295 0.61846709 0.48632255 211.28277057 
    23002 Axis 0.35841059 -0.35830483 -0.86206699 
    23003 Axis point 159.61699509 74.98658362 0.00000000 
    23004 Rotation angle (degrees) 179.88781970 
    23005 Shift along axis -184.59883245 
    23006  
    23007 
    23008 > fitmap #45 inMap #36
    23009 
    23010 Fit molecule copy of CopZ1_P61924.pdb (#45) to map postprocess_20231221.mrc
    23011 (#36) using 1420 atoms 
    23012 average map value = 0.00325, steps = 44 
    23013 shifted from previous position = 0.0394 
    23014 rotated from previous position = 0.073 degrees 
    23015 atoms outside contour = 812, contour level = 0.0030265 
    23016  
    23017 Position of copy of CopZ1_P61924.pdb (#45) relative to
    23018 postprocess_20231221.mrc (#36) coordinates: 
    23019 Matrix rotation and translation 
    23020 -0.74235412 -0.25550993 -0.61937472 231.20075895 
    23021 -0.25920664 -0.74292440 0.61715092 238.15986692 
    23022 -0.61783677 0.61869058 0.48528312 211.26007469 
    23023 Axis 0.35891956 -0.35852041 -0.86176555 
    23024 Axis point 159.70161943 74.94960414 0.00000000 
    23025 Rotation angle (degrees) 179.87710908 
    23026 Shift along axis -184.45935437 
    23027  
    23028 
    23029 > select subtract #47
    23030 
    23031 Nothing selected 
    23032 
    23033 > hide #47 models
    23034 
    23035 > hide #46 models
    23036 
    23037 > hide #45 models
    23038 
    23039 > show #!1 models
    23040 
    23041 > show #!16 models
    23042 
    23043 > show #!24 models
    23044 
    23045 > show #!36 models
    23046 
    23047 > show #38 models
    23048 
    23049 > show #39 models
    23050 
    23051 > show #40 models
    23052 
    23053 > show #41 models
    23054 
    23055 > show #42 models
    23056 
    23057 > show #43 models
    23058 
    23059 > show #!44 models
    23060 
    23061 > show #45 models
    23062 
    23063 > show #46 models
    23064 
    23065 > show #47 models
    23066 
    23067 > show #35 models
    23068 
    23069 > show #34 models
    23070 
    23071 > show #33 models
    23072 
    23073 > show #!32 models
    23074 
    23075 > show #31 models
    23076 
    23077 > show #30 models
    23078 
    23079 > show #29 models
    23080 
    23081 > show #28 models
    23082 
    23083 > show #27 models
    23084 
    23085 > show #26 models
    23086 
    23087 > show #12 models
    23088 
    23089 > show #11 models
    23090 
    23091 > show #10 models
    23092 
    23093 > show #!9 models
    23094 
    23095 > show #8 models
    23096 
    23097 > show #7 models
    23098 
    23099 > show #6 models
    23100 
    23101 > show #5 models
    23102 
    23103 > show #4 models
    23104 
    23105 > show #3 models
    23106 
    23107 > hide #!1 models
    23108 
    23109 > hide #!16 models
    23110 
    23111 > show #!16 models
    23112 
    23113 > hide #!24 models
    23114 
    23115 > hide #!36 models
    23116 
    23117 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    23118 > dataset/Chimera sessions/20240125_linkage_2_fitting_final.cxs"
    23119 
    23120 > hide #40 models
    23121 
    23122 > hide #39 models
    23123 
    23124 > hide #38 models
    23125 
    23126 > hide #41 models
    23127 
    23128 > hide #42 models
    23129 
    23130 > hide #43 models
    23131 
    23132 > hide #!44 models
    23133 
    23134 > hide #45 models
    23135 
    23136 > hide #46 models
    23137 
    23138 > hide #47 models
    23139 
    23140 > hide #35 models
    23141 
    23142 > hide #34 models
    23143 
    23144 > hide #33 models
    23145 
    23146 > hide #!32 models
    23147 
    23148 > hide #31 models
    23149 
    23150 > hide #30 models
    23151 
    23152 > hide #29 models
    23153 
    23154 > hide #28 models
    23155 
    23156 > hide #27 models
    23157 
    23158 > hide #26 models
    23159 
    23160 > hide #12 models
    23161 
    23162 > hide #11 models
    23163 
    23164 > hide #10 models
    23165 
    23166 > hide #!9 models
    23167 
    23168 > hide #8 models
    23169 
    23170 > hide #7 models
    23171 
    23172 > hide #6 models
    23173 
    23174 > hide #5 models
    23175 
    23176 > hide #4 models
    23177 
    23178 > hide #3 models
    23179 
    23180 > hide #!16 models
    23181 
    23182 > show #!19 models
    23183 
    23184 > show #!1 models
    23185 
    23186 > volume #19 level 0.5397
    23187 
    23188 > show #4 models
    23189 
    23190 > hide #4 models
    23191 
    23192 > show #7 models
    23193 
    23194 > hide #7 models
    23195 
    23196 > show #7 models
    23197 
    23198 > show #!14 models
    23199 
    23200 > hide #!14 models
    23201 
    23202 > show #!14 models
    23203 
    23204 > hide #!14 models
    23205 
    23206 > show #!20 models
    23207 
    23208 > hide #!20 models
    23209 
    23210 > show #!20 models
    23211 
    23212 > hide #!20 models
    23213 
    23214 > show #!20 models
    23215 
    23216 > select add #20
    23217 
    23218 2 models selected 
    23219 
    23220 > volume #20 level 1.011
    23221 
    23222 > view matrix models #20,1,0,0,312.34,0,1,0,273.87,0,0,1,241.7
    23223 
    23224 > view matrix models #20,1,0,0,332.44,0,1,0,260.55,0,0,1,299.91
    23225 
    23226 > ui mousemode right "rotate selected models"
    23227 
    23228 > view matrix models
    23229 > #20,0.95666,0.21298,-0.19859,329.18,-0.24071,0.96215,-0.12773,257.74,0.16387,0.17,0.97172,300.02
    23230 
    23231 > ui mousemode right "translate selected models"
    23232 
    23233 > view matrix models
    23234 > #20,0.95666,0.21298,-0.19859,361.78,-0.24071,0.96215,-0.12773,267.27,0.16387,0.17,0.97172,311.62
    23235 
    23236 > view matrix models
    23237 > #20,0.95666,0.21298,-0.19859,333.5,-0.24071,0.96215,-0.12773,213.9,0.16387,0.17,0.97172,295.17
    23238 
    23239 > view matrix models
    23240 > #20,0.95666,0.21298,-0.19859,357.76,-0.24071,0.96215,-0.12773,227.65,0.16387,0.17,0.97172,300.14
    23241 
    23242 > select subtract #20
    23243 
    23244 Nothing selected 
    23245 
    23246 > select add #20
    23247 
    23248 2 models selected 
    23249 
    23250 > select subtract #20
    23251 
    23252 Nothing selected 
    23253 
    23254 > hide #7 models
    23255 
    23256 > select add #20
    23257 
    23258 2 models selected 
    23259 
    23260 > view matrix models
    23261 > #20,0.95666,0.21298,-0.19859,311.96,-0.24071,0.96215,-0.12773,227.73,0.16387,0.17,0.97172,284.57
    23262 
    23263 > ui mousemode right "rotate selected models"
    23264 
    23265 > view matrix models
    23266 > #20,0.89857,0.42787,-0.097447,314.09,-0.41305,0.74969,-0.51706,219.97,-0.14818,0.50487,0.85038,282.45
    23267 
    23268 > view matrix models
    23269 > #20,0.88872,0.4396,-0.13009,313.51,-0.43969,0.73699,-0.51335,219.97,-0.12979,0.51342,0.84826,282.46
    23270 
    23271 > ui mousemode right "translate selected models"
    23272 
    23273 > view matrix models
    23274 > #20,0.88872,0.4396,-0.13009,347.36,-0.43969,0.73699,-0.51335,231.34,-0.12979,0.51342,0.84826,299.01
    23275 
    23276 > fitmap #20 inMap #19
    23277 
    23278 Fit map emd_2988_2015_linkage3.map in map COPI_golph_linkage3_postprocess.mrc
    23279 using 652612 points 
    23280 correlation = 0.9026, correlation about mean = 0.3729, overlap = 8.04e+05 
    23281 steps = 112, shift = 18.2, angle = 12.3 degrees 
    23282  
    23283 Position of emd_2988_2015_linkage3.map (#20) relative to
    23284 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    23285 Matrix rotation and translation 
    23286 0.99933497 0.03646392 0.00008145 272.09854390 
    23287 -0.03646391 0.99933497 -0.00004234 272.11937185 
    23288 -0.00008294 0.00003934 1.00000000 360.59420077 
    23289 Axis 0.00112008 0.00225413 -0.99999683 
    23290 Axis point 7618.69992125 -7334.22915568 0.00000000 
    23291 Rotation angle (degrees) 2.08969831 
    23292 Shift along axis -359.67489280 
    23293  
    23294 
    23295 > hide #!20 models
    23296 
    23297 > show #!20 models
    23298 
    23299 > hide #!20 models
    23300 
    23301 > show #!20 models
    23302 
    23303 > hide #!20 models
    23304 
    23305 > select subtract #20
    23306 
    23307 Nothing selected 
    23308 
    23309 > hide #!1 models
    23310 
    23311 > show #!2 models
    23312 
    23313 > show #!25 models
    23314 
    23315 > select add #25
    23316 
    23317 2 models selected 
    23318 
    23319 > view matrix models
    23320 > #25,0.6466,0.19867,-0.73651,11.706,-0.076592,0.97752,0.19644,4.369,0.75898,-0.070608,0.64728,-32.071
    23321 
    23322 > view matrix models
    23323 > #25,0.6466,0.19867,-0.73651,-19.879,-0.076592,0.97752,0.19644,83.472,0.75898,-0.070608,0.64728,-52.205
    23324 
    23325 > ui mousemode right "rotate selected models"
    23326 
    23327 > view matrix models
    23328 > #25,0.12133,0.26002,-0.95795,59.291,-0.88041,-0.41751,-0.22484,392.3,-0.45842,0.87067,0.17827,30.565
    23329 
    23330 > view matrix models
    23331 > #25,0.16005,0.3047,-0.9389,47.254,-0.93859,-0.24756,-0.24034,380.5,-0.30567,0.91971,0.24637,-0.8887
    23332 
    23333 > ui mousemode right "translate selected models"
    23334 
    23335 > view matrix models
    23336 > #25,0.16005,0.3047,-0.9389,108.88,-0.93859,-0.24756,-0.24034,444.07,-0.30567,0.91971,0.24637,158.42
    23337 
    23338 > view matrix models
    23339 > #25,0.16005,0.3047,-0.9389,245.61,-0.93859,-0.24756,-0.24034,440.82,-0.30567,0.91971,0.24637,152.37
    23340 
    23341 > ui mousemode right "rotate selected models"
    23342 
    23343 > view matrix models
    23344 > #25,-0.68844,0.71936,-0.092628,187.99,-0.58828,-0.62851,-0.50883,479.68,-0.42425,-0.29581,0.85587,235.84
    23345 
    23346 > ui mousemode right "translate selected models"
    23347 
    23348 > view matrix models
    23349 > #25,-0.68844,0.71936,-0.092628,228.29,-0.58828,-0.62851,-0.50883,426.64,-0.42425,-0.29581,0.85587,244.71
    23350 
    23351 > view matrix models
    23352 > #25,-0.68844,0.71936,-0.092628,228.62,-0.58828,-0.62851,-0.50883,425.78,-0.42425,-0.29581,0.85587,227.31
    23353 
    23354 > view matrix models
    23355 > #25,-0.68844,0.71936,-0.092628,235.42,-0.58828,-0.62851,-0.50883,425.2,-0.42425,-0.29581,0.85587,231.72
    23356 
    23357 > fitmap #25 inMap #19
    23358 
    23359 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    23360 using 65799 points 
    23361 correlation = 0.8183, correlation about mean = 0.05053, overlap = 5958 
    23362 steps = 148, shift = 49.8, angle = 31.3 degrees 
    23363  
    23364 Position of emd_3720_2017_leaf.map (#25) relative to
    23365 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    23366 Matrix rotation and translation 
    23367 -0.46489818 0.75248179 -0.46651995 215.17123274 
    23368 -0.88308305 -0.43190505 0.18336412 384.52257675 
    23369 -0.06351416 0.49722150 0.86529577 161.30552428 
    23370 Axis 0.18317022 -0.23519810 -0.95453157 
    23371 Axis point 222.63405314 97.56461346 0.00000000 
    23372 Rotation angle (degrees) 121.04784811 
    23373 Shift along axis -204.99723344 
    23374  
    23375 
    23376 > view matrix models
    23377 > #25,-0.63568,0.58961,-0.49826,178.72,-0.60337,-0.78211,-0.15572,220.21,-0.48151,0.20165,0.85293,33.15
    23378 
    23379 > view matrix models
    23380 > #25,-0.63568,0.58961,-0.49826,204.73,-0.60337,-0.78211,-0.15572,153.55,-0.48151,0.20165,0.85293,68.534
    23381 
    23382 > ui mousemode right "rotate selected models"
    23383 
    23384 > view matrix models
    23385 > #25,-0.10316,0.6244,-0.77426,174.37,-0.78422,0.42777,0.44946,-44.644,0.61184,0.65356,0.44554,-58.732
    23386 
    23387 > view matrix models
    23388 > #25,-0.018668,0.44332,-0.89617,201.4,-0.41766,0.81092,0.40985,-126.85,0.90841,0.38194,0.17002,-25.977
    23389 
    23390 > view matrix models
    23391 > #25,-0.021163,0.4584,-0.8885,198.94,-0.44909,0.78963,0.41809,-121.77,0.89324,0.40786,0.18915,-29.705
    23392 
    23393 > ui mousemode right "translate selected models"
    23394 
    23395 > view matrix models
    23396 > #25,-0.021163,0.4584,-0.8885,349.6,-0.44909,0.78963,0.41809,84.38,0.89324,0.40786,0.18915,41.841
    23397 
    23398 > view matrix models
    23399 > #25,-0.021163,0.4584,-0.8885,274.98,-0.44909,0.78963,0.41809,192.78,0.89324,0.40786,0.18915,61.831
    23400 
    23401 > view matrix models
    23402 > #25,-0.021163,0.4584,-0.8885,42.531,-0.44909,0.78963,0.41809,110.28,0.89324,0.40786,0.18915,-60.794
    23403 
    23404 > ui mousemode right "rotate selected models"
    23405 
    23406 > view matrix models
    23407 > #25,0.13919,0.30541,-0.94199,49.246,-0.1004,0.9507,0.2934,67.03,0.98516,0.053742,0.163,-25.73
    23408 
    23409 > view matrix models
    23410 > #25,0.23609,0.03095,-0.97124,74.628,0.3876,0.91354,0.12333,37.266,0.89108,-0.40557,0.20368,34.664
    23411 
    23412 > view matrix models
    23413 > #25,0.43747,0.69352,-0.57241,-76.094,-0.71054,0.65674,0.25265,175.96,0.55114,0.2962,0.78007,-81.442
    23414 
    23415 > view matrix models
    23416 > #25,0.74812,0.65918,0.076091,-186.71,-0.64557,0.69653,0.31318,156.45,0.15345,-0.28342,0.94664,12.108
    23417 
    23418 > view matrix models
    23419 > #25,0.77221,0.46411,0.43393,-210.12,-0.62128,0.6946,0.36269,147.85,-0.13308,-0.54967,0.82472,91.173
    23420 
    23421 > ui mousemode right "translate selected models"
    23422 
    23423 > view matrix models
    23424 > #25,0.77221,0.46411,0.43393,-219.73,-0.62128,0.6946,0.36269,143.24,-0.13308,-0.54967,0.82472,138
    23425 
    23426 > ui mousemode right "rotate selected models"
    23427 
    23428 > view matrix models
    23429 > #25,-0.93919,-0.2422,0.24345,81.058,0.084195,-0.84969,-0.52052,356.24,0.33292,-0.46837,0.81841,76.482
    23430 
    23431 > view matrix models
    23432 > #25,-0.031081,0.99339,-0.11047,-125.32,-0.36442,-0.11417,-0.92421,368.75,-0.93072,0.011531,0.36556,217.5
    23433 
    23434 > view matrix models
    23435 > #25,0.59583,0.57327,0.56244,-228.63,-0.68436,0.72893,-0.017973,193.02,-0.42028,-0.3742,0.82664,149.26
    23436 
    23437 > view matrix models
    23438 > #25,0.75972,-0.62162,-0.19084,-12.12,0.53019,0.76208,-0.37167,95.419,0.37647,0.18118,0.90854,-16.961
    23439 
    23440 > view matrix models
    23441 > #25,0.89727,-0.3718,0.23805,-110.11,0.43717,0.67312,-0.59648,144.14,0.061533,0.63927,0.76651,-18.596
    23442 
    23443 > view matrix models
    23444 > #25,0.76784,-0.5143,-0.38199,-2.3573,0.18231,0.74702,-0.63931,169.35,0.61415,0.42125,0.66736,-42.795
    23445 
    23446 > view matrix models
    23447 > #25,0.89678,-0.033832,-0.44118,-66.936,0.13282,0.97167,0.19547,45.621,0.42207,-0.23389,0.87587,31.4
    23448 
    23449 > ui mousemode right "translate selected models"
    23450 
    23451 > view matrix models
    23452 > #25,0.89678,-0.033832,-0.44118,171.25,0.13282,0.97167,0.19547,53.745,0.42207,-0.23389,0.87587,88.916
    23453 
    23454 > view matrix models
    23455 > #25,0.89678,-0.033832,-0.44118,195.74,0.13282,0.97167,0.19547,86.943,0.42207,-0.23389,0.87587,93.725
    23456 
    23457 > view matrix models
    23458 > #25,0.89678,-0.033832,-0.44118,195.82,0.13282,0.97167,0.19547,119.59,0.42207,-0.23389,0.87587,139.26
    23459 
    23460 > view matrix models
    23461 > #25,0.89678,-0.033832,-0.44118,184.36,0.13282,0.97167,0.19547,100.48,0.42207,-0.23389,0.87587,129.53
    23462 
    23463 > view matrix models
    23464 > #25,0.89678,-0.033832,-0.44118,145.7,0.13282,0.97167,0.19547,57.277,0.42207,-0.23389,0.87587,113.63
    23465 
    23466 > ui mousemode right "rotate selected models"
    23467 
    23468 > view matrix models
    23469 > #25,0.78116,0.27107,-0.56241,137.28,-0.5906,0.61291,-0.52491,270.19,0.20242,0.7422,0.63887,51.138
    23470 
    23471 > view matrix models
    23472 > #25,0.77342,0.1674,-0.6114,156.54,-0.58448,0.56168,-0.58558,283.06,0.24538,0.81024,0.53225,51.27
    23473 
    23474 > ui mousemode right "translate selected models"
    23475 
    23476 > view matrix models
    23477 > #25,0.77342,0.1674,-0.6114,169.97,-0.58448,0.56168,-0.58558,306.64,0.24538,0.81024,0.53225,81.849
    23478 
    23479 > view matrix models
    23480 > #25,0.77342,0.1674,-0.6114,167.16,-0.58448,0.56168,-0.58558,296.96,0.24538,0.81024,0.53225,59.331
    23481 
    23482 > ui mousemode right "rotate selected models"
    23483 
    23484 > view matrix models
    23485 > #25,0.6409,-0.51173,-0.57217,258.28,0.14465,0.81254,-0.56468,182.18,0.75387,0.27914,0.59477,57.59
    23486 
    23487 > fitmap #25 inMap #19
    23488 
    23489 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    23490 using 65799 points 
    23491 correlation = 0.8146, correlation about mean = 0.05, overlap = 5646 
    23492 steps = 180, shift = 38.8, angle = 14.9 degrees 
    23493  
    23494 Position of emd_3720_2017_leaf.map (#25) relative to
    23495 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    23496 Matrix rotation and translation 
    23497 0.70479046 -0.52630711 -0.47567979 198.09278448 
    23498 0.41600529 0.84975311 -0.32381983 129.68092723 
    23499 0.57463905 0.03033982 0.81784442 144.26284646 
    23500 Axis 0.24343593 -0.72194938 0.64770985 
    23501 Axis point -60.73686098 0.00000000 429.54979468 
    23502 Rotation angle (degrees) 46.67042076 
    23503 Shift along axis 48.04030265 
    23504  
    23505 
    23506 > view matrix models
    23507 > #25,0.078449,-0.39198,-0.91662,387.45,0.82643,0.5398,-0.16011,98.418,0.55755,-0.74496,0.36629,225.6
    23508 
    23509 > fitmap #25 inMap #19
    23510 
    23511 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    23512 using 65799 points 
    23513 correlation = 0.808, correlation about mean = 0.04063, overlap = 5479 
    23514 steps = 100, shift = 14.7, angle = 17.9 degrees 
    23515  
    23516 Position of emd_3720_2017_leaf.map (#25) relative to
    23517 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    23518 Matrix rotation and translation 
    23519 0.12186889 -0.39353508 -0.91119600 296.34979061 
    23520 0.96823416 0.24908247 0.02192166 111.44966518 
    23521 0.21833601 -0.88492265 0.41138951 343.50685782 
    23522 Axis -0.45613137 -0.56814051 0.68495294 
    23523 Axis point 175.93624035 403.10747204 0.00000000 
    23524 Rotation angle (degrees) 96.24784959 
    23525 Shift along axis 36.79252640 
    23526  
    23527 
    23528 > hide #!2 models
    23529 
    23530 > show #!2 models
    23531 
    23532 > hide #!2 models
    23533 
    23534 > show #!2 models
    23535 
    23536 > view matrix models
    23537 > #25,-0.75203,0.6566,0.057618,234.67,-0.22465,-0.17315,-0.95893,414,-0.61966,-0.73409,0.27772,375.53
    23538 
    23539 > view matrix models
    23540 > #25,-0.7827,0.55937,-0.27292,290.32,-0.46771,-0.81792,-0.33505,441.7,-0.41064,-0.1346,0.90181,203.8
    23541 
    23542 > fitmap #25 inMap #19
    23543 
    23544 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    23545 using 65799 points 
    23546 correlation = 0.8588, correlation about mean = 0.04115, overlap = 5859 
    23547 steps = 260, shift = 39.3, angle = 35.6 degrees 
    23548  
    23549 Position of emd_3720_2017_leaf.map (#25) relative to
    23550 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    23551 Matrix rotation and translation 
    23552 -0.08947556 0.98600460 -0.14067366 91.46359821 
    23553 -0.99282867 -0.09954020 -0.06620422 408.30779591 
    23554 -0.07928035 0.13374118 0.98784004 172.71556867 
    23555 Axis 0.10048233 -0.03085313 -0.99446035 
    23556 Axis point 237.58375679 151.90296586 0.00000000 
    23557 Rotation angle (degrees) 95.77302294 
    23558 Shift along axis -175.16588479 
    23559  
    23560 
    23561 > ui mousemode right "translate selected models"
    23562 
    23563 > view matrix models
    23564 > #25,-0.29299,0.92356,-0.24736,80.419,-0.77649,-0.3808,-0.50204,253.08,-0.55786,0.044977,0.82871,111.22
    23565 
    23566 > view matrix models
    23567 > #25,-0.29299,0.92356,-0.24736,173.28,-0.77649,-0.3808,-0.50204,215.96,-0.55786,0.044977,0.82871,123.87
    23568 
    23569 > view matrix models
    23570 > #25,-0.29299,0.92356,-0.24736,215.9,-0.77649,-0.3808,-0.50204,302.83,-0.55786,0.044977,0.82871,206.96
    23571 
    23572 > view matrix models
    23573 > #25,-0.29299,0.92356,-0.24736,240.89,-0.77649,-0.3808,-0.50204,293.39,-0.55786,0.044977,0.82871,202.8
    23574 
    23575 > view matrix models
    23576 > #25,-0.29299,0.92356,-0.24736,232.09,-0.77649,-0.3808,-0.50204,294.57,-0.55786,0.044977,0.82871,196.09
    23577 
    23578 > fitmap #25 inMap #19
    23579 
    23580 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    23581 using 65799 points 
    23582 correlation = 0.7571, correlation about mean = 0.009396, overlap = 5333 
    23583 steps = 188, shift = 58.4, angle = 34.9 degrees 
    23584  
    23585 Position of emd_3720_2017_leaf.map (#25) relative to
    23586 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    23587 Matrix rotation and translation 
    23588 -0.15382053 0.91961510 -0.36145171 179.19271353 
    23589 -0.77488219 -0.33924589 -0.53335714 349.30800026 
    23590 -0.61310428 0.19804121 0.76477634 274.04621748 
    23591 Axis 0.39265820 0.13510209 -0.90970708 
    23592 Axis point 286.49579405 108.34974591 0.00000000 
    23593 Rotation angle (degrees) 111.35497625 
    23594 Shift along axis -131.74805496 
    23595  
    23596 
    23597 > ui mousemode right "rotate selected models"
    23598 
    23599 > view matrix models
    23600 > #25,0.030336,-0.86677,-0.49779,448.07,0.71714,0.36579,-0.59322,94.296,0.69627,-0.33899,0.63269,94.527
    23601 
    23602 > view matrix models
    23603 > #25,0.43392,-0.79587,-0.42226,384.79,0.61903,0.6039,-0.50209,65.782,0.65461,-0.043527,0.75472,49.009
    23604 
    23605 > view matrix models
    23606 > #25,0.34359,-0.81546,-0.46579,402.67,0.69512,0.55434,-0.45773,57.656,0.63147,-0.16651,0.75731,65.967
    23607 
    23608 > view matrix models
    23609 > #25,0.13981,-0.8098,-0.56981,437.77,0.83787,0.40342,-0.36774,48.488,0.52767,-0.42601,0.7349,111.38
    23610 
    23611 > view matrix models
    23612 > #25,0.2084,-0.92602,-0.31473,412.56,0.54467,0.37716,-0.74906,131.55,0.81235,-0.015318,0.58297,48.934
    23613 
    23614 > view matrix models
    23615 > #25,0.23733,-0.93595,-0.26013,403.77,0.46879,0.34488,-0.8132,151.84,0.85083,0.07105,0.52061,41.95
    23616 
    23617 > fitmap #25 inMap #19
    23618 
    23619 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    23620 using 65799 points 
    23621 correlation = 0.8149, correlation about mean = 0.08031, overlap = 5858 
    23622 steps = 84, shift = 20.3, angle = 10.7 degrees 
    23623  
    23624 Position of emd_3720_2017_leaf.map (#25) relative to
    23625 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    23626 Matrix rotation and translation 
    23627 -0.00934477 -0.99698756 0.07699679 343.92842577 
    23628 0.87412989 -0.04553773 -0.48355277 133.66638721 
    23629 0.48560235 0.06278651 0.87192215 138.36935964 
    23630 Axis 0.27431989 -0.20516304 0.93949812 
    23631 Axis point 67.24504758 222.70660197 0.00000000 
    23632 Rotation angle (degrees) 95.24876618 
    23633 Shift along axis 196.92075807 
    23634  
    23635 
    23636 > ui mousemode right "translate selected models"
    23637 
    23638 > view matrix models
    23639 > #25,0.13176,-0.98466,-0.11442,383.56,0.50261,0.16584,-0.84846,154.19,0.85441,0.054283,0.51675,20.013
    23640 
    23641 > fitmap #25 inMap #19
    23642 
    23643 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    23644 using 65799 points 
    23645 correlation = 0.8157, correlation about mean = 0.1387, overlap = 5885 
    23646 steps = 280, shift = 60.4, angle = 7.32 degrees 
    23647  
    23648 Position of emd_3720_2017_leaf.map (#25) relative to
    23649 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    23650 Matrix rotation and translation 
    23651 -0.11704114 -0.98261050 0.14414582 335.90492708 
    23652 0.86614263 -0.17200813 -0.46926558 162.73902599 
    23653 0.48589952 0.06992746 0.87121285 140.55907935 
    23654 Axis 0.27567991 -0.17473266 0.94523494 
    23655 Axis point 63.08781834 214.85282853 0.00000000 
    23656 Rotation angle (degrees) 102.05896395 
    23657 Shift along axis 197.02777020 
    23658  
    23659 
    23660 > view matrix models
    23661 > #25,0.025365,-0.99862,-0.046025,403.88,0.52109,0.052498,-0.85189,187.7,0.85312,-0.002375,0.5217,-8.0185
    23662 
    23663 > view matrix models
    23664 > #25,0.025365,-0.99862,-0.046025,371.17,0.52109,0.052498,-0.85189,164.03,0.85312,-0.002375,0.5217,9.0216
    23665 
    23666 > ui mousemode right "rotate selected models"
    23667 
    23668 > view matrix models
    23669 > #25,0.17214,-0.82699,-0.53522,394.22,0.58883,0.52196,-0.61712,71.567,0.78971,-0.20892,0.57681,34.042
    23670 
    23671 > ui mousemode right "translate selected models"
    23672 
    23673 > view matrix models
    23674 > #25,0.17214,-0.82699,-0.53522,412.87,0.58883,0.52196,-0.61712,72.241,0.78971,-0.20892,0.57681,28.677
    23675 
    23676 > view matrix models
    23677 > #25,0.17214,-0.82699,-0.53522,416.21,0.58883,0.52196,-0.61712,77.092,0.78971,-0.20892,0.57681,47.65
    23678 
    23679 > fitmap #25 inMap #19
    23680 
    23681 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    23682 using 65799 points 
    23683 correlation = 0.8115, correlation about mean = 0.105, overlap = 5819 
    23684 steps = 136, shift = 51.6, angle = 33.7 degrees 
    23685  
    23686 Position of emd_3720_2017_leaf.map (#25) relative to
    23687 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    23688 Matrix rotation and translation 
    23689 0.17587965 -0.98196640 0.06934235 312.28291010 
    23690 0.77224676 0.09394623 -0.62833835 155.26941272 
    23691 0.61049268 0.16406133 0.77484359 121.80457015 
    23692 Axis 0.39629869 -0.27064267 0.87732542 
    23693 Axis point 8.39504876 234.85898165 0.00000000 
    23694 Rotation angle (degrees) 88.72020735 
    23695 Shift along axis 188.59702491 
    23696  
    23697 
    23698 > ui mousemode right "rotate selected models"
    23699 
    23700 > view matrix models
    23701 > #25,0.87079,-0.16509,-0.4631,267.92,-0.20788,0.72996,-0.65111,188.78,0.44554,0.66325,0.60133,2.6993
    23702 
    23703 > ui mousemode right "translate selected models"
    23704 
    23705 > view matrix models
    23706 > #25,0.87079,-0.16509,-0.4631,267.89,-0.20788,0.72996,-0.65111,158.85,0.44554,0.66325,0.60133,-23.238
    23707 
    23708 > view matrix models
    23709 > #25,0.87079,-0.16509,-0.4631,264.02,-0.20788,0.72996,-0.65111,170.51,0.44554,0.66325,0.60133,-11.694
    23710 
    23711 > fitmap #25 inMap #19
    23712 
    23713 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    23714 using 65799 points 
    23715 correlation = 0.8574, correlation about mean = 0.06226, overlap = 5939 
    23716 steps = 152, shift = 42.9, angle = 19.7 degrees 
    23717  
    23718 Position of emd_3720_2017_leaf.map (#25) relative to
    23719 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    23720 Matrix rotation and translation 
    23721 0.83576487 -0.54749831 -0.04174577 239.45517769 
    23722 0.47363075 0.75728994 -0.44965086 78.95568397 
    23723 0.27779673 0.35603031 0.89222835 115.34252799 
    23724 Axis 0.60153371 -0.23857524 0.76239035 
    23725 Axis point -147.29949365 247.37304955 0.00000000 
    23726 Rotation angle (degrees) 42.04307465 
    23727 Shift along axis 213.13952084 
    23728  
    23729 
    23730 > view matrix models
    23731 > #25,0.88695,-0.40365,-0.22447,318.07,0.067299,0.59377,-0.80181,-9.1712,0.45694,0.69606,0.55381,-229.71
    23732 
    23733 > view matrix models
    23734 > #25,0.88695,-0.40365,-0.22447,485.47,0.067299,0.59377,-0.80181,-54.795,0.45694,0.69606,0.55381,-140.66
    23735 
    23736 > view matrix models
    23737 > #25,0.88695,-0.40365,-0.22447,346.68,0.067299,0.59377,-0.80181,195.8,0.45694,0.69606,0.55381,-33.674
    23738 
    23739 > view matrix models
    23740 > #25,0.88695,-0.40365,-0.22447,363.31,0.067299,0.59377,-0.80181,198.15,0.45694,0.69606,0.55381,43.09
    23741 
    23742 > view matrix models
    23743 > #25,0.88695,-0.40365,-0.22447,393.26,0.067299,0.59377,-0.80181,186.33,0.45694,0.69606,0.55381,35.013
    23744 
    23745 > ui mousemode right "rotate selected models"
    23746 
    23747 > view matrix models
    23748 > #25,0.95786,-0.28603,0.026445,340.41,0.28488,0.93414,-0.21501,49.115,0.036797,0.21348,0.97625,88.098
    23749 
    23750 > view matrix models
    23751 > #25,0.83502,0.46023,0.30154,231.5,-0.21229,0.77509,-0.59512,170.88,-0.50762,0.43293,0.74492,151.79
    23752 
    23753 > ui mousemode right "translate selected models"
    23754 
    23755 > view matrix models
    23756 > #25,0.83502,0.46023,0.30154,208.26,-0.21229,0.77509,-0.59512,140.36,-0.50762,0.43293,0.74492,122.33
    23757 
    23758 > fitmap #25 inMap #19
    23759 
    23760 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    23761 using 65799 points 
    23762 correlation = 0.8403, correlation about mean = 0.01596, overlap = 5988 
    23763 steps = 140, shift = 35.1, angle = 15.4 degrees 
    23764  
    23765 Position of emd_3720_2017_leaf.map (#25) relative to
    23766 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    23767 Matrix rotation and translation 
    23768 0.93891298 0.25657600 0.22937132 170.43893478 
    23769 -0.28672401 0.95179196 0.10900194 109.83885758 
    23770 -0.19034650 -0.16810960 0.96721632 235.14602314 
    23771 Axis -0.37429438 0.56691261 -0.73383500 
    23772 Axis point 765.62360610 -228.04437911 0.00000000 
    23773 Rotation angle (degrees) 21.72663142 
    23774 Shift along axis -174.08368442 
    23775  
    23776 
    23777 > view matrix models
    23778 > #25,0.86913,0.47067,0.15194,-21.085,-0.37006,0.82267,-0.4316,225.62,-0.32813,0.31889,0.88918,397.35
    23779 
    23780 > view matrix models
    23781 > #25,0.86913,0.47067,0.15194,-74.083,-0.37006,0.82267,-0.4316,290.45,-0.32813,0.31889,0.88918,350.98
    23782 
    23783 > view matrix models
    23784 > #25,0.86913,0.47067,0.15194,10.83,-0.37006,0.82267,-0.4316,180.97,-0.32813,0.31889,0.88918,234.15
    23785 
    23786 > ui mousemode right "rotate selected models"
    23787 
    23788 > view matrix models
    23789 > #25,-0.98465,0.17164,-0.031778,278.29,-0.093892,-0.67424,-0.73252,365.26,-0.14716,-0.71829,0.68,363.09
    23790 
    23791 > view matrix models
    23792 > #25,-0.87015,-0.44791,-0.20547,360.58,0.34679,-0.85281,0.39044,198.9,-0.35011,0.26849,0.89741,241.63
    23793 
    23794 > view matrix models
    23795 > #25,-0.76484,0.28034,-0.58003,307.86,0.016261,-0.89166,-0.45241,344.36,-0.64402,-0.35545,0.67742,376.22
    23796 
    23797 > ui mousemode right "translate selected models"
    23798 
    23799 > view matrix models
    23800 > #25,-0.76484,0.28034,-0.58003,379.57,0.016261,-0.89166,-0.45241,350.25,-0.64402,-0.35545,0.67742,283.8
    23801 
    23802 > view matrix models
    23803 > #25,-0.76484,0.28034,-0.58003,369.76,0.016261,-0.89166,-0.45241,367.24,-0.64402,-0.35545,0.67742,282.59
    23804 
    23805 > view matrix models
    23806 > #25,-0.76484,0.28034,-0.58003,383.29,0.016261,-0.89166,-0.45241,385.34,-0.64402,-0.35545,0.67742,302.6
    23807 
    23808 > ui mousemode right "rotate selected models"
    23809 
    23810 > view matrix models
    23811 > #25,-0.69538,-0.27921,-0.66219,452.27,0.67736,-0.56247,-0.47414,274.14,-0.24008,-0.77825,0.58025,319.35
    23812 
    23813 > fitmap #25 inMap #19
    23814 
    23815 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    23816 using 65799 points 
    23817 correlation = 0.7729, correlation about mean = 0.06428, overlap = 5559 
    23818 steps = 124, shift = 14, angle = 12.6 degrees 
    23819  
    23820 Position of emd_3720_2017_leaf.map (#25) relative to
    23821 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    23822 Matrix rotation and translation 
    23823 -0.79496812 -0.33189805 -0.50780843 371.67559918 
    23824 0.44723250 -0.88620585 -0.12092275 302.28317545 
    23825 -0.40988877 -0.32323816 0.85294098 317.05588803 
    23826 Axis -0.24949388 -0.12075380 0.96081805 
    23827 Axis point 191.34710771 216.85866741 0.00000000 
    23828 Rotation angle (degrees) 156.08056652 
    23829 Shift along axis 175.40039127 
    23830  
    23831 
    23832 > ui mousemode right "translate selected models"
    23833 
    23834 > view matrix models
    23835 > #25,-0.63612,-0.48177,-0.6027,436.89,0.76263,-0.51126,-0.39624,246.44,-0.11724,-0.71169,0.69264,289.97
    23836 
    23837 > view matrix models
    23838 > #25,-0.63612,-0.48177,-0.6027,457.81,0.76263,-0.51126,-0.39624,201.89,-0.11724,-0.71169,0.69264,293.57
    23839 
    23840 > view matrix models
    23841 > #25,-0.63612,-0.48177,-0.6027,451.62,0.76263,-0.51126,-0.39624,205.28,-0.11724,-0.71169,0.69264,288.28
    23842 
    23843 > view matrix models
    23844 > #25,-0.63612,-0.48177,-0.6027,468.69,0.76263,-0.51126,-0.39624,160.3,-0.11724,-0.71169,0.69264,287.48
    23845 
    23846 > ui mousemode right "rotate selected models"
    23847 
    23848 > view matrix models
    23849 > #25,0.71382,-0.18447,-0.6756,289.81,-0.19431,0.87464,-0.44413,108.93,0.67284,0.44831,0.58848,72.766
    23850 
    23851 > ui mousemode right "translate selected models"
    23852 
    23853 > view matrix models
    23854 > #25,0.71382,-0.18447,-0.6756,261.34,-0.19431,0.87464,-0.44413,165.52,0.67284,0.44831,0.58848,66.122
    23855 
    23856 > fitmap #25 inMap #19
    23857 
    23858 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    23859 using 65799 points 
    23860 correlation = 0.8211, correlation about mean = 0.05696, overlap = 5865 
    23861 steps = 140, shift = 37.1, angle = 19.5 degrees 
    23862  
    23863 Position of emd_3720_2017_leaf.map (#25) relative to
    23864 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    23865 Matrix rotation and translation 
    23866 0.63558453 -0.13882733 -0.75944671 215.48549026 
    23867 0.10214723 0.99017298 -0.09551674 109.20996656 
    23868 0.76524393 -0.01686642 0.64351944 156.79176190 
    23869 Axis 0.05088599 -0.98645996 0.15590819 
    23870 Axis point -69.62726704 0.00000000 321.99608968 
    23871 Rotation angle (degrees) 50.60682500 
    23872 Shift along axis -72.32094683 
    23873  
    23874 
    23875 > hide #!19 models
    23876 
    23877 > show #!19 models
    23878 
    23879 > view matrix models
    23880 > #25,0.56487,0.079977,-0.82129,357.25,-0.43496,0.87465,-0.21398,-91.971,0.70124,0.4781,0.52885,-166.95
    23881 
    23882 > show #3 models
    23883 
    23884 > hide #3 models
    23885 
    23886 > show #4 models
    23887 
    23888 > hide #4 models
    23889 
    23890 > show #5 models
    23891 
    23892 > hide #5 models
    23893 
    23894 > show #7 models
    23895 
    23896 > hide #7 models
    23897 
    23898 > show #8 models
    23899 
    23900 > hide #8 models
    23901 
    23902 > show #!9 models
    23903 
    23904 > hide #!9 models
    23905 
    23906 > show #10 models
    23907 
    23908 > hide #10 models
    23909 
    23910 > show #12 models
    23911 
    23912 > hide #12 models
    23913 
    23914 > show #11 models
    23915 
    23916 > hide #11 models
    23917 
    23918 > show #11 models
    23919 
    23920 > hide #11 models
    23921 
    23922 > show #3 models
    23923 
    23924 > hide #3 models
    23925 
    23926 > show #4 models
    23927 
    23928 > hide #4 models
    23929 
    23930 > show #5 models
    23931 
    23932 > hide #5 models
    23933 
    23934 > show #6 models
    23935 
    23936 > hide #6 models
    23937 
    23938 > show #7 models
    23939 
    23940 > hide #7 models
    23941 
    23942 > show #8 models
    23943 
    23944 > hide #8 models
    23945 
    23946 > show #!9 models
    23947 
    23948 > hide #!9 models
    23949 
    23950 > show #10 models
    23951 
    23952 > hide #10 models
    23953 
    23954 > show #11 models
    23955 
    23956 > hide #11 models
    23957 
    23958 > show #12 models
    23959 
    23960 > hide #12 models
    23961 
    23962 > show #3 models
    23963 
    23964 > hide #3 models
    23965 
    23966 > view matrix models
    23967 > #25,0.56487,0.079977,-0.82129,433.19,-0.43496,0.87465,-0.21398,-169.73,0.70124,0.4781,0.52885,-154.32
    23968 
    23969 > ui mousemode right "rotate selected models"
    23970 
    23971 > view matrix models
    23972 > #25,0.81689,-0.095976,-0.56876,394.71,-0.45716,0.49352,-0.73989,-57.178,0.3517,0.86442,0.35927,-140.11
    23973 
    23974 > view matrix models
    23975 > #25,0.91216,-0.10231,-0.39687,363.6,-0.36624,0.23113,-0.90136,-16.321,0.18394,0.96753,0.17336,-110.64
    23976 
    23977 > view matrix models
    23978 > #25,0.6864,-0.61028,-0.39548,449.48,-0.36183,0.18514,-0.91368,-9.821,0.63082,0.77025,-0.09374,-104.75
    23979 
    23980 > view matrix models
    23981 > #25,0.5107,-0.54979,-0.66099,494.71,-0.22312,0.65772,-0.71946,-105.69,0.8303,0.51491,0.21323,-134.52
    23982 
    23983 > view matrix models
    23984 > #25,0.46377,-0.49765,-0.73298,502.63,-0.15472,0.76913,-0.62009,-138.9,0.87234,0.40098,0.2797,-133.84
    23985 
    23986 > ui mousemode right "translate selected models"
    23987 
    23988 > view matrix models
    23989 > #25,0.46377,-0.49765,-0.73298,397.52,-0.15472,0.76913,-0.62009,147.62,0.87234,0.40098,0.2797,-20.364
    23990 
    23991 > ui mousemode right "rotate selected models"
    23992 
    23993 > view matrix models
    23994 > #25,0.039249,-0.99891,-0.02545,418.32,0.50742,0.041866,-0.86068,189.15,0.8608,0.020867,0.50851,-1.8357
    23995 
    23996 > view matrix models
    23997 > #25,0.51519,-0.7739,-0.36833,379.88,0.28033,0.55826,-0.78087,143.4,0.80994,0.29904,0.50456,-28.78
    23998 
    23999 > ui mousemode right "translate selected models"
    24000 
    24001 > view matrix models
    24002 > #25,0.51519,-0.7739,-0.36833,398.73,0.28033,0.55826,-0.78087,133.35,0.80994,0.29904,0.50456,-15.749
    24003 
    24004 > ui mousemode right "rotate selected models"
    24005 
    24006 > view matrix models
    24007 > #25,0.22769,-0.95906,0.16839,387.34,0.81191,0.091523,-0.57657,103.92,0.53755,0.268,0.79951,-17.528
    24008 
    24009 > ui mousemode right "translate selected models"
    24010 
    24011 > view matrix models
    24012 > #25,0.22769,-0.95906,0.16839,401.46,0.81191,0.091523,-0.57657,93.113,0.53755,0.268,0.79951,-9.3092
    24013 
    24014 > view matrix models
    24015 > #25,0.22769,-0.95906,0.16839,398.34,0.81191,0.091523,-0.57657,95.384,0.53755,0.268,0.79951,-6.8133
    24016 
    24017 > fitmap #25 inMap #19
    24018 
    24019 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    24020 using 65799 points 
    24021 correlation = 0.8531, correlation about mean = 0.008104, overlap = 6210 
    24022 steps = 144, shift = 43.5, angle = 28.6 degrees 
    24023  
    24024 Position of emd_3720_2017_leaf.map (#25) relative to
    24025 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    24026 Matrix rotation and translation 
    24027 -0.08298051 -0.99467949 -0.06104899 406.48563616 
    24028 0.92333542 -0.05369233 -0.38022212 128.58648940 
    24029 0.37492128 -0.08791972 0.92287821 157.15698151 
    24030 Axis 0.14699346 -0.21924137 0.96453416 
    24031 Axis point 112.69615180 258.89460178 0.00000000 
    24032 Rotation angle (degrees) 96.13649005 
    24033 Shift along axis 183.14253084 
    24034  
    24035 
    24036 > view matrix models
    24037 > #25,0.081608,-0.96946,-0.23127,474.58,0.61509,0.23157,-0.75368,-67.784,0.78422,-0.080746,0.61521,-173.58
    24038 
    24039 > hide #!19 models
    24040 
    24041 > show #!19 models
    24042 
    24043 > ui mousemode right "rotate selected models"
    24044 
    24045 > view matrix models
    24046 > #25,0.37285,-0.71606,-0.59013,455.57,0.21025,0.68464,-0.6979,-82.967,0.90376,0.13614,0.40581,-187.22
    24047 
    24048 > view matrix models
    24049 > #25,0.31841,-0.75997,-0.56662,464.06,0.28981,0.64715,-0.70513,-86.589,0.90256,0.060308,0.42631,-180.56
    24050 
    24051 > view matrix models
    24052 > #25,0.53859,-0.56055,-0.62905,423.1,0.45902,0.82128,-0.33884,-171.44,0.70656,-0.10625,0.69963,-172.15
    24053 
    24054 > ui mousemode right "translate selected models"
    24055 
    24056 > view matrix models
    24057 > #25,0.53859,-0.56055,-0.62905,330.34,0.45902,0.82128,-0.33884,-40.428,0.70656,-0.10625,0.69963,37.478
    24058 
    24059 > ui mousemode right "rotate selected models"
    24060 
    24061 > view matrix models
    24062 > #25,0.447,-0.74707,-0.49201,346.09,0.16849,0.61049,-0.77389,70.935,0.87852,0.26304,0.39877,10.984
    24063 
    24064 > view matrix models
    24065 > #25,0.36882,-0.88185,-0.2938,346.64,0.3929,0.43436,-0.81053,71.107,0.84238,0.18351,0.50668,11.293
    24066 
    24067 > ui mousemode right "translate selected models"
    24068 
    24069 > view matrix models
    24070 > #25,0.36882,-0.88185,-0.2938,363.04,0.3929,0.43436,-0.81053,69.66,0.84238,0.18351,0.50668,37.521
    24071 
    24072 > ui mousemode right "rotate selected models"
    24073 
    24074 > view matrix models
    24075 > #25,0.44893,-0.71625,-0.53427,363.79,0.056221,0.61936,-0.78309,82.231,0.8918,0.32152,0.31832,38.62
    24076 
    24077 > view matrix models
    24078 > #25,0.47199,-0.68515,-0.55479,360,0.039622,0.64515,-0.76303,78.566,0.88072,0.33816,0.33165,36.249
    24079 
    24080 > view matrix models
    24081 > #25,0.55,-0.55755,-0.6218,344.2,-0.029642,0.73103,-0.6817,66.154,0.83464,0.39337,0.38554,28.247
    24082 
    24083 > ui mousemode right "translate selected models"
    24084 
    24085 > view matrix models
    24086 > #25,0.55,-0.55755,-0.6218,369.97,-0.029642,0.73103,-0.6817,99.681,0.83464,0.39337,0.38554,50.008
    24087 
    24088 > view matrix models
    24089 > #25,0.55,-0.55755,-0.6218,369.48,-0.029642,0.73103,-0.6817,110.8,0.83464,0.39337,0.38554,69.87
    24090 
    24091 > view matrix models
    24092 > #25,0.55,-0.55755,-0.6218,371.53,-0.029642,0.73103,-0.6817,110.15,0.83464,0.39337,0.38554,70.187
    24093 
    24094 > fitmap #25 inMap #19
    24095 
    24096 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    24097 using 65799 points 
    24098 correlation = 0.7637, correlation about mean = 0.0666, overlap = 5308 
    24099 steps = 228, shift = 76.4, angle = 26.6 degrees 
    24100  
    24101 Position of emd_3720_2017_leaf.map (#25) relative to
    24102 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    24103 Matrix rotation and translation 
    24104 0.40288608 -0.61084859 -0.68157673 313.87552292 
    24105 0.12259994 0.77399628 -0.62120773 155.05660514 
    24106 0.90700170 0.16671467 0.38672232 152.41943803 
    24107 Axis 0.41060187 -0.82783948 0.38221446 
    24108 Axis point 90.53176517 0.00000000 345.79455804 
    24109 Rotation angle (degrees) 73.63219680 
    24110 Shift along axis 58.77281021 
    24111  
    24112 
    24113 > view matrix models
    24114 > #25,0.32934,-0.44313,-0.83377,392.76,-0.43176,0.71463,-0.55036,210.98,0.83971,0.54124,0.044026,87.459
    24115 
    24116 > ui mousemode right "rotate selected models"
    24117 
    24118 > view matrix models
    24119 > #25,0.90115,0.0090876,-0.43341,225.11,-0.31011,0.71212,-0.62985,207.31,0.30292,0.70199,0.64455,55.123
    24120 
    24121 > view matrix models
    24122 > #25,0.27623,-0.83406,-0.47755,401.62,0.68728,0.51875,-0.50848,102.88,0.67183,-0.18775,0.71652,110.74
    24123 
    24124 > view matrix models
    24125 > #25,0.065076,-0.90953,-0.41052,426.22,0.65902,0.34809,-0.66673,145.86,0.74931,-0.22715,0.62205,118.3
    24126 
    24127 > ui mousemode right "translate selected models"
    24128 
    24129 > view matrix models
    24130 > #25,0.065076,-0.90953,-0.41052,462.84,0.65902,0.34809,-0.66673,115.41,0.74931,-0.22715,0.62205,146.28
    24131 
    24132 > view matrix models
    24133 > #25,0.065076,-0.90953,-0.41052,520.5,0.65902,0.34809,-0.66673,-171.62,0.74931,-0.22715,0.62205,-2.5936
    24134 
    24135 > view matrix models
    24136 > #25,0.065076,-0.90953,-0.41052,557.28,0.65902,0.34809,-0.66673,156.86,0.74931,-0.22715,0.62205,164.1
    24137 
    24138 > ui mousemode right "rotate selected models"
    24139 
    24140 > view matrix models
    24141 > #25,0.0033305,-0.98972,-0.14295,540.95,0.98705,0.02618,-0.15826,95.772,0.16037,-0.14058,0.97699,176.65
    24142 
    24143 > view matrix models
    24144 > #25,-0.74418,-0.65339,-0.13885,584.71,0.66699,-0.71554,-0.20768,226.42,0.036341,-0.24716,0.96829,204.43
    24145 
    24146 > view matrix models
    24147 > #25,-0.89731,-0.33527,-0.28709,582.27,0.41715,-0.85673,-0.3033,283.2,-0.14428,-0.39192,0.90862,249.41
    24148 
    24149 > view matrix models
    24150 > #25,-0.56159,-0.77969,-0.27696,596.12,0.81486,-0.46306,-0.34869,196.94,0.14362,-0.4215,0.89538,222.07
    24151 
    24152 > fitmap #25 inMap #19
    24153 
    24154 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    24155 using 65799 points 
    24156 correlation = 0.8074, correlation about mean = 0.07623, overlap = 6716 
    24157 steps = 112, shift = 33.7, angle = 18.4 degrees 
    24158  
    24159 Position of emd_3720_2017_leaf.map (#25) relative to
    24160 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    24161 Matrix rotation and translation 
    24162 -0.73423213 -0.67026487 0.10792683 446.28940662 
    24163 0.67742109 -0.73379952 0.05137081 273.55820272 
    24164 0.04476460 0.11083001 0.99283073 225.18985831 
    24165 Axis 0.04402836 0.04677038 0.99793488 
    24166 Axis point 167.25613122 216.19175428 0.00000000 
    24167 Rotation angle (degrees) 137.52741016 
    24168 Shift along axis 257.16862959 
    24169  
    24170 
    24171 > hide #!19 models
    24172 
    24173 > show #!19 models
    24174 
    24175 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    24176 > dataset/Chimera sessions/20240125_linkage_3_fitting.cxs"
    24177 
    24178 ——— End of log from Thu Jan 25 18:04:25 2024 ———
    24179 
    24180 opened ChimeraX session 
    24181 
    24182 > select add #25
    24183 
    24184 2 models selected 
    24185 
    24186 > ui mousemode right "translate selected models"
    24187 
    24188 > view matrix models
    24189 > #25,-0.57191,-0.8201,0.019025,692.21,0.72153,-0.51394,-0.46397,-57.266,0.39028,-0.25162,0.88565,111.7
    24190 
    24191 > select subtract #25
    24192 
    24193 Nothing selected 
    24194 
    24195 > show #!1 models
    24196 
    24197 > hide #!1 models
    24198 
    24199 > show #!1 models
    24200 
    24201 > hide #!1 models
    24202 
    24203 > hide #!2 models
    24204 
    24205 > show #!2 models
    24206 
    24207 > show #3 models
    24208 
    24209 > show #4 models
    24210 
    24211 > show #5 models
    24212 
    24213 > show #6 models
    24214 
    24215 > show #7 models
    24216 
    24217 > show #8 models
    24218 
    24219 > show #!9 models
    24220 
    24221 > show #10 models
    24222 
    24223 > show #11 models
    24224 
    24225 > show #12 models
    24226 
    24227 > hide #!19 models
    24228 
    24229 > show #!20 models
    24230 
    24231 > hide #!20 models
    24232 
    24233 > hide #!25 models
    24234 
    24235 > show #!25 models
    24236 
    24237 > show #26 models
    24238 
    24239 > hide #26 models
    24240 
    24241 > show #!24 models
    24242 
    24243 > hide #!24 models
    24244 
    24245 > show #!24 models
    24246 
    24247 > hide #!24 models
    24248 
    24249 > show #!36 models
    24250 
    24251 > hide #!36 models
    24252 
    24253 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    24254 > dataset/Structure files/postprocess_20231221.mrc"
    24255 
    24256 Opened postprocess_20231221.mrc as #48, grid size 156,156,156, pixel 2.55,
    24257 shown at level 0.00309, step 1, values float32 
    24258 
    24259 > hide #12 models
    24260 
    24261 > hide #11 models
    24262 
    24263 > hide #10 models
    24264 
    24265 > hide #!9 models
    24266 
    24267 > hide #8 models
    24268 
    24269 > hide #7 models
    24270 
    24271 > hide #6 models
    24272 
    24273 > hide #5 models
    24274 
    24275 > hide #4 models
    24276 
    24277 > hide #3 models
    24278 
    24279 > hide #!2 models
    24280 
    24281 > show #!1 models
    24282 
    24283 > hide #!25 models
    24284 
    24285 > hide #!48 models
    24286 
    24287 > show #!48 models
    24288 
    24289 > volume #48 level 0.003869
    24290 
    24291 > select add #48
    24292 
    24293 2 models selected 
    24294 
    24295 > view matrix models #48,1,0,0,116.2,0,1,0,120.77,0,0,1,87.705
    24296 
    24297 > view matrix models #48,1,0,0,112.94,0,1,0,103.77,0,0,1,99.528
    24298 
    24299 > ui tool show "Fit in Map"
    24300 
    24301 > fitmap #48 inMap #1
    24302 
    24303 Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 16754
    24304 points 
    24305 correlation = 0.6069, correlation about mean = 0.153, overlap = 0.3715 
    24306 steps = 68, shift = 4.98, angle = 1.44 degrees 
    24307  
    24308 Position of postprocess_20231221.mrc (#48) relative to
    24309 postprocess_20231221.mrc (#1) coordinates: 
    24310 Matrix rotation and translation 
    24311 0.99972992 -0.01626780 0.01659628 2.42719609 
    24312 0.01643779 0.99981328 -0.01015862 -7.47507851 
    24313 -0.01642792 0.01042868 0.99981067 -7.15635708 
    24314 Axis 0.40499110 0.64964855 0.64338089 
    24315 Axis point -99.52364532 0.00000000 -354.74004849 
    24316 Rotation angle (degrees) 1.45644214 
    24317 Shift along axis -8.47744448 
    24318  
    24319 
    24320 > select subtract #48
    24321 
    24322 Nothing selected 
    24323 
    24324 > open "/Users/becca/Desktop/Postdoc/Structure files/COPI
    24325 > structures/5a1x_COPI_coat_linkage3_2015.cif"
    24326 
    24327 5a1x_COPI_coat_linkage3_2015.cif title: 
    24328 The structure of the COPI coat linkage III [more info...] 
    24329  
    24330 Chain information for 5a1x_COPI_coat_linkage3_2015.cif #49 
    24331 --- 
    24332 Chain | Description | UniProt 
    24333 A B I J | ADP-RIBOSYLATION FACTOR 1 | ARF1_YEAST 1-181 
    24334 C K | COATOMER SUBUNIT ALPHA | COPA_MOUSE 1-1224 
    24335 D L | COATOMER SUBUNIT BETA' | COPB2_MOUSE 1-905 
    24336 E M | COATOMER SUBUNIT GAMMA-1 | COPG1_MOUSE 1-874 
    24337 F N | COATOMER SUBUNIT ZETA-1 | COPZ1_MOUSE 1-177 
    24338 G O | COATOMER SUBUNIT BETA | COPB_MOUSE 1-968 
    24339 H P Q | COATOMER SUBUNIT DELTA | COPD_MOUSE 1-511 
    24340  
    24341 
    24342 > hide #!49 atoms
    24343 
    24344 > show #!49 cartoons
    24345 
    24346 > close #49
    24347 
    24348 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    24349 > resources/Processing/Reference structures/emd_3720_2017_leaf.map"
    24350 
    24351 Opened emd_3720_2017_leaf.map as #49, grid size 128,128,128, pixel 1.78, shown
    24352 at level 0.226, step 1, values float32 
    24353 
    24354 > hide #!48 models
    24355 
    24356 > show #!48 models
    24357 
    24358 > select add #49
    24359 
    24360 2 models selected 
    24361 
    24362 > view matrix models #49,1,0,0,268.81,0,1,0,56.189,0,0,1,40.587
    24363 
    24364 > view matrix models #49,1,0,0,210.92,0,1,0,75.8,0,0,1,212.42
    24365 
    24366 > view matrix models #49,1,0,0,219.19,0,1,0,199.07,0,0,1,191.45
    24367 
    24368 > fitmap #49 inMap #1
    24369 
    24370 Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 20947
    24371 points 
    24372 correlation = 0.7115, correlation about mean = 0.145, overlap = 14.04 
    24373 steps = 212, shift = 6.68, angle = 6.88 degrees 
    24374  
    24375 Position of emd_3720_2017_leaf.map (#49) relative to postprocess_20231221.mrc
    24376 (#1) coordinates: 
    24377 Matrix rotation and translation 
    24378 0.99596942 0.02399632 0.08642391 97.42320621 
    24379 -0.03099432 0.99626744 0.08056385 75.43929140 
    24380 -0.08416809 -0.08291778 0.99299566 100.35660765 
    24381 Axis -0.67388984 0.70319963 -0.22667767 
    24382 Axis point 1163.48088171 0.00000000 -797.35103447 
    24383 Rotation angle (degrees) 6.96696174 
    24384 Shift along axis -35.35222896 
    24385  
    24386 
    24387 > ui mousemode right "rotate selected models"
    24388 
    24389 > view matrix models
    24390 > #49,-0.36361,-0.91597,0.1697,461.12,0.91486,-0.31678,0.25036,224.15,-0.17557,0.24628,0.95316,187.19
    24391 
    24392 > fitmap #49 inMap #1
    24393 
    24394 Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 20947
    24395 points 
    24396 correlation = 0.6286, correlation about mean = 0.03473, overlap = 13.91 
    24397 steps = 120, shift = 9.27, angle = 5.25 degrees 
    24398  
    24399 Position of emd_3720_2017_leaf.map (#49) relative to postprocess_20231221.mrc
    24400 (#1) coordinates: 
    24401 Matrix rotation and translation 
    24402 -0.37712124 -0.91815484 0.12153704 361.34832305 
    24403 0.88885124 -0.32192586 0.32604787 98.25850449 
    24404 -0.26023651 0.23098793 0.93750815 87.71784471 
    24405 Axis -0.05140209 0.20643773 0.97710864 
    24406 Axis point 155.49421926 165.23084937 0.00000000 
    24407 Rotation angle (degrees) 112.38135407 
    24408 Shift along axis 87.42006807 
    24409  
    24410 
    24411 > view matrix models
    24412 > #49,-0.96284,-0.25919,-0.075825,480.47,0.26981,-0.91128,-0.31107,423.66,0.011531,-0.31998,0.94736,236
    24413 
    24414 > fitmap #49 inMap #1
    24415 
    24416 Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 20947
    24417 points 
    24418 correlation = 0.6939, correlation about mean = 0.01582, overlap = 13.96 
    24419 steps = 216, shift = 10, angle = 11.1 degrees 
    24420  
    24421 Position of emd_3720_2017_leaf.map (#49) relative to postprocess_20231221.mrc
    24422 (#1) coordinates: 
    24423 Matrix rotation and translation 
    24424 -0.96338804 -0.26456440 0.04346448 351.31286233 
    24425 0.21696407 -0.86453226 -0.45333274 335.04411294 
    24426 0.15751215 -0.42730511 0.89028100 118.52082392 
    24427 Axis 0.05252441 -0.23015104 0.97173643 
    24428 Axis point 149.91600402 204.11390906 0.00000000 
    24429 Rotation angle (degrees) 165.65458511 
    24430 Shift along axis 56.51275209 
    24431  
    24432 
    24433 > view matrix models
    24434 > #49,0.3605,0.83622,0.41326,143.37,-0.92655,0.27001,0.26191,349.54,0.10743,-0.47732,0.87214,244.28
    24435 
    24436 > fitmap #49 inMap #1
    24437 
    24438 Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 20947
    24439 points 
    24440 correlation = 0.7336, correlation about mean = 0.04116, overlap = 14.08 
    24441 steps = 192, shift = 3.76, angle = 4.39 degrees 
    24442  
    24443 Position of emd_3720_2017_leaf.map (#49) relative to postprocess_20231221.mrc
    24444 (#1) coordinates: 
    24445 Matrix rotation and translation 
    24446 0.33574710 0.84776690 0.41056689 32.32305883 
    24447 -0.94090697 0.28131321 0.18856552 244.31851482 
    24448 0.04436172 -0.44961557 0.89211988 136.24823204 
    24449 Axis -0.32996314 0.18934157 -0.92481030 
    24450 Axis point 175.22937179 134.35930874 0.00000000 
    24451 Rotation angle (degrees) 75.25070263 
    24452 Shift along axis -90.40953594 
    24453  
    24454 
    24455 > view matrix models
    24456 > #49,-0.73344,0.66639,-0.13415,346.45,-0.67575,-0.69338,0.25019,438.51,0.073705,0.27415,0.95886,149.68
    24457 
    24458 > fitmap #49 inMap #1
    24459 
    24460 Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 20947
    24461 points 
    24462 correlation = 0.7373, correlation about mean = 0.05131, overlap = 14.78 
    24463 steps = 156, shift = 16.4, angle = 6.06 degrees 
    24464  
    24465 Position of emd_3720_2017_leaf.map (#49) relative to postprocess_20231221.mrc
    24466 (#1) coordinates: 
    24467 Matrix rotation and translation 
    24468 -0.75027238 0.63080879 -0.19791822 260.14816342 
    24469 -0.65754750 -0.68086871 0.32256638 324.88423036 
    24470 0.06872138 0.37215328 0.92562374 32.96806789 
    24471 Axis 0.03766304 -0.20252240 -0.97855310 
    24472 Axis point 189.62506423 108.46905602 0.00000000 
    24473 Rotation angle (degrees) 138.82991172 
    24474 Shift along axis -88.25936981 
    24475  
    24476 
    24477 > hide #!1 models
    24478 
    24479 > show #!2 models
    24480 
    24481 > hide #!48 models
    24482 
    24483 > color #49 #d783ffff models
    24484 
    24485 > view matrix models
    24486 > #49,-0.74761,0.6602,-0.072235,353.83,-0.64586,-0.69736,0.31073,439.09,0.15477,0.27896,0.94775,144.49
    24487 
    24488 > ui mousemode right "translate selected models"
    24489 
    24490 > view matrix models
    24491 > #49,-0.74761,0.6602,-0.072235,339.45,-0.64586,-0.69736,0.31073,433.49,0.15477,0.27896,0.94775,142.67
    24492 
    24493 > fitmap #49 inMap #2
    24494 
    24495 Fit map emd_3720_2017_leaf.map in map emdb 3720 using 20947 points 
    24496 correlation = 0.3418, correlation about mean = 0.04388, overlap = 252.2 
    24497 steps = 164, shift = 24.8, angle = 2.9 degrees 
    24498  
    24499 Position of emd_3720_2017_leaf.map (#49) relative to emdb 3720 (#2)
    24500 coordinates: 
    24501 Matrix rotation and translation 
    24502 0.94294873 0.25000953 -0.21987024 3.72814650 
    24503 -0.28736076 0.94466072 -0.15824008 75.52086766 
    24504 0.16814125 0.21239436 0.96260955 -54.20533629 
    24505 Axis 0.48806167 -0.51094425 -0.70762404 
    24506 Axis point 256.63130008 46.75350863 0.00000000 
    24507 Rotation angle (degrees) 22.31512695 
    24508 Shift along axis 1.58961171 
    24509  
    24510 
    24511 > ui mousemode right "rotate selected models"
    24512 
    24513 > view matrix models
    24514 > #49,-0.97788,0.038289,-0.20562,459.88,-0.092506,-0.96089,0.26101,409.82,-0.18758,0.27426,0.94318,205.04
    24515 
    24516 > ui mousemode right "translate selected models"
    24517 
    24518 > view matrix models
    24519 > #49,-0.97788,0.038289,-0.20562,546.42,-0.092506,-0.96089,0.26101,229.35,-0.18758,0.27426,0.94318,246.35
    24520 
    24521 > view matrix models
    24522 > #49,-0.97788,0.038289,-0.20562,539.54,-0.092506,-0.96089,0.26101,393.65,-0.18758,0.27426,0.94318,164.28
    24523 
    24524 > ui mousemode right "rotate selected models"
    24525 
    24526 > view matrix models
    24527 > #49,-0.68369,0.72944,0.022136,397.17,-0.6197,-0.59632,0.51026,377.32,0.3854,0.33514,0.85973,104.62
    24528 
    24529 > ui mousemode right "translate selected models"
    24530 
    24531 > view matrix models
    24532 > #49,-0.68369,0.72944,0.022136,405.64,-0.6197,-0.59632,0.51026,417.1,0.3854,0.33514,0.85973,113.88
    24533 
    24534 > view matrix models
    24535 > #49,-0.68369,0.72944,0.022136,322.15,-0.6197,-0.59632,0.51026,402.73,0.3854,0.33514,0.85973,78.369
    24536 
    24537 > view matrix models
    24538 > #49,-0.68369,0.72944,0.022136,320.93,-0.6197,-0.59632,0.51026,424.67,0.3854,0.33514,0.85973,142.55
    24539 
    24540 > view matrix models
    24541 > #49,-0.68369,0.72944,0.022136,319.54,-0.6197,-0.59632,0.51026,407.37,0.3854,0.33514,0.85973,144.39
    24542 
    24543 > fitmap #49 inMap #2
    24544 
    24545 Fit map emd_3720_2017_leaf.map in map emdb 3720 using 20947 points 
    24546 correlation = 0.2752, correlation about mean = 0.06505, overlap = 198.1 
    24547 steps = 148, shift = 15, angle = 5.01 degrees 
    24548  
    24549 Position of emd_3720_2017_leaf.map (#49) relative to emdb 3720 (#2)
    24550 coordinates: 
    24551 Matrix rotation and translation 
    24552 0.89280795 0.18089064 -0.41251973 37.51137462 
    24553 -0.28427541 0.93667495 -0.20451778 66.14953212 
    24554 0.34940155 0.29986431 0.88769361 -71.87027738 
    24555 Axis 0.49192097 -0.74309747 -0.45367379 
    24556 Axis point 213.86140005 0.00000000 33.09207816 
    24557 Rotation angle (degrees) 30.84155937 
    24558 Shift along axis 1.90274273 
    24559  
    24560 
    24561 > view matrix models
    24562 > #49,-0.73029,0.6828,0.021545,265.57,-0.59958,-0.65576,0.45879,202.65,0.32739,0.32213,0.88828,214.09
    24563 
    24564 > ui mousemode right "rotate selected models"
    24565 
    24566 > view matrix models
    24567 > #49,0.96208,0.052255,0.2677,129.67,-0.25796,0.49316,0.83081,-17.264,-0.088605,-0.86837,0.48794,450.43
    24568 
    24569 > view matrix models
    24570 > #49,0.93713,0.17502,0.30193,113.48,-0.30166,0.84128,0.44862,-9.7978,-0.17549,-0.51149,0.84118,375.1
    24571 
    24572 > view matrix models
    24573 > #49,-0.73136,0.58943,0.34305,239.22,-0.21182,-0.67446,0.70727,133.71,0.64827,0.4446,0.61813,196.23
    24574 
    24575 > view matrix models
    24576 > #49,-0.7478,0.56297,0.35194,243.16,-0.26997,-0.74213,0.61349,159.22,0.60656,0.36375,0.70695,200.1
    24577 
    24578 > view matrix models
    24579 > #49,-0.62127,0.75793,-0.19889,270.55,-0.78358,-0.59925,0.16404,250.37,0.0051501,0.25776,0.96619,247.65
    24580 
    24581 > ui mousemode right "translate selected models"
    24582 
    24583 > view matrix models
    24584 > #49,-0.62127,0.75793,-0.19889,287.72,-0.78358,-0.59925,0.16404,464.32,0.0051501,0.25776,0.96619,210.07
    24585 
    24586 > view matrix models
    24587 > #49,-0.62127,0.75793,-0.19889,308.13,-0.78358,-0.59925,0.16404,463.05,0.0051501,0.25776,0.96619,216.95
    24588 
    24589 > view matrix models
    24590 > #49,-0.62127,0.75793,-0.19889,315.35,-0.78358,-0.59925,0.16404,462.71,0.0051501,0.25776,0.96619,194.9
    24591 
    24592 > fitmap #49 inMap #2
    24593 
    24594 Fit map emd_3720_2017_leaf.map in map emdb 3720 using 20947 points 
    24595 correlation = 1, correlation about mean = 0.9999, overlap = 1662 
    24596 steps = 112, shift = 5.43, angle = 14.7 degrees 
    24597  
    24598 Position of emd_3720_2017_leaf.map (#49) relative to emdb 3720 (#2)
    24599 coordinates: 
    24600 Matrix rotation and translation 
    24601 0.99999999 -0.00012557 0.00002858 0.01420688 
    24602 0.00012557 0.99999999 -0.00005443 0.00493431 
    24603 -0.00002858 0.00005443 0.99999999 -0.00266256 
    24604 Axis 0.38932690 0.20440202 0.89813383 
    24605 Axis point -32.53401205 100.27720859 0.00000000 
    24606 Rotation angle (degrees) 0.00801087 
    24607 Shift along axis 0.00414837 
    24608  
    24609 
    24610 > select subtract #49
    24611 
    24612 Nothing selected 
    24613 
    24614 > hide #!49 models
    24615 
    24616 > color #49 #eff0f0ff models
    24617 
    24618 > color #49 #fffeb6ff models
    24619 
    24620 > color #48 #eff0f0ff models
    24621 
    24622 > color #48 #dbdbdbff models
    24623 
    24624 > show #!48 models
    24625 
    24626 > show #!49 models
    24627 
    24628 > fitmap #49 inMap #48
    24629 
    24630 Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 20947
    24631 points 
    24632 correlation = 0.5968, correlation about mean = 0.06947, overlap = 14.69 
    24633 steps = 88, shift = 11.4, angle = 3.98 degrees 
    24634  
    24635 Position of emd_3720_2017_leaf.map (#49) relative to postprocess_20231221.mrc
    24636 (#48) coordinates: 
    24637 Matrix rotation and translation 
    24638 -0.50717000 0.85774429 -0.08398407 163.99807809 
    24639 -0.85976131 -0.51030904 -0.01987900 384.21661524 
    24640 -0.05990893 0.06212422 0.99626879 111.64334070 
    24641 Axis 0.04768653 -0.01400018 -0.99876423 
    24642 Axis point 193.70984459 143.11340542 0.00000000 
    24643 Rotation angle (degrees) 120.70414533 
    24644 Shift along axis -109.06397880 
    24645  
    24646 
    24647 > hide #!49 models
    24648 
    24649 > show #!49 models
    24650 
    24651 > hide #!2 models
    24652 
    24653 > fitmap #49 inMap #48
    24654 
    24655 Fit map emd_3720_2017_leaf.map in map postprocess_20231221.mrc using 20947
    24656 points 
    24657 correlation = 0.5968, correlation about mean = 0.06947, overlap = 14.69 
    24658 steps = 88, shift = 11.4, angle = 3.98 degrees 
    24659  
    24660 Position of emd_3720_2017_leaf.map (#49) relative to postprocess_20231221.mrc
    24661 (#48) coordinates: 
    24662 Matrix rotation and translation 
    24663 -0.50717000 0.85774429 -0.08398407 163.99807809 
    24664 -0.85976131 -0.51030904 -0.01987900 384.21661524 
    24665 -0.05990893 0.06212422 0.99626879 111.64334070 
    24666 Axis 0.04768653 -0.01400018 -0.99876423 
    24667 Axis point 193.70984459 143.11340542 0.00000000 
    24668 Rotation angle (degrees) 120.70414533 
    24669 Shift along axis -109.06397880 
    24670  
    24671 
    24672 > fitmap #48 inMap #1
    24673 
    24674 Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 16754
    24675 points 
    24676 correlation = 0.6069, correlation about mean = 0.1529, overlap = 0.3715 
    24677 steps = 48, shift = 0.00188, angle = 0.00348 degrees 
    24678  
    24679 Position of postprocess_20231221.mrc (#48) relative to
    24680 postprocess_20231221.mrc (#1) coordinates: 
    24681 Matrix rotation and translation 
    24682 0.99972875 -0.01630667 0.01662903 2.42798953 
    24683 0.01647645 0.99981299 -0.01012473 -7.48955343 
    24684 -0.01646082 0.01039597 0.99981046 -7.14110640 
    24685 Axis 0.40316027 0.65010033 0.64407403 
    24686 Axis point -97.58067328 -0.00000000 -353.42317789 
    24687 Rotation angle (degrees) 1.45832380 
    24688 Shift along axis -8.48949343 
    24689  
    24690 
    24691 > fitmap #48 inMap #1
    24692 
    24693 Fit map postprocess_20231221.mrc in map postprocess_20231221.mrc using 16754
    24694 points 
    24695 correlation = 0.6073, correlation about mean = 0.1526, overlap = 0.3711 
    24696 steps = 40, shift = 0.055, angle = 0.0241 degrees 
    24697  
    24698 Position of postprocess_20231221.mrc (#48) relative to
    24699 postprocess_20231221.mrc (#1) coordinates: 
    24700 Matrix rotation and translation 
    24701 0.99972533 -0.01619964 0.01693647 2.32919760 
    24702 0.01636816 0.99981743 -0.00985898 -7.49097502 
    24703 -0.01677367 0.01013349 0.99980796 -6.97819495 
    24704 Axis 0.39233107 0.66152593 0.63910858 
    24705 Axis point -88.25260490 0.00000000 -335.89244486 
    24706 Rotation angle (degrees) 1.46000177 
    24707 Shift along axis -8.50148186 
    24708  
    24709 
    24710 > combine #38
    24711 
    24712 > close #50
    24713 
    24714 > combine #3
    24715 
    24716 > combine #4
    24717 
    24718 > combine #5
    24719 
    24720 > combine #6
    24721 
    24722 > combine #7
    24723 
    24724 > combine #8
    24725 
    24726 > combine #9
    24727 
    24728 > combine #10
    24729 
    24730 > combine #11
    24731 
    24732 > combine #12
    24733 
    24734 > fitmap #50 inMap #48
    24735 
    24736 Fit molecule copy of CopA_F8WHL2.pdb (#50) to map postprocess_20231221.mrc
    24737 (#48) using 9810 atoms 
    24738 average map value = 0.001845, steps = 100 
    24739 shifted from previous position = 10.6 
    24740 rotated from previous position = 1.5 degrees 
    24741 atoms outside contour = 8562, contour level = 0.0038686 
    24742  
    24743 Position of copy of CopA_F8WHL2.pdb (#50) relative to postprocess_20231221.mrc
    24744 (#48) coordinates: 
    24745 Matrix rotation and translation 
    24746 0.89986795 0.40449377 0.16316389 162.21800882 
    24747 -0.20982329 0.72942358 -0.65108787 244.64306871 
    24748 -0.38237657 0.55165752 0.74125712 239.08371875 
    24749 Axis 0.82573810 0.37453774 -0.42175593 
    24750 Axis point 0.00000000 -323.18738252 438.29584637 
    24751 Rotation angle (degrees) 46.74281473 
    24752 Shift along axis 124.74267766 
    24753  
    24754 
    24755 > fitmap #51 inMap #48
    24756 
    24757 Fit molecule copy of CopB_Q9JIF7.pdb (#51) to map postprocess_20231221.mrc
    24758 (#48) using 7501 atoms 
    24759 average map value = 0.002923, steps = 108 
    24760 shifted from previous position = 11.7 
    24761 rotated from previous position = 4.16 degrees 
    24762 atoms outside contour = 5816, contour level = 0.0038686 
    24763  
    24764 Position of copy of CopB_Q9JIF7.pdb (#51) relative to postprocess_20231221.mrc
    24765 (#48) coordinates: 
    24766 Matrix rotation and translation 
    24767 -0.04198846 -0.73296225 0.67897224 172.35467443 
    24768 -0.03842872 0.68025347 0.73196888 204.56990533 
    24769 -0.99837879 0.00464221 -0.05672960 236.22992719 
    24770 Axis -0.37189487 0.85765897 0.35512716 
    24771 Axis point 209.20957536 0.00000000 -39.72378407 
    24772 Rotation angle (degrees) 102.07736641 
    24773 Shift along axis 195.24505821 
    24774  
    24775 
    24776 > fitmap #52 inMap #48
    24777 
    24778 Fit molecule copy of hArf1_P84078 (#52) to map postprocess_20231221.mrc (#48)
    24779 using 1457 atoms 
    24780 average map value = 0.002588, steps = 80 
    24781 shifted from previous position = 10.3 
    24782 rotated from previous position = 1.47 degrees 
    24783 atoms outside contour = 1414, contour level = 0.0038686 
    24784  
    24785 Position of copy of hArf1_P84078 (#52) relative to postprocess_20231221.mrc
    24786 (#48) coordinates: 
    24787 Matrix rotation and translation 
    24788 0.15747029 0.02364037 0.98724072 126.68344693 
    24789 -0.68701149 -0.71551264 0.12671568 200.57043431 
    24790 0.70937882 -0.69819967 -0.09643077 178.41026657 
    24791 Axis -0.73410147 0.24727243 -0.63241710 
    24792 Axis point 0.00000000 138.29307647 -15.45936629 
    24793 Rotation angle (degrees) 145.81590428 
    24794 Shift along axis -156.23266836 
    24795  
    24796 
    24797 > fitmap #53 inMap #48
    24798 
    24799 Fit molecule copy of hArf1_P84078 (#53) to map postprocess_20231221.mrc (#48)
    24800 using 1457 atoms 
    24801 average map value = 0.003766, steps = 68 
    24802 shifted from previous position = 11.1 
    24803 rotated from previous position = 1.53 degrees 
    24804 atoms outside contour = 827, contour level = 0.0038686 
    24805  
    24806 Position of copy of hArf1_P84078 (#53) relative to postprocess_20231221.mrc
    24807 (#48) coordinates: 
    24808 Matrix rotation and translation 
    24809 -0.84441476 -0.49440268 0.20622727 242.99938249 
    24810 -0.47700141 0.51875180 -0.70948306 195.94811419 
    24811 0.24378956 -0.69746867 -0.67387246 220.55731684 
    24812 Axis 0.27872119 -0.87140571 0.40369120 
    24813 Axis point 151.43808226 0.00000000 157.19336564 
    24814 Rotation angle (degrees) 178.76502585 
    24815 Shift along axis -13.98418102 
    24816  
    24817 
    24818 > fitmap #54 inMap #48
    24819 
    24820 Fit molecule copy of CopBprime_O55029.pdb (#54) to map
    24821 postprocess_20231221.mrc (#48) using 7214 atoms 
    24822 average map value = 0.00312, steps = 92 
    24823 shifted from previous position = 11.3 
    24824 rotated from previous position = 1.45 degrees 
    24825 atoms outside contour = 4652, contour level = 0.0038686 
    24826  
    24827 Position of copy of CopBprime_O55029.pdb (#54) relative to
    24828 postprocess_20231221.mrc (#48) coordinates: 
    24829 Matrix rotation and translation 
    24830 -0.16270160 -0.17511802 -0.97101074 188.50447383 
    24831 -0.01416695 -0.98360781 0.17976365 177.39926418 
    24832 -0.98657361 0.04300409 0.15755367 238.56491900 
    24833 Axis -0.64576341 0.07348611 0.75999304 
    24834 Axis point 189.59583986 85.38839714 0.00000000 
    24835 Rotation angle (degrees) 173.92156405 
    24836 Shift along axis 72.61476818 
    24837  
    24838 
    24839 > fitmap #55 inMap #48
    24840 
    24841 Fit molecule copy of CopD_Q5XJY5 (#55) to map postprocess_20231221.mrc (#48)
    24842 using 1462 atoms 
    24843 average map value = 0.002999, steps = 96 
    24844 shifted from previous position = 1.82 
    24845 rotated from previous position = 26.1 degrees 
    24846 atoms outside contour = 1071, contour level = 0.0038686 
    24847  
    24848 Position of copy of CopD_Q5XJY5 (#55) relative to postprocess_20231221.mrc
    24849 (#48) coordinates: 
    24850 Matrix rotation and translation 
    24851 -0.22365199 0.94640781 0.23300654 -165.73099604 
    24852 -0.84733918 -0.30693575 0.43336679 248.84898866 
    24853 0.48165975 -0.10051222 0.87057520 408.88830413 
    24854 Axis -0.28278127 -0.13170488 -0.95009925 
    24855 Axis point -69.18363529 197.53193420 0.00000000 
    24856 Rotation angle (degrees) 109.26915596 
    24857 Shift along axis -374.39347406 
    24858  
    24859 
    24860 > fitmap #56 inMap #48
    24861 
    24862 Fit molecule copy of CopG_Q9QZE5 (#56) to map postprocess_20231221.mrc (#48)
    24863 using 6673 atoms 
    24864 average map value = 0.002616, steps = 72 
    24865 shifted from previous position = 7.46 
    24866 rotated from previous position = 12.1 degrees 
    24867 atoms outside contour = 5242, contour level = 0.0038686 
    24868  
    24869 Position of copy of CopG_Q9QZE5 (#56) relative to postprocess_20231221.mrc
    24870 (#48) coordinates: 
    24871 Matrix rotation and translation 
    24872 0.38672365 -0.40023335 -0.83081771 216.26930998 
    24873 0.63094855 -0.54221509 0.55489343 287.24095726 
    24874 -0.67256876 -0.73879365 0.04283925 259.15606717 
    24875 Axis -0.77842541 -0.09522009 0.62047322 
    24876 Axis point 0.00000000 226.69812121 118.40040222 
    24877 Rotation angle (degrees) 123.80210140 
    24878 Shift along axis -34.90123560 
    24879  
    24880 
    24881 > fitmap #57 inMap #48
    24882 
    24883 Fit molecule copy of CopZ1_P61924.pdb (#57) to map postprocess_20231221.mrc
    24884 (#48) using 1420 atoms 
    24885 average map value = 0.003311, steps = 80 
    24886 shifted from previous position = 5.47 
    24887 rotated from previous position = 13.7 degrees 
    24888 atoms outside contour = 956, contour level = 0.0038686 
    24889  
    24890 Position of copy of CopZ1_P61924.pdb (#57) relative to
    24891 postprocess_20231221.mrc (#48) coordinates: 
    24892 Matrix rotation and translation 
    24893 0.12580671 -0.94891133 -0.28937861 228.54452918 
    24894 -0.15144065 0.26990781 -0.95090247 253.54454699 
    24895 0.98042767 0.16345359 -0.10974754 228.24940507 
    24896 Axis 0.59648772 -0.67969644 0.42686667 
    24897 Axis point 123.22437247 0.00000000 290.91541660 
    24898 Rotation angle (degrees) 110.91708216 
    24899 Shift along axis 61.42274304 
    24900  
    24901 
    24902 > fitmap #58 inMap #48
    24903 
    24904 Fit molecule copy of Golph3_ Q9CRA5.pdb (#58) to map postprocess_20231221.mrc
    24905 (#48) using 2367 atoms 
    24906 average map value = 0.0031, steps = 64 
    24907 shifted from previous position = 10.2 
    24908 rotated from previous position = 1.46 degrees 
    24909 atoms outside contour = 1837, contour level = 0.0038686 
    24910  
    24911 Position of copy of Golph3_ Q9CRA5.pdb (#58) relative to
    24912 postprocess_20231221.mrc (#48) coordinates: 
    24913 Matrix rotation and translation 
    24914 0.66051665 -0.23635093 0.71264016 198.05029470 
    24915 -0.68930093 -0.56714636 0.45078735 233.23936530 
    24916 0.29762726 -0.78897607 -0.53752653 191.34146193 
    24917 Axis -0.89602686 0.29994650 -0.32736517 
    24918 Axis point 0.00000000 180.17635975 -4.23439426 
    24919 Rotation angle (degrees) 136.22632166 
    24920 Shift along axis -170.13758312 
    24921  
    24922 
    24923 > fitmap #59 inMap #48
    24924 
    24925 Fit molecule copy of CopZ2_Q9CTG7.pdb (#59) to map postprocess_20231221.mrc
    24926 (#48) using 1463 atoms 
    24927 average map value = 0.003943, steps = 76 
    24928 shifted from previous position = 10.4 
    24929 rotated from previous position = 1.46 degrees 
    24930 atoms outside contour = 823, contour level = 0.0038686 
    24931  
    24932 Position of copy of CopZ2_Q9CTG7.pdb (#59) relative to
    24933 postprocess_20231221.mrc (#48) coordinates: 
    24934 Matrix rotation and translation 
    24935 -0.81851164 0.29517532 -0.49285927 229.55933059 
    24936 0.42689991 0.88661239 -0.17797463 242.03214924 
    24937 0.38444141 -0.35607588 -0.85171287 217.28485961 
    24938 Axis -0.19683266 -0.96956889 0.14557843 
    24939 Axis point 58.95883072 0.00000000 149.09790106 
    24940 Rotation angle (degrees) 153.10107885 
    24941 Shift along axis -248.21962617 
    24942  
    24943 
    24944 > hide #!49 models
    24945 
    24946 > hide #50 models
    24947 
    24948 > hide #51 models
    24949 
    24950 > hide #52 models
    24951 
    24952 > hide #53 models
    24953 
    24954 > hide #54 models
    24955 
    24956 > hide #55 models
    24957 
    24958 > hide #!56 models
    24959 
    24960 > hide #57 models
    24961 
    24962 > hide #58 models
    24963 
    24964 > hide #59 models
    24965 
    24966 > surface dust #48 size 25.5
    24967 
    24968 > hide #!48 models
    24969 
    24970 > show #!1 models
    24971 
    24972 > show #!19 models
    24973 
    24974 > fitmap #1 inMap #19
    24975 
    24976 Fit map postprocess_20231221.mrc in map COPI_golph_linkage3_postprocess.mrc
    24977 using 19065 points 
    24978 correlation = 0.8356, correlation about mean = 0.1176, overlap = 85.08 
    24979 steps = 40, shift = 0.351, angle = 0.318 degrees 
    24980  
    24981 Position of postprocess_20231221.mrc (#1) relative to
    24982 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    24983 Matrix rotation and translation 
    24984 0.97200722 -0.23376239 -0.02360336 67.45044917 
    24985 0.21512610 0.84509841 0.48941746 41.67608758 
    24986 -0.09446023 -0.48079500 0.87173014 268.62599873 
    24987 Axis -0.90558109 0.06613669 0.41898548 
    24988 Axis point 0.00000000 490.78061555 77.50615612 
    24989 Rotation angle (degrees) 32.39038011 
    24990 Shift along axis 54.22486091 
    24991  
    24992 
    24993 > fitmap #1 inMap #19
    24994 
    24995 Fit map postprocess_20231221.mrc in map COPI_golph_linkage3_postprocess.mrc
    24996 using 19065 points 
    24997 correlation = 0.8356, correlation about mean = 0.1174, overlap = 85.08 
    24998 steps = 40, shift = 0.0324, angle = 0.0109 degrees 
    24999  
    25000 Position of postprocess_20231221.mrc (#1) relative to
    25001 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    25002 Matrix rotation and translation 
    25003 0.97198583 -0.23385893 -0.02352762 67.44452109 
    25004 0.21518735 0.84515559 0.48929177 41.70226164 
    25005 -0.09454075 -0.48064751 0.87180274 268.61429728 
    25006 Axis -0.90547054 0.06629311 0.41919963 
    25007 Axis point -0.00000000 490.84193607 77.46193790 
    25008 Rotation angle (degrees) 32.38458230 
    25009 Shift along axis 54.29855919 
    25010  
    25011 
    25012 > fitmap #3 inMap #1
    25013 
    25014 Fit molecule CopA_F8WHL2.pdb (#3) to map postprocess_20231221.mrc (#1) using
    25015 9810 atoms 
    25016 average map value = 0.001845, steps = 80 
    25017 shifted from previous position = 0.5 
    25018 rotated from previous position = 0.397 degrees 
    25019 atoms outside contour = 8378, contour level = 0.0036898 
    25020  
    25021 Position of CopA_F8WHL2.pdb (#3) relative to postprocess_20231221.mrc (#1)
    25022 coordinates: 
    25023 Matrix rotation and translation 
    25024 0.90011576 0.40415046 0.16264689 162.21985406 
    25025 -0.20979229 0.72932042 -0.65121342 244.63377968 
    25026 -0.38180990 0.55204540 0.74126045 239.13299028 
    25027 Axis 0.82616958 0.37382949 -0.42153925 
    25028 Axis point 0.00000000 -322.93459090 438.32146602 
    25029 Rotation angle (degrees) 46.73699309 
    25030 Shift along axis 124.66848807 
    25031  
    25032 
    25033 > fitmap #4 inMap #1
    25034 
    25035 Fit molecule CopB_Q9JIF7.pdb (#4) to map postprocess_20231221.mrc (#1) using
    25036 7501 atoms 
    25037 average map value = 0.002923, steps = 88 
    25038 shifted from previous position = 1.13 
    25039 rotated from previous position = 2.89 degrees 
    25040 atoms outside contour = 5658, contour level = 0.0036898 
    25041  
    25042 Position of CopB_Q9JIF7.pdb (#4) relative to postprocess_20231221.mrc (#1)
    25043 coordinates: 
    25044 Matrix rotation and translation 
    25045 -0.04137122 -0.73310739 0.67885343 172.36282746 
    25046 -0.03849848 0.68010022 0.73210761 204.56521857 
    25047 -0.99840187 0.00415336 -0.05636010 236.23248753 
    25048 Axis -0.37218186 0.85753190 0.35513335 
    25049 Axis point 209.31345950 0.00000000 -39.81221265 
    25050 Rotation angle (degrees) 102.05294948 
    25051 Shift along axis 195.16491836 
    25052  
    25053 
    25054 > show #4 models
    25055 
    25056 > show #3 models
    25057 
    25058 > show #5 models
    25059 
    25060 > fitmap #5 inMap #1
    25061 
    25062 Fit molecule hArf1_P84078 (#5) to map postprocess_20231221.mrc (#1) using 1457
    25063 atoms 
    25064 average map value = 0.002587, steps = 48 
    25065 shifted from previous position = 0.374 
    25066 rotated from previous position = 0.337 degrees 
    25067 atoms outside contour = 1384, contour level = 0.0036898 
    25068  
    25069 Position of hArf1_P84078 (#5) relative to postprocess_20231221.mrc (#1)
    25070 coordinates: 
    25071 Matrix rotation and translation 
    25072 0.15811428 0.02321485 0.98714788 126.72177245 
    25073 -0.68699131 -0.71550573 0.12686396 200.57906918 
    25074 0.70925510 -0.69822103 -0.09718328 178.40878833 
    25075 Axis -0.73435020 0.24733284 -0.63210462 
    25076 Axis point 0.00000000 138.30490580 -15.40933580 
    25077 Rotation angle (degrees) 145.82108522 
    25078 Shift along axis -156.22138629 
    25079  
    25080 
    25081 > show #6 models
    25082 
    25083 > fitmap #6 inMap #1
    25084 
    25085 Fit molecule hArf1_P84078 (#6) to map postprocess_20231221.mrc (#1) using 1457
    25086 atoms 
    25087 average map value = 0.003766, steps = 56 
    25088 shifted from previous position = 0.304 
    25089 rotated from previous position = 0.418 degrees 
    25090 atoms outside contour = 776, contour level = 0.0036898 
    25091  
    25092 Position of hArf1_P84078 (#6) relative to postprocess_20231221.mrc (#1)
    25093 coordinates: 
    25094 Matrix rotation and translation 
    25095 -0.84435823 -0.49441709 0.20642408 243.00499479 
    25096 -0.47729838 0.51909518 -0.70903204 195.94467747 
    25097 0.24340382 -0.69720293 -0.67428677 220.56142381 
    25098 Axis 0.27877785 -0.87150473 0.40343825 
    25099 Axis point 151.46502145 0.00000000 157.13713689 
    25100 Rotation angle (degrees) 178.78431992 
    25101 Shift along axis -14.03938787 
    25102  
    25103 
    25104 > show #7 models
    25105 
    25106 > fitmap #7 inMap #1
    25107 
    25108 Fit molecule CopBprime_O55029.pdb (#7) to map postprocess_20231221.mrc (#1)
    25109 using 7214 atoms 
    25110 average map value = 0.00312, steps = 48 
    25111 shifted from previous position = 0.222 
    25112 rotated from previous position = 0.329 degrees 
    25113 atoms outside contour = 4437, contour level = 0.0036898 
    25114  
    25115 Position of CopBprime_O55029.pdb (#7) relative to postprocess_20231221.mrc
    25116 (#1) coordinates: 
    25117 Matrix rotation and translation 
    25118 -0.16289150 -0.17508251 -0.97098531 188.47404673 
    25119 -0.01383314 -0.98362735 0.17968268 177.44291164 
    25120 -0.98654701 0.04270056 0.15780260 238.55506119 
    25121 Axis -0.64568521 0.07335234 0.76007240 
    25122 Axis point 189.54184111 85.44580340 0.00000000 
    25123 Rotation angle (degrees) 173.91089427 
    25124 Shift along axis 72.64006555 
    25125  
    25126 
    25127 > fitmap #7 inMap #1
    25128 
    25129 Fit molecule CopBprime_O55029.pdb (#7) to map postprocess_20231221.mrc (#1)
    25130 using 7214 atoms 
    25131 average map value = 0.00312, steps = 40 
    25132 shifted from previous position = 0.00485 
    25133 rotated from previous position = 0.0121 degrees 
    25134 atoms outside contour = 4437, contour level = 0.0036898 
    25135  
    25136 Position of CopBprime_O55029.pdb (#7) relative to postprocess_20231221.mrc
    25137 (#1) coordinates: 
    25138 Matrix rotation and translation 
    25139 -0.16281971 -0.17504579 -0.97100397 188.47744403 
    25140 -0.01403174 -0.98362611 0.17967409 177.43972685 
    25141 -0.98655605 0.04287936 0.15769752 238.55922073 
    25142 Axis -0.64571671 0.07341102 0.76003997 
    25143 Axis point 189.56315070 85.42306787 0.00000000 
    25144 Rotation angle (degrees) 173.91955374 
    25145 Shift along axis 72.63754008 
    25146  
    25147 
    25148 > show #8 models
    25149 
    25150 > fitmap #8 inMap #1
    25151 
    25152 Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462
    25153 atoms 
    25154 average map value = 0.003728, steps = 48 
    25155 shifted from previous position = 0.235 
    25156 rotated from previous position = 0.36 degrees 
    25157 atoms outside contour = 876, contour level = 0.0036898 
    25158  
    25159 Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1)
    25160 coordinates: 
    25161 Matrix rotation and translation 
    25162 0.23941733 0.93122644 0.27476658 -92.91539761 
    25163 -0.88619480 0.09397695 0.45368174 105.66683335 
    25164 0.39665871 -0.35211598 0.84774773 472.45399925 
    25165 Axis -0.40456161 -0.06119759 -0.91246083 
    25166 Axis point -102.47568113 189.84385384 0.00000000 
    25167 Rotation angle (degrees) 84.80354261 
    25168 Shift along axis -399.97231985 
    25169  
    25170 
    25171 > fitmap #8 inMap #1
    25172 
    25173 Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462
    25174 atoms 
    25175 average map value = 0.003729, steps = 48 
    25176 shifted from previous position = 0.0486 
    25177 rotated from previous position = 0.0245 degrees 
    25178 atoms outside contour = 873, contour level = 0.0036898 
    25179  
    25180 Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1)
    25181 coordinates: 
    25182 Matrix rotation and translation 
    25183 0.23902942 0.93135641 0.27466377 -93.00941180 
    25184 -0.88623957 0.09366294 0.45365922 105.73859422 
    25185 0.39679260 -0.35185580 0.84779310 472.34895334 
    25186 Axis -0.40440757 -0.06131459 -0.91252125 
    25187 Axis point -102.45424420 189.79474542 0.00000000 
    25188 Rotation angle (degrees) 84.82242906 
    25189 Shift along axis -399.89806748 
    25190  
    25191 
    25192 > show #!9 models
    25193 
    25194 > fitmap #9 inMap #1
    25195 
    25196 Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673
    25197 atoms 
    25198 average map value = 0.003524, steps = 60 
    25199 shifted from previous position = 0.672 
    25200 rotated from previous position = 0.357 degrees 
    25201 atoms outside contour = 4570, contour level = 0.0036898 
    25202  
    25203 Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1)
    25204 coordinates: 
    25205 Matrix rotation and translation 
    25206 0.48917059 -0.51138944 -0.70653589 223.55312567 
    25207 0.54924443 -0.44865841 0.70500793 282.28695497 
    25208 -0.67752688 -0.73293005 0.06140730 258.73442159 
    25209 Axis -0.80465553 -0.01623314 0.59351998 
    25210 Axis point 0.00000000 245.05249647 103.84569293 
    25211 Rotation angle (degrees) 116.68212467 
    25212 Shift along axis -30.90161602 
    25213  
    25214 
    25215 > fitmap #9 inMap #1
    25216 
    25217 Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673
    25218 atoms 
    25219 average map value = 0.003524, steps = 44 
    25220 shifted from previous position = 0.0224 
    25221 rotated from previous position = 0.0606 degrees 
    25222 atoms outside contour = 4573, contour level = 0.0036898 
    25223  
    25224 Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1)
    25225 coordinates: 
    25226 Matrix rotation and translation 
    25227 0.48848080 -0.51208562 -0.70650889 223.58707553 
    25228 0.54899718 -0.44897481 0.70499909 282.29529538 
    25229 -0.67822460 -0.73224991 0.06181799 258.73071835 
    25230 Axis -0.80440475 -0.01583026 0.59387069 
    25231 Axis point 0.00000000 245.05530168 103.92806394 
    25232 Rotation angle (degrees) 116.70121957 
    25233 Shift along axis -30.67072406 
    25234  
    25235 
    25236 > show #10 models
    25237 
    25238 > fitmap #10 inMap #1
    25239 
    25240 Fit molecule CopZ1_P61924.pdb (#10) to map postprocess_20231221.mrc (#1) using
    25241 1420 atoms 
    25242 average map value = 0.003933, steps = 48 
    25243 shifted from previous position = 0.582 
    25244 rotated from previous position = 0.356 degrees 
    25245 atoms outside contour = 728, contour level = 0.0036898 
    25246  
    25247 Position of CopZ1_P61924.pdb (#10) relative to postprocess_20231221.mrc (#1)
    25248 coordinates: 
    25249 Matrix rotation and translation 
    25250 0.16485347 -0.93977365 -0.29941414 230.49392590 
    25251 -0.38653362 0.21772848 -0.89620649 241.45930184 
    25252 0.90742223 0.26347638 -0.32736081 218.20262698 
    25253 Axis 0.65787163 -0.68462114 0.31384521 
    25254 Axis point 143.38485457 -0.00000000 249.45112759 
    25255 Rotation angle (degrees) 118.18951155 
    25256 Shift along axis 54.80912228 
    25257  
    25258 
    25259 > fitmap #10 inMap #1
    25260 
    25261 Fit molecule CopZ1_P61924.pdb (#10) to map postprocess_20231221.mrc (#1) using
    25262 1420 atoms 
    25263 average map value = 0.003933, steps = 44 
    25264 shifted from previous position = 0.00907 
    25265 rotated from previous position = 0.0254 degrees 
    25266 atoms outside contour = 728, contour level = 0.0036898 
    25267  
    25268 Position of CopZ1_P61924.pdb (#10) relative to postprocess_20231221.mrc (#1)
    25269 coordinates: 
    25270 Matrix rotation and translation 
    25271 0.16515139 -0.93969311 -0.29950275 230.49951829 
    25272 -0.38625432 0.21779168 -0.89631155 241.46263680 
    25273 0.90748698 0.26371132 -0.32699192 218.19656412 
    25274 Axis 0.65791855 -0.68455628 0.31388833 
    25275 Axis point 143.36744648 0.00000000 249.50084586 
    25276 Rotation angle (degrees) 118.16578701 
    25277 Shift along axis 54.84450072 
    25278  
    25279 
    25280 > show #11 models
    25281 
    25282 > fitmap #11 inMap #1
    25283 
    25284 Fit molecule Golph3_ Q9CRA5.pdb (#11) to map postprocess_20231221.mrc (#1)
    25285 using 2367 atoms 
    25286 average map value = 0.0031, steps = 40 
    25287 shifted from previous position = 0.484 
    25288 rotated from previous position = 0.318 degrees 
    25289 atoms outside contour = 1695, contour level = 0.0036898 
    25290  
    25291 Position of Golph3_ Q9CRA5.pdb (#11) relative to postprocess_20231221.mrc (#1)
    25292 coordinates: 
    25293 Matrix rotation and translation 
    25294 0.66062637 -0.23615777 0.71260249 198.04212837 
    25295 -0.68915421 -0.56722905 0.45090762 233.23273346 
    25296 0.29772350 -0.78897447 -0.53747558 191.33681360 
    25297 Axis -0.89605993 0.29983209 -0.32737948 
    25298 Axis point 0.00000000 180.15544061 -4.23442000 
    25299 Rotation angle (degrees) 136.22309267 
    25300 Shift along axis -170.16670371 
    25301  
    25302 
    25303 > fitmap #11 inMap #1
    25304 
    25305 Fit molecule Golph3_ Q9CRA5.pdb (#11) to map postprocess_20231221.mrc (#1)
    25306 using 2367 atoms 
    25307 average map value = 0.0031, steps = 40 
    25308 shifted from previous position = 0.0105 
    25309 rotated from previous position = 0.0123 degrees 
    25310 atoms outside contour = 1696, contour level = 0.0036898 
    25311  
    25312 Position of Golph3_ Q9CRA5.pdb (#11) relative to postprocess_20231221.mrc (#1)
    25313 coordinates: 
    25314 Matrix rotation and translation 
    25315 0.66052896 -0.23634807 0.71262969 198.04815956 
    25316 -0.68927801 -0.56718464 0.45077422 233.23880784 
    25317 0.29765300 -0.78894941 -0.53755142 191.34107964 
    25318 Axis -0.89603248 0.29993184 -0.32736323 
    25319 Axis point 0.00000000 180.17191035 -4.22943965 
    25320 Rotation angle (degrees) 136.22842742 
    25321 Shift along axis -170.13987198 
    25322  
    25323 
    25324 > show #12 models
    25325 
    25326 > fitmap #12 inMap #1
    25327 
    25328 Fit molecule CopZ2_Q9CTG7.pdb (#12) to map postprocess_20231221.mrc (#1) using
    25329 1463 atoms 
    25330 average map value = 0.003943, steps = 48 
    25331 shifted from previous position = 0.564 
    25332 rotated from previous position = 0.308 degrees 
    25333 atoms outside contour = 792, contour level = 0.0036898 
    25334  
    25335 Position of CopZ2_Q9CTG7.pdb (#12) relative to postprocess_20231221.mrc (#1)
    25336 coordinates: 
    25337 Matrix rotation and translation 
    25338 -0.81874430 0.29468639 -0.49276540 229.57707351 
    25339 0.42646349 0.88676202 -0.17827520 242.04440837 
    25340 0.38443036 -0.35610825 -0.85170432 217.26779618 
    25341 Axis -0.19656816 -0.96961028 0.14566010 
    25342 Axis point 59.00805506 0.00000000 149.10621012 
    25343 Rotation angle (degrees) 153.10579582 
    25344 Shift along axis -248.16903926 
    25345  
    25346 
    25347 > fitmap #12 inMap #1
    25348 
    25349 Fit molecule CopZ2_Q9CTG7.pdb (#12) to map postprocess_20231221.mrc (#1) using
    25350 1463 atoms 
    25351 average map value = 0.003943, steps = 40 
    25352 shifted from previous position = 0.0335 
    25353 rotated from previous position = 0.0211 degrees 
    25354 atoms outside contour = 791, contour level = 0.0036898 
    25355  
    25356 Position of CopZ2_Q9CTG7.pdb (#12) relative to postprocess_20231221.mrc (#1)
    25357 coordinates: 
    25358 Matrix rotation and translation 
    25359 -0.81866518 0.29497106 -0.49272652 229.57125241 
    25360 0.42677568 0.88660223 -0.17832284 242.02908265 
    25361 0.38425235 -0.35627040 -0.85171684 217.29672636 
    25362 Axis -0.19673469 -0.96956748 0.14572013 
    25363 Axis point 58.98526141 0.00000000 149.11804424 
    25364 Rotation angle (degrees) 153.11169842 
    25365 Shift along axis -248.16364946 
    25366  
    25367 
    25368 > hide #12 models
    25369 
    25370 > hide #11 models
    25371 
    25372 > hide #10 models
    25373 
    25374 > hide #!9 models
    25375 
    25376 > hide #8 models
    25377 
    25378 > hide #7 models
    25379 
    25380 > hide #6 models
    25381 
    25382 > hide #5 models
    25383 
    25384 > hide #4 models
    25385 
    25386 > hide #3 models
    25387 
    25388 > show #!2 models
    25389 
    25390 > fitmap #2 inMap #19
    25391 
    25392 Fit map emdb 3720 in map COPI_golph_linkage3_postprocess.mrc using 59756
    25393 points 
    25394 correlation = 0.9221, correlation about mean = 0.1307, overlap = 7982 
    25395 steps = 60, shift = 1.8, angle = 1.99 degrees 
    25396  
    25397 Position of emdb 3720 (#2) relative to COPI_golph_linkage3_postprocess.mrc
    25398 (#19) coordinates: 
    25399 Matrix rotation and translation 
    25400 -0.31594025 0.94479671 -0.08683858 142.25623042 
    25401 -0.83994174 -0.23595976 0.48869302 440.74618377 
    25402 0.44122515 0.22733714 0.86812338 169.14183802 
    25403 Axis -0.13905746 -0.28096250 -0.94959102 
    25404 Axis point 189.74687204 158.49424114 0.00000000 
    25405 Rotation angle (degrees) 109.99196218 
    25406 Shift along axis -304.23050762 
    25407  
    25408 
    25409 > fitmap #2 inMap #19
    25410 
    25411 Fit map emdb 3720 in map COPI_golph_linkage3_postprocess.mrc using 59756
    25412 points 
    25413 correlation = 0.9222, correlation about mean = 0.1314, overlap = 7982 
    25414 steps = 44, shift = 0.0692, angle = 0.0438 degrees 
    25415  
    25416 Position of emdb 3720 (#2) relative to COPI_golph_linkage3_postprocess.mrc
    25417 (#19) coordinates: 
    25418 Matrix rotation and translation 
    25419 -0.31615189 0.94467086 -0.08743537 142.35257321 
    25420 -0.83978742 -0.23578672 0.48904164 440.66001664 
    25421 0.44136729 0.22803856 0.86786712 169.00880070 
    25422 Axis -0.13887768 -0.28137172 -0.94949616 
    25423 Axis point 189.73292704 158.37878100 0.00000000 
    25424 Rotation angle (degrees) 110.00095137 
    25425 Shift along axis -304.23206571 
    25426  
    25427 
    25428 > hide #!1 models
    25429 
    25430 > show #!25 models
    25431 
    25432 > select add #25
    25433 
    25434 2 models selected 
    25435 
    25436 > view matrix models
    25437 > #25,-0.57191,-0.8201,0.019025,107.88,0.72153,-0.51394,-0.46397,240.5,0.39028,-0.25162,0.88565,97.921
    25438 
    25439 > ui mousemode right "rotate selected models"
    25440 
    25441 > view matrix models
    25442 > #25,-0.97643,0.20843,-0.05603,40.105,-0.18476,-0.9414,-0.28218,371.44,-0.11156,-0.26518,0.95772,147.33
    25443 
    25444 > view matrix models
    25445 > #25,0.38166,-0.92429,-0.0044408,15.551,0.42044,0.17788,-0.88971,244.28,0.82314,0.3377,0.4565,31.494
    25446 
    25447 > ui mousemode right "translate selected models"
    25448 
    25449 > view matrix models
    25450 > #25,0.38166,-0.92429,-0.0044408,463.08,0.42044,0.17788,-0.88971,150.43,0.82314,0.3377,0.4565,69.094
    25451 
    25452 > view matrix models
    25453 > #25,0.38166,-0.92429,-0.0044408,472.3,0.42044,0.17788,-0.88971,144.63,0.82314,0.3377,0.4565,54.578
    25454 
    25455 > view matrix models
    25456 > #25,0.38166,-0.92429,-0.0044408,462.57,0.42044,0.17788,-0.88971,156.68,0.82314,0.3377,0.4565,47.084
    25457 
    25458 > fitmap #25 inMap #19
    25459 
    25460 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    25461 using 65799 points 
    25462 correlation = 0.9188, correlation about mean = 0.141, overlap = 8478 
    25463 steps = 84, shift = 4.7, angle = 7.97 degrees 
    25464  
    25465 Position of emd_3720_2017_leaf.map (#25) relative to
    25466 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    25467 Matrix rotation and translation 
    25468 0.31594010 -0.94484317 0.08633230 402.08767860 
    25469 0.84006149 0.23628301 -0.48833090 103.52010046 
    25470 0.44099725 0.22680775 0.86837762 169.21551421 
    25471 Axis 0.36574862 -0.18138890 0.91286692 
    25472 Axis point 62.17270241 271.09250194 0.00000000 
    25473 Rotation angle (degrees) 77.86004514 
    25474 Shift along axis 282.75686127 
    25475  
    25476 
    25477 > fitmap #25 inMap #19
    25478 
    25479 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    25480 using 65799 points 
    25481 correlation = 0.9188, correlation about mean = 0.1411, overlap = 8478 
    25482 steps = 60, shift = 0.0604, angle = 0.0187 degrees 
    25483  
    25484 Position of emd_3720_2017_leaf.map (#25) relative to
    25485 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    25486 Matrix rotation and translation 
    25487 0.31589866 -0.94483161 0.08660999 402.09680047 
    25488 0.84018832 0.23616260 -0.48817090 103.45853133 
    25489 0.44078525 0.22698124 0.86843992 169.19285447 
    25490 Axis 0.36575152 -0.18113647 0.91291588 
    25491 Axis point 62.28097693 271.01210874 0.00000000 
    25492 Rotation angle (degrees) 77.86296205 
    25493 Shift along axis 282.78624492 
    25494  
    25495 
    25496 > fitmap #25 inMap #19
    25497 
    25498 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    25499 using 65799 points 
    25500 correlation = 0.9188, correlation about mean = 0.1412, overlap = 8478 
    25501 steps = 44, shift = 0.06, angle = 0.0158 degrees 
    25502  
    25503 Position of emd_3720_2017_leaf.map (#25) relative to
    25504 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    25505 Matrix rotation and translation 
    25506 0.31598273 -0.94482437 0.08638198 402.05546991 
    25507 0.84007328 0.23630678 -0.48829911 103.48150335 
    25508 0.44094424 0.22686128 0.86839056 169.18732136 
    25509 Axis 0.36576293 -0.18133797 0.91287131 
    25510 Axis point 62.19547617 271.05309880 0.00000000 
    25511 Rotation angle (degrees) 77.85772053 
    25512 Shift along axis 282.73811193 
    25513  
    25514 
    25515 > select subtract #25
    25516 
    25517 Nothing selected 
    25518 
    25519 > hide #!25 models
    25520 
    25521 > show #!25 models
    25522 
    25523 > show #!37 models
    25524 
    25525 > select add #37
    25526 
    25527 2 models selected 
    25528 
    25529 > view matrix models
    25530 > #37,-0.61824,-0.62388,-0.47807,233.58,0.7555,-0.30392,-0.58039,107.22,0.2168,-0.72,0.65924,222.03
    25531 
    25532 > ui mousemode right "rotate selected models"
    25533 
    25534 > view matrix models
    25535 > #37,-0.97159,0.19811,0.12949,103.65,-0.23662,-0.8022,-0.54817,275.26,-0.0047197,-0.56324,0.82628,208.66
    25536 
    25537 > ui mousemode right "rotate selected models"
    25538 
    25539 > view matrix models
    25540 > #37,-0.92877,0.12598,-0.3486,163.85,0.19226,-0.64034,-0.74364,230.44,-0.31691,-0.75769,0.57051,297.42
    25541 
    25542 > ui mousemode right "translate selected models"
    25543 
    25544 > view matrix models
    25545 > #37,-0.92877,0.12598,-0.3486,336.71,0.19226,-0.64034,-0.74364,370.23,-0.31691,-0.75769,0.57051,333.6
    25546 
    25547 > view matrix models
    25548 > #37,-0.92877,0.12598,-0.3486,339.32,0.19226,-0.64034,-0.74364,351.83,-0.31691,-0.75769,0.57051,326.89
    25549 
    25550 > ui mousemode right "rotate selected models"
    25551 
    25552 > view matrix models
    25553 > #37,0.63887,-0.75644,0.14015,209.6,0.57739,0.35108,-0.73713,189,0.50839,0.55186,0.66106,66.313
    25554 
    25555 > ui mousemode right "translate selected models"
    25556 
    25557 > view matrix models
    25558 > #37,0.63887,-0.75644,0.14015,238.84,0.57739,0.35108,-0.73713,187.7,0.50839,0.55186,0.66106,80.453
    25559 
    25560 > view matrix models
    25561 > #37,0.63887,-0.75644,0.14015,230.99,0.57739,0.35108,-0.73713,188.41,0.50839,0.55186,0.66106,73.947
    25562 
    25563 > ui mousemode right "rotate selected models"
    25564 
    25565 > view matrix models
    25566 > #37,0.53263,-0.77516,-0.33975,301.9,0.65601,0.63176,-0.41296,107.7,0.53475,-0.0029237,0.845,115.54
    25567 
    25568 > view matrix models
    25569 > #37,0.6883,-0.50769,-0.51817,273.39,0.57831,0.81525,-0.030575,49.438,0.43796,-0.27862,0.85473,158.28
    25570 
    25571 > ui mousemode right "translate selected models"
    25572 
    25573 > view matrix models
    25574 > #37,0.6883,-0.50769,-0.51817,271.67,0.57831,0.81525,-0.030575,58.164,0.43796,-0.27862,0.85473,149.69
    25575 
    25576 > fitmap #37 inMap #19
    25577 
    25578 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    25579 using 93502 points 
    25580 correlation = 0.8126, correlation about mean = 0.06345, overlap = 7612 
    25581 steps = 180, shift = 34.6, angle = 32.7 degrees 
    25582  
    25583 Position of emd_3720_2017_leaf.map (#37) relative to
    25584 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    25585 Matrix rotation and translation 
    25586 0.53128525 -0.28140419 -0.79909177 250.52694837 
    25587 0.67839952 0.70628678 0.20231920 51.77405293 
    25588 0.50745449 -0.64959268 0.56614422 275.41479911 
    25589 Axis -0.46516877 -0.71341241 0.52408086 
    25590 Axis point -192.25802356 0.00000000 420.96828822 
    25591 Rotation angle (degrees) 66.30560952 
    25592 Shift along axis -9.13393909 
    25593  
    25594 
    25595 > view matrix models
    25596 > #37,0.61278,-0.057933,-0.78813,278.4,0.19994,0.97623,0.083696,78.478,0.76454,-0.20887,0.60979,125.69
    25597 
    25598 > view matrix models
    25599 > #37,0.61278,-0.057933,-0.78813,290.82,0.19994,0.97623,0.083696,69.562,0.76454,-0.20887,0.60979,135.95
    25600 
    25601 > fitmap #37 inMap #19
    25602 
    25603 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    25604 using 93502 points 
    25605 correlation = 0.8127, correlation about mean = 0.06331, overlap = 7612 
    25606 steps = 88, shift = 19.4, angle = 0.0108 degrees 
    25607  
    25608 Position of emd_3720_2017_leaf.map (#37) relative to
    25609 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    25610 Matrix rotation and translation 
    25611 0.53122006 -0.28153083 -0.79909050 250.54765948 
    25612 0.67853284 0.70616928 0.20228226 51.80360254 
    25613 0.50734447 -0.64966555 0.56615921 275.39206228 
    25614 Axis -0.46516969 -0.71332299 0.52420174 
    25615 Axis point -192.24664318 0.00000000 421.00099641 
    25616 Rotation angle (degrees) 66.31085613 
    25617 Shift along axis -9.13887938 
    25618  
    25619 
    25620 > select subtract #37
    25621 
    25622 Nothing selected 
    25623 
    25624 > hide #!37 models
    25625 
    25626 > open "/Users/becca/Desktop/Postdoc/Structure files/COPI
    25627 > structures/5a1x_COPI_coat_linkage3_2015.cif.gz"
    25628 
    25629 File reader requires uncompressed file;
    25630 '/Users/becca/Desktop/Postdoc/Structure files/COPI
    25631 structures/5a1x_COPI_coat_linkage3_2015.cif.gz' is compressed 
    25632 
    25633 > open "/Users/becca/Desktop/Postdoc/Structure files/COPI
    25634 > structures/5a1x_COPI_coat_linkage3_2015.cif"
    25635 
    25636 5a1x_COPI_coat_linkage3_2015.cif title: 
    25637 The structure of the COPI coat linkage III [more info...] 
    25638  
    25639 Chain information for 5a1x_COPI_coat_linkage3_2015.cif #60 
    25640 --- 
    25641 Chain | Description | UniProt 
    25642 A B I J | ADP-RIBOSYLATION FACTOR 1 | ARF1_YEAST 1-181 
    25643 C K | COATOMER SUBUNIT ALPHA | COPA_MOUSE 1-1224 
    25644 D L | COATOMER SUBUNIT BETA' | COPB2_MOUSE 1-905 
    25645 E M | COATOMER SUBUNIT GAMMA-1 | COPG1_MOUSE 1-874 
    25646 F N | COATOMER SUBUNIT ZETA-1 | COPZ1_MOUSE 1-177 
    25647 G O | COATOMER SUBUNIT BETA | COPB_MOUSE 1-968 
    25648 H P Q | COATOMER SUBUNIT DELTA | COPD_MOUSE 1-511 
    25649  
    25650 
    25651 > hide #!60 atoms
    25652 
    25653 > show #!60 cartoons
    25654 
    25655 > hide #60.1 models
    25656 
    25657 > show #60.1 models
    25658 
    25659 > hide #60.1 models
    25660 
    25661 > show #60.1 models
    25662 
    25663 > hide #60.1 models
    25664 
    25665 > show #60.1 models
    25666 
    25667 > select add #60
    25668 
    25669 32592 atoms, 32570 bonds, 5 pseudobonds, 8151 residues, 2 models selected 
    25670 
    25671 > view matrix models #60,1,0,0,278.7,0,1,0,292.71,0,0,1,295.39
    25672 
    25673 > hide #!19 models
    25674 
    25675 > view matrix models #60,1,0,0,283.2,0,1,0,309.7,0,0,1,307.52
    25676 
    25677 > ui mousemode right "rotate selected models"
    25678 
    25679 > view matrix models
    25680 > #60,0.30395,-0.95232,-0.026433,298.99,0.90553,0.29742,-0.30259,232.3,0.29602,0.068037,0.95276,290.94
    25681 
    25682 > view matrix models
    25683 > #60,0.30764,-0.9412,-0.1396,298.51,0.87798,0.33735,-0.33961,234.95,0.36674,-0.018089,0.93015,284.01
    25684 
    25685 > ui mousemode right "translate selected models"
    25686 
    25687 > view matrix models
    25688 > #60,0.30764,-0.9412,-0.1396,472.74,0.87798,0.33735,-0.33961,184.2,0.36674,-0.018089,0.93015,328.4
    25689 
    25690 > select subtract #60
    25691 
    25692 Nothing selected 
    25693 
    25694 > show #50 models
    25695 
    25696 > hide #50 models
    25697 
    25698 > show #50 models
    25699 
    25700 > hide #50 models
    25701 
    25702 > show #50 models
    25703 
    25704 > hide #50 models
    25705 
    25706 > show #50 models
    25707 
    25708 > hide #50 models
    25709 
    25710 > show #50 models
    25711 
    25712 > hide #50 models
    25713 
    25714 > show #50 models
    25715 
    25716 > select add #60
    25717 
    25718 32592 atoms, 32570 bonds, 5 pseudobonds, 8151 residues, 2 models selected 
    25719 
    25720 > ui mousemode right "rotate selected models"
    25721 
    25722 > view matrix models
    25723 > #60,0.71806,0.1644,-0.67629,476.17,-0.57073,0.69522,-0.43697,283.37,0.39833,0.69975,0.59303,345.19
    25724 
    25725 > ui mousemode right "translate selected models"
    25726 
    25727 > view matrix models
    25728 > #60,0.71806,0.1644,-0.67629,301.94,-0.57073,0.69522,-0.43697,317.81,0.39833,0.69975,0.59303,291
    25729 
    25730 > view matrix models
    25731 > #60,0.71806,0.1644,-0.67629,271.07,-0.57073,0.69522,-0.43697,408.75,0.39833,0.69975,0.59303,320.31
    25732 
    25733 > ui mousemode right "rotate selected models"
    25734 
    25735 > view matrix models
    25736 > #60,0.39633,0.84407,-0.3612,311.83,-0.91749,0.34975,-0.18942,421.58,-0.033549,0.40647,0.91305,340.24
    25737 
    25738 > view matrix models
    25739 > #60,0.36213,0.89583,-0.2576,315.92,-0.93213,0.34741,-0.10221,422.85,-0.0020647,0.27713,0.96083,334.85
    25740 
    25741 > ui mousemode right "translate selected models"
    25742 
    25743 > view matrix models
    25744 > #60,0.36213,0.89583,-0.2576,282.84,-0.93213,0.34741,-0.10221,406.37,-0.0020647,0.27713,0.96083,302.27
    25745 
    25746 > ui mousemode right "rotate selected models"
    25747 
    25748 > view matrix models
    25749 > #60,-0.29442,0.93069,-0.21709,324.59,-0.93376,-0.32852,-0.14204,387.06,-0.20351,0.16089,0.96576,311.43
    25750 
    25751 > ui mousemode right "translate selected models"
    25752 
    25753 > view matrix models
    25754 > #60,-0.29442,0.93069,-0.21709,308,-0.93376,-0.32852,-0.14204,396.26,-0.20351,0.16089,0.96576,298.11
    25755 
    25756 > view matrix models
    25757 > #60,-0.29442,0.93069,-0.21709,313.22,-0.93376,-0.32852,-0.14204,387.45,-0.20351,0.16089,0.96576,306.51
    25758 
    25759 > hide #50 models
    25760 
    25761 > select subtract #60
    25762 
    25763 Nothing selected 
    25764 
    25765 > select add #60
    25766 
    25767 32592 atoms, 32570 bonds, 5 pseudobonds, 8151 residues, 2 models selected 
    25768 
    25769 > view matrix models
    25770 > #60,-0.29442,0.93069,-0.21709,185.5,-0.93376,-0.32852,-0.14204,270.05,-0.20351,0.16089,0.96576,181.41
    25771 
    25772 > select subtract #60
    25773 
    25774 Nothing selected 
    25775 
    25776 > show #!56 models
    25777 
    25778 > hide #!56 models
    25779 
    25780 > show #!56 models
    25781 
    25782 > hide #!56 models
    25783 
    25784 > show #!56 models
    25785 
    25786 > hide #!56 models
    25787 
    25788 > show #54 models
    25789 
    25790 > hide #54 models
    25791 
    25792 > show #54 models
    25793 
    25794 > hide #54 models
    25795 
    25796 > show #54 models
    25797 
    25798 > hide #!25 models
    25799 
    25800 > show #!25 models
    25801 
    25802 > hide #!2 models
    25803 
    25804 > show #!2 models
    25805 
    25806 > select add #60
    25807 
    25808 32592 atoms, 32570 bonds, 5 pseudobonds, 8151 residues, 2 models selected 
    25809 
    25810 > ui mousemode right "rotate selected models"
    25811 
    25812 > view matrix models
    25813 > #60,0.69872,0.078126,-0.71112,97.473,0.24248,0.90932,0.33815,234.97,0.67305,-0.40871,0.61641,109.34
    25814 
    25815 > view matrix models
    25816 > #60,0.69338,0.088487,-0.71511,98.077,0.24277,0.90572,0.34747,234.9,0.67844,-0.41454,0.60653,108.79
    25817 
    25818 > ui mousemode right "translate selected models"
    25819 
    25820 > view matrix models
    25821 > #60,0.69338,0.088487,-0.71511,288.6,0.24277,0.90572,0.34747,273.74,0.67844,-0.41454,0.60653,261.75
    25822 
    25823 > view matrix models
    25824 > #60,0.69338,0.088487,-0.71511,293.77,0.24277,0.90572,0.34747,295.88,0.67844,-0.41454,0.60653,304.94
    25825 
    25826 > select subtract #60
    25827 
    25828 Nothing selected 
    25829 
    25830 > hide #!25 models
    25831 
    25832 > hide #!2 models
    25833 
    25834 > select add #60
    25835 
    25836 32592 atoms, 32570 bonds, 5 pseudobonds, 8151 residues, 2 models selected 
    25837 
    25838 > ui mousemode right "rotate selected models"
    25839 
    25840 > view matrix models
    25841 > #60,0.86942,-0.22536,0.43968,279.7,0.40591,0.83316,-0.3756,280.16,-0.28168,0.50503,0.81585,391.43
    25842 
    25843 > ui mousemode right "translate selected models"
    25844 
    25845 > view matrix models
    25846 > #60,0.86942,-0.22536,0.43968,269.02,0.40591,0.83316,-0.3756,273.58,-0.28168,0.50503,0.81585,316.65
    25847 
    25848 > ui mousemode right "rotate selected models"
    25849 
    25850 > view matrix models
    25851 > #60,0.099844,-0.98449,-0.14427,292.07,0.84964,0.15982,-0.50257,226.4,0.51783,-0.072399,0.85242,251.03
    25852 
    25853 > ui mousemode right "translate selected models"
    25854 
    25855 > view matrix models
    25856 > #60,0.099844,-0.98449,-0.14427,298.05,0.84964,0.15982,-0.50257,272.51,0.51783,-0.072399,0.85242,290.42
    25857 
    25858 > view matrix models
    25859 > #60,0.099844,-0.98449,-0.14427,300.25,0.84964,0.15982,-0.50257,276.15,0.51783,-0.072399,0.85242,305.68
    25860 
    25861 > ui mousemode right "rotate selected models"
    25862 
    25863 > view matrix models
    25864 > #60,-0.29969,-0.86037,-0.41226,327.13,0.79371,0.014914,-0.60811,274.96,0.52934,-0.50946,0.67841,291.68
    25865 
    25866 > ui mousemode right "translate selected models"
    25867 
    25868 > view matrix models
    25869 > #60,-0.29969,-0.86037,-0.41226,330,0.79371,0.014914,-0.60811,274.56,0.52934,-0.50946,0.67841,304.12
    25870 
    25871 > view matrix models
    25872 > #60,-0.29969,-0.86037,-0.41226,326.7,0.79371,0.014914,-0.60811,276.86,0.52934,-0.50946,0.67841,295.37
    25873 
    25874 > ui mousemode right "rotate selected models"
    25875 
    25876 > view matrix models
    25877 > #60,-0.16482,-0.96487,0.20459,318.46,-0.25356,-0.15901,-0.95416,334.88,0.95317,-0.20914,-0.21845,273.29
    25878 
    25879 > view matrix models
    25880 > #60,-0.22265,-0.9332,-0.28208,320.52,0.95497,-0.15056,-0.25568,263.94,0.19613,-0.3263,0.92469,322.38
    25881 
    25882 > ui mousemode right "translate selected models"
    25883 
    25884 > view matrix models
    25885 > #60,-0.22265,-0.9332,-0.28208,318.22,0.95497,-0.15056,-0.25568,248.03,0.19613,-0.3263,0.92469,316.64
    25886 
    25887 > view matrix models
    25888 > #60,-0.22265,-0.9332,-0.28208,324.94,0.95497,-0.15056,-0.25568,247.07,0.19613,-0.3263,0.92469,301.89
    25889 
    25890 > ui mousemode right "rotate selected models"
    25891 
    25892 > view matrix models
    25893 > #60,-0.10757,-0.99405,0.01717,317.59,0.87094,-0.10255,-0.48057,252.51,0.47948,-0.03674,0.87679,292.39
    25894 
    25895 > ui mousemode right "translate selected models"
    25896 
    25897 > view matrix models
    25898 > #60,-0.10757,-0.99405,0.01717,309.12,0.87094,-0.10255,-0.48057,265.96,0.47948,-0.03674,0.87679,287.59
    25899 
    25900 > view matrix models
    25901 > #60,-0.10757,-0.99405,0.01717,308.58,0.87094,-0.10255,-0.48057,269.36,0.47948,-0.03674,0.87679,297.99
    25902 
    25903 > view matrix models
    25904 > #60,-0.10757,-0.99405,0.01717,306.6,0.87094,-0.10255,-0.48057,265.23,0.47948,-0.03674,0.87679,295.2
    25905 
    25906 > hide #54 models
    25907 
    25908 > show #54 models
    25909 
    25910 > hide #54 models
    25911 
    25912 > show #54 models
    25913 
    25914 > view matrix models
    25915 > #60,-0.10757,-0.99405,0.01717,195.57,0.87094,-0.10255,-0.48057,229.02,0.47948,-0.03674,0.87679,322.68
    25916 
    25917 > view matrix models
    25918 > #60,-0.10757,-0.99405,0.01717,177.13,0.87094,-0.10255,-0.48057,181.04,0.47948,-0.03674,0.87679,302.25
    25919 
    25920 > ui mousemode right "rotate selected models"
    25921 
    25922 > view matrix models
    25923 > #60,0.67938,-0.71254,0.17532,137.31,0.73214,0.64222,-0.22698,212.05,0.049136,0.28257,0.95799,338.31
    25924 
    25925 > view matrix models
    25926 > #60,0.35741,-0.93101,0.074016,150.48,0.88939,0.31509,-0.33122,192.52,0.28505,0.18421,0.94065,320.86
    25927 
    25928 > view matrix models
    25929 > #60,0.0062061,-0.99848,0.054808,170.16,0.81786,-0.026469,-0.57481,186.02,0.57538,0.048393,0.81645,298.45
    25930 
    25931 > ui mousemode right "translate selected models"
    25932 
    25933 > view matrix models
    25934 > #60,0.0062061,-0.99848,0.054808,300.16,0.81786,-0.026469,-0.57481,269.53,0.57538,0.048393,0.81645,290.76
    25935 
    25936 > ui mousemode right "rotate selected models"
    25937 
    25938 > view matrix models
    25939 > #60,-0.1471,-0.98798,0.047428,309.89,0.96301,-0.15399,-0.22113,258.69,0.22577,0.013147,0.97409,312.14
    25940 
    25941 > view matrix models
    25942 > #60,-0.25612,-0.79759,-0.54612,319.1,0.75336,0.1893,-0.62977,279.38,0.60569,-0.57273,0.55239,269.92
    25943 
    25944 > ui mousemode right "translate selected models"
    25945 
    25946 > view matrix models
    25947 > #60,-0.25612,-0.79759,-0.54612,334.29,0.75336,0.1893,-0.62977,287.43,0.60569,-0.57273,0.55239,310.88
    25948 
    25949 > ui mousemode right "rotate selected models"
    25950 
    25951 > view matrix models
    25952 > #60,-0.28394,-0.86187,0.4202,338.97,-0.030703,-0.42984,-0.90238,316.9,0.95835,-0.26912,0.095586,295.47
    25953 
    25954 > ui mousemode right "translate selected models"
    25955 
    25956 > view matrix models
    25957 > #60,-0.28394,-0.86187,0.4202,331.17,-0.030703,-0.42984,-0.90238,321.67,0.95835,-0.26912,0.095586,273.13
    25958 
    25959 > view matrix models
    25960 > #60,-0.28394,-0.86187,0.4202,309.08,-0.030703,-0.42984,-0.90238,343.32,0.95835,-0.26912,0.095586,285.64
    25961 
    25962 > ui mousemode right "rotate selected models"
    25963 
    25964 > view matrix models
    25965 > #60,0.38051,-0.71783,-0.58304,267.17,0.76466,0.5988,-0.2382,326.73,0.52011,-0.35519,0.77674,313.64
    25966 
    25967 > view matrix models
    25968 > #60,0.089963,-0.91854,-0.38495,280.39,0.93121,0.21466,-0.29458,305.24,0.35322,-0.33196,0.87466,325.09
    25969 
    25970 > ui mousemode right "translate selected models"
    25971 
    25972 > view matrix models
    25973 > #60,0.089963,-0.91854,-0.38495,279.17,0.93121,0.21466,-0.29458,308.48,0.35322,-0.33196,0.87466,312.14
    25974 
    25975 > view matrix models
    25976 > #60,0.089963,-0.91854,-0.38495,313.17,0.93121,0.21466,-0.29458,275.27,0.35322,-0.33196,0.87466,284.81
    25977 
    25978 > ui mousemode right "rotate selected models"
    25979 
    25980 > view matrix models
    25981 > #60,-0.58428,0.80232,0.12208,406.26,0.81034,0.56857,0.1417,294.96,0.044277,0.18172,-0.98235,309.3
    25982 
    25983 > view matrix models
    25984 > #60,-0.98665,0.015404,0.16213,408.94,0.13439,0.63936,0.75708,341.77,-0.091998,0.76876,-0.63289,336.14
    25985 
    25986 > view matrix models
    25987 > #60,-0.93577,-0.24632,-0.25233,396.3,-0.29531,0.93848,0.17903,373.95,0.19271,0.24204,-0.95094,302.01
    25988 
    25989 > view matrix models
    25990 > #60,-0.93453,-0.24826,-0.255,396.15,-0.29745,0.93826,0.17664,374.07,0.1954,0.24092,-0.95067,301.81
    25991 
    25992 > ui mousemode right "translate selected models"
    25993 
    25994 > view matrix models
    25995 > #60,-0.93453,-0.24826,-0.255,320.41,-0.29745,0.93826,0.17664,311,0.1954,0.24092,-0.95067,315.49
    25996 
    25997 > view matrix models
    25998 > #60,-0.93453,-0.24826,-0.255,321.63,-0.29745,0.93826,0.17664,283.92,0.1954,0.24092,-0.95067,330.32
    25999 
    26000 > view matrix models
    26001 > #60,-0.93453,-0.24826,-0.255,330.19,-0.29745,0.93826,0.17664,277.68,0.1954,0.24092,-0.95067,357.4
    26002 
    26003 > ui mousemode right "rotate selected models"
    26004 
    26005 > view matrix models
    26006 > #60,-0.86274,-0.40741,-0.29951,321.01,-0.50398,0.74096,0.44383,286.15,0.041104,0.53386,-0.84457,375.79
    26007 
    26008 > view matrix models
    26009 > #60,-0.91726,-0.29906,-0.26304,327.64,-0.36609,0.89321,0.26108,281.05,0.15687,0.33578,-0.92879,362.59
    26010 
    26011 > view matrix models
    26012 > #60,0.46859,-0.5126,0.71949,240.83,-0.34056,0.64667,0.68252,274.55,-0.81514,-0.56485,0.12845,402.25
    26013 
    26014 > view matrix models
    26015 > #60,-0.511,0.62905,-0.58581,327.33,-0.84789,-0.25685,0.4638,279.12,0.14129,0.73371,0.66462,382.76
    26016 
    26017 > view matrix models
    26018 > #60,-0.076799,0.98714,0.14022,314.29,0.81552,0.1431,-0.56076,182.67,-0.57362,0.071289,-0.81602,400.74
    26019 
    26020 > view matrix models
    26021 > #60,0.37987,-0.2661,-0.88594,245.37,0.91291,0.26241,0.31262,184.37,0.14929,-0.92754,0.34261,333.43
    26022 
    26023 > view matrix models
    26024 > #60,0.24379,-0.61027,-0.75375,244.64,0.96341,0.063127,0.26049,175.33,-0.11139,-0.78967,0.60333,354.74
    26025 
    26026 > ui mousemode right "translate selected models"
    26027 
    26028 > view matrix models
    26029 > #60,0.24379,-0.61027,-0.75375,254.27,0.96341,0.063127,0.26049,213.46,-0.11139,-0.78967,0.60333,338.98
    26030 
    26031 > view matrix models
    26032 > #60,0.24379,-0.61027,-0.75375,186.67,0.96341,0.063127,0.26049,196.79,-0.11139,-0.78967,0.60333,285.3
    26033 
    26034 > view matrix models
    26035 > #60,0.24379,-0.61027,-0.75375,184.49,0.96341,0.063127,0.26049,192.05,-0.11139,-0.78967,0.60333,302.12
    26036 
    26037 > ui mousemode right "rotate selected models"
    26038 
    26039 > view matrix models
    26040 > #60,0.1646,-0.7403,-0.65181,186.19,0.97953,0.20033,0.019833,193.76,0.11589,-0.64173,0.75812,293.05
    26041 
    26042 > view matrix models
    26043 > #60,0.17244,0.13692,-0.97546,209.04,0.54681,0.81038,0.21041,238.78,0.8193,-0.56968,0.064879,248.22
    26044 
    26045 > hide #54 models
    26046 
    26047 > show #54 models
    26048 
    26049 > select subtract #60
    26050 
    26051 Nothing selected 
    26052 
    26053 > select add #60
    26054 
    26055 32592 atoms, 32570 bonds, 5 pseudobonds, 8151 residues, 2 models selected 
    26056 
    26057 > ui mousemode right "translate selected models"
    26058 
    26059 > view matrix models
    26060 > #60,0.17244,0.13692,-0.97546,247.1,0.54681,0.81038,0.21041,312.98,0.8193,-0.56968,0.064879,179.83
    26061 
    26062 > view matrix models
    26063 > #60,0.17244,0.13692,-0.97546,243.27,0.54681,0.81038,0.21041,317.9,0.8193,-0.56968,0.064879,170.53
    26064 
    26065 > ui mousemode right "rotate selected models"
    26066 
    26067 > view matrix models
    26068 > #60,0.33024,0.062073,-0.94185,231.57,0.32582,0.92901,0.17547,334.75,0.88588,-0.36482,0.28657,173.34
    26069 
    26070 > view matrix models
    26071 > #60,0.091972,0.19299,-0.97688,249.83,0.65733,0.72514,0.20514,308.62,0.74797,-0.661,-0.060164,171.72
    26072 
    26073 > view matrix models
    26074 > #60,0.42223,0.037289,-0.90572,225.36,0.1947,0.97211,0.13079,343.85,0.88533,-0.23156,0.40319,177.74
    26075 
    26076 > ui mousemode right "translate selected models"
    26077 
    26078 > view matrix models
    26079 > #60,0.42223,0.037289,-0.90572,209.96,0.1947,0.97211,0.13079,368.39,0.88533,-0.23156,0.40319,222.12
    26080 
    26081 > view matrix models
    26082 > #60,0.42223,0.037289,-0.90572,213.37,0.1947,0.97211,0.13079,374.19,0.88533,-0.23156,0.40319,214.42
    26083 
    26084 > view matrix models
    26085 > #60,0.42223,0.037289,-0.90572,223.35,0.1947,0.97211,0.13079,376.8,0.88533,-0.23156,0.40319,223.94
    26086 
    26087 > view matrix models
    26088 > #60,0.42223,0.037289,-0.90572,220.66,0.1947,0.97211,0.13079,374.3,0.88533,-0.23156,0.40319,226.27
    26089 
    26090 > view matrix models
    26091 > #60,0.42223,0.037289,-0.90572,219.31,0.1947,0.97211,0.13079,377.5,0.88533,-0.23156,0.40319,221.97
    26092 
    26093 > ui mousemode right "rotate selected models"
    26094 
    26095 > view matrix models
    26096 > #60,0.46204,0.027203,-0.88644,216.66,0.10583,0.9907,0.085565,383.3,0.88052,-0.13335,0.45486,225.31
    26097 
    26098 > ui mousemode right "translate selected models"
    26099 
    26100 > view matrix models
    26101 > #60,0.46204,0.027203,-0.88644,216.5,0.10583,0.9907,0.085565,383.3,0.88052,-0.13335,0.45486,234.52
    26102 
    26103 > select subtract #60
    26104 
    26105 Nothing selected 
    26106 
    26107 > hide #54 models
    26108 
    26109 > show #!1 models
    26110 
    26111 > hide #!1 models
    26112 
    26113 > show #!2 models
    26114 
    26115 > show #!25 models
    26116 
    26117 > show #!19 models
    26118 
    26119 > hide #!25 models
    26120 
    26121 > show #!25 models
    26122 
    26123 > hide #!19 models
    26124 
    26125 > show #30 models
    26126 
    26127 > hide #30 models
    26128 
    26129 > show #30 models
    26130 
    26131 > hide #30 models
    26132 
    26133 > hide #!25 models
    26134 
    26135 > show #!25 models
    26136 
    26137 > hide #!25 models
    26138 
    26139 > show #!25 models
    26140 
    26141 > hide #!25 models
    26142 
    26143 > show #!25 models
    26144 
    26145 > hide #!60 models
    26146 
    26147 > hide #!25 models
    26148 
    26149 > show #!1 models
    26150 
    26151 > surface dust #2 size 17.8
    26152 
    26153 > surface dust #1 size 25.5
    26154 
    26155 > fitmap #2 inMap #1
    26156 
    26157 Fit map emdb 3720 in map postprocess_20231221.mrc using 59756 points 
    26158 correlation = 0.7167, correlation about mean = 0.2039, overlap = 49.32 
    26159 steps = 88, shift = 2.05, angle = 2.09 degrees 
    26160  
    26161 Position of emdb 3720 (#2) relative to postprocess_20231221.mrc (#1)
    26162 coordinates: 
    26163 Matrix rotation and translation 
    26164 -0.53789413 0.84247923 -0.02997756 166.41351370 
    26165 -0.84288398 -0.53809272 0.00168124 370.29314647 
    26166 -0.01471430 0.02617193 0.99954916 111.75105961 
    26167 Axis 0.01452927 -0.00905503 -0.99985344 
    26168 Axis point 185.19765373 138.59553433 0.00000000 
    26169 Rotation angle (degrees) 122.56246994 
    26170 Shift along axis -112.66983142 
    26171  
    26172 
    26173 > fitmap #2 inMap #1
    26174 
    26175 Fit map emdb 3720 in map postprocess_20231221.mrc using 59756 points 
    26176 correlation = 0.7166, correlation about mean = 0.2038, overlap = 49.31 
    26177 steps = 60, shift = 0.0304, angle = 0.00646 degrees 
    26178  
    26179 Position of emdb 3720 (#2) relative to postprocess_20231221.mrc (#1)
    26180 coordinates: 
    26181 Matrix rotation and translation 
    26182 -0.53786301 0.84250231 -0.02988718 166.41268452 
    26183 -0.84290388 -0.53806172 0.00162510 370.29411574 
    26184 -0.01471200 0.02606610 0.99955196 111.78773883 
    26185 Axis 0.01449944 -0.00900256 -0.99985435 
    26186 Axis point 185.20219904 138.59778405 0.00000000 
    26187 Rotation angle (degrees) 122.56026340 
    26188 Shift along axis -112.69216210 
    26189  
    26190 
    26191 > fitmap #2 inMap #1
    26192 
    26193 Fit map emdb 3720 in map postprocess_20231221.mrc using 59756 points 
    26194 correlation = 0.7166, correlation about mean = 0.2039, overlap = 49.31 
    26195 steps = 64, shift = 0.0403, angle = 0.0199 degrees 
    26196  
    26197 Position of emdb 3720 (#2) relative to postprocess_20231221.mrc (#1)
    26198 coordinates: 
    26199 Matrix rotation and translation 
    26200 -0.53813091 0.84232814 -0.02997387 166.43542003 
    26201 -0.84273361 -0.53832799 0.00174126 370.29897186 
    26202 -0.01466906 0.02619701 0.99954917 111.76451127 
    26203 Axis 0.01451114 -0.00908131 -0.99985347 
    26204 Axis point 185.17478882 138.60667507 0.00000000 
    26205 Rotation angle (degrees) 122.57851683 
    26206 Shift along axis -112.69576575 
    26207  
    26208 
    26209 > fitmap #1 inMap #19
    26210 
    26211 Fit map postprocess_20231221.mrc in map COPI_golph_linkage3_postprocess.mrc
    26212 using 19065 points 
    26213 correlation = 0.8356, correlation about mean = 0.1175, overlap = 85.08 
    26214 steps = 44, shift = 0.0201, angle = 0.00901 degrees 
    26215  
    26216 Position of postprocess_20231221.mrc (#1) relative to
    26217 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    26218 Matrix rotation and translation 
    26219 0.97198715 -0.23384369 -0.02362457 67.46579987 
    26220 0.21520905 0.84508851 0.48939808 41.67837632 
    26221 -0.09447780 -0.48077287 0.87174044 268.62322175 
    26222 Axis -0.90551614 0.06613137 0.41912666 
    26223 Axis point 0.00000000 490.75832581 77.51050191 
    26224 Rotation angle (degrees) 32.39143179 
    26225 Shift along axis 54.25203054 
    26226  
    26227 
    26228 > fitmap #1 inMap #19
    26229 
    26230 Fit map postprocess_20231221.mrc in map COPI_golph_linkage3_postprocess.mrc
    26231 using 19065 points 
    26232 correlation = 0.8357, correlation about mean = 0.1179, overlap = 85.08 
    26233 steps = 28, shift = 0.0623, angle = 0.00755 degrees 
    26234  
    26235 Position of postprocess_20231221.mrc (#1) relative to
    26236 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    26237 Matrix rotation and translation 
    26238 0.97200433 -0.23378289 -0.02351911 67.46302473 
    26239 0.21510985 0.84513634 0.48935908 41.68304002 
    26240 -0.09452693 -0.48071834 0.87176519 268.66471165 
    26241 Axis -0.90554845 0.06628442 0.41903266 
    26242 Axis point 0.00000000 490.91186598 77.52461595 
    26243 Rotation angle (degrees) 32.38663105 
    26244 Shift along axis 54.25118840 
    26245  
    26246 
    26247 > fitmap #2 inMap #19
    26248 
    26249 Fit map emdb 3720 in map COPI_golph_linkage3_postprocess.mrc using 59756
    26250 points 
    26251 correlation = 0.9222, correlation about mean = 0.1315, overlap = 7982 
    26252 steps = 60, shift = 2.05, angle = 2.07 degrees 
    26253  
    26254 Position of emdb 3720 (#2) relative to COPI_golph_linkage3_postprocess.mrc
    26255 (#19) coordinates: 
    26256 Matrix rotation and translation 
    26257 -0.31624299 0.94466933 -0.08712193 142.35985490 
    26258 -0.83977736 -0.23603650 0.48893841 440.70447209 
    26259 0.44132116 0.22778637 0.86795680 169.02922082 
    26260 Axis -0.13896370 -0.28119408 -0.94953619 
    26261 Axis point 189.74284311 158.42726910 0.00000000 
    26262 Rotation angle (degrees) 110.00860971 
    26263 Shift along axis -304.20570262 
    26264  
    26265 
    26266 > fitmap #2 inMap #19
    26267 
    26268 Fit map emdb 3720 in map COPI_golph_linkage3_postprocess.mrc using 59756
    26269 points 
    26270 correlation = 0.9221, correlation about mean = 0.1309, overlap = 7982 
    26271 steps = 96, shift = 0.0548, angle = 0.0155 degrees 
    26272  
    26273 Position of emdb 3720 (#2) relative to COPI_golph_linkage3_postprocess.mrc
    26274 (#19) coordinates: 
    26275 Matrix rotation and translation 
    26276 -0.31605739 0.94474379 -0.08698794 142.29294605 
    26277 -0.83986531 -0.23596231 0.48882313 440.71948710 
    26278 0.44128675 0.22755432 0.86803517 169.10135286 
    26279 Axis -0.13901673 -0.28108605 -0.94956041 
    26280 Axis point 189.73624545 158.46025452 0.00000000 
    26281 Rotation angle (degrees) 109.99830030 
    26282 Shift along axis -304.23315163 
    26283  
    26284 
    26285 > hide #!2 models
    26286 
    26287 > show #3 models
    26288 
    26289 > show #4 models
    26290 
    26291 > show #5 models
    26292 
    26293 > show #6 models
    26294 
    26295 > show #7 models
    26296 
    26297 > show #8 models
    26298 
    26299 > show #!9 models
    26300 
    26301 > show #10 models
    26302 
    26303 > show #11 models
    26304 
    26305 > show #12 models
    26306 
    26307 > fitmap #4 inMap #1
    26308 
    26309 Fit molecule CopB_Q9JIF7.pdb (#4) to map postprocess_20231221.mrc (#1) using
    26310 7501 atoms 
    26311 average map value = 0.002923, steps = 84 
    26312 shifted from previous position = 0.0382 
    26313 rotated from previous position = 0.0452 degrees 
    26314 atoms outside contour = 5658, contour level = 0.0036898 
    26315  
    26316 Position of CopB_Q9JIF7.pdb (#4) relative to postprocess_20231221.mrc (#1)
    26317 coordinates: 
    26318 Matrix rotation and translation 
    26319 -0.04204199 -0.73290824 0.67902723 172.35762146 
    26320 -0.03854177 0.68031195 0.73190859 204.57850055 
    26321 -0.99837218 0.00459998 -0.05684925 236.22466685 
    26322 Axis -0.37189030 0.85769447 0.35504620 
    26323 Axis point 209.20864402 0.00000000 -39.70487813 
    26324 Rotation angle (degrees) 102.08072677 
    26325 Shift along axis 195.23839065 
    26326  
    26327 
    26328 > fitmap #5 inMap #1
    26329 
    26330 Fit molecule hArf1_P84078 (#5) to map postprocess_20231221.mrc (#1) using 1457
    26331 atoms 
    26332 average map value = 0.002588, steps = 60 
    26333 shifted from previous position = 0.0738 
    26334 rotated from previous position = 0.0442 degrees 
    26335 atoms outside contour = 1386, contour level = 0.0036898 
    26336  
    26337 Position of hArf1_P84078 (#5) relative to postprocess_20231221.mrc (#1)
    26338 coordinates: 
    26339 Matrix rotation and translation 
    26340 0.15805659 0.02390284 0.98714070 126.72720553 
    26341 -0.68664804 -0.71576226 0.12727467 200.56733706 
    26342 0.70960029 -0.69793483 -0.09671810 178.42654262 
    26343 Axis -0.73431574 0.24697036 -0.63228635 
    26344 Axis point 0.00000000 138.25648299 -15.42719634 
    26345 Rotation angle (degrees) 145.81338808 
    26346 Shift along axis -156.34026119 
    26347  
    26348 
    26349 > fitmap #6 inMap #1
    26350 
    26351 Fit molecule hArf1_P84078 (#6) to map postprocess_20231221.mrc (#1) using 1457
    26352 atoms 
    26353 average map value = 0.003766, steps = 60 
    26354 shifted from previous position = 0.106 
    26355 rotated from previous position = 0.0911 degrees 
    26356 atoms outside contour = 772, contour level = 0.0036898 
    26357  
    26358 Position of hArf1_P84078 (#6) relative to postprocess_20231221.mrc (#1)
    26359 coordinates: 
    26360 Matrix rotation and translation 
    26361 -0.84467256 -0.49408118 0.20594182 243.02027542 
    26362 -0.47641085 0.51849497 -0.71006735 195.90966661 
    26363 0.24405112 -0.69788733 -0.67334412 220.58487971 
    26364 Axis 0.27848415 -0.87133155 0.40401475 
    26365 Axis point 151.39777962 0.00000000 157.26095359 
    26366 Rotation angle (degrees) 178.74693150 
    26367 Shift along axis -13.90543314 
    26368  
    26369 
    26370 > fitmap #7 inMap #1
    26371 
    26372 Fit molecule CopBprime_O55029.pdb (#7) to map postprocess_20231221.mrc (#1)
    26373 using 7214 atoms 
    26374 average map value = 0.00312, steps = 40 
    26375 shifted from previous position = 0.0457 
    26376 rotated from previous position = 0.0115 degrees 
    26377 atoms outside contour = 4439, contour level = 0.0036898 
    26378  
    26379 Position of CopBprime_O55029.pdb (#7) relative to postprocess_20231221.mrc
    26380 (#1) coordinates: 
    26381 Matrix rotation and translation 
    26382 -0.16297840 -0.17495258 -0.97099415 188.47156436 
    26383 -0.01390854 -0.98364743 0.17956694 177.44655545 
    26384 -0.98653160 0.04277064 0.15787995 238.55752250 
    26385 Axis -0.64565482 0.07333407 0.76009997 
    26386 Axis point 189.54120913 85.43977118 0.00000000 
    26387 Rotation angle (degrees) 173.91889861 
    26388 Shift along axis 72.65287052 
    26389  
    26390 
    26391 > fitmap #8 inMap #1
    26392 
    26393 Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462
    26394 atoms 
    26395 average map value = 0.003729, steps = 44 
    26396 shifted from previous position = 0.0408 
    26397 rotated from previous position = 0.102 degrees 
    26398 atoms outside contour = 873, contour level = 0.0036898 
    26399  
    26400 Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1)
    26401 coordinates: 
    26402 Matrix rotation and translation 
    26403 0.23790045 0.93128065 0.27589806 -92.98880965 
    26404 -0.88673422 0.09232665 0.45296603 106.05943164 
    26405 0.39636576 -0.35240907 0.84776296 472.48610183 
    26406 Axis -0.40429175 -0.06047381 -0.91262868 
    26407 Axis point -102.10995577 189.95035402 0.00000000 
    26408 Rotation angle (degrees) 84.89420555 
    26409 Shift along axis -400.02357488 
    26410  
    26411 
    26412 > fitmap #9 inMap #1
    26413 
    26414 Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673
    26415 atoms 
    26416 average map value = 0.003524, steps = 44 
    26417 shifted from previous position = 0.0457 
    26418 rotated from previous position = 0.0581 degrees 
    26419 atoms outside contour = 4569, contour level = 0.0036898 
    26420  
    26421 Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1)
    26422 coordinates: 
    26423 Matrix rotation and translation 
    26424 0.48924720 -0.51142655 -0.70645598 223.52473516 
    26425 0.54885976 -0.44895469 0.70511888 282.30607954 
    26426 -0.67778325 -0.73272271 0.06105163 258.73819061 
    26427 Axis -0.80473185 -0.01604757 0.59342154 
    26428 Axis point 0.00000000 245.03242129 103.85502366 
    26429 Rotation angle (degrees) 116.70057308 
    26430 Shift along axis -30.86698566 
    26431  
    26432 
    26433 > fitmap #10 inMap #1
    26434 
    26435 Fit molecule CopZ1_P61924.pdb (#10) to map postprocess_20231221.mrc (#1) using
    26436 1420 atoms 
    26437 average map value = 0.003933, steps = 36 
    26438 shifted from previous position = 0.0572 
    26439 rotated from previous position = 0.0173 degrees 
    26440 atoms outside contour = 728, contour level = 0.0036898 
    26441  
    26442 Position of CopZ1_P61924.pdb (#10) relative to postprocess_20231221.mrc (#1)
    26443 coordinates: 
    26444 Matrix rotation and translation 
    26445 0.16498590 -0.93978539 -0.29930433 230.49900822 
    26446 -0.38648480 0.21759238 -0.89626060 241.46307367 
    26447 0.90741895 0.26354694 -0.32731309 218.19582622 
    26448 Axis 0.65793354 -0.68454782 0.31387536 
    26449 Axis point 143.40944771 0.00000000 249.46139423 
    26450 Rotation angle (degrees) 118.18808002 
    26451 Shift along axis 54.84630101 
    26452  
    26453 
    26454 > fitmap #11 inMap #1
    26455 
    26456 Fit molecule Golph3_ Q9CRA5.pdb (#11) to map postprocess_20231221.mrc (#1)
    26457 using 2367 atoms 
    26458 average map value = 0.0031, steps = 44 
    26459 shifted from previous position = 0.0573 
    26460 rotated from previous position = 0.0141 degrees 
    26461 atoms outside contour = 1696, contour level = 0.0036898 
    26462  
    26463 Position of Golph3_ Q9CRA5.pdb (#11) relative to postprocess_20231221.mrc (#1)
    26464 coordinates: 
    26465 Matrix rotation and translation 
    26466 0.66065701 -0.23605314 0.71260875 198.04675678 
    26467 -0.68911945 -0.56720356 0.45099280 233.23742276 
    26468 0.29773596 -0.78902410 -0.53739582 191.34041376 
    26469 Axis -0.89606552 0.29979689 -0.32739642 
    26470 Axis point 0.00000000 180.15753978 -4.24457588 
    26471 Rotation angle (degrees) 136.21746581 
    26472 Shift along axis -170.18318361 
    26473  
    26474 
    26475 > fitmap #12 inMap #1
    26476 
    26477 Fit molecule CopZ2_Q9CTG7.pdb (#12) to map postprocess_20231221.mrc (#1) using
    26478 1463 atoms 
    26479 average map value = 0.003943, steps = 28 
    26480 shifted from previous position = 0.0629 
    26481 rotated from previous position = 0.0252 degrees 
    26482 atoms outside contour = 792, contour level = 0.0036898 
    26483  
    26484 Position of CopZ2_Q9CTG7.pdb (#12) relative to postprocess_20231221.mrc (#1)
    26485 coordinates: 
    26486 Matrix rotation and translation 
    26487 -0.81886103 0.29484741 -0.49247503 229.58746104 
    26488 0.42642015 0.88682129 -0.17808393 242.05348233 
    26489 0.38422975 -0.35582726 -0.85191226 217.25273350 
    26490 Axis -0.19658273 -0.96962860 0.14551842 
    26491 Axis point 59.03709533 0.00000000 149.06603571 
    26492 Rotation angle (degrees) 153.12260873 
    26493 Shift along axis -248.22063449 
    26494  
    26495 
    26496 > hide #12 models
    26497 
    26498 > hide #11 models
    26499 
    26500 > hide #10 models
    26501 
    26502 > hide #!9 models
    26503 
    26504 > hide #8 models
    26505 
    26506 > hide #7 models
    26507 
    26508 > hide #6 models
    26509 
    26510 > hide #5 models
    26511 
    26512 > hide #4 models
    26513 
    26514 > hide #3 models
    26515 
    26516 > hide #!1 models
    26517 
    26518 > show #!2 models
    26519 
    26520 > show #!1 models
    26521 
    26522 > hide #!2 models
    26523 
    26524 > hide #!1 models
    26525 
    26526 > show #!2 models
    26527 
    26528 > show #!1 models
    26529 
    26530 > hide #!1 models
    26531 
    26532 > hide #!2 models
    26533 
    26534 > show #!19 models
    26535 
    26536 > show #!2 models
    26537 
    26538 > hide #!2 models
    26539 
    26540 > show #!2 models
    26541 
    26542 > show #!25 models
    26543 
    26544 > hide #!19 models
    26545 
    26546 > show #!24 models
    26547 
    26548 > show #26 models
    26549 
    26550 > hide #26 models
    26551 
    26552 > show #26 models
    26553 
    26554 > show #27 models
    26555 
    26556 > show #28 models
    26557 
    26558 > show #29 models
    26559 
    26560 > hide #29 models
    26561 
    26562 > hide #28 models
    26563 
    26564 > hide #27 models
    26565 
    26566 > hide #26 models
    26567 
    26568 > show #26 models
    26569 
    26570 > show #27 models
    26571 
    26572 > show #28 models
    26573 
    26574 > show #29 models
    26575 
    26576 > show #30 models
    26577 
    26578 > show #31 models
    26579 
    26580 > show #!32 models
    26581 
    26582 > show #33 models
    26583 
    26584 > show #34 models
    26585 
    26586 > show #35 models
    26587 
    26588 > hide #35 models
    26589 
    26590 > hide #34 models
    26591 
    26592 > hide #33 models
    26593 
    26594 > hide #!32 models
    26595 
    26596 > hide #31 models
    26597 
    26598 > hide #30 models
    26599 
    26600 > hide #29 models
    26601 
    26602 > hide #28 models
    26603 
    26604 > hide #27 models
    26605 
    26606 > hide #26 models
    26607 
    26608 > select add #24
    26609 
    26610 2 models selected 
    26611 
    26612 > select add #26
    26613 
    26614 9810 atoms, 10032 bonds, 1233 residues, 3 models selected 
    26615 
    26616 > select add #27
    26617 
    26618 17311 atoms, 17651 bonds, 2186 residues, 4 models selected 
    26619 
    26620 > select add #28
    26621 
    26622 18768 atoms, 19134 bonds, 2367 residues, 5 models selected 
    26623 
    26624 > select add #29
    26625 
    26626 20225 atoms, 20617 bonds, 2548 residues, 6 models selected 
    26627 
    26628 > select add #30
    26629 
    26630 27439 atoms, 27990 bonds, 3453 residues, 7 models selected 
    26631 
    26632 > select add #31
    26633 
    26634 28901 atoms, 29471 bonds, 3632 residues, 8 models selected 
    26635 
    26636 > select add #32
    26637 
    26638 35574 atoms, 36257 bonds, 1 pseudobond, 4485 residues, 10 models selected 
    26639 
    26640 > select add #33
    26641 
    26642 36994 atoms, 37698 bonds, 1 pseudobond, 4662 residues, 11 models selected 
    26643 
    26644 > select add #34
    26645 
    26646 39361 atoms, 40096 bonds, 1 pseudobond, 4960 residues, 12 models selected 
    26647 
    26648 > select add #35
    26649 
    26650 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 13 models selected 
    26651 
    26652 > view matrix models
    26653 > #24,-0.16054,-0.65409,-0.73919,747.86,0.86063,-0.45943,0.21963,119.99,-0.48326,-0.60091,0.63669,187.05,#26,0.27527,-0.94991,-0.14796,385.04,0.78709,0.13431,0.60204,199.74,-0.55202,-0.28219,0.78463,113.9,#27,0.76996,-0.33035,-0.54591,411.76,-0.23736,-0.94244,0.23553,226.23,-0.59229,-0.051766,-0.80406,131.24,#28,-0.10092,0.98032,-0.16967,464.43,0.60766,0.19577,0.76969,176.08,0.78776,-0.02542,-0.61546,118.91,#29,0.26753,0.25509,0.92917,417.64,-0.45429,-0.81702,0.3551,287.56,0.84974,-0.51711,-0.1027,92.309,#30,0.76456,0.6398,-0.078118,425.21,-0.35018,0.31057,-0.8837,253.12,-0.54113,0.70299,0.4615,141.24,#31,0.58668,0.23131,-0.77608,343.11,0.44484,0.70875,0.54753,94.817,0.67669,-0.66646,0.31291,475.89,#32,0.063391,0.91735,-0.39301,336.08,0.019728,-0.39487,-0.91852,239.53,-0.99779,0.050473,-0.043129,74.118,#33,-0.44402,-0.18537,0.87663,391.63,0.51881,-0.85086,0.082864,255.36,0.73053,0.4916,0.47397,69.452,#34,0.12403,0.9922,-0.012537,422.1,0.95076,-0.11522,0.28771,225.29,0.28402,-0.047605,-0.95764,73.033,#35,-0.43145,-0.36473,0.82512,392.09,-0.81639,-0.23133,-0.52914,254.09,0.38387,-0.90192,-0.19795,68.983
    26654 
    26655 > view matrix models
    26656 > #24,-0.16054,-0.65409,-0.73919,703.34,0.86063,-0.45943,0.21963,40.394,-0.48326,-0.60091,0.63669,261.37,#26,0.27527,-0.94991,-0.14796,340.53,0.78709,0.13431,0.60204,120.14,-0.55202,-0.28219,0.78463,188.22,#27,0.76996,-0.33035,-0.54591,367.25,-0.23736,-0.94244,0.23553,146.63,-0.59229,-0.051766,-0.80406,205.56,#28,-0.10092,0.98032,-0.16967,419.92,0.60766,0.19577,0.76969,96.476,0.78776,-0.02542,-0.61546,193.22,#29,0.26753,0.25509,0.92917,373.13,-0.45429,-0.81702,0.3551,207.96,0.84974,-0.51711,-0.1027,166.62,#30,0.76456,0.6398,-0.078118,380.7,-0.35018,0.31057,-0.8837,173.52,-0.54113,0.70299,0.4615,215.55,#31,0.58668,0.23131,-0.77608,298.6,0.44484,0.70875,0.54753,15.218,0.67669,-0.66646,0.31291,550.2,#32,0.063391,0.91735,-0.39301,291.56,0.019728,-0.39487,-0.91852,159.93,-0.99779,0.050473,-0.043129,148.43,#33,-0.44402,-0.18537,0.87663,347.12,0.51881,-0.85086,0.082864,175.76,0.73053,0.4916,0.47397,143.77,#34,0.12403,0.9922,-0.012537,377.59,0.95076,-0.11522,0.28771,145.69,0.28402,-0.047605,-0.95764,147.35,#35,-0.43145,-0.36473,0.82512,347.57,-0.81639,-0.23133,-0.52914,174.49,0.38387,-0.90192,-0.19795,143.3
    26657 
    26658 > ui mousemode right "rotate selected models"
    26659 
    26660 > view matrix models
    26661 > #24,-0.90809,0.28081,0.31067,454.69,-0.41493,-0.70354,-0.57694,554.12,0.056559,-0.65282,0.7554,123.12,#26,-0.99491,0.0089671,-0.10039,450.36,-0.0052843,-0.99931,-0.03689,176.73,-0.10066,-0.036172,0.99426,153.23,#27,-0.28319,0.85799,-0.42856,429,0.62049,-0.17682,-0.76402,202.38,-0.7313,-0.48228,-0.48229,177.78,#28,-0.11625,-0.43906,-0.8909,451.39,0.00785,0.89655,-0.44287,257.49,0.99319,-0.058476,-0.10077,134.14,#29,0.70867,0.37799,-0.59574,357.56,0.54548,0.242,0.80243,188.18,0.44748,-0.89362,-0.034683,175.57,#30,-0.16277,-0.10384,0.98118,407.43,0.64654,0.73996,0.18557,213.45,-0.74531,0.66459,-0.053313,198.18,#31,-0.21503,-0.97071,-0.10715,719.32,0.66103,-0.063903,-0.74763,246.26,0.71889,-0.23159,0.65541,411.34,#32,-0.50044,0.1108,0.85865,411.32,-0.19814,0.9508,-0.23817,113.48,-0.84279,-0.28932,-0.45387,146.93,#33,0.023605,0.99631,-0.082554,380.94,-0.31959,0.085764,0.94367,162.7,0.94726,0.0041083,0.32044,143.32,#34,-0.70113,-0.19067,-0.68707,399.79,0.038256,0.95214,-0.30327,197.5,0.71201,-0.23892,-0.66028,126.6,#35,0.9827,-0.12958,0.13233,381.67,-0.18193,-0.54138,0.82086,163.22,-0.03472,-0.83073,-0.55559,142.2
    26662 
    26663 > ui mousemode right "translate selected models"
    26664 
    26665 > view matrix models
    26666 > #24,-0.90809,0.28081,0.31067,423.38,-0.41493,-0.70354,-0.57694,466.16,0.056559,-0.65282,0.7554,172.1,#26,-0.99491,0.0089671,-0.10039,419.05,-0.0052843,-0.99931,-0.03689,88.778,-0.10066,-0.036172,0.99426,202.22,#27,-0.28319,0.85799,-0.42856,397.7,0.62049,-0.17682,-0.76402,114.43,-0.7313,-0.48228,-0.48229,226.76,#28,-0.11625,-0.43906,-0.8909,420.08,0.00785,0.89655,-0.44287,169.54,0.99319,-0.058476,-0.10077,183.12,#29,0.70867,0.37799,-0.59574,326.25,0.54548,0.242,0.80243,100.22,0.44748,-0.89362,-0.034683,224.55,#30,-0.16277,-0.10384,0.98118,376.13,0.64654,0.73996,0.18557,125.49,-0.74531,0.66459,-0.053313,247.16,#31,-0.21503,-0.97071,-0.10715,688.02,0.66103,-0.063903,-0.74763,158.31,0.71889,-0.23159,0.65541,460.33,#32,-0.50044,0.1108,0.85865,380.02,-0.19814,0.9508,-0.23817,25.526,-0.84279,-0.28932,-0.45387,195.91,#33,0.023605,0.99631,-0.082554,349.64,-0.31959,0.085764,0.94367,74.75,0.94726,0.0041083,0.32044,192.31,#34,-0.70113,-0.19067,-0.68707,368.49,0.038256,0.95214,-0.30327,109.54,0.71201,-0.23892,-0.66028,175.59,#35,0.9827,-0.12958,0.13233,350.37,-0.18193,-0.54138,0.82086,75.267,-0.03472,-0.83073,-0.55559,191.19
    26667 
    26668 > view matrix models
    26669 > #24,-0.90809,0.28081,0.31067,455.75,-0.41493,-0.70354,-0.57694,495.16,0.056559,-0.65282,0.7554,174.25,#26,-0.99491,0.0089671,-0.10039,451.42,-0.0052843,-0.99931,-0.03689,117.78,-0.10066,-0.036172,0.99426,204.37,#27,-0.28319,0.85799,-0.42856,430.07,0.62049,-0.17682,-0.76402,143.43,-0.7313,-0.48228,-0.48229,228.91,#28,-0.11625,-0.43906,-0.8909,452.45,0.00785,0.89655,-0.44287,198.54,0.99319,-0.058476,-0.10077,185.27,#29,0.70867,0.37799,-0.59574,358.62,0.54548,0.242,0.80243,129.23,0.44748,-0.89362,-0.034683,226.7,#30,-0.16277,-0.10384,0.98118,408.49,0.64654,0.73996,0.18557,154.5,-0.74531,0.66459,-0.053313,249.31,#31,-0.21503,-0.97071,-0.10715,720.39,0.66103,-0.063903,-0.74763,187.31,0.71889,-0.23159,0.65541,462.48,#32,-0.50044,0.1108,0.85865,412.39,-0.19814,0.9508,-0.23817,54.528,-0.84279,-0.28932,-0.45387,198.06,#33,0.023605,0.99631,-0.082554,382.01,-0.31959,0.085764,0.94367,103.75,0.94726,0.0041083,0.32044,194.46,#34,-0.70113,-0.19067,-0.68707,400.86,0.038256,0.95214,-0.30327,138.54,0.71201,-0.23892,-0.66028,177.74,#35,0.9827,-0.12958,0.13233,382.74,-0.18193,-0.54138,0.82086,104.27,-0.03472,-0.83073,-0.55559,193.34
    26670 
    26671 > view matrix models
    26672 > #24,-0.90809,0.28081,0.31067,457.66,-0.41493,-0.70354,-0.57694,496.68,0.056559,-0.65282,0.7554,178.02,#26,-0.99491,0.0089671,-0.10039,453.32,-0.0052843,-0.99931,-0.03689,119.3,-0.10066,-0.036172,0.99426,208.14,#27,-0.28319,0.85799,-0.42856,431.97,0.62049,-0.17682,-0.76402,144.95,-0.7313,-0.48228,-0.48229,232.68,#28,-0.11625,-0.43906,-0.8909,454.36,0.00785,0.89655,-0.44287,200.06,0.99319,-0.058476,-0.10077,189.04,#29,0.70867,0.37799,-0.59574,360.53,0.54548,0.242,0.80243,130.74,0.44748,-0.89362,-0.034683,230.47,#30,-0.16277,-0.10384,0.98118,410.4,0.64654,0.73996,0.18557,156.01,-0.74531,0.66459,-0.053313,253.08,#31,-0.21503,-0.97071,-0.10715,722.29,0.66103,-0.063903,-0.74763,188.83,0.71889,-0.23159,0.65541,466.24,#32,-0.50044,0.1108,0.85865,414.29,-0.19814,0.9508,-0.23817,56.047,-0.84279,-0.28932,-0.45387,201.83,#33,0.023605,0.99631,-0.082554,383.91,-0.31959,0.085764,0.94367,105.27,0.94726,0.0041083,0.32044,198.23,#34,-0.70113,-0.19067,-0.68707,402.76,0.038256,0.95214,-0.30327,140.06,0.71201,-0.23892,-0.66028,181.5,#35,0.9827,-0.12958,0.13233,384.64,-0.18193,-0.54138,0.82086,105.79,-0.03472,-0.83073,-0.55559,197.11
    26673 
    26674 > view matrix models
    26675 > #24,-0.90809,0.28081,0.31067,456.98,-0.41493,-0.70354,-0.57694,465.87,0.056559,-0.65282,0.7554,205.31,#26,-0.99491,0.0089671,-0.10039,452.65,-0.0052843,-0.99931,-0.03689,88.485,-0.10066,-0.036172,0.99426,235.42,#27,-0.28319,0.85799,-0.42856,431.3,0.62049,-0.17682,-0.76402,114.14,-0.7313,-0.48228,-0.48229,259.96,#28,-0.11625,-0.43906,-0.8909,453.68,0.00785,0.89655,-0.44287,169.24,0.99319,-0.058476,-0.10077,216.33,#29,0.70867,0.37799,-0.59574,359.85,0.54548,0.242,0.80243,99.93,0.44748,-0.89362,-0.034683,257.76,#30,-0.16277,-0.10384,0.98118,409.72,0.64654,0.73996,0.18557,125.2,-0.74531,0.66459,-0.053313,280.37,#31,-0.21503,-0.97071,-0.10715,721.61,0.66103,-0.063903,-0.74763,158.02,0.71889,-0.23159,0.65541,493.53,#32,-0.50044,0.1108,0.85865,413.61,-0.19814,0.9508,-0.23817,25.233,-0.84279,-0.28932,-0.45387,229.12,#33,0.023605,0.99631,-0.082554,383.23,-0.31959,0.085764,0.94367,74.456,0.94726,0.0041083,0.32044,225.51,#34,-0.70113,-0.19067,-0.68707,402.08,0.038256,0.95214,-0.30327,109.25,0.71201,-0.23892,-0.66028,208.79,#35,0.9827,-0.12958,0.13233,383.97,-0.18193,-0.54138,0.82086,74.973,-0.03472,-0.83073,-0.55559,224.39
    26676 
    26677 > view matrix models
    26678 > #24,-0.90809,0.28081,0.31067,464.53,-0.41493,-0.70354,-0.57694,464.91,0.056559,-0.65282,0.7554,199.73,#26,-0.99491,0.0089671,-0.10039,460.2,-0.0052843,-0.99931,-0.03689,87.525,-0.10066,-0.036172,0.99426,229.84,#27,-0.28319,0.85799,-0.42856,438.84,0.62049,-0.17682,-0.76402,113.18,-0.7313,-0.48228,-0.48229,254.38,#28,-0.11625,-0.43906,-0.8909,461.23,0.00785,0.89655,-0.44287,168.28,0.99319,-0.058476,-0.10077,210.75,#29,0.70867,0.37799,-0.59574,367.4,0.54548,0.242,0.80243,98.97,0.44748,-0.89362,-0.034683,252.18,#30,-0.16277,-0.10384,0.98118,417.27,0.64654,0.73996,0.18557,124.24,-0.74531,0.66459,-0.053313,274.79,#31,-0.21503,-0.97071,-0.10715,729.16,0.66103,-0.063903,-0.74763,157.06,0.71889,-0.23159,0.65541,487.95,#32,-0.50044,0.1108,0.85865,421.16,-0.19814,0.9508,-0.23817,24.273,-0.84279,-0.28932,-0.45387,223.54,#33,0.023605,0.99631,-0.082554,390.78,-0.31959,0.085764,0.94367,73.496,0.94726,0.0041083,0.32044,219.93,#34,-0.70113,-0.19067,-0.68707,409.63,0.038256,0.95214,-0.30327,108.29,0.71201,-0.23892,-0.66028,203.21,#35,0.9827,-0.12958,0.13233,391.51,-0.18193,-0.54138,0.82086,74.013,-0.03472,-0.83073,-0.55559,218.81
    26679 
    26680 > view matrix models
    26681 > #24,-0.90809,0.28081,0.31067,465.49,-0.41493,-0.70354,-0.57694,468.88,0.056559,-0.65282,0.7554,202.27,#26,-0.99491,0.0089671,-0.10039,461.16,-0.0052843,-0.99931,-0.03689,91.492,-0.10066,-0.036172,0.99426,232.39,#27,-0.28319,0.85799,-0.42856,439.8,0.62049,-0.17682,-0.76402,117.14,-0.7313,-0.48228,-0.48229,256.93,#28,-0.11625,-0.43906,-0.8909,462.19,0.00785,0.89655,-0.44287,172.25,0.99319,-0.058476,-0.10077,213.29,#29,0.70867,0.37799,-0.59574,368.36,0.54548,0.242,0.80243,102.94,0.44748,-0.89362,-0.034683,254.72,#30,-0.16277,-0.10384,0.98118,418.23,0.64654,0.73996,0.18557,128.21,-0.74531,0.66459,-0.053313,277.33,#31,-0.21503,-0.97071,-0.10715,730.12,0.66103,-0.063903,-0.74763,161.02,0.71889,-0.23159,0.65541,490.49,#32,-0.50044,0.1108,0.85865,422.12,-0.19814,0.9508,-0.23817,28.241,-0.84279,-0.28932,-0.45387,226.08,#33,0.023605,0.99631,-0.082554,391.74,-0.31959,0.085764,0.94367,77.464,0.94726,0.0041083,0.32044,222.48,#34,-0.70113,-0.19067,-0.68707,410.59,0.038256,0.95214,-0.30327,112.26,0.71201,-0.23892,-0.66028,205.75,#35,0.9827,-0.12958,0.13233,392.47,-0.18193,-0.54138,0.82086,77.981,-0.03472,-0.83073,-0.55559,221.36
    26682 
    26683 > view matrix models
    26684 > #24,-0.90809,0.28081,0.31067,465.54,-0.41493,-0.70354,-0.57694,465.93,0.056559,-0.65282,0.7554,196.12,#26,-0.99491,0.0089671,-0.10039,461.21,-0.0052843,-0.99931,-0.03689,88.547,-0.10066,-0.036172,0.99426,226.23,#27,-0.28319,0.85799,-0.42856,439.86,0.62049,-0.17682,-0.76402,114.2,-0.7313,-0.48228,-0.48229,250.77,#28,-0.11625,-0.43906,-0.8909,462.24,0.00785,0.89655,-0.44287,169.31,0.99319,-0.058476,-0.10077,207.14,#29,0.70867,0.37799,-0.59574,368.41,0.54548,0.242,0.80243,99.993,0.44748,-0.89362,-0.034683,248.57,#30,-0.16277,-0.10384,0.98118,418.28,0.64654,0.73996,0.18557,125.26,-0.74531,0.66459,-0.053313,271.18,#31,-0.21503,-0.97071,-0.10715,730.17,0.66103,-0.063903,-0.74763,158.08,0.71889,-0.23159,0.65541,484.34,#32,-0.50044,0.1108,0.85865,422.17,-0.19814,0.9508,-0.23817,25.296,-0.84279,-0.28932,-0.45387,219.93,#33,0.023605,0.99631,-0.082554,391.79,-0.31959,0.085764,0.94367,74.519,0.94726,0.0041083,0.32044,216.32,#34,-0.70113,-0.19067,-0.68707,410.64,0.038256,0.95214,-0.30327,109.31,0.71201,-0.23892,-0.66028,199.6,#35,0.9827,-0.12958,0.13233,392.53,-0.18193,-0.54138,0.82086,75.036,-0.03472,-0.83073,-0.55559,215.2
    26685 
    26686 > view matrix models
    26687 > #24,-0.90809,0.28081,0.31067,468.62,-0.41493,-0.70354,-0.57694,473.95,0.056559,-0.65282,0.7554,197.39,#26,-0.99491,0.0089671,-0.10039,464.28,-0.0052843,-0.99931,-0.03689,96.565,-0.10066,-0.036172,0.99426,227.5,#27,-0.28319,0.85799,-0.42856,442.93,0.62049,-0.17682,-0.76402,122.22,-0.7313,-0.48228,-0.48229,252.05,#28,-0.11625,-0.43906,-0.8909,465.32,0.00785,0.89655,-0.44287,177.32,0.99319,-0.058476,-0.10077,208.41,#29,0.70867,0.37799,-0.59574,371.49,0.54548,0.242,0.80243,108.01,0.44748,-0.89362,-0.034683,249.84,#30,-0.16277,-0.10384,0.98118,421.36,0.64654,0.73996,0.18557,133.28,-0.74531,0.66459,-0.053313,272.45,#31,-0.21503,-0.97071,-0.10715,733.25,0.66103,-0.063903,-0.74763,166.1,0.71889,-0.23159,0.65541,485.61,#32,-0.50044,0.1108,0.85865,425.25,-0.19814,0.9508,-0.23817,33.314,-0.84279,-0.28932,-0.45387,221.2,#33,0.023605,0.99631,-0.082554,394.87,-0.31959,0.085764,0.94367,82.537,0.94726,0.0041083,0.32044,217.59,#34,-0.70113,-0.19067,-0.68707,413.72,0.038256,0.95214,-0.30327,117.33,0.71201,-0.23892,-0.66028,200.87,#35,0.9827,-0.12958,0.13233,395.6,-0.18193,-0.54138,0.82086,83.054,-0.03472,-0.83073,-0.55559,216.47
    26688 
    26689 > ui mousemode right "rotate selected models"
    26690 
    26691 > view matrix models
    26692 > #24,-0.98722,0.045709,0.15266,568.15,-0.15935,-0.27526,-0.94807,413.37,-0.0013149,-0.96028,0.27903,376.99,#26,-0.95639,-0.28169,-0.077257,455.69,0.27662,-0.7885,-0.54932,93.473,0.093823,-0.54674,0.83203,208.58,#27,-0.11305,0.75541,-0.64542,443.41,0.96382,-0.074447,-0.25595,105.63,-0.2414,-0.65101,-0.71966,246.24,#28,-0.079507,-0.16234,-0.98353,479.48,-0.50904,0.85492,-0.099964,168.81,0.85706,0.49271,-0.15061,234.01,#29,0.84915,0.40519,-0.33878,370.88,0.035006,0.59685,0.80159,111.6,0.527,-0.69253,0.49263,250.06,#30,0.009283,0.1345,0.99087,426.58,0.96513,0.25802,-0.044066,108.33,-0.2616,0.95673,-0.12742,272.95,#31,0.0068823,-0.95409,-0.29946,740.79,0.18998,0.29526,-0.93634,-52.318,0.98176,-0.050447,0.18329,411.7,#32,-0.56112,0.3726,0.73913,399.85,0.41355,0.89972,-0.13959,54.75,-0.71702,0.22734,-0.65894,177.81,#33,-0.041827,0.97816,0.20361,384.92,-0.77992,-0.15934,0.60526,103.33,0.62448,-0.13348,0.76955,205.67,#34,-0.63863,0.086043,-0.76469,412.53,-0.19828,0.94177,0.27156,136.24,0.74353,0.32505,-0.58438,206.16,#35,0.88652,-0.30527,0.3477,385.74,-0.35103,0.045824,0.93524,104.19,-0.30144,-0.95116,-0.066536,204.87
    26693 
    26694 > ui mousemode right "translate selected models"
    26695 
    26696 > view matrix models
    26697 > #24,-0.98722,0.045709,0.15266,561.42,-0.15935,-0.27526,-0.94807,411.47,-0.0013149,-0.96028,0.27903,386.23,#26,-0.95639,-0.28169,-0.077257,448.95,0.27662,-0.7885,-0.54932,91.576,0.093823,-0.54674,0.83203,217.83,#27,-0.11305,0.75541,-0.64542,436.68,0.96382,-0.074447,-0.25595,103.73,-0.2414,-0.65101,-0.71966,255.48,#28,-0.079507,-0.16234,-0.98353,472.75,-0.50904,0.85492,-0.099964,166.91,0.85706,0.49271,-0.15061,243.25,#29,0.84915,0.40519,-0.33878,364.14,0.035006,0.59685,0.80159,109.7,0.527,-0.69253,0.49263,259.3,#30,0.009283,0.1345,0.99087,419.84,0.96513,0.25802,-0.044066,106.43,-0.2616,0.95673,-0.12742,282.19,#31,0.0068823,-0.95409,-0.29946,734.06,0.18998,0.29526,-0.93634,-54.215,0.98176,-0.050447,0.18329,420.95,#32,-0.56112,0.3726,0.73913,393.12,0.41355,0.89972,-0.13959,52.853,-0.71702,0.22734,-0.65894,187.06,#33,-0.041827,0.97816,0.20361,378.19,-0.77992,-0.15934,0.60526,101.43,0.62448,-0.13348,0.76955,214.92,#34,-0.63863,0.086043,-0.76469,405.8,-0.19828,0.94177,0.27156,134.34,0.74353,0.32505,-0.58438,215.41,#35,0.88652,-0.30527,0.3477,379.01,-0.35103,0.045824,0.93524,102.29,-0.30144,-0.95116,-0.066536,214.12
    26698 
    26699 > view matrix models
    26700 > #24,-0.98722,0.045709,0.15266,448.95,-0.15935,-0.27526,-0.94807,688.08,-0.0013149,-0.96028,0.27903,263.14,#26,-0.95639,-0.28169,-0.077257,336.48,0.27662,-0.7885,-0.54932,368.18,0.093823,-0.54674,0.83203,94.736,#27,-0.11305,0.75541,-0.64542,324.21,0.96382,-0.074447,-0.25595,380.34,-0.2414,-0.65101,-0.71966,132.39,#28,-0.079507,-0.16234,-0.98353,360.28,-0.50904,0.85492,-0.099964,443.52,0.85706,0.49271,-0.15061,120.16,#29,0.84915,0.40519,-0.33878,251.67,0.035006,0.59685,0.80159,386.31,0.527,-0.69253,0.49263,136.21,#30,0.009283,0.1345,0.99087,307.37,0.96513,0.25802,-0.044066,383.04,-0.2616,0.95673,-0.12742,159.1,#31,0.0068823,-0.95409,-0.29946,621.59,0.18998,0.29526,-0.93634,222.39,0.98176,-0.050447,0.18329,297.85,#32,-0.56112,0.3726,0.73913,280.65,0.41355,0.89972,-0.13959,329.46,-0.71702,0.22734,-0.65894,63.965,#33,-0.041827,0.97816,0.20361,265.72,-0.77992,-0.15934,0.60526,378.04,0.62448,-0.13348,0.76955,91.826,#34,-0.63863,0.086043,-0.76469,293.33,-0.19828,0.94177,0.27156,410.95,0.74353,0.32505,-0.58438,92.318,#35,0.88652,-0.30527,0.3477,266.54,-0.35103,0.045824,0.93524,378.9,-0.30144,-0.95116,-0.066536,91.023
    26701 
    26702 > view matrix models
    26703 > #24,-0.98722,0.045709,0.15266,422.05,-0.15935,-0.27526,-0.94807,627.72,-0.0013149,-0.96028,0.27903,265.74,#26,-0.95639,-0.28169,-0.077257,309.58,0.27662,-0.7885,-0.54932,307.82,0.093823,-0.54674,0.83203,97.333,#27,-0.11305,0.75541,-0.64542,297.3,0.96382,-0.074447,-0.25595,319.98,-0.2414,-0.65101,-0.71966,134.99,#28,-0.079507,-0.16234,-0.98353,333.38,-0.50904,0.85492,-0.099964,383.15,0.85706,0.49271,-0.15061,122.76,#29,0.84915,0.40519,-0.33878,224.77,0.035006,0.59685,0.80159,325.95,0.527,-0.69253,0.49263,138.81,#30,0.009283,0.1345,0.99087,280.47,0.96513,0.25802,-0.044066,322.67,-0.2616,0.95673,-0.12742,161.7,#31,0.0068823,-0.95409,-0.29946,594.69,0.18998,0.29526,-0.93634,162.03,0.98176,-0.050447,0.18329,300.45,#32,-0.56112,0.3726,0.73913,253.74,0.41355,0.89972,-0.13959,269.1,-0.71702,0.22734,-0.65894,66.562,#33,-0.041827,0.97816,0.20361,238.81,-0.77992,-0.15934,0.60526,317.68,0.62448,-0.13348,0.76955,94.423,#34,-0.63863,0.086043,-0.76469,266.42,-0.19828,0.94177,0.27156,350.59,0.74353,0.32505,-0.58438,94.915,#35,0.88652,-0.30527,0.3477,239.63,-0.35103,0.045824,0.93524,318.54,-0.30144,-0.95116,-0.066536,93.62
    26704 
    26705 > ui mousemode right "rotate selected models"
    26706 
    26707 > view matrix models
    26708 > #24,-0.96236,0.08449,0.25831,385.32,-0.2609,-0.55342,-0.79099,671.07,0.076123,-0.82861,0.55463,161.04,#26,-0.98252,-0.18504,-0.020165,311.64,0.18361,-0.94569,-0.26825,304.21,0.030568,-0.26727,0.96314,103.31,#27,-0.22107,0.76401,-0.60615,297.76,0.82197,-0.18853,-0.53742,326.03,-0.52487,-0.61704,-0.58632,135.68,#28,-0.02722,-0.26325,-0.96434,326.43,-0.2227,0.94205,-0.25088,385.88,0.97451,0.20793,-0.084269,103.46,#29,0.83538,0.33938,-0.43239,224.99,0.29167,0.39308,0.87202,324.77,0.46591,-0.85458,0.22938,139.52,#30,-0.099538,0.09653,0.99034,280.52,0.83057,0.55614,0.029272,335.01,-0.54794,0.82546,-0.13553,160.7,#31,-0.022625,-0.98125,-0.1914,610.01,0.48548,0.15658,-0.86011,261.59,0.87396,-0.11238,0.47283,333.44,#32,-0.59928,0.26506,0.75538,260.86,0.1047,0.96144,-0.2543,251.87,-0.79366,-0.07331,-0.60393,87.653,#33,0.043119,0.99099,0.12678,240.24,-0.54651,-0.082832,0.83335,304.72,0.83634,-0.10522,0.53801,99.501,#34,-0.61742,-0.025179,-0.78623,263.88,-0.027069,0.99958,-0.010754,339.01,0.78617,0.014643,-0.61784,88.988,#35,0.92328,-0.30109,0.23854,240.96,-0.32622,-0.28667,0.90078,305.37,-0.20284,-0.90948,-0.3629,98.448
    26709 
    26710 > volume #24 level 0.003763
    26711 
    26712 > view matrix models
    26713 > #24,-0.42877,0.67009,-0.60592,345.79,-0.43491,-0.74097,-0.51168,683.83,-0.79184,0.04413,0.60913,153.01,#26,-0.29506,-0.019261,-0.95529,295.26,-0.040339,-0.99865,0.032595,309.65,-0.95463,0.048153,0.29388,181,#27,0.5969,0.7675,0.23377,265.82,0.55762,-0.18735,-0.80868,336.41,-0.57687,0.61306,-0.5398,169.45,#28,-0.95796,-0.06691,-0.27899,317.74,0.076679,0.87734,-0.47371,388.81,0.27646,-0.47518,-0.83533,170.22,#29,-0.10497,0.98231,-0.15505,239.24,0.59608,0.18695,0.78085,320.09,0.79603,-0.010458,-0.60516,103.58,#30,0.65811,-0.60998,0.44138,239.28,0.58594,0.78307,0.20852,348.32,-0.47282,0.1214,0.87276,156.88,#31,-0.70761,-0.16854,-0.68621,166.56,0.70521,-0.10761,-0.70078,405.21,0.044265,-0.9798,0.195,524.66,#32,0.56895,0.36243,0.7382,282.32,-0.27268,0.93001,-0.24644,245.04,-0.77585,-0.061084,0.62795,146.04,#33,-0.87964,0.38888,-0.27386,276.56,-0.2492,0.11361,0.96176,293.01,0.40512,0.91426,-0.0030221,114.02,#34,-0.92542,0.1988,0.3226,301.23,0.070259,0.92659,-0.36946,327.01,-0.37237,-0.31924,-0.87145,123.04,#35,0.40428,0.683,0.60834,277.91,-0.15647,-0.60366,0.78173,293.46,0.90115,-0.41123,-0.13718,114.24
    26714 
    26715 > view matrix models
    26716 > #24,-0.8369,0.39245,-0.38155,438.18,0.27643,-0.29862,-0.91346,533.65,-0.47243,-0.86995,0.14144,376.12,#26,-0.6898,-0.26294,-0.67457,307.18,0.66048,-0.61018,-0.43755,287,-0.29656,-0.74736,0.59456,120.49,#27,0.40063,0.87879,-0.25927,284.07,0.91201,-0.40963,0.020834,304.41,-0.087896,-0.2448,-0.96558,150.15,#28,-0.67282,-0.034265,-0.73901,342.77,-0.39938,0.85768,0.32384,345.78,0.62274,0.51303,-0.59075,167.02,#29,0.42676,0.88342,-0.19353,227.54,-0.31347,0.34522,0.88462,340.83,0.8483,-0.31686,0.42425,122.06,#30,0.50702,-0.25578,0.82311,259.01,0.86045,0.20616,-0.46596,314.86,-0.050508,0.9445,0.32462,166.47,#31,-0.39449,-0.6112,-0.68616,376.86,0.19979,0.6718,-0.71328,40.133,0.89692,-0.41847,-0.1429,399.76,#32,0.064856,0.53145,0.84461,263.14,0.59036,0.66195,-0.46185,274.81,-0.80453,0.52857,-0.27081,61.526,#33,-0.6359,0.77142,0.023203,256.78,-0.66768,-0.56497,0.48478,325.97,0.38708,0.29278,0.87433,88.002,#34,-0.9372,0.27541,-0.21405,290.98,0.1162,0.82512,0.55287,343.98,0.32888,0.49328,-0.8053,106.75,#35,0.7062,0.2365,0.66735,258.14,-0.70454,0.1415,0.69541,326.37,0.070036,-0.96127,0.26655,87.822
    26717 
    26718 > view matrix models
    26719 > #24,-0.82146,0.50944,0.25628,269.61,-0.3073,-0.016865,-0.95146,607.02,-0.48039,-0.86034,0.1704,369.41,#26,-0.94416,0.1807,-0.27551,322.25,0.090507,-0.66179,-0.7442,325.52,-0.31681,-0.72758,0.60849,121.76,#27,-0.24134,0.94976,-0.1993,292.78,0.96338,0.20975,-0.16705,325.83,-0.11686,-0.23232,-0.96559,150.87,#28,-0.29807,-0.56275,-0.77102,313.44,-0.71229,0.66884,-0.21281,394.93,0.63545,0.48576,-0.60021,166.39,#29,0.51323,0.49181,-0.70336,226.33,0.035911,0.80651,0.59014,319.17,0.8575,-0.32814,0.39626,121.68,#30,-0.12642,-0.34622,0.9296,266.27,0.98891,0.029635,0.14552,319.11,-0.07793,0.93769,0.33863,166.87,#31,-0.45094,-0.88675,-0.10165,523.42,-0.061702,0.14459,-0.98757,180.5,0.89042,-0.43906,-0.11992,408.64,#32,-0.29569,0.0036975,0.95528,296.08,0.48538,0.86187,0.14691,287.38,-0.82279,0.50711,-0.25664,63.238,#33,-0.099921,0.95011,-0.29548,259.17,-0.90735,0.034866,0.41894,324.52,0.40834,0.30997,0.85859,88.092,#34,-0.8175,-0.29789,-0.49291,274.78,-0.47504,0.83266,0.28464,360.19,0.32564,0.46684,-0.8222,106.24,#35,0.98841,0.11809,0.095423,260.01,-0.12094,0.23248,0.96505,325.67,0.091774,-0.9654,0.24407,87.898
    26720 
    26721 > view matrix models
    26722 > #24,-0.93632,0.19207,0.29395,350.03,-0.34833,-0.40246,-0.84658,670.96,-0.044296,-0.89506,0.44374,224.43,#26,-0.9953,-0.076393,-0.05958,315.41,0.094467,-0.90166,-0.422,313.55,-0.021483,-0.42564,0.90464,104.39,#27,-0.26189,0.81825,-0.51174,297.38,0.87528,-0.022002,-0.48312,328.6,-0.40657,-0.57444,-0.71043,138.52,#28,-0.071659,-0.36452,-0.92843,322.37,-0.37964,0.87073,-0.31257,395.05,0.92235,0.33007,-0.20078,118.47,#29,0.77077,0.35752,-0.52735,224.96,0.27998,0.55343,0.78443,320.72,0.5723,-0.75226,0.32647,136.16,#30,-0.14044,-0.012317,0.99001,277.72,0.89752,0.42059,0.13255,331.93,-0.41802,0.90717,-0.048015,163.15,#31,-0.12725,-0.98184,-0.14068,600.28,0.33339,0.091236,-0.93836,258.86,0.93416,-0.16631,0.31573,348.64,#32,-0.55164,0.17733,0.81501,270.98,0.18251,0.97912,-0.08951,260.44,-0.81387,0.09937,-0.57249,76.672,#33,0.038121,0.99921,0.010898,244.7,-0.66975,0.017455,0.74238,308.78,0.74161,-0.035599,0.66989,94.891,#34,-0.66367,-0.12047,-0.73826,265.65,-0.20538,0.97836,0.024977,346.15,0.71928,0.1682,-0.67405,91.819,#35,0.96154,-0.21067,0.17624,245.42,-0.21157,-0.15886,0.96437,309.65,-0.17517,-0.96456,-0.19733,94.016
    26723 
    26724 > view matrix models
    26725 > #24,-0.98931,0.016977,0.14485,429.9,-0.11261,-0.72008,-0.6847,650.38,0.09268,-0.69369,0.71429,94.648,#26,-0.94925,-0.3078,-0.064668,308.2,0.31144,-0.94857,-0.056799,292.23,-0.043859,-0.074057,0.99629,110.79,#27,-0.10406,0.73736,-0.66743,297.08,0.71612,-0.41014,-0.56477,321.92,-0.69018,-0.53673,-0.48536,137.46,#28,-0.065652,-0.13638,-0.98848,333.81,-0.0093562,0.99066,-0.13605,369.51,0.9978,0.00031621,-0.066314,94.713,#29,0.86271,0.39675,-0.31357,224.77,0.27179,0.15914,0.94911,330.9,0.42646,-0.90403,0.029464,138.8,#30,0.017727,0.16279,0.9865,280.97,0.70393,0.69865,-0.12794,338.06,-0.71005,0.6967,-0.10221,159.46,#31,0.034803,-0.95032,-0.30931,596.06,0.65566,0.25529,-0.71059,260.26,0.75426,-0.17807,0.63197,355.56,#32,-0.57263,0.39228,0.71987,251,0.013664,0.88253,-0.47005,244.78,-0.8197,-0.25933,-0.51072,104.36,#33,-0.038137,0.97184,0.23255,237.55,-0.36116,-0.23039,0.9036,301.16,0.93173,-0.049526,0.35977,104.34,#34,-0.62255,0.109,-0.77495,265.67,0.2174,0.97536,-0.037457,329.15,0.75178,-0.19179,-0.63091,87.887,#35,0.87297,-0.3286,0.36048,238.36,-0.47792,-0.42846,0.76682,301.48,-0.097522,-0.84169,-0.53108,103.2
    26726 
    26727 > ui mousemode right "translate selected models"
    26728 
    26729 > view matrix models
    26730 > #24,-0.98931,0.016977,0.14485,375.13,-0.11261,-0.72008,-0.6847,541.14,0.09268,-0.69369,0.71429,117.18,#26,-0.94925,-0.3078,-0.064668,253.43,0.31144,-0.94857,-0.056799,182.99,-0.043859,-0.074057,0.99629,133.32,#27,-0.10406,0.73736,-0.66743,242.31,0.71612,-0.41014,-0.56477,212.68,-0.69018,-0.53673,-0.48536,159.99,#28,-0.065652,-0.13638,-0.98848,279.04,-0.0093562,0.99066,-0.13605,260.27,0.9978,0.00031621,-0.066314,117.24,#29,0.86271,0.39675,-0.31357,170,0.27179,0.15914,0.94911,221.66,0.42646,-0.90403,0.029464,161.33,#30,0.017727,0.16279,0.9865,226.2,0.70393,0.69865,-0.12794,228.82,-0.71005,0.6967,-0.10221,181.99,#31,0.034803,-0.95032,-0.30931,541.29,0.65566,0.25529,-0.71059,151.02,0.75426,-0.17807,0.63197,378.09,#32,-0.57263,0.39228,0.71987,196.23,0.013664,0.88253,-0.47005,135.54,-0.8197,-0.25933,-0.51072,126.89,#33,-0.038137,0.97184,0.23255,182.78,-0.36116,-0.23039,0.9036,191.92,0.93173,-0.049526,0.35977,126.87,#34,-0.62255,0.109,-0.77495,210.9,0.2174,0.97536,-0.037457,219.91,0.75178,-0.19179,-0.63091,110.42,#35,0.87297,-0.3286,0.36048,183.59,-0.47792,-0.42846,0.76682,192.24,-0.097522,-0.84169,-0.53108,125.73
    26731 
    26732 > view matrix models
    26733 > #24,-0.98931,0.016977,0.14485,423.79,-0.11261,-0.72008,-0.6847,480.35,0.09268,-0.69369,0.71429,65.778,#26,-0.94925,-0.3078,-0.064668,302.09,0.31144,-0.94857,-0.056799,122.2,-0.043859,-0.074057,0.99629,81.923,#27,-0.10406,0.73736,-0.66743,290.96,0.71612,-0.41014,-0.56477,151.89,-0.69018,-0.53673,-0.48536,108.59,#28,-0.065652,-0.13638,-0.98848,327.7,-0.0093562,0.99066,-0.13605,199.48,0.9978,0.00031621,-0.066314,65.842,#29,0.86271,0.39675,-0.31357,218.65,0.27179,0.15914,0.94911,160.87,0.42646,-0.90403,0.029464,109.93,#30,0.017727,0.16279,0.9865,274.86,0.70393,0.69865,-0.12794,168.03,-0.71005,0.6967,-0.10221,130.59,#31,0.034803,-0.95032,-0.30931,589.95,0.65566,0.25529,-0.71059,90.231,0.75426,-0.17807,0.63197,326.69,#32,-0.57263,0.39228,0.71987,244.89,0.013664,0.88253,-0.47005,74.753,-0.8197,-0.25933,-0.51072,75.489,#33,-0.038137,0.97184,0.23255,231.43,-0.36116,-0.23039,0.9036,131.13,0.93173,-0.049526,0.35977,75.47,#34,-0.62255,0.109,-0.77495,259.56,0.2174,0.97536,-0.037457,159.12,0.75178,-0.19179,-0.63091,59.017,#35,0.87297,-0.3286,0.36048,232.24,-0.47792,-0.42846,0.76682,131.45,-0.097522,-0.84169,-0.53108,74.333
    26734 
    26735 > view matrix models
    26736 > #24,-0.98931,0.016977,0.14485,437.27,-0.11261,-0.72008,-0.6847,518.06,0.09268,-0.69369,0.71429,168.29,#26,-0.94925,-0.3078,-0.064668,315.57,0.31144,-0.94857,-0.056799,159.91,-0.043859,-0.074057,0.99629,184.43,#27,-0.10406,0.73736,-0.66743,304.44,0.71612,-0.41014,-0.56477,189.6,-0.69018,-0.53673,-0.48536,211.1,#28,-0.065652,-0.13638,-0.98848,341.17,-0.0093562,0.99066,-0.13605,237.19,0.9978,0.00031621,-0.066314,168.35,#29,0.86271,0.39675,-0.31357,232.13,0.27179,0.15914,0.94911,198.58,0.42646,-0.90403,0.029464,212.44,#30,0.017727,0.16279,0.9865,288.34,0.70393,0.69865,-0.12794,205.74,-0.71005,0.6967,-0.10221,233.1,#31,0.034803,-0.95032,-0.30931,603.43,0.65566,0.25529,-0.71059,127.94,0.75426,-0.17807,0.63197,429.2,#32,-0.57263,0.39228,0.71987,258.36,0.013664,0.88253,-0.47005,112.46,-0.8197,-0.25933,-0.51072,178,#33,-0.038137,0.97184,0.23255,244.91,-0.36116,-0.23039,0.9036,168.84,0.93173,-0.049526,0.35977,177.98,#34,-0.62255,0.109,-0.77495,273.03,0.2174,0.97536,-0.037457,196.83,0.75178,-0.19179,-0.63091,161.53,#35,0.87297,-0.3286,0.36048,245.72,-0.47792,-0.42846,0.76682,169.16,-0.097522,-0.84169,-0.53108,176.84
    26737 
    26738 > view matrix models
    26739 > #24,-0.98931,0.016977,0.14485,536.59,-0.11261,-0.72008,-0.6847,508.95,0.09268,-0.69369,0.71429,127.66,#26,-0.94925,-0.3078,-0.064668,414.89,0.31144,-0.94857,-0.056799,150.8,-0.043859,-0.074057,0.99629,143.81,#27,-0.10406,0.73736,-0.66743,403.76,0.71612,-0.41014,-0.56477,180.49,-0.69018,-0.53673,-0.48536,170.47,#28,-0.065652,-0.13638,-0.98848,440.49,-0.0093562,0.99066,-0.13605,228.09,0.9978,0.00031621,-0.066314,127.73,#29,0.86271,0.39675,-0.31357,331.45,0.27179,0.15914,0.94911,189.48,0.42646,-0.90403,0.029464,171.82,#30,0.017727,0.16279,0.9865,387.66,0.70393,0.69865,-0.12794,196.64,-0.71005,0.6967,-0.10221,192.48,#31,0.034803,-0.95032,-0.30931,702.75,0.65566,0.25529,-0.71059,118.84,0.75426,-0.17807,0.63197,388.58,#32,-0.57263,0.39228,0.71987,357.69,0.013664,0.88253,-0.47005,103.36,-0.8197,-0.25933,-0.51072,137.37,#33,-0.038137,0.97184,0.23255,344.23,-0.36116,-0.23039,0.9036,159.73,0.93173,-0.049526,0.35977,137.36,#34,-0.62255,0.109,-0.77495,372.35,0.2174,0.97536,-0.037457,187.73,0.75178,-0.19179,-0.63091,120.9,#35,0.87297,-0.3286,0.36048,345.04,-0.47792,-0.42846,0.76682,160.05,-0.097522,-0.84169,-0.53108,136.22
    26740 
    26741 > view matrix models
    26742 > #24,-0.98931,0.016977,0.14485,527.42,-0.11261,-0.72008,-0.6847,440.8,0.09268,-0.69369,0.71429,180.79,#26,-0.94925,-0.3078,-0.064668,405.72,0.31144,-0.94857,-0.056799,82.645,-0.043859,-0.074057,0.99629,196.94,#27,-0.10406,0.73736,-0.66743,394.59,0.71612,-0.41014,-0.56477,112.34,-0.69018,-0.53673,-0.48536,223.6,#28,-0.065652,-0.13638,-0.98848,431.33,-0.0093562,0.99066,-0.13605,159.93,0.9978,0.00031621,-0.066314,180.86,#29,0.86271,0.39675,-0.31357,322.28,0.27179,0.15914,0.94911,121.32,0.42646,-0.90403,0.029464,224.94,#30,0.017727,0.16279,0.9865,378.49,0.70393,0.69865,-0.12794,128.48,-0.71005,0.6967,-0.10221,245.6,#31,0.034803,-0.95032,-0.30931,693.58,0.65566,0.25529,-0.71059,50.679,0.75426,-0.17807,0.63197,441.7,#32,-0.57263,0.39228,0.71987,348.52,0.013664,0.88253,-0.47005,35.202,-0.8197,-0.25933,-0.51072,190.5,#33,-0.038137,0.97184,0.23255,335.06,-0.36116,-0.23039,0.9036,91.575,0.93173,-0.049526,0.35977,190.48,#34,-0.62255,0.109,-0.77495,363.19,0.2174,0.97536,-0.037457,119.57,0.75178,-0.19179,-0.63091,174.03,#35,0.87297,-0.3286,0.36048,335.87,-0.47792,-0.42846,0.76682,91.895,-0.097522,-0.84169,-0.53108,189.35
    26743 
    26744 > view matrix models
    26745 > #24,-0.98931,0.016977,0.14485,544.07,-0.11261,-0.72008,-0.6847,456.24,0.09268,-0.69369,0.71429,217.95,#26,-0.94925,-0.3078,-0.064668,422.37,0.31144,-0.94857,-0.056799,98.086,-0.043859,-0.074057,0.99629,234.09,#27,-0.10406,0.73736,-0.66743,411.24,0.71612,-0.41014,-0.56477,127.78,-0.69018,-0.53673,-0.48536,260.76,#28,-0.065652,-0.13638,-0.98848,447.98,-0.0093562,0.99066,-0.13605,175.37,0.9978,0.00031621,-0.066314,218.01,#29,0.86271,0.39675,-0.31357,338.93,0.27179,0.15914,0.94911,136.76,0.42646,-0.90403,0.029464,262.1,#30,0.017727,0.16279,0.9865,395.14,0.70393,0.69865,-0.12794,143.92,-0.71005,0.6967,-0.10221,282.76,#31,0.034803,-0.95032,-0.30931,710.23,0.65566,0.25529,-0.71059,66.12,0.75426,-0.17807,0.63197,478.86,#32,-0.57263,0.39228,0.71987,365.17,0.013664,0.88253,-0.47005,50.643,-0.8197,-0.25933,-0.51072,227.66,#33,-0.038137,0.97184,0.23255,351.71,-0.36116,-0.23039,0.9036,107.02,0.93173,-0.049526,0.35977,227.64,#34,-0.62255,0.109,-0.77495,379.84,0.2174,0.97536,-0.037457,135.01,0.75178,-0.19179,-0.63091,211.19,#35,0.87297,-0.3286,0.36048,352.52,-0.47792,-0.42846,0.76682,107.34,-0.097522,-0.84169,-0.53108,226.5
    26746 
    26747 > view matrix models
    26748 > #24,-0.98931,0.016977,0.14485,568.38,-0.11261,-0.72008,-0.6847,445.69,0.09268,-0.69369,0.71429,198.08,#26,-0.94925,-0.3078,-0.064668,446.68,0.31144,-0.94857,-0.056799,87.54,-0.043859,-0.074057,0.99629,214.22,#27,-0.10406,0.73736,-0.66743,435.56,0.71612,-0.41014,-0.56477,117.23,-0.69018,-0.53673,-0.48536,240.89,#28,-0.065652,-0.13638,-0.98848,472.29,-0.0093562,0.99066,-0.13605,164.83,0.9978,0.00031621,-0.066314,198.14,#29,0.86271,0.39675,-0.31357,363.25,0.27179,0.15914,0.94911,126.21,0.42646,-0.90403,0.029464,242.23,#30,0.017727,0.16279,0.9865,419.45,0.70393,0.69865,-0.12794,133.38,-0.71005,0.6967,-0.10221,262.89,#31,0.034803,-0.95032,-0.30931,734.54,0.65566,0.25529,-0.71059,55.574,0.75426,-0.17807,0.63197,458.99,#32,-0.57263,0.39228,0.71987,389.48,0.013664,0.88253,-0.47005,40.096,-0.8197,-0.25933,-0.51072,207.79,#33,-0.038137,0.97184,0.23255,376.03,-0.36116,-0.23039,0.9036,96.469,0.93173,-0.049526,0.35977,207.77,#34,-0.62255,0.109,-0.77495,404.15,0.2174,0.97536,-0.037457,124.47,0.75178,-0.19179,-0.63091,191.32,#35,0.87297,-0.3286,0.36048,376.84,-0.47792,-0.42846,0.76682,96.79,-0.097522,-0.84169,-0.53108,206.63
    26749 
    26750 > ui mousemode right "rotate selected models"
    26751 
    26752 > view matrix models
    26753 > #24,-0.97564,0.21001,-0.06349,572.38,-0.096474,-0.67055,-0.73556,443.5,-0.19705,-0.71151,0.67448,271.29,#26,-0.89787,-0.27651,-0.34258,450.3,0.335,-0.93401,-0.12413,87.914,-0.28565,-0.22622,0.93125,226.55,#27,0.095913,0.85775,-0.50503,432.18,0.76431,-0.3885,-0.51468,115.93,-0.63767,-0.33664,-0.69285,251.11,#28,-0.34385,-0.12886,-0.93014,479.56,-0.076894,0.99108,-0.10888,165.53,0.93587,0.034085,-0.35069,223.96,#29,0.70838,0.63548,-0.30718,362.44,0.22216,0.21235,0.95161,126.42,0.66996,-0.74234,0.009246,232.76,#30,0.21834,-0.038402,0.97512,410.57,0.7508,0.64493,-0.14272,130.87,-0.6234,0.76327,0.16965,268.82,#31,-0.17751,-0.86125,-0.47618,657.56,0.60095,0.28831,-0.74548,32.623,0.77933,-0.41849,0.46639,539.25,#32,-0.31874,0.45127,0.83352,397.12,0.083221,0.88932,-0.44966,42.328,-0.94418,-0.073957,-0.32102,200.89,#33,-0.2996,0.946,0.12379,384.34,-0.42381,-0.24821,0.87108,98.855,0.85477,0.20851,0.47529,201.2,#34,-0.80851,0.16063,-0.56613,416.01,0.1788,0.9836,0.023723,127.28,0.56066,-0.082046,-0.82397,195.38,#35,0.86412,-0.079317,0.497,385.43,-0.48954,-0.3617,0.79343,99.235,0.11683,-0.92892,-0.35138,200.36
    26754 
    26755 > view matrix models
    26756 > #24,-0.98154,0.19029,0.019121,559.31,-0.13926,-0.64266,-0.75339,450.74,-0.13107,-0.74215,0.65729,267.51,#26,-0.93061,-0.24768,-0.26947,451.2,0.29744,-0.94081,-0.16248,90.772,-0.21328,-0.23135,0.9492,221.87,#27,0.014445,0.84902,-0.52817,433.58,0.78282,-0.33823,-0.5223,117.29,-0.62208,-0.40591,-0.66951,248.38,#28,-0.27262,-0.17253,-0.94653,476.53,-0.11548,0.98255,-0.14583,169.76,0.95516,0.069549,-0.28779,219.33,#29,0.74289,0.57056,-0.35011,362.29,0.24065,0.26041,0.93502,124.8,0.62466,-0.77887,0.056152,235.22,#30,0.13808,-0.014425,0.99032,412.6,0.77495,0.62422,-0.098957,130.74,-0.61675,0.78111,0.097369,267.95,#31,-0.14982,-0.90135,-0.40636,682.49,0.57315,0.25572,-0.77853,38.333,0.80564,-0.34955,0.47829,517.77,#32,-0.38845,0.40262,0.82885,398.54,0.089699,0.91174,-0.40085,43.262,-0.91709,-0.081363,-0.39028,198.77,#33,-0.21799,0.96902,0.11614,383.17,-0.45783,-0.20663,0.8647,99.077,0.8619,0.13532,0.48869,201.48,#34,-0.77422,0.10803,-0.62363,412.98,0.12599,0.99191,0.015412,129.14,0.62025,-0.06664,-0.78157,194.23,#35,0.89226,-0.12792,0.43301,384.19,-0.44945,-0.34325,0.82473,99.53,0.043137,-0.93049,-0.36377,200.58
    26757 
    26758 > view matrix models
    26759 > #24,-0.97911,0.19244,0.065625,548.05,-0.17488,-0.63246,-0.75459,456.39,-0.1037,-0.75031,0.65291,264.41,#26,-0.94664,-0.21946,-0.23601,451.98,0.26371,-0.94845,-0.1758,92.856,-0.18526,-0.22865,0.95572,220.16,#27,-0.032168,0.8489,-0.52758,434.16,0.7851,-0.3052,-0.53895,118.61,-0.61853,-0.43154,-0.65665,247.29,#28,-0.24071,-0.20646,-0.94838,474.31,-0.12897,0.97525,-0.17957,172.74,0.96199,0.079089,-0.26139,217.28,#29,0.75113,0.53805,-0.38249,362.3,0.26558,0.28414,0.92127,123.53,0.60437,-0.79357,0.070534,236.2,#30,0.091772,-0.014971,0.99567,413.27,0.78178,0.62039,-0.06273,131.2,-0.61676,0.78415,0.068638,267.51,#31,-0.14764,-0.91978,-0.3636,693.42,0.56426,0.2236,-0.79474,47.892,0.81229,-0.3225,0.48599,509.1,#32,-0.41761,0.36634,0.8315,400.46,0.078691,0.92626,-0.36857,43.522,-0.90521,-0.088486,-0.41564,198.35,#33,-0.17622,0.97944,0.098234,383.13,-0.46873,-0.17125,0.86658,98.721,0.86559,0.10667,0.48927,201.76,#34,-0.76024,0.069547,-0.64591,411.6,0.095072,0.99546,-0.0047163,129.89,0.64265,-0.064994,-0.7634,193.81,#35,0.90905,-0.14182,0.39181,384.1,-0.4164,-0.34431,0.84147,99.214,0.015563,-0.92808,-0.37205,200.84
    26760 
    26761 > ui mousemode right "translate selected models"
    26762 
    26763 > view matrix models
    26764 > #24,-0.97911,0.19244,0.065625,555.1,-0.17488,-0.63246,-0.75459,467.12,-0.1037,-0.75031,0.65291,270.09,#26,-0.94664,-0.21946,-0.23601,459.03,0.26371,-0.94845,-0.1758,103.59,-0.18526,-0.22865,0.95572,225.84,#27,-0.032168,0.8489,-0.52758,441.21,0.7851,-0.3052,-0.53895,129.34,-0.61853,-0.43154,-0.65665,252.96,#28,-0.24071,-0.20646,-0.94838,481.35,-0.12897,0.97525,-0.17957,183.47,0.96199,0.079089,-0.26139,222.96,#29,0.75113,0.53805,-0.38249,369.34,0.26558,0.28414,0.92127,134.26,0.60437,-0.79357,0.070534,241.88,#30,0.091772,-0.014971,0.99567,420.32,0.78178,0.62039,-0.06273,141.94,-0.61676,0.78415,0.068638,273.19,#31,-0.14764,-0.91978,-0.3636,700.47,0.56426,0.2236,-0.79474,58.624,0.81229,-0.3225,0.48599,514.77,#32,-0.41761,0.36634,0.8315,407.51,0.078691,0.92626,-0.36857,54.254,-0.90521,-0.088486,-0.41564,204.03,#33,-0.17622,0.97944,0.098234,390.18,-0.46873,-0.17125,0.86658,109.45,0.86559,0.10667,0.48927,207.44,#34,-0.76024,0.069547,-0.64591,418.65,0.095072,0.99546,-0.0047163,140.63,0.64265,-0.064994,-0.7634,199.49,#35,0.90905,-0.14182,0.39181,391.15,-0.4164,-0.34431,0.84147,109.95,0.015563,-0.92808,-0.37205,206.51
    26765 
    26766 > view matrix models
    26767 > #24,-0.97911,0.19244,0.065625,534.22,-0.17488,-0.63246,-0.75459,468.5,-0.1037,-0.75031,0.65291,261.02,#26,-0.94664,-0.21946,-0.23601,438.15,0.26371,-0.94845,-0.1758,104.97,-0.18526,-0.22865,0.95572,216.78,#27,-0.032168,0.8489,-0.52758,420.33,0.7851,-0.3052,-0.53895,130.72,-0.61853,-0.43154,-0.65665,243.9,#28,-0.24071,-0.20646,-0.94838,460.48,-0.12897,0.97525,-0.17957,184.85,0.96199,0.079089,-0.26139,213.9,#29,0.75113,0.53805,-0.38249,348.47,0.26558,0.28414,0.92127,135.64,0.60437,-0.79357,0.070534,232.82,#30,0.091772,-0.014971,0.99567,399.44,0.78178,0.62039,-0.06273,143.31,-0.61676,0.78415,0.068638,264.13,#31,-0.14764,-0.91978,-0.3636,679.59,0.56426,0.2236,-0.79474,60.002,0.81229,-0.3225,0.48599,505.71,#32,-0.41761,0.36634,0.8315,386.63,0.078691,0.92626,-0.36857,55.632,-0.90521,-0.088486,-0.41564,194.97,#33,-0.17622,0.97944,0.098234,369.3,-0.46873,-0.17125,0.86658,110.83,0.86559,0.10667,0.48927,198.38,#34,-0.76024,0.069547,-0.64591,397.77,0.095072,0.99546,-0.0047163,142,0.64265,-0.064994,-0.7634,190.43,#35,0.90905,-0.14182,0.39181,370.28,-0.4164,-0.34431,0.84147,111.32,0.015563,-0.92808,-0.37205,197.45
    26768 
    26769 > view matrix models
    26770 > #24,-0.97911,0.19244,0.065625,532.75,-0.17488,-0.63246,-0.75459,471.05,-0.1037,-0.75031,0.65291,262.31,#26,-0.94664,-0.21946,-0.23601,436.68,0.26371,-0.94845,-0.1758,107.52,-0.18526,-0.22865,0.95572,218.07,#27,-0.032168,0.8489,-0.52758,418.86,0.7851,-0.3052,-0.53895,133.27,-0.61853,-0.43154,-0.65665,245.19,#28,-0.24071,-0.20646,-0.94838,459.01,-0.12897,0.97525,-0.17957,187.4,0.96199,0.079089,-0.26139,215.19,#29,0.75113,0.53805,-0.38249,347,0.26558,0.28414,0.92127,138.19,0.60437,-0.79357,0.070534,234.11,#30,0.091772,-0.014971,0.99567,397.97,0.78178,0.62039,-0.06273,145.87,-0.61676,0.78415,0.068638,265.41,#31,-0.14764,-0.91978,-0.3636,678.13,0.56426,0.2236,-0.79474,62.557,0.81229,-0.3225,0.48599,507,#32,-0.41761,0.36634,0.8315,385.16,0.078691,0.92626,-0.36857,58.186,-0.90521,-0.088486,-0.41564,196.25,#33,-0.17622,0.97944,0.098234,367.83,-0.46873,-0.17125,0.86658,113.39,0.86559,0.10667,0.48927,199.67,#34,-0.76024,0.069547,-0.64591,396.3,0.095072,0.99546,-0.0047163,144.56,0.64265,-0.064994,-0.7634,191.71,#35,0.90905,-0.14182,0.39181,368.81,-0.4164,-0.34431,0.84147,113.88,0.015563,-0.92808,-0.37205,198.74
    26771 
    26772 > ui mousemode right "rotate selected models"
    26773 
    26774 > view matrix models
    26775 > #24,-0.97974,0.1466,-0.13649,587.06,-0.031522,-0.78578,-0.61771,441.89,-0.1978,-0.60089,0.77447,224.61,#26,-0.86036,-0.36471,-0.35605,431.35,0.37262,-0.9267,0.048836,96.839,-0.34776,-0.090653,0.93319,230.73,#27,0.17141,0.81731,-0.5501,415.94,0.6484,-0.51398,-0.56161,129.79,-0.74175,-0.26042,-0.61805,250.56,#28,-0.35276,-0.032618,-0.93514,467.98,0.096137,0.99284,-0.070896,170.07,0.93076,-0.11491,-0.3471,217.23,#29,0.72431,0.65548,-0.21384,347.6,0.25095,0.038246,0.96725,144.02,0.64219,-0.75425,-0.13679,229.63,#30,0.29192,0.021565,0.9562,395.81,0.62557,0.75194,-0.20794,149.19,-0.72349,0.65888,0.20601,265.48,#31,-0.12119,-0.82798,-0.54751,631.27,0.72426,0.30343,-0.61918,69.206,0.67879,-0.47158,0.5629,551.77,#32,-0.30609,0.53532,0.78723,374.1,-0.028165,0.82147,-0.56956,53.209,-0.95159,-0.19651,-0.23636,211.15,#33,-0.34196,0.9169,0.2058,366.83,-0.2616,-0.30323,0.91631,110.11,0.90257,0.2595,0.34355,202.88,#34,-0.7893,0.25518,-0.55846,401.13,0.3362,0.9407,-0.045343,134.22,0.51377,-0.22355,-0.82829,193.49,#35,0.81239,-0.11082,0.57249,367.97,-0.54662,-0.48659,0.68149,110.26,0.20304,-0.86657,-0.45588,202.02
    26776 
    26777 > ui mousemode right "translate selected models"
    26778 
    26779 > view matrix models
    26780 > #24,-0.97974,0.1466,-0.13649,598.55,-0.031522,-0.78578,-0.61771,434.37,-0.1978,-0.60089,0.77447,224.04,#26,-0.86036,-0.36471,-0.35605,442.83,0.37262,-0.9267,0.048836,89.316,-0.34776,-0.090653,0.93319,230.15,#27,0.17141,0.81731,-0.5501,427.43,0.6484,-0.51398,-0.56161,122.27,-0.74175,-0.26042,-0.61805,249.98,#28,-0.35276,-0.032618,-0.93514,479.47,0.096137,0.99284,-0.070896,162.55,0.93076,-0.11491,-0.3471,216.65,#29,0.72431,0.65548,-0.21384,359.08,0.25095,0.038246,0.96725,136.5,0.64219,-0.75425,-0.13679,229.06,#30,0.29192,0.021565,0.9562,407.3,0.62557,0.75194,-0.20794,141.66,-0.72349,0.65888,0.20601,264.91,#31,-0.12119,-0.82798,-0.54751,642.75,0.72426,0.30343,-0.61918,61.683,0.67879,-0.47158,0.5629,551.19,#32,-0.30609,0.53532,0.78723,385.59,-0.028165,0.82147,-0.56956,45.685,-0.95159,-0.19651,-0.23636,210.58,#33,-0.34196,0.9169,0.2058,378.32,-0.2616,-0.30323,0.91631,102.59,0.90257,0.2595,0.34355,202.31,#34,-0.7893,0.25518,-0.55846,412.62,0.3362,0.9407,-0.045343,126.69,0.51377,-0.22355,-0.82829,192.91,#35,0.81239,-0.11082,0.57249,379.45,-0.54662,-0.48659,0.68149,102.73,0.20304,-0.86657,-0.45588,201.44
    26781 
    26782 > view matrix models
    26783 > #24,-0.97974,0.1466,-0.13649,602.11,-0.031522,-0.78578,-0.61771,441.2,-0.1978,-0.60089,0.77447,223.29,#26,-0.86036,-0.36471,-0.35605,446.4,0.37262,-0.9267,0.048836,96.149,-0.34776,-0.090653,0.93319,229.4,#27,0.17141,0.81731,-0.5501,430.99,0.6484,-0.51398,-0.56161,129.1,-0.74175,-0.26042,-0.61805,249.23,#28,-0.35276,-0.032618,-0.93514,483.03,0.096137,0.99284,-0.070896,169.38,0.93076,-0.11491,-0.3471,215.9,#29,0.72431,0.65548,-0.21384,362.65,0.25095,0.038246,0.96725,143.33,0.64219,-0.75425,-0.13679,228.31,#30,0.29192,0.021565,0.9562,410.87,0.62557,0.75194,-0.20794,148.49,-0.72349,0.65888,0.20601,264.16,#31,-0.12119,-0.82798,-0.54751,646.32,0.72426,0.30343,-0.61918,68.516,0.67879,-0.47158,0.5629,550.44,#32,-0.30609,0.53532,0.78723,389.15,-0.028165,0.82147,-0.56956,52.518,-0.95159,-0.19651,-0.23636,209.83,#33,-0.34196,0.9169,0.2058,381.89,-0.2616,-0.30323,0.91631,109.42,0.90257,0.2595,0.34355,201.56,#34,-0.7893,0.25518,-0.55846,416.18,0.3362,0.9407,-0.045343,133.52,0.51377,-0.22355,-0.82829,192.16,#35,0.81239,-0.11082,0.57249,383.02,-0.54662,-0.48659,0.68149,109.56,0.20304,-0.86657,-0.45588,200.69
    26784 
    26785 > ui mousemode right "rotate selected models"
    26786 
    26787 > view matrix models
    26788 > #24,-0.92771,0.27918,-0.24781,588.87,0.12527,-0.39253,-0.91117,393.26,-0.35165,-0.87635,0.32918,410.47,#26,-0.79884,-0.30844,-0.51644,447.41,0.54328,-0.73852,-0.39929,99.671,-0.25825,-0.59954,0.75753,217.76,#27,0.27526,0.86888,-0.41142,427.54,0.91965,-0.36269,-0.15066,119.3,-0.28012,-0.3369,-0.89891,248.36,#28,-0.51454,-0.048629,-0.85609,483.11,-0.35724,0.91977,0.16247,167.82,0.77951,0.38943,-0.49063,248.89,#29,0.59004,0.77623,-0.22208,363.47,-0.14046,0.36957,0.91853,145.81,0.79506,-0.51077,0.32709,225.92,#30,0.39143,-0.12273,0.91199,404.4,0.88409,0.3251,-0.3357,129.87,-0.25529,0.93768,0.23575,267.24,#31,-0.26563,-0.74261,-0.61479,588.53,0.29922,0.5427,-0.78482,-94.256,0.91646,-0.39243,0.078041,511.49,#32,-0.1324,0.53076,0.83712,396.16,0.46333,0.77974,-0.4211,74.712,-0.87624,0.33211,-0.34915,169.65,#33,-0.48569,0.86744,0.10796,388.37,-0.65417,-0.44261,0.61331,128.56,0.57979,0.22725,0.78243,189.61,#34,-0.87938,0.25553,-0.40174,422.86,0.081619,0.91219,0.40156,152.2,0.46907,0.32034,-0.82302,199.45,#35,0.7836,0.061687,0.6182,389.63,-0.61995,0.012767,0.78454,129.05,0.040504,-0.99801,0.048247,189.14
    26789 
    26790 > view matrix models
    26791 > #24,-0.92217,0.27128,-0.27571,595.51,0.14647,-0.41479,-0.89805,390.44,-0.35798,-0.86854,0.34277,407.19,#26,-0.78154,-0.32736,-0.53107,446.34,0.56203,-0.73894,-0.37161,97.984,-0.27078,-0.5889,0.76149,218.61,#27,0.30319,0.85933,-0.41186,426.93,0.90653,-0.39332,-0.1533,118.69,-0.29373,-0.32689,-0.89826,248.79,#28,-0.52803,-0.023377,-0.8489,483.89,-0.32928,0.92705,0.17929,165.56,0.78279,0.3742,-0.49721,248.8,#29,0.58233,0.78884,-0.19653,363.75,-0.14456,0.33838,0.92984,146.68,0.79999,-0.51307,0.31108,225.63,#30,0.41816,-0.11712,0.90079,404.02,0.86801,0.34385,-0.35823,130.23,-0.26778,0.93169,0.24545,267.4,#31,-0.26063,-0.72478,-0.63778,580.5,0.3218,0.55761,-0.76519,-95.137,0.91023,-0.40467,0.0879,516.11,#32,-0.11512,0.55191,0.82592,394.59,0.45258,0.76928,-0.45098,73.745,-0.88426,0.32188,-0.33834,170.67,#33,-0.50703,0.85317,0.12254,388.29,-0.63016,-0.46392,0.62263,128.12,0.58806,0.23847,0.77286,189.72,#34,-0.87859,0.28072,-0.38637,423.42,0.11488,0.90948,0.39957,150.9,0.46356,0.30667,-0.8313,199.33,#35,0.76498,0.066234,0.64064,389.56,-0.64177,-0.0053799,0.76688,128.56,0.05424,-0.99779,0.038391,189.25
    26792 
    26793 > ui mousemode right "translate selected models"
    26794 
    26795 > view matrix models
    26796 > #24,-0.92217,0.27128,-0.27571,587.68,0.14647,-0.41479,-0.89805,391.66,-0.35798,-0.86854,0.34277,412.03,#26,-0.78154,-0.32736,-0.53107,438.51,0.56203,-0.73894,-0.37161,99.205,-0.27078,-0.5889,0.76149,223.46,#27,0.30319,0.85933,-0.41186,419.1,0.90653,-0.39332,-0.1533,119.91,-0.29373,-0.32689,-0.89826,253.64,#28,-0.52803,-0.023377,-0.8489,476.06,-0.32928,0.92705,0.17929,166.78,0.78279,0.3742,-0.49721,253.64,#29,0.58233,0.78884,-0.19653,355.93,-0.14456,0.33838,0.92984,147.9,0.79999,-0.51307,0.31108,230.47,#30,0.41816,-0.11712,0.90079,396.19,0.86801,0.34385,-0.35823,131.45,-0.26778,0.93169,0.24545,272.24,#31,-0.26063,-0.72478,-0.63778,572.67,0.3218,0.55761,-0.76519,-93.916,0.91023,-0.40467,0.0879,520.95,#32,-0.11512,0.55191,0.82592,386.76,0.45258,0.76928,-0.45098,74.966,-0.88426,0.32188,-0.33834,175.52,#33,-0.50703,0.85317,0.12254,380.46,-0.63016,-0.46392,0.62263,129.34,0.58806,0.23847,0.77286,194.56,#34,-0.87859,0.28072,-0.38637,415.59,0.11488,0.90948,0.39957,152.12,0.46356,0.30667,-0.8313,204.18,#35,0.76498,0.066234,0.64064,381.73,-0.64177,-0.0053799,0.76688,129.78,0.05424,-0.99779,0.038391,194.09
    26797 
    26798 > ui mousemode right "rotate selected models"
    26799 
    26800 > view matrix models
    26801 > #24,-0.95958,0.23013,-0.16201,578.69,0.059806,-0.39576,-0.9164,410.02,-0.27501,-0.88905,0.366,393.67,#26,-0.85001,-0.30973,-0.4261,440.58,0.48705,-0.77025,-0.41171,103.77,-0.20068,-0.55749,0.80557,219.09,#27,0.19283,0.85925,-0.47382,422.1,0.92773,-0.31692,-0.19717,122.89,-0.31958,-0.40156,-0.85827,250.86,#28,-0.42503,-0.07414,-0.90214,474.36,-0.36911,0.92421,0.09795,174.71,0.8265,0.37462,-0.42019,245.82,#29,0.66123,0.70669,-0.25172,354.86,-0.084911,0.40389,0.91086,144.88,0.74536,-0.58091,0.32707,233.37,#30,0.31265,-0.06523,0.94763,399.97,0.89994,0.33952,-0.27355,132.47,-0.30389,0.93833,0.16485,271.42,#31,-0.20749,-0.8051,-0.55566,617.35,0.30445,0.48667,-0.81882,-74.021,0.92966,-0.33907,0.14413,503.58,#32,-0.23306,0.50621,0.83032,387.21,0.4331,0.81851,-0.37745,74.575,-0.8707,0.27164,-0.41,175.92,#33,-0.39412,0.90934,0.13328,377.71,-0.66846,-0.38315,0.63746,128.31,0.63074,0.16214,0.75887,195.44,#34,-0.84111,0.22317,-0.49268,411.35,0.039009,0.93356,0.35628,154.24,0.53945,0.28045,-0.79394,201.9,#35,0.82172,-0.021711,0.56948,378.9,-0.56973,-0.0075706,0.8218,128.87,-0.013531,-0.99974,-0.01859,194.86
    26802 
    26803 > view matrix models
    26804 > #24,-0.95978,0.23023,-0.16071,578.43,0.057941,-0.39767,-0.9157,410.65,-0.27473,-0.88818,0.36833,392.92,#26,-0.8507,-0.30902,-0.42523,440.61,0.4855,-0.772,-0.41025,103.8,-0.2015,-0.55545,0.80677,219.15,#27,0.19154,0.85946,-0.47396,422.13,0.92718,-0.31685,-0.19987,122.97,-0.32196,-0.40116,-0.85756,250.89,#28,-0.42421,-0.075115,-0.90245,474.32,-0.3676,0.92504,0.095798,174.84,0.8276,0.37237,-0.42002,245.69,#29,0.66167,0.70593,-0.2527,354.85,-0.082254,0.40333,0.91135,144.84,0.74527,-0.58223,0.32494,233.37,#30,0.3114,-0.065229,0.94804,400,0.89958,0.34175,-0.27197,132.57,-0.30625,0.93752,0.1651,271.43,#31,-0.20745,-0.80586,-0.55458,617.73,0.30648,0.48484,-0.81915,-73.077,0.929,-0.3399,0.1464,504,#32,-0.23399,0.50532,0.8306,387.27,0.43066,0.81981,-0.37743,74.426,-0.87166,0.26939,-0.40944,176.08,#33,-0.39301,0.90989,0.13284,377.71,-0.66739,-0.38163,0.6395,128.2,0.63256,0.16268,0.75723,195.47,#34,-0.84092,0.22214,-0.49347,411.31,0.0393,0.93453,0.35371,154.19,0.53974,0.27805,-0.79459,201.85,#35,0.82242,-0.02215,0.56845,378.89,-0.56875,-0.010064,0.82245,128.75,-0.012497,-0.9997,-0.020875,194.88
    26805 
    26806 > ui mousemode right "translate selected models"
    26807 
    26808 > view matrix models
    26809 > #24,-0.95978,0.23023,-0.16071,579.09,0.057941,-0.39767,-0.9157,408.67,-0.27473,-0.88818,0.36833,388.94,#26,-0.8507,-0.30902,-0.42523,441.28,0.4855,-0.772,-0.41025,101.82,-0.2015,-0.55545,0.80677,215.18,#27,0.19154,0.85946,-0.47396,422.8,0.92718,-0.31685,-0.19987,120.99,-0.32196,-0.40116,-0.85756,246.91,#28,-0.42421,-0.075115,-0.90245,474.99,-0.3676,0.92504,0.095798,172.86,0.8276,0.37237,-0.42002,241.72,#29,0.66167,0.70593,-0.2527,355.52,-0.082254,0.40333,0.91135,142.86,0.74527,-0.58223,0.32494,229.39,#30,0.3114,-0.065229,0.94804,400.66,0.89958,0.34175,-0.27197,130.6,-0.30625,0.93752,0.1651,267.45,#31,-0.20745,-0.80586,-0.55458,618.4,0.30648,0.48484,-0.81915,-75.051,0.929,-0.3399,0.1464,500.03,#32,-0.23399,0.50532,0.8306,387.93,0.43066,0.81981,-0.37743,72.453,-0.87166,0.26939,-0.40944,172.1,#33,-0.39301,0.90989,0.13284,378.38,-0.66739,-0.38163,0.6395,126.23,0.63256,0.16268,0.75723,191.49,#34,-0.84092,0.22214,-0.49347,411.98,0.0393,0.93453,0.35371,152.21,0.53974,0.27805,-0.79459,197.88,#35,0.82242,-0.02215,0.56845,379.56,-0.56875,-0.010064,0.82245,126.78,-0.012497,-0.9997,-0.020875,190.91
    26810 
    26811 > view matrix models
    26812 > #24,-0.95978,0.23023,-0.16071,578.33,0.057941,-0.39767,-0.9157,406.48,-0.27473,-0.88818,0.36833,390.5,#26,-0.8507,-0.30902,-0.42523,440.52,0.4855,-0.772,-0.41025,99.631,-0.2015,-0.55545,0.80677,216.74,#27,0.19154,0.85946,-0.47396,422.04,0.92718,-0.31685,-0.19987,118.8,-0.32196,-0.40116,-0.85756,248.47,#28,-0.42421,-0.075115,-0.90245,474.23,-0.3676,0.92504,0.095798,170.67,0.8276,0.37237,-0.42002,243.28,#29,0.66167,0.70593,-0.2527,354.76,-0.082254,0.40333,0.91135,140.67,0.74527,-0.58223,0.32494,230.96,#30,0.3114,-0.065229,0.94804,399.91,0.89958,0.34175,-0.27197,128.41,-0.30625,0.93752,0.1651,269.02,#31,-0.20745,-0.80586,-0.55458,617.64,0.30648,0.48484,-0.81915,-77.243,0.929,-0.3399,0.1464,501.59,#32,-0.23399,0.50532,0.8306,387.17,0.43066,0.81981,-0.37743,70.26,-0.87166,0.26939,-0.40944,173.66,#33,-0.39301,0.90989,0.13284,377.62,-0.66739,-0.38163,0.6395,124.03,0.63256,0.16268,0.75723,193.06,#34,-0.84092,0.22214,-0.49347,411.22,0.0393,0.93453,0.35371,150.02,0.53974,0.27805,-0.79459,199.44,#35,0.82242,-0.02215,0.56845,378.8,-0.56875,-0.010064,0.82245,124.59,-0.012497,-0.9997,-0.020875,192.47
    26813 
    26814 > fitmap #24 inMap #25
    26815 
    26816 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    26817 points 
    26818 correlation = 0.7376, correlation about mean = 0.2518, overlap = 17.37 
    26819 steps = 104, shift = 6.57, angle = 11 degrees 
    26820  
    26821 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    26822 (#25) coordinates: 
    26823 Matrix rotation and translation 
    26824 -0.53717394 -0.84339058 -0.01168334 402.36094944 
    26825 0.84310057 -0.53729695 0.02221345 56.76569545 
    26826 -0.02501204 0.00208226 0.99968499 -108.79516868 
    26827 Axis -0.01193551 0.00790240 0.99989754 
    26828 Axis point 184.71498739 138.81057099 0.00000000 
    26829 Rotation angle (degrees) 122.50634127 
    26830 Shift along axis -113.13782048 
    26831  
    26832 
    26833 > fitmap #24 inMap #25
    26834 
    26835 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    26836 points 
    26837 correlation = 0.7376, correlation about mean = 0.2518, overlap = 17.37 
    26838 steps = 104, shift = 6.57, angle = 11 degrees 
    26839  
    26840 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    26841 (#25) coordinates: 
    26842 Matrix rotation and translation 
    26843 -0.53717394 -0.84339058 -0.01168334 402.36094944 
    26844 0.84310057 -0.53729695 0.02221345 56.76569545 
    26845 -0.02501204 0.00208226 0.99968499 -108.79516868 
    26846 Axis -0.01193551 0.00790240 0.99989754 
    26847 Axis point 184.71498739 138.81057099 0.00000000 
    26848 Rotation angle (degrees) 122.50634127 
    26849 Shift along axis -113.13782048 
    26850  
    26851 
    26852 > fitmap #24 inMap #25
    26853 
    26854 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    26855 points 
    26856 correlation = 0.7376, correlation about mean = 0.2518, overlap = 17.37 
    26857 steps = 104, shift = 6.57, angle = 11 degrees 
    26858  
    26859 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    26860 (#25) coordinates: 
    26861 Matrix rotation and translation 
    26862 -0.53717394 -0.84339058 -0.01168334 402.36094944 
    26863 0.84310057 -0.53729695 0.02221345 56.76569545 
    26864 -0.02501204 0.00208226 0.99968499 -108.79516868 
    26865 Axis -0.01193551 0.00790240 0.99989754 
    26866 Axis point 184.71498739 138.81057099 0.00000000 
    26867 Rotation angle (degrees) 122.50634127 
    26868 Shift along axis -113.13782048 
    26869  
    26870 
    26871 > ui mousemode right "rotate selected models"
    26872 
    26873 > view matrix models
    26874 > #24,-0.96175,0.24118,-0.12989,569.68,0.068309,-0.24805,-0.96634,385.04,-0.26528,-0.93825,0.22208,431.17,#26,-0.86655,-0.28482,-0.40984,441.6,0.48276,-0.68666,-0.54354,104.36,-0.1266,-0.66886,0.73253,211.72,#27,0.16042,0.86849,-0.46903,422.56,0.97152,-0.2229,-0.080438,117.79,-0.1744,-0.44277,-0.87951,245.98,#28,-0.41017,-0.10451,-0.906,473.02,-0.50461,0.85351,0.12999,171.52,0.75969,0.51049,-0.40282,249.01,#29,0.66562,0.6911,-0.28165,354.57,-0.17469,0.5112,0.84152,139.9,0.72556,-0.51093,0.461,231.85,#30,0.28116,-0.074334,0.95678,400.17,0.94575,0.1906,-0.26311,123.38,-0.1628,0.97885,0.12389,267.69,#31,-0.21534,-0.82201,-0.52719,625.02,0.15245,0.50494,-0.84959,-108.49,0.96457,-0.26332,0.016578,466.37,#32,-0.24983,0.47883,0.84161,389.14,0.5522,0.78443,-0.28238,80.271,-0.7954,0.39419,-0.46039,164.47,#33,-0.36961,0.92223,0.1135,377.88,-0.76951,-0.37227,0.51891,130.06,0.52081,0.10446,0.84726,191.9,#34,-0.84058,0.19207,-0.50649,410.63,-0.071964,0.88714,0.45585,155.84,0.53689,0.41963,-0.73189,202.32,#35,0.84054,-0.023977,0.54121,379.04,-0.53285,0.14368,0.83392,130.74,-0.097758,-0.98933,0.108,191.42
    26875 
    26876 > ui mousemode right "translate selected models"
    26877 
    26878 > view matrix models
    26879 > #24,-0.96175,0.24118,-0.12989,573.17,0.068309,-0.24805,-0.96634,385.07,-0.26528,-0.93825,0.22208,436.15,#26,-0.86655,-0.28482,-0.40984,445.09,0.48276,-0.68666,-0.54354,104.39,-0.1266,-0.66886,0.73253,216.7,#27,0.16042,0.86849,-0.46903,426.05,0.97152,-0.2229,-0.080438,117.82,-0.1744,-0.44277,-0.87951,250.96,#28,-0.41017,-0.10451,-0.906,476.51,-0.50461,0.85351,0.12999,171.54,0.75969,0.51049,-0.40282,253.99,#29,0.66562,0.6911,-0.28165,358.06,-0.17469,0.5112,0.84152,139.92,0.72556,-0.51093,0.461,236.83,#30,0.28116,-0.074334,0.95678,403.66,0.94575,0.1906,-0.26311,123.41,-0.1628,0.97885,0.12389,272.68,#31,-0.21534,-0.82201,-0.52719,628.51,0.15245,0.50494,-0.84959,-108.47,0.96457,-0.26332,0.016578,471.35,#32,-0.24983,0.47883,0.84161,392.63,0.5522,0.78443,-0.28238,80.296,-0.7954,0.39419,-0.46039,169.45,#33,-0.36961,0.92223,0.1135,381.36,-0.76951,-0.37227,0.51891,130.09,0.52081,0.10446,0.84726,196.89,#34,-0.84058,0.19207,-0.50649,414.11,-0.071964,0.88714,0.45585,155.86,0.53689,0.41963,-0.73189,207.3,#35,0.84054,-0.023977,0.54121,382.53,-0.53285,0.14368,0.83392,130.77,-0.097758,-0.98933,0.108,196.4
    26880 
    26881 > fitmap #24 inMap #25
    26882 
    26883 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    26884 points 
    26885 correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 
    26886 steps = 152, shift = 8.12, angle = 18.7 degrees 
    26887  
    26888 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    26889 (#25) coordinates: 
    26890 Matrix rotation and translation 
    26891 -0.53704927 -0.84347043 -0.01165063 402.33042921 
    26892 0.84318173 -0.53717160 0.02216432 56.75380643 
    26893 -0.02495334 0.00207973 0.99968646 -108.78435477 
    26894 Axis -0.01190675 0.00788624 0.99989801 
    26895 Axis point 184.70237821 138.81569158 0.00000000 
    26896 Rotation angle (degrees) 122.49779840 
    26897 Shift along axis -113.11613255 
    26898  
    26899 
    26900 > fitmap #24 inMap #25
    26901 
    26902 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    26903 points 
    26904 correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 
    26905 steps = 152, shift = 8.12, angle = 18.7 degrees 
    26906  
    26907 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    26908 (#25) coordinates: 
    26909 Matrix rotation and translation 
    26910 -0.53704927 -0.84347043 -0.01165063 402.33042921 
    26911 0.84318173 -0.53717160 0.02216432 56.75380643 
    26912 -0.02495334 0.00207973 0.99968646 -108.78435477 
    26913 Axis -0.01190675 0.00788624 0.99989801 
    26914 Axis point 184.70237821 138.81569158 0.00000000 
    26915 Rotation angle (degrees) 122.49779840 
    26916 Shift along axis -113.11613255 
    26917  
    26918 
    26919 > fitmap #24 inMap #25
    26920 
    26921 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    26922 points 
    26923 correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 
    26924 steps = 152, shift = 8.12, angle = 18.7 degrees 
    26925  
    26926 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    26927 (#25) coordinates: 
    26928 Matrix rotation and translation 
    26929 -0.53704927 -0.84347043 -0.01165063 402.33042921 
    26930 0.84318173 -0.53717160 0.02216432 56.75380643 
    26931 -0.02495334 0.00207973 0.99968646 -108.78435477 
    26932 Axis -0.01190675 0.00788624 0.99989801 
    26933 Axis point 184.70237821 138.81569158 0.00000000 
    26934 Rotation angle (degrees) 122.49779840 
    26935 Shift along axis -113.11613255 
    26936  
    26937 
    26938 > ui mousemode right "rotate selected models"
    26939 
    26940 > view matrix models
    26941 > #24,-0.9551,0.15287,-0.2538,617.26,0.19462,-0.32217,-0.92646,364.85,-0.2234,-0.93426,0.27795,414.17,#26,-0.79469,-0.41492,-0.44308,439.02,0.59677,-0.66761,-0.44516,96.067,-0.1111,-0.61817,0.77815,215.84,#27,0.28727,0.80303,-0.52214,423.96,0.92931,-0.36574,-0.051206,113.63,-0.23208,-0.47052,-0.85132,250.21,#28,-0.43641,0.045328,-0.8986,481.63,-0.4054,0.8817,0.24136,159.58,0.80324,0.46963,-0.36641,248.08,#29,0.67195,0.72835,-0.13412,359.14,-0.23631,0.38249,0.89323,144.67,0.70189,-0.56851,0.42913,238.13,#30,0.40356,0.0060483,0.91493,403.78,0.88691,0.24309,-0.39281,123.37,-0.22479,0.96998,0.092739,272.62,#31,-0.13951,-0.75483,-0.64091,603.72,0.22512,0.60611,-0.76286,-129.42,0.96429,-0.25071,0.08537,472.42,#32,-0.21108,0.60586,0.76706,381.23,0.54624,0.72389,-0.42144,77.711,-0.8106,0.33004,-0.48374,172.41,#33,-0.44677,0.86423,0.2313,378.63,-0.68384,-0.49659,0.53457,129.79,0.57685,0.080651,0.81286,197.71,#34,-0.8123,0.33838,-0.47505,415.22,0.074464,0.868,0.49095,151,0.57847,0.36342,-0.73027,205.23,#35,0.74984,-0.056281,0.65922,379.85,-0.65259,0.10108,0.75094,130.27,-0.10889,-0.99329,0.039062,197.13
    26942 
    26943 > fitmap #24 inMap #25
    26944 
    26945 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    26946 points 
    26947 correlation = 0.7375, correlation about mean = 0.2516, overlap = 17.37 
    26948 steps = 132, shift = 7.97, angle = 15.7 degrees 
    26949  
    26950 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    26951 (#25) coordinates: 
    26952 Matrix rotation and translation 
    26953 -0.53715115 -0.84340573 -0.01163786 402.33544824 
    26954 0.84311660 -0.53727309 0.02218203 56.78127972 
    26955 -0.02496116 0.00210302 0.99968622 -108.78802057 
    26956 Axis -0.01190435 0.00789906 0.99989794 
    26957 Axis point 184.69932070 138.81584890 0.00000000 
    26958 Rotation angle (degrees) 122.50471451 
    26959 Shift along axis -113.11794171 
    26960  
    26961 
    26962 > fitmap #24 inMap #25
    26963 
    26964 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    26965 points 
    26966 correlation = 0.7375, correlation about mean = 0.2516, overlap = 17.37 
    26967 steps = 132, shift = 7.97, angle = 15.7 degrees 
    26968  
    26969 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    26970 (#25) coordinates: 
    26971 Matrix rotation and translation 
    26972 -0.53715115 -0.84340573 -0.01163786 402.33544824 
    26973 0.84311660 -0.53727309 0.02218203 56.78127972 
    26974 -0.02496116 0.00210302 0.99968622 -108.78802057 
    26975 Axis -0.01190435 0.00789906 0.99989794 
    26976 Axis point 184.69932070 138.81584890 0.00000000 
    26977 Rotation angle (degrees) 122.50471451 
    26978 Shift along axis -113.11794171 
    26979  
    26980 
    26981 > fitmap #24 inMap #25
    26982 
    26983 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    26984 points 
    26985 correlation = 0.7375, correlation about mean = 0.2516, overlap = 17.37 
    26986 steps = 132, shift = 7.97, angle = 15.7 degrees 
    26987  
    26988 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    26989 (#25) coordinates: 
    26990 Matrix rotation and translation 
    26991 -0.53715115 -0.84340573 -0.01163786 402.33544824 
    26992 0.84311660 -0.53727309 0.02218203 56.78127972 
    26993 -0.02496116 0.00210302 0.99968622 -108.78802057 
    26994 Axis -0.01190435 0.00789906 0.99989794 
    26995 Axis point 184.69932070 138.81584890 0.00000000 
    26996 Rotation angle (degrees) 122.50471451 
    26997 Shift along axis -113.11794171 
    26998  
    26999 
    27000 > view matrix models
    27001 > #24,-0.94277,0.073832,-0.32515,646.62,0.29536,-0.26761,-0.91714,330.54,-0.15473,-0.96069,0.23049,415.69,#26,-0.73973,-0.50696,-0.44248,433.98,0.67241,-0.58194,-0.4574,93.676,-0.025612,-0.63588,0.77136,210.69,#27,0.36105,0.73993,-0.56758,422.41,0.9137,-0.40243,0.056599,110.05,-0.18653,-0.53904,-0.82137,246.94,#28,-0.43083,0.15199,-0.88954,483.96,-0.42029,0.83849,0.34683,150.64,0.79859,0.52329,-0.29737,244.53,#29,0.68186,0.73097,-0.027412,360.26,-0.34514,0.35454,0.86901,147.59,0.64494,-0.58308,0.49403,240.69,#30,0.47306,0.078574,0.87752,404.42,0.86057,0.17218,-0.47935,119.95,-0.18875,0.98193,0.013833,271.07,#31,-0.068129,-0.70639,-0.70454,589.69,0.16786,0.68799,-0.70604,-163.37,0.98345,-0.16637,0.071704,441.95,#32,-0.20008,0.68732,0.69826,372.56,0.61914,0.64104,-0.45358,83.737,-0.75936,0.34156,-0.55381,169.54,#33,-0.47889,0.81674,0.32187,376.18,-0.6799,-0.57701,0.45254,133.91,0.55533,-0.0021241,0.83163,198.32,#34,-0.77098,0.43663,-0.46362,414.94,0.10626,0.80597,0.58234,151.15,0.62793,0.39971,-0.66778,205.1,#35,0.67863,-0.097371,0.728,377.41,-0.70823,0.1759,0.68372,134.32,-0.19463,-0.97958,0.050411,197.71
    27002 
    27003 > view matrix models
    27004 > #24,-0.98044,0.073253,-0.18266,623.02,0.13546,-0.42211,-0.89637,390.95,-0.14276,-0.90358,0.40393,363.06,#26,-0.82796,-0.44396,-0.34262,438.21,0.55301,-0.7478,-0.36739,95.318,-0.093102,-0.49365,0.86466,215.45,#27,0.22038,0.76775,-0.60166,425.87,0.90559,-0.39021,-0.16623,116.2,-0.3624,-0.50822,-0.78127,249.04,#28,-0.33529,0.05209,-0.94067,480.9,-0.32482,0.93086,0.16732,163.51,0.88435,0.36165,-0.29519,235.82,#29,0.74864,0.64994,-0.13084,358.83,-0.13136,0.33885,0.93162,143.45,0.64983,-0.68027,0.33905,240.42,#30,0.33861,0.091849,0.93643,407.62,0.86824,0.35304,-0.34859,127.76,-0.36262,0.93109,0.039798,272.21,#31,-0.052589,-0.8027,-0.59405,637.71,0.32966,0.54757,-0.76908,-93.517,0.94264,-0.23628,0.23582,476.87,#32,-0.31541,0.60244,0.7332,377.25,0.44204,0.77697,-0.44825,70.16,-0.83971,0.18273,-0.51136,180.59,#33,-0.35559,0.88952,0.28689,374.85,-0.62762,-0.45471,0.63193,124.69,0.69256,0.044647,0.71997,200.09,#34,-0.75303,0.33339,-0.56727,411.01,0.11313,0.9149,0.38751,147.84,0.64819,0.22763,-0.72666,201.35,#35,0.76395,-0.15966,0.62521,375.98,-0.63522,-0.015717,0.77217,125.14,-0.11346,-0.98705,-0.11343,199.33
    27005 
    27006 > view matrix models
    27007 > #24,-0.97204,0.010694,-0.23459,645.53,0.21319,-0.37869,-0.90064,366.75,-0.098468,-0.92546,0.36582,366.69,#26,-0.78741,-0.51484,-0.33899,434.36,0.61548,-0.68705,-0.38619,93.329,-0.034082,-0.51273,0.85787,211.8,#27,0.27429,0.71882,-0.6388,424.76,0.90494,-0.41768,-0.081431,113.27,-0.32535,-0.55574,-0.76505,246.82,#28,-0.32786,0.13331,-0.93527,482.66,-0.34533,0.90457,0.24999,157.1,0.87935,0.40494,-0.25053,233.87,#29,0.75873,0.64951,-0.049725,359.67,-0.21876,0.32596,0.91973,145.71,0.61358,-0.68695,0.3894,242.12,#30,0.38936,0.14968,0.90884,408.22,0.8592,0.29654,-0.41693,124.9,-0.33191,0.94322,-0.01315,271.22,#31,0.0043923,-0.76757,-0.64096,628.18,0.28308,0.6157,-0.73538,-122.78,0.95909,-0.17821,0.21998,455.78,#32,-0.31044,0.66428,0.67997,370.55,0.50679,0.72084,-0.47282,74.49,-0.80423,0.19782,-0.56042,178.08,#33,-0.37712,0.85439,0.35749,372.86,-0.63549,-0.5195,0.57121,127.96,0.67375,-0.011766,0.73887,200.33,#34,-0.71986,0.40789,-0.56163,410.66,0.13335,0.87532,0.46479,148.34,0.68119,0.25969,-0.68451,201.36,#35,0.71043,-0.19419,0.67644,374,-0.68199,0.047263,0.72983,128.36,-0.1737,-0.97982,-0.098863,199.56
    27008 
    27009 > fitmap #24 inMap #25
    27010 
    27011 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27012 points 
    27013 correlation = 0.7375, correlation about mean = 0.2517, overlap = 17.37 
    27014 steps = 120, shift = 7.43, angle = 12.6 degrees 
    27015  
    27016 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27017 (#25) coordinates: 
    27018 Matrix rotation and translation 
    27019 -0.53707590 -0.84345346 -0.01165140 402.34012599 
    27020 0.84316858 -0.53719856 0.02201090 56.80819392 
    27021 -0.02482429 0.00199743 0.99968984 -108.80732978 
    27022 Axis -0.01186481 0.00780943 0.99989911 
    27023 Axis point 184.69738864 138.83872102 0.00000000 
    27024 Rotation angle (degrees) 122.49950368 
    27025 Shift along axis -113.12640341 
    27026  
    27027 
    27028 > fitmap #24 inMap #25
    27029 
    27030 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27031 points 
    27032 correlation = 0.7375, correlation about mean = 0.2517, overlap = 17.37 
    27033 steps = 120, shift = 7.43, angle = 12.6 degrees 
    27034  
    27035 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27036 (#25) coordinates: 
    27037 Matrix rotation and translation 
    27038 -0.53707590 -0.84345346 -0.01165140 402.34012599 
    27039 0.84316858 -0.53719856 0.02201090 56.80819392 
    27040 -0.02482429 0.00199743 0.99968984 -108.80732978 
    27041 Axis -0.01186481 0.00780943 0.99989911 
    27042 Axis point 184.69738864 138.83872102 0.00000000 
    27043 Rotation angle (degrees) 122.49950368 
    27044 Shift along axis -113.12640341 
    27045  
    27046 
    27047 > fitmap #24 inMap #25
    27048 
    27049 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27050 points 
    27051 correlation = 0.7375, correlation about mean = 0.2517, overlap = 17.37 
    27052 steps = 120, shift = 7.43, angle = 12.6 degrees 
    27053  
    27054 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27055 (#25) coordinates: 
    27056 Matrix rotation and translation 
    27057 -0.53707590 -0.84345346 -0.01165140 402.34012599 
    27058 0.84316858 -0.53719856 0.02201090 56.80819392 
    27059 -0.02482429 0.00199743 0.99968984 -108.80732978 
    27060 Axis -0.01186481 0.00780943 0.99989911 
    27061 Axis point 184.69738864 138.83872102 0.00000000 
    27062 Rotation angle (degrees) 122.49950368 
    27063 Shift along axis -113.12640341 
    27064  
    27065 
    27066 > fitmap #24 inMap #25
    27067 
    27068 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27069 points 
    27070 correlation = 0.7375, correlation about mean = 0.2517, overlap = 17.37 
    27071 steps = 120, shift = 7.43, angle = 12.6 degrees 
    27072  
    27073 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27074 (#25) coordinates: 
    27075 Matrix rotation and translation 
    27076 -0.53707590 -0.84345346 -0.01165140 402.34012599 
    27077 0.84316858 -0.53719856 0.02201090 56.80819392 
    27078 -0.02482429 0.00199743 0.99968984 -108.80732978 
    27079 Axis -0.01186481 0.00780943 0.99989911 
    27080 Axis point 184.69738864 138.83872102 0.00000000 
    27081 Rotation angle (degrees) 122.49950368 
    27082 Shift along axis -113.12640341 
    27083  
    27084 
    27085 > view matrix models
    27086 > #24,-0.91179,0.065394,-0.40541,659.65,0.37281,-0.28214,-0.88398,309.91,-0.17219,-0.95714,0.23287,418.1,#26,-0.67941,-0.54488,-0.49142,430.78,0.73249,-0.5429,-0.41075,89.985,-0.042981,-0.63904,0.76797,211.7,#27,0.44021,0.71114,-0.54818,420.09,0.87792,-0.46894,0.096668,107.62,-0.18832,-0.52381,-0.83076,247.63,#28,-0.47708,0.21477,-0.85221,484.9,-0.3745,0.82756,0.4182,142.82,0.79507,0.51867,-0.31438,245.86,#29,0.64017,0.76724,0.039069,361.46,-0.39555,0.28559,0.87291,150.25,0.65858,-0.57427,0.48631,240.08,#30,0.54733,0.078007,0.83327,402.64,0.81546,0.17432,-0.55194,119.25,-0.18832,0.98159,0.031801,271.39,#31,-0.068538,-0.64273,-0.76302,560.54,0.18249,0.74384,-0.64297,-177.11,0.98082,-0.18331,0.066312,447.54,#32,-0.13517,0.73406,0.66549,369.37,0.62656,0.58364,-0.51652,84.899,-0.76757,0.34715,-0.53882,169.66,#33,-0.54334,0.76466,0.34652,376.8,-0.63143,-0.64424,0.43156,134.86,0.55324,0.015687,0.83287,198.08,#34,-0.7686,0.49745,-0.40224,416.78,0.17735,0.76981,0.61314,148.81,0.61465,0.39992,-0.6799,205.34,#35,0.61884,-0.067176,0.78264,378.07,-0.76511,0.1741,0.61992,135.16,-0.1779,-0.98243,0.056343,197.48
    27087 
    27088 > fitmap #24 inMap #25
    27089 
    27090 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27091 points 
    27092 correlation = 0.7375, correlation about mean = 0.2514, overlap = 17.37 
    27093 steps = 180, shift = 8.43, angle = 23.4 degrees 
    27094  
    27095 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27096 (#25) coordinates: 
    27097 Matrix rotation and translation 
    27098 -0.53705460 -0.84346654 -0.01168611 402.33850239 
    27099 0.84317691 -0.53717775 0.02219872 56.72588531 
    27100 -0.02500139 0.00206846 0.99968528 -108.77679599 
    27101 Axis -0.01193388 0.00789374 0.99989763 
    27102 Axis point 184.71253914 138.80253508 0.00000000 
    27103 Rotation angle (degrees) 122.49822817 
    27104 Shift along axis -113.11933930 
    27105  
    27106 
    27107 > fitmap #24 inMap #25
    27108 
    27109 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27110 points 
    27111 correlation = 0.7375, correlation about mean = 0.2514, overlap = 17.37 
    27112 steps = 180, shift = 8.43, angle = 23.4 degrees 
    27113  
    27114 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27115 (#25) coordinates: 
    27116 Matrix rotation and translation 
    27117 -0.53705460 -0.84346654 -0.01168611 402.33850239 
    27118 0.84317691 -0.53717775 0.02219872 56.72588531 
    27119 -0.02500139 0.00206846 0.99968528 -108.77679599 
    27120 Axis -0.01193388 0.00789374 0.99989763 
    27121 Axis point 184.71253914 138.80253508 0.00000000 
    27122 Rotation angle (degrees) 122.49822817 
    27123 Shift along axis -113.11933930 
    27124  
    27125 
    27126 > view matrix models
    27127 > #24,-0.99402,-0.016471,-0.10792,627.58,0.10379,-0.44888,-0.88754,401.09,-0.033823,-0.89344,0.44791,328.4,#26,-0.8499,-0.47362,-0.23099,436.49,0.52676,-0.77526,-0.34856,95.88,-0.013993,-0.41792,0.90838,211.46,#27,0.14979,0.717,-0.68079,427.39,0.89914,-0.38518,-0.20783,117.48,-0.41124,-0.58099,-0.70237,245.62,#28,-0.2228,0.063847,-0.97277,479.08,-0.30519,0.94313,0.1318,165.84,0.92586,0.32624,-0.19065,224.84,#29,0.8211,0.55795,-0.1204,358.99,-0.089699,0.33444,0.93814,142.59,0.5637,-0.7595,0.32466,243.92,#30,0.26834,0.18568,0.94526,411.53,0.86506,0.3853,-0.32126,129.29,-0.42387,0.90391,-0.057235,270.38,#31,0.044276,-0.84086,-0.53944,670.05,0.35834,0.51741,-0.7771,-78.867,0.93254,-0.1589,0.32422,453.76,#32,-0.42197,0.59491,0.68412,372.79,0.40587,0.79871,-0.44421,67.945,-0.81068,0.090225,-0.57849,184.52,#33,-0.2553,0.90251,0.34685,370.92,-0.61447,-0.42842,0.66248,122.99,0.74649,-0.043995,0.66394,202.58,#34,-0.67795,0.32853,-0.65761,406.26,0.11327,0.93058,0.34813,147.15,0.72633,0.16152,-0.6681,199.04,#35,0.76549,-0.2698,0.58414,371.94,-0.61733,-0.05195,0.78499,123.44,-0.18145,-0.96151,-0.20633,201.69
    27128 
    27129 > fitmap #24 inMap #25
    27130 
    27131 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27132 points 
    27133 correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 
    27134 steps = 108, shift = 6.93, angle = 8.53 degrees 
    27135  
    27136 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27137 (#25) coordinates: 
    27138 Matrix rotation and translation 
    27139 -0.53706199 -0.84346186 -0.01168449 402.33865259 
    27140 0.84317250 -0.53718512 0.02218803 56.72804860 
    27141 -0.02499150 0.00206430 0.99968554 -108.77872519 
    27142 Axis -0.01193007 0.00788887 0.99989771 
    27143 Axis point 184.71252822 138.80238569 0.00000000 
    27144 Rotation angle (degrees) 122.49872094 
    27145 Shift along axis -113.12000798 
    27146  
    27147 
    27148 > fitmap #24 inMap #25
    27149 
    27150 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27151 points 
    27152 correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 
    27153 steps = 108, shift = 6.93, angle = 8.53 degrees 
    27154  
    27155 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27156 (#25) coordinates: 
    27157 Matrix rotation and translation 
    27158 -0.53706199 -0.84346186 -0.01168449 402.33865259 
    27159 0.84317250 -0.53718512 0.02218803 56.72804860 
    27160 -0.02499150 0.00206430 0.99968554 -108.77872519 
    27161 Axis -0.01193007 0.00788887 0.99989771 
    27162 Axis point 184.71252822 138.80238569 0.00000000 
    27163 Rotation angle (degrees) 122.49872094 
    27164 Shift along axis -113.12000798 
    27165  
    27166 
    27167 > fitmap #24 inMap #25
    27168 
    27169 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27170 points 
    27171 correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 
    27172 steps = 108, shift = 6.93, angle = 8.53 degrees 
    27173  
    27174 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27175 (#25) coordinates: 
    27176 Matrix rotation and translation 
    27177 -0.53706199 -0.84346186 -0.01168449 402.33865259 
    27178 0.84317250 -0.53718512 0.02218803 56.72804860 
    27179 -0.02499150 0.00206430 0.99968554 -108.77872519 
    27180 Axis -0.01193007 0.00788887 0.99989771 
    27181 Axis point 184.71252822 138.80238569 0.00000000 
    27182 Rotation angle (degrees) 122.49872094 
    27183 Shift along axis -113.12000798 
    27184  
    27185 
    27186 > view matrix models
    27187 > #24,-0.99922,0.0022816,-0.039311,609.63,0.032689,-0.50853,-0.86042,422.14,-0.021954,-0.86104,0.50806,305.97,#26,-0.88473,-0.42418,-0.1932,438.69,0.46493,-0.83254,-0.30118,97.289,-0.033096,-0.35629,0.93379,213.26,#27,0.080787,0.73386,-0.67448,428.58,0.87733,-0.37351,-0.30131,120.48,-0.47304,-0.5674,-0.67401,246.07,#28,-0.18782,0.0024265,-0.9822,476.48,-0.25626,0.96524,0.051388,170.76,0.94818,0.26135,-0.18067,221.14,#29,0.83325,0.52242,-0.18102,358.59,0.0054018,0.3197,0.9475,140.66,0.55287,-0.79049,0.26357,243.98,#30,0.20124,0.17109,0.96448,412.29,0.85071,0.45759,-0.25867,132.82,-0.4856,0.87255,-0.053463,270.28,#31,0.03233,-0.87711,-0.4792,687.29,0.42298,0.44641,-0.78855,-44.148,0.90556,-0.1772,0.38543,462.24,#32,-0.46072,0.53888,0.70523,376.72,0.31997,0.84199,-0.43436,63.278,-0.82786,0.025538,-0.56035,189.45,#33,-0.20117,0.92951,0.30909,371.26,-0.5785,-0.36737,0.72827,119.16,0.79048,-0.032302,0.61163,203.83,#34,-0.67386,0.26498,-0.68971,404.77,0.11542,0.95977,0.25597,145.4,0.72979,0.092883,-0.67733,198.02,#35,0.8041,-0.2791,0.52491,372.24,-0.57414,-0.13549,0.80747,119.62,-0.15424,-0.95066,-0.26918,202.89
    27188 
    27189 > fitmap #24 inMap #25
    27190 
    27191 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27192 points 
    27193 correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 
    27194 steps = 96, shift = 6.77, angle = 7.86 degrees 
    27195  
    27196 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27197 (#25) coordinates: 
    27198 Matrix rotation and translation 
    27199 -0.53711631 -0.84342763 -0.01165873 402.33694809 
    27200 0.84313678 -0.53723864 0.02224909 56.75185351 
    27201 -0.02502902 0.00212044 0.99968448 -108.77613969 
    27202 Axis -0.01193348 0.00792671 0.99989737 
    27203 Axis point 184.70501377 138.80739150 0.00000000 
    27204 Rotation angle (degrees) 122.50242003 
    27205 Shift along axis -113.11640090 
    27206  
    27207 
    27208 > fitmap #24 inMap #25
    27209 
    27210 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27211 points 
    27212 correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 
    27213 steps = 96, shift = 6.77, angle = 7.86 degrees 
    27214  
    27215 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27216 (#25) coordinates: 
    27217 Matrix rotation and translation 
    27218 -0.53711631 -0.84342763 -0.01165873 402.33694809 
    27219 0.84313678 -0.53723864 0.02224909 56.75185351 
    27220 -0.02502902 0.00212044 0.99968448 -108.77613969 
    27221 Axis -0.01193348 0.00792671 0.99989737 
    27222 Axis point 184.70501377 138.80739150 0.00000000 
    27223 Rotation angle (degrees) 122.50242003 
    27224 Shift along axis -113.11640090 
    27225  
    27226 
    27227 > view matrix models
    27228 > #24,-0.99188,0.1263,-0.015154,577.45,-0.065958,-0.61252,-0.7877,447.89,-0.10877,-0.7803,0.61587,283.79,#26,-0.91338,-0.31744,-0.25488,443.82,0.3702,-0.90812,-0.19561,98.985,-0.16937,-0.27302,0.94698,222.54,#27,0.051569,0.81292,-0.58008,428.75,0.81285,-0.37162,-0.44852,125.14,-0.58018,-0.44839,-0.67995,250.91,#28,-0.25465,-0.10304,-0.96153,474.41,-0.1489,0.98663,-0.066295,176.13,0.9555,0.12629,-0.26659,223.4,#29,0.77379,0.56634,-0.28375,357.82,0.15601,0.26376,0.95189,138.1,0.61394,-0.78083,0.11574,240.31,#30,0.17447,0.048855,0.98345,409.26,0.79646,0.58027,-0.17012,138.87,-0.57897,0.81296,0.062328,271.78,#31,-0.089026,-0.89063,-0.44592,678.68,0.5371,0.33411,-0.77453,15.14,0.83881,-0.30846,0.44861,508.2,#32,-0.40541,0.46175,0.78894,387.44,0.16535,0.88585,-0.4335,56.434,-0.89906,-0.045292,-0.43548,198.55,#33,-0.22603,0.95584,0.18782,375.99,-0.48854,-0.27804,0.82706,112.92,0.84276,0.095181,0.52981,204.66,#34,-0.7472,0.17382,-0.64146,407.59,0.14348,0.98462,0.099678,141.28,0.64892,-0.017555,-0.76065,198.11,#35,0.86027,-0.17553,0.47868,377.02,-0.50979,-0.28268,0.81253,113.35,-0.0073119,-0.94302,-0.33267,203.75
    27229 
    27230 > fitmap #24 inMap #25
    27231 
    27232 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27233 points 
    27234 correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 
    27235 steps = 100, shift = 6.9, angle = 9.9 degrees 
    27236  
    27237 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27238 (#25) coordinates: 
    27239 Matrix rotation and translation 
    27240 -0.53709987 -0.84343794 -0.01167000 402.33815969 
    27241 0.84314628 -0.53722242 0.02228108 56.73246859 
    27242 -0.02506209 0.00212765 0.99968364 -108.77255181 
    27243 Axis -0.01194803 0.00793955 0.99989710 
    27244 Axis point 184.70940740 138.80074964 0.00000000 
    27245 Rotation angle (degrees) 122.50133899 
    27246 Shift along axis -113.11807635 
    27247  
    27248 
    27249 > fitmap #24 inMap #25
    27250 
    27251 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27252 points 
    27253 correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 
    27254 steps = 100, shift = 6.9, angle = 9.9 degrees 
    27255  
    27256 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27257 (#25) coordinates: 
    27258 Matrix rotation and translation 
    27259 -0.53709987 -0.84343794 -0.01167000 402.33815969 
    27260 0.84314628 -0.53722242 0.02228108 56.73246859 
    27261 -0.02506209 0.00212765 0.99968364 -108.77255181 
    27262 Axis -0.01194803 0.00793955 0.99989710 
    27263 Axis point 184.70940740 138.80074964 0.00000000 
    27264 Rotation angle (degrees) 122.50133899 
    27265 Shift along axis -113.11807635 
    27266  
    27267 
    27268 > fitmap #24 inMap #25
    27269 
    27270 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27271 points 
    27272 correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 
    27273 steps = 100, shift = 6.9, angle = 9.9 degrees 
    27274  
    27275 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27276 (#25) coordinates: 
    27277 Matrix rotation and translation 
    27278 -0.53709987 -0.84343794 -0.01167000 402.33815969 
    27279 0.84314628 -0.53722242 0.02228108 56.73246859 
    27280 -0.02506209 0.00212765 0.99968364 -108.77255181 
    27281 Axis -0.01194803 0.00793955 0.99989710 
    27282 Axis point 184.70940740 138.80074964 0.00000000 
    27283 Rotation angle (degrees) 122.50133899 
    27284 Shift along axis -113.11807635 
    27285  
    27286 
    27287 > view matrix models
    27288 > #24,-0.99282,0.076835,-0.091661,604.7,0.03504,-0.54588,-0.83713,424.09,-0.11436,-0.83433,0.53927,312.97,#26,-0.87462,-0.39612,-0.27952,440.52,0.46599,-0.84597,-0.25921,96.058,-0.13379,-0.35696,0.92449,219.27,#27,0.1299,0.77965,-0.6126,427.64,0.85542,-0.40054,-0.32837,120.71,-0.50138,-0.48137,-0.71896,249.98,#28,-0.27514,-0.014265,-0.9613,477.97,-0.21372,0.97578,0.046689,169.67,0.93735,0.21829,-0.27152,227.37,#29,0.77954,0.59447,-0.19728,358.28,0.0269,0.28291,0.95877,141.01,0.62577,-0.75271,0.20455,240.65,#30,0.2508,0.094394,0.96343,409.31,0.82787,0.49492,-0.264,134.15,-0.50174,0.8638,0.045979,272.05,#31,-0.047045,-0.85406,-0.51804,664.41,0.46225,0.44113,-0.76924,-35.134,0.8855,-0.27565,0.37404,495.79,#32,-0.38117,0.54049,0.75005,380.72,0.28483,0.84049,-0.46092,61.241,-0.87954,0.037945,-0.47432,191.41,#33,-0.27646,0.92588,0.25753,374.39,-0.54253,-0.37155,0.7534,117.72,0.79324,0.068567,0.60503,202.79,#34,-0.73656,0.26247,-0.62336,408.49,0.14963,0.96203,0.22827,143.57,0.65961,0.074858,-0.74787,198.93,#35,0.81056,-0.19248,0.55312,375.46,-0.58305,-0.17619,0.7931,118.14,-0.0552,-0.96535,-0.25504,201.93
    27289 
    27290 > fitmap #24 inMap #25
    27291 
    27292 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27293 points 
    27294 correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 
    27295 steps = 64, shift = 6.9, angle = 3.2 degrees 
    27296  
    27297 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27298 (#25) coordinates: 
    27299 Matrix rotation and translation 
    27300 -0.53703159 -0.84348159 -0.01165744 402.33132509 
    27301 0.84319357 -0.53715415 0.02213663 56.74756624 
    27302 -0.02493368 0.00205859 0.99968700 -108.78731108 
    27303 Axis -0.01190270 0.00787045 0.99989819 
    27304 Axis point 184.70483206 138.81482616 0.00000000 
    27305 Rotation angle (degrees) 122.49658715 
    27306 Shift along axis -113.11843685 
    27307  
    27308 
    27309 > fitmap #24 inMap #25
    27310 
    27311 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27312 points 
    27313 correlation = 0.7375, correlation about mean = 0.2515, overlap = 17.37 
    27314 steps = 64, shift = 6.9, angle = 3.2 degrees 
    27315  
    27316 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27317 (#25) coordinates: 
    27318 Matrix rotation and translation 
    27319 -0.53703159 -0.84348159 -0.01165744 402.33132509 
    27320 0.84319357 -0.53715415 0.02213663 56.74756624 
    27321 -0.02493368 0.00205859 0.99968700 -108.78731108 
    27322 Axis -0.01190270 0.00787045 0.99989819 
    27323 Axis point 184.70483206 138.81482616 0.00000000 
    27324 Rotation angle (degrees) 122.49658715 
    27325 Shift along axis -113.11843685 
    27326  
    27327 
    27328 > view matrix models
    27329 > #24,-0.99028,0.060441,-0.1253,614.97,0.076335,-0.5169,-0.85264,412.97,-0.1163,-0.85391,0.50726,324.47,#26,-0.85603,-0.42562,-0.29336,439.15,0.50299,-0.81669,-0.28286,95.013,-0.11919,-0.38969,0.9132,218.01,#27,0.16401,0.76649,-0.62096,427.05,0.86806,-0.41116,-0.27824,118.96,-0.46858,-0.4934,-0.73279,249.58,#28,-0.28735,0.021005,-0.9576,479.27,-0.23807,0.96682,0.092647,166.83,0.92777,0.2546,-0.27281,228.98,#29,0.77702,0.60815,-0.16245,358.53,-0.025574,0.28836,0.95718,142.17,0.62895,-0.7396,0.23961,240.78,#30,0.2838,0.10863,0.95271,409.12,0.83604,0.45851,-0.30133,132.25,-0.46956,0.88202,0.039305,272.07,#31,-0.034025,-0.83574,-0.54807,656.68,0.43037,0.48268,-0.76276,-54.663,0.90201,-0.26182,0.34325,490.17,#32,-0.36613,0.5712,0.73463,378.23,0.33144,0.81772,-0.47062,63.517,-0.86954,0.071184,-0.48871,188.67,#33,-0.30021,0.91108,0.2825,373.95,-0.56101,-0.40817,0.72019,119.73,0.77145,0.057727,0.63366,202.13,#34,-0.73361,0.29772,-0.61088,409,0.15235,0.9481,0.2791,144.41,0.66227,0.11168,-0.7409,199.35,#35,0.78856,-0.19431,0.58345,375.04,-0.61046,-0.13278,0.78084,120.14,-0.074255,-0.97191,-0.22333,201.29
    27330 
    27331 > fitmap #24 inMap #25
    27332 
    27333 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27334 points 
    27335 correlation = 0.7375, correlation about mean = 0.2514, overlap = 17.37 
    27336 steps = 52, shift = 6.95, angle = 2.48 degrees 
    27337  
    27338 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27339 (#25) coordinates: 
    27340 Matrix rotation and translation 
    27341 -0.53711118 -0.84343043 -0.01169252 402.34326612 
    27342 0.84313715 -0.53723416 0.02234320 56.71029643 
    27343 -0.02512655 0.00214238 0.99968199 -108.76329695 
    27344 Axis -0.01197623 0.00796449 0.99989656 
    27345 Axis point 184.71605435 138.78965469 0.00000000 
    27346 Rotation angle (degrees) 122.50217823 
    27347 Shift along axis -113.11893456 
    27348  
    27349 
    27350 > fitmap #24 inMap #25
    27351 
    27352 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27353 points 
    27354 correlation = 0.7375, correlation about mean = 0.2514, overlap = 17.37 
    27355 steps = 52, shift = 6.95, angle = 2.48 degrees 
    27356  
    27357 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27358 (#25) coordinates: 
    27359 Matrix rotation and translation 
    27360 -0.53711118 -0.84343043 -0.01169252 402.34326612 
    27361 0.84313715 -0.53723416 0.02234320 56.71029643 
    27362 -0.02512655 0.00214238 0.99968199 -108.76329695 
    27363 Axis -0.01197623 0.00796449 0.99989656 
    27364 Axis point 184.71605435 138.78965469 0.00000000 
    27365 Rotation angle (degrees) 122.50217823 
    27366 Shift along axis -113.11893456 
    27367  
    27368 
    27369 > view matrix models
    27370 > #24,-0.97307,0.12581,-0.19317,613.1,0.12312,-0.42483,-0.89686,394.2,-0.1949,-0.89649,0.3979,373.89,#26,-0.82833,-0.40846,-0.38344,439.82,0.54267,-0.75505,-0.36799,95.783,-0.1392,-0.5129,0.84709,218.11,#27,0.22854,0.79804,-0.55758,425.48,0.90671,-0.38302,-0.17657,116.65,-0.35448,-0.46521,-0.81113,250.9,#28,-0.37766,0.021979,-0.92568,480.58,-0.32525,0.93286,0.15485,164.56,0.86694,0.35956,-0.34516,240.38,#29,0.71479,0.68091,-0.1595,358.67,-0.11976,0.34388,0.93134,143.06,0.68901,-0.64661,0.32735,238.63,#30,0.34705,0.038416,0.93706,405.89,0.87078,0.35786,-0.33717,128.09,-0.34829,0.93299,0.090743,273.03,#31,-0.10615,-0.7955,-0.59659,627.45,0.33279,0.53696,-0.77519,-89.595,0.93701,-0.28082,0.20773,490.55,#32,-0.27582,0.58278,0.76439,381.09,0.43485,0.78486,-0.44148,69.757,-0.85722,0.21063,-0.4699,180.2,#33,-0.38425,0.89121,0.24104,377.02,-0.62905,-0.44383,0.63821,124.33,0.67576,0.093606,0.73116,199.29,#34,-0.78747,0.31013,-0.53264,412.79,0.1067,0.91973,0.37776,147.92,0.60705,0.24064,-0.75736,202.35,#35,0.77629,-0.10714,0.62121,378.19,-0.62647,-0.021597,0.77914,124.79,-0.07006,-0.99401,-0.083884,198.59
    27371 
    27372 > fitmap #24 inMap #25
    27373 
    27374 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27375 points 
    27376 correlation = 0.7374, correlation about mean = 0.2514, overlap = 17.37 
    27377 steps = 92, shift = 7.44, angle = 7.78 degrees 
    27378  
    27379 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27380 (#25) coordinates: 
    27381 Matrix rotation and translation 
    27382 -0.53702676 -0.84348427 -0.01168654 402.33384056 
    27383 0.84319403 -0.53714987 0.02222297 56.72606806 
    27384 -0.02502215 0.00208031 0.99968474 -108.76693197 
    27385 Axis -0.01194099 0.00790562 0.99989745 
    27386 Axis point 184.70886211 138.80604607 0.00000000 
    27387 Rotation angle (degrees) 122.49635404 
    27388 Shift along axis -113.11158615 
    27389  
    27390 
    27391 > fitmap #24 inMap #25
    27392 
    27393 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27394 points 
    27395 correlation = 0.7374, correlation about mean = 0.2514, overlap = 17.37 
    27396 steps = 92, shift = 7.44, angle = 7.78 degrees 
    27397  
    27398 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27399 (#25) coordinates: 
    27400 Matrix rotation and translation 
    27401 -0.53702676 -0.84348427 -0.01168654 402.33384056 
    27402 0.84319403 -0.53714987 0.02222297 56.72606806 
    27403 -0.02502215 0.00208031 0.99968474 -108.76693197 
    27404 Axis -0.01194099 0.00790562 0.99989745 
    27405 Axis point 184.70886211 138.80604607 0.00000000 
    27406 Rotation angle (degrees) 122.49635404 
    27407 Shift along axis -113.11158615 
    27408  
    27409 
    27410 > fitmap #24 inMap #25
    27411 
    27412 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27413 points 
    27414 correlation = 0.7374, correlation about mean = 0.2514, overlap = 17.37 
    27415 steps = 92, shift = 7.44, angle = 7.78 degrees 
    27416  
    27417 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27418 (#25) coordinates: 
    27419 Matrix rotation and translation 
    27420 -0.53702676 -0.84348427 -0.01168654 402.33384056 
    27421 0.84319403 -0.53714987 0.02222297 56.72606806 
    27422 -0.02502215 0.00208031 0.99968474 -108.76693197 
    27423 Axis -0.01194099 0.00790562 0.99989745 
    27424 Axis point 184.70886211 138.80604607 0.00000000 
    27425 Rotation angle (degrees) 122.49635404 
    27426 Shift along axis -113.11158615 
    27427  
    27428 
    27429 > fitmap #24 inMap #25
    27430 
    27431 Fit map postprocess_20231221.mrc in map emd_3720_2017_leaf.map using 18014
    27432 points 
    27433 correlation = 0.7374, correlation about mean = 0.2514, overlap = 17.37 
    27434 steps = 92, shift = 7.44, angle = 7.78 degrees 
    27435  
    27436 Position of postprocess_20231221.mrc (#24) relative to emd_3720_2017_leaf.map
    27437 (#25) coordinates: 
    27438 Matrix rotation and translation 
    27439 -0.53702676 -0.84348427 -0.01168654 402.33384056 
    27440 0.84319403 -0.53714987 0.02222297 56.72606806 
    27441 -0.02502215 0.00208031 0.99968474 -108.76693197 
    27442 Axis -0.01194099 0.00790562 0.99989745 
    27443 Axis point 184.70886211 138.80604607 0.00000000 
    27444 Rotation angle (degrees) 122.49635404 
    27445 Shift along axis -113.11158615 
    27446  
    27447 
    27448 > select subtract #24
    27449 
    27450 40824 atoms, 41582 bonds, 1 pseudobond, 5145 residues, 11 models selected 
    27451 
    27452 > select subtract #26
    27453 
    27454 31014 atoms, 31550 bonds, 1 pseudobond, 3912 residues, 10 models selected 
    27455 
    27456 > select subtract #27
    27457 
    27458 23513 atoms, 23931 bonds, 1 pseudobond, 2959 residues, 9 models selected 
    27459 
    27460 > select subtract #28
    27461 
    27462 22056 atoms, 22448 bonds, 1 pseudobond, 2778 residues, 8 models selected 
    27463 
    27464 > select subtract #29
    27465 
    27466 20599 atoms, 20965 bonds, 1 pseudobond, 2597 residues, 7 models selected 
    27467 
    27468 > select subtract #30
    27469 
    27470 13385 atoms, 13592 bonds, 1 pseudobond, 1692 residues, 6 models selected 
    27471 
    27472 > select subtract #31
    27473 
    27474 11923 atoms, 12111 bonds, 1 pseudobond, 1513 residues, 5 models selected 
    27475 
    27476 > select subtract #32
    27477 
    27478 5250 atoms, 5325 bonds, 660 residues, 3 models selected 
    27479 
    27480 > select subtract #33
    27481 
    27482 3830 atoms, 3884 bonds, 483 residues, 2 models selected 
    27483 
    27484 > select subtract #34
    27485 
    27486 1463 atoms, 1486 bonds, 185 residues, 1 model selected 
    27487 
    27488 > select subtract #35
    27489 
    27490 Nothing selected 
    27491 
    27492 > fitmap #24 inMap #19
    27493 
    27494 Fit map postprocess_20231221.mrc in map COPI_golph_linkage3_postprocess.mrc
    27495 using 18014 points 
    27496 correlation = 0.8382, correlation about mean = 0.1145, overlap = 82.66 
    27497 steps = 48, shift = 1.49, angle = 2.19 degrees 
    27498  
    27499 Position of postprocess_20231221.mrc (#24) relative to
    27500 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    27501 Matrix rotation and translation 
    27502 -0.97203359 0.23353650 0.02472742 476.65176931 
    27503 -0.21547145 -0.84502445 -0.48939328 502.69321473 
    27504 -0.09339591 -0.48103475 0.87171257 268.47354093 
    27505 Axis 0.01800007 0.25437826 -0.96693728 
    27506 Axis point 273.32590072 257.51648836 0.00000000 
    27507 Rotation angle (degrees) 166.57451956 
    27508 Shift along axis -123.14308766 
    27509  
    27510 
    27511 > fitmap #24 inMap #19
    27512 
    27513 Fit map postprocess_20231221.mrc in map COPI_golph_linkage3_postprocess.mrc
    27514 using 18014 points 
    27515 correlation = 0.8382, correlation about mean = 0.1144, overlap = 82.66 
    27516 steps = 28, shift = 0.02, angle = 0.00798 degrees 
    27517  
    27518 Position of postprocess_20231221.mrc (#24) relative to
    27519 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    27520 Matrix rotation and translation 
    27521 -0.97202596 0.23357940 0.02462192 476.67328677 
    27522 -0.21546556 -0.84506605 -0.48932404 502.68220492 
    27523 -0.09348887 -0.48094083 0.87175443 268.44685604 
    27524 Axis 0.01805192 0.25433313 -0.96694818 
    27525 Axis point 273.34423552 257.49733342 0.00000000 
    27526 Rotation angle (degrees) 166.57354635 
    27527 Shift along axis -123.12059435 
    27528  
    27529 
    27530 > fitmap #25 inMap #19
    27531 
    27532 Fit map emd_3720_2017_leaf.map in map COPI_golph_linkage3_postprocess.mrc
    27533 using 65799 points 
    27534 correlation = 0.9188, correlation about mean = 0.1408, overlap = 8478 
    27535 steps = 48, shift = 0.0726, angle = 0.0389 degrees 
    27536  
    27537 Position of emd_3720_2017_leaf.map (#25) relative to
    27538 COPI_golph_linkage3_postprocess.mrc (#19) coordinates: 
    27539 Matrix rotation and translation 
    27540 0.31545792 -0.94500968 0.08627300 402.21544873 
    27541 0.84037390 0.23598354 -0.48793802 103.41959547 
    27542 0.44074713 0.22642549 0.86860433 169.26232870 
    27543 Axis 0.36532989 -0.18128025 0.91305615 
    27544 Axis point 62.41634809 271.10376062 0.00000000 
    27545 Rotation angle (degrees) 77.87630625 
    27546 Shift along axis 282.73940752 
    27547  
    27548 
    27549 > show #26 models
    27550 
    27551 > hide #!25 models
    27552 
    27553 > show #27 models
    27554 
    27555 > show #28 models
    27556 
    27557 > show #29 models
    27558 
    27559 > show #30 models
    27560 
    27561 > show #31 models
    27562 
    27563 > show #!32 models
    27564 
    27565 > show #33 models
    27566 
    27567 > show #34 models
    27568 
    27569 > show #35 models
    27570 
    27571 > fitmap #26 inMap #24
    27572 
    27573 Fit molecule copy of CopA_F8WHL2.pdb (#26) to map postprocess_20231221.mrc
    27574 (#24) using 9810 atoms 
    27575 average map value = 0.002302, steps = 180 
    27576 shifted from previous position = 34.2 
    27577 rotated from previous position = 9.99 degrees 
    27578 atoms outside contour = 8643, contour level = 0.0037635 
    27579  
    27580 Position of copy of CopA_F8WHL2.pdb (#26) relative to postprocess_20231221.mrc
    27581 (#24) coordinates: 
    27582 Matrix rotation and translation 
    27583 0.86507267 0.48271071 0.13652705 179.72237680 
    27584 -0.27280766 0.68108410 -0.67948541 229.59514250 
    27585 -0.42098128 0.55055863 0.72087442 210.15298064 
    27586 Axis 0.79487947 0.36027322 -0.48823133 
    27587 Axis point 0.00000000 -284.74933541 406.34125041 
    27588 Rotation angle (degrees) 50.69002383 
    27589 Shift along axis 122.97133949 
    27590  
    27591 
    27592 > fitmap #27 inMap #24
    27593 
    27594 Fit molecule copy of CopB_Q9JIF7.pdb (#27) to map postprocess_20231221.mrc
    27595 (#24) using 7501 atoms 
    27596 average map value = 0.002923, steps = 140 
    27597 shifted from previous position = 6.91 
    27598 rotated from previous position = 7.67 degrees 
    27599 atoms outside contour = 5721, contour level = 0.0037635 
    27600  
    27601 Position of copy of CopB_Q9JIF7.pdb (#27) relative to postprocess_20231221.mrc
    27602 (#24) coordinates: 
    27603 Matrix rotation and translation 
    27604 -0.04160222 -0.73260006 0.67938679 172.38172893 
    27605 -0.03782789 0.68064286 0.73163813 204.57811403 
    27606 -0.99841790 0.00473800 -0.05602897 236.25128780 
    27607 Axis -0.37161686 0.85775265 0.35519192 
    27608 Axis point 209.22857536 0.00000000 -39.79684346 
    27609 Rotation angle (degrees) 102.03412099 
    27610 Shift along axis 195.33201108 
    27611  
    27612 
    27613 > fitmap #28 inMap #24
    27614 
    27615 Fit molecule copy of hArf1_P84078 (#28) to map postprocess_20231221.mrc (#24)
    27616 using 1457 atoms 
    27617 average map value = 0.002597, steps = 112 
    27618 shifted from previous position = 12.3 
    27619 rotated from previous position = 22.5 degrees 
    27620 atoms outside contour = 1394, contour level = 0.0037635 
    27621  
    27622 Position of copy of hArf1_P84078 (#28) relative to postprocess_20231221.mrc
    27623 (#24) coordinates: 
    27624 Matrix rotation and translation 
    27625 -0.01934794 -0.31091515 0.95024071 127.82557022 
    27626 -0.57176123 -0.77623084 -0.26562147 202.08556806 
    27627 0.82019189 -0.54845003 -0.16275076 178.70102583 
    27628 Axis -0.69639109 0.32021108 -0.64226499 
    27629 Axis point 0.00000000 137.01484769 12.23739255 
    27630 Rotation angle (degrees) 168.28361402 
    27631 Shift along axis -139.07996225 
    27632  
    27633 
    27634 > fitmap #29 inMap #24
    27635 
    27636 Fit molecule copy of hArf1_P84078 (#29) to map postprocess_20231221.mrc (#24)
    27637 using 1457 atoms 
    27638 average map value = 0.003766, steps = 72 
    27639 shifted from previous position = 8.51 
    27640 rotated from previous position = 7.54 degrees 
    27641 atoms outside contour = 800, contour level = 0.0037635 
    27642  
    27643 Position of copy of hArf1_P84078 (#29) relative to postprocess_20231221.mrc
    27644 (#24) coordinates: 
    27645 Matrix rotation and translation 
    27646 -0.84474773 -0.49401404 0.20579450 243.02037754 
    27647 -0.47618409 0.51835648 -0.71032053 195.90856907 
    27648 0.24423341 -0.69803773 -0.67312209 220.58528669 
    27649 Axis 0.27841319 -0.87129151 0.40414996 
    27650 Axis point 151.37874481 0.00000000 157.29169422 
    27651 Rotation angle (degrees) 178.73603375 
    27652 Shift along axis -13.88386023 
    27653  
    27654 
    27655 > fitmap #30 inMap #24
    27656 
    27657 Fit molecule copy of CopBprime_O55029.pdb (#30) to map
    27658 postprocess_20231221.mrc (#24) using 7214 atoms 
    27659 average map value = 0.00312, steps = 76 
    27660 shifted from previous position = 4.92 
    27661 rotated from previous position = 7.62 degrees 
    27662 atoms outside contour = 4513, contour level = 0.0037635 
    27663  
    27664 Position of copy of CopBprime_O55029.pdb (#30) relative to
    27665 postprocess_20231221.mrc (#24) coordinates: 
    27666 Matrix rotation and translation 
    27667 -0.16284683 -0.17501121 -0.97100565 188.50517873 
    27668 -0.01397505 -0.98363475 0.17963119 177.42546588 
    27669 -0.98655238 0.04282222 0.15773601 238.57597049 
    27670 Axis -0.64570587 0.07337687 0.76005247 
    27671 Axis point 189.58052565 85.42232155 0.00000000 
    27672 Rotation angle (degrees) 173.91881574 
    27673 Shift along axis 72.63028077 
    27674  
    27675 
    27676 > fitmap #31 inMap #24
    27677 
    27678 Fit molecule copy of CopD_Q5XJY5 (#31) to map postprocess_20231221.mrc (#24)
    27679 using 1462 atoms 
    27680 average map value = 0.003202, steps = 100 
    27681 shifted from previous position = 7.75 
    27682 rotated from previous position = 7.61 degrees 
    27683 atoms outside contour = 960, contour level = 0.0037635 
    27684  
    27685 Position of copy of CopD_Q5XJY5 (#31) relative to postprocess_20231221.mrc
    27686 (#24) coordinates: 
    27687 Matrix rotation and translation 
    27688 -0.03867793 0.89478393 0.44482103 -96.24491555 
    27689 -0.99472967 -0.07677989 0.06795391 102.81750945 
    27690 0.09495737 -0.43984836 0.89303781 477.62018193 
    27691 Axis -0.25548593 0.17602371 -0.95065377 
    27692 Axis point -29.87862257 190.33459261 0.00000000 
    27693 Rotation angle (degrees) 96.38507173 
    27694 Shift along axis -411.36388547 
    27695  
    27696 
    27697 > fitmap #44 inMap #24
    27698 
    27699 Fit molecule copy of CopG_Q9QZE5 (#44) to map postprocess_20231221.mrc (#24)
    27700 using 6673 atoms 
    27701 average map value = 0.002327, steps = 164 
    27702 shifted from previous position = 38.1 
    27703 rotated from previous position = 44.4 degrees 
    27704 atoms outside contour = 6645, contour level = 0.0037635 
    27705  
    27706 Position of copy of CopG_Q9QZE5 (#44) relative to postprocess_20231221.mrc
    27707 (#24) coordinates: 
    27708 Matrix rotation and translation 
    27709 -0.61216261 0.43919834 -0.65754218 285.46162094 
    27710 0.78865790 0.27893520 -0.54791771 122.96214473 
    27711 -0.05723289 -0.85399059 -0.51713095 227.88169761 
    27712 Axis -0.40322559 -0.79085760 0.46038394 
    27713 Axis point 76.81675526 0.00000000 179.91059694 
    27714 Rotation angle (degrees) 157.69539113 
    27715 Shift along axis -107.43790246 
    27716  
    27717 
    27718 > fitmap #32 inMap #24
    27719 
    27720 Fit molecule copy of CopG_Q9QZE5 (#32) to map postprocess_20231221.mrc (#24)
    27721 using 6673 atoms 
    27722 average map value = 0.002304, steps = 104 
    27723 shifted from previous position = 3.4 
    27724 rotated from previous position = 5.66 degrees 
    27725 atoms outside contour = 5586, contour level = 0.0037635 
    27726  
    27727 Position of copy of CopG_Q9QZE5 (#32) relative to postprocess_20231221.mrc
    27728 (#24) coordinates: 
    27729 Matrix rotation and translation 
    27730 0.44817827 -0.52631563 -0.72258431 218.97399207 
    27731 0.39316596 -0.60988406 0.68808572 281.99701496 
    27732 -0.80284293 -0.59248062 -0.06640739 239.02861561 
    27733 Axis -0.81124288 0.05084409 0.58249453 
    27734 Axis point -0.00000000 224.12582577 112.77046133 
    27735 Rotation angle (degrees) 127.88340258 
    27736 Shift along axis -24.07034965 
    27737  
    27738 
    27739 > fitmap #32 inMap #24
    27740 
    27741 Fit molecule copy of CopG_Q9QZE5 (#32) to map postprocess_20231221.mrc (#24)
    27742 using 6673 atoms 
    27743 average map value = 0.002303, steps = 48 
    27744 shifted from previous position = 0.0255 
    27745 rotated from previous position = 0.0915 degrees 
    27746 atoms outside contour = 5582, contour level = 0.0037635 
    27747  
    27748 Position of copy of CopG_Q9QZE5 (#32) relative to postprocess_20231221.mrc
    27749 (#24) coordinates: 
    27750 Matrix rotation and translation 
    27751 0.44809247 -0.52626317 -0.72267572 218.97081694 
    27752 0.39194556 -0.61089371 0.68788629 281.98590138 
    27753 -0.80348728 -0.59148621 -0.06747036 238.97648505 
    27754 Axis -0.81135093 0.05124898 0.58230852 
    27755 Axis point -0.00000000 224.01146973 112.86762893 
    27756 Rotation angle (degrees) 127.96178856 
    27757 Shift along axis -24.05264225 
    27758  
    27759 
    27760 > fitmap #32 inMap #24
    27761 
    27762 Fit molecule copy of CopG_Q9QZE5 (#32) to map postprocess_20231221.mrc (#24)
    27763 using 6673 atoms 
    27764 average map value = 0.002304, steps = 80 
    27765 shifted from previous position = 0.0367 
    27766 rotated from previous position = 0.0701 degrees 
    27767 atoms outside contour = 5583, contour level = 0.0037635 
    27768  
    27769 Position of copy of CopG_Q9QZE5 (#32) relative to postprocess_20231221.mrc
    27770 (#24) coordinates: 
    27771 Matrix rotation and translation 
    27772 0.44780713 -0.52609803 -0.72297277 218.96331223 
    27773 0.39304791 -0.61043876 0.68766115 282.00765981 
    27774 -0.80310778 -0.59210250 -0.06657710 238.98972733 
    27775 Axis -0.81117269 0.05079323 0.58259670 
    27776 Axis point 0.00000000 224.05099040 112.83280987 
    27777 Rotation angle (degrees) 127.92317871 
    27778 Shift along axis -24.05835120 
    27779  
    27780 
    27781 > select add #32
    27782 
    27783 6673 atoms, 6786 bonds, 1 pseudobond, 853 residues, 2 models selected 
    27784 
    27785 > view matrix models
    27786 > #32,-0.41942,0.54138,0.7287,377.77,0.2351,0.84011,-0.48883,67.254,-0.87682,-0.033707,-0.47964,184.63
    27787 
    27788 > ui mousemode right "translate selected models"
    27789 
    27790 > view matrix models
    27791 > #32,-0.41942,0.54138,0.7287,372.72,0.2351,0.84011,-0.48883,69.446,-0.87682,-0.033707,-0.47964,189.37
    27792 
    27793 > fitmap #32 inMap #24
    27794 
    27795 Fit molecule copy of CopG_Q9QZE5 (#32) to map postprocess_20231221.mrc (#24)
    27796 using 6673 atoms 
    27797 average map value = 0.002906, steps = 92 
    27798 shifted from previous position = 6.32 
    27799 rotated from previous position = 14.1 degrees 
    27800 atoms outside contour = 5059, contour level = 0.0037635 
    27801  
    27802 Position of copy of CopG_Q9QZE5 (#32) relative to postprocess_20231221.mrc
    27803 (#24) coordinates: 
    27804 Matrix rotation and translation 
    27805 0.47154726 -0.63850037 -0.60824374 228.85343617 
    27806 0.47824571 -0.39433582 0.78471670 278.61322647 
    27807 -0.74089420 -0.66092097 0.11941209 254.29113821 
    27808 Axis -0.78929614 0.07242513 0.60972634 
    27809 Axis point 0.00000000 256.41512245 100.06668007 
    27810 Rotation angle (degrees) 113.68376066 
    27811 Shift along axis -5.40652946 
    27812  
    27813 
    27814 > select add #27
    27815 
    27816 14174 atoms, 14405 bonds, 1 pseudobond, 1806 residues, 3 models selected 
    27817 
    27818 > view matrix models
    27819 > #27,0.20363,0.781,-0.5904,416.85,0.85589,-0.43481,-0.27999,112.99,-0.47538,-0.4483,-0.75699,248.91,#32,-0.29559,0.70066,0.64939,365.21,0.41175,0.70682,-0.5752,63.578,-0.86202,0.097362,-0.49743,186.55
    27820 
    27821 > select subtract #32
    27822 
    27823 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    27824 
    27825 > fitmap #32 inMap #24
    27826 
    27827 Fit molecule copy of CopG_Q9QZE5 (#32) to map postprocess_20231221.mrc (#24)
    27828 using 6673 atoms 
    27829 average map value = 0.002906, steps = 88 
    27830 shifted from previous position = 3.25 
    27831 rotated from previous position = 0.0132 degrees 
    27832 atoms outside contour = 5051, contour level = 0.0037635 
    27833  
    27834 Position of copy of CopG_Q9QZE5 (#32) relative to postprocess_20231221.mrc
    27835 (#24) coordinates: 
    27836 Matrix rotation and translation 
    27837 0.47154883 -0.63865736 -0.60807769 228.89663626 
    27838 0.47818092 -0.39418923 0.78482983 278.60638802 
    27839 -0.74093502 -0.66085674 0.11951430 254.30830924 
    27840 Axis -0.78927551 0.07253373 0.60974013 
    27841 Axis point 0.00000000 256.45192148 100.07902507 
    27842 Rotation angle (degrees) 113.67592865 
    27843 Shift along axis -5.39216813 
    27844  
    27845 
    27846 > view matrix models
    27847 > #27,0.20363,0.781,-0.5904,418.54,0.85589,-0.43481,-0.27999,112.19,-0.47538,-0.4483,-0.75699,248.61
    27848 
    27849 > ui mousemode right "rotate selected models"
    27850 
    27851 > view matrix models
    27852 > #27,0.2004,0.78409,-0.5874,418.53,0.85683,-0.43099,-0.28299,112.19,-0.47506,-0.44659,-0.7582,248.61
    27853 
    27854 > view matrix models
    27855 > #27,0.13564,0.76181,-0.63344,419.17,0.84703,-0.42082,-0.32473,112.45,-0.51394,-0.4925,-0.70236,248.58
    27856 
    27857 > fitmap #27 inMap #24
    27858 
    27859 Fit molecule copy of CopB_Q9JIF7.pdb (#27) to map postprocess_20231221.mrc
    27860 (#24) using 7501 atoms 
    27861 average map value = 0.002923, steps = 96 
    27862 shifted from previous position = 2.49 
    27863 rotated from previous position = 5.09 degrees 
    27864 atoms outside contour = 5726, contour level = 0.0037635 
    27865  
    27866 Position of copy of CopB_Q9JIF7.pdb (#27) relative to postprocess_20231221.mrc
    27867 (#24) coordinates: 
    27868 Matrix rotation and translation 
    27869 -0.04206488 -0.73251848 0.67944626 172.36870294 
    27870 -0.03855814 0.68073178 0.73151727 204.56621725 
    27871 -0.99837058 0.00457300 -0.05687945 236.23830332 
    27872 Axis -0.37168909 0.85787350 0.35482430 
    27873 Axis point 209.20227656 0.00000000 -39.64656356 
    27874 Rotation angle (degrees) 102.06998275 
    27875 Shift along axis 195.24745974 
    27876  
    27877 
    27878 > select subtract #27
    27879 
    27880 Nothing selected 
    27881 
    27882 > fitmap #45 inMap #24
    27883 
    27884 Fit molecule copy of CopZ1_P61924.pdb (#45) to map postprocess_20231221.mrc
    27885 (#24) using 1420 atoms 
    27886 average map value = 0.002959, steps = 124 
    27887 shifted from previous position = 17.3 
    27888 rotated from previous position = 17.7 degrees 
    27889 atoms outside contour = 1345, contour level = 0.0037635 
    27890  
    27891 Position of copy of CopZ1_P61924.pdb (#45) relative to
    27892 postprocess_20231221.mrc (#24) coordinates: 
    27893 Matrix rotation and translation 
    27894 -0.31392983 0.72637183 -0.61141803 307.16343514 
    27895 -0.34921927 -0.68716881 -0.63705958 155.19780204 
    27896 -0.88288954 0.01352695 0.46938583 206.76789307 
    27897 Axis 0.50589018 0.21109378 -0.83636986 
    27898 Axis point 249.20040984 38.50227007 0.00000000 
    27899 Rotation angle (degrees) 139.98324224 
    27900 Shift along axis 15.21782070 
    27901  
    27902 
    27903 > fitmap #46 inMap #24
    27904 
    27905 Fit molecule copy of Golph3_ Q9CRA5.pdb (#46) to map postprocess_20231221.mrc
    27906 (#24) using 2367 atoms 
    27907 average map value = 0.002774, steps = 124 
    27908 shifted from previous position = 31.5 
    27909 rotated from previous position = 41.2 degrees 
    27910 atoms outside contour = 2316, contour level = 0.0037635 
    27911  
    27912 Position of copy of Golph3_ Q9CRA5.pdb (#46) relative to
    27913 postprocess_20231221.mrc (#24) coordinates: 
    27914 Matrix rotation and translation 
    27915 0.36575003 0.51539000 -0.77498389 313.59398497 
    27916 0.84259247 0.17030390 0.51091533 160.67810942 
    27917 0.39530344 -0.83986290 -0.37197509 212.29582825 
    27918 Axis -0.74343976 -0.64410139 0.18008531 
    27919 Axis point 0.00000000 59.12484614 157.71167950 
    27920 Rotation angle (degrees) 114.70589747 
    27921 Shift along axis -298.39986990 
    27922  
    27923 
    27924 > fitmap #34 inMap #24
    27925 
    27926 Fit molecule copy of Golph3_ Q9CRA5.pdb (#34) to map postprocess_20231221.mrc
    27927 (#24) using 2367 atoms 
    27928 average map value = 0.002794, steps = 104 
    27929 shifted from previous position = 8.54 
    27930 rotated from previous position = 26.1 degrees 
    27931 atoms outside contour = 2100, contour level = 0.0037635 
    27932  
    27933 Position of copy of Golph3_ Q9CRA5.pdb (#34) relative to
    27934 postprocess_20231221.mrc (#24) coordinates: 
    27935 Matrix rotation and translation 
    27936 0.89576384 -0.28618485 0.34015492 192.67335380 
    27937 -0.44437077 -0.59697332 0.66795020 233.15319187 
    27938 0.01190618 -0.74948054 -0.66191930 176.70751843 
    27939 Axis -0.96851040 0.22428772 -0.10808620 
    27940 Axis point 0.00000000 174.85960953 17.49295541 
    27941 Rotation angle (degrees) 132.96601105 
    27942 Shift along axis -153.41239267 
    27943  
    27944 
    27945 > fitmap #33 inMap #24
    27946 
    27947 Fit molecule copy of CopZ1_P61924.pdb (#33) to map postprocess_20231221.mrc
    27948 (#24) using 1420 atoms 
    27949 average map value = 0.002877, steps = 96 
    27950 shifted from previous position = 4.46 
    27951 rotated from previous position = 7.12 degrees 
    27952 atoms outside contour = 1168, contour level = 0.0037635 
    27953  
    27954 Position of copy of CopZ1_P61924.pdb (#33) relative to
    27955 postprocess_20231221.mrc (#24) coordinates: 
    27956 Matrix rotation and translation 
    27957 0.19308292 -0.94842799 -0.25140277 223.58566804 
    27958 -0.36413319 0.16866212 -0.91594766 236.56681043 
    27959 0.91111251 0.26839794 -0.31278833 203.43218272 
    27960 Axis 0.67315004 -0.66074228 0.33209737 
    27961 Axis point -0.00000000 147.00955006 169.39527246 
    27962 Rotation angle (degrees) 118.39331975 
    27963 Shift along axis 61.75630170 
    27964  
    27965 
    27966 > fitmap #35 inMap #24
    27967 
    27968 Fit molecule copy of CopZ2_Q9CTG7.pdb (#35) to map postprocess_20231221.mrc
    27969 (#24) using 1463 atoms 
    27970 average map value = 0.00336, steps = 132 
    27971 shifted from previous position = 11.2 
    27972 rotated from previous position = 26.5 degrees 
    27973 atoms outside contour = 958, contour level = 0.0037635 
    27974  
    27975 Position of copy of CopZ2_Q9CTG7.pdb (#35) relative to
    27976 postprocess_20231221.mrc (#24) coordinates: 
    27977 Matrix rotation and translation 
    27978 -0.97216939 0.18672263 -0.14149687 227.77682409 
    27979 0.23376735 0.81303421 -0.53322437 243.08158768 
    27980 0.01547674 -0.55146175 -0.83405662 215.39437003 
    27981 Axis -0.11060779 -0.95202821 0.28532122 
    27982 Axis point 93.88911333 0.00000000 148.59418013 
    27983 Rotation angle (degrees) 175.27107242 
    27984 Shift along axis -195.15783710 
    27985  
    27986 
    27987 > fitmap #26 inMap #24
    27988 
    27989 Fit molecule copy of CopA_F8WHL2.pdb (#26) to map postprocess_20231221.mrc
    27990 (#24) using 9810 atoms 
    27991 average map value = 0.002302, steps = 180 
    27992 shifted from previous position = 34.2 
    27993 rotated from previous position = 9.99 degrees 
    27994 atoms outside contour = 8643, contour level = 0.0037635 
    27995  
    27996 Position of copy of CopA_F8WHL2.pdb (#26) relative to postprocess_20231221.mrc
    27997 (#24) coordinates: 
    27998 Matrix rotation and translation 
    27999 0.86507267 0.48271071 0.13652705 179.72237680 
    28000 -0.27280766 0.68108410 -0.67948541 229.59514250 
    28001 -0.42098128 0.55055863 0.72087442 210.15298064 
    28002 Axis 0.79487947 0.36027322 -0.48823133 
    28003 Axis point -0.00000000 -284.74933541 406.34125041 
    28004 Rotation angle (degrees) 50.69002383 
    28005 Shift along axis 122.97133949 
    28006  
    28007 
    28008 > hide #!2 models
    28009 
    28010 > show #!1 models
    28011 
    28012 > show #3 models
    28013 
    28014 > select add #3
    28015 
    28016 9810 atoms, 10032 bonds, 1233 residues, 1 model selected 
    28017 
    28018 > select subtract #3
    28019 
    28020 Nothing selected 
    28021 
    28022 > select add #26
    28023 
    28024 9810 atoms, 10032 bonds, 1233 residues, 1 model selected 
    28025 
    28026 > view matrix models
    28027 > #26,-0.92759,-0.099393,-0.36013,435.15,0.2534,-0.87571,-0.41101,89.291,-0.27452,-0.4725,0.83748,214.4
    28028 
    28029 > ui mousemode right "translate selected models"
    28030 
    28031 > view matrix models
    28032 > #26,-0.92759,-0.099393,-0.36013,432.49,0.2534,-0.87571,-0.41101,84.793,-0.27452,-0.4725,0.83748,214.71
    28033 
    28034 > fitmap #26 inMap #24
    28035 
    28036 Fit molecule copy of CopA_F8WHL2.pdb (#26) to map postprocess_20231221.mrc
    28037 (#24) using 9810 atoms 
    28038 average map value = 0.001845, steps = 156 
    28039 shifted from previous position = 5.27 
    28040 rotated from previous position = 19.5 degrees 
    28041 atoms outside contour = 8454, contour level = 0.0037635 
    28042  
    28043 Position of copy of CopA_F8WHL2.pdb (#26) relative to postprocess_20231221.mrc
    28044 (#24) coordinates: 
    28045 Matrix rotation and translation 
    28046 0.90002629 0.40434962 0.16264703 162.22591413 
    28047 -0.20990448 0.72920305 -0.65130868 244.63191611 
    28048 -0.38195913 0.55205460 0.74117672 239.12991736 
    28049 Axis 0.82608622 0.37386187 -0.42167387 
    28050 Axis point 0.00000000 -322.87328569 438.29947047 
    28051 Rotation angle (degrees) 46.74842327 
    28052 Shift along axis 124.63630121 
    28053  
    28054 
    28055 > select subtract #26
    28056 
    28057 Nothing selected 
    28058 
    28059 > show #7 models
    28060 
    28061 > hide #7 models
    28062 
    28063 > hide #3 models
    28064 
    28065 > hide #34 models
    28066 
    28067 > show #34 models
    28068 
    28069 > select add #34
    28070 
    28071 2367 atoms, 2398 bonds, 298 residues, 1 model selected 
    28072 
    28073 > view matrix models
    28074 > #34,-0.92224,0.3509,-0.16231,406.9,0.30997,0.922,0.23202,135.33,0.23107,0.16366,-0.95907,195.55
    28075 
    28076 > fitmap #34 inMap #24
    28077 
    28078 Fit molecule copy of Golph3_ Q9CRA5.pdb (#34) to map postprocess_20231221.mrc
    28079 (#24) using 2367 atoms 
    28080 average map value = 0.0031, steps = 88 
    28081 shifted from previous position = 4.7 
    28082 rotated from previous position = 25.9 degrees 
    28083 atoms outside contour = 1757, contour level = 0.0037635 
    28084  
    28085 Position of copy of Golph3_ Q9CRA5.pdb (#34) relative to
    28086 postprocess_20231221.mrc (#24) coordinates: 
    28087 Matrix rotation and translation 
    28088 0.66107851 -0.23538394 0.71243919 198.01764748 
    28089 -0.68861771 -0.56740177 0.45150955 233.20995810 
    28090 0.29796116 -0.78908151 -0.53718667 191.32717908 
    28091 Axis -0.89618830 0.29941402 -0.32741071 
    28092 Axis point 0.00000000 180.09123814 -4.24809178 
    28093 Rotation angle (degrees) 136.19956454 
    28094 Shift along axis -170.27733453 
    28095  
    28096 
    28097 > view matrix models
    28098 > #34,-0.76193,0.31034,-0.56847,404.93,0.17789,0.94425,0.27705,137.7,0.62275,0.10996,-0.77465,200.4
    28099 
    28100 > fitmap #34 inMap #24
    28101 
    28102 Fit molecule copy of Golph3_ Q9CRA5.pdb (#34) to map postprocess_20231221.mrc
    28103 (#24) using 2367 atoms 
    28104 average map value = 0.0031, steps = 52 
    28105 shifted from previous position = 1.73 
    28106 rotated from previous position = 0.0207 degrees 
    28107 atoms outside contour = 1754, contour level = 0.0037635 
    28108  
    28109 Position of copy of Golph3_ Q9CRA5.pdb (#34) relative to
    28110 postprocess_20231221.mrc (#24) coordinates: 
    28111 Matrix rotation and translation 
    28112 0.66094921 -0.23568640 0.71245916 198.02627283 
    28113 -0.68875214 -0.56745433 0.45123837 233.21711085 
    28114 0.29793729 -0.78895342 -0.53738801 191.32745999 
    28115 Axis -0.89615863 0.29953218 -0.32738385 
    28116 Axis point 0.00000000 180.10275225 -4.22827857 
    28117 Rotation angle (degrees) 136.21542708 
    28118 Shift along axis -170.24444387 
    28119  
    28120 
    28121 > fitmap #34 inMap #24
    28122 
    28123 Fit molecule copy of Golph3_ Q9CRA5.pdb (#34) to map postprocess_20231221.mrc
    28124 (#24) using 2367 atoms 
    28125 average map value = 0.0031, steps = 48 
    28126 shifted from previous position = 0.0567 
    28127 rotated from previous position = 0.0732 degrees 
    28128 atoms outside contour = 1752, contour level = 0.0037635 
    28129  
    28130 Position of copy of Golph3_ Q9CRA5.pdb (#34) relative to
    28131 postprocess_20231221.mrc (#24) coordinates: 
    28132 Matrix rotation and translation 
    28133 0.66030485 -0.23676096 0.71270032 198.05890200 
    28134 -0.68954027 -0.56712613 0.45044662 233.25118019 
    28135 0.29754280 -0.78886767 -0.53773235 191.34786805 
    28136 Axis -0.89597093 0.30014103 -0.32733997 
    28137 Axis point 0.00000000 180.20298211 -4.21611868 
    28138 Rotation angle (degrees) 136.24278023 
    28139 Shift along axis -170.08257377 
    28140  
    28141 
    28142 > hide #33 models
    28143 
    28144 > show #33 models
    28145 
    28146 > hide #33 models
    28147 
    28148 > fitmap #33 inMap #24
    28149 
    28150 Fit molecule copy of CopZ1_P61924.pdb (#33) to map postprocess_20231221.mrc
    28151 (#24) using 1420 atoms 
    28152 average map value = 0.002876, steps = 64 
    28153 shifted from previous position = 0.0956 
    28154 rotated from previous position = 0.924 degrees 
    28155 atoms outside contour = 1155, contour level = 0.0037635 
    28156  
    28157 Position of copy of CopZ1_P61924.pdb (#33) relative to
    28158 postprocess_20231221.mrc (#24) coordinates: 
    28159 Matrix rotation and translation 
    28160 0.20518131 -0.94864591 -0.24077288 223.66436577 
    28161 -0.36049158 0.15546011 -0.91971625 236.63008510 
    28162 0.90991563 0.27550518 -0.31008135 203.48243798 
    28163 Axis 0.67899746 -0.65369860 0.33412662 
    28164 Axis point 0.00000000 146.12330338 169.42808387 
    28165 Rotation angle (degrees) 118.34111838 
    28166 Shift along axis 65.17168050 
    28167  
    28168 
    28169 > fitmap #33 inMap #24
    28170 
    28171 Fit molecule copy of CopZ1_P61924.pdb (#33) to map postprocess_20231221.mrc
    28172 (#24) using 1420 atoms 
    28173 average map value = 0.002876, steps = 44 
    28174 shifted from previous position = 0.0477 
    28175 rotated from previous position = 0.598 degrees 
    28176 atoms outside contour = 1155, contour level = 0.0037635 
    28177  
    28178 Position of copy of CopZ1_P61924.pdb (#33) relative to
    28179 postprocess_20231221.mrc (#24) coordinates: 
    28180 Matrix rotation and translation 
    28181 0.21320758 -0.94850364 -0.23427202 223.69238124 
    28182 -0.35729733 0.14747903 -0.92227358 236.63459720 
    28183 0.90933006 0.28034049 -0.30745417 203.53949161 
    28184 Axis 0.68263920 -0.64914225 0.33558613 
    28185 Axis point 0.00000000 145.45071387 169.56450289 
    28186 Rotation angle (degrees) 118.25417022 
    28187 Shift along axis 67.39670363 
    28188  
    28189 
    28190 > show #33 models
    28191 
    28192 > hide #33 models
    28193 
    28194 > show #33 models
    28195 
    28196 > hide #33 models
    28197 
    28198 > hide #35 models
    28199 
    28200 > show #35 models
    28201 
    28202 > fitmap #47 inMap #24
    28203 
    28204 Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc
    28205 (#24) using 1463 atoms 
    28206 average map value = 0.002919, steps = 144 
    28207 shifted from previous position = 18.9 
    28208 rotated from previous position = 12.6 degrees 
    28209 atoms outside contour = 1339, contour level = 0.0037635 
    28210  
    28211 Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to
    28212 postprocess_20231221.mrc (#24) coordinates: 
    28213 Matrix rotation and translation 
    28214 0.98590061 0.16552841 0.02450138 307.81924023 
    28215 -0.16531855 0.94089384 0.29561554 159.17828977 
    28216 0.02587958 -0.29549808 0.95499273 207.30718464 
    28217 Axis -0.87261537 -0.00203453 -0.48840380 
    28218 Axis point 0.00000000 166.27214456 -502.67125256 
    28219 Rotation angle (degrees) 19.79782964 
    28220 Shift along axis -370.18127105 
    28221  
    28222 
    28223 > show #33 models
    28224 
    28225 > select add #33
    28226 
    28227 3787 atoms, 3839 bonds, 475 residues, 2 models selected 
    28228 
    28229 > select subtract #34
    28230 
    28231 1420 atoms, 1441 bonds, 177 residues, 1 model selected 
    28232 
    28233 > view matrix models
    28234 > #33,-0.39359,0.89806,0.19642,372.14,-0.55439,-0.40232,0.72855,119.05,0.73331,0.17786,0.65622,194
    28235 
    28236 > fitmap #33 inMap #24
    28237 
    28238 Fit molecule copy of CopZ1_P61924.pdb (#33) to map postprocess_20231221.mrc
    28239 (#24) using 1420 atoms 
    28240 average map value = 0.003163, steps = 92 
    28241 shifted from previous position = 8.33 
    28242 rotated from previous position = 16.8 degrees 
    28243 atoms outside contour = 1006, contour level = 0.0037635 
    28244  
    28245 Position of copy of CopZ1_P61924.pdb (#33) relative to
    28246 postprocess_20231221.mrc (#24) coordinates: 
    28247 Matrix rotation and translation 
    28248 0.16627480 -0.98606611 -0.00513179 236.52760618 
    28249 -0.15296672 -0.02065199 -0.98801553 241.60078095 
    28250 0.97414264 0.16506708 -0.15426920 209.38805539 
    28251 Axis 0.66766798 -0.56702805 0.48238849 
    28252 Axis point 0.00000000 156.51281645 152.82714666 
    28253 Rotation angle (degrees) 120.28643466 
    28254 Shift along axis 121.93387863 
    28255  
    28256 
    28257 > hide #34 models
    28258 
    28259 > select subtract #33
    28260 
    28261 Nothing selected 
    28262 
    28263 > hide #!32 models
    28264 
    28265 > hide #31 models
    28266 
    28267 > hide #30 models
    28268 
    28269 > hide #29 models
    28270 
    28271 > hide #28 models
    28272 
    28273 > hide #27 models
    28274 
    28275 > hide #26 models
    28276 
    28277 > hide #!24 models
    28278 
    28279 > hide #33 models
    28280 
    28281 > show #33 models
    28282 
    28283 > hide #33 models
    28284 
    28285 > show #33 models
    28286 
    28287 > show #!24 models
    28288 
    28289 > hide #35 models
    28290 
    28291 > hide #33 models
    28292 
    28293 > show #35 models
    28294 
    28295 > select add #35
    28296 
    28297 1463 atoms, 1486 bonds, 185 residues, 1 model selected 
    28298 
    28299 > view matrix models
    28300 > #35,0.97333,-0.01674,0.2288,371.38,-0.22779,0.047549,0.97255,117.35,-0.027159,-0.99873,0.042467,198.86
    28301 
    28302 > ui mousemode right "rotate selected models"
    28303 
    28304 > view matrix models
    28305 > #35,0.93449,0.019851,0.35544,371.99,-0.35592,0.031667,0.93398,117.66,0.0072849,-0.9993,0.036658,198.72
    28306 
    28307 > view matrix models
    28308 > #35,0.86128,-0.068194,0.50354,374.52,-0.50035,0.058928,0.86381,117.2,-0.088579,-0.99593,0.016632,198.82
    28309 
    28310 > ui mousemode right "translate selected models"
    28311 
    28312 > view matrix models
    28313 > #35,0.86128,-0.068194,0.50354,370.11,-0.50035,0.058928,0.86381,117.04,-0.088579,-0.99593,0.016632,198.08
    28314 
    28315 > fitmap #47 inMap #24
    28316 
    28317 Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc
    28318 (#24) using 1463 atoms 
    28319 average map value = 0.002919, steps = 56 
    28320 shifted from previous position = 0.0384 
    28321 rotated from previous position = 0.065 degrees 
    28322 atoms outside contour = 1343, contour level = 0.0037635 
    28323  
    28324 Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to
    28325 postprocess_20231221.mrc (#24) coordinates: 
    28326 Matrix rotation and translation 
    28327 0.98576158 0.16643347 0.02395818 307.78824771 
    28328 -0.16603286 0.94089140 0.29522269 159.19368056 
    28329 0.02659290 -0.29499703 0.95512803 207.32720157 
    28330 Axis -0.87127375 -0.00388933 -0.49078195 
    28331 Axis point 0.00000000 162.67625162 -501.78041708 
    28332 Rotation angle (degrees) 19.79835088 
    28333 Shift along axis -370.53942680 
    28334  
    28335 
    28336 > fitmap #47 inMap #24
    28337 
    28338 Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc
    28339 (#24) using 1463 atoms 
    28340 average map value = 0.002919, steps = 64 
    28341 shifted from previous position = 0.0488 
    28342 rotated from previous position = 0.102 degrees 
    28343 atoms outside contour = 1340, contour level = 0.0037635 
    28344  
    28345 Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to
    28346 postprocess_20231221.mrc (#24) coordinates: 
    28347 Matrix rotation and translation 
    28348 0.98595218 0.16512297 0.02515331 307.82261447 
    28349 -0.16513598 0.94106697 0.29516614 159.19782246 
    28350 0.02506776 -0.29517341 0.95511478 207.28684221 
    28351 Axis -0.87271466 0.00012646 -0.48823059 
    28352 Axis point 0.00000000 167.50093651 -506.06500811 
    28353 Rotation angle (degrees) 19.76847979 
    28354 Shift along axis -369.82495205 
    28355  
    28356 
    28357 > fitmap #47 inMap #24
    28358 
    28359 Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc
    28360 (#24) using 1463 atoms 
    28361 average map value = 0.002919, steps = 64 
    28362 shifted from previous position = 0.0295 
    28363 rotated from previous position = 0.055 degrees 
    28364 atoms outside contour = 1341, contour level = 0.0037635 
    28365  
    28366 Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to
    28367 postprocess_20231221.mrc (#24) coordinates: 
    28368 Matrix rotation and translation 
    28369 0.98589432 0.16555539 0.02457203 307.82081110 
    28370 -0.16536131 0.94084161 0.29575782 159.21269344 
    28371 0.02584592 -0.29564922 0.95494686 207.31580657 
    28372 Axis -0.87267505 -0.00187973 -0.48829779 
    28373 Axis point 0.00000000 166.46445678 -502.67182785 
    28374 Rotation angle (degrees) 19.80665676 
    28375 Shift along axis -370.15866765 
    28376  
    28377 
    28378 > fitmap #47 inMap #24
    28379 
    28380 Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc
    28381 (#24) using 1463 atoms 
    28382 average map value = 0.002919, steps = 64 
    28383 shifted from previous position = 0.0105 
    28384 rotated from previous position = 0.0177 degrees 
    28385 atoms outside contour = 1340, contour level = 0.0037635 
    28386  
    28387 Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to
    28388 postprocess_20231221.mrc (#24) coordinates: 
    28389 Matrix rotation and translation 
    28390 0.98590281 0.16550848 0.02454742 307.81864064 
    28391 -0.16531710 0.94094037 0.29546820 159.21440921 
    28392 0.02580484 -0.29536104 0.95503714 207.30437908 
    28393 Axis -0.87252894 -0.00185695 -0.48855890 
    28394 Axis point 0.00000000 166.20704661 -503.30600137 
    28395 Rotation angle (degrees) 19.78994934 
    28396 Shift along axis -370.15672507 
    28397  
    28398 
    28399 > view matrix models
    28400 > #35,0.86128,-0.068194,0.50354,368.76,-0.50035,0.058928,0.86381,116.92,-0.088579,-0.99593,0.016632,197.82
    28401 
    28402 > view matrix models
    28403 > #35,0.86128,-0.068194,0.50354,368.77,-0.50035,0.058928,0.86381,117.15,-0.088579,-0.99593,0.016632,199.22
    28404 
    28405 > fitmap #47 inMap #24
    28406 
    28407 Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc
    28408 (#24) using 1463 atoms 
    28409 average map value = 0.002919, steps = 48 
    28410 shifted from previous position = 0.0117 
    28411 rotated from previous position = 0.0284 degrees 
    28412 atoms outside contour = 1341, contour level = 0.0037635 
    28413  
    28414 Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to
    28415 postprocess_20231221.mrc (#24) coordinates: 
    28416 Matrix rotation and translation 
    28417 0.98595545 0.16514513 0.02487809 307.82426994 
    28418 -0.16506674 0.94097017 0.29551327 159.20472438 
    28419 0.02539304 -0.29546947 0.95501464 207.29997700 
    28420 Axis -0.87297040 -0.00076065 -0.48777259 
    28421 Axis point 0.00000000 167.63452220 -504.30181862 
    28422 Rotation angle (degrees) 19.78487695 
    28423 Shift along axis -369.95782203 
    28424  
    28425 
    28426 > fitmap #47 inMap #24
    28427 
    28428 Fit molecule copy of CopZ2_Q9CTG7.pdb (#47) to map postprocess_20231221.mrc
    28429 (#24) using 1463 atoms 
    28430 average map value = 0.002919, steps = 48 
    28431 shifted from previous position = 0.0395 
    28432 rotated from previous position = 0.0746 degrees 
    28433 atoms outside contour = 1339, contour level = 0.0037635 
    28434  
    28435 Position of copy of CopZ2_Q9CTG7.pdb (#47) relative to
    28436 postprocess_20231221.mrc (#24) coordinates: 
    28437 Matrix rotation and translation 
    28438 0.98600822 0.16470981 0.02566038 307.83169797 
    28439 -0.16490528 0.94127963 0.29461651 159.19101872 
    28440 0.02437263 -0.29472583 0.95527098 207.25830383 
    28441 Axis -0.87276733 0.00190705 -0.48813272 
    28442 Axis point 0.00000000 168.46706398 -509.14759745 
    28443 Rotation angle (degrees) 19.73245852 
    28444 Shift along axis -369.53142265 
    28445  
    28446 
    28447 > fitmap #35 inMap #24
    28448 
    28449 Fit molecule copy of CopZ2_Q9CTG7.pdb (#35) to map postprocess_20231221.mrc
    28450 (#24) using 1463 atoms 
    28451 average map value = 0.003943, steps = 76 
    28452 shifted from previous position = 3.19 
    28453 rotated from previous position = 15.6 degrees 
    28454 atoms outside contour = 807, contour level = 0.0037635 
    28455  
    28456 Position of copy of CopZ2_Q9CTG7.pdb (#35) relative to
    28457 postprocess_20231221.mrc (#24) coordinates: 
    28458 Matrix rotation and translation 
    28459 -0.81856676 0.29507642 -0.49282696 229.55206706 
    28460 0.42680317 0.88664782 -0.17803010 242.02712600 
    28461 0.38443146 -0.35606962 -0.85171997 217.29612729 
    28462 Axis -0.19677594 -0.96957876 0.14558933 
    28463 Axis point 58.96405572 0.00000000 149.10399676 
    28464 Rotation angle (degrees) 153.10277520 
    28465 Shift along axis -248.19868563 
    28466  
    28467 
    28468 > select subtract #35
    28469 
    28470 Nothing selected 
    28471 
    28472 > show #33 models
    28473 
    28474 > select add #33
    28475 
    28476 1420 atoms, 1441 bonds, 177 residues, 1 model selected 
    28477 
    28478 > view matrix models
    28479 > #33,-0.33953,0.93867,-0.060093,373.46,-0.72219,-0.21922,0.65604,118.03,0.60263,0.26614,0.75233,193.62
    28480 
    28481 > ui mousemode right "rotate selected models"
    28482 
    28483 > view matrix models
    28484 > #33,-0.61937,0.78508,-0.0050767,371.62,-0.66718,-0.52292,0.5305,115.73,0.41383,0.33196,0.84767,193.73
    28485 
    28486 > ui mousemode right "translate selected models"
    28487 
    28488 > view matrix models
    28489 > #33,-0.61937,0.78508,-0.0050767,367.56,-0.66718,-0.52292,0.5305,116.75,0.41383,0.33196,0.84767,193.62
    28490 
    28491 > view matrix models
    28492 > #33,-0.61937,0.78508,-0.0050767,366.43,-0.66718,-0.52292,0.5305,117.56,0.41383,0.33196,0.84767,199.06
    28493 
    28494 > view matrix models
    28495 > #33,-0.61937,0.78508,-0.0050767,366.75,-0.66718,-0.52292,0.5305,114.55,0.41383,0.33196,0.84767,197.9
    28496 
    28497 > fitmap #33 inMap #24
    28498 
    28499 Fit molecule copy of CopZ1_P61924.pdb (#33) to map postprocess_20231221.mrc
    28500 (#24) using 1420 atoms 
    28501 average map value = 0.003933, steps = 72 
    28502 shifted from previous position = 2.52 
    28503 rotated from previous position = 27.2 degrees 
    28504 atoms outside contour = 737, contour level = 0.0037635 
    28505  
    28506 Position of copy of CopZ1_P61924.pdb (#33) relative to
    28507 postprocess_20231221.mrc (#24) coordinates: 
    28508 Matrix rotation and translation 
    28509 0.16509917 -0.93968387 -0.29956050 230.49601442 
    28510 -0.38636569 0.21783235 -0.89625366 241.46100099 
    28511 0.90744908 0.26371063 -0.32709767 218.19937857 
    28512 Axis 0.65790876 -0.68459192 0.31383111 
    28513 Axis point 143.36250261 0.00000000 249.48356769 
    28514 Rotation angle (degrees) 118.16959859 
    28515 Shift along axis 54.82085118 
    28516  
    28517 
    28518 > select subtract #33
    28519 
    28520 Nothing selected 
    28521 
    28522 > hide #!24 models
    28523 
    28524 > show #!24 models
    28525 
    28526 > hide #35 models
    28527 
    28528 > hide #33 models
    28529 
    28530 > show #34 models
    28531 
    28532 > fitmap #34 inMap #24
    28533 
    28534 Fit molecule copy of Golph3_ Q9CRA5.pdb (#34) to map postprocess_20231221.mrc
    28535 (#24) using 2367 atoms 
    28536 average map value = 0.0031, steps = 44 
    28537 shifted from previous position = 0.0773 
    28538 rotated from previous position = 0.123 degrees 
    28539 atoms outside contour = 1759, contour level = 0.0037635 
    28540  
    28541 Position of copy of Golph3_ Q9CRA5.pdb (#34) relative to
    28542 postprocess_20231221.mrc (#24) coordinates: 
    28543 Matrix rotation and translation 
    28544 0.66134655 -0.23494320 0.71233590 198.01384438 
    28545 -0.68835567 -0.56736615 0.45195367 233.20446720 
    28546 0.29797183 -0.78923846 -0.53695013 191.32633148 
    28547 Axis -0.89625794 0.29920999 -0.32740662 
    28548 Axis point 0.00000000 180.07319061 -4.27043840 
    28549 Rotation angle (degrees) 136.17721024 
    28550 Shift along axis -170.33588153 
    28551  
    28552 
    28553 > fitmap #34 inMap #24
    28554 
    28555 Fit molecule copy of Golph3_ Q9CRA5.pdb (#34) to map postprocess_20231221.mrc
    28556 (#24) using 2367 atoms 
    28557 average map value = 0.0031, steps = 44 
    28558 shifted from previous position = 0.0313 
    28559 rotated from previous position = 0.053 degrees 
    28560 atoms outside contour = 1755, contour level = 0.0037635 
    28561  
    28562 Position of copy of Golph3_ Q9CRA5.pdb (#34) relative to
    28563 postprocess_20231221.mrc (#24) coordinates: 
    28564 Matrix rotation and translation 
    28565 0.66103116 -0.23578123 0.71235175 198.04144717 
    28566 -0.68874957 -0.56738370 0.45133110 233.20691681 
    28567 0.29776137 -0.78897589 -0.53745252 191.32116399 
    28568 Axis -0.89618237 0.29956180 -0.32729175 
    28569 Axis point 0.00000000 180.10706491 -4.22572784 
    28570 Rotation angle (degrees) 136.21178130 
    28571 Shift along axis -170.23920897 
    28572  
    28573 
    28574 > fitmap #34 inMap #24
    28575 
    28576 Fit molecule copy of Golph3_ Q9CRA5.pdb (#34) to map postprocess_20231221.mrc
    28577 (#24) using 2367 atoms 
    28578 average map value = 0.0031, steps = 48 
    28579 shifted from previous position = 0.0543 
    28580 rotated from previous position = 0.062 degrees 
    28581 atoms outside contour = 1751, contour level = 0.0037635 
    28582  
    28583 Position of copy of Golph3_ Q9CRA5.pdb (#34) relative to
    28584 postprocess_20231221.mrc (#24) coordinates: 
    28585 Matrix rotation and translation 
    28586 0.66039269 -0.23659311 0.71267468 198.05627709 
    28587 -0.68944268 -0.56713155 0.45058916 233.24789908 
    28588 0.29757401 -0.78891413 -0.53764692 191.34687900 
    28589 Axis -0.89599403 0.30006191 -0.32734928 
    28590 Axis point 0.00000000 180.19357918 -4.22356963 
    28591 Rotation angle (degrees) 136.23582773 
    28592 Shift along axis -170.10569549 
    28593  
    28594 
    28595 > hide #34 models
    28596 
    28597 > show #!32 models
    28598 
    28599 > select add #32
    28600 
    28601 6673 atoms, 6786 bonds, 1 pseudobond, 853 residues, 2 models selected 
    28602 
    28603 > view matrix models
    28604 > #32,-0.29559,0.70082,0.64922,370.15,0.41182,0.70668,-0.57534,61.218,-0.86199,0.097298,-0.4975,190.36
    28605 
    28606 > fitmap #32 inMap #24
    28607 
    28608 Fit molecule copy of CopG_Q9QZE5 (#32) to map postprocess_20231221.mrc (#24)
    28609 using 6673 atoms 
    28610 average map value = 0.002906, steps = 120 
    28611 shifted from previous position = 4.38 
    28612 rotated from previous position = 0.0271 degrees 
    28613 atoms outside contour = 5053, contour level = 0.0037635 
    28614  
    28615 Position of copy of CopG_Q9QZE5 (#32) relative to postprocess_20231221.mrc
    28616 (#24) coordinates: 
    28617 Matrix rotation and translation 
    28618 0.47195635 -0.63843665 -0.60799329 228.86598331 
    28619 0.47812803 -0.39405195 0.78493098 278.59789211 
    28620 -0.74070965 -0.66115180 0.11927914 254.30588618 
    28621 Axis -0.78943333 0.07245140 0.60954558 
    28622 Axis point 0.00000000 256.45096103 100.02298261 
    28623 Rotation angle (degrees) 113.66624324 
    28624 Shift along axis -5.47859762 
    28625  
    28626 
    28627 > select subtract #32
    28628 
    28629 Nothing selected 
    28630 
    28631 > hide #!32 models
    28632 
    28633 > show #26 models
    28634 
    28635 > hide #26 models
    28636 
    28637 > show #27 models
    28638 
    28639 > fitmap #27 inMap #24
    28640 
    28641 Fit molecule copy of CopB_Q9JIF7.pdb (#27) to map postprocess_20231221.mrc
    28642 (#24) using 7501 atoms 
    28643 average map value = 0.002923, steps = 136 
    28644 shifted from previous position = 0.0167 
    28645 rotated from previous position = 0.0633 degrees 
    28646 atoms outside contour = 5723, contour level = 0.0037635 
    28647  
    28648 Position of copy of CopB_Q9JIF7.pdb (#27) relative to postprocess_20231221.mrc
    28649 (#24) coordinates: 
    28650 Matrix rotation and translation 
    28651 -0.04120464 -0.73285767 0.67913314 172.36563468 
    28652 -0.03806305 0.68036835 0.73188122 204.54939790 
    28653 -0.99842545 0.00430702 -0.05592913 236.23896056 
    28654 Axis -0.37195243 0.85760601 0.35519477 
    28655 Axis point 209.29692826 0.00000000 -39.84186820 
    28656 Rotation angle (degrees) 102.02759160 
    28657 Shift along axis 195.22181885 
    28658  
    28659 
    28660 > fitmap #27 inMap #24
    28661 
    28662 Fit molecule copy of CopB_Q9JIF7.pdb (#27) to map postprocess_20231221.mrc
    28663 (#24) using 7501 atoms 
    28664 average map value = 0.002923, steps = 96 
    28665 shifted from previous position = 0.0318 
    28666 rotated from previous position = 0.0229 degrees 
    28667 atoms outside contour = 5718, contour level = 0.0037635 
    28668  
    28669 Position of copy of CopB_Q9JIF7.pdb (#27) relative to postprocess_20231221.mrc
    28670 (#24) coordinates: 
    28671 Matrix rotation and translation 
    28672 -0.04158996 -0.73289933 0.67906469 172.37761621 
    28673 -0.03813008 0.68032190 0.73192090 204.57940442 
    28674 -0.99840692 0.00454777 -0.05624008 236.23956794 
    28675 Axis -0.37187976 0.85763098 0.35521056 
    28676 Axis point 209.25825333 0.00000000 -39.80666611 
    28677 Rotation angle (degrees) 102.04934748 
    28678 Shift along axis 195.26467926 
    28679  
    28680 
    28681 > hide #27 models
    28682 
    28683 > show #26 models
    28684 
    28685 > hide #26 models
    28686 
    28687 > show #3 models
    28688 
    28689 > show #4 models
    28690 
    28691 > show #5 models
    28692 
    28693 > show #6 models
    28694 
    28695 > show #7 models
    28696 
    28697 > show #8 models
    28698 
    28699 > show #!9 models
    28700 
    28701 > show #10 models
    28702 
    28703 > show #11 models
    28704 
    28705 > show #12 models
    28706 
    28707 > show #26 models
    28708 
    28709 > show #27 models
    28710 
    28711 > show #28 models
    28712 
    28713 > show #29 models
    28714 
    28715 > show #30 models
    28716 
    28717 > show #31 models
    28718 
    28719 > show #!32 models
    28720 
    28721 > show #33 models
    28722 
    28723 > show #34 models
    28724 
    28725 > show #35 models
    28726 
    28727 > show #!36 models
    28728 
    28729 > hide #!36 models
    28730 
    28731 > show #!37 models
    28732 
    28733 > hide #!37 models
    28734 
    28735 > show #!36 models
    28736 
    28737 > show #!37 models
    28738 
    28739 > hide #!37 models
    28740 
    28741 > show #38 models
    28742 
    28743 > show #39 models
    28744 
    28745 > show #40 models
    28746 
    28747 > hide #40 models
    28748 
    28749 > show #40 models
    28750 
    28751 > hide #40 models
    28752 
    28753 > show #40 models
    28754 
    28755 > show #41 models
    28756 
    28757 > show #42 models
    28758 
    28759 > show #43 models
    28760 
    28761 > hide #43 models
    28762 
    28763 > show #43 models
    28764 
    28765 > show #!44 models
    28766 
    28767 > hide #!44 models
    28768 
    28769 > show #!44 models
    28770 
    28771 > show #45 models
    28772 
    28773 > show #46 models
    28774 
    28775 > show #47 models
    28776 
    28777 > volume #36 level 0.003958
    28778 
    28779 > hide #47 models
    28780 
    28781 > hide #46 models
    28782 
    28783 > hide #45 models
    28784 
    28785 > hide #!44 models
    28786 
    28787 > hide #43 models
    28788 
    28789 > hide #42 models
    28790 
    28791 > hide #41 models
    28792 
    28793 > hide #40 models
    28794 
    28795 > hide #39 models
    28796 
    28797 > hide #38 models
    28798 
    28799 > hide #!36 models
    28800 
    28801 > show #!37 models
    28802 
    28803 > hide #!37 models
    28804 
    28805 > show #!19 models
    28806 
    28807 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    28808 > dataset/Chimera sessions/20240126_linkage_3_fitting_v1.cxs"
    28809 
    28810 ——— End of log from Fri Jan 26 14:05:24 2024 ———
    28811 
    28812 opened ChimeraX session 
    28813 
    28814 > show #!60 models
    28815 
    28816 > hide #!60 models
    28817 
    28818 > show #!60 models
    28819 
    28820 > hide #!60 models
    28821 
    28822 > hide #!1 models
    28823 
    28824 > show #!1 models
    28825 
    28826 > hide #!1 models
    28827 
    28828 > show #!1 models
    28829 
    28830 > hide #3 models
    28831 
    28832 > show #3 models
    28833 
    28834 > hide #!19 models
    28835 
    28836 > show #!23 models
    28837 
    28838 > hide #!23 models
    28839 
    28840 > show #!21 models
    28841 
    28842 > show #!2 models
    28843 
    28844 > hide #!1 models
    28845 
    28846 > show #!1 models
    28847 
    28848 > hide #!2 models
    28849 
    28850 > hide #3 models
    28851 
    28852 > hide #4 models
    28853 
    28854 > hide #5 models
    28855 
    28856 > hide #6 models
    28857 
    28858 > hide #7 models
    28859 
    28860 > hide #8 models
    28861 
    28862 > hide #!9 models
    28863 
    28864 > hide #10 models
    28865 
    28866 > hide #11 models
    28867 
    28868 > hide #12 models
    28869 
    28870 > hide #!21 models
    28871 
    28872 > show #!21 models
    28873 
    28874 > hide #!24 models
    28875 
    28876 > show #!24 models
    28877 
    28878 > hide #26 models
    28879 
    28880 > hide #27 models
    28881 
    28882 > hide #28 models
    28883 
    28884 > hide #29 models
    28885 
    28886 > hide #30 models
    28887 
    28888 > hide #31 models
    28889 
    28890 > hide #!32 models
    28891 
    28892 > hide #33 models
    28893 
    28894 > hide #34 models
    28895 
    28896 > hide #35 models
    28897 
    28898 > show #!36 models
    28899 
    28900 > show #!48 models
    28901 
    28902 > hide #!48 models
    28903 
    28904 > show #!48 models
    28905 
    28906 > hide #!48 models
    28907 
    28908 > close #60
    28909 
    28910 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    28911 > dataset/Chimera sessions/20240212_linkage_4_fitting_v1.cxs"
    28912 
    28913 > hide #!24 models
    28914 
    28915 > show #!24 models
    28916 
    28917 > show #!25 models
    28918 
    28919 > hide #!24 models
    28920 
    28921 > hide #!36 models
    28922 
    28923 > select add #25
    28924 
    28925 2 models selected 
    28926 
    28927 > open "/Users/becca/Desktop/Postdoc/Structure files/COPI
    28928 > structures/5nzv_COPI_coat_linkage4.cif"
    28929 
    28930 5nzv_COPI_coat_linkage4.cif title: 
    28931 The structure of the COPI coat linkage IV [more info...] 
    28932  
    28933 Chain information for 5nzv_COPI_coat_linkage4.cif #60 
    28934 --- 
    28935 Chain | Description | UniProt 
    28936 A H | Coatomer subunit alpha | COPA_MOUSE 1-1224 
    28937 B I | Coatomer subunit beta | COPB_MOUSE 16-968 
    28938 C J | Coatomer subunit beta' | COPB2_MOUSE 1-905 
    28939 D N | Coatomer subunit delta | COPD_MOUSE 1-511 
    28940 E O | Coatomer subunit epsilon | COPE_MOUSE 1-308 
    28941 F M P R T | ADP-ribosylation factor 1 | ARF1_YEAST 1-181 
    28942 G K Q | Coatomer subunit gamma-1 | COPG1_MOUSE 1-874 
    28943 L S U Z | Coatomer subunit zeta-1 | COPZ1_MOUSE 1-177 
    28944  
    28945 
    28946 > hide #!60 atoms
    28947 
    28948 > show #!60 cartoons
    28949 
    28950 [Repeated 1 time(s)]
    28951 
    28952 > hide #!60 models
    28953 
    28954 > show #!60 models
    28955 
    28956 > select subtract #25
    28957 
    28958 Nothing selected 
    28959 
    28960 > select #60/A
    28961 
    28962 4503 atoms, 4501 bonds, 1 pseudobond, 1126 residues, 2 models selected 
    28963 
    28964 > color sel blue
    28965 
    28966 > select #60/H
    28967 
    28968 4503 atoms, 4501 bonds, 1 pseudobond, 1126 residues, 2 models selected 
    28969 
    28970 > color sel blue
    28971 
    28972 > select #60/B
    28973 
    28974 3198 atoms, 3193 bonds, 4 pseudobonds, 800 residues, 2 models selected 
    28975 
    28976 > color sel dark green
    28977 
    28978 > select #60/I
    28979 
    28980 3198 atoms, 3193 bonds, 4 pseudobonds, 800 residues, 2 models selected 
    28981 
    28982 > color sel dark green
    28983 
    28984 > select #60/C
    28985 
    28986 3371 atoms, 3370 bonds, 843 residues, 1 model selected 
    28987 
    28988 > color sel cyan
    28989 
    28990 > select #60/J
    28991 
    28992 3371 atoms, 3370 bonds, 843 residues, 1 model selected 
    28993 
    28994 > color sel cyan
    28995 
    28996 > select #60/D
    28997 
    28998 1707 atoms, 1704 bonds, 2 pseudobonds, 427 residues, 2 models selected 
    28999 
    29000 > color sel sienna
    29001 
    29002 > select #60/N
    29003 
    29004 706 atoms, 704 bonds, 1 pseudobond, 177 residues, 2 models selected 
    29005 
    29006 > color sel sienna
    29007 
    29008 [Repeated 1 time(s)]
    29009 
    29010 > select #60/E
    29011 
    29012 1169 atoms, 1168 bonds, 292 residues, 1 model selected 
    29013 
    29014 > color sel orange
    29015 
    29016 > select #60/O
    29017 
    29018 1169 atoms, 1168 bonds, 292 residues, 1 model selected 
    29019 
    29020 > color sel orange
    29021 
    29022 > select #60/G
    29023 
    29024 3190 atoms, 3188 bonds, 1 pseudobond, 798 residues, 2 models selected 
    29025 
    29026 > color sel lime green
    29027 
    29028 > select #60/K
    29029 
    29030 2239 atoms, 2237 bonds, 1 pseudobond, 560 residues, 2 models selected 
    29031 
    29032 > color sel lime green
    29033 
    29034 > select #60/Q
    29035 
    29036 2239 atoms, 2237 bonds, 1 pseudobond, 560 residues, 2 models selected 
    29037 
    29038 > color sel lime green
    29039 
    29040 > select #60/L
    29041 
    29042 555 atoms, 554 bonds, 139 residues, 1 model selected 
    29043 
    29044 > color sel yellow
    29045 
    29046 > select #60/S
    29047 
    29048 555 atoms, 554 bonds, 139 residues, 1 model selected 
    29049 
    29050 > color sel yellow
    29051 
    29052 > select #60/U
    29053 
    29054 555 atoms, 554 bonds, 139 residues, 1 model selected 
    29055 
    29056 > color sel yellow
    29057 
    29058 > select #60/Z
    29059 
    29060 555 atoms, 554 bonds, 139 residues, 1 model selected 
    29061 
    29062 > color sel yellow
    29063 
    29064 > select #60/F
    29065 
    29066 635 atoms, 634 bonds, 159 residues, 1 model selected 
    29067 
    29068 > color sel hot pink
    29069 
    29070 > select #60/M
    29071 
    29072 635 atoms, 634 bonds, 159 residues, 1 model selected 
    29073 
    29074 > color sel hot pink
    29075 
    29076 > select #60/P
    29077 
    29078 635 atoms, 634 bonds, 159 residues, 1 model selected 
    29079 
    29080 > color sel hot pink
    29081 
    29082 > select #60/P
    29083 
    29084 635 atoms, 634 bonds, 159 residues, 1 model selected 
    29085 
    29086 > color sel hot pink
    29087 
    29088 > select #60/R
    29089 
    29090 635 atoms, 634 bonds, 159 residues, 1 model selected 
    29091 
    29092 > color sel hot pink
    29093 
    29094 > select #60/T
    29095 
    29096 635 atoms, 634 bonds, 159 residues, 1 model selected 
    29097 
    29098 > color sel hot pink
    29099 
    29100 [Repeated 1 time(s)]
    29101 
    29102 > select add #60
    29103 
    29104 39958 atoms, 39920 bonds, 16 pseudobonds, 9995 residues, 2 models selected 
    29105 
    29106 > select subtract #60
    29107 
    29108 Nothing selected 
    29109 
    29110 > hide #!25 models
    29111 
    29112 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    29113 > dataset/Chimera sessions/20240212_linkage_4_fitting_v2.cxs"
    29114 
    29115 > show #3 models
    29116 
    29117 > show #4 models
    29118 
    29119 > show #5 models
    29120 
    29121 > show #6 models
    29122 
    29123 > show #7 models
    29124 
    29125 > show #8 models
    29126 
    29127 > show #!9 models
    29128 
    29129 > show #10 models
    29130 
    29131 > show #11 models
    29132 
    29133 > hide #!21 models
    29134 
    29135 > select add #60
    29136 
    29137 39958 atoms, 39920 bonds, 16 pseudobonds, 9995 residues, 2 models selected 
    29138 
    29139 > ui mousemode right "translate selected models"
    29140 
    29141 > view matrix models #60,1,0,0,37.035,0,1,0,148.62,0,0,1,164.59
    29142 
    29143 > ui mousemode right "rotate selected models"
    29144 
    29145 > view matrix models
    29146 > #60,0.88046,-0.40119,-0.25267,199.92,0.41104,0.9115,-0.014964,65.488,0.23631,-0.090682,0.96744,129.73
    29147 
    29148 > ui mousemode right "translate selected models"
    29149 
    29150 > view matrix models
    29151 > #60,0.88046,-0.40119,-0.25267,168.79,0.41104,0.9115,-0.014964,111.56,0.23631,-0.090682,0.96744,138.66
    29152 
    29153 > view matrix models
    29154 > #60,0.88046,-0.40119,-0.25267,173.29,0.41104,0.9115,-0.014964,98.13,0.23631,-0.090682,0.96744,98.534
    29155 
    29156 > ui mousemode right "rotate selected models"
    29157 
    29158 > view matrix models
    29159 > #60,0.75569,-0.38828,-0.52742,256.19,0.54343,0.82121,0.17406,46.108,0.36553,-0.41815,0.83159,160.09
    29160 
    29161 > view matrix models
    29162 > #60,0.76494,-0.3632,-0.53193,249.54,0.52274,0.83256,0.18326,47.209,0.37631,-0.41825,0.82672,158.33
    29163 
    29164 > ui mousemode right "translate selected models"
    29165 
    29166 > view matrix models
    29167 > #60,0.76494,-0.3632,-0.53193,227.87,0.52274,0.83256,0.18326,56.959,0.37631,-0.41825,0.82672,126.46
    29168 
    29169 > view matrix models
    29170 > #60,0.76494,-0.3632,-0.53193,220.4,0.52274,0.83256,0.18326,55.122,0.37631,-0.41825,0.82672,131.33
    29171 
    29172 > select subtract #60
    29173 
    29174 Nothing selected 
    29175 
    29176 > ui tool show "Fit in Map"
    29177 
    29178 > show #!21 models
    29179 
    29180 > hide #!1 models
    29181 
    29182 > hide #3 models
    29183 
    29184 > show #3 models
    29185 
    29186 > hide #3 models
    29187 
    29188 > hide #4 models
    29189 
    29190 > hide #5 models
    29191 
    29192 > hide #6 models
    29193 
    29194 > hide #7 models
    29195 
    29196 > show #7 models
    29197 
    29198 > hide #7 models
    29199 
    29200 > show #7 models
    29201 
    29202 > hide #8 models
    29203 
    29204 > hide #!9 models
    29205 
    29206 > hide #10 models
    29207 
    29208 > hide #11 models
    29209 
    29210 > select add #60
    29211 
    29212 39958 atoms, 39920 bonds, 16 pseudobonds, 9995 residues, 2 models selected 
    29213 
    29214 > view matrix models
    29215 > #60,0.76494,-0.3632,-0.53193,216.67,0.52274,0.83256,0.18326,47.042,0.37631,-0.41825,0.82672,132
    29216 
    29217 > view matrix models
    29218 > #60,0.76494,-0.3632,-0.53193,218.27,0.52274,0.83256,0.18326,38.966,0.37631,-0.41825,0.82672,133.84
    29219 
    29220 > view matrix models
    29221 > #60,0.76494,-0.3632,-0.53193,228.16,0.52274,0.83256,0.18326,37.074,0.37631,-0.41825,0.82672,136.97
    29222 
    29223 > fitmap #60 inMap #21
    29224 
    29225 Fit molecule 5nzv_COPI_coat_linkage4.cif (#60) to map
    29226 COPI_golph_linkage4_postprocess.mrc (#21) using 39958 atoms 
    29227 average map value = 0.5448, steps = 116 
    29228 shifted from previous position = 17.2 
    29229 rotated from previous position = 12.4 degrees 
    29230 atoms outside contour = 14338, contour level = 0.49979 
    29231  
    29232 Position of 5nzv_COPI_coat_linkage4.cif (#60) relative to
    29233 COPI_golph_linkage4_postprocess.mrc (#21) coordinates: 
    29234 Matrix rotation and translation 
    29235 -0.86035372 0.50969732 -0.00033404 340.70998833 
    29236 -0.50956209 -0.86014019 -0.02247969 533.98917184 
    29237 -0.01174515 -0.01917027 0.99974725 172.36839673 
    29238 Axis 0.00324666 0.01119474 -0.99993207 
    29239 Axis point 244.03857465 221.21265529 0.00000000 
    29240 Rotation angle (degrees) 149.35852660 
    29241 Shift along axis -165.27264720 
    29242  
    29243 
    29244 > combine #60
    29245 
    29246 > select subtract #60
    29247 
    29248 Nothing selected 
    29249 
    29250 > select add #61
    29251 
    29252 39958 atoms, 39920 bonds, 16 pseudobonds, 9995 residues, 2 models selected 
    29253 
    29254 > ui mousemode right "rotate selected models"
    29255 
    29256 > view matrix models
    29257 > #61,-0.88507,0.10712,-0.45297,545.09,-0.17602,-0.97792,0.11267,612.88,-0.4309,0.17945,0.88438,214.46
    29258 
    29259 > ui mousemode right "translate selected models"
    29260 
    29261 > view matrix models
    29262 > #61,-0.88507,0.10712,-0.45297,432.57,-0.17602,-0.97792,0.11267,530.18,-0.4309,0.17945,0.88438,194.95
    29263 
    29264 > view matrix models
    29265 > #61,-0.88507,0.10712,-0.45297,453.48,-0.17602,-0.97792,0.11267,515.8,-0.4309,0.17945,0.88438,159.62
    29266 
    29267 > view matrix models
    29268 > #61,-0.88507,0.10712,-0.45297,427.53,-0.17602,-0.97792,0.11267,521.08,-0.4309,0.17945,0.88438,143.87
    29269 
    29270 > ui mousemode right "rotate selected models"
    29271 
    29272 > view matrix models
    29273 > #61,-0.46993,0.75114,-0.46363,191.02,-0.72552,-0.62785,-0.28183,665.59,-0.50278,0.20393,0.84001,165.76
    29274 
    29275 > view matrix models
    29276 > #61,-0.60124,0.60127,-0.52629,267.65,-0.48832,-0.79781,-0.35362,654.59,-0.6325,0.044382,0.77329,244.78
    29277 
    29278 > ui mousemode right "translate selected models"
    29279 
    29280 > view matrix models
    29281 > #61,-0.60124,0.60127,-0.52629,276.46,-0.48832,-0.79781,-0.35362,684.67,-0.6325,0.044382,0.77329,254.69
    29282 
    29283 > ui mousemode right "translate selected models"
    29284 
    29285 > view matrix models
    29286 > #61,-0.60124,0.60127,-0.52629,288.26,-0.48832,-0.79781,-0.35362,672.13,-0.6325,0.044382,0.77329,229.78
    29287 
    29288 > ui mousemode right "rotate selected models"
    29289 
    29290 > view matrix models
    29291 > #61,-0.58591,0.54673,-0.59816,309.75,-0.38735,-0.83729,-0.38588,660.98,-0.7118,0.0056101,0.70236,271.85
    29292 
    29293 > view matrix models
    29294 > #61,-0.68594,0.43226,-0.58535,356.31,-0.40681,-0.89478,-0.18404,638.22,-0.60331,0.11188,0.78962,205.2
    29295 
    29296 > ui mousemode right "translate selected models"
    29297 
    29298 > view matrix models
    29299 > #61,-0.68594,0.43226,-0.58535,373.1,-0.40681,-0.89478,-0.18404,638.85,-0.60331,0.11188,0.78962,220.16
    29300 
    29301 > fitmap #61 inMap #21
    29302 
    29303 Fit molecule copy of 5nzv_COPI_coat_linkage4.cif (#61) to map
    29304 COPI_golph_linkage4_postprocess.mrc (#21) using 39958 atoms 
    29305 average map value = 0.5448, steps = 104 
    29306 shifted from previous position = 22.2 
    29307 rotated from previous position = 16.4 degrees 
    29308 atoms outside contour = 14328, contour level = 0.49979 
    29309  
    29310 Position of copy of 5nzv_COPI_coat_linkage4.cif (#61) relative to
    29311 COPI_golph_linkage4_postprocess.mrc (#21) coordinates: 
    29312 Matrix rotation and translation 
    29313 0.86035795 -0.50969014 0.00039665 203.60052554 
    29314 0.50955528 0.86014769 0.02234648 10.35119498 
    29315 -0.01173096 -0.01902386 0.99975021 172.32402514 
    29316 Axis -0.04055292 0.01188799 0.99910667 
    29317 Axis point 89.96540407 387.86258211 0.00000000 
    29318 Rotation angle (degrees) 30.66905056 
    29319 Shift along axis 164.03654079 
    29320  
    29321 
    29322 > select subtract #61
    29323 
    29324 Nothing selected 
    29325 
    29326 > hide #!61 models
    29327 
    29328 > hide #!60 models
    29329 
    29330 > show #!60 models
    29331 
    29332 > hide #!60 models
    29333 
    29334 > hide #7 models
    29335 
    29336 > show #!1 models
    29337 
    29338 > show #!2 models
    29339 
    29340 > hide #!2 models
    29341 
    29342 > hide #!1 models
    29343 
    29344 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    29345 > dataset/Chimera sessions/20240212_linkage_4_fitting_v3.cxs"
    29346 
    29347 > hide #!21 models
    29348 
    29349 > show #!21 models
    29350 
    29351 > hide #!21 models
    29352 
    29353 > show #!24 models
    29354 
    29355 > hide #!24 models
    29356 
    29357 > close #24
    29358 
    29359 > close #25
    29360 
    29361 > close #26-31,33-35,38-43,45-47,50-55,57-59#32,36-37,44,48-49,56,60-61
    29362 
    29363 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    29364 > dataset/Chimera sessions/20240212_leaf_fitting_v1.cxs"
    29365 
    29366 > show #!1 models
    29367 
    29368 > show #3 models
    29369 
    29370 > show #4 models
    29371 
    29372 > show #5 models
    29373 
    29374 > show #6 models
    29375 
    29376 > show #7 models
    29377 
    29378 > show #8 models
    29379 
    29380 > show #!9 models
    29381 
    29382 > show #10 models
    29383 
    29384 > show #11 models
    29385 
    29386 > show #12 models
    29387 
    29388 > open "/Users/becca/Desktop/Postdoc/Structure files/COPI
    29389 > structures/3kn1_Golph3_xtal.cif"
    29390 
    29391 3kn1_Golph3_xtal.cif title: 
    29392 Crystal Structure of Golgi Phosphoprotein 3 N-term Truncation Variant [more
    29393 info...] 
    29394  
    29395 Chain information for 3kn1_Golph3_xtal.cif #24 
    29396 --- 
    29397 Chain | Description | UniProt 
    29398 A | Golgi phosphoprotein 3 | GOLP3_HUMAN 52-298 
    29399  
    29400 Non-standard residues in 3kn1_Golph3_xtal.cif #24 
    29401 --- 
    29402 SO4 — sulfate ion 
    29403  
    29404 3kn1_Golph3_xtal.cif mmCIF Assemblies 
    29405 --- 
    29406 1| author_defined_assembly 
    29407 2| software_defined_assembly 
    29408  
    29409 
    29410 > select add #24
    29411 
    29412 1934 atoms, 1950 bonds, 254 residues, 1 model selected 
    29413 
    29414 > color #24 #d783ffff
    29415 
    29416 > color #24 #ae14ffff
    29417 
    29418 > view matrix models #24,1,0,0,76.862,0,1,0,319.67,0,0,1,20.57
    29419 
    29420 > view matrix models #24,1,0,0,244.68,0,1,0,293.79,0,0,1,354.95
    29421 
    29422 > view matrix models #24,1,0,0,319.16,0,1,0,281,0,0,1,332.02
    29423 
    29424 > view matrix models #24,1,0,0,329.65,0,1,0,285.54,0,0,1,337.19
    29425 
    29426 > hide #12 models
    29427 
    29428 > hide #10 models
    29429 
    29430 > hide #!9 models
    29431 
    29432 > hide #8 models
    29433 
    29434 > hide #7 models
    29435 
    29436 > hide #6 models
    29437 
    29438 > hide #5 models
    29439 
    29440 > hide #4 models
    29441 
    29442 > hide #3 models
    29443 
    29444 > view matrix models #24,1,0,0,323.59,0,1,0,290.3,0,0,1,325.47
    29445 
    29446 > ui mousemode right "rotate selected models"
    29447 
    29448 > view matrix models
    29449 > #24,0.74281,-0.61084,-0.27408,346.77,-0.66844,-0.65348,-0.35518,361.6,0.03785,0.44703,-0.89372,259.81
    29450 
    29451 > view matrix models
    29452 > #24,-0.055201,0.94985,-0.30778,252.19,-0.46271,-0.29749,-0.8351,333.91,-0.88479,0.096314,0.45593,295.74
    29453 
    29454 > fitmap #24 inMap #1
    29455 
    29456 Fit molecule 3kn1_Golph3_xtal.cif (#24) to map postprocess_20231221.mrc (#1)
    29457 using 1934 atoms 
    29458 average map value = 0.00325, steps = 76 
    29459 shifted from previous position = 1.46 
    29460 rotated from previous position = 33.2 degrees 
    29461 atoms outside contour = 1323, contour level = 0.0036898 
    29462  
    29463 Position of 3kn1_Golph3_xtal.cif (#24) relative to postprocess_20231221.mrc
    29464 (#1) coordinates: 
    29465 Matrix rotation and translation 
    29466 0.23196046 0.95676416 -0.17548983 148.15479830 
    29467 0.01108322 -0.18299837 -0.98305074 219.64194040 
    29468 -0.97266207 0.22608391 -0.05305242 161.81679309 
    29469 Axis 0.69904993 0.46087770 -0.54673662 
    29470 Axis point 0.00000000 -31.84998852 207.22130057 
    29471 Rotation angle (degrees) 120.13539920 
    29472 Shift along axis 116.32450764 
    29473  
    29474 
    29475 > select subtract #24
    29476 
    29477 Nothing selected 
    29478 
    29479 > hide #11 models
    29480 
    29481 > select add #24
    29482 
    29483 1934 atoms, 1950 bonds, 254 residues, 1 model selected 
    29484 
    29485 > hide sel cartoons
    29486 
    29487 > hide sel atoms
    29488 
    29489 > show sel cartoons
    29490 
    29491 > select subtract #24
    29492 
    29493 Nothing selected 
    29494 
    29495 > hide #24 models
    29496 
    29497 > show #24 models
    29498 
    29499 > hide #24 models
    29500 
    29501 > open "/Users/becca/Desktop/Postdoc/Structure files/COPI
    29502 > structures/1pzd_Cow_Cterm_COPI_gamma.cif"
    29503 
    29504 1pzd_Cow_Cterm_COPI_gamma.cif title: 
    29505 Structural Identification of a conserved appendage domain in the carboxyl-
    29506 terminus of the COPI gamma-subunit. [more info...] 
    29507  
    29508 Chain information for 1pzd_Cow_Cterm_COPI_gamma.cif #25 
    29509 --- 
    29510 Chain | Description | UniProt 
    29511 A | Coatomer gamma subunit | COPG_BOVIN 555-874 
    29512  
    29513 Non-standard residues in 1pzd_Cow_Cterm_COPI_gamma.cif #25 
    29514 --- 
    29515 SO4 — sulfate ion 
    29516  
    29517 
    29518 > color #25 #25ff00ff
    29519 
    29520 > select add #25
    29521 
    29522 2270 atoms, 2156 bonds, 426 residues, 1 model selected 
    29523 
    29524 > view matrix models
    29525 > #25,0.99785,0.051021,-0.041055,-0.040446,-0.050714,0.99868,0.008493,-0.87771,0.041434,-0.0063927,0.99912,0.71759
    29526 
    29527 > show #!9 models
    29528 
    29529 > ui mousemode right "translate selected models"
    29530 
    29531 > view matrix models
    29532 > #25,0.99785,0.051021,-0.041055,268.32,-0.050714,0.99868,0.008493,68.422,0.041434,-0.0063927,0.99912,-94.739
    29533 
    29534 > view matrix models
    29535 > #25,0.99785,0.051021,-0.041055,443.58,-0.050714,0.99868,0.008493,42.599,0.041434,-0.0063927,0.99912,275.15
    29536 
    29537 > view matrix models
    29538 > #25,0.99785,0.051021,-0.041055,342.71,-0.050714,0.99868,0.008493,278.54,0.041434,-0.0063927,0.99912,101.4
    29539 
    29540 > view matrix models
    29541 > #25,0.99785,0.051021,-0.041055,306.81,-0.050714,0.99868,0.008493,413.82,0.041434,-0.0063927,0.99912,395.66
    29542 
    29543 > view matrix models
    29544 > #25,0.99785,0.051021,-0.041055,370.4,-0.050714,0.99868,0.008493,389.86,0.041434,-0.0063927,0.99912,396.35
    29545 
    29546 > view matrix models
    29547 > #25,0.99785,0.051021,-0.041055,369.55,-0.050714,0.99868,0.008493,392.01,0.041434,-0.0063927,0.99912,392.17
    29548 
    29549 > ui mousemode right "rotate selected models"
    29550 
    29551 > view matrix models
    29552 > #25,0.48233,-0.84618,0.22658,354.09,-0.57775,-0.50171,-0.64381,358.99,0.65845,0.17963,-0.73087,384.48
    29553 
    29554 > select subtract #25
    29555 
    29556 Nothing selected 
    29557 
    29558 > select add #25
    29559 
    29560 2270 atoms, 2156 bonds, 426 residues, 1 model selected 
    29561 
    29562 > view matrix models
    29563 > #25,0.35653,-0.92737,0.11347,349.48,-0.80502,-0.36657,-0.46644,358.18,0.47416,0.074953,-0.87724,378.11
    29564 
    29565 > ui mousemode right "translate selected models"
    29566 
    29567 > view matrix models
    29568 > #25,0.35653,-0.92737,0.11347,390.87,-0.80502,-0.36657,-0.46644,411.96,0.47416,0.074953,-0.87724,372.42
    29569 
    29570 > ui mousemode right "rotate selected models"
    29571 
    29572 > view matrix models
    29573 > #25,0.56564,-0.65159,-0.50544,389.97,-0.41843,0.30138,-0.85679,421.17,0.71061,0.69613,-0.10218,392.67
    29574 
    29575 > view matrix models
    29576 > #25,-0.53046,0.19734,0.82442,393.85,-0.21141,0.911,-0.3541,437.38,-0.82092,-0.36212,-0.44153,348.7
    29577 
    29578 > ui mousemode right "translate selected models"
    29579 
    29580 > view matrix models
    29581 > #25,-0.53046,0.19734,0.82442,363.98,-0.21141,0.911,-0.3541,405.84,-0.82092,-0.36212,-0.44153,329.07
    29582 
    29583 > ui mousemode right "rotate selected models"
    29584 
    29585 > view matrix models
    29586 > #25,0.75487,-0.6524,0.067339,370.77,0.24711,0.1878,-0.95061,400.07,0.60754,0.73423,0.30298,376.45
    29587 
    29588 > ui mousemode right "translate selected models"
    29589 
    29590 > view matrix models
    29591 > #25,0.75487,-0.6524,0.067339,356.56,0.24711,0.1878,-0.95061,383.71,0.60754,0.73423,0.30298,398.36
    29592 
    29593 > view matrix models
    29594 > #25,0.75487,-0.6524,0.067339,359.81,0.24711,0.1878,-0.95061,386.47,0.60754,0.73423,0.30298,399.6
    29595 
    29596 > view matrix models
    29597 > #25,0.75487,-0.6524,0.067339,358.31,0.24711,0.1878,-0.95061,385.62,0.60754,0.73423,0.30298,399.28
    29598 
    29599 > select subtract #25
    29600 
    29601 Nothing selected 
    29602 
    29603 > select add #25
    29604 
    29605 2270 atoms, 2156 bonds, 426 residues, 1 model selected 
    29606 
    29607 > view matrix models
    29608 > #25,0.75487,-0.6524,0.067339,361.35,0.24711,0.1878,-0.95061,389.45,0.60754,0.73423,0.30298,396.81
    29609 
    29610 > view matrix models
    29611 > #25,0.75487,-0.6524,0.067339,360.11,0.24711,0.1878,-0.95061,390.36,0.60754,0.73423,0.30298,397.06
    29612 
    29613 > view matrix models
    29614 > #25,0.75487,-0.6524,0.067339,359.34,0.24711,0.1878,-0.95061,388.11,0.60754,0.73423,0.30298,396.07
    29615 
    29616 > select subtract #25
    29617 
    29618 Nothing selected 
    29619 
    29620 > hide #25 models
    29621 
    29622 > open "/Users/becca/Desktop/Postdoc/Structure files/COPI
    29623 > structures/1r4x_human_gammaCOPI_appendage.cif"
    29624 
    29625 Summary of feedback from opening /Users/becca/Desktop/Postdoc/Structure
    29626 files/COPI structures/1r4x_human_gammaCOPI_appendage.cif 
    29627 --- 
    29628 notes | Fetching CCD CAS from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/S/CAS/CAS.cif 
    29629 Fetching CCD MG from
    29630 https://files.wwpdb.org/pub/pdb/refdata/chem_comp/G/MG/MG.cif 
    29631  
    29632 1r4x_human_gammaCOPI_appendage.cif title: 
    29633 Crystal Structure Analys of the Gamma-COPI Appendage domain [more info...] 
    29634  
    29635 Chain information for 1r4x_human_gammaCOPI_appendage.cif #26 
    29636 --- 
    29637 Chain | Description | UniProt 
    29638 A | Coatomer gamma subunit | COPG_HUMAN 608-874 
    29639  
    29640 Non-standard residues in 1r4x_human_gammaCOPI_appendage.cif #26 
    29641 --- 
    29642 MG — magnesium ion 
    29643  
    29644 
    29645 > select add #26
    29646 
    29647 2431 atoms, 2223 bonds, 6 pseudobonds, 529 residues, 2 models selected 
    29648 
    29649 > view matrix models #26,1,0,0,-212.89,0,1,0,226.41,0,0,1,231.42
    29650 
    29651 > view matrix models #26,1,0,0,256.86,0,1,0,340.17,0,0,1,111.16
    29652 
    29653 > view matrix models #26,1,0,0,259.06,0,1,0,226.87,0,0,1,291.2
    29654 
    29655 > view matrix models #26,1,0,0,335.89,0,1,0,395.85,0,0,1,373.68
    29656 
    29657 > view matrix models #26,1,0,0,334.68,0,1,0,358.65,0,0,1,373.47
    29658 
    29659 > ui mousemode right "rotate selected models"
    29660 
    29661 > view matrix models
    29662 > #26,0.90568,0.26692,0.32937,328.71,0.27791,0.21291,-0.93671,376.1,-0.32016,0.93991,0.11865,363.54
    29663 
    29664 > view matrix models
    29665 > #26,0.93043,0.12952,0.34283,331.25,0.3157,0.19182,-0.92927,375.77,-0.18612,0.97285,0.13758,359.97
    29666 
    29667 > ui mousemode right "translate selected models"
    29668 
    29669 > view matrix models
    29670 > #26,0.93043,0.12952,0.34283,324.67,0.3157,0.19182,-0.92927,388.63,-0.18612,0.97285,0.13758,359.76
    29671 
    29672 > select subtract #26
    29673 
    29674 Nothing selected 
    29675 
    29676 > ui mousemode right "rotate selected models"
    29677 
    29678 > select add #26
    29679 
    29680 2431 atoms, 2223 bonds, 6 pseudobonds, 529 residues, 2 models selected 
    29681 
    29682 > view matrix models
    29683 > #26,0.60771,0.76591,0.20992,317.51,-0.018932,0.27822,-0.96033,393.63,-0.79393,0.57963,0.18358,380.77
    29684 
    29685 > view matrix models
    29686 > #26,0.40779,0.88038,0.24214,318.79,-0.10206,0.30748,-0.94607,394.58,-0.90735,0.36108,0.21524,387.86
    29687 
    29688 > ui mousemode right "translate selected models"
    29689 
    29690 > view matrix models
    29691 > #26,0.40779,0.88038,0.24214,317.48,-0.10206,0.30748,-0.94607,393.41,-0.90735,0.36108,0.21524,387.64
    29692 
    29693 > ui mousemode right "rotate selected models"
    29694 
    29695 > view matrix models
    29696 > #26,0.23238,0.91777,0.32203,319.75,-0.075931,0.3472,-0.93471,391.91,-0.96966,0.19276,0.15037,393.08
    29697 
    29698 > ui mousemode right "translate selected models"
    29699 
    29700 > view matrix models
    29701 > #26,0.23238,0.91777,0.32203,318.06,-0.075931,0.3472,-0.93471,391.25,-0.96966,0.19276,0.15037,393.06
    29702 
    29703 > view matrix models
    29704 > #26,0.23238,0.91777,0.32203,320.02,-0.075931,0.3472,-0.93471,390.45,-0.96966,0.19276,0.15037,392.61
    29705 
    29706 > ui mousemode right "rotate selected models"
    29707 
    29708 > view matrix models
    29709 > #26,0.18279,0.84636,0.50026,321.66,-0.36681,0.5308,-0.76401,391.24,-0.91216,-0.043845,0.40748,395.38
    29710 
    29711 > ui mousemode right "translate selected models"
    29712 
    29713 > view matrix models
    29714 > #26,0.18279,0.84636,0.50026,320.13,-0.36681,0.5308,-0.76401,391.23,-0.91216,-0.043845,0.40748,395.54
    29715 
    29716 > view matrix models
    29717 > #26,0.18279,0.84636,0.50026,319.95,-0.36681,0.5308,-0.76401,390.34,-0.91216,-0.043845,0.40748,396.46
    29718 
    29719 > ui mousemode right "rotate selected models"
    29720 
    29721 > view matrix models
    29722 > #26,0.39112,0.85498,0.34062,316.41,-0.13922,0.42081,-0.8964,388.95,-0.90975,0.30318,0.28362,389.22
    29723 
    29724 > view matrix models
    29725 > #26,0.33989,0.86733,0.36362,317.05,-0.088513,0.41442,-0.90577,388.12,-0.93629,0.27568,0.21763,390.75
    29726 
    29727 > view matrix models
    29728 > #26,0.33005,0.86588,0.37592,317.21,-0.14277,0.43944,-0.88685,388.54,-0.93311,0.23903,0.26866,391.24
    29729 
    29730 > select subtract #26
    29731 
    29732 Nothing selected 
    29733 
    29734 > color #26 #39ff00ff
    29735 
    29736 > hide #!26 models
    29737 
    29738 > open "/Users/becca/Desktop/Postdoc/Structure files/COPI
    29739 > structures/2hf6_human_zetaCOPI_NMR.cif"
    29740 
    29741 2hf6_human_zetaCOPI_NMR.cif title: 
    29742 Solution structure of human zeta-COP [more info...] 
    29743  
    29744 Chain information for 2hf6_human_zetaCOPI_NMR.cif 
    29745 --- 
    29746 Chain | Description | UniProt 
    29747 27.1/A 27.2/A 27.3/A 27.4/A 27.5/A 27.6/A 27.7/A 27.8/A 27.9/A 27.10/A 27.11/A 27.12/A 27.13/A 27.14/A 27.15/A 27.16/A 27.17/A 27.18/A 27.19/A 27.20/A | Coatomer subunit zeta-1 | COPZ1_HUMAN 1-149 
    29748  
    29749 
    29750 > select add #27
    29751 
    29752 48140 atoms, 48500 bonds, 2980 residues, 21 models selected 
    29753 
    29754 > ui mousemode right "translate selected models"
    29755 
    29756 > view matrix models #27,1,0,0,307.78,0,1,0,153.43,0,0,1,-18.14
    29757 
    29758 > view matrix models #27,1,0,0,441.62,0,1,0,436.79,0,0,1,179.77
    29759 
    29760 > view matrix models #27,1,0,0,395.34,0,1,0,287,0,0,1,282.89
    29761 
    29762 > select subtract #27
    29763 
    29764 Nothing selected 
    29765 
    29766 > color #27 #fffb00ff models
    29767 
    29768 > hide #!9 models
    29769 
    29770 > show #10 models
    29771 
    29772 > select add #10
    29773 
    29774 1420 atoms, 1441 bonds, 177 residues, 1 model selected 
    29775 
    29776 > select add #27
    29777 
    29778 49560 atoms, 49941 bonds, 3157 residues, 22 models selected 
    29779 
    29780 > hide sel atoms
    29781 
    29782 > select subtract #27
    29783 
    29784 1420 atoms, 1441 bonds, 177 residues, 1 model selected 
    29785 
    29786 > select subtract #10
    29787 
    29788 Nothing selected 
    29789 
    29790 > select add #27
    29791 
    29792 48140 atoms, 48500 bonds, 2980 residues, 21 models selected 
    29793 
    29794 > hide sel atoms
    29795 
    29796 [Repeated 1 time(s)]
    29797 
    29798 > show sel atoms
    29799 
    29800 > hide sel atoms
    29801 
    29802 > hide sel cartoons
    29803 
    29804 > show sel cartoons
    29805 
    29806 > select subtract #27
    29807 
    29808 Nothing selected 
    29809 
    29810 > hide #!27 models
    29811 
    29812 > hide #10 models
    29813 
    29814 > show #11 models
    29815 
    29816 > show #24 models
    29817 
    29818 > volume #1 level 0.003379
    29819 
    29820 [Repeated 1 time(s)]
    29821 
    29822 > hide #11 models
    29823 
    29824 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    29825 > dataset/Chimera sessions/20240212_leaf_fitting_v2.cxs"
    29826 
    29827 ——— End of log from Mon Feb 12 10:40:16 2024 ———
    29828 
    29829 opened ChimeraX session 
    29830 
    29831 > hide #24 models
    29832 
    29833 > show #24 models
    29834 
    29835 > hide #24 models
    29836 
    29837 > show #25 models
    29838 
    29839 > hide #25 models
    29840 
    29841 > close #26
    29842 
    29843 > close #27
    29844 
    29845 > hide #!1 models
    29846 
    29847 > show #!1 models
    29848 
    29849 > show #3 models
    29850 
    29851 > hide #3 models
    29852 
    29853 > show #4 models
    29854 
    29855 > hide #4 models
    29856 
    29857 > show #6 models
    29858 
    29859 > show #5 models
    29860 
    29861 > hide #6 models
    29862 
    29863 > hide #5 models
    29864 
    29865 > show #7 models
    29866 
    29867 > hide #7 models
    29868 
    29869 > show #7 models
    29870 
    29871 > hide #7 models
    29872 
    29873 > show #24 models
    29874 
    29875 > hide #24 models
    29876 
    29877 > close #25
    29878 
    29879 > show #24 models
    29880 
    29881 > hide #24 models
    29882 
    29883 > show #24 models
    29884 
    29885 > hide #24 models
    29886 
    29887 > open "/Users/becca/Desktop/Postdoc/Structure files/COPI
    29888 > structures/5nzr_COPI_coat_leaf_2017.cif"
    29889 
    29890 5nzr_COPI_coat_leaf_2017.cif title: 
    29891 The structure of the COPI coat leaf [more info...] 
    29892  
    29893 Chain information for 5nzr_COPI_coat_leaf_2017.cif #25 
    29894 --- 
    29895 Chain | Description | UniProt 
    29896 A | Coatomer subunit alpha | COPA_MOUSE 1-1224 
    29897 B | Coatomer subunit beta | COPB_MOUSE 16-968 
    29898 C | Coatomer subunit beta' | COPB2_MOUSE 1-905 
    29899 D | Coatomer subunit delta | COPD_MOUSE 1-511 
    29900 F M R | ADP-ribosylation factor 1 | ARF1_YEAST 1-181 
    29901 G K | Coatomer subunit gamma-1 | COPG1_MOUSE 1-874 
    29902 L Z | Coatomer subunit zeta-1 | COPZ1_MOUSE 1-177 
    29903  
    29904 
    29905 > hide #!25 models
    29906 
    29907 > show #!25 models
    29908 
    29909 > hide #!25 atoms
    29910 
    29911 > show #!25 cartoons
    29912 
    29913 > select add #25
    29914 
    29915 18970 atoms, 18952 bonds, 7 pseudobonds, 4746 residues, 2 models selected 
    29916 
    29917 > ui mousemode right "translate selected models"
    29918 
    29919 > view matrix models #25,1,0,0,172.93,0,1,0,-26.507,0,0,1,206.31
    29920 
    29921 > view matrix models #25,1,0,0,179.54,0,1,0,116.98,0,0,1,131.95
    29922 
    29923 > view matrix models #25,1,0,0,244.71,0,1,0,166.5,0,0,1,128.83
    29924 
    29925 > ui mousemode right "rotate selected models"
    29926 
    29927 > view matrix models
    29928 > #25,0.90934,0.39096,0.14229,191.9,0.36842,-0.91558,0.16119,334.4,0.1933,-0.094151,-0.97661,347.05
    29929 
    29930 > view matrix models
    29931 > #25,0.49924,0.4639,0.73182,160.19,0.54167,-0.82631,0.15427,305.6,0.67628,0.31938,-0.66381,208.92
    29932 
    29933 > ui mousemode right "translate selected models"
    29934 
    29935 > view matrix models
    29936 > #25,0.49924,0.4639,0.73182,183.77,0.54167,-0.82631,0.15427,316.9,0.67628,0.31938,-0.66381,272.8
    29937 
    29938 > view matrix models
    29939 > #25,0.49924,0.4639,0.73182,129.3,0.54167,-0.82631,0.15427,311.31,0.67628,0.31938,-0.66381,282.67
    29940 
    29941 > ui mousemode right "rotate selected models"
    29942 
    29943 > view matrix models
    29944 > #25,0.96042,-0.17233,-0.21885,263.85,-0.20654,-0.96773,-0.14434,444.68,-0.18692,0.18383,-0.96502,428.26
    29945 
    29946 > ui tool show "Fit in Map"
    29947 
    29948 > fitmap #25 inMap #1
    29949 
    29950 Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map
    29951 postprocess_20231221.mrc (#1) using 18970 atoms 
    29952 average map value = 0.002473, steps = 108 
    29953 shifted from previous position = 9.77 
    29954 rotated from previous position = 8.8 degrees 
    29955 atoms outside contour = 16052, contour level = 0.0033794 
    29956  
    29957 Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to
    29958 postprocess_20231221.mrc (#1) coordinates: 
    29959 Matrix rotation and translation 
    29960 0.98864984 -0.04299359 -0.14395503 131.62784376 
    29961 -0.07158428 -0.97722521 -0.19976632 331.34054902 
    29962 -0.13208781 0.20780386 -0.96921121 308.56082393 
    29963 Axis 0.99712807 -0.02903337 -0.06994766 
    29964 Axis point 0.00000000 151.24482933 176.20665529 
    29965 Rotation angle (degrees) 168.20725919 
    29966 Shift along axis 100.04677794 
    29967  
    29968 
    29969 > view matrix models
    29970 > #25,-0.025335,0.99704,0.072538,207.04,0.95599,0.04538,-0.28986,219.77,-0.29229,0.062003,-0.95432,454.07
    29971 
    29972 > fitmap #25 inMap #1
    29973 
    29974 Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map
    29975 postprocess_20231221.mrc (#1) using 18970 atoms 
    29976 average map value = 0.002418, steps = 84 
    29977 shifted from previous position = 12 
    29978 rotated from previous position = 4.08 degrees 
    29979 atoms outside contour = 16464, contour level = 0.0033794 
    29980  
    29981 Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to
    29982 postprocess_20231221.mrc (#1) coordinates: 
    29983 Matrix rotation and translation 
    29984 -0.06293060 0.99182167 0.11103830 99.85964341 
    29985 0.96516350 0.08879327 -0.24612022 105.71410249 
    29986 -0.25396683 0.09168162 -0.96285790 328.58360677 
    29987 Axis 0.67825476 0.73287482 -0.05352555 
    29988 Axis point 29.96063731 0.00000000 167.00415032 
    29989 Rotation angle (degrees) 165.58030383 
    29990 Shift along axis 127.61786286 
    29991  
    29992 
    29993 > select subtract #25
    29994 
    29995 Nothing selected 
    29996 
    29997 > select #25/F
    29998 
    29999 635 atoms, 634 bonds, 159 residues, 1 model selected 
    30000 
    30001 > color sel hot pink
    30002 
    30003 > select #25/M
    30004 
    30005 635 atoms, 634 bonds, 159 residues, 1 model selected 
    30006 
    30007 > color sel hot pink
    30008 
    30009 > select #25/R
    30010 
    30011 635 atoms, 634 bonds, 159 residues, 1 model selected 
    30012 
    30013 > color sel hot pink
    30014 
    30015 > select #25/A
    30016 
    30017 3251 atoms, 3250 bonds, 813 residues, 1 model selected 
    30018 
    30019 > color sel blue
    30020 
    30021 > select #25/B
    30022 
    30023 3198 atoms, 3193 bonds, 4 pseudobonds, 800 residues, 2 models selected 
    30024 
    30025 > color sel dark green
    30026 
    30027 > select #25/C
    30028 
    30029 3371 atoms, 3370 bonds, 843 residues, 1 model selected 
    30030 
    30031 > color sel dark cyan
    30032 
    30033 > select #25/D
    30034 
    30035 706 atoms, 704 bonds, 1 pseudobond, 177 residues, 2 models selected 
    30036 
    30037 > color sel sienna
    30038 
    30039 > select #25/L
    30040 
    30041 555 atoms, 554 bonds, 139 residues, 1 model selected 
    30042 
    30043 > color sel yellow
    30044 
    30045 > select #25/Z
    30046 
    30047 555 atoms, 554 bonds, 139 residues, 1 model selected 
    30048 
    30049 > color sel yellow
    30050 
    30051 > select add #25
    30052 
    30053 18970 atoms, 18952 bonds, 7 pseudobonds, 4746 residues, 2 models selected 
    30054 
    30055 > select subtract #25
    30056 
    30057 Nothing selected 
    30058 
    30059 > select add #25
    30060 
    30061 18970 atoms, 18952 bonds, 7 pseudobonds, 4746 residues, 2 models selected 
    30062 
    30063 > show #3 models
    30064 
    30065 > view matrix models
    30066 > #25,0.01455,-0.060029,-0.99809,456.44,0.66933,-0.74097,0.054323,313.78,-0.74282,-0.66884,0.029398,470.18
    30067 
    30068 > select subtract #25
    30069 
    30070 Nothing selected 
    30071 
    30072 > select add #25
    30073 
    30074 18970 atoms, 18952 bonds, 7 pseudobonds, 4746 residues, 2 models selected 
    30075 
    30076 > view matrix models
    30077 > #25,0.67758,0.73257,-0.065061,182,0.23949,-0.13614,0.96131,184.56,0.69537,-0.66694,-0.26769,346.41
    30078 
    30079 > fitmap #25 inMap #1
    30080 
    30081 Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map
    30082 postprocess_20231221.mrc (#1) using 18970 atoms 
    30083 average map value = 0.002096, steps = 188 
    30084 shifted from previous position = 3.5 
    30085 rotated from previous position = 9.88 degrees 
    30086 atoms outside contour = 16648, contour level = 0.0033794 
    30087  
    30088 Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to
    30089 postprocess_20231221.mrc (#1) coordinates: 
    30090 Matrix rotation and translation 
    30091 0.67668396 0.73273835 -0.07206466 69.55834155 
    30092 0.36327897 -0.24714017 0.89830402 75.35116448 
    30093 0.64041174 -0.63404750 -0.43342422 254.15816540 
    30094 Axis -0.88585237 -0.41188259 -0.21358446 
    30095 Axis point 0.00000000 93.91308587 113.87349788 
    30096 Rotation angle (degrees) 120.12844703 
    30097 Shift along axis -146.93848782 
    30098  
    30099 
    30100 > ui mousemode right "translate selected models"
    30101 
    30102 > view matrix models
    30103 > #25,0.67568,0.73393,-0.069377,237.36,0.35858,-0.24497,0.90078,57.103,0.64411,-0.63352,-0.42869,411.75
    30104 
    30105 > view matrix models
    30106 > #25,0.67568,0.73393,-0.069377,166.37,0.35858,-0.24497,0.90078,2.138,0.64411,-0.63352,-0.42869,474.72
    30107 
    30108 > view matrix models
    30109 > #25,0.67568,0.73393,-0.069377,205.85,0.35858,-0.24497,0.90078,-26.501,0.64411,-0.63352,-0.42869,507.68
    30110 
    30111 > ui mousemode right "rotate selected models"
    30112 
    30113 > view matrix models
    30114 > #25,0.25988,0.36598,-0.8936,390.27,-0.5621,0.80979,0.16818,34.201,0.78518,0.45858,0.41616,265.23
    30115 
    30116 > select subtract #25
    30117 
    30118 Nothing selected 
    30119 
    30120 > select #25/D
    30121 
    30122 706 atoms, 704 bonds, 1 pseudobond, 177 residues, 2 models selected 
    30123 
    30124 > select #25/A
    30125 
    30126 3251 atoms, 3250 bonds, 813 residues, 1 model selected 
    30127 
    30128 > select #25/B
    30129 
    30130 3198 atoms, 3193 bonds, 4 pseudobonds, 800 residues, 2 models selected 
    30131 
    30132 > select #25/C
    30133 
    30134 3371 atoms, 3370 bonds, 843 residues, 1 model selected 
    30135 
    30136 > color sel cyan
    30137 
    30138 > select #25/D
    30139 
    30140 706 atoms, 704 bonds, 1 pseudobond, 177 residues, 2 models selected 
    30141 
    30142 > select #25/G
    30143 
    30144 3190 atoms, 3188 bonds, 1 pseudobond, 798 residues, 2 models selected 
    30145 
    30146 > color sel lime green
    30147 
    30148 > select #25/K
    30149 
    30150 2239 atoms, 2237 bonds, 1 pseudobond, 560 residues, 2 models selected 
    30151 
    30152 > color sel lime green
    30153 
    30154 > hide #3 models
    30155 
    30156 > show #3 models
    30157 
    30158 > select add #25
    30159 
    30160 18970 atoms, 18952 bonds, 7 pseudobonds, 4746 residues, 2 models selected 
    30161 
    30162 > select subtract #25
    30163 
    30164 Nothing selected 
    30165 
    30166 > select add #25
    30167 
    30168 18970 atoms, 18952 bonds, 7 pseudobonds, 4746 residues, 2 models selected 
    30169 
    30170 > view matrix models
    30171 > #25,0.28613,0.38156,-0.87894,383.85,-0.48279,0.84976,0.21173,15.732,0.82767,0.36376,0.42736,270.51
    30172 
    30173 > ui mousemode right "translate selected models"
    30174 
    30175 > view matrix models
    30176 > #25,0.28613,0.38156,-0.87894,307.95,-0.48279,0.84976,0.21173,128.43,0.82767,0.36376,0.42736,63.058
    30177 
    30178 > view matrix models
    30179 > #25,0.28613,0.38156,-0.87894,346.74,-0.48279,0.84976,0.21173,263.05,0.82767,0.36376,0.42736,171.48
    30180 
    30181 > ui mousemode right "rotate selected models"
    30182 
    30183 > view matrix models
    30184 > #25,0.28084,0.80046,-0.52952,257.34,-0.67529,0.55685,0.48363,287.48,0.68199,0.22176,0.69693,173.16
    30185 
    30186 > view matrix models
    30187 > #25,0.059471,0.97884,0.19578,176.74,-0.86514,-0.047299,0.49929,378.08,0.49799,-0.19907,0.84403,226.23
    30188 
    30189 > view matrix models
    30190 > #25,-0.25415,0.43249,-0.86507,398.41,-0.83663,-0.54707,-0.027707,495.03,-0.48524,0.71671,0.50088,265.28
    30191 
    30192 > hide #3 models
    30193 
    30194 > show #7 models
    30195 
    30196 > view matrix models
    30197 > #25,0.044164,0.83121,-0.5542,282.53,-0.87692,-0.2335,-0.4201,507.62,-0.4786,0.50455,0.7186,264.55
    30198 
    30199 > view matrix models
    30200 > #25,-0.31708,0.78054,-0.53872,326.39,-0.88489,-0.44785,-0.12805,500.16,-0.34121,0.43611,0.8327,244.4
    30201 
    30202 > fitmap #25 inMap #1
    30203 
    30204 Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map
    30205 postprocess_20231221.mrc (#1) using 18970 atoms 
    30206 average map value = 0.004218, steps = 352 
    30207 shifted from previous position = 12.1 
    30208 rotated from previous position = 32.7 degrees 
    30209 atoms outside contour = 9666, contour level = 0.0033794 
    30210  
    30211 Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to
    30212 postprocess_20231221.mrc (#1) coordinates: 
    30213 Matrix rotation and translation 
    30214 -0.53574835 0.84388736 -0.02877183 165.88776143 
    30215 -0.84419525 -0.53602985 -0.00252343 370.77841388 
    30216 -0.01755205 0.02293712 0.99958281 112.96642618 
    30217 Axis 0.01508047 -0.00664556 -0.99986420 
    30218 Axis point 185.48326612 138.95820238 0.00000000 
    30219 Rotation angle (degrees) 122.41838510 
    30220 Shift along axis -112.91345026 
    30221  
    30222 
    30223 > hide #7 models
    30224 
    30225 > select subtract #25
    30226 
    30227 Nothing selected 
    30228 
    30229 > select #25/C
    30230 
    30231 3371 atoms, 3370 bonds, 843 residues, 1 model selected 
    30232 
    30233 > fitmap sel inMap #1
    30234 
    30235 Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map
    30236 postprocess_20231221.mrc (#1) using 3371 atoms 
    30237 average map value = 0.004368, steps = 72 
    30238 shifted from previous position = 0.567 
    30239 rotated from previous position = 4.82 degrees 
    30240 atoms outside contour = 1172, contour level = 0.0033794 
    30241  
    30242 Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to
    30243 postprocess_20231221.mrc (#1) coordinates: 
    30244 Matrix rotation and translation 
    30245 -0.47520712 0.87648107 -0.07719527 158.57604863 
    30246 -0.87870795 -0.47726261 -0.00962971 369.82561667 
    30247 -0.04528268 0.06325599 0.99696948 112.94642006 
    30248 Axis 0.04148324 -0.01816320 -0.99897409 
    30249 Axis point 191.06280682 135.30791259 0.00000000 
    30250 Rotation angle (degrees) 118.53856222 
    30251 Shift along axis -112.96951683 
    30252  
    30253 
    30254 > fitmap sel inMap #1
    30255 
    30256 Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map
    30257 postprocess_20231221.mrc (#1) using 3371 atoms 
    30258 average map value = 0.004368, steps = 48 
    30259 shifted from previous position = 0.058 
    30260 rotated from previous position = 0.0401 degrees 
    30261 atoms outside contour = 1176, contour level = 0.0033794 
    30262  
    30263 Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to
    30264 postprocess_20231221.mrc (#1) coordinates: 
    30265 Matrix rotation and translation 
    30266 -0.47544517 0.87640361 -0.07660664 158.52057680 
    30267 -0.87858084 -0.47749115 -0.00989406 369.90681967 
    30268 -0.04525018 0.06260104 0.99701229 112.97990255 
    30269 Axis 0.04126634 -0.01784902 -0.99898874 
    30270 Axis point 191.02675926 135.40435673 0.00000000 
    30271 Rotation angle (degrees) 118.55238261 
    30272 Shift along axis -112.92655935 
    30273  
    30274 
    30275 > select #25/A
    30276 
    30277 3251 atoms, 3250 bonds, 813 residues, 1 model selected 
    30278 
    30279 > fitmap sel inMap #1
    30280 
    30281 Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map
    30282 postprocess_20231221.mrc (#1) using 3251 atoms 
    30283 average map value = 0.003303, steps = 64 
    30284 shifted from previous position = 5.19 
    30285 rotated from previous position = 4.65 degrees 
    30286 atoms outside contour = 2052, contour level = 0.0033794 
    30287  
    30288 Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to
    30289 postprocess_20231221.mrc (#1) coordinates: 
    30290 Matrix rotation and translation 
    30291 -0.51473956 0.84718223 -0.13162612 174.81436834 
    30292 -0.85624995 -0.51574917 0.02896220 363.08006962 
    30293 -0.04334980 0.12761285 0.99087625 110.56112471 
    30294 Axis 0.05773878 -0.05166684 -0.99699387 
    30295 Axis point 191.22843747 127.46029174 0.00000000 
    30296 Rotation angle (degrees) 121.31925569 
    30297 Shift along axis -118.89439414 
    30298  
    30299 
    30300 > select #25/C
    30301 
    30302 3371 atoms, 3370 bonds, 843 residues, 1 model selected 
    30303 
    30304 > fitmap sel inMap #1
    30305 
    30306 Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map
    30307 postprocess_20231221.mrc (#1) using 3371 atoms 
    30308 average map value = 0.004368, steps = 76 
    30309 shifted from previous position = 5.71 
    30310 rotated from previous position = 4.63 degrees 
    30311 atoms outside contour = 1172, contour level = 0.0033794 
    30312  
    30313 Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to
    30314 postprocess_20231221.mrc (#1) coordinates: 
    30315 Matrix rotation and translation 
    30316 -0.47516299 0.87650032 -0.07724834 158.57912193 
    30317 -0.87873512 -0.47721455 -0.00953158 369.80308546 
    30318 -0.04521847 0.06335177 0.99696631 112.92997824 
    30319 Axis 0.04148076 -0.01822945 -0.99897299 
    30320 Axis point 191.06132364 135.28926761 0.00000000 
    30321 Rotation angle (degrees) 118.53565898 
    30322 Shift along axis -112.97732216 
    30323  
    30324 
    30325 > fitmap sel inMap #1
    30326 
    30327 Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map
    30328 postprocess_20231221.mrc (#1) using 3371 atoms 
    30329 average map value = 0.004368, steps = 64 
    30330 shifted from previous position = 0.00374 
    30331 rotated from previous position = 0.00725 degrees 
    30332 atoms outside contour = 1171, contour level = 0.0033794 
    30333  
    30334 Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to
    30335 postprocess_20231221.mrc (#1) coordinates: 
    30336 Matrix rotation and translation 
    30337 -0.47511100 0.87651900 -0.07735611 158.58195988 
    30338 -0.87875891 -0.47716993 -0.00957243 369.80985864 
    30339 -0.04530242 0.06342940 0.99695757 112.93294602 
    30340 Axis 0.04154706 -0.01824251 -0.99897000 
    30341 Axis point 191.07470904 135.28593923 0.00000000 
    30342 Rotation angle (degrees) 118.53279373 
    30343 Shift along axis -112.97426862 
    30344  
    30345 
    30346 > select #25/K
    30347 
    30348 2239 atoms, 2237 bonds, 1 pseudobond, 560 residues, 2 models selected 
    30349 
    30350 > fitmap sel inMap #1
    30351 
    30352 Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map
    30353 postprocess_20231221.mrc (#1) using 2239 atoms 
    30354 average map value = 0.005453, steps = 88 
    30355 shifted from previous position = 2.86 
    30356 rotated from previous position = 5.24 degrees 
    30357 atoms outside contour = 1101, contour level = 0.0033794 
    30358  
    30359 Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to
    30360 postprocess_20231221.mrc (#1) coordinates: 
    30361 Matrix rotation and translation 
    30362 -0.52861290 0.84867362 -0.01792962 162.26120912 
    30363 -0.84874757 -0.52807480 0.02765050 368.46631966 
    30364 0.01399807 0.02983414 0.99945683 106.78996296 
    30365 Axis 0.00128621 -0.01880619 -0.99982232 
    30366 Axis point 182.93199093 138.12732719 0.00000000 
    30367 Rotation angle (degrees) 121.91195324 
    30368 Shift along axis -113.49173322 
    30369  
    30370 
    30371 > select #25/K
    30372 
    30373 2239 atoms, 2237 bonds, 1 pseudobond, 560 residues, 2 models selected 
    30374 
    30375 > select #25/G
    30376 
    30377 3190 atoms, 3188 bonds, 1 pseudobond, 798 residues, 2 models selected 
    30378 
    30379 > fitmap sel inMap #1
    30380 
    30381 Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map
    30382 postprocess_20231221.mrc (#1) using 3190 atoms 
    30383 average map value = 0.005086, steps = 80 
    30384 shifted from previous position = 6.04 
    30385 rotated from previous position = 3.82 degrees 
    30386 atoms outside contour = 1594, contour level = 0.0033794 
    30387  
    30388 Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to
    30389 postprocess_20231221.mrc (#1) coordinates: 
    30390 Matrix rotation and translation 
    30391 -0.56555988 0.82461095 -0.01260167 168.08525898 
    30392 -0.82433303 -0.56569752 -0.02147934 374.09170490 
    30393 -0.02484084 -0.00175988 0.99968986 117.01268500 
    30394 Axis 0.01195766 0.00742169 -0.99990096 
    30395 Axis point 183.47113140 142.86489612 0.00000000 
    30396 Rotation angle (degrees) 124.45673518 
    30397 Shift along axis -112.21479764 
    30398  
    30399 
    30400 > select #25/F
    30401 
    30402 635 atoms, 634 bonds, 159 residues, 1 model selected 
    30403 
    30404 > fitmap sel inMap #1
    30405 
    30406 Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#25) to map
    30407 postprocess_20231221.mrc (#1) using 635 atoms 
    30408 average map value = 0.002828, steps = 88 
    30409 shifted from previous position = 12.4 
    30410 rotated from previous position = 12 degrees 
    30411 atoms outside contour = 508, contour level = 0.0033794 
    30412  
    30413 Position of 5nzr_COPI_coat_leaf_2017.cif (#25) relative to
    30414 postprocess_20231221.mrc (#1) coordinates: 
    30415 Matrix rotation and translation 
    30416 -0.39510325 0.91706351 -0.05373946 147.27708502 
    30417 -0.91853641 -0.39351912 0.03786221 369.07307876 
    30418 0.01357455 0.06432113 0.99783692 104.46501204 
    30419 Axis 0.01440314 -0.03664296 -0.99922462 
    30420 Axis point 194.55872287 133.56188379 0.00000000 
    30421 Rotation angle (degrees) 113.29046977 
    30422 Shift along axis -115.78668960 
    30423  
    30424 
    30425 > select add #25
    30426 
    30427 18970 atoms, 18952 bonds, 7 pseudobonds, 4746 residues, 2 models selected 
    30428 
    30429 > select subtract #25
    30430 
    30431 Nothing selected 
    30432 
    30433 > split #25 chains
    30434 
    30435 Split 5nzr_COPI_coat_leaf_2017.cif (#25) into 11 models 
    30436 Chain information for 5nzr_COPI_coat_leaf_2017.cif A #25.1 
    30437 --- 
    30438 Chain | Description 
    30439 A | No description available 
    30440  
    30441 Chain information for 5nzr_COPI_coat_leaf_2017.cif B #25.2 
    30442 --- 
    30443 Chain | Description 
    30444 B | No description available 
    30445  
    30446 Chain information for 5nzr_COPI_coat_leaf_2017.cif C #25.3 
    30447 --- 
    30448 Chain | Description 
    30449 C | No description available 
    30450  
    30451 Chain information for 5nzr_COPI_coat_leaf_2017.cif D #25.4 
    30452 --- 
    30453 Chain | Description 
    30454 D | No description available 
    30455  
    30456 Chain information for 5nzr_COPI_coat_leaf_2017.cif F #25.5 
    30457 --- 
    30458 Chain | Description 
    30459 F | No description available 
    30460  
    30461 Chain information for 5nzr_COPI_coat_leaf_2017.cif G #25.6 
    30462 --- 
    30463 Chain | Description 
    30464 G | No description available 
    30465  
    30466 Chain information for 5nzr_COPI_coat_leaf_2017.cif K #25.7 
    30467 --- 
    30468 Chain | Description 
    30469 K | No description available 
    30470  
    30471 Chain information for 5nzr_COPI_coat_leaf_2017.cif L #25.8 
    30472 --- 
    30473 Chain | Description 
    30474 L | No description available 
    30475  
    30476 Chain information for 5nzr_COPI_coat_leaf_2017.cif M #25.9 
    30477 --- 
    30478 Chain | Description 
    30479 M | No description available 
    30480  
    30481 Chain information for 5nzr_COPI_coat_leaf_2017.cif R #25.10 
    30482 --- 
    30483 Chain | Description 
    30484 R | No description available 
    30485  
    30486 Chain information for 5nzr_COPI_coat_leaf_2017.cif Z #25.11 
    30487 --- 
    30488 Chain | Description 
    30489 Z | No description available 
    30490  
    30491 
    30492 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    30493 > dataset/Chimera sessions/20240212_leaf_fitting_v3.cxs"
    30494 
    30495 > hide #!25 models
    30496 
    30497 > open "/Users/becca/Desktop/Postdoc/Structure files/COPI
    30498 > structures/3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif"
    30499 
    30500 Summary of feedback from opening /Users/becca/Desktop/Postdoc/Structure
    30501 files/COPI structures/3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif 
    30502 --- 
    30503 note | Fetching CCD GNP from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/P/GNP/GNP.cif 
    30504  
    30505 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif title: 
    30506 Crystal Structure of Arf1 Bound to the gamma/zeta-COP Core Complex [more
    30507 info...] 
    30508  
    30509 Chain information for 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif #26 
    30510 --- 
    30511 Chain | Description | UniProt 
    30512 A D | ADP-ribosylation factor 1 | ARF1_YEAST 18-181 
    30513 B E | Coatomer subunit gamma | COPG_BOVIN 1-355 
    30514 C F | Coatomer subunit zeta-1 | COPZ1_BOVIN 1-153 
    30515  
    30516 Non-standard residues in 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif #26 
    30517 --- 
    30518 GNP — phosphoaminophosphonic acid-guanylate ester 
    30519 MG — magnesium ion 
    30520  
    30521 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif mmCIF Assemblies 
    30522 --- 
    30523 1| software_defined_assembly 
    30524 2| software_defined_assembly 
    30525  
    30526 
    30527 > hide #!26 models
    30528 
    30529 > show #!26 models
    30530 
    30531 > hide #!26 atoms
    30532 
    30533 > show #!26 cartoons
    30534 
    30535 > select add #26
    30536 
    30537 8970 atoms, 9117 bonds, 11 pseudobonds, 1126 residues, 3 models selected 
    30538 
    30539 > view matrix models
    30540 > #26,0.5277,0.75349,-0.39216,69.779,-0.81002,0.58537,0.034737,-10.163,0.25573,0.29932,0.91924,16.02
    30541 
    30542 > ui mousemode right "translate selected models"
    30543 
    30544 > view matrix models
    30545 > #26,0.5277,0.75349,-0.39216,490.52,-0.81002,0.58537,0.034737,254.15,0.25573,0.29932,0.91924,-22.305
    30546 
    30547 > view matrix models
    30548 > #26,0.5277,0.75349,-0.39216,219.19,-0.81002,0.58537,0.034737,382.39,0.25573,0.29932,0.91924,134.56
    30549 
    30550 > view matrix models
    30551 > #26,0.5277,0.75349,-0.39216,320.35,-0.81002,0.58537,0.034737,463.15,0.25573,0.29932,0.91924,332.64
    30552 
    30553 > view matrix models
    30554 > #26,0.5277,0.75349,-0.39216,388.13,-0.81002,0.58537,0.034737,370.75,0.25573,0.29932,0.91924,351.92
    30555 
    30556 > select subtract #26
    30557 
    30558 Nothing selected 
    30559 
    30560 > select #26/A
    30561 
    30562 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected 
    30563 
    30564 > color sel hot pink
    30565 
    30566 > hide #!1 models
    30567 
    30568 > select #26/D
    30569 
    30570 1306 atoms, 1331 bonds, 4 pseudobonds, 161 residues, 2 models selected 
    30571 
    30572 > color sel hot pink
    30573 
    30574 > select #26/C
    30575 
    30576 1128 atoms, 1146 bonds, 140 residues, 1 model selected 
    30577 
    30578 > color sel yellow
    30579 
    30580 > select #26/F
    30581 
    30582 1128 atoms, 1146 bonds, 140 residues, 1 model selected 
    30583 
    30584 > color sel yellow
    30585 
    30586 > select #26/B
    30587 
    30588 2069 atoms, 2100 bonds, 2 pseudobonds, 264 residues, 2 models selected 
    30589 
    30590 > color sel lime green
    30591 
    30592 > select #26/E
    30593 
    30594 2033 atoms, 2063 bonds, 2 pseudobonds, 260 residues, 2 models selected 
    30595 
    30596 > color sel lime green
    30597 
    30598 > select add #26
    30599 
    30600 8970 atoms, 9117 bonds, 11 pseudobonds, 1126 residues, 3 models selected 
    30601 
    30602 > select subtract #26
    30603 
    30604 Nothing selected 
    30605 
    30606 > show #!1 models
    30607 
    30608 > show #10 models
    30609 
    30610 > hide #!26 models
    30611 
    30612 > hide #10 models
    30613 
    30614 > show #10 models
    30615 
    30616 > show #!26 models
    30617 
    30618 > select add #26
    30619 
    30620 8970 atoms, 9117 bonds, 11 pseudobonds, 1126 residues, 3 models selected 
    30621 
    30622 > view matrix models
    30623 > #26,0.5277,0.75349,-0.39216,405.68,-0.81002,0.58537,0.034737,423.29,0.25573,0.29932,0.91924,314.52
    30624 
    30625 > view matrix models
    30626 > #26,0.5277,0.75349,-0.39216,390.94,-0.81002,0.58537,0.034737,414.92,0.25573,0.29932,0.91924,300.71
    30627 
    30628 > view matrix models
    30629 > #26,0.5277,0.75349,-0.39216,387.65,-0.81002,0.58537,0.034737,411.98,0.25573,0.29932,0.91924,309.59
    30630 
    30631 > split #26 chains
    30632 
    30633 Split 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif (#26) into 6 models 
    30634 Chain information for 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A #26.1 
    30635 --- 
    30636 Chain | Description 
    30637 A | No description available 
    30638  
    30639 Chain information for 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B #26.2 
    30640 --- 
    30641 Chain | Description 
    30642 B | No description available 
    30643  
    30644 Chain information for 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C #26.3 
    30645 --- 
    30646 Chain | Description 
    30647 C | No description available 
    30648  
    30649 Chain information for 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif D #26.4 
    30650 --- 
    30651 Chain | Description 
    30652 D | No description available 
    30653  
    30654 Chain information for 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif E #26.5 
    30655 --- 
    30656 Chain | Description 
    30657 E | No description available 
    30658  
    30659 Chain information for 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif F #26.6 
    30660 --- 
    30661 Chain | Description 
    30662 F | No description available 
    30663  
    30664 
    30665 > hide #!26 models
    30666 
    30667 > show #!26 models
    30668 
    30669 > hide #!26.4 models
    30670 
    30671 > close #26.4
    30672 
    30673 > close #26.5
    30674 
    30675 > close #26.6
    30676 
    30677 > select add #26.1
    30678 
    30679 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected 
    30680 
    30681 > select add #26.2
    30682 
    30683 3375 atoms, 3431 bonds, 5 pseudobonds, 425 residues, 4 models selected 
    30684 
    30685 > select add #26.3
    30686 
    30687 4503 atoms, 4577 bonds, 5 pseudobonds, 565 residues, 5 models selected 
    30688 
    30689 > view matrix models
    30690 > #26.1,0.5277,0.75349,-0.39216,426.69,-0.81002,0.58537,0.034737,412.79,0.25573,0.29932,0.91924,272.48,#26.2,0.5277,0.75349,-0.39216,426.69,-0.81002,0.58537,0.034737,412.79,0.25573,0.29932,0.91924,272.48,#26.3,0.5277,0.75349,-0.39216,426.69,-0.81002,0.58537,0.034737,412.79,0.25573,0.29932,0.91924,272.48
    30691 
    30692 > hide #!1 models
    30693 
    30694 > view matrix models
    30695 > #26.1,0.5277,0.75349,-0.39216,424.99,-0.81002,0.58537,0.034737,407.1,0.25573,0.29932,0.91924,299.03,#26.2,0.5277,0.75349,-0.39216,424.99,-0.81002,0.58537,0.034737,407.1,0.25573,0.29932,0.91924,299.03,#26.3,0.5277,0.75349,-0.39216,424.99,-0.81002,0.58537,0.034737,407.1,0.25573,0.29932,0.91924,299.03
    30696 
    30697 > ui mousemode right "rotate selected models"
    30698 
    30699 > view matrix models
    30700 > #26.1,0.97843,-0.20567,-0.019332,362.38,0.19832,0.9614,-0.19075,417.76,0.057819,0.1828,0.98145,293.01,#26.2,0.97843,-0.20567,-0.019332,362.38,0.19832,0.9614,-0.19075,417.76,0.057819,0.1828,0.98145,293.01,#26.3,0.97843,-0.20567,-0.019332,362.38,0.19832,0.9614,-0.19075,417.76,0.057819,0.1828,0.98145,293.01
    30701 
    30702 > view matrix models
    30703 > #26.1,-0.96419,0.243,0.10625,412,-0.18031,-0.30681,-0.93454,368.07,-0.1945,-0.92023,0.33964,247.68,#26.2,-0.96419,0.243,0.10625,412,-0.18031,-0.30681,-0.93454,368.07,-0.1945,-0.92023,0.33964,247.68,#26.3,-0.96419,0.243,0.10625,412,-0.18031,-0.30681,-0.93454,368.07,-0.1945,-0.92023,0.33964,247.68
    30704 
    30705 > view matrix models
    30706 > #26.1,-0.46491,-0.45586,-0.75898,382.96,0.84312,0.033663,-0.53667,363.96,0.2702,-0.88941,0.36869,240.04,#26.2,-0.46491,-0.45586,-0.75898,382.96,0.84312,0.033663,-0.53667,363.96,0.2702,-0.88941,0.36869,240.04,#26.3,-0.46491,-0.45586,-0.75898,382.96,0.84312,0.033663,-0.53667,363.96,0.2702,-0.88941,0.36869,240.04
    30707 
    30708 > ui mousemode right "translate selected models"
    30709 
    30710 > view matrix models
    30711 > #26.1,-0.46491,-0.45586,-0.75898,317.7,0.84312,0.033663,-0.53667,369.45,0.2702,-0.88941,0.36869,225.13,#26.2,-0.46491,-0.45586,-0.75898,317.7,0.84312,0.033663,-0.53667,369.45,0.2702,-0.88941,0.36869,225.13,#26.3,-0.46491,-0.45586,-0.75898,317.7,0.84312,0.033663,-0.53667,369.45,0.2702,-0.88941,0.36869,225.13
    30712 
    30713 > ui mousemode right "rotate selected models"
    30714 
    30715 > view matrix models
    30716 > #26.1,0.45164,0.34272,-0.82375,352.65,-0.58768,0.80897,0.01436,423.44,0.6713,0.47761,0.56678,293.68,#26.2,0.45164,0.34272,-0.82375,352.65,-0.58768,0.80897,0.01436,423.44,0.6713,0.47761,0.56678,293.68,#26.3,0.45164,0.34272,-0.82375,352.65,-0.58768,0.80897,0.01436,423.44,0.6713,0.47761,0.56678,293.68
    30717 
    30718 > view matrix models
    30719 > #26.1,0.073239,0.58986,-0.80418,373.62,0.73413,-0.57767,-0.35686,331.44,-0.67505,-0.56423,-0.47534,273.5,#26.2,0.073239,0.58986,-0.80418,373.62,0.73413,-0.57767,-0.35686,331.44,-0.67505,-0.56423,-0.47534,273.5,#26.3,0.073239,0.58986,-0.80418,373.62,0.73413,-0.57767,-0.35686,331.44,-0.67505,-0.56423,-0.47534,273.5
    30720 
    30721 > show #5 models
    30722 
    30723 > hide #5 models
    30724 
    30725 > show #6 models
    30726 
    30727 > show #!9 models
    30728 
    30729 > view matrix models
    30730 > #26.1,0.037974,0.8909,-0.4526,383.45,0.91974,-0.20824,-0.33273,349.88,-0.39068,-0.40364,-0.82731,287.23,#26.2,0.037974,0.8909,-0.4526,383.45,0.91974,-0.20824,-0.33273,349.88,-0.39068,-0.40364,-0.82731,287.23,#26.3,0.037974,0.8909,-0.4526,383.45,0.91974,-0.20824,-0.33273,349.88,-0.39068,-0.40364,-0.82731,287.23
    30731 
    30732 > ui mousemode right "translate selected models"
    30733 
    30734 > view matrix models
    30735 > #26.1,0.037974,0.8909,-0.4526,445.91,0.91974,-0.20824,-0.33273,303.39,-0.39068,-0.40364,-0.82731,286.61,#26.2,0.037974,0.8909,-0.4526,445.91,0.91974,-0.20824,-0.33273,303.39,-0.39068,-0.40364,-0.82731,286.61,#26.3,0.037974,0.8909,-0.4526,445.91,0.91974,-0.20824,-0.33273,303.39,-0.39068,-0.40364,-0.82731,286.61
    30736 
    30737 > view matrix models
    30738 > #26.1,0.037974,0.8909,-0.4526,439.11,0.91974,-0.20824,-0.33273,307.97,-0.39068,-0.40364,-0.82731,295.85,#26.2,0.037974,0.8909,-0.4526,439.11,0.91974,-0.20824,-0.33273,307.97,-0.39068,-0.40364,-0.82731,295.85,#26.3,0.037974,0.8909,-0.4526,439.11,0.91974,-0.20824,-0.33273,307.97,-0.39068,-0.40364,-0.82731,295.85
    30739 
    30740 > ui mousemode right "rotate selected models"
    30741 
    30742 > view matrix models
    30743 > #26.1,-0.89543,0.25326,-0.36615,416.35,0.20899,0.9653,0.1566,380.35,0.39311,0.063706,-0.91728,311.28,#26.2,-0.89543,0.25326,-0.36615,416.35,0.20899,0.9653,0.1566,380.35,0.39311,0.063706,-0.91728,311.28,#26.3,-0.89543,0.25326,-0.36615,416.35,0.20899,0.9653,0.1566,380.35,0.39311,0.063706,-0.91728,311.28
    30744 
    30745 > view matrix models
    30746 > #26.1,0.047267,0.99719,-0.058155,438.2,0.62825,0.015585,0.77786,300.81,0.77658,-0.073303,-0.62575,292.69,#26.2,0.047267,0.99719,-0.058155,438.2,0.62825,0.015585,0.77786,300.81,0.77658,-0.073303,-0.62575,292.69,#26.3,0.047267,0.99719,-0.058155,438.2,0.62825,0.015585,0.77786,300.81,0.77658,-0.073303,-0.62575,292.69
    30747 
    30748 > view matrix models
    30749 > #26.1,0.77259,0.19013,-0.60576,396.95,0.39113,0.60902,0.69001,341.55,0.50012,-0.77003,0.39616,229.56,#26.2,0.77259,0.19013,-0.60576,396.95,0.39113,0.60902,0.69001,341.55,0.50012,-0.77003,0.39616,229.56,#26.3,0.77259,0.19013,-0.60576,396.95,0.39113,0.60902,0.69001,341.55,0.50012,-0.77003,0.39616,229.56
    30750 
    30751 > ui mousemode right "translate selected models"
    30752 
    30753 > view matrix models
    30754 > #26.1,0.77259,0.19013,-0.60576,361.88,0.39113,0.60902,0.69001,352.33,0.50012,-0.77003,0.39616,257.47,#26.2,0.77259,0.19013,-0.60576,361.88,0.39113,0.60902,0.69001,352.33,0.50012,-0.77003,0.39616,257.47,#26.3,0.77259,0.19013,-0.60576,361.88,0.39113,0.60902,0.69001,352.33,0.50012,-0.77003,0.39616,257.47
    30755 
    30756 > view matrix models
    30757 > #26.1,0.77259,0.19013,-0.60576,361.63,0.39113,0.60902,0.69001,346.51,0.50012,-0.77003,0.39616,264.79,#26.2,0.77259,0.19013,-0.60576,361.63,0.39113,0.60902,0.69001,346.51,0.50012,-0.77003,0.39616,264.79,#26.3,0.77259,0.19013,-0.60576,361.63,0.39113,0.60902,0.69001,346.51,0.50012,-0.77003,0.39616,264.79
    30758 
    30759 > ui mousemode right "rotate selected models"
    30760 
    30761 > view matrix models
    30762 > #26.1,0.4891,-0.10273,-0.86616,353.6,0.76848,-0.41898,0.48363,286.53,-0.41259,-0.90216,-0.12598,277.47,#26.2,0.4891,-0.10273,-0.86616,353.6,0.76848,-0.41898,0.48363,286.53,-0.41259,-0.90216,-0.12598,277.47,#26.3,0.4891,-0.10273,-0.86616,353.6,0.76848,-0.41898,0.48363,286.53,-0.41259,-0.90216,-0.12598,277.47
    30763 
    30764 > ui mousemode right "translate selected models"
    30765 
    30766 > view matrix models
    30767 > #26.1,0.4891,-0.10273,-0.86616,353.73,0.76848,-0.41898,0.48363,291.02,-0.41259,-0.90216,-0.12598,271.9,#26.2,0.4891,-0.10273,-0.86616,353.73,0.76848,-0.41898,0.48363,291.02,-0.41259,-0.90216,-0.12598,271.9,#26.3,0.4891,-0.10273,-0.86616,353.73,0.76848,-0.41898,0.48363,291.02,-0.41259,-0.90216,-0.12598,271.9
    30768 
    30769 > view matrix models
    30770 > #26.1,0.4891,-0.10273,-0.86616,356.51,0.76848,-0.41898,0.48363,292.24,-0.41259,-0.90216,-0.12598,276.24,#26.2,0.4891,-0.10273,-0.86616,356.51,0.76848,-0.41898,0.48363,292.24,-0.41259,-0.90216,-0.12598,276.24,#26.3,0.4891,-0.10273,-0.86616,356.51,0.76848,-0.41898,0.48363,292.24,-0.41259,-0.90216,-0.12598,276.24
    30771 
    30772 > view matrix models
    30773 > #26.1,0.4891,-0.10273,-0.86616,353.33,0.76848,-0.41898,0.48363,285.52,-0.41259,-0.90216,-0.12598,275.67,#26.2,0.4891,-0.10273,-0.86616,353.33,0.76848,-0.41898,0.48363,285.52,-0.41259,-0.90216,-0.12598,275.67,#26.3,0.4891,-0.10273,-0.86616,353.33,0.76848,-0.41898,0.48363,285.52,-0.41259,-0.90216,-0.12598,275.67
    30774 
    30775 > ui mousemode right "rotate selected models"
    30776 
    30777 > view matrix models
    30778 > #26.1,0.798,-0.3484,-0.49174,326.24,0.6025,0.4796,0.63795,335.26,0.013581,-0.80536,0.59263,259.36,#26.2,0.798,-0.3484,-0.49174,326.24,0.6025,0.4796,0.63795,335.26,0.013581,-0.80536,0.59263,259.36,#26.3,0.798,-0.3484,-0.49174,326.24,0.6025,0.4796,0.63795,335.26,0.013581,-0.80536,0.59263,259.36
    30779 
    30780 > view matrix models
    30781 > #26.1,0.80191,-0.25129,-0.54202,332.98,0.5903,0.47312,0.65399,334.61,0.092098,-0.8444,0.52773,257.47,#26.2,0.80191,-0.25129,-0.54202,332.98,0.5903,0.47312,0.65399,334.61,0.092098,-0.8444,0.52773,257.47,#26.3,0.80191,-0.25129,-0.54202,332.98,0.5903,0.47312,0.65399,334.61,0.092098,-0.8444,0.52773,257.47
    30782 
    30783 > ui mousemode right "translate selected models"
    30784 
    30785 > view matrix models
    30786 > #26.1,0.80191,-0.25129,-0.54202,341.59,0.5903,0.47312,0.65399,350.85,0.092098,-0.8444,0.52773,258.32,#26.2,0.80191,-0.25129,-0.54202,341.59,0.5903,0.47312,0.65399,350.85,0.092098,-0.8444,0.52773,258.32,#26.3,0.80191,-0.25129,-0.54202,341.59,0.5903,0.47312,0.65399,350.85,0.092098,-0.8444,0.52773,258.32
    30787 
    30788 > hide #!9 models
    30789 
    30790 > view matrix models
    30791 > #26.1,0.80191,-0.25129,-0.54202,337.98,0.5903,0.47312,0.65399,350.92,0.092098,-0.8444,0.52773,260.48,#26.2,0.80191,-0.25129,-0.54202,337.98,0.5903,0.47312,0.65399,350.92,0.092098,-0.8444,0.52773,260.48,#26.3,0.80191,-0.25129,-0.54202,337.98,0.5903,0.47312,0.65399,350.92,0.092098,-0.8444,0.52773,260.48
    30792 
    30793 > ui mousemode right "rotate selected models"
    30794 
    30795 > view matrix models
    30796 > #26.1,0.84276,-0.097083,-0.52947,346.34,0.52714,-0.050334,0.84828,316.45,-0.109,-0.994,0.0087571,265.17,#26.2,0.84276,-0.097083,-0.52947,346.34,0.52714,-0.050334,0.84828,316.45,-0.109,-0.994,0.0087571,265.17,#26.3,0.84276,-0.097083,-0.52947,346.34,0.52714,-0.050334,0.84828,316.45,-0.109,-0.994,0.0087571,265.17
    30797 
    30798 > view matrix models
    30799 > #26.1,0.8967,-0.046603,-0.44017,347.14,0.44234,0.13053,0.8873,327.01,0.016103,-0.99035,0.13766,260.95,#26.2,0.8967,-0.046603,-0.44017,347.14,0.44234,0.13053,0.8873,327.01,0.016103,-0.99035,0.13766,260.95,#26.3,0.8967,-0.046603,-0.44017,347.14,0.44234,0.13053,0.8873,327.01,0.016103,-0.99035,0.13766,260.95
    30800 
    30801 > view matrix models
    30802 > #26.1,0.86269,-0.096518,-0.49643,345.79,0.48048,-0.14987,0.86411,310.91,-0.1578,-0.98398,-0.082914,267.9,#26.2,0.86269,-0.096518,-0.49643,345.79,0.48048,-0.14987,0.86411,310.91,-0.1578,-0.98398,-0.082914,267.9,#26.3,0.86269,-0.096518,-0.49643,345.79,0.48048,-0.14987,0.86411,310.91,-0.1578,-0.98398,-0.082914,267.9
    30803 
    30804 > view matrix models
    30805 > #26.1,0.73916,-0.64204,-0.20354,307.63,0.51086,0.3375,0.79064,340.63,-0.43893,-0.68839,0.57746,277.07,#26.2,0.73916,-0.64204,-0.20354,307.63,0.51086,0.3375,0.79064,340.63,-0.43893,-0.68839,0.57746,277.07,#26.3,0.73916,-0.64204,-0.20354,307.63,0.51086,0.3375,0.79064,340.63,-0.43893,-0.68839,0.57746,277.07
    30806 
    30807 > view matrix models
    30808 > #26.1,-0.2209,-0.8407,-0.4944,314.38,0.26146,-0.53941,0.80042,293.31,-0.9396,0.047549,0.33896,330.4,#26.2,-0.2209,-0.8407,-0.4944,314.38,0.26146,-0.53941,0.80042,293.31,-0.9396,0.047549,0.33896,330.4,#26.3,-0.2209,-0.8407,-0.4944,314.38,0.26146,-0.53941,0.80042,293.31,-0.9396,0.047549,0.33896,330.4
    30809 
    30810 > view matrix models
    30811 > #26.1,-0.8552,0.18934,-0.48247,384.81,-0.34938,0.47698,0.80649,362.59,0.38283,0.85828,-0.34176,373.24,#26.2,-0.8552,0.18934,-0.48247,384.81,-0.34938,0.47698,0.80649,362.59,0.38283,0.85828,-0.34176,373.24,#26.3,-0.8552,0.18934,-0.48247,384.81,-0.34938,0.47698,0.80649,362.59,0.38283,0.85828,-0.34176,373.24
    30812 
    30813 > hide #6 models
    30814 
    30815 > show #!9 models
    30816 
    30817 > view matrix models
    30818 > #26.1,-0.8404,0.022284,-0.5415,377.04,-0.17118,0.93709,0.30424,396.95,0.51422,0.34838,-0.78372,349.53,#26.2,-0.8404,0.022284,-0.5415,377.04,-0.17118,0.93709,0.30424,396.95,0.51422,0.34838,-0.78372,349.53,#26.3,-0.8404,0.022284,-0.5415,377.04,-0.17118,0.93709,0.30424,396.95,0.51422,0.34838,-0.78372,349.53
    30819 
    30820 > hide #!9 models
    30821 
    30822 > view matrix models
    30823 > #26.1,-0.070909,-0.96249,0.26188,290.22,0.48549,0.19605,0.85198,331.32,-0.87136,0.18756,0.45338,338.1,#26.2,-0.070909,-0.96249,0.26188,290.22,0.48549,0.19605,0.85198,331.32,-0.87136,0.18756,0.45338,338.1,#26.3,-0.070909,-0.96249,0.26188,290.22,0.48549,0.19605,0.85198,331.32,-0.87136,0.18756,0.45338,338.1
    30824 
    30825 > view matrix models
    30826 > #26.1,-0.86751,-0.49671,-0.026518,337.31,0.059229,-0.15608,0.98597,317.29,-0.49387,0.85377,0.16482,376.34,#26.2,-0.86751,-0.49671,-0.026518,337.31,0.059229,-0.15608,0.98597,317.29,-0.49387,0.85377,0.16482,376.34,#26.3,-0.86751,-0.49671,-0.026518,337.31,0.059229,-0.15608,0.98597,317.29,-0.49387,0.85377,0.16482,376.34
    30827 
    30828 > show #!9 models
    30829 
    30830 > hide #!26.2 models
    30831 
    30832 > show #!26.2 models
    30833 
    30834 > hide #!26.2 models
    30835 
    30836 > show #!26.2 models
    30837 
    30838 > view matrix models
    30839 > #26.1,-0.222,-0.0027303,-0.97504,379.79,0.81238,0.5525,-0.18651,374.81,0.53922,-0.83351,-0.12043,265.27,#26.2,-0.222,-0.0027303,-0.97504,379.79,0.81238,0.5525,-0.18651,374.81,0.53922,-0.83351,-0.12043,265.27,#26.3,-0.222,-0.0027303,-0.97504,379.79,0.81238,0.5525,-0.18651,374.81,0.53922,-0.83351,-0.12043,265.27
    30840 
    30841 > view matrix models
    30842 > #26.1,-0.27127,0.10151,-0.95713,386.11,0.76006,0.63271,-0.14832,379.45,0.59053,-0.76771,-0.24879,270.51,#26.2,-0.27127,0.10151,-0.95713,386.11,0.76006,0.63271,-0.14832,379.45,0.59053,-0.76771,-0.24879,270.51,#26.3,-0.27127,0.10151,-0.95713,386.11,0.76006,0.63271,-0.14832,379.45,0.59053,-0.76771,-0.24879,270.51
    30843 
    30844 > view matrix models
    30845 > #26.1,-0.26905,0.12773,-0.95462,387.49,0.75503,0.64332,-0.12672,379.73,0.59794,-0.75486,-0.26953,271.48,#26.2,-0.26905,0.12773,-0.95462,387.49,0.75503,0.64332,-0.12672,379.73,0.59794,-0.75486,-0.26953,271.48,#26.3,-0.26905,0.12773,-0.95462,387.49,0.75503,0.64332,-0.12672,379.73,0.59794,-0.75486,-0.26953,271.48
    30846 
    30847 > ui mousemode right "translate selected models"
    30848 
    30849 > view matrix models
    30850 > #26.1,-0.26905,0.12773,-0.95462,390.61,0.75503,0.64332,-0.12672,378.77,0.59794,-0.75486,-0.26953,284.76,#26.2,-0.26905,0.12773,-0.95462,390.61,0.75503,0.64332,-0.12672,378.77,0.59794,-0.75486,-0.26953,284.76,#26.3,-0.26905,0.12773,-0.95462,390.61,0.75503,0.64332,-0.12672,378.77,0.59794,-0.75486,-0.26953,284.76
    30851 
    30852 > ui mousemode right "rotate selected models"
    30853 
    30854 > view matrix models
    30855 > #26.1,-0.35988,0.15638,-0.9198,392.91,0.64052,0.75824,-0.1217,386.9,0.6784,-0.63294,-0.37304,292.66,#26.2,-0.35988,0.15638,-0.9198,392.91,0.64052,0.75824,-0.1217,386.9,0.6784,-0.63294,-0.37304,292.66,#26.3,-0.35988,0.15638,-0.9198,392.91,0.64052,0.75824,-0.1217,386.9,0.6784,-0.63294,-0.37304,292.66
    30856 
    30857 > ui mousemode right "translate selected models"
    30858 
    30859 > view matrix models
    30860 > #26.1,-0.35988,0.15638,-0.9198,394.51,0.64052,0.75824,-0.1217,387.2,0.6784,-0.63294,-0.37304,294.27,#26.2,-0.35988,0.15638,-0.9198,394.51,0.64052,0.75824,-0.1217,387.2,0.6784,-0.63294,-0.37304,294.27,#26.3,-0.35988,0.15638,-0.9198,394.51,0.64052,0.75824,-0.1217,387.2,0.6784,-0.63294,-0.37304,294.27
    30861 
    30862 > view matrix models
    30863 > #26.1,-0.35988,0.15638,-0.9198,391.94,0.64052,0.75824,-0.1217,388.3,0.6784,-0.63294,-0.37304,294.67,#26.2,-0.35988,0.15638,-0.9198,391.94,0.64052,0.75824,-0.1217,388.3,0.6784,-0.63294,-0.37304,294.67,#26.3,-0.35988,0.15638,-0.9198,391.94,0.64052,0.75824,-0.1217,388.3,0.6784,-0.63294,-0.37304,294.67
    30864 
    30865 > show #6 models
    30866 
    30867 > hide #6 models
    30868 
    30869 > view matrix models
    30870 > #26.1,-0.35988,0.15638,-0.9198,392.75,0.64052,0.75824,-0.1217,388.07,0.6784,-0.63294,-0.37304,294.25,#26.2,-0.35988,0.15638,-0.9198,392.75,0.64052,0.75824,-0.1217,388.07,0.6784,-0.63294,-0.37304,294.25,#26.3,-0.35988,0.15638,-0.9198,392.75,0.64052,0.75824,-0.1217,388.07,0.6784,-0.63294,-0.37304,294.25
    30871 
    30872 > ui mousemode right "rotate selected models"
    30873 
    30874 > view matrix models
    30875 > #26.1,-0.40865,0.25097,-0.87751,397.72,0.68395,0.72082,-0.11235,385.23,0.60433,-0.64609,-0.46621,296.48,#26.2,-0.40865,0.25097,-0.87751,397.72,0.68395,0.72082,-0.11235,385.23,0.60433,-0.64609,-0.46621,296.48,#26.3,-0.40865,0.25097,-0.87751,397.72,0.68395,0.72082,-0.11235,385.23,0.60433,-0.64609,-0.46621,296.48
    30876 
    30877 > hide #10 models
    30878 
    30879 > show #10 models
    30880 
    30881 > view matrix models
    30882 > #26.1,-0.30992,0.28191,-0.90801,398.61,0.71685,0.69665,-0.028386,381.7,0.62456,-0.65971,-0.41799,294.45,#26.2,-0.30992,0.28191,-0.90801,398.61,0.71685,0.69665,-0.028386,381.7,0.62456,-0.65971,-0.41799,294.45,#26.3,-0.30992,0.28191,-0.90801,398.61,0.71685,0.69665,-0.028386,381.7,0.62456,-0.65971,-0.41799,294.45
    30883 
    30884 > ui mousemode right "translate selected models"
    30885 
    30886 > view matrix models
    30887 > #26.1,-0.30992,0.28191,-0.90801,400.27,0.71685,0.69665,-0.028386,381.49,0.62456,-0.65971,-0.41799,294.35,#26.2,-0.30992,0.28191,-0.90801,400.27,0.71685,0.69665,-0.028386,381.49,0.62456,-0.65971,-0.41799,294.35,#26.3,-0.30992,0.28191,-0.90801,400.27,0.71685,0.69665,-0.028386,381.49,0.62456,-0.65971,-0.41799,294.35
    30888 
    30889 > hide #10 models
    30890 
    30891 > show #10 models
    30892 
    30893 > hide #10 models
    30894 
    30895 > show #10 models
    30896 
    30897 > view matrix models
    30898 > #26.1,-0.30992,0.28191,-0.90801,399.38,0.71685,0.69665,-0.028386,381.71,0.62456,-0.65971,-0.41799,294.46,#26.2,-0.30992,0.28191,-0.90801,399.38,0.71685,0.69665,-0.028386,381.71,0.62456,-0.65971,-0.41799,294.46,#26.3,-0.30992,0.28191,-0.90801,399.38,0.71685,0.69665,-0.028386,381.71,0.62456,-0.65971,-0.41799,294.46
    30899 
    30900 > select subtract #26.2
    30901 
    30902 2434 atoms, 2477 bonds, 3 pseudobonds, 301 residues, 3 models selected 
    30903 
    30904 > select add #26.2
    30905 
    30906 4503 atoms, 4577 bonds, 5 pseudobonds, 565 residues, 5 models selected 
    30907 
    30908 > select subtract #26.2
    30909 
    30910 2434 atoms, 2477 bonds, 3 pseudobonds, 301 residues, 3 models selected 
    30911 
    30912 > select add #26.2
    30913 
    30914 4503 atoms, 4577 bonds, 5 pseudobonds, 565 residues, 5 models selected 
    30915 
    30916 > select subtract #26.2
    30917 
    30918 2434 atoms, 2477 bonds, 3 pseudobonds, 301 residues, 3 models selected 
    30919 
    30920 > hide #26.3 models
    30921 
    30922 > select subtract #26.3
    30923 
    30924 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected 
    30925 
    30926 > hide #!26.1 models
    30927 
    30928 > select add #26
    30929 
    30930 4503 atoms, 4577 bonds, 5 pseudobonds, 565 residues, 6 models selected 
    30931 
    30932 > select subtract #26.1
    30933 
    30934 3197 atoms, 3246 bonds, 2 pseudobonds, 404 residues, 4 models selected 
    30935 
    30936 > select subtract #26.3
    30937 
    30938 2069 atoms, 2100 bonds, 2 pseudobonds, 264 residues, 3 models selected 
    30939 
    30940 > select subtract #26.2
    30941 
    30942 1 model selected 
    30943 
    30944 > select add #26.2
    30945 
    30946 2069 atoms, 2100 bonds, 2 pseudobonds, 264 residues, 3 models selected 
    30947 
    30948 > select subtract #26.2
    30949 
    30950 1 model selected 
    30951 
    30952 > select add #26.2
    30953 
    30954 2069 atoms, 2100 bonds, 2 pseudobonds, 264 residues, 3 models selected 
    30955 
    30956 > select add #26.1
    30957 
    30958 3375 atoms, 3431 bonds, 5 pseudobonds, 425 residues, 5 models selected 
    30959 
    30960 > select add #26.3
    30961 
    30962 4503 atoms, 4577 bonds, 5 pseudobonds, 565 residues, 6 models selected 
    30963 
    30964 > view matrix models #26,1,0,0,4.2091,0,1,0,1.5586,0,0,1,0.98728
    30965 
    30966 > ui mousemode right "rotate selected models"
    30967 
    30968 > view matrix models
    30969 > #26,0.99292,0.046255,-0.1094,26.419,-0.057538,0.99308,-0.10234,57.876,0.10391,0.10791,0.98872,-69.757
    30970 
    30971 > ui mousemode right "translate selected models"
    30972 
    30973 > view matrix models
    30974 > #26,0.99292,0.046255,-0.1094,25.7,-0.057538,0.99308,-0.10234,57.766,0.10391,0.10791,0.98872,-69.773
    30975 
    30976 > ui mousemode right "rotate selected models"
    30977 
    30978 > view matrix models
    30979 > #26,0.9943,0.090076,-0.05699,-7.6676,-0.096073,0.98893,-0.11311,76.212,0.04617,0.11794,0.99195,-54.31
    30980 
    30981 > ui mousemode right "translate selected models"
    30982 
    30983 > view matrix models
    30984 > #26,0.9943,0.090076,-0.05699,-8.0235,-0.096073,0.98893,-0.11311,76.44,0.04617,0.11794,0.99195,-53.214
    30985 
    30986 > ui mousemode right "rotate selected models"
    30987 
    30988 > view matrix models
    30989 > #26,0.98874,0.14081,0.050686,-59.702,-0.13797,0.98886,-0.055852,72.11,-0.057986,0.048231,0.99715,6.0638
    30990 
    30991 > ui mousemode right "translate selected models"
    30992 
    30993 > view matrix models
    30994 > #26,0.98874,0.14081,0.050686,-59.111,-0.13797,0.98886,-0.055852,72.269,-0.057986,0.048231,0.99715,5.6766
    30995 
    30996 > show #26.3 models
    30997 
    30998 > hide #26.3 models
    30999 
    31000 > show #26.3 models
    31001 
    31002 > hide #26.3 models
    31003 
    31004 > select subtract #26.3
    31005 
    31006 3375 atoms, 3431 bonds, 5 pseudobonds, 425 residues, 5 models selected 
    31007 
    31008 > select subtract #26.1
    31009 
    31010 2069 atoms, 2100 bonds, 2 pseudobonds, 264 residues, 3 models selected 
    31011 
    31012 > select add #26
    31013 
    31014 4503 atoms, 4577 bonds, 5 pseudobonds, 565 residues, 6 models selected 
    31015 
    31016 > select subtract #26
    31017 
    31018 Nothing selected 
    31019 
    31020 > hide #!26.2 models
    31021 
    31022 > show #!26.2 models
    31023 
    31024 > hide #!26.2 models
    31025 
    31026 > show #!1 models
    31027 
    31028 > hide #!9 models
    31029 
    31030 > hide #10 models
    31031 
    31032 > show #!26.2 models
    31033 
    31034 > fitmap #26.2 inMap #1
    31035 
    31036 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) to map
    31037 postprocess_20231221.mrc (#1) using 2069 atoms 
    31038 average map value = 0.005974, steps = 84 
    31039 shifted from previous position = 3.66 
    31040 rotated from previous position = 6.23 degrees 
    31041 atoms outside contour = 720, contour level = 0.0033794 
    31042  
    31043 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) relative to
    31044 postprocess_20231221.mrc (#1) coordinates: 
    31045 Matrix rotation and translation 
    31046 -0.25151266 0.19854926 -0.94726953 280.15790271 
    31047 0.70120494 0.71200202 -0.03694244 273.62980535 
    31048 0.66712293 -0.67352156 -0.31830125 179.25904604 
    31049 Axis -0.35234390 -0.89355952 0.27821783 
    31050 Axis point -6.15326635 0.00000000 194.77142939 
    31051 Rotation angle (degrees) 115.39814881 
    31052 Shift along axis -293.34338391 
    31053  
    31054 
    31055 > hide #!26.2 models
    31056 
    31057 > show #26.3 models
    31058 
    31059 > fitmap #26.3 inMap #1
    31060 
    31061 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) to map
    31062 postprocess_20231221.mrc (#1) using 1128 atoms 
    31063 average map value = 0.004508, steps = 72 
    31064 shifted from previous position = 4.99 
    31065 rotated from previous position = 7.06 degrees 
    31066 atoms outside contour = 422, contour level = 0.0033794 
    31067  
    31068 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) relative to
    31069 postprocess_20231221.mrc (#1) coordinates: 
    31070 Matrix rotation and translation 
    31071 -0.24642181 0.18243493 -0.95183705 278.78686774 
    31072 0.71472521 0.69751812 -0.05134514 272.65638016 
    31073 0.65455645 -0.69295451 -0.30227453 177.98352930 
    31074 Axis -0.35451301 -0.88759210 0.29411016 
    31075 Axis point -9.04055568 0.00000000 197.28184806 
    31076 Rotation angle (degrees) 115.18795785 
    31077 Shift along axis -288.49445780 
    31078  
    31079 
    31080 > hide #26.3 models
    31081 
    31082 > show #!26.1 models
    31083 
    31084 > fitmap #26.1 inMap #1
    31085 
    31086 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#26.1) to map
    31087 postprocess_20231221.mrc (#1) using 1306 atoms 
    31088 average map value = 0.004381, steps = 88 
    31089 shifted from previous position = 4.09 
    31090 rotated from previous position = 9.86 degrees 
    31091 atoms outside contour = 492, contour level = 0.0033794 
    31092  
    31093 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#26.1) relative to
    31094 postprocess_20231221.mrc (#1) coordinates: 
    31095 Matrix rotation and translation 
    31096 -0.18671356 0.19708855 -0.96244176 280.99462623 
    31097 0.67999636 0.73299000 0.01818230 273.70447792 
    31098 0.70904371 -0.65106201 -0.27087867 179.37002260 
    31099 Axis -0.35901311 -0.89666089 0.25905373 
    31100 Axis point -12.36298520 0.00000000 195.35880618 
    31101 Rotation angle (degrees) 111.24158265 
    31102 Shift along axis -299.83438256 
    31103  
    31104 
    31105 > hide #!26.1 models
    31106 
    31107 > hide #!26 models
    31108 
    31109 > show #!26.1 models
    31110 
    31111 > show #!26.2 models
    31112 
    31113 > show #26.3 models
    31114 
    31115 > hide #!1 models
    31116 
    31117 > show #10 models
    31118 
    31119 > hide #10 models
    31120 
    31121 > show #10 models
    31122 
    31123 > hide #10 models
    31124 
    31125 > show #!9 models
    31126 
    31127 > hide #!9 models
    31128 
    31129 > show #!9 models
    31130 
    31131 > hide #!9 models
    31132 
    31133 > show #6 models
    31134 
    31135 > hide #6 models
    31136 
    31137 > show #6 models
    31138 
    31139 > hide #6 models
    31140 
    31141 > show #5 models
    31142 
    31143 > hide #5 models
    31144 
    31145 > show #5 models
    31146 
    31147 > hide #5 models
    31148 
    31149 > show #5 models
    31150 
    31151 > hide #5 models
    31152 
    31153 > show #5 models
    31154 
    31155 > hide #5 models
    31156 
    31157 > show #5 models
    31158 
    31159 > hide #5 models
    31160 
    31161 > show #5 models
    31162 
    31163 > hide #5 models
    31164 
    31165 > hide #!26 models
    31166 
    31167 > show #!25 models
    31168 
    31169 > hide #25.11 models
    31170 
    31171 > hide #25.10 models
    31172 
    31173 > hide #25.9 models
    31174 
    31175 > hide #25.8 models
    31176 
    31177 > hide #!25.7 models
    31178 
    31179 > hide #!25.6 models
    31180 
    31181 > hide #25.5 models
    31182 
    31183 > hide #!25.4 models
    31184 
    31185 > hide #25.3 models
    31186 
    31187 > hide #!25.2 models
    31188 
    31189 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    31190 > dataset/Chimera sessions/20240212_leaf_fitting_v4.cxs"
    31191 
    31192 > show #3 models
    31193 
    31194 > show #!1 models
    31195 
    31196 > hide #3 models
    31197 
    31198 > fitmap #25.1 inMap #1
    31199 
    31200 Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map
    31201 postprocess_20231221.mrc (#1) using 3251 atoms 
    31202 average map value = 0.003304, steps = 76 
    31203 shifted from previous position = 6.61 
    31204 rotated from previous position = 8.15 degrees 
    31205 atoms outside contour = 2052, contour level = 0.0033794 
    31206  
    31207 Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to
    31208 postprocess_20231221.mrc (#1) coordinates: 
    31209 Matrix rotation and translation 
    31210 -0.51570328 0.84654128 -0.13197720 175.00196838 
    31211 -0.85566106 -0.51671538 0.02914378 363.06707979 
    31212 -0.04352323 0.12795729 0.99082423 110.61591954 
    31213 Axis 0.05787500 -0.05180742 -0.99697867 
    31214 Axis point 191.18696526 127.45480887 0.00000000 
    31215 Rotation angle (degrees) 121.38574275 
    31216 Shift along axis -118.96304353 
    31217  
    31218 
    31219 > volume #1 level 0.003071
    31220 
    31221 > hide #25.1 models
    31222 
    31223 > show #25.1 models
    31224 
    31225 > show #3 models
    31226 
    31227 > hide #3 models
    31228 
    31229 > show #3 models
    31230 
    31231 > hide #3 models
    31232 
    31233 > show #3 models
    31234 
    31235 > hide #3 models
    31236 
    31237 > show #3 models
    31238 
    31239 > hide #!1 models
    31240 
    31241 > hide #3 models
    31242 
    31243 > show #3 models
    31244 
    31245 > hide #3 models
    31246 
    31247 > show #3 models
    31248 
    31249 > hide #3 models
    31250 
    31251 > show #3 models
    31252 
    31253 > hide #3 models
    31254 
    31255 > show #3 models
    31256 
    31257 > select add #25.1
    31258 
    31259 3251 atoms, 3250 bonds, 813 residues, 1 model selected 
    31260 
    31261 > select subtract #25.1
    31262 
    31263 Nothing selected 
    31264 
    31265 > select add #25.1
    31266 
    31267 3251 atoms, 3250 bonds, 813 residues, 1 model selected 
    31268 
    31269 > select subtract #25.1
    31270 
    31271 Nothing selected 
    31272 
    31273 > show #!1 models
    31274 
    31275 > hide #3 models
    31276 
    31277 > show #3 models
    31278 
    31279 > hide #3 models
    31280 
    31281 > show #3 models
    31282 
    31283 > select add #25.1
    31284 
    31285 3251 atoms, 3250 bonds, 813 residues, 1 model selected 
    31286 
    31287 > view matrix models
    31288 > #25.1,-0.51709,0.8453,-0.13446,287.41,-0.8545,-0.5189,0.023964,478.85,-0.049517,0.12729,0.99063,221.57
    31289 
    31290 > view matrix models
    31291 > #25.1,-0.51709,0.8453,-0.13446,289.02,-0.8545,-0.5189,0.023964,478.87,-0.049517,0.12729,0.99063,223.3
    31292 
    31293 > view matrix models
    31294 > #25.1,-0.51709,0.8453,-0.13446,289.82,-0.8545,-0.5189,0.023964,480.94,-0.049517,0.12729,0.99063,224.61
    31295 
    31296 > fitmap #25.1 inMap #1
    31297 
    31298 Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map
    31299 postprocess_20231221.mrc (#1) using 3251 atoms 
    31300 average map value = 0.003304, steps = 72 
    31301 shifted from previous position = 5.72 
    31302 rotated from previous position = 0.0289 degrees 
    31303 atoms outside contour = 1774, contour level = 0.0030713 
    31304  
    31305 Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to
    31306 postprocess_20231221.mrc (#1) coordinates: 
    31307 Matrix rotation and translation 
    31308 -0.51531842 0.84673508 -0.13223699 174.97340097 
    31309 -0.85588796 -0.51634064 0.02912268 363.05334011 
    31310 -0.04362014 0.12818750 0.99079021 110.60727657 
    31311 Axis 0.05800716 -0.05188938 -0.99696673 
    31312 Axis point 191.22444071 127.42113577 0.00000000 
    31313 Rotation angle (degrees) 121.36139660 
    31314 Shift along axis -118.96067676 
    31315  
    31316 
    31317 > view matrix models
    31318 > #25.1,-0.51671,0.8455,-0.13472,290.27,-0.85472,-0.51853,0.023944,478.36,-0.049614,0.12752,0.99059,225.17
    31319 
    31320 > view matrix models
    31321 > #25.1,-0.51671,0.8455,-0.13472,288.94,-0.85472,-0.51853,0.023944,479.27,-0.049614,0.12752,0.99059,223.88
    31322 
    31323 > ui mousemode right "rotate selected models"
    31324 
    31325 > view matrix models
    31326 > #25.1,-0.45653,0.83292,-0.31278,302.89,-0.87051,-0.49081,-0.036415,486.46,-0.18385,0.25565,0.94913,237.18
    31327 
    31328 > view matrix models
    31329 > #25.1,-0.49779,0.82837,-0.25692,301.69,-0.85509,-0.51829,-0.014326,483.69,-0.14502,0.21256,0.96633,233.09
    31330 
    31331 > view matrix models
    31332 > #25.1,-0.54342,0.83542,-0.082221,286.71,-0.83935,-0.53919,0.069007,473.48,0.013318,0.10651,0.99422,217.18
    31333 
    31334 > fitmap #25.1 inMap #1
    31335 
    31336 Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map
    31337 postprocess_20231221.mrc (#1) using 3251 atoms 
    31338 average map value = 0.003303, steps = 60 
    31339 shifted from previous position = 3.59 
    31340 rotated from previous position = 4.18 degrees 
    31341 atoms outside contour = 1781, contour level = 0.0030713 
    31342  
    31343 Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to
    31344 postprocess_20231221.mrc (#1) coordinates: 
    31345 Matrix rotation and translation 
    31346 -0.51505629 0.84701325 -0.13147459 174.85233957 
    31347 -0.85604854 -0.51609939 0.02867597 363.09628018 
    31348 -0.04356503 0.12731837 0.99090469 110.58957119 
    31349 Axis 0.05774709 -0.05146389 -0.99700388 
    31350 Axis point 191.21569735 127.49165061 0.00000000 
    31351 Rotation angle (degrees) 121.34066991 
    31352 Shift along axis -118.84736446 
    31353  
    31354 
    31355 > select add #25
    31356 
    31357 18970 atoms, 18952 bonds, 7 pseudobonds, 4746 residues, 16 models selected 
    31358 
    31359 > select subtract #25
    31360 
    31361 Nothing selected 
    31362 
    31363 > hide #25.1 models
    31364 
    31365 > hide #3 models
    31366 
    31367 > show #4 models
    31368 
    31369 > fitmap #4 inMap #1
    31370 
    31371 Fit molecule CopB_Q9JIF7.pdb (#4) to map postprocess_20231221.mrc (#1) using
    31372 7501 atoms 
    31373 average map value = 0.002923, steps = 104 
    31374 shifted from previous position = 0.0401 
    31375 rotated from previous position = 0.0432 degrees 
    31376 atoms outside contour = 4902, contour level = 0.0030713 
    31377  
    31378 Position of CopB_Q9JIF7.pdb (#4) relative to postprocess_20231221.mrc (#1)
    31379 coordinates: 
    31380 Matrix rotation and translation 
    31381 -0.04178861 -0.73263752 0.67933495 172.38956196 
    31382 -0.03794698 0.68060212 0.73166985 204.58398347 
    31383 -0.99840560 0.00479676 -0.05624279 236.24298737 
    31384 Axis -0.37162091 0.85776110 0.35516727 
    31385 Axis point 209.21418723 0.00000000 -39.77416060 
    31386 Rotation angle (degrees) 102.04703741 
    31387 Shift along axis 195.32639425 
    31388  
    31389 
    31390 > fitmap #4 inMap #1
    31391 
    31392 Fit molecule CopB_Q9JIF7.pdb (#4) to map postprocess_20231221.mrc (#1) using
    31393 7501 atoms 
    31394 average map value = 0.002923, steps = 64 
    31395 shifted from previous position = 0.021 
    31396 rotated from previous position = 0.0638 degrees 
    31397 atoms outside contour = 4911, contour level = 0.0030713 
    31398  
    31399 Position of CopB_Q9JIF7.pdb (#4) relative to postprocess_20231221.mrc (#1)
    31400 coordinates: 
    31401 Matrix rotation and translation 
    31402 -0.04153332 -0.73322783 0.67871344 172.38830087 
    31403 -0.03864426 0.67997019 0.73222071 204.57471491 
    31404 -0.99838950 0.00418318 -0.05657646 236.22842183 
    31405 Axis -0.37224512 0.85750164 0.35514012 
    31406 Axis point 209.31973663 0.00000000 -39.80649837 
    31407 Rotation angle (degrees) 102.06784558 
    31408 Shift along axis 195.14664218 
    31409  
    31410 
    31411 > show #!25.2 models
    31412 
    31413 > hide #4 models
    31414 
    31415 > show #4 models
    31416 
    31417 > hide #4 models
    31418 
    31419 > show #4 models
    31420 
    31421 > hide #4 models
    31422 
    31423 > show #4 models
    31424 
    31425 > fitmap #25.2 inMap #1
    31426 
    31427 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31428 postprocess_20231221.mrc (#1) using 3198 atoms 
    31429 average map value = 0.004743, steps = 2000 
    31430 shifted from previous position = 2.46 
    31431 rotated from previous position = 6.13 degrees 
    31432 atoms outside contour = 1278, contour level = 0.0030713 
    31433  
    31434 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31435 postprocess_20231221.mrc (#1) coordinates: 
    31436 Matrix rotation and translation 
    31437 -0.49442736 0.86623346 -0.07198031 164.49609954 
    31438 -0.86875419 -0.49517333 0.00833736 369.63869235 
    31439 -0.02842063 0.06665542 0.99737120 110.41166003 
    31440 Axis 0.03358341 -0.02508456 -0.99912107 
    31441 Axis point 190.62534040 134.54688866 0.00000000 
    31442 Rotation angle (degrees) 119.74328500 
    31443 Shift along axis -114.06249956 
    31444  
    31445 
    31446 > hide #4 models
    31447 
    31448 > show #4 models
    31449 
    31450 > hide #4 models
    31451 
    31452 > show #4 models
    31453 
    31454 > hide #!25.2 models
    31455 
    31456 > show #!25.2 models
    31457 
    31458 > select add #25.2
    31459 
    31460 3198 atoms, 3193 bonds, 4 pseudobonds, 800 residues, 2 models selected 
    31461 
    31462 > view matrix models
    31463 > #25.2,-0.46567,0.88192,-0.073296,271.78,-0.88478,-0.4623,0.058711,474.61,0.017894,0.09219,0.99558,214.64
    31464 
    31465 > view matrix models
    31466 > #25.2,-0.55363,0.8313,-0.04925,284.93,-0.82948,-0.55573,-0.055934,489.52,-0.073868,0.0098851,0.99722,233.82
    31467 
    31468 > fitmap #25.2 inMap #1
    31469 
    31470 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31471 postprocess_20231221.mrc (#1) using 3198 atoms 
    31472 average map value = 0.004821, steps = 244 
    31473 shifted from previous position = 0.916 
    31474 rotated from previous position = 5.51 degrees 
    31475 atoms outside contour = 1143, contour level = 0.0030713 
    31476  
    31477 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31478 postprocess_20231221.mrc (#1) coordinates: 
    31479 Matrix rotation and translation 
    31480 -0.49480240 0.86519279 -0.08131428 165.41453083 
    31481 -0.86827537 -0.49605252 0.00545632 369.30583029 
    31482 -0.03561538 0.07330299 0.99667357 111.45220029 
    31483 Axis 0.03909576 -0.02633339 -0.99888842 
    31484 Axis point 191.15498632 133.89450699 0.00000000 
    31485 Rotation angle (degrees) 119.80770683 
    31486 Shift along axis -114.58638176 
    31487  
    31488 
    31489 > fitmap #25.2 inMap #1
    31490 
    31491 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31492 postprocess_20231221.mrc (#1) using 3198 atoms 
    31493 average map value = 0.004764, steps = 2000 
    31494 shifted from previous position = 0.361 
    31495 rotated from previous position = 0.941 degrees 
    31496 atoms outside contour = 1209, contour level = 0.0030713 
    31497  
    31498 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31499 postprocess_20231221.mrc (#1) coordinates: 
    31500 Matrix rotation and translation 
    31501 -0.50397347 0.85977352 -0.08246348 167.59629738 
    31502 -0.86244191 -0.50611966 -0.00606848 370.88262237 
    31503 -0.04695391 0.06806161 0.99657560 113.48239203 
    31504 Axis 0.04299451 -0.02059510 -0.99886301 
    31505 Axis point 191.78983766 134.87081926 0.00000000 
    31506 Rotation angle (degrees) 120.44817291 
    31507 Shift along axis -113.78600849 
    31508  
    31509 
    31510 > view matrix models
    31511 > #25.2,-0.52732,0.84847,-0.04497,279.39,-0.84721,-0.52908,-0.047938,487.91,-0.064467,0.01282,0.99784,232.87
    31512 
    31513 > fitmap #25.2 inMap #1
    31514 
    31515 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31516 postprocess_20231221.mrc (#1) using 3198 atoms 
    31517 average map value = 0.004716, steps = 2000 
    31518 shifted from previous position = 1.33 
    31519 rotated from previous position = 3.97 degrees 
    31520 atoms outside contour = 1306, contour level = 0.0030713 
    31521  
    31522 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31523 postprocess_20231221.mrc (#1) coordinates: 
    31524 Matrix rotation and translation 
    31525 -0.49998814 0.86167462 -0.08676811 167.17452842 
    31526 -0.86494971 -0.50185844 0.00029869 370.68848982 
    31527 -0.04328793 0.07519939 0.99622848 113.29837933 
    31528 Axis 0.04332538 -0.02515057 -0.99874439 
    31529 Axis point 191.95191307 134.34120970 0.00000000 
    31530 Rotation angle (degrees) 120.18601978 
    31531 Shift along axis -115.23624630 
    31532  
    31533 
    31534 > fitmap #25.2 inMap #1
    31535 
    31536 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31537 postprocess_20231221.mrc (#1) using 3198 atoms 
    31538 average map value = 0.00482, steps = 1460 
    31539 shifted from previous position = 1.17 
    31540 rotated from previous position = 0.568 degrees 
    31541 atoms outside contour = 1142, contour level = 0.0030713 
    31542  
    31543 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31544 postprocess_20231221.mrc (#1) coordinates: 
    31545 Matrix rotation and translation 
    31546 -0.49481135 0.86517107 -0.08149067 165.44107902 
    31547 -0.86826309 -0.49607509 0.00535787 369.30747054 
    31548 -0.03579002 0.07340647 0.99665970 111.47256480 
    31549 Axis 0.03921271 -0.02633480 -0.99888380 
    31550 Axis point 191.17291252 133.88464128 0.00000000 
    31551 Rotation angle (degrees) 119.80920530 
    31552 Shift along axis -114.58638455 
    31553  
    31554 
    31555 > fitmap #25.2 inMap #1
    31556 
    31557 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31558 postprocess_20231221.mrc (#1) using 3198 atoms 
    31559 average map value = 0.00482, steps = 284 
    31560 shifted from previous position = 0.0185 
    31561 rotated from previous position = 0.0285 degrees 
    31562 atoms outside contour = 1142, contour level = 0.0030713 
    31563  
    31564 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31565 postprocess_20231221.mrc (#1) coordinates: 
    31566 Matrix rotation and translation 
    31567 -0.49470936 0.86523406 -0.08144115 165.39792504 
    31568 -0.86833929 -0.49593640 0.00582651 369.24411712 
    31569 -0.03534834 0.07360098 0.99666111 111.39932371 
    31570 Axis 0.03905162 -0.02655866 -0.99888418 
    31571 Axis point 191.13185436 133.85100747 0.00000000 
    31572 Rotation angle (degrees) 119.80121255 
    31573 Shift along axis -114.62259411 
    31574  
    31575 
    31576 > fitmap #25.2 inMap #1
    31577 
    31578 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31579 postprocess_20231221.mrc (#1) using 3198 atoms 
    31580 average map value = 0.004746, steps = 2000 
    31581 shifted from previous position = 0.694 
    31582 rotated from previous position = 0.66 degrees 
    31583 atoms outside contour = 1128, contour level = 0.0030713 
    31584  
    31585 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31586 postprocess_20231221.mrc (#1) coordinates: 
    31587 Matrix rotation and translation 
    31588 -0.49256507 0.86546488 -0.09137930 166.00008670 
    31589 -0.86954869 -0.49372383 0.01103833 368.07811210 
    31590 -0.03556285 0.08489585 0.99575497 110.89448300 
    31591 Axis 0.04250837 -0.03212492 -0.99857951 
    31592 Axis point 191.35857281 132.53582797 0.00000000 
    31593 Rotation angle (degrees) 119.68735605 
    31594 Shift along axis -115.50504323 
    31595  
    31596 
    31597 > fitmap #25.2 inMap #1
    31598 
    31599 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31600 postprocess_20231221.mrc (#1) using 3198 atoms 
    31601 average map value = 0.004821, steps = 780 
    31602 shifted from previous position = 0.714 
    31603 rotated from previous position = 0.668 degrees 
    31604 atoms outside contour = 1143, contour level = 0.0030713 
    31605  
    31606 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31607 postprocess_20231221.mrc (#1) coordinates: 
    31608 Matrix rotation and translation 
    31609 -0.49491778 0.86510217 -0.08157577 165.47325028 
    31610 -0.86820239 -0.49618068 0.00541596 369.31835657 
    31611 -0.03579097 0.07350473 0.99665242 111.47245341 
    31612 Axis 0.03923870 -0.02638520 -0.99888145 
    31613 Axis point 191.17660800 133.88399063 0.00000000 
    31614 Rotation angle (degrees) 119.81644617 
    31615 Shift along axis -114.59935024 
    31616  
    31617 
    31618 > fitmap #25.2 inMap #1
    31619 
    31620 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31621 postprocess_20231221.mrc (#1) using 3198 atoms 
    31622 average map value = 0.004821, steps = 64 
    31623 shifted from previous position = 0.0131 
    31624 rotated from previous position = 0.0221 degrees 
    31625 atoms outside contour = 1139, contour level = 0.0030713 
    31626  
    31627 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31628 postprocess_20231221.mrc (#1) coordinates: 
    31629 Matrix rotation and translation 
    31630 -0.49481708 0.86518268 -0.08133249 165.41686729 
    31631 -0.86827439 -0.49605177 0.00567551 369.28671394 
    31632 -0.03543477 0.07342726 0.99667086 111.44218595 
    31633 Axis 0.03904127 -0.02644811 -0.99888752 
    31634 Axis point 191.14217122 133.87985316 0.00000000 
    31635 Rotation angle (degrees) 119.80825626 
    31636 Shift along axis -114.62705853 
    31637  
    31638 
    31639 > fitmap #25.2 inMap #1
    31640 
    31641 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31642 postprocess_20231221.mrc (#1) using 3198 atoms 
    31643 average map value = 0.004764, steps = 2000 
    31644 shifted from previous position = 0.359 
    31645 rotated from previous position = 1.01 degrees 
    31646 atoms outside contour = 1207, contour level = 0.0030713 
    31647  
    31648 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31649 postprocess_20231221.mrc (#1) coordinates: 
    31650 Matrix rotation and translation 
    31651 -0.50510844 0.85913549 -0.08216852 167.75724459 
    31652 -0.86177597 -0.50725145 -0.00617524 370.89827941 
    31653 -0.04698546 0.06769169 0.99659931 113.55791641 
    31654 Axis 0.04287471 -0.02042136 -0.99887173 
    31655 Axis point 191.71488637 134.92029494 0.00000000 
    31656 Rotation angle (degrees) 120.52273971 
    31657 Shift along axis -113.81149688 
    31658  
    31659 
    31660 > fitmap #25.2 inMap #1
    31661 
    31662 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31663 postprocess_20231221.mrc (#1) using 3198 atoms 
    31664 average map value = 0.004769, steps = 2000 
    31665 shifted from previous position = 0.932 
    31666 rotated from previous position = 2.1 degrees 
    31667 atoms outside contour = 1231, contour level = 0.0030713 
    31668  
    31669 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31670 postprocess_20231221.mrc (#1) coordinates: 
    31671 Matrix rotation and translation 
    31672 -0.48810056 0.86985764 -0.07145288 162.94544324 
    31673 -0.87262846 -0.48793578 0.02093378 367.84554135 
    31674 -0.01665501 0.07256960 0.99722427 108.46520732 
    31675 Axis 0.02960580 -0.03141878 -0.99906774 
    31676 Axis point 189.80852921 133.47148642 0.00000000 
    31677 Rotation angle (degrees) 119.30154973 
    31678 Shift along axis -115.09721800 
    31679  
    31680 
    31681 > fitmap #25.2 inMap #1
    31682 
    31683 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31684 postprocess_20231221.mrc (#1) using 3198 atoms 
    31685 average map value = 0.004649, steps = 2000 
    31686 shifted from previous position = 1.27 
    31687 rotated from previous position = 1.18 degrees 
    31688 atoms outside contour = 1118, contour level = 0.0030713 
    31689  
    31690 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31691 postprocess_20231221.mrc (#1) coordinates: 
    31692 Matrix rotation and translation 
    31693 -0.49420295 0.86552472 -0.08142722 165.10368776 
    31694 -0.86860495 -0.49547861 0.00513516 368.74739200 
    31695 -0.03590084 0.07326590 0.99666605 110.61360921 
    31696 Axis 0.03924436 -0.02622390 -0.99888547 
    31697 Axis point 190.92237643 133.68971650 0.00000000 
    31698 Rotation angle (degrees) 119.76922245 
    31699 Shift along axis -113.68093322 
    31700  
    31701 
    31702 > fitmap #25.2 inMap #1
    31703 
    31704 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31705 postprocess_20231221.mrc (#1) using 3198 atoms 
    31706 average map value = 0.004761, steps = 2000 
    31707 shifted from previous position = 1.18 
    31708 rotated from previous position = 0.58 degrees 
    31709 atoms outside contour = 1134, contour level = 0.0030713 
    31710  
    31711 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31712 postprocess_20231221.mrc (#1) coordinates: 
    31713 Matrix rotation and translation 
    31714 -0.49092819 0.86696017 -0.08584618 164.92126958 
    31715 -0.87065608 -0.49171552 0.01318449 367.99085791 
    31716 -0.03078148 0.08121514 0.99622115 110.40135658 
    31717 Axis 0.03910214 -0.03164967 -0.99873386 
    31718 Axis point 190.88331822 132.82886345 0.00000000 
    31719 Rotation angle (degrees) 119.55186916 
    31720 Shift along axis -115.45958874 
    31721  
    31722 
    31723 > fitmap #25.2 inMap #1
    31724 
    31725 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31726 postprocess_20231221.mrc (#1) using 3198 atoms 
    31727 average map value = 0.004749, steps = 2000 
    31728 shifted from previous position = 0.2 
    31729 rotated from previous position = 0.26 degrees 
    31730 atoms outside contour = 1125, contour level = 0.0030713 
    31731  
    31732 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31733 postprocess_20231221.mrc (#1) coordinates: 
    31734 Matrix rotation and translation 
    31735 -0.49206589 0.86591460 -0.08979457 165.67929543 
    31736 -0.86988864 -0.49310893 0.01171904 368.04099763 
    31737 -0.03413081 0.08387782 0.99589135 110.75434375 
    31738 Axis 0.04151365 -0.03202390 -0.99862460 
    31739 Axis point 191.21549454 132.61304680 0.00000000 
    31740 Rotation angle (degrees) 119.64612847 
    31741 Shift along axis -115.51016963 
    31742  
    31743 
    31744 > fitmap #25.2 inMap #1
    31745 
    31746 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31747 postprocess_20231221.mrc (#1) using 3198 atoms 
    31748 average map value = 0.004821, steps = 1348 
    31749 shifted from previous position = 0.679 
    31750 rotated from previous position = 0.63 degrees 
    31751 atoms outside contour = 1142, contour level = 0.0030713 
    31752  
    31753 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31754 postprocess_20231221.mrc (#1) coordinates: 
    31755 Matrix rotation and translation 
    31756 -0.49459935 0.86532014 -0.08119434 165.36859381 
    31757 -0.86839978 -0.49583294 0.00561293 369.28123388 
    31758 -0.03540185 0.07328530 0.99668248 111.41325860 
    31759 Axis 0.03898977 -0.02638357 -0.99889124 
    31760 Axis point 191.14669718 133.88281268 0.00000000 
    31761 Rotation angle (degrees) 119.79346036 
    31762 Shift along axis -114.58500103 
    31763  
    31764 
    31765 > fitmap #25.2 inMap #1
    31766 
    31767 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31768 postprocess_20231221.mrc (#1) using 3198 atoms 
    31769 average map value = 0.004768, steps = 2000 
    31770 shifted from previous position = 0.809 
    31771 rotated from previous position = 1.18 degrees 
    31772 atoms outside contour = 1233, contour level = 0.0030713 
    31773  
    31774 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31775 postprocess_20231221.mrc (#1) coordinates: 
    31776 Matrix rotation and translation 
    31777 -0.48800487 0.86993760 -0.07113230 162.89402781 
    31778 -0.87268732 -0.48782476 0.02106729 367.83006280 
    31779 -0.01637287 0.07235719 0.99724438 108.42625211 
    31780 Axis 0.02940531 -0.03139445 -0.99907443 
    31781 Axis point 189.78296479 133.48069498 0.00000000 
    31782 Rotation angle (degrees) 119.29409879 
    31783 Shift along axis -115.08376766 
    31784  
    31785 
    31786 > view matrix models
    31787 > #25.2,-0.53208,0.84559,-0.043089,279.75,-0.84349,-0.53381,-0.059738,489.8,-0.073515,0.004559,0.99728,234.33
    31788 
    31789 > fitmap #25.2 inMap #1
    31790 
    31791 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31792 postprocess_20231221.mrc (#1) using 3198 atoms 
    31793 average map value = 0.004631, steps = 2000 
    31794 shifted from previous position = 1.18 
    31795 rotated from previous position = 5.05 degrees 
    31796 atoms outside contour = 1147, contour level = 0.0030713 
    31797  
    31798 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31799 postprocess_20231221.mrc (#1) coordinates: 
    31800 Matrix rotation and translation 
    31801 -0.48815171 0.86762043 -0.09456580 165.62279976 
    31802 -0.87118662 -0.49090427 -0.00684532 370.03919003 
    31803 -0.05236190 0.07904290 0.99549507 112.85429778 
    31804 Axis 0.04932028 -0.02423508 -0.99848894 
    31805 Axis point 192.95003348 133.60578009 0.00000000 
    31806 Rotation angle (degrees) 119.45767326 
    31807 Shift along axis -113.48313585 
    31808  
    31809 
    31810 > fitmap #25.2 inMap #1
    31811 
    31812 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31813 postprocess_20231221.mrc (#1) using 3198 atoms 
    31814 average map value = 0.004719, steps = 2000 
    31815 shifted from previous position = 1.54 
    31816 rotated from previous position = 1.34 degrees 
    31817 atoms outside contour = 1179, contour level = 0.0030713 
    31818  
    31819 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31820 postprocess_20231221.mrc (#1) coordinates: 
    31821 Matrix rotation and translation 
    31822 -0.50656202 0.85664740 -0.09772482 169.61094538 
    31823 -0.86000131 -0.51010794 -0.01369808 371.28799353 
    31824 -0.06158463 0.07710455 0.99511919 115.79424995 
    31825 Axis 0.05280977 -0.02101872 -0.99838336 
    31826 Axis point 192.99506333 134.36543524 0.00000000 
    31827 Rotation angle (degrees) 120.71549142 
    31828 Shift along axis -114.45393709 
    31829  
    31830 
    31831 > fitmap #25.2 inMap #1
    31832 
    31833 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31834 postprocess_20231221.mrc (#1) using 3198 atoms 
    31835 average map value = 0.004768, steps = 2000 
    31836 shifted from previous position = 1.41 
    31837 rotated from previous position = 1.12 degrees 
    31838 atoms outside contour = 1211, contour level = 0.0030713 
    31839  
    31840 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31841 postprocess_20231221.mrc (#1) coordinates: 
    31842 Matrix rotation and translation 
    31843 -0.50197269 0.86100337 -0.08183276 167.17027116 
    31844 -0.86368653 -0.50400525 -0.00492678 370.78555390 
    31845 -0.04548612 0.06820474 0.99663389 113.17870968 
    31846 Axis 0.04235525 -0.02105072 -0.99888082 
    31847 Axis point 191.78578620 134.80515999 0.00000000 
    31848 Rotation angle (degrees) 120.30958336 
    31849 Shift along axis -113.77680632 
    31850  
    31851 
    31852 > fitmap #25.2 inMap #1
    31853 
    31854 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31855 postprocess_20231221.mrc (#1) using 3198 atoms 
    31856 average map value = 0.00482, steps = 1560 
    31857 shifted from previous position = 0.399 
    31858 rotated from previous position = 0.787 degrees 
    31859 atoms outside contour = 1141, contour level = 0.0030713 
    31860  
    31861 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31862 postprocess_20231221.mrc (#1) coordinates: 
    31863 Matrix rotation and translation 
    31864 -0.49484515 0.86513945 -0.08162107 165.45679030 
    31865 -0.86824047 -0.49611484 0.00534265 369.29931336 
    31866 -0.03587129 0.07351050 0.99664911 111.47595487 
    31867 Axis 0.03928252 -0.02636384 -0.99888029 
    31868 Axis point 191.17583080 133.87458033 0.00000000 
    31869 Rotation angle (degrees) 119.81198347 
    31870 Shift along axis -114.58772451 
    31871  
    31872 
    31873 > fitmap #25.2 inMap #1
    31874 
    31875 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31876 postprocess_20231221.mrc (#1) using 3198 atoms 
    31877 average map value = 0.004821, steps = 512 
    31878 shifted from previous position = 0.0301 
    31879 rotated from previous position = 0.0216 degrees 
    31880 atoms outside contour = 1144, contour level = 0.0030713 
    31881  
    31882 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31883 postprocess_20231221.mrc (#1) coordinates: 
    31884 Matrix rotation and translation 
    31885 -0.49493164 0.86512442 -0.08125513 165.42697493 
    31886 -0.86819945 -0.49618631 0.00537170 369.32678383 
    31887 -0.03567049 0.07320428 0.99667885 111.47713848 
    31888 Axis 0.03909097 -0.02626979 -0.99889028 
    31889 Axis point 191.15121103 133.91325672 0.00000000 
    31890 Rotation angle (degrees) 119.81621672 
    31891 Shift along axis -114.58886669 
    31892  
    31893 
    31894 > fitmap #25.2 inMap #1
    31895 
    31896 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    31897 postprocess_20231221.mrc (#1) using 3198 atoms 
    31898 average map value = 0.004735, steps = 2000 
    31899 shifted from previous position = 0.966 
    31900 rotated from previous position = 1.37 degrees 
    31901 atoms outside contour = 1148, contour level = 0.0030713 
    31902  
    31903 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    31904 postprocess_20231221.mrc (#1) coordinates: 
    31905 Matrix rotation and translation 
    31906 -0.50248574 0.85925464 -0.09586205 168.60347666 
    31907 -0.86269476 -0.50562413 -0.01009856 370.75051195 
    31908 -0.05714740 0.07762530 0.99534340 114.76512812 
    31909 Axis 0.05086571 -0.02244826 -0.99845318 
    31910 Axis point 192.76925102 134.08584606 0.00000000 
    31911 Rotation angle (degrees) 120.42321792 
    31912 Shift along axis -114.33417459 
    31913  
    31914 
    31915 > select subtract #25.2
    31916 
    31917 Nothing selected 
    31918 
    31919 > hide #!25.2 models
    31920 
    31921 > show #25.3 models
    31922 
    31923 > hide #4 models
    31924 
    31925 > show #7 models
    31926 
    31927 > hide #7 models
    31928 
    31929 > show #7 models
    31930 
    31931 > hide #7 models
    31932 
    31933 > show #7 models
    31934 
    31935 > select add #7
    31936 
    31937 7214 atoms, 7373 bonds, 905 residues, 1 model selected 
    31938 
    31939 > fitmap #25.3 inMap #1
    31940 
    31941 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    31942 postprocess_20231221.mrc (#1) using 3371 atoms 
    31943 average map value = 0.004368, steps = 60 
    31944 shifted from previous position = 2.07 
    31945 rotated from previous position = 7.06 degrees 
    31946 atoms outside contour = 978, contour level = 0.0030713 
    31947  
    31948 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    31949 postprocess_20231221.mrc (#1) coordinates: 
    31950 Matrix rotation and translation 
    31951 -0.47545733 0.87640103 -0.07656081 158.51716871 
    31952 -0.87857427 -0.47750275 -0.00991786 369.90335293 
    31953 -0.04525002 0.06254884 0.99701558 112.99556207 
    31954 Axis 0.04125043 -0.01782314 -0.99898986 
    31955 Axis point 191.02269376 135.40608677 0.00000000 
    31956 Rotation angle (degrees) 118.55305011 
    31957 Shift along axis -112.93535652 
    31958  
    31959 
    31960 > view matrix models
    31961 > #7,-0.36432,-0.067161,-0.92885,297.27,0.22543,-0.97409,-0.017987,296.83,-0.90358,-0.21594,0.37002,346.7
    31962 
    31963 > fitmap #25.3 inMap #1
    31964 
    31965 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    31966 postprocess_20231221.mrc (#1) using 3371 atoms 
    31967 average map value = 0.004368, steps = 64 
    31968 shifted from previous position = 0.00767 
    31969 rotated from previous position = 0.0173 degrees 
    31970 atoms outside contour = 979, contour level = 0.0030713 
    31971  
    31972 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    31973 postprocess_20231221.mrc (#1) coordinates: 
    31974 Matrix rotation and translation 
    31975 -0.47532870 0.87644996 -0.07679897 158.52680230 
    31976 -0.87864353 -0.47737760 -0.00980606 369.88315964 
    31977 -0.04525663 0.06281782 0.99699837 112.96036915 
    31978 Axis 0.04133688 -0.01795363 -0.99898395 
    31979 Axis point 191.03872860 135.37544611 0.00000000 
    31980 Rotation angle (degrees) 118.54533465 
    31981 Shift along axis -112.93333754 
    31982  
    31983 
    31984 > fitmap #25.3 inMap #1
    31985 
    31986 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    31987 postprocess_20231221.mrc (#1) using 3371 atoms 
    31988 average map value = 0.004368, steps = 48 
    31989 shifted from previous position = 0.0552 
    31990 rotated from previous position = 0.0291 degrees 
    31991 atoms outside contour = 979, contour level = 0.0030713 
    31992  
    31993 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    31994 postprocess_20231221.mrc (#1) coordinates: 
    31995 Matrix rotation and translation 
    31996 -0.47523174 0.87646484 -0.07722804 158.59065575 
    31997 -0.87869684 -0.47728443 -0.00956120 369.81255513 
    31998 -0.04523979 0.06331625 0.99696760 112.93527431 
    31999 Axis 0.04147916 -0.01820653 -0.99897347 
    32000 Axis point 191.06092423 135.29625759 0.00000000 
    32001 Rotation angle (degrees) 118.54013797 
    32002 Shift along axis -112.97414056 
    32003  
    32004 
    32005 > view matrix models
    32006 > #7,-0.18466,-0.061928,-0.98085,300.57,-0.28631,-0.95134,0.11397,287.8,-0.94018,0.30187,0.15794,351.03
    32007 
    32008 > fitmap #25.3 inMap #1
    32009 
    32010 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    32011 postprocess_20231221.mrc (#1) using 3371 atoms 
    32012 average map value = 0.004368, steps = 60 
    32013 shifted from previous position = 0.0165 
    32014 rotated from previous position = 0.00533 degrees 
    32015 atoms outside contour = 978, contour level = 0.0030713 
    32016  
    32017 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    32018 postprocess_20231221.mrc (#1) coordinates: 
    32019 Matrix rotation and translation 
    32020 -0.47530223 0.87643103 -0.07717786 158.59298727 
    32021 -0.87865977 -0.47735271 -0.00955947 369.82530316 
    32022 -0.04521928 0.06326945 0.99697150 112.92595021 
    32023 Axis 0.04145327 -0.01819041 -0.99897484 
    32024 Axis point 191.05511213 135.30825161 0.00000000 
    32025 Rotation angle (degrees) 118.54453621 
    32026 Shift along axis -112.96325958 
    32027  
    32028 
    32029 > fitmap #25.3 inMap #1
    32030 
    32031 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    32032 postprocess_20231221.mrc (#1) using 3371 atoms 
    32033 average map value = 0.004368, steps = 48 
    32034 shifted from previous position = 0.0466 
    32035 rotated from previous position = 0.0305 degrees 
    32036 atoms outside contour = 977, contour level = 0.0030713 
    32037  
    32038 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    32039 postprocess_20231221.mrc (#1) coordinates: 
    32040 Matrix rotation and translation 
    32041 -0.47532057 0.87645827 -0.07675451 158.51183318 
    32042 -0.87864577 -0.47737198 -0.00987840 369.89939667 
    32043 -0.04529846 0.06274462 0.99700108 112.97741102 
    32044 Axis 0.04133618 -0.01790442 -0.99898486 
    32045 Axis point 191.03910614 135.39019927 0.00000000 
    32046 Rotation angle (degrees) 118.54479799 
    32047 Shift along axis -112.93328385 
    32048  
    32049 
    32050 > fitmap #25.3 inMap #1
    32051 
    32052 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    32053 postprocess_20231221.mrc (#1) using 3371 atoms 
    32054 average map value = 0.004368, steps = 76 
    32055 shifted from previous position = 0.0517 
    32056 rotated from previous position = 0.0235 degrees 
    32057 atoms outside contour = 976, contour level = 0.0030713 
    32058  
    32059 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    32060 postprocess_20231221.mrc (#1) coordinates: 
    32061 Matrix rotation and translation 
    32062 -0.47523483 0.87647428 -0.07710170 158.56597258 
    32063 -0.87869259 -0.47728974 -0.00968672 369.83604006 
    32064 -0.04529001 0.06314522 0.99697617 112.95918118 
    32065 Axis 0.04145326 -0.01810604 -0.99897638 
    32066 Axis point 191.05770751 135.32190842 0.00000000 
    32067 Rotation angle (degrees) 118.54013231 
    32068 Shift along axis -112.96674420 
    32069  
    32070 
    32071 > fitmap #25.3 inMap #1
    32072 
    32073 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    32074 postprocess_20231221.mrc (#1) using 3371 atoms 
    32075 average map value = 0.004368, steps = 60 
    32076 shifted from previous position = 0.0425 
    32077 rotated from previous position = 0.0182 degrees 
    32078 atoms outside contour = 978, contour level = 0.0030713 
    32079  
    32080 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    32081 postprocess_20231221.mrc (#1) coordinates: 
    32082 Matrix rotation and translation 
    32083 -0.47534774 0.87643769 -0.07682111 158.53698924 
    32084 -0.87863438 -0.47739524 -0.00976706 369.87784034 
    32085 -0.04523426 0.06285491 0.99699705 112.95396532 
    32086 Axis 0.04133628 -0.01797917 -0.99898351 
    32087 Axis point 191.03855454 135.36953188 0.00000000 
    32088 Rotation angle (degrees) 118.54657438 
    32089 Shift along axis -112.93591686 
    32090  
    32091 
    32092 > fitmap #25.3 inMap #1
    32093 
    32094 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    32095 postprocess_20231221.mrc (#1) using 3371 atoms 
    32096 average map value = 0.004368, steps = 60 
    32097 shifted from previous position = 0.00591 
    32098 rotated from previous position = 0.012 degrees 
    32099 atoms outside contour = 979, contour level = 0.0030713 
    32100  
    32101 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    32102 postprocess_20231221.mrc (#1) coordinates: 
    32103 Matrix rotation and translation 
    32104 -0.47542699 0.87640826 -0.07666634 158.52781577 
    32105 -0.87859017 -0.47747440 -0.00987431 369.89735913 
    32106 -0.04526014 0.06266377 0.99700790 112.98110921 
    32107 Axis 0.04129042 -0.01787716 -0.99898724 
    32108 Axis point 191.03030121 135.39393921 0.00000000 
    32109 Rotation angle (degrees) 118.55138644 
    32110 Shift along axis -112.93372065 
    32111  
    32112 
    32113 > fitmap #25.3 inMap #1
    32114 
    32115 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    32116 postprocess_20231221.mrc (#1) using 3371 atoms 
    32117 average map value = 0.004368, steps = 64 
    32118 shifted from previous position = 0.0208 
    32119 rotated from previous position = 0.0226 degrees 
    32120 atoms outside contour = 975, contour level = 0.0030713 
    32121  
    32122 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    32123 postprocess_20231221.mrc (#1) coordinates: 
    32124 Matrix rotation and translation 
    32125 -0.47526491 0.87649565 -0.07667224 158.48228974 
    32126 -0.87866184 -0.47733488 -0.01023597 369.94394497 
    32127 -0.04557011 0.06250417 0.99700380 113.06380899 
    32128 Axis 0.04140162 -0.01770244 -0.99898575 
    32129 Axis point 191.05651983 135.42671950 0.00000000 
    32130 Rotation angle (degrees) 118.54168418 
    32131 Shift along axis -112.93662236 
    32132  
    32133 
    32134 > view matrix models
    32135 > #7,-0.28866,-0.11227,-0.95083,298.71,-0.30709,-0.92977,0.20301,285.33,-0.90684,0.3506,0.23392,349.46
    32136 
    32137 > fitmap #25.3 inMap #1
    32138 
    32139 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    32140 postprocess_20231221.mrc (#1) using 3371 atoms 
    32141 average map value = 0.004368, steps = 48 
    32142 shifted from previous position = 0.0526 
    32143 rotated from previous position = 0.0308 degrees 
    32144 atoms outside contour = 974, contour level = 0.0030713 
    32145  
    32146 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    32147 postprocess_20231221.mrc (#1) coordinates: 
    32148 Matrix rotation and translation 
    32149 -0.47495325 0.87662798 -0.07708953 158.50383441 
    32150 -0.87881880 -0.47704477 -0.01028609 369.91372761 
    32151 -0.04579223 0.06286231 0.99697111 113.09251968 
    32152 Axis 0.04162666 -0.01781040 -0.99897448 
    32153 Axis point 191.10946912 135.37243598 0.00000000 
    32154 Rotation angle (degrees) 118.52312738 
    32155 Shift along axis -112.96686564 
    32156  
    32157 
    32158 > fitmap #25.3 inMap #1
    32159 
    32160 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    32161 postprocess_20231221.mrc (#1) using 3371 atoms 
    32162 average map value = 0.004368, steps = 44 
    32163 shifted from previous position = 0.0526 
    32164 rotated from previous position = 0.0368 degrees 
    32165 atoms outside contour = 979, contour level = 0.0030713 
    32166  
    32167 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    32168 postprocess_20231221.mrc (#1) coordinates: 
    32169 Matrix rotation and translation 
    32170 -0.47535997 0.87643990 -0.07672018 158.52214584 
    32171 -0.87862059 -0.47741625 -0.00997899 369.90795329 
    32172 -0.04537344 0.06266432 0.99700272 113.00354608 
    32173 Axis 0.04134878 -0.01784265 -0.99898544 
    32174 Axis point 191.04424832 135.39684200 0.00000000 
    32175 Rotation angle (degrees) 118.54747320 
    32176 Shift along axis -112.93433985 
    32177  
    32178 
    32179 > fitmap #25.3 inMap #1
    32180 
    32181 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    32182 postprocess_20231221.mrc (#1) using 3371 atoms 
    32183 average map value = 0.004368, steps = 76 
    32184 shifted from previous position = 0.0415 
    32185 rotated from previous position = 0.0284 degrees 
    32186 atoms outside contour = 976, contour level = 0.0030713 
    32187  
    32188 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    32189 postprocess_20231221.mrc (#1) coordinates: 
    32190 Matrix rotation and translation 
    32191 -0.47524069 0.87647169 -0.07709506 158.56622957 
    32192 -0.87868942 -0.47729551 -0.00968985 369.83672080 
    32193 -0.04529000 0.06313760 0.99697665 112.95987184 
    32194 Axis 0.04145084 -0.01810233 -0.99897654 
    32195 Axis point 191.05723336 135.32281988 0.00000000 
    32196 Rotation angle (degrees) 118.54049592 
    32197 Shift along axis -112.96646428 
    32198  
    32199 
    32200 > fitmap #25.3 inMap #1
    32201 
    32202 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    32203 postprocess_20231221.mrc (#1) using 3371 atoms 
    32204 average map value = 0.004368, steps = 60 
    32205 shifted from previous position = 0.0426 
    32206 rotated from previous position = 0.0168 degrees 
    32207 atoms outside contour = 977, contour level = 0.0030713 
    32208  
    32209 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    32210 postprocess_20231221.mrc (#1) coordinates: 
    32211 Matrix rotation and translation 
    32212 -0.47534798 0.87643644 -0.07683393 158.53933827 
    32213 -0.87863466 -0.47739506 -0.00975115 369.87593931 
    32214 -0.04522640 0.06287377 0.99699621 112.95017722 
    32215 Axis 0.04133797 -0.01799095 -0.99898323 
    32216 Axis point 191.03875226 135.36720668 0.00000000 
    32217 Rotation angle (degrees) 118.54660343 
    32218 Shift along axis -112.93605809 
    32219  
    32220 
    32221 > fitmap #25.3 inMap #1
    32222 
    32223 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    32224 postprocess_20231221.mrc (#1) using 3371 atoms 
    32225 average map value = 0.004368, steps = 60 
    32226 shifted from previous position = 0.0467 
    32227 rotated from previous position = 0.0239 degrees 
    32228 atoms outside contour = 978, contour level = 0.0030713 
    32229  
    32230 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    32231 postprocess_20231221.mrc (#1) coordinates: 
    32232 Matrix rotation and translation 
    32233 -0.47519240 0.87648884 -0.07719767 158.57300363 
    32234 -0.87871531 -0.47724879 -0.00964283 369.82620699 
    32235 -0.04529432 0.06325257 0.99696917 112.94962485 
    32236 Axis 0.04148840 -0.01815778 -0.99897398 
    32237 Axis point 191.06401223 135.30831728 0.00000000 
    32238 Rotation angle (degrees) 118.53764154 
    32239 Shift along axis -112.97001914 
    32240  
    32241 
    32242 > fitmap #25.3 inMap #1
    32243 
    32244 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    32245 postprocess_20231221.mrc (#1) using 3371 atoms 
    32246 average map value = 0.004368, steps = 48 
    32247 shifted from previous position = 0.0506 
    32248 rotated from previous position = 0.0261 degrees 
    32249 atoms outside contour = 979, contour level = 0.0030713 
    32250  
    32251 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    32252 postprocess_20231221.mrc (#1) coordinates: 
    32253 Matrix rotation and translation 
    32254 -0.47531070 0.87646150 -0.07677865 158.52036171 
    32255 -0.87865558 -0.47735621 -0.00976759 369.87910847 
    32256 -0.04521168 0.06281934 0.99700031 112.95253245 
    32257 Axis 0.04131532 -0.01796741 -0.99898459 
    32258 Axis point 191.03531248 135.37407238 0.00000000 
    32259 Rotation angle (degrees) 118.54398695 
    32260 Shift along axis -112.93428991 
    32261  
    32262 
    32263 > fitmap #25.3 inMap #1
    32264 
    32265 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    32266 postprocess_20231221.mrc (#1) using 3371 atoms 
    32267 average map value = 0.004368, steps = 48 
    32268 shifted from previous position = 0.0542 
    32269 rotated from previous position = 0.0257 degrees 
    32270 atoms outside contour = 978, contour level = 0.0030713 
    32271  
    32272 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    32273 postprocess_20231221.mrc (#1) coordinates: 
    32274 Matrix rotation and translation 
    32275 -0.47525371 0.87645634 -0.07718930 158.58846566 
    32276 -0.87868413 -0.47730708 -0.00959885 369.82029855 
    32277 -0.04525597 0.06326312 0.99697024 112.94328927 
    32278 Axis 0.04147089 -0.01817551 -0.99897438 
    32279 Axis point 191.05980700 135.30412830 0.00000000 
    32280 Rotation angle (degrees) 118.54150687 
    32281 Shift along axis -112.97232105 
    32282  
    32283 
    32284 > select subtract #7
    32285 
    32286 Nothing selected 
    32287 
    32288 > select add #7
    32289 
    32290 7214 atoms, 7373 bonds, 905 residues, 1 model selected 
    32291 
    32292 > select subtract #7
    32293 
    32294 Nothing selected 
    32295 
    32296 > select add #7
    32297 
    32298 7214 atoms, 7373 bonds, 905 residues, 1 model selected 
    32299 
    32300 > select subtract #7
    32301 
    32302 Nothing selected 
    32303 
    32304 > select add #25.3
    32305 
    32306 3371 atoms, 3370 bonds, 843 residues, 1 model selected 
    32307 
    32308 > fitmap #25.3 inMap #1
    32309 
    32310 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    32311 postprocess_20231221.mrc (#1) using 3371 atoms 
    32312 average map value = 0.004368, steps = 48 
    32313 shifted from previous position = 0.052 
    32314 rotated from previous position = 0.0219 degrees 
    32315 atoms outside contour = 978, contour level = 0.0030713 
    32316  
    32317 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    32318 postprocess_20231221.mrc (#1) coordinates: 
    32319 Matrix rotation and translation 
    32320 -0.47531155 0.87645449 -0.07685344 158.53312907 
    32321 -0.87865324 -0.47736051 -0.00976832 369.87749105 
    32322 -0.04524829 0.06288453 0.99699454 112.95097096 
    32323 Axis 0.04135298 -0.01798921 -0.99898264 
    32324 Axis point 191.04202451 135.36723140 0.00000000 
    32325 Rotation angle (degrees) 118.54434302 
    32326 Shift along axis -112.93404570 
    32327  
    32328 
    32329 > fitmap #25.3 inMap #1
    32330 
    32331 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    32332 postprocess_20231221.mrc (#1) using 3371 atoms 
    32333 average map value = 0.004368, steps = 64 
    32334 shifted from previous position = 0.00761 
    32335 rotated from previous position = 0.0171 degrees 
    32336 atoms outside contour = 978, contour level = 0.0030713 
    32337  
    32338 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    32339 postprocess_20231221.mrc (#1) coordinates: 
    32340 Matrix rotation and translation 
    32341 -0.47544691 0.87640134 -0.07662189 158.52466536 
    32342 -0.87858021 -0.47749262 -0.00987876 369.90162500 
    32343 -0.04524415 0.06262165 0.99701127 112.97927090 
    32344 Axis 0.04126942 -0.01786116 -0.99898840 
    32345 Axis point 191.02673411 135.39983726 0.00000000 
    32346 Rotation angle (degrees) 118.55252039 
    32347 Shift along axis -112.92963021 
    32348  
    32349 
    32350 > fitmap #25.3 inMap #1
    32351 
    32352 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    32353 postprocess_20231221.mrc (#1) using 3371 atoms 
    32354 average map value = 0.004368, steps = 48 
    32355 shifted from previous position = 0.0558 
    32356 rotated from previous position = 0.0355 degrees 
    32357 atoms outside contour = 975, contour level = 0.0030713 
    32358  
    32359 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    32360 postprocess_20231221.mrc (#1) coordinates: 
    32361 Matrix rotation and translation 
    32362 -0.47526835 0.87645184 -0.07715024 158.58396185 
    32363 -0.87867573 -0.47732192 -0.00962940 369.82656908 
    32364 -0.04526520 0.06321349 0.99697297 112.95017554 
    32365 Axis 0.04146038 -0.01814817 -0.99897532 
    32366 Axis point 191.05789318 135.31134266 0.00000000 
    32367 Rotation angle (degrees) 118.54237935 
    32368 Shift along axis -112.97116325 
    32369  
    32370 
    32371 > fitmap #25.3 inMap #1
    32372 
    32373 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    32374 postprocess_20231221.mrc (#1) using 3371 atoms 
    32375 average map value = 0.004368, steps = 60 
    32376 shifted from previous position = 0.00488 
    32377 rotated from previous position = 0.0013 degrees 
    32378 atoms outside contour = 977, contour level = 0.0030713 
    32379  
    32380 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    32381 postprocess_20231221.mrc (#1) coordinates: 
    32382 Matrix rotation and translation 
    32383 -0.47525820 0.87645883 -0.07713326 158.57888826 
    32384 -0.87868203 -0.47731049 -0.00962170 369.82738709 
    32385 -0.04524954 0.06320282 0.99697436 112.94459965 
    32386 Axis 0.04144962 -0.01814730 -0.99897578 
    32387 Axis point 191.05650349 135.31307075 0.00000000 
    32388 Rotation angle (degrees) 118.54163027 
    32389 Shift along axis -112.96725292 
    32390  
    32391 
    32392 > fitmap #25.3 inMap #1
    32393 
    32394 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    32395 postprocess_20231221.mrc (#1) using 3371 atoms 
    32396 average map value = 0.004368, steps = 60 
    32397 shifted from previous position = 0.00445 
    32398 rotated from previous position = 0.00633 degrees 
    32399 atoms outside contour = 975, contour level = 0.0030713 
    32400  
    32401 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    32402 postprocess_20231221.mrc (#1) coordinates: 
    32403 Matrix rotation and translation 
    32404 -0.47527033 0.87645853 -0.07706200 158.56801263 
    32405 -0.87867344 -0.47732463 -0.00970424 369.83968258 
    32406 -0.04528895 0.06310019 0.99697907 112.96447076 
    32407 Axis 0.04143847 -0.01808443 -0.99897738 
    32408 Axis point 191.05491510 135.32697136 0.00000000 
    32409 Rotation angle (degrees) 118.54233328 
    32410 Shift along axis -112.96647383 
    32411  
    32412 
    32413 > fitmap #25.3 inMap #1
    32414 
    32415 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    32416 postprocess_20231221.mrc (#1) using 3371 atoms 
    32417 average map value = 0.004368, steps = 60 
    32418 shifted from previous position = 0.0403 
    32419 rotated from previous position = 0.0183 degrees 
    32420 atoms outside contour = 979, contour level = 0.0030713 
    32421  
    32422 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    32423 postprocess_20231221.mrc (#1) coordinates: 
    32424 Matrix rotation and translation 
    32425 -0.47533984 0.87644582 -0.07677719 158.52777202 
    32426 -0.87863714 -0.47738898 -0.00982497 369.88348376 
    32427 -0.04526364 0.06278909 0.99699986 112.96898440 
    32428 Axis 0.04133156 -0.01793736 -0.99898446 
    32429 Axis point 191.03816673 135.37698554 0.00000000 
    32430 Rotation angle (degrees) 118.54602065 
    32431 Shift along axis -112.93679257 
    32432  
    32433 
    32434 > fitmap #25.3 inMap #1
    32435 
    32436 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    32437 postprocess_20231221.mrc (#1) using 3371 atoms 
    32438 average map value = 0.004368, steps = 48 
    32439 shifted from previous position = 0.00627 
    32440 rotated from previous position = 0.0148 degrees 
    32441 atoms outside contour = 977, contour level = 0.0030713 
    32442  
    32443 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    32444 postprocess_20231221.mrc (#1) coordinates: 
    32445 Matrix rotation and translation 
    32446 -0.47538762 0.87643915 -0.07655734 158.50235918 
    32447 -0.87861097 -0.47743459 -0.00994791 369.90367199 
    32448 -0.04526986 0.06253500 0.99701555 112.99656841 
    32449 Axis 0.04125790 -0.01780910 -0.99898980 
    32450 Axis point 191.02610562 135.40690521 0.00000000 
    32451 Rotation angle (degrees) 118.54855456 
    32452 Shift along axis -112.93059754 
    32453  
    32454 
    32455 > fitmap #7 inMap #1
    32456 
    32457 Fit molecule CopBprime_O55029.pdb (#7) to map postprocess_20231221.mrc (#1)
    32458 using 7214 atoms 
    32459 average map value = 0.00312, steps = 96 
    32460 shifted from previous position = 3.54 
    32461 rotated from previous position = 19.3 degrees 
    32462 atoms outside contour = 3686, contour level = 0.0030713 
    32463  
    32464 Position of CopBprime_O55029.pdb (#7) relative to postprocess_20231221.mrc
    32465 (#1) coordinates: 
    32466 Matrix rotation and translation 
    32467 -0.16312220 -0.17485605 -0.97098739 188.46974228 
    32468 -0.01374495 -0.98367120 0.17944926 177.44362101 
    32469 -0.98651012 0.04261833 0.15805523 238.56001859 
    32470 Axis -0.64559811 0.07323964 0.76015725 
    32471 Axis point 189.52310479 85.45609714 0.00000000 
    32472 Rotation angle (degrees) 173.91681678 
    32473 Shift along axis 72.66332588 
    32474  
    32475 
    32476 > fitmap #7 inMap #1
    32477 
    32478 Fit molecule CopBprime_O55029.pdb (#7) to map postprocess_20231221.mrc (#1)
    32479 using 7214 atoms 
    32480 average map value = 0.003119, steps = 28 
    32481 shifted from previous position = 0.059 
    32482 rotated from previous position = 0.0701 degrees 
    32483 atoms outside contour = 3678, contour level = 0.0030713 
    32484  
    32485 Position of CopBprime_O55029.pdb (#7) relative to postprocess_20231221.mrc
    32486 (#1) coordinates: 
    32487 Matrix rotation and translation 
    32488 -0.16270247 -0.17502716 -0.97102698 188.49518175 
    32489 -0.01484005 -0.98359506 0.17977910 177.40834426 
    32490 -0.98656357 0.04366059 0.15743593 238.52181597 
    32491 Axis -0.64577505 0.07370887 0.75996157 
    32492 Axis point 189.60735220 85.32080770 0.00000000 
    32493 Rotation angle (degrees) 173.95027220 
    32494 Shift along axis 72.61849739 
    32495  
    32496 
    32497 > hide #!1 models
    32498 
    32499 > select subtract #25.3
    32500 
    32501 Nothing selected 
    32502 
    32503 > select add #25.3
    32504 
    32505 3371 atoms, 3370 bonds, 843 residues, 1 model selected 
    32506 
    32507 > select subtract #25.3
    32508 
    32509 Nothing selected 
    32510 
    32511 > hide #25.3 models
    32512 
    32513 > hide #7 models
    32514 
    32515 > show #8 models
    32516 
    32517 > show #!25.4 models
    32518 
    32519 > select add #25.4
    32520 
    32521 706 atoms, 704 bonds, 1 pseudobond, 177 residues, 2 models selected 
    32522 
    32523 > fitmap #25.4 inMap #1
    32524 
    32525 Fit molecule 5nzr_COPI_coat_leaf_2017.cif D (#25.4) to map
    32526 postprocess_20231221.mrc (#1) using 706 atoms 
    32527 average map value = 0.005751, steps = 84 
    32528 shifted from previous position = 5.75 
    32529 rotated from previous position = 7.61 degrees 
    32530 atoms outside contour = 156, contour level = 0.0030713 
    32531  
    32532 Position of 5nzr_COPI_coat_leaf_2017.cif D (#25.4) relative to
    32533 postprocess_20231221.mrc (#1) coordinates: 
    32534 Matrix rotation and translation 
    32535 -0.49064014 0.86626986 -0.09406793 165.85506336 
    32536 -0.87120858 -0.48971430 0.03428547 365.69516018 
    32537 -0.01636594 0.09877461 0.99497523 106.56737989 
    32538 Axis 0.03705399 -0.04464579 -0.99831546 
    32539 Axis point 190.16165110 130.77700867 0.00000000 
    32540 Rotation angle (degrees) 119.51751550 
    32541 Shift along axis -116.56901947 
    32542  
    32543 
    32544 > hide #!25.4 models
    32545 
    32546 > select subtract #25.4
    32547 
    32548 Nothing selected 
    32549 
    32550 > show #25.5 models
    32551 
    32552 > hide #8 models
    32553 
    32554 > show #6 models
    32555 
    32556 > hide #6 models
    32557 
    32558 > show #5 models
    32559 
    32560 > select add #25.5
    32561 
    32562 635 atoms, 634 bonds, 159 residues, 1 model selected 
    32563 
    32564 > view matrix models
    32565 > #25.5,-0.81618,0.4547,-0.35651,366.16,-0.56125,-0.47727,0.67617,389.42,0.13731,0.75197,0.64474,185.92
    32566 
    32567 > ui mousemode right "translate selected models"
    32568 
    32569 > view matrix models
    32570 > #25.5,-0.81618,0.4547,-0.35651,379.31,-0.56125,-0.47727,0.67617,385.17,0.13731,0.75197,0.64474,180.27
    32571 
    32572 > fitmap #25.5 inMap #1
    32573 
    32574 Fit molecule 5nzr_COPI_coat_leaf_2017.cif F (#25.5) to map
    32575 postprocess_20231221.mrc (#1) using 635 atoms 
    32576 average map value = 0.002979, steps = 308 
    32577 shifted from previous position = 6.54 
    32578 rotated from previous position = 59.7 degrees 
    32579 atoms outside contour = 415, contour level = 0.0030713 
    32580  
    32581 Position of 5nzr_COPI_coat_leaf_2017.cif F (#25.5) relative to
    32582 postprocess_20231221.mrc (#1) coordinates: 
    32583 Matrix rotation and translation 
    32584 -0.71654810 0.43382071 0.54622193 191.36896955 
    32585 -0.32335676 -0.90043574 0.29095682 282.02334066 
    32586 0.61806085 0.03186001 0.78548438 23.37614478 
    32587 Axis -0.32246089 -0.08940766 -0.94235091 
    32588 Axis point 121.98149155 122.51853562 0.00000000 
    32589 Rotation angle (degrees) 156.31242445 
    32590 Shift along axis -108.95258872 
    32591  
    32592 
    32593 > view matrix models
    32594 > #25.5,-0.7187,0.43216,0.54472,305.35,-0.32546,-0.90136,0.28569,390.65,0.61445,0.028044,0.78845,135.72
    32595 
    32596 > fitmap #25.5 inMap #1
    32597 
    32598 Fit molecule 5nzr_COPI_coat_leaf_2017.cif F (#25.5) to map
    32599 postprocess_20231221.mrc (#1) using 635 atoms 
    32600 average map value = 0.00298, steps = 148 
    32601 shifted from previous position = 4.55 
    32602 rotated from previous position = 0.283 degrees 
    32603 atoms outside contour = 416, contour level = 0.0030713 
    32604  
    32605 Position of 5nzr_COPI_coat_leaf_2017.cif F (#25.5) relative to
    32606 postprocess_20231221.mrc (#1) coordinates: 
    32607 Matrix rotation and translation 
    32608 -0.71339898 0.43568499 0.54885379 190.53612584 
    32609 -0.32599318 -0.89965518 0.29042900 282.46371120 
    32610 0.62031471 0.02826916 0.78384342 23.36045444 
    32611 Axis -0.32417629 -0.08836569 -0.94186052 
    32612 Axis point 121.83877150 122.72602465 0.00000000 
    32613 Rotation angle (degrees) 156.14974611 
    32614 Shift along axis -108.72968597 
    32615  
    32616 
    32617 > fitmap #25.5 inMap #1
    32618 
    32619 Fit molecule 5nzr_COPI_coat_leaf_2017.cif F (#25.5) to map
    32620 postprocess_20231221.mrc (#1) using 635 atoms 
    32621 average map value = 0.002979, steps = 128 
    32622 shifted from previous position = 0.0438 
    32623 rotated from previous position = 0.246 degrees 
    32624 atoms outside contour = 417, contour level = 0.0030713 
    32625  
    32626 Position of 5nzr_COPI_coat_leaf_2017.cif F (#25.5) relative to
    32627 postprocess_20231221.mrc (#1) coordinates: 
    32628 Matrix rotation and translation 
    32629 -0.71633393 0.43402068 0.54634397 191.29103107 
    32630 -0.32422244 -0.90037898 0.29016804 282.24449040 
    32631 0.61785556 0.03072023 0.78569126 23.47204407 
    32632 Axis -0.32246098 -0.08887991 -0.94240081 
    32633 Axis point 122.00120769 122.61282859 0.00000000 
    32634 Rotation angle (degrees) 156.27837564 
    32635 Shift along axis -108.88983065 
    32636  
    32637 
    32638 > view matrix models
    32639 > #25.5,-0.71848,0.43236,0.54484,303.98,-0.32632,-0.9013,0.2849,391.85,0.61424,0.026905,0.78866,136.39
    32640 
    32641 > fitmap #25.5 inMap #1
    32642 
    32643 Fit molecule 5nzr_COPI_coat_leaf_2017.cif F (#25.5) to map
    32644 postprocess_20231221.mrc (#1) using 635 atoms 
    32645 average map value = 0.002979, steps = 136 
    32646 shifted from previous position = 3.4 
    32647 rotated from previous position = 0.196 degrees 
    32648 atoms outside contour = 416, contour level = 0.0030713 
    32649  
    32650 Position of 5nzr_COPI_coat_leaf_2017.cif F (#25.5) relative to
    32651 postprocess_20231221.mrc (#1) coordinates: 
    32652 Matrix rotation and translation 
    32653 -0.71397866 0.43506650 0.54859057 190.69622708 
    32654 -0.32491193 -0.89991822 0.29082543 282.26969342 
    32655 0.62021505 0.02939952 0.78388070 23.29855258 
    32656 Axis -0.32399963 -0.08876820 -0.94188346 
    32657 Axis point 121.82842948 122.65232790 0.00000000 
    32658 Rotation angle (degrees) 156.20687582 
    32659 Shift along axis -108.78660015 
    32660  
    32661 
    32662 > fitmap #5 inMap #1
    32663 
    32664 Fit molecule hArf1_P84078 (#5) to map postprocess_20231221.mrc (#1) using 1457
    32665 atoms 
    32666 average map value = 0.002587, steps = 48 
    32667 shifted from previous position = 0.0368 
    32668 rotated from previous position = 0.0255 degrees 
    32669 atoms outside contour = 1149, contour level = 0.0030713 
    32670  
    32671 Position of hArf1_P84078 (#5) relative to postprocess_20231221.mrc (#1)
    32672 coordinates: 
    32673 Matrix rotation and translation 
    32674 0.15764381 0.02404457 0.98720326 126.73261994 
    32675 -0.68671661 -0.71572886 0.12709238 200.57813479 
    32676 0.70962575 -0.69796421 -0.09631842 178.39050082 
    32677 Axis -0.73416016 0.24699681 -0.63245666 
    32678 Axis point 0.00000000 138.26266793 -15.48832808 
    32679 Rotation angle (degrees) 145.81235297 
    32680 Shift along axis -156.32414243 
    32681  
    32682 
    32683 > fitmap #5 inMap #1
    32684 
    32685 Fit molecule hArf1_P84078 (#5) to map postprocess_20231221.mrc (#1) using 1457
    32686 atoms 
    32687 average map value = 0.002587, steps = 44 
    32688 shifted from previous position = 0.00981 
    32689 rotated from previous position = 0.0462 degrees 
    32690 atoms outside contour = 1150, contour level = 0.0030713 
    32691  
    32692 Position of hArf1_P84078 (#5) relative to postprocess_20231221.mrc (#1)
    32693 coordinates: 
    32694 Matrix rotation and translation 
    32695 0.15689280 0.02422660 0.98731844 126.72229531 
    32696 -0.68692000 -0.71560036 0.12671632 200.57644266 
    32697 0.70959535 -0.69808966 -0.09563081 178.39181938 
    32698 Axis -0.73387458 0.24710529 -0.63274566 
    32699 Axis point 0.00000000 138.27844137 -15.55661388 
    32700 Rotation angle (degrees) 145.80903401 
    32701 Shift along axis -156.31142131 
    32702  
    32703 
    32704 > fitmap #25.5 inMap #1
    32705 
    32706 Fit molecule 5nzr_COPI_coat_leaf_2017.cif F (#25.5) to map
    32707 postprocess_20231221.mrc (#1) using 635 atoms 
    32708 average map value = 0.002979, steps = 248 
    32709 shifted from previous position = 0.0207 
    32710 rotated from previous position = 0.177 degrees 
    32711 atoms outside contour = 418, contour level = 0.0030713 
    32712  
    32713 Position of 5nzr_COPI_coat_leaf_2017.cif F (#25.5) relative to
    32714 postprocess_20231221.mrc (#1) coordinates: 
    32715 Matrix rotation and translation 
    32716 -0.71390883 0.43627272 0.54772281 190.65990615 
    32717 -0.32756532 -0.89940270 0.28944038 282.77508578 
    32718 0.61889832 0.02721904 0.78499935 23.55080874 
    32719 Axis -0.32344066 -0.08779246 -0.94216698 
    32720 Axis point 121.99487683 122.81354587 0.00000000 
    32721 Rotation angle (degrees) 156.08616419 
    32722 Shift along axis -108.68147988 
    32723  
    32724 
    32725 > fitmap #25.5 inMap #1
    32726 
    32727 Fit molecule 5nzr_COPI_coat_leaf_2017.cif F (#25.5) to map
    32728 postprocess_20231221.mrc (#1) using 635 atoms 
    32729 average map value = 0.002979, steps = 100 
    32730 shifted from previous position = 0.026 
    32731 rotated from previous position = 0.173 degrees 
    32732 atoms outside contour = 417, contour level = 0.0030713 
    32733  
    32734 Position of 5nzr_COPI_coat_leaf_2017.cif F (#25.5) relative to
    32735 postprocess_20231221.mrc (#1) coordinates: 
    32736 Matrix rotation and translation 
    32737 -0.71499486 0.43483737 0.54744753 190.94416222 
    32738 -0.32495537 -0.90001607 0.29047386 282.30441960 
    32739 0.61902047 0.02979130 0.78480961 23.38220887 
    32740 Axis -0.32324665 -0.08875052 -0.94214380 
    32741 Axis point 121.92660031 122.64481230 0.00000000 
    32742 Rotation angle (degrees) 156.22002669 
    32743 Shift along axis -108.80612902 
    32744  
    32745 
    32746 > fitmap #25.5 inMap #1
    32747 
    32748 Fit molecule 5nzr_COPI_coat_leaf_2017.cif F (#25.5) to map
    32749 postprocess_20231221.mrc (#1) using 635 atoms 
    32750 average map value = 0.002979, steps = 296 
    32751 shifted from previous position = 0.019 
    32752 rotated from previous position = 0.062 degrees 
    32753 atoms outside contour = 417, contour level = 0.0030713 
    32754  
    32755 Position of 5nzr_COPI_coat_leaf_2017.cif F (#25.5) relative to
    32756 postprocess_20231221.mrc (#1) coordinates: 
    32757 Matrix rotation and translation 
    32758 -0.71427567 0.43543346 0.54791236 190.76898317 
    32759 -0.32523139 -0.89973120 0.29104691 282.28959226 
    32760 0.61970541 0.02968943 0.78427274 23.32706989 
    32761 Axis -0.32365836 -0.08890667 -0.94198772 
    32762 Axis point 121.88785716 122.63494813 0.00000000 
    32763 Rotation angle (degrees) 156.18685604 
    32764 Shift along axis -108.81521620 
    32765  
    32766 
    32767 > show #!1 models
    32768 
    32769 > hide #5 models
    32770 
    32771 > select subtract #25.5
    32772 
    32773 Nothing selected 
    32774 
    32775 > hide #25.5 models
    32776 
    32777 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    32778 > dataset/Chimera sessions/20240212_leaf_fitting_v5.cxs"
    32779 
    32780 > show #25.5 models
    32781 
    32782 > hide #25.5 models
    32783 
    32784 > select add #25.5
    32785 
    32786 635 atoms, 634 bonds, 159 residues, 1 model selected 
    32787 
    32788 > select subtract #25.5
    32789 
    32790 Nothing selected 
    32791 
    32792 > select add #25.5
    32793 
    32794 635 atoms, 634 bonds, 159 residues, 1 model selected 
    32795 
    32796 > select subtract #25.5
    32797 
    32798 Nothing selected 
    32799 
    32800 > show #25.5 models
    32801 
    32802 > show #6 models
    32803 
    32804 > hide #6 models
    32805 
    32806 > show #5 models
    32807 
    32808 > hide #5 models
    32809 
    32810 > show #5 models
    32811 
    32812 > hide #5 models
    32813 
    32814 > show #5 models
    32815 
    32816 > hide #5 models
    32817 
    32818 > show #6 models
    32819 
    32820 > hide #6 models
    32821 
    32822 > show #5 models
    32823 
    32824 > hide #5 models
    32825 
    32826 > show #5 models
    32827 
    32828 > hide #5 models
    32829 
    32830 > hide #25.5 models
    32831 
    32832 > hide #!1 models
    32833 
    32834 > show #!1 models
    32835 
    32836 > show #5 models
    32837 
    32838 > hide #5 models
    32839 
    32840 > show #6 models
    32841 
    32842 > hide #6 models
    32843 
    32844 > show #6 models
    32845 
    32846 > hide #6 models
    32847 
    32848 > show #6 models
    32849 
    32850 > show #5 models
    32851 
    32852 > hide #5 models
    32853 
    32854 > hide #6 models
    32855 
    32856 > show #6 models
    32857 
    32858 > show #5 models
    32859 
    32860 > hide #6 models
    32861 
    32862 > hide #5 models
    32863 
    32864 > show #6 models
    32865 
    32866 > show #5 models
    32867 
    32868 > hide #5 models
    32869 
    32870 > hide #6 models
    32871 
    32872 > show #4 models
    32873 
    32874 > volume #1 level 0.003994
    32875 
    32876 > volume #1 level 0.00261
    32877 
    32878 > select add #4
    32879 
    32880 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    32881 
    32882 > ui mousemode right "rotate selected models"
    32883 
    32884 > view matrix models
    32885 > #4,-0.05188,-0.63754,0.76867,284,-0.29607,0.74492,0.59786,318.34,-0.95376,-0.19656,-0.2274,349.89
    32886 
    32887 > fitmap #4 inMap #1
    32888 
    32889 Fit molecule CopB_Q9JIF7.pdb (#4) to map postprocess_20231221.mrc (#1) using
    32890 7501 atoms 
    32891 average map value = 0.002923, steps = 168 
    32892 shifted from previous position = 1.37 
    32893 rotated from previous position = 17.4 degrees 
    32894 atoms outside contour = 4241, contour level = 0.0026099 
    32895  
    32896 Position of CopB_Q9JIF7.pdb (#4) relative to postprocess_20231221.mrc (#1)
    32897 coordinates: 
    32898 Matrix rotation and translation 
    32899 -0.04176347 -0.73290883 0.67904378 172.38294327 
    32900 -0.03836890 0.68031190 0.73191772 204.58729961 
    32901 -0.99839052 0.00451326 -0.05653309 236.22237826 
    32902 Axis -0.37191513 0.85765654 0.35511180 
    32903 Axis point 209.24883276 0.00000000 -39.77291852 
    32904 Rotation angle (degrees) 102.06330668 
    32905 Shift along axis 195.23916518 
    32906  
    32907 
    32908 > fitmap #4 inMap #1
    32909 
    32910 Fit molecule CopB_Q9JIF7.pdb (#4) to map postprocess_20231221.mrc (#1) using
    32911 7501 atoms 
    32912 average map value = 0.002923, steps = 84 
    32913 shifted from previous position = 0.0295 
    32914 rotated from previous position = 0.0281 degrees 
    32915 atoms outside contour = 4239, contour level = 0.0026099 
    32916  
    32917 Position of CopB_Q9JIF7.pdb (#4) relative to postprocess_20231221.mrc (#1)
    32918 coordinates: 
    32919 Matrix rotation and translation 
    32920 -0.04186364 -0.73313873 0.67878939 172.36289881 
    32921 -0.03871970 0.68006509 0.73212858 204.56813767 
    32922 -0.99837279 0.00436704 -0.05685691 236.22572632 
    32923 Axis -0.37212500 0.85758032 0.35507603 
    32924 Axis point 209.25927852 0.00000000 -39.73446400 
    32925 Rotation angle (degrees) 102.08295835 
    32926 Shift along axis 195.17115835 
    32927  
    32928 
    32929 > fitmap #4 inMap #1
    32930 
    32931 Fit molecule CopB_Q9JIF7.pdb (#4) to map postprocess_20231221.mrc (#1) using
    32932 7501 atoms 
    32933 average map value = 0.002923, steps = 64 
    32934 shifted from previous position = 0.0254 
    32935 rotated from previous position = 0.0438 degrees 
    32936 atoms outside contour = 4237, contour level = 0.0026099 
    32937  
    32938 Position of CopB_Q9JIF7.pdb (#4) relative to postprocess_20231221.mrc (#1)
    32939 coordinates: 
    32940 Matrix rotation and translation 
    32941 -0.04160064 -0.73285881 0.67910776 172.35253082 
    32942 -0.03812474 0.68036549 0.73188066 204.56244996 
    32943 -0.99840668 0.00455589 -0.05624369 236.24744801 
    32944 Axis -0.37185384 0.85765014 0.35519144 
    32945 Axis point 209.24263523 0.00000000 -39.78121436 
    32946 Rotation angle (degrees) 102.04848903 
    32947 Shift along axis 195.26613509 
    32948  
    32949 
    32950 > fitmap #4 inMap #1
    32951 
    32952 Fit molecule CopB_Q9JIF7.pdb (#4) to map postprocess_20231221.mrc (#1) using
    32953 7501 atoms 
    32954 average map value = 0.002923, steps = 88 
    32955 shifted from previous position = 0.0061 
    32956 rotated from previous position = 0.0174 degrees 
    32957 atoms outside contour = 4239, contour level = 0.0026099 
    32958  
    32959 Position of CopB_Q9JIF7.pdb (#4) relative to postprocess_20231221.mrc (#1)
    32960 coordinates: 
    32961 Matrix rotation and translation 
    32962 -0.04184488 -0.73286543 0.67908561 172.35866702 
    32963 -0.03830325 0.68035797 0.73187833 204.56322632 
    32964 -0.99838964 0.00461417 -0.05654063 236.24556931 
    32965 Axis -0.37184514 0.85768149 0.35512484 
    32966 Axis point 209.22469544 0.00000000 -39.73577931 
    32967 Rotation angle (degrees) 102.06456279 
    32968 Shift along axis 195.25603077 
    32969  
    32970 
    32971 > select subtract #4
    32972 
    32973 Nothing selected 
    32974 
    32975 > show #!25.2 models
    32976 
    32977 > hide #4 models
    32978 
    32979 > fitmap #25.2 inMap #1
    32980 
    32981 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    32982 postprocess_20231221.mrc (#1) using 3198 atoms 
    32983 average map value = 0.004719, steps = 2000 
    32984 shifted from previous position = 0.362 
    32985 rotated from previous position = 0.363 degrees 
    32986 atoms outside contour = 834, contour level = 0.0026099 
    32987  
    32988 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    32989 postprocess_20231221.mrc (#1) coordinates: 
    32990 Matrix rotation and translation 
    32991 -0.50636564 0.85675765 -0.09777602 169.57780713 
    32992 -0.86012716 -0.50990038 -0.01352292 371.25526671 
    32993 -0.06144189 0.07725227 0.99511656 115.74602408 
    32994 Axis 0.05278650 -0.02112859 -0.99838228 
    32995 Axis point 192.99162836 134.33980830 0.00000000 
    32996 Rotation angle (degrees) 120.70211983 
    32997 Shift along axis -114.45145959 
    32998  
    32999 
    33000 > fitmap #25.2 inMap #1
    33001 
    33002 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    33003 postprocess_20231221.mrc (#1) using 3198 atoms 
    33004 average map value = 0.00482, steps = 536 
    33005 shifted from previous position = 1.23 
    33006 rotated from previous position = 1.72 degrees 
    33007 atoms outside contour = 799, contour level = 0.0026099 
    33008  
    33009 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    33010 postprocess_20231221.mrc (#1) coordinates: 
    33011 Matrix rotation and translation 
    33012 -0.49464042 0.86526798 -0.08149953 165.39425343 
    33013 -0.86837674 -0.49587111 0.00580183 369.24428351 
    33014 -0.03539312 0.07364212 0.99665649 111.40460245 
    33015 Axis 0.03908787 -0.02656536 -0.99888259 
    33016 Axis point 191.14127299 133.84616419 0.00000000 
    33017 Rotation angle (degrees) 119.79693397 
    33018 Shift along axis -114.62431386 
    33019  
    33020 
    33021 > fitmap #25.2 inMap #1
    33022 
    33023 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    33024 postprocess_20231221.mrc (#1) using 3198 atoms 
    33025 average map value = 0.004821, steps = 980 
    33026 shifted from previous position = 0.0229 
    33027 rotated from previous position = 0.0197 degrees 
    33028 atoms outside contour = 800, contour level = 0.0026099 
    33029  
    33030 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    33031 postprocess_20231221.mrc (#1) coordinates: 
    33032 Matrix rotation and translation 
    33033 -0.49468130 0.86527653 -0.08115991 165.37085423 
    33034 -0.86836176 -0.49589685 0.00584550 369.25692230 
    33035 -0.03518897 0.07336782 0.99668395 111.40497384 
    33036 Axis 0.03890517 -0.02648764 -0.99889178 
    33037 Axis point 191.12185163 133.87138068 0.00000000 
    33038 Rotation angle (degrees) 119.79822657 
    33039 Shift along axis -114.62847805 
    33040  
    33041 
    33042 > fitmap #25.2 inMap #1
    33043 
    33044 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    33045 postprocess_20231221.mrc (#1) using 3198 atoms 
    33046 average map value = 0.004749, steps = 2000 
    33047 shifted from previous position = 0.642 
    33048 rotated from previous position = 0.636 degrees 
    33049 atoms outside contour = 800, contour level = 0.0026099 
    33050  
    33051 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    33052 postprocess_20231221.mrc (#1) coordinates: 
    33053 Matrix rotation and translation 
    33054 -0.49149695 0.86624681 -0.08970622 165.57569659 
    33055 -0.87021696 -0.49252729 0.01180287 368.01917561 
    33056 -0.03395856 0.08386495 0.99589833 110.70394502 
    33057 Axis 0.04144232 -0.03206003 -0.99862640 
    33058 Axis point 191.23240381 132.59584765 0.00000000 
    33059 Rotation angle (degrees) 119.60797979 
    33060 Shift along axis -115.48874741 
    33061  
    33062 
    33063 > fitmap #25.2 inMap #1
    33064 
    33065 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    33066 postprocess_20231221.mrc (#1) using 3198 atoms 
    33067 average map value = 0.004719, steps = 2000 
    33068 shifted from previous position = 0.813 
    33069 rotated from previous position = 1.91 degrees 
    33070 atoms outside contour = 835, contour level = 0.0026099 
    33071  
    33072 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    33073 postprocess_20231221.mrc (#1) coordinates: 
    33074 Matrix rotation and translation 
    33075 -0.50634022 0.85677189 -0.09778293 169.57700834 
    33076 -0.86013886 -0.50987927 -0.01357418 371.26630152 
    33077 -0.06148747 0.07723375 0.99511518 115.75480340 
    33078 Axis 0.05280471 -0.02110577 -0.99838179 
    33079 Axis point 192.99968517 134.34467403 0.00000000 
    33080 Rotation angle (degrees) 120.70061558 
    33081 Shift along axis -114.44888593 
    33082  
    33083 
    33084 > fitmap #25.2 inMap #1
    33085 
    33086 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    33087 postprocess_20231221.mrc (#1) using 3198 atoms 
    33088 average map value = 0.004725, steps = 2000 
    33089 shifted from previous position = 0.191 
    33090 rotated from previous position = 0.172 degrees 
    33091 atoms outside contour = 847, contour level = 0.0026099 
    33092  
    33093 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    33094 postprocess_20231221.mrc (#1) coordinates: 
    33095 Matrix rotation and translation 
    33096 -0.50743553 0.85643414 -0.09502485 169.28322407 
    33097 -0.85961565 -0.51077340 -0.01309400 371.31505890 
    33098 -0.05975031 0.07504049 0.99538877 115.80005830 
    33099 Axis 0.05128053 -0.02052428 -0.99847337 
    33100 Axis point 192.66583518 134.59673048 0.00000000 
    33101 Rotation angle (degrees) 120.75780048 
    33102 Shift along axis -114.56331573 
    33103  
    33104 
    33105 > fitmap #25.2 inMap #1
    33106 
    33107 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    33108 postprocess_20231221.mrc (#1) using 3198 atoms 
    33109 average map value = 0.004741, steps = 2000 
    33110 shifted from previous position = 1.14 
    33111 rotated from previous position = 0.899 degrees 
    33112 atoms outside contour = 953, contour level = 0.0026099 
    33113  
    33114 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    33115 postprocess_20231221.mrc (#1) coordinates: 
    33116 Matrix rotation and translation 
    33117 -0.50305498 0.85978935 -0.08773792 167.88037321 
    33118 -0.86307723 -0.50507115 -0.00090608 370.78933379 
    33119 -0.04509293 0.07526879 0.99614317 113.45485580 
    33120 Axis 0.04415738 -0.02472063 -0.99871869 
    33121 Axis point 191.95152599 134.39625416 0.00000000 
    33122 Rotation angle (degrees) 120.39719134 
    33123 Shift along axis -115.06247320 
    33124  
    33125 
    33126 > fitmap #25.2 inMap #1
    33127 
    33128 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    33129 postprocess_20231221.mrc (#1) using 3198 atoms 
    33130 average map value = 0.004765, steps = 2000 
    33131 shifted from previous position = 1.01 
    33132 rotated from previous position = 0.423 degrees 
    33133 atoms outside contour = 866, contour level = 0.0026099 
    33134  
    33135 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    33136 postprocess_20231221.mrc (#1) coordinates: 
    33137 Matrix rotation and translation 
    33138 -0.50359516 0.86000616 -0.08234871 167.51856402 
    33139 -0.86267696 -0.50572126 -0.00587080 370.87795232 
    33140 -0.04669441 0.06808383 0.99658628 113.43225743 
    33141 Axis 0.04288124 -0.02067349 -0.99886626 
    33142 Axis point 191.79511786 134.86449404 0.00000000 
    33143 Rotation angle (degrees) 120.42201089 
    33144 Shift along axis -113.78759381 
    33145  
    33146 
    33147 > fitmap #25.2 inMap #1
    33148 
    33149 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    33150 postprocess_20231221.mrc (#1) using 3198 atoms 
    33151 average map value = 0.004745, steps = 2000 
    33152 shifted from previous position = 0.934 
    33153 rotated from previous position = 1.35 degrees 
    33154 atoms outside contour = 798, contour level = 0.0026099 
    33155  
    33156 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    33157 postprocess_20231221.mrc (#1) coordinates: 
    33158 Matrix rotation and translation 
    33159 -0.49260004 0.86554228 -0.09045301 165.87029937 
    33160 -0.86955802 -0.49370059 0.01133828 368.05758140 
    33161 -0.03484294 0.08423937 0.99583617 110.84105115 
    33162 Axis 0.04195695 -0.03200540 -0.99860666 
    33163 Axis point 191.26189535 132.58842921 0.00000000 
    33164 Rotation angle (degrees) 119.68506517 
    33165 Shift along axis -115.50703149 
    33166  
    33167 
    33168 > fitmap #25.2 inMap #1
    33169 
    33170 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    33171 postprocess_20231221.mrc (#1) using 3198 atoms 
    33172 average map value = 0.004715, steps = 2000 
    33173 shifted from previous position = 0.551 
    33174 rotated from previous position = 1.08 degrees 
    33175 atoms outside contour = 806, contour level = 0.0026099 
    33176  
    33177 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    33178 postprocess_20231221.mrc (#1) coordinates: 
    33179 Matrix rotation and translation 
    33180 -0.49691031 0.86175197 -0.10229205 168.08104532 
    33181 -0.86621925 -0.49966190 -0.00147959 369.47644931 
    33182 -0.05238647 0.08787212 0.99475330 113.38812739 
    33183 Axis 0.05161856 -0.02883050 -0.99825063 
    33184 Axis point 192.72913075 132.83692567 0.00000000 
    33185 Rotation angle (degrees) 120.06018753 
    33186 Shift along axis -115.16585742 
    33187  
    33188 
    33189 > fitmap #25.2 inMap #1
    33190 
    33191 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    33192 postprocess_20231221.mrc (#1) using 3198 atoms 
    33193 average map value = 0.004723, steps = 2000 
    33194 shifted from previous position = 1.52 
    33195 rotated from previous position = 0.873 degrees 
    33196 atoms outside contour = 968, contour level = 0.0026099 
    33197  
    33198 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    33199 postprocess_20231221.mrc (#1) coordinates: 
    33200 Matrix rotation and translation 
    33201 -0.50092577 0.86104342 -0.08762183 167.41226756 
    33202 -0.86432877 -0.50292643 -0.00087810 370.87113815 
    33203 -0.04482342 0.07529420 0.99615342 113.44095535 
    33204 Axis 0.04409183 -0.02477358 -0.99872027 
    33205 Axis point 192.03852716 134.42788571 0.00000000 
    33206 Rotation angle (degrees) 120.25500255 
    33207 Shift along axis -115.10207321 
    33208  
    33209 
    33210 > hide #!25.2 models
    33211 
    33212 > show #25.3 models
    33213 
    33214 > fitmap #25.3 inMap #1
    33215 
    33216 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    33217 postprocess_20231221.mrc (#1) using 3371 atoms 
    33218 average map value = 0.004368, steps = 44 
    33219 shifted from previous position = 0.054 
    33220 rotated from previous position = 0.0481 degrees 
    33221 atoms outside contour = 737, contour level = 0.0026099 
    33222  
    33223 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    33224 postprocess_20231221.mrc (#1) coordinates: 
    33225 Matrix rotation and translation 
    33226 -0.47518849 0.87648454 -0.07727061 158.58564377 
    33227 -0.87871888 -0.47724366 -0.00957144 369.81381560 
    33228 -0.04526613 0.06335090 0.99696421 112.93537532 
    33229 Axis 0.04150368 -0.01821532 -0.99897230 
    33230 Axis point 191.06573654 135.29446658 0.00000000 
    33231 Rotation angle (degrees) 118.53750854 
    33232 Shift along axis -112.97369921 
    33233  
    33234 
    33235 > fitmap #25.3 inMap #1
    33236 
    33237 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    33238 postprocess_20231221.mrc (#1) using 3371 atoms 
    33239 average map value = 0.004368, steps = 64 
    33240 shifted from previous position = 0.0507 
    33241 rotated from previous position = 0.0272 degrees 
    33242 atoms outside contour = 732, contour level = 0.0026099 
    33243  
    33244 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    33245 postprocess_20231221.mrc (#1) coordinates: 
    33246 Matrix rotation and translation 
    33247 -0.47532486 0.87644646 -0.07686258 158.53837832 
    33248 -0.87864630 -0.47737353 -0.00975648 369.87524863 
    33249 -0.04524320 0.06289752 0.99699395 112.94969031 
    33250 Axis 0.04135398 -0.01799746 -0.99898245 
    33251 Axis point 191.04184026 135.36488118 0.00000000 
    33252 Rotation angle (degrees) 118.54522094 
    33253 Shift along axis -112.93537940 
    33254  
    33255 
    33256 > fitmap #25.3 inMap #1
    33257 
    33258 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    33259 postprocess_20231221.mrc (#1) using 3371 atoms 
    33260 average map value = 0.004368, steps = 48 
    33261 shifted from previous position = 0.0187 
    33262 rotated from previous position = 0.014 degrees 
    33263 atoms outside contour = 734, contour level = 0.0026099 
    33264  
    33265 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    33266 postprocess_20231221.mrc (#1) coordinates: 
    33267 Matrix rotation and translation 
    33268 -0.47527994 0.87646538 -0.07692468 158.52367551 
    33269 -0.87865859 -0.47734607 -0.00999032 369.89893637 
    33270 -0.04547587 0.06284233 0.99698685 113.00413809 
    33271 Axis 0.04145483 -0.01790001 -0.99898002 
    33272 Axis point 191.05652571 135.38051906 0.00000000 
    33273 Rotation angle (degrees) 118.54309199 
    33274 Shift along axis -112.93849955 
    33275  
    33276 
    33277 > fitmap #25.3 inMap #1
    33278 
    33279 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    33280 postprocess_20231221.mrc (#1) using 3371 atoms 
    33281 average map value = 0.004368, steps = 44 
    33282 shifted from previous position = 0.0384 
    33283 rotated from previous position = 0.0184 degrees 
    33284 atoms outside contour = 734, contour level = 0.0026099 
    33285  
    33286 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    33287 postprocess_20231221.mrc (#1) coordinates: 
    33288 Matrix rotation and translation 
    33289 -0.47533018 0.87642335 -0.07709296 158.58640517 
    33290 -0.87863936 -0.47738704 -0.00972003 369.84429471 
    33291 -0.04532204 0.06311669 0.99697652 112.96267918 
    33292 Axis 0.04145844 -0.01808392 -0.99897656 
    33293 Axis point 191.05786763 135.32713922 0.00000000 
    33294 Rotation angle (degrees) 118.54640344 
    33295 Shift along axis -112.96055642 
    33296  
    33297 
    33298 > fitmap #25.3 inMap #1
    33299 
    33300 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    33301 postprocess_20231221.mrc (#1) using 3371 atoms 
    33302 average map value = 0.004368, steps = 64 
    33303 shifted from previous position = 0.0441 
    33304 rotated from previous position = 0.0294 degrees 
    33305 atoms outside contour = 730, contour level = 0.0026099 
    33306  
    33307 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    33308 postprocess_20231221.mrc (#1) coordinates: 
    33309 Matrix rotation and translation 
    33310 -0.47515651 0.87654065 -0.07682952 158.48449319 
    33311 -0.87872211 -0.47722632 -0.01012294 369.92210555 
    33312 -0.04553824 0.06270182 0.99699285 113.05181481 
    33313 Axis 0.04144714 -0.01780898 -0.99898197 
    33314 Axis point 191.06480286 135.40078755 0.00000000 
    33315 Rotation angle (degrees) 118.53496621 
    33316 Shift along axis -112.95592957 
    33317  
    33318 
    33319 > fitmap #25.3 inMap #1
    33320 
    33321 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    33322 postprocess_20231221.mrc (#1) using 3371 atoms 
    33323 average map value = 0.004368, steps = 40 
    33324 shifted from previous position = 0.0416 
    33325 rotated from previous position = 0.0456 degrees 
    33326 atoms outside contour = 732, contour level = 0.0026099 
    33327  
    33328 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    33329 postprocess_20231221.mrc (#1) coordinates: 
    33330 Matrix rotation and translation 
    33331 -0.47560906 0.87630331 -0.07673663 158.57882732 
    33332 -0.87850696 -0.47763542 -0.00948209 369.84754069 
    33333 -0.04496132 0.06290389 0.99700630 112.89946853 
    33334 Axis 0.04120824 -0.01808920 -0.99898682 
    33335 Axis point 191.00310529 135.35610620 0.00000000 
    33336 Rotation angle (degrees) 118.56262877 
    33337 Shift along axis -112.94057261 
    33338  
    33339 
    33340 > fitmap #25.3 inMap #1
    33341 
    33342 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    33343 postprocess_20231221.mrc (#1) using 3371 atoms 
    33344 average map value = 0.004368, steps = 76 
    33345 shifted from previous position = 0.0448 
    33346 rotated from previous position = 0.0311 degrees 
    33347 atoms outside contour = 734, contour level = 0.0026099 
    33348  
    33349 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    33350 postprocess_20231221.mrc (#1) coordinates: 
    33351 Matrix rotation and translation 
    33352 -0.47526730 0.87645852 -0.07708070 158.57002802 
    33353 -0.87867486 -0.47732212 -0.00969911 369.83916504 
    33354 -0.04529319 0.06311920 0.99697767 112.96112486 
    33355 Axis 0.04144632 -0.01809263 -0.99897691 
    33356 Axis point 191.05622279 135.32528255 0.00000000 
    33357 Rotation angle (degrees) 118.54219836 
    33358 Shift along axis -112.96477632 
    33359  
    33360 
    33361 > fitmap #25.3 inMap #1
    33362 
    33363 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    33364 postprocess_20231221.mrc (#1) using 3371 atoms 
    33365 average map value = 0.004368, steps = 64 
    33366 shifted from previous position = 0.0132 
    33367 rotated from previous position = 0.0162 degrees 
    33368 atoms outside contour = 735, contour level = 0.0026099 
    33369  
    33370 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    33371 postprocess_20231221.mrc (#1) coordinates: 
    33372 Matrix rotation and translation 
    33373 -0.47517741 0.87648910 -0.07728691 158.58719798 
    33374 -0.87872597 -0.47723124 -0.00953915 369.80660124 
    33375 -0.04524469 0.06338123 0.99696325 112.92983269 
    33376 Axis 0.04150227 -0.01823667 -0.99897196 
    33377 Axis point 191.06507637 135.28853304 0.00000000 
    33378 Rotation angle (degrees) 118.53677364 
    33379 Shift along axis -112.97604896 
    33380  
    33381 
    33382 > fitmap #25.3 inMap #1
    33383 
    33384 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    33385 postprocess_20231221.mrc (#1) using 3371 atoms 
    33386 average map value = 0.004368, steps = 48 
    33387 shifted from previous position = 0.00626 
    33388 rotated from previous position = 0.0138 degrees 
    33389 atoms outside contour = 734, contour level = 0.0026099 
    33390  
    33391 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    33392 postprocess_20231221.mrc (#1) coordinates: 
    33393 Matrix rotation and translation 
    33394 -0.47524832 0.87646522 -0.07712165 158.57460902 
    33395 -0.87868451 -0.47730450 -0.00969196 369.83142480 
    33396 -0.04530518 0.06315951 0.99697457 112.96672946 
    33397 Axis 0.04146476 -0.01810893 -0.99897585 
    33398 Axis point 191.05927194 135.31724824 0.00000000 
    33399 Rotation angle (degrees) 118.54110551 
    33400 Shift along axis -112.97302762 
    33401  
    33402 
    33403 > fitmap #25.3 inMap #1
    33404 
    33405 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    33406 postprocess_20231221.mrc (#1) using 3371 atoms 
    33407 average map value = 0.004368, steps = 60 
    33408 shifted from previous position = 0.0518 
    33409 rotated from previous position = 0.0162 degrees 
    33410 atoms outside contour = 732, contour level = 0.0026099 
    33411  
    33412 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    33413 postprocess_20231221.mrc (#1) coordinates: 
    33414 Matrix rotation and translation 
    33415 -0.47535329 0.87643098 -0.07686337 158.54627710 
    33416 -0.87863301 -0.47739898 -0.00970769 369.87016193 
    33417 -0.04520261 0.06292011 0.99699437 112.94058206 
    33418 Axis 0.04133975 -0.01802130 -0.99898261 
    33419 Axis point 191.03866438 135.36087099 0.00000000 
    33420 Rotation angle (degrees) 118.54696470 
    33421 Shift along axis -112.93695699 
    33422  
    33423 
    33424 > hide #25.3 models
    33425 
    33426 > show #!25.4 models
    33427 
    33428 > fitmap #25.4 inMap #1
    33429 
    33430 Fit molecule 5nzr_COPI_coat_leaf_2017.cif D (#25.4) to map
    33431 postprocess_20231221.mrc (#1) using 706 atoms 
    33432 average map value = 0.005749, steps = 44 
    33433 shifted from previous position = 0.0483 
    33434 rotated from previous position = 0.0777 degrees 
    33435 atoms outside contour = 92, contour level = 0.0026099 
    33436  
    33437 Position of 5nzr_COPI_coat_leaf_2017.cif D (#25.4) relative to
    33438 postprocess_20231221.mrc (#1) coordinates: 
    33439 Matrix rotation and translation 
    33440 -0.49175644 0.86568701 -0.09360338 166.01477332 
    33441 -0.87058599 -0.49079828 0.03459883 365.70599887 
    33442 -0.01598862 0.09850399 0.99500820 106.55878534 
    33443 Axis 0.03674439 -0.04462718 -0.99832773 
    33444 Axis point 190.07626131 130.81897209 0.00000000 
    33445 Rotation angle (degrees) 119.58889033 
    33446 Shift along axis -116.60090709 
    33447  
    33448 
    33449 > fitmap #25.4 inMap #1
    33450 
    33451 Fit molecule 5nzr_COPI_coat_leaf_2017.cif D (#25.4) to map
    33452 postprocess_20231221.mrc (#1) using 706 atoms 
    33453 average map value = 0.005749, steps = 44 
    33454 shifted from previous position = 0.00111 
    33455 rotated from previous position = 0.00328 degrees 
    33456 atoms outside contour = 92, contour level = 0.0026099 
    33457  
    33458 Position of 5nzr_COPI_coat_leaf_2017.cif D (#25.4) relative to
    33459 postprocess_20231221.mrc (#1) coordinates: 
    33460 Matrix rotation and translation 
    33461 -0.49177182 0.86567510 -0.09363271 166.02076157 
    33462 -0.87057630 -0.49081850 0.03455563 365.70949473 
    33463 -0.01604272 0.09850790 0.99500694 106.56690226 
    33464 Axis 0.03677193 -0.04461348 -0.99832733 
    33465 Axis point 190.07986149 130.81979432 0.00000000 
    33466 Rotation angle (degrees) 119.59010474 
    33467 Shift along axis -116.59931997 
    33468  
    33469 
    33470 > hide #!25.4 models
    33471 
    33472 > show #8 models
    33473 
    33474 > fitmap #8 inMap #1
    33475 
    33476 Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462
    33477 atoms 
    33478 average map value = 0.003728, steps = 56 
    33479 shifted from previous position = 0.0299 
    33480 rotated from previous position = 0.0476 degrees 
    33481 atoms outside contour = 697, contour level = 0.0026099 
    33482  
    33483 Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1)
    33484 coordinates: 
    33485 Matrix rotation and translation 
    33486 0.23860010 0.93122280 0.27548884 -92.93313357 
    33487 -0.88661028 0.09314362 0.45304137 105.82589483 
    33488 0.39622242 -0.35234695 0.84785578 472.48356496 
    33489 Axis -0.40432771 -0.06061167 -0.91260360 
    33490 Axis point -102.22586219 189.90213751 0.00000000 
    33491 Rotation angle (degrees) 84.84791292 
    33492 Shift along axis -400.02904637 
    33493  
    33494 
    33495 > fitmap #8 inMap #1
    33496 
    33497 Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462
    33498 atoms 
    33499 average map value = 0.003728, steps = 44 
    33500 shifted from previous position = 0.0631 
    33501 rotated from previous position = 0.119 degrees 
    33502 atoms outside contour = 699, contour level = 0.0026099 
    33503  
    33504 Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1)
    33505 coordinates: 
    33506 Matrix rotation and translation 
    33507 0.23980372 0.93133895 0.27404734 -92.97708941 
    33508 -0.88584969 0.09442385 0.45426257 105.58989849 
    33509 0.39719582 -0.35169860 0.84766950 472.32860191 
    33510 Axis -0.40465765 -0.06183049 -0.91237557 
    33511 Axis point -102.68373743 189.74615125 0.00000000 
    33512 Rotation angle (degrees) 84.78182200 
    33513 Shift along axis -399.84586167 
    33514  
    33515 
    33516 > hide #8 models
    33517 
    33518 > show #!9 models
    33519 
    33520 > fitmap #9 inMap #1
    33521 
    33522 Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673
    33523 atoms 
    33524 average map value = 0.003524, steps = 48 
    33525 shifted from previous position = 0.0589 
    33526 rotated from previous position = 0.0374 degrees 
    33527 atoms outside contour = 3625, contour level = 0.0026099 
    33528  
    33529 Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1)
    33530 coordinates: 
    33531 Matrix rotation and translation 
    33532 0.48869765 -0.51171806 -0.70662524 223.57914699 
    33533 0.54907211 -0.44902694 0.70490752 282.28473714 
    33534 -0.67800769 -0.73247486 0.06153171 258.72752902 
    33535 Axis -0.80450694 -0.01601733 0.59372723 
    33536 Axis point 0.00000000 245.02451097 103.92196750 
    33537 Rotation angle (degrees) 116.70511792 
    33538 Shift along axis -30.77884326 
    33539  
    33540 
    33541 > fitmap #9 inMap #1
    33542 
    33543 Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673
    33544 atoms 
    33545 average map value = 0.003524, steps = 44 
    33546 shifted from previous position = 0.0104 
    33547 rotated from previous position = 0.00895 degrees 
    33548 atoms outside contour = 3621, contour level = 0.0026099 
    33549  
    33550 Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1)
    33551 coordinates: 
    33552 Matrix rotation and translation 
    33553 0.48883282 -0.51165712 -0.70657587 223.57062704 
    33554 0.54903299 -0.44898430 0.70496515 282.29045776 
    33555 -0.67794192 -0.73254357 0.06143838 258.72873284 
    33556 Axis -0.80455852 -0.01602612 0.59365711 
    33557 Axis point 0.00000000 245.03043827 103.90366345 
    33558 Rotation angle (degrees) 116.70240841 
    33559 Shift along axis -30.80352213 
    33560  
    33561 
    33562 > hide #!9 models
    33563 
    33564 > show #!25.6 models
    33565 
    33566 > fitmap #9 inMap #1
    33567 
    33568 Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673
    33569 atoms 
    33570 average map value = 0.003524, steps = 40 
    33571 shifted from previous position = 0.0495 
    33572 rotated from previous position = 0.0484 degrees 
    33573 atoms outside contour = 3619, contour level = 0.0026099 
    33574  
    33575 Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1)
    33576 coordinates: 
    33577 Matrix rotation and translation 
    33578 0.48948640 -0.51114897 -0.70649118 223.51703606 
    33579 0.54884026 -0.44899469 0.70510860 282.30192656 
    33580 -0.67762633 -0.73289187 0.06076234 258.73320035 
    33581 Axis -0.80484119 -0.01615551 0.59327031 
    33582 Axis point 0.00000000 245.01224896 103.84167427 
    33583 Rotation angle (degrees) 116.70346172 
    33584 Shift along axis -30.95772135 
    33585  
    33586 
    33587 > fitmap #9 inMap #1
    33588 
    33589 Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673
    33590 atoms 
    33591 average map value = 0.003524, steps = 44 
    33592 shifted from previous position = 0.0542 
    33593 rotated from previous position = 0.0567 degrees 
    33594 atoms outside contour = 3613, contour level = 0.0026099 
    33595  
    33596 Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1)
    33597 coordinates: 
    33598 Matrix rotation and translation 
    33599 0.48878646 -0.51166535 -0.70660198 223.57207532 
    33600 0.54926427 -0.44877614 0.70491754 282.27235203 
    33601 -0.67778799 -0.73266537 0.06168380 258.74790944 
    33602 Axis -0.80450784 -0.01612504 0.59372311 
    33603 Axis point 0.00000000 245.04686971 103.90184910 
    33604 Rotation angle (degrees) 116.68935055 
    33605 Shift along axis -30.79252770 
    33606  
    33607 
    33608 > fitmap #9 inMap #1
    33609 
    33610 Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673
    33611 atoms 
    33612 average map value = 0.003524, steps = 48 
    33613 shifted from previous position = 0.014 
    33614 rotated from previous position = 0.0161 degrees 
    33615 atoms outside contour = 3623, contour level = 0.0026099 
    33616  
    33617 Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1)
    33618 coordinates: 
    33619 Matrix rotation and translation 
    33620 0.48880777 -0.51161079 -0.70662675 223.57376434 
    33621 0.54909324 -0.44899243 0.70491305 282.28181295 
    33622 -0.67791119 -0.73257094 0.06145103 258.72889521 
    33623 Axis -0.80454933 -0.01607189 0.59366832 
    33624 Axis point 0.00000000 245.02207305 103.91147262 
    33625 Rotation angle (degrees) 116.70306678 
    33626 Shift along axis -30.81377494 
    33627  
    33628 
    33629 > fitmap #9 inMap #1
    33630 
    33631 Fit molecule CopG_Q9QZE5 (#9) to map postprocess_20231221.mrc (#1) using 6673
    33632 atoms 
    33633 average map value = 0.003524, steps = 40 
    33634 shifted from previous position = 0.0168 
    33635 rotated from previous position = 0.00674 degrees 
    33636 atoms outside contour = 3620, contour level = 0.0026099 
    33637  
    33638 Position of CopG_Q9QZE5 (#9) relative to postprocess_20231221.mrc (#1)
    33639 coordinates: 
    33640 Matrix rotation and translation 
    33641 0.48884254 -0.51164875 -0.70657521 223.56186580 
    33642 0.54899521 -0.44902301 0.70496992 282.29147811 
    33643 -0.67796550 -0.73252570 0.06139116 258.73202214 
    33644 Axis -0.80456844 -0.01601289 0.59364401 
    33645 Axis point 0.00000000 245.02601416 103.90513276 
    33646 Rotation angle (degrees) 116.70485206 
    33647 Shift along axis -30.79641215 
    33648  
    33649 
    33650 > hide #!25.6 models
    33651 
    33652 > show #!25.7 models
    33653 
    33654 > fitmap #25.7 inMap #1
    33655 
    33656 Fit molecule 5nzr_COPI_coat_leaf_2017.cif K (#25.7) to map
    33657 postprocess_20231221.mrc (#1) using 2239 atoms 
    33658 average map value = 0.005453, steps = 68 
    33659 shifted from previous position = 5.09 
    33660 rotated from previous position = 3.83 degrees 
    33661 atoms outside contour = 897, contour level = 0.0026099 
    33662  
    33663 Position of 5nzr_COPI_coat_leaf_2017.cif K (#25.7) relative to
    33664 postprocess_20231221.mrc (#1) coordinates: 
    33665 Matrix rotation and translation 
    33666 -0.52809778 0.84897184 -0.01896147 162.25143821 
    33667 -0.84908305 -0.52756007 0.02717232 368.47098555 
    33668 0.01306522 0.03044950 0.99945091 106.79493761 
    33669 Axis 0.00192961 -0.01885742 -0.99982032 
    33670 Axis point 183.03405856 138.07720643 0.00000000 
    33671 Rotation angle (degrees) 121.87740335 
    33672 Shift along axis -113.41107829 
    33673  
    33674 
    33675 > fitmap #25.7 inMap #1
    33676 
    33677 Fit molecule 5nzr_COPI_coat_leaf_2017.cif K (#25.7) to map
    33678 postprocess_20231221.mrc (#1) using 2239 atoms 
    33679 average map value = 0.005454, steps = 44 
    33680 shifted from previous position = 0.0759 
    33681 rotated from previous position = 0.124 degrees 
    33682 atoms outside contour = 905, contour level = 0.0026099 
    33683  
    33684 Position of 5nzr_COPI_coat_leaf_2017.cif K (#25.7) relative to
    33685 postprocess_20231221.mrc (#1) coordinates: 
    33686 Matrix rotation and translation 
    33687 -0.52840627 0.84882470 -0.01683532 162.07563992 
    33688 -0.84887694 -0.52790507 0.02691033 368.52314419 
    33689 0.01395470 0.02851070 0.99949607 107.05091473 
    33690 Axis 0.00094251 -0.01813331 -0.99983513 
    33691 Axis point 182.88564640 138.23925690 0.00000000 
    33692 Rotation angle (degrees) 121.89792835 
    33693 Shift along axis -113.56305017 
    33694  
    33695 
    33696 > hide #!25.7 models
    33697 
    33698 > show #25.8 models
    33699 
    33700 > fitmap #25.8 inMap #1
    33701 
    33702 Fit molecule 5nzr_COPI_coat_leaf_2017.cif L (#25.8) to map
    33703 postprocess_20231221.mrc (#1) using 555 atoms 
    33704 average map value = 0.009445, steps = 72 
    33705 shifted from previous position = 4.8 
    33706 rotated from previous position = 5.37 degrees 
    33707 atoms outside contour = 61, contour level = 0.0026099 
    33708  
    33709 Position of 5nzr_COPI_coat_leaf_2017.cif L (#25.8) relative to
    33710 postprocess_20231221.mrc (#1) coordinates: 
    33711 Matrix rotation and translation 
    33712 -0.50953081 0.86016443 -0.02225986 156.84466949 
    33713 -0.86007521 -0.50837107 0.04277251 364.92411960 
    33714 0.02547512 0.04093906 0.99883682 103.35018694 
    33715 Axis -0.00106540 -0.02773834 -0.99961465 
    33716 Axis point 181.51446483 136.34374262 0.00000000 
    33717 Rotation angle (degrees) 120.63269672 
    33718 Shift along axis -113.59985176 
    33719  
    33720 
    33721 > hide #25.8 models
    33722 
    33723 > show #25.9 models
    33724 
    33725 > fitmap #25.9 inMap #1
    33726 
    33727 Fit molecule 5nzr_COPI_coat_leaf_2017.cif M (#25.9) to map
    33728 postprocess_20231221.mrc (#1) using 635 atoms 
    33729 average map value = 0.005017, steps = 64 
    33730 shifted from previous position = 2.67 
    33731 rotated from previous position = 5.57 degrees 
    33732 atoms outside contour = 32, contour level = 0.0026099 
    33733  
    33734 Position of 5nzr_COPI_coat_leaf_2017.cif M (#25.9) relative to
    33735 postprocess_20231221.mrc (#1) coordinates: 
    33736 Matrix rotation and translation 
    33737 -0.54245973 0.83717279 0.06985093 157.30691966 
    33738 -0.83809913 -0.54501467 0.02342739 368.53850958 
    33739 0.05768256 -0.04583358 0.99728230 115.07742252 
    33740 Axis -0.04130675 0.00725713 -0.99912016 
    33741 Axis point 176.58181683 143.30451871 0.00000000 
    33742 Rotation angle (degrees) 123.03122791 
    33743 Shift along axis -118.79947888 
    33744  
    33745 
    33746 > hide #25.9 models
    33747 
    33748 > show #25.10 models
    33749 
    33750 > fitmap #25.10 inMap #1
    33751 
    33752 Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map
    33753 postprocess_20231221.mrc (#1) using 635 atoms 
    33754 average map value = 0.005793, steps = 60 
    33755 shifted from previous position = 1.15 
    33756 rotated from previous position = 1.46 degrees 
    33757 atoms outside contour = 78, contour level = 0.0026099 
    33758  
    33759 Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to
    33760 postprocess_20231221.mrc (#1) coordinates: 
    33761 Matrix rotation and translation 
    33762 -0.56117641 0.82769249 -0.00248451 165.77495010 
    33763 -0.82682250 -0.56071939 -0.04425285 376.49759487 
    33764 -0.03802086 -0.02277941 0.99901727 120.78977355 
    33765 Axis 0.01297461 0.02147165 -0.99968526 
    33766 Axis point 184.09818845 145.22408755 0.00000000 
    33767 Rotation angle (degrees) 124.15539123 
    33768 Shift along axis -110.51686734 
    33769  
    33770 
    33771 > fitmap #25.10 inMap #1
    33772 
    33773 Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map
    33774 postprocess_20231221.mrc (#1) using 635 atoms 
    33775 average map value = 0.005793, steps = 44 
    33776 shifted from previous position = 0.013 
    33777 rotated from previous position = 0.0303 degrees 
    33778 atoms outside contour = 78, contour level = 0.0026099 
    33779  
    33780 Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to
    33781 postprocess_20231221.mrc (#1) coordinates: 
    33782 Matrix rotation and translation 
    33783 -0.56102005 0.82779773 -0.00272041 165.76483812 
    33784 -0.82693876 -0.56058191 -0.04382006 376.44606227 
    33785 -0.03779916 -0.02233431 0.99903573 120.69649921 
    33786 Axis 0.01298038 0.02119244 -0.99969115 
    33787 Axis point 184.09340805 145.17307910 0.00000000 
    33788 Rotation angle (degrees) 124.14458036 
    33789 Shift along axis -110.52971987 
    33790  
    33791 
    33792 > hide #25.10 models
    33793 
    33794 > show #25.11 models
    33795 
    33796 > fitmap #25.11 inMap #1
    33797 
    33798 Fit molecule 5nzr_COPI_coat_leaf_2017.cif Z (#25.11) to map
    33799 postprocess_20231221.mrc (#1) using 555 atoms 
    33800 average map value = 0.006618, steps = 56 
    33801 shifted from previous position = 0.987 
    33802 rotated from previous position = 4.56 degrees 
    33803 atoms outside contour = 13, contour level = 0.0026099 
    33804  
    33805 Position of 5nzr_COPI_coat_leaf_2017.cif Z (#25.11) relative to
    33806 postprocess_20231221.mrc (#1) coordinates: 
    33807 Matrix rotation and translation 
    33808 -0.51534999 0.85618388 -0.03692622 163.83052471 
    33809 -0.85697829 -0.51478944 0.02408388 365.15179210 
    33810 0.00161100 0.04405659 0.99902773 110.02746277 
    33811 Axis 0.01165465 -0.02248757 -0.99967919 
    33812 Axis point 185.07392398 134.62747847 0.00000000 
    33813 Rotation angle (degrees) 121.03461621 
    33814 Shift along axis -116.29415434 
    33815  
    33816 
    33817 > fitmap #25.11 inMap #1
    33818 
    33819 Fit molecule 5nzr_COPI_coat_leaf_2017.cif Z (#25.11) to map
    33820 postprocess_20231221.mrc (#1) using 555 atoms 
    33821 average map value = 0.006619, steps = 56 
    33822 shifted from previous position = 0.0125 
    33823 rotated from previous position = 0.0228 degrees 
    33824 atoms outside contour = 13, contour level = 0.0026099 
    33825  
    33826 Position of 5nzr_COPI_coat_leaf_2017.cif Z (#25.11) relative to
    33827 postprocess_20231221.mrc (#1) coordinates: 
    33828 Matrix rotation and translation 
    33829 -0.51510414 0.85634315 -0.03666222 163.77587716 
    33830 -0.85712590 -0.51454655 0.02402157 365.14477906 
    33831 0.00170628 0.04379774 0.99903895 110.05636752 
    33832 Axis 0.01153794 -0.02238519 -0.99968284 
    33833 Axis point 185.07618372 134.63281353 0.00000000 
    33834 Rotation angle (degrees) 121.01790200 
    33835 Shift along axis -116.30566190 
    33836  
    33837 
    33838 > hide #25.11 models
    33839 
    33840 > hide #!26.1 models
    33841 
    33842 > show #!26.1 models
    33843 
    33844 > hide #!26.1 models
    33845 
    33846 > show #!26.1 models
    33847 
    33848 > fitmap #26.1 inMap #1
    33849 
    33850 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#26.1) to map
    33851 postprocess_20231221.mrc (#1) using 1306 atoms 
    33852 average map value = 0.00438, steps = 48 
    33853 shifted from previous position = 0.0519 
    33854 rotated from previous position = 0.127 degrees 
    33855 atoms outside contour = 335, contour level = 0.0026099 
    33856  
    33857 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#26.1) relative to
    33858 postprocess_20231221.mrc (#1) coordinates: 
    33859 Matrix rotation and translation 
    33860 -0.18847588 0.19690185 -0.96213642 281.01818938 
    33861 0.68066320 0.73240949 0.01655086 273.62397864 
    33862 0.70793675 -0.65177142 -0.27206537 179.30959236 
    33863 Axis -0.35878329 -0.89656497 0.25970329 
    33864 Axis point -12.14308848 0.00000000 195.36315833 
    33865 Rotation angle (degrees) 111.35010673 
    33866 Shift along axis -299.57901651 
    33867  
    33868 
    33869 > hide #!26.2 models
    33870 
    33871 > show #!26.2 models
    33872 
    33873 > fitmap #26.2 inMap #1
    33874 
    33875 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) to map
    33876 postprocess_20231221.mrc (#1) using 2069 atoms 
    33877 average map value = 0.005973, steps = 40 
    33878 shifted from previous position = 0.0411 
    33879 rotated from previous position = 0.0333 degrees 
    33880 atoms outside contour = 595, contour level = 0.0026099 
    33881  
    33882 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) relative to
    33883 postprocess_20231221.mrc (#1) coordinates: 
    33884 Matrix rotation and translation 
    33885 -0.25112743 0.19896442 -0.94728463 280.14955795 
    33886 0.70125958 0.71197797 -0.03636418 273.60673566 
    33887 0.66721061 -0.67342447 -0.31832291 179.23078798 
    33888 Axis -0.35257877 -0.89353670 0.27799349 
    33889 Axis point -6.18676783 0.00000000 194.69723932 
    33890 Rotation angle (degrees) 115.38738201 
    33891 Shift along axis -293.42745438 
    33892  
    33893 
    33894 > fitmap #26.3 inMap #1
    33895 
    33896 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) to map
    33897 postprocess_20231221.mrc (#1) using 1128 atoms 
    33898 average map value = 0.004508, steps = 44 
    33899 shifted from previous position = 0.0401 
    33900 rotated from previous position = 0.0984 degrees 
    33901 atoms outside contour = 321, contour level = 0.0026099 
    33902  
    33903 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) relative to
    33904 postprocess_20231221.mrc (#1) coordinates: 
    33905 Matrix rotation and translation 
    33906 -0.24788043 0.18304448 -0.95134116 278.85298200 
    33907 0.71427199 0.69794712 -0.05182019 272.73112847 
    33908 0.65450043 -0.69236155 -0.30375098 178.06704899 
    33909 Axis -0.35415396 -0.88786639 0.29371456 
    33910 Axis point -8.77830869 0.00000000 197.19185440 
    33911 Rotation angle (degrees) 115.26732127 
    33912 Shift along axis -288.60480618 
    33913  
    33914 
    33915 > fitmap #26.3 inMap #1
    33916 
    33917 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) to map
    33918 postprocess_20231221.mrc (#1) using 1128 atoms 
    33919 average map value = 0.004508, steps = 64 
    33920 shifted from previous position = 0.012 
    33921 rotated from previous position = 0.0352 degrees 
    33922 atoms outside contour = 318, contour level = 0.0026099 
    33923  
    33924 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) relative to
    33925 postprocess_20231221.mrc (#1) coordinates: 
    33926 Matrix rotation and translation 
    33927 -0.24796808 0.18246169 -0.95143027 278.83442524 
    33928 0.71425394 0.69792925 -0.05230738 272.75307943 
    33929 0.65448693 -0.69253338 -0.30338816 178.04496522 
    33930 Axis -0.35395583 -0.88784859 0.29400706 
    33931 Axis point -8.79177732 0.00000000 197.26697225 
    33932 Rotation angle (degrees) 115.25917032 
    33933 Shift along axis -288.51202928 
    33934  
    33935 
    33936 > hide #!26 models
    33937 
    33938 > hide #!26.1 models
    33939 
    33940 > hide #!26.2 models
    33941 
    33942 > hide #26.3 models
    33943 
    33944 > hide #!25 models
    33945 
    33946 > show #24 models
    33947 
    33948 > fitmap #24 inMap #1
    33949 
    33950 Fit molecule 3kn1_Golph3_xtal.cif (#24) to map postprocess_20231221.mrc (#1)
    33951 using 1934 atoms 
    33952 average map value = 0.003249, steps = 28 
    33953 shifted from previous position = 0.0375 
    33954 rotated from previous position = 0.0176 degrees 
    33955 atoms outside contour = 520, contour level = 0.0026099 
    33956  
    33957 Position of 3kn1_Golph3_xtal.cif (#24) relative to postprocess_20231221.mrc
    33958 (#1) coordinates: 
    33959 Matrix rotation and translation 
    33960 0.23176072 0.95684027 -0.17533874 148.11891218 
    33961 0.01096390 -0.18280423 -0.98308820 219.61211962 
    33962 -0.97271104 0.22591883 -0.05285755 161.82170270 
    33963 Axis 0.69893176 0.46096409 -0.54681487 
    33964 Axis point 0.00000000 -31.89182107 207.24160583 
    33965 Rotation angle (degrees) 120.12912994 
    33966 Shift along axis 116.27179801 
    33967  
    33968 
    33969 > fitmap #24 inMap #1
    33970 
    33971 Fit molecule 3kn1_Golph3_xtal.cif (#24) to map postprocess_20231221.mrc (#1)
    33972 using 1934 atoms 
    33973 average map value = 0.00325, steps = 28 
    33974 shifted from previous position = 0.0392 
    33975 rotated from previous position = 0.0284 degrees 
    33976 atoms outside contour = 520, contour level = 0.0026099 
    33977  
    33978 Position of 3kn1_Golph3_xtal.cif (#24) relative to postprocess_20231221.mrc
    33979 (#1) coordinates: 
    33980 Matrix rotation and translation 
    33981 0.23211744 0.95670781 -0.17558947 148.15930491 
    33982 0.01108837 -0.18311074 -0.98302976 219.64929055 
    33983 -0.97262456 0.22623135 -0.05311152 161.80787421 
    33984 Axis 0.69912644 0.46080066 -0.54670373 
    33985 Axis point 0.00000000 -31.82049284 207.20523321 
    33986 Rotation angle (degrees) 120.13587974 
    33987 Shift along axis 116.33565695 
    33988  
    33989 
    33990 > show #11 models
    33991 
    33992 > hide #24 models
    33993 
    33994 > fitmap #11 inMap #1
    33995 
    33996 Fit molecule Golph3_ Q9CRA5.pdb (#11) to map postprocess_20231221.mrc (#1)
    33997 using 2367 atoms 
    33998 average map value = 0.0031, steps = 48 
    33999 shifted from previous position = 0.0446 
    34000 rotated from previous position = 0.0524 degrees 
    34001 atoms outside contour = 802, contour level = 0.0026099 
    34002  
    34003 Position of Golph3_ Q9CRA5.pdb (#11) relative to postprocess_20231221.mrc (#1)
    34004 coordinates: 
    34005 Matrix rotation and translation 
    34006 0.66114170 -0.23531581 0.71240306 198.02073230 
    34007 -0.68852537 -0.56749706 0.45153062 233.21090068 
    34008 0.29803435 -0.78903330 -0.53721687 191.32348518 
    34009 Axis -0.89621076 0.29934910 -0.32740859 
    34010 Axis point 0.00000000 180.07923499 -4.24272432 
    34011 Rotation angle (degrees) 136.20214329 
    34012 Shift along axis -170.29778917 
    34013  
    34014 
    34015 > fitmap #11 inMap #1
    34016 
    34017 Fit molecule Golph3_ Q9CRA5.pdb (#11) to map postprocess_20231221.mrc (#1)
    34018 using 2367 atoms 
    34019 average map value = 0.0031, steps = 40 
    34020 shifted from previous position = 0.0266 
    34021 rotated from previous position = 0.0483 degrees 
    34022 atoms outside contour = 804, contour level = 0.0026099 
    34023  
    34024 Position of Golph3_ Q9CRA5.pdb (#11) relative to postprocess_20231221.mrc (#1)
    34025 coordinates: 
    34026 Matrix rotation and translation 
    34027 0.66078286 -0.23607293 0.71248549 198.03562590 
    34028 -0.68900494 -0.56730843 0.45103584 233.22569948 
    34029 0.29772167 -0.78894278 -0.53752310 191.33298066 
    34030 Axis -0.89610969 0.29974217 -0.32732561 
    34031 Axis point 0.00000000 180.13836515 -4.22165558 
    34032 Rotation angle (degrees) 136.22186734 
    34033 Shift along axis -170.18225266 
    34034  
    34035 
    34036 > hide #11 models
    34037 
    34038 > volume #1 level 0.003696
    34039 
    34040 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    34041 > dataset/Chimera sessions/20240212_leaf_fitting_v6.cxs"
    34042 
    34043 > open "/Users/becca/Desktop/Postdoc/Structure files/COPI
    34044 > structures/3mkq_yeast_alpha_betaprimeCOPI.cif"
    34045 
    34046 3mkq_yeast_alpha_betaprimeCOPI.cif title: 
    34047 Crystal structure of yeast alpha/betaprime-COP subcomplex of the COPI
    34048 vesicular coat [more info...] 
    34049  
    34050 Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif #27 
    34051 --- 
    34052 Chain | Description | UniProt 
    34053 A C E | Coatomer beta'-subunit | A6ZU46_YEAS7 1-814 
    34054 B D F | Coatomer subunit alpha | COPA_YEAST 642-818 
    34055  
    34056 3mkq_yeast_alpha_betaprimeCOPI.cif mmCIF Assemblies 
    34057 --- 
    34058 1| author_defined_assembly 
    34059 2| software_defined_assembly 
    34060 3| software_defined_assembly 
    34061 4| software_defined_assembly 
    34062  
    34063 
    34064 > select add #27
    34065 
    34066 23730 atoms, 23992 bonds, 2 pseudobonds, 3231 residues, 2 models selected 
    34067 
    34068 > hide sel atoms
    34069 
    34070 > show sel cartoons
    34071 
    34072 > ui mousemode right "translate selected models"
    34073 
    34074 > view matrix models #27,1,0,0,392.67,0,1,0,238.34,0,0,1,282.33
    34075 
    34076 > view matrix models #27,1,0,0,417.09,0,1,0,317.03,0,0,1,269.19
    34077 
    34078 > view matrix models #27,1,0,0,396.35,0,1,0,248.96,0,0,1,148.11
    34079 
    34080 > view matrix models #27,1,0,0,352.36,0,1,0,262.58,0,0,1,140.07
    34081 
    34082 > select subtract #27
    34083 
    34084 Nothing selected 
    34085 
    34086 > select add #27
    34087 
    34088 23730 atoms, 23992 bonds, 2 pseudobonds, 3231 residues, 2 models selected 
    34089 
    34090 > select subtract #27
    34091 
    34092 Nothing selected 
    34093 
    34094 > hide #!27 models
    34095 
    34096 > open "/Users/becca/Desktop/Postdoc/Structure files/COPI
    34097 > structures/3mkr_yeast_alpha_epsilonCOPI.cif"
    34098 
    34099 3mkr_yeast_alpha_epsilonCOPI.cif title: 
    34100 Crystal structure of yeast alpha/epsilon-COP subcomplex of the COPI vesicular
    34101 coat [more info...] 
    34102  
    34103 Chain information for 3mkr_yeast_alpha_epsilonCOPI.cif #28 
    34104 --- 
    34105 Chain | Description | UniProt 
    34106 A | Coatomer subunit epsilon | COPE_BOVIN 17-307 
    34107 B | Coatomer subunit alpha | COPA_BOVIN 905-1224 
    34108  
    34109 
    34110 > select add #28
    34111 
    34112 4908 atoms, 4974 bonds, 645 residues, 1 model selected 
    34113 
    34114 > view matrix models #28,1,0,0,338.36,0,1,0,298.71,0,0,1,206.93
    34115 
    34116 > view matrix models #28,1,0,0,261.35,0,1,0,284.84,0,0,1,295.86
    34117 
    34118 > select subtract #28
    34119 
    34120 Nothing selected 
    34121 
    34122 > hide #28 models
    34123 
    34124 > open "/Users/becca/Desktop/Postdoc/Structure files/COPI
    34125 > structures/1pzd_Cow_Cterm_COPI_gamma.cif"
    34126 
    34127 1pzd_Cow_Cterm_COPI_gamma.cif title: 
    34128 Structural Identification of a conserved appendage domain in the carboxyl-
    34129 terminus of the COPI gamma-subunit. [more info...] 
    34130  
    34131 Chain information for 1pzd_Cow_Cterm_COPI_gamma.cif #29 
    34132 --- 
    34133 Chain | Description | UniProt 
    34134 A | Coatomer gamma subunit | COPG_BOVIN 555-874 
    34135  
    34136 Non-standard residues in 1pzd_Cow_Cterm_COPI_gamma.cif #29 
    34137 --- 
    34138 SO4 — sulfate ion 
    34139  
    34140 
    34141 > select add #29
    34142 
    34143 2270 atoms, 2156 bonds, 426 residues, 1 model selected 
    34144 
    34145 > view matrix models #29,1,0,0,234.68,0,1,0,350.63,0,0,1,60.953
    34146 
    34147 > view matrix models #29,1,0,0,415.01,0,1,0,436.04,0,0,1,263.89
    34148 
    34149 > view matrix models #29,1,0,0,353.18,0,1,0,323.73,0,0,1,357.15
    34150 
    34151 > select subtract #29
    34152 
    34153 Nothing selected 
    34154 
    34155 > hide #29 models
    34156 
    34157 > open "/Users/becca/Desktop/Postdoc/Structure files/COPI
    34158 > structures/4j87_yeast_alphaCOPI.cif"
    34159 
    34160 4j87_yeast_alphaCOPI.cif title: 
    34161 Crystal structure of alpha-COP [more info...] 
    34162  
    34163 Chain information for 4j87_yeast_alphaCOPI.cif #30 
    34164 --- 
    34165 Chain | Description | UniProt 
    34166 A | coatomer subunit alpha | COPA_SCHPO 1-327 
    34167  
    34168 
    34169 > select add #30
    34170 
    34171 2737 atoms, 2622 bonds, 1 pseudobond, 505 residues, 2 models selected 
    34172 
    34173 > view matrix models #30,1,0,0,419.29,0,1,0,126.53,0,0,1,226.78
    34174 
    34175 > view matrix models #30,1,0,0,249.55,0,1,0,194.59,0,0,1,357.2
    34176 
    34177 > view matrix models #30,1,0,0,295.54,0,1,0,289.31,0,0,1,436.41
    34178 
    34179 > view matrix models #30,1,0,0,332.12,0,1,0,305.75,0,0,1,378.14
    34180 
    34181 > select subtract #30
    34182 
    34183 Nothing selected 
    34184 
    34185 > hide #!30 models
    34186 
    34187 > open "/Users/becca/Desktop/Postdoc/Structure files/COPI
    34188 > structures/5mc7_human_zeta1COPI.cif"
    34189 
    34190 5mc7_human_zeta1COPI.cif title: 
    34191 Crystal structure of Truncated Human Coatomer Protein Complex, subunit Z1
    34192 (CopZ1) [more info...] 
    34193  
    34194 Chain information for 5mc7_human_zeta1COPI.cif #31 
    34195 --- 
    34196 Chain | Description | UniProt 
    34197 A B | Coatomer subunit zeta-1 | COPZ1_HUMAN 7-150 
    34198  
    34199 5mc7_human_zeta1COPI.cif mmCIF Assemblies 
    34200 --- 
    34201 1| author_defined_assembly 
    34202 2| author_defined_assembly 
    34203  
    34204 
    34205 > select add #31
    34206 
    34207 2340 atoms, 2256 bonds, 394 residues, 1 model selected 
    34208 
    34209 > view matrix models #31,1,0,0,330.02,0,1,0,82.452,0,0,1,370.35
    34210 
    34211 > view matrix models #31,1,0,0,244.56,0,1,0,227.11,0,0,1,313.43
    34212 
    34213 > view matrix models #31,1,0,0,289.31,0,1,0,324.83,0,0,1,331.93
    34214 
    34215 > select subtract #31
    34216 
    34217 Nothing selected 
    34218 
    34219 > hide #31 models
    34220 
    34221 > open "/Users/becca/Desktop/Postdoc/Structure files/COPI
    34222 > structures/5mu7_Thermophila_beta_deltaCOPI.cif"
    34223 
    34224 5mu7_Thermophila_beta_deltaCOPI.cif title: 
    34225 Crystal Structure of the beta/delta-COPI Core Complex [more info...] 
    34226  
    34227 Chain information for 5mu7_Thermophila_beta_deltaCOPI.cif #32 
    34228 --- 
    34229 Chain | Description | UniProt 
    34230 A | Coatomer subunit beta | G0S6G7_CHATD 19-391 
    34231 B | Coatomer subunit delta-like protein | G0S6I4_CHATD 1-175 
    34232  
    34233 
    34234 > select add #32
    34235 
    34236 4213 atoms, 4232 bonds, 565 residues, 1 model selected 
    34237 
    34238 > view matrix models #32,1,0,0,355.8,0,1,0,175.3,0,0,1,23.729
    34239 
    34240 > view matrix models #32,1,0,0,206.13,0,1,0,267.92,0,0,1,311.94
    34241 
    34242 > view matrix models #32,1,0,0,310.15,0,1,0,268.59,0,0,1,354.79
    34243 
    34244 > select subtract #32
    34245 
    34246 Nothing selected 
    34247 
    34248 > hide #32 models
    34249 
    34250 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    34251 > dataset/Chimera sessions/20240212_leaf_fitting_v7.cxs"
    34252 
    34253 > show #!26 models
    34254 
    34255 > show #!26.1 models
    34256 
    34257 > show #!26.2 models
    34258 
    34259 > show #26.3 models
    34260 
    34261 > hide #!26 models
    34262 
    34263 > show #!27 models
    34264 
    34265 > split #27 chains
    34266 
    34267 Split 3mkq_yeast_alpha_betaprimeCOPI.cif (#27) into 6 models 
    34268 Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif A #27.1 
    34269 --- 
    34270 Chain | Description 
    34271 A | No description available 
    34272  
    34273 Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif B #27.2 
    34274 --- 
    34275 Chain | Description 
    34276 B | No description available 
    34277  
    34278 Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif C #27.3 
    34279 --- 
    34280 Chain | Description 
    34281 C | No description available 
    34282  
    34283 Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif D #27.4 
    34284 --- 
    34285 Chain | Description 
    34286 D | No description available 
    34287  
    34288 Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif E #27.5 
    34289 --- 
    34290 Chain | Description 
    34291 E | No description available 
    34292  
    34293 Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif F #27.6 
    34294 --- 
    34295 Chain | Description 
    34296 F | No description available 
    34297  
    34298 
    34299 > close #27.5
    34300 
    34301 > close #27.6
    34302 
    34303 > close #27.3
    34304 
    34305 > close #27.4
    34306 
    34307 > hide #27.2 models
    34308 
    34309 > hide #27.1 models
    34310 
    34311 > show #27.1 models
    34312 
    34313 > show #27.2 models
    34314 
    34315 > select #27.1/A
    34316 
    34317 6538 atoms, 6591 bonds, 911 residues, 1 model selected 
    34318 
    34319 > color sel blue
    34320 
    34321 > hide #27.1 models
    34322 
    34323 > select subtract #27.1
    34324 
    34325 Nothing selected 
    34326 
    34327 > hide #27.2 models
    34328 
    34329 > show #27.2 models
    34330 
    34331 > select add #27.2
    34332 
    34333 1407 atoms, 1415 bonds, 194 residues, 1 model selected 
    34334 
    34335 > color sel cyan
    34336 
    34337 > show #27.1 models
    34338 
    34339 > select add #27.1
    34340 
    34341 7945 atoms, 8006 bonds, 1105 residues, 2 models selected 
    34342 
    34343 > select add #27
    34344 
    34345 7945 atoms, 8006 bonds, 1105 residues, 3 models selected 
    34346 
    34347 > select subtract #27
    34348 
    34349 Nothing selected 
    34350 
    34351 > select add #27
    34352 
    34353 7945 atoms, 8006 bonds, 1105 residues, 3 models selected 
    34354 
    34355 > show #3 models
    34356 
    34357 > show #7 models
    34358 
    34359 > undo
    34360 
    34361 [Repeated 9 time(s)]
    34362 
    34363 > hide #!27 models
    34364 
    34365 > show #!27 models
    34366 
    34367 > hide #!27 models
    34368 
    34369 > close #27
    34370 
    34371 > open "/Users/becca/Desktop/Postdoc/Structure files/COPI
    34372 > structures/3mkq_yeast_alpha_betaprimeCOPI.cif"
    34373 
    34374 3mkq_yeast_alpha_betaprimeCOPI.cif title: 
    34375 Crystal structure of yeast alpha/betaprime-COP subcomplex of the COPI
    34376 vesicular coat [more info...] 
    34377  
    34378 Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif #27 
    34379 --- 
    34380 Chain | Description | UniProt 
    34381 A C E | Coatomer beta'-subunit | A6ZU46_YEAS7 1-814 
    34382 B D F | Coatomer subunit alpha | COPA_YEAST 642-818 
    34383  
    34384 3mkq_yeast_alpha_betaprimeCOPI.cif mmCIF Assemblies 
    34385 --- 
    34386 1| author_defined_assembly 
    34387 2| software_defined_assembly 
    34388 3| software_defined_assembly 
    34389 4| software_defined_assembly 
    34390  
    34391 
    34392 > split #27 chains
    34393 
    34394 Split 3mkq_yeast_alpha_betaprimeCOPI.cif (#27) into 6 models 
    34395 Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif A #27.1 
    34396 --- 
    34397 Chain | Description 
    34398 A | No description available 
    34399  
    34400 Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif B #27.2 
    34401 --- 
    34402 Chain | Description 
    34403 B | No description available 
    34404  
    34405 Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif C #27.3 
    34406 --- 
    34407 Chain | Description 
    34408 C | No description available 
    34409  
    34410 Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif D #27.4 
    34411 --- 
    34412 Chain | Description 
    34413 D | No description available 
    34414  
    34415 Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif E #27.5 
    34416 --- 
    34417 Chain | Description 
    34418 E | No description available 
    34419  
    34420 Chain information for 3mkq_yeast_alpha_betaprimeCOPI.cif F #27.6 
    34421 --- 
    34422 Chain | Description 
    34423 F | No description available 
    34424  
    34425 
    34426 > select add #27
    34427 
    34428 23730 atoms, 23992 bonds, 2 pseudobonds, 3231 residues, 9 models selected 
    34429 
    34430 > view matrix models #27,1,0,0,-33.471,0,1,0,18.268,0,0,1,-43.011
    34431 
    34432 > view matrix models #27,1,0,0,-66.467,0,1,0,47.118,0,0,1,-97.087
    34433 
    34434 > hide sel atoms
    34435 
    34436 > show sel cartoons
    34437 
    34438 > view matrix models #27,1,0,0,-110.34,0,1,0,105.95,0,0,1,6.2245
    34439 
    34440 > view matrix models #27,1,0,0,-112.27,0,1,0,152.59,0,0,1,154.38
    34441 
    34442 > view matrix models #27,1,0,0,-43.946,0,1,0,169.44,0,0,1,304.3
    34443 
    34444 > view matrix models #27,1,0,0,5.3436,0,1,0,169.99,0,0,1,376.48
    34445 
    34446 > view matrix models #27,1,0,0,199.46,0,1,0,49.048,0,0,1,271.6
    34447 
    34448 > view matrix models #27,1,0,0,220.77,0,1,0,261.81,0,0,1,312.16
    34449 
    34450 > view matrix models #27,1,0,0,264.54,0,1,0,181.16,0,0,1,203.66
    34451 
    34452 > view matrix models #27,1,0,0,359.57,0,1,0,289.43,0,0,1,185.26
    34453 
    34454 > view matrix models #27,1,0,0,351.51,0,1,0,278.44,0,0,1,154.94
    34455 
    34456 > view matrix models #27,1,0,0,348.56,0,1,0,271.19,0,0,1,154.23
    34457 
    34458 > view matrix models #27,1,0,0,310.53,0,1,0,384.31,0,0,1,171.03
    34459 
    34460 > view matrix models #27,1,0,0,352.37,0,1,0,269.74,0,0,1,153.79
    34461 
    34462 > hide #27.1 models
    34463 
    34464 > show #27.1 models
    34465 
    34466 > hide #!1 models
    34467 
    34468 > select subtract #27
    34469 
    34470 Nothing selected 
    34471 
    34472 > hide #27.2 models
    34473 
    34474 > show #27.2 models
    34475 
    34476 > hide #27.2 models
    34477 
    34478 > show #27.2 models
    34479 
    34480 > show #3 models
    34481 
    34482 > show #7 models
    34483 
    34484 > close #27.3
    34485 
    34486 > close #27.4
    34487 
    34488 > close #27.5
    34489 
    34490 > close #27.6
    34491 
    34492 > select add #27.1
    34493 
    34494 6538 atoms, 6591 bonds, 911 residues, 1 model selected 
    34495 
    34496 > color sel blue
    34497 
    34498 > select subtract #27.1
    34499 
    34500 Nothing selected 
    34501 
    34502 > select add #27.2
    34503 
    34504 1407 atoms, 1415 bonds, 194 residues, 1 model selected 
    34505 
    34506 > color sel cyan\
    34507 
    34508 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
    34509 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
    34510 'fromcartoons', 'fromribbons', or 'random' or a keyword 
    34511 
    34512 > color sel cyan
    34513 
    34514 > select add #27.1
    34515 
    34516 7945 atoms, 8006 bonds, 1105 residues, 2 models selected 
    34517 
    34518 > select add #27
    34519 
    34520 7945 atoms, 8006 bonds, 1105 residues, 3 models selected 
    34521 
    34522 > select subtract #27
    34523 
    34524 Nothing selected 
    34525 
    34526 > select add #27
    34527 
    34528 7945 atoms, 8006 bonds, 1105 residues, 3 models selected 
    34529 
    34530 > view matrix models #27,1,0,0,224.88,0,1,0,278.4,0,0,1,185.4
    34531 
    34532 > ui mousemode right "rotate selected models"
    34533 
    34534 > view matrix models
    34535 > #27,-0.8019,-0.39029,-0.45235,357.11,0.26435,-0.91078,0.31718,431.22,-0.53579,0.13477,0.83353,205.04
    34536 
    34537 > view matrix models
    34538 > #27,-0.3088,-0.50226,0.8077,151.67,0.82975,-0.55736,-0.029367,446.47,0.46493,0.66112,0.58886,180.55
    34539 
    34540 > view matrix models
    34541 > #27,-0.39879,-0.41722,0.81663,141.04,0.67815,-0.73363,-0.043649,469.43,0.61732,0.53639,0.5755,196.08
    34542 
    34543 > ui mousemode right "translate selected models"
    34544 
    34545 > view matrix models
    34546 > #27,-0.39879,-0.41722,0.81663,160.04,0.67815,-0.73363,-0.043649,420.23,0.61732,0.53639,0.5755,168.81
    34547 
    34548 > view matrix models
    34549 > #27,-0.39879,-0.41722,0.81663,167.07,0.67815,-0.73363,-0.043649,415.41,0.61732,0.53639,0.5755,172.38
    34550 
    34551 > ui mousemode right "rotate selected models"
    34552 
    34553 > view matrix models
    34554 > #27,0.087653,0.44658,0.89044,55.324,0.95808,-0.28254,0.047392,348.03,0.27275,0.84896,-0.45263,313.8
    34555 
    34556 > view matrix models
    34557 > #27,-0.00017276,0.96234,0.27185,106.34,0.92638,0.10253,-0.36236,376.65,-0.37658,0.25178,-0.89151,459.02
    34558 
    34559 > view matrix models
    34560 > #27,-0.56985,0.14592,0.80869,109.58,0.79912,-0.13098,0.58673,242.14,0.19153,0.98059,-0.04197,229.92
    34561 
    34562 > ui mousemode right "translate selected models"
    34563 
    34564 > view matrix models
    34565 > #27,-0.56985,0.14592,0.80869,109.79,0.79912,-0.13098,0.58673,242.97,0.19153,0.98059,-0.04197,231.59
    34566 
    34567 > view matrix models
    34568 > #27,-0.56985,0.14592,0.80869,90.528,0.79912,-0.13098,0.58673,243.4,0.19153,0.98059,-0.04197,255.5
    34569 
    34570 > ui mousemode right "rotate selected models"
    34571 
    34572 > view matrix models
    34573 > #27,-0.39522,0.80772,-0.43749,229.61,0.20082,-0.38877,-0.89918,529.2,-0.89637,-0.44323,-0.0085523,416.21
    34574 
    34575 > view matrix models
    34576 > #27,0.32357,0.9258,0.19545,103.01,0.85876,-0.2006,-0.47148,430.34,-0.39729,0.3204,-0.85995,473.27
    34577 
    34578 > select subtract #27
    34579 
    34580 Nothing selected 
    34581 
    34582 > select add #27.1
    34583 
    34584 6538 atoms, 6591 bonds, 911 residues, 1 model selected 
    34585 
    34586 > color sel cyan
    34587 
    34588 > select subtract #27.1
    34589 
    34590 Nothing selected 
    34591 
    34592 > select add #27.2
    34593 
    34594 1407 atoms, 1415 bonds, 194 residues, 1 model selected 
    34595 
    34596 > color sel blue
    34597 
    34598 > select add #27
    34599 
    34600 7945 atoms, 8006 bonds, 1105 residues, 3 models selected 
    34601 
    34602 > select subtract #27
    34603 
    34604 Nothing selected 
    34605 
    34606 > select add #27
    34607 
    34608 7945 atoms, 8006 bonds, 1105 residues, 3 models selected 
    34609 
    34610 > view matrix models
    34611 > #27,0.67294,-0.17512,-0.71866,377.06,-0.41892,0.71051,-0.5654,354.34,0.60964,0.68154,0.40477,212.27
    34612 
    34613 > ui mousemode right "translate selected models"
    34614 
    34615 > view matrix models
    34616 > #27,0.67294,-0.17512,-0.71866,420.58,-0.41892,0.71051,-0.5654,312.06,0.60964,0.68154,0.40477,205.11
    34617 
    34618 > view matrix models
    34619 > #27,0.67294,-0.17512,-0.71866,426.42,-0.41892,0.71051,-0.5654,314.25,0.60964,0.68154,0.40477,204.16
    34620 
    34621 > ui mousemode right "rotate selected models"
    34622 
    34623 > view matrix models
    34624 > #27,0.27365,-0.79674,-0.53882,467.55,-0.36388,0.43281,-0.82478,388.29,0.89034,0.42177,-0.17148,328.22
    34625 
    34626 > view matrix models
    34627 > #27,0.0094825,-0.88128,-0.47249,467.78,-0.48973,0.40787,-0.77059,382.87,0.87182,0.2387,-0.42772,392.01
    34628 
    34629 > view matrix models
    34630 > #27,0.04732,-0.84816,-0.52763,473.19,-0.51437,0.43211,-0.74075,375.35,0.85626,0.30645,-0.41582,382.68
    34631 
    34632 > ui mousemode right zoom
    34633 
    34634 > select subtract #27
    34635 
    34636 Nothing selected 
    34637 
    34638 > select add #27
    34639 
    34640 7945 atoms, 8006 bonds, 1105 residues, 3 models selected 
    34641 
    34642 > select subtract #27
    34643 
    34644 Nothing selected 
    34645 
    34646 > select add #27
    34647 
    34648 7945 atoms, 8006 bonds, 1105 residues, 3 models selected 
    34649 
    34650 > select subtract #27
    34651 
    34652 Nothing selected 
    34653 
    34654 > ui mousemode right "rotate selected models"
    34655 
    34656 > select add #27
    34657 
    34658 7945 atoms, 8006 bonds, 1105 residues, 3 models selected 
    34659 
    34660 > view matrix models
    34661 > #27,0.46289,-0.51191,-0.72366,466.08,-0.47119,0.5494,-0.69003,353.49,0.75081,0.66039,0.013104,271.83
    34662 
    34663 > view matrix models
    34664 > #27,0.53247,-0.48857,-0.69121,457.42,-0.40665,0.56853,-0.71513,355.11,0.74236,0.66187,0.10405,256.29
    34665 
    34666 > ui mousemode right "translate selected models"
    34667 
    34668 > view matrix models
    34669 > #27,0.53247,-0.48857,-0.69121,452.1,-0.40665,0.56853,-0.71513,360.23,0.74236,0.66187,0.10405,262.33
    34670 
    34671 > view matrix models
    34672 > #27,0.53247,-0.48857,-0.69121,451.55,-0.40665,0.56853,-0.71513,361.48,0.74236,0.66187,0.10405,258.38
    34673 
    34674 > select subtract #27
    34675 
    34676 Nothing selected 
    34677 
    34678 > select add #27
    34679 
    34680 7945 atoms, 8006 bonds, 1105 residues, 3 models selected 
    34681 
    34682 > show #!1 models
    34683 
    34684 > hide #7 models
    34685 
    34686 > show #7 models
    34687 
    34688 > hide #7 models
    34689 
    34690 > show #7 models
    34691 
    34692 > hide #7 models
    34693 
    34694 > show #7 models
    34695 
    34696 > hide #7 models
    34697 
    34698 > show #7 models
    34699 
    34700 > hide #27.1 models
    34701 
    34702 > show #27.1 models
    34703 
    34704 > hide #27.1 models
    34705 
    34706 > show #27.1 models
    34707 
    34708 > hide #27.1 models
    34709 
    34710 > show #27.1 models
    34711 
    34712 > view matrix models
    34713 > #27,0.53247,-0.48857,-0.69121,450.51,-0.40665,0.56853,-0.71513,359.29,0.74236,0.66187,0.10405,264.47
    34714 
    34715 > ui mousemode right "rotate selected models"
    34716 
    34717 > view matrix models
    34718 > #27,0.29764,-0.72075,-0.62605,466.91,-0.60733,0.36301,-0.70666,382.11,0.73659,0.59055,-0.32968,346.04
    34719 
    34720 > select subtract #27.2
    34721 
    34722 6538 atoms, 6591 bonds, 911 residues, 2 models selected 
    34723 
    34724 > select add #27.2
    34725 
    34726 7945 atoms, 8006 bonds, 1105 residues, 3 models selected 
    34727 
    34728 > select subtract #27.2
    34729 
    34730 6538 atoms, 6591 bonds, 911 residues, 2 models selected 
    34731 
    34732 > select add #27.2
    34733 
    34734 7945 atoms, 8006 bonds, 1105 residues, 3 models selected 
    34735 
    34736 > fitmap #27.1 inMap #1
    34737 
    34738 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    34739 postprocess_20231221.mrc (#1) using 6538 atoms 
    34740 average map value = 0.003372, steps = 64 
    34741 shifted from previous position = 3.67 
    34742 rotated from previous position = 5.26 degrees 
    34743 atoms outside contour = 3801, contour level = 0.0036964 
    34744  
    34745 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    34746 postprocess_20231221.mrc (#1) coordinates: 
    34747 Matrix rotation and translation 
    34748 0.99563534 -0.01884854 0.09140567 -126.42192730 
    34749 0.01701031 0.99963793 0.02084829 -116.29768557 
    34750 -0.09176553 -0.01920246 0.99559548 -103.45651657 
    34751 Axis -0.20980309 0.95952970 0.18784414 
    34752 Axis point -989.11740259 0.00000000 1575.71651882 
    34753 Rotation angle (degrees) 5.47712995 
    34754 Shift along axis -104.50107148 
    34755  
    34756 
    34757 > fitmap #27.1 inMap #1
    34758 
    34759 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    34760 postprocess_20231221.mrc (#1) using 6538 atoms 
    34761 average map value = 0.003372, steps = 24 
    34762 shifted from previous position = 0.00833 
    34763 rotated from previous position = 0.0572 degrees 
    34764 atoms outside contour = 3796, contour level = 0.0036964 
    34765  
    34766 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    34767 postprocess_20231221.mrc (#1) coordinates: 
    34768 Matrix rotation and translation 
    34769 0.99554749 -0.01869817 0.09238819 -126.60260018 
    34770 0.01684025 0.99964080 0.02084884 -116.29480603 
    34771 -0.09274484 -0.01920017 0.99550477 -103.42435891 
    34772 Axis -0.20780890 0.96063031 0.18440409 
    34773 Axis point -982.92709826 0.00000000 1557.96731563 
    34774 Rotation angle (degrees) 5.52961189 
    34775 Shift along axis -104.47904405 
    34776  
    34777 
    34778 > fitmap #27.2 inMap #1
    34779 
    34780 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    34781 postprocess_20231221.mrc (#1) using 1407 atoms 
    34782 average map value = 0.002636, steps = 76 
    34783 shifted from previous position = 8.09 
    34784 rotated from previous position = 17.7 degrees 
    34785 atoms outside contour = 1160, contour level = 0.0036964 
    34786  
    34787 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    34788 postprocess_20231221.mrc (#1) coordinates: 
    34789 Matrix rotation and translation 
    34790 0.99552776 0.00840910 -0.09409449 -103.09535974 
    34791 0.01959858 0.95597622 0.29278894 -159.42111449 
    34792 0.09241419 -0.29332364 0.95153605 -62.53786473 
    34793 Axis -0.95275953 -0.30318054 0.01818914 
    34794 Axis point 0.00000000 -280.34050268 351.75735188 
    34795 Rotation angle (degrees) 17.91386203 
    34796 Shift along axis 145.42095540 
    34797  
    34798 
    34799 > hide #7 models
    34800 
    34801 > select subtract #27.1
    34802 
    34803 1407 atoms, 1415 bonds, 194 residues, 2 models selected 
    34804 
    34805 > hide #27.1 models
    34806 
    34807 > hide #3 models
    34808 
    34809 > show #3 models
    34810 
    34811 > hide #3 models
    34812 
    34813 > show #3 models
    34814 
    34815 > hide #3 models
    34816 
    34817 > select subtract #27.2
    34818 
    34819 1 model selected 
    34820 
    34821 > hide #27.2 models
    34822 
    34823 > hide #!27 models
    34824 
    34825 > select add #27
    34826 
    34827 7945 atoms, 8006 bonds, 1105 residues, 3 models selected 
    34828 
    34829 > select subtract #27
    34830 
    34831 Nothing selected 
    34832 
    34833 > show #28 models
    34834 
    34835 > select add #28
    34836 
    34837 4908 atoms, 4974 bonds, 645 residues, 1 model selected 
    34838 
    34839 > split #28 chains
    34840 
    34841 Split 3mkr_yeast_alpha_epsilonCOPI.cif (#28) into 2 models 
    34842 Chain information for 3mkr_yeast_alpha_epsilonCOPI.cif A #28.1 
    34843 --- 
    34844 Chain | Description 
    34845 A | No description available 
    34846  
    34847 Chain information for 3mkr_yeast_alpha_epsilonCOPI.cif B #28.2 
    34848 --- 
    34849 Chain | Description 
    34850 B | No description available 
    34851  
    34852 
    34853 > select add #28.1
    34854 
    34855 2342 atoms, 2367 bonds, 309 residues, 1 model selected 
    34856 
    34857 > select subtract #28.1
    34858 
    34859 Nothing selected 
    34860 
    34861 > select add #28.2
    34862 
    34863 2566 atoms, 2607 bonds, 336 residues, 1 model selected 
    34864 
    34865 > select subtract #28.2
    34866 
    34867 Nothing selected 
    34868 
    34869 > hide #!1 models
    34870 
    34871 > show #3 models
    34872 
    34873 > select add #28.2
    34874 
    34875 2566 atoms, 2607 bonds, 336 residues, 1 model selected 
    34876 
    34877 > select subtract #28.2
    34878 
    34879 Nothing selected 
    34880 
    34881 > select add #28.2
    34882 
    34883 2566 atoms, 2607 bonds, 336 residues, 1 model selected 
    34884 
    34885 > color sel blue
    34886 
    34887 > select subtract #28.2
    34888 
    34889 Nothing selected 
    34890 
    34891 > select add #28.1
    34892 
    34893 2342 atoms, 2367 bonds, 309 residues, 1 model selected 
    34894 
    34895 > color sel orange
    34896 
    34897 > select subtract #28.1
    34898 
    34899 Nothing selected 
    34900 
    34901 > select add #28
    34902 
    34903 4908 atoms, 4974 bonds, 645 residues, 3 models selected 
    34904 
    34905 > view matrix models
    34906 > #28,0.27094,-0.90598,-0.32525,650.32,-0.93818,-0.32415,0.12139,703.67,-0.21541,0.27225,-0.93781,646.09
    34907 
    34908 > view matrix models
    34909 > #28,-0.72497,0.43806,-0.53153,610.37,-0.03694,0.74585,0.66509,-131.96,0.68779,0.5018,-0.52454,131.15
    34910 
    34911 > ui mousemode right "translate selected models"
    34912 
    34913 > view matrix models
    34914 > #28,-0.72497,0.43806,-0.53153,578.74,-0.03694,0.74585,0.66509,-102.29,0.68779,0.5018,-0.52454,169.61
    34915 
    34916 > view matrix models
    34917 > #28,-0.72497,0.43806,-0.53153,572.54,-0.03694,0.74585,0.66509,-78.73,0.68779,0.5018,-0.52454,174.16
    34918 
    34919 > ui mousemode right "rotate selected models"
    34920 
    34921 > view matrix models
    34922 > #28,-0.61624,-0.35726,-0.70186,854.63,-0.52069,0.85344,0.022757,266.96,0.59087,0.37948,-0.71195,310.55
    34923 
    34924 > view matrix models
    34925 > #28,-0.10838,-0.97616,-0.18805,713.55,-0.8857,0.18071,-0.42764,761.8,0.45142,0.12021,-0.88418,500.47
    34926 
    34927 > view matrix models
    34928 > #28,0.1959,-0.68831,-0.69846,693.59,-0.74299,0.36067,-0.56381,702.29,0.63999,0.6294,-0.44075,119.75
    34929 
    34930 > show #!1 models
    34931 
    34932 > view matrix models
    34933 > #28,0.92946,0.13561,-0.3431,60.309,-0.11667,-0.77422,-0.62207,886.84,-0.34999,0.61822,-0.70378,538.85
    34934 
    34935 > ui mousemode right "translate selected models"
    34936 
    34937 > view matrix models
    34938 > #28,0.92946,0.13561,-0.3431,41.654,-0.11667,-0.77422,-0.62207,861.16,-0.34999,0.61822,-0.70378,548.17
    34939 
    34940 > view matrix models
    34941 > #28,0.92946,0.13561,-0.3431,43.224,-0.11667,-0.77422,-0.62207,848.66,-0.34999,0.61822,-0.70378,541.05
    34942 
    34943 > ui mousemode right "rotate selected models"
    34944 
    34945 > view matrix models
    34946 > #28,0.21767,0.93544,-0.27852,-4.1958,0.67225,-0.35057,-0.65206,458.24,-0.7076,-0.045302,-0.70516,877.28
    34947 
    34948 > view matrix models
    34949 > #28,-0.20838,0.7607,-0.61474,309.65,0.79983,-0.22921,-0.55474,342.94,-0.5629,-0.60729,-0.56067,964.53
    34950 
    34951 > hide #3 models
    34952 
    34953 > show #3 models
    34954 
    34955 > view matrix models
    34956 > #28,-0.37026,0.81787,-0.44045,284.72,0.91574,0.40097,-0.025257,-83.166,0.15595,-0.41269,-0.89742,778.5
    34957 
    34958 > hide #!28 models
    34959 
    34960 > hide #3 models
    34961 
    34962 > show #!28 models
    34963 
    34964 > view matrix models
    34965 > #28,0.54646,0.46329,-0.69767,183.82,0.3112,-0.88573,-0.34443,645.8,-0.77752,-0.028895,-0.62819,870.21
    34966 
    34967 > hide #!28 models
    34968 
    34969 > show #3 models
    34970 
    34971 > hide #3 models
    34972 
    34973 > show #!28 models
    34974 
    34975 > show #3 models
    34976 
    34977 > view matrix models
    34978 > #28,0.57422,0.45144,-0.68299,173.42,0.22738,-0.88935,-0.39667,692.76,-0.78649,0.072481,-0.61334,835.01
    34979 
    34980 > ui mousemode right "translate selected models"
    34981 
    34982 > view matrix models
    34983 > #28,0.57422,0.45144,-0.68299,173.55,0.22738,-0.88935,-0.39667,708.24,-0.78649,0.072481,-0.61334,843.23
    34984 
    34985 > view matrix models
    34986 > #28,0.57422,0.45144,-0.68299,175.76,0.22738,-0.88935,-0.39667,708.31,-0.78649,0.072481,-0.61334,839.12
    34987 
    34988 > ui mousemode right "rotate selected models"
    34989 
    34990 > view matrix models
    34991 > #28,0.56852,0.45387,-0.68614,177.95,0.22624,-0.88814,-0.40003,709.44,-0.79095,0.072191,-0.60761,838.73
    34992 
    34993 > view matrix models
    34994 > #28,0.56184,0.42352,-0.71061,198.48,0.20667,-0.90363,-0.37516,712.5,-0.80101,0.063921,-0.59523,840.54
    34995 
    34996 > ui mousemode right "translate selected models"
    34997 
    34998 > view matrix models
    34999 > #28,0.56184,0.42352,-0.71061,195.64,0.20667,-0.90363,-0.37516,706.04,-0.80101,0.063921,-0.59523,844.64
    35000 
    35001 > ui mousemode right "rotate selected models"
    35002 
    35003 > view matrix models
    35004 > #28,0.56647,0.33017,-0.75505,239.72,-0.052948,-0.89975,-0.43318,810.82,-0.82238,0.28536,-0.4922,744.22
    35005 
    35006 > ui mousemode right "translate selected models"
    35007 
    35008 > view matrix models
    35009 > #28,0.56647,0.33017,-0.75505,238.7,-0.052948,-0.89975,-0.43318,806.34,-0.82238,0.28536,-0.4922,747.27
    35010 
    35011 > ui mousemode right "rotate selected models"
    35012 
    35013 > view matrix models
    35014 > #28,0.56476,0.24152,-0.78912,279.86,-0.40724,-0.75012,-0.52104,904.9,-0.71778,0.61562,-0.32528,547.7
    35015 
    35016 > ui mousemode right "translate selected models"
    35017 
    35018 > view matrix models
    35019 > #28,0.56476,0.24152,-0.78912,279.03,-0.40724,-0.75012,-0.52104,904.01,-0.71778,0.61562,-0.32528,548.96
    35020 
    35021 > ui mousemode right "rotate selected models"
    35022 
    35023 > view matrix models
    35024 > #28,0.46944,0.26357,-0.84271,321.72,-0.35954,-0.81464,-0.45508,886.75,-0.80645,0.51661,-0.28766,597.77
    35025 
    35026 > ui mousemode right "translate selected models"
    35027 
    35028 > view matrix models
    35029 > #28,0.46944,0.26357,-0.84271,323.88,-0.35954,-0.81464,-0.45508,888.31,-0.80645,0.51661,-0.28766,598.15
    35030 
    35031 > view matrix models
    35032 > #28,0.46944,0.26357,-0.84271,322.26,-0.35954,-0.81464,-0.45508,888.45,-0.80645,0.51661,-0.28766,598.93
    35033 
    35034 > ui mousemode right "rotate selected models"
    35035 
    35036 > view matrix models
    35037 > #28,0.58942,0.23895,-0.77168,266.27,-0.34892,-0.78624,-0.50997,894.47,-0.72859,0.56984,-0.38005,587.44
    35038 
    35039 > ui mousemode right "translate selected models"
    35040 
    35041 > view matrix models
    35042 > #28,0.58942,0.23895,-0.77168,266.89,-0.34892,-0.78624,-0.50997,895.27,-0.72859,0.56984,-0.38005,586.64
    35043 
    35044 > hide #3 models
    35045 
    35046 > show #3 models
    35047 
    35048 > hide #3 models
    35049 
    35050 > show #3 models
    35051 
    35052 > hide #3 models
    35053 
    35054 > hide #!1 models
    35055 
    35056 > show #!1 models
    35057 
    35058 > select subtract #28
    35059 
    35060 Nothing selected 
    35061 
    35062 > ui mousemode right zoom
    35063 
    35064 > hide #!28 models
    35065 
    35066 > show #29 models
    35067 
    35068 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    35069 > dataset/Chimera sessions/20240212_leaf_fitting_v8.cxs"
    35070 
    35071 > select add #29
    35072 
    35073 2270 atoms, 2156 bonds, 426 residues, 1 model selected 
    35074 
    35075 > color sel lime green
    35076 
    35077 > select subtract #29
    35078 
    35079 Nothing selected 
    35080 
    35081 > hide #29 models
    35082 
    35083 > show #29 models
    35084 
    35085 > select add #29
    35086 
    35087 2270 atoms, 2156 bonds, 426 residues, 1 model selected 
    35088 
    35089 > show #!9 models
    35090 
    35091 > hide #!1 models
    35092 
    35093 > ui mousemode right "translate selected models"
    35094 
    35095 > view matrix models #29,1,0,0,375.34,0,1,0,388.97,0,0,1,396.79
    35096 
    35097 > view matrix models #29,1,0,0,428.18,0,1,0,380.13,0,0,1,342.71
    35098 
    35099 > ui mousemode right "rotate selected models"
    35100 
    35101 > view matrix models
    35102 > #29,0.83833,-0.49981,0.21772,422.81,0.32688,0.14123,-0.93445,366.32,0.4363,0.85455,0.28178,350.68
    35103 
    35104 > ui mousemode right "translate selected models"
    35105 
    35106 > view matrix models
    35107 > #29,0.83833,-0.49981,0.21772,371.69,0.32688,0.14123,-0.93445,391.6,0.4363,0.85455,0.28178,399.82
    35108 
    35109 > ui mousemode right zoom
    35110 
    35111 > hide #29 models
    35112 
    35113 > show #29 models
    35114 
    35115 > hide #29 models
    35116 
    35117 > show #29 models
    35118 
    35119 > hide #29 models
    35120 
    35121 > show #29 models
    35122 
    35123 > ui mousemode right "rotate selected models"
    35124 
    35125 > view matrix models
    35126 > #29,0.8548,-0.37766,0.35593,374.92,0.47797,0.30579,-0.82343,397.49,0.20214,0.87399,0.4419,397.51
    35127 
    35128 > ui mousemode right "translate selected models"
    35129 
    35130 > view matrix models
    35131 > #29,0.8548,-0.37766,0.35593,375,0.47797,0.30579,-0.82343,394.09,0.20214,0.87399,0.4419,399.97
    35132 
    35133 > view matrix models
    35134 > #29,0.8548,-0.37766,0.35593,371.98,0.47797,0.30579,-0.82343,396.12,0.20214,0.87399,0.4419,403.61
    35135 
    35136 > view matrix models
    35137 > #29,0.8548,-0.37766,0.35593,370.55,0.47797,0.30579,-0.82343,397.11,0.20214,0.87399,0.4419,403.75
    35138 
    35139 > view matrix models
    35140 > #29,0.8548,-0.37766,0.35593,370.1,0.47797,0.30579,-0.82343,396.07,0.20214,0.87399,0.4419,400.61
    35141 
    35142 > view matrix models
    35143 > #29,0.8548,-0.37766,0.35593,368.66,0.47797,0.30579,-0.82343,395.18,0.20214,0.87399,0.4419,399.13
    35144 
    35145 > ui mousemode right "rotate selected models"
    35146 
    35147 > view matrix models
    35148 > #29,0.79685,-0.40594,0.44748,368.4,0.54533,0.16442,-0.82194,395.08,0.26008,0.89899,0.35239,399.38
    35149 
    35150 > view matrix models
    35151 > #29,0.93787,0.087344,0.33582,374.61,0.28212,0.37149,-0.88453,391.34,-0.20201,0.92432,0.32377,390.45
    35152 
    35153 > ui mousemode right "translate selected models"
    35154 
    35155 > view matrix models
    35156 > #29,0.93787,0.087344,0.33582,374.66,0.28212,0.37149,-0.88453,390.76,-0.20201,0.92432,0.32377,389.31
    35157 
    35158 > view matrix models
    35159 > #29,0.93787,0.087344,0.33582,372.22,0.28212,0.37149,-0.88453,390.66,-0.20201,0.92432,0.32377,390.82
    35160 
    35161 > ui mousemode right "rotate selected models"
    35162 
    35163 > view matrix models
    35164 > #29,0.92879,0.017925,0.37018,371.78,0.33922,0.3612,-0.8686,391.85,-0.14928,0.93232,0.3294,391.98
    35165 
    35166 > ui mousemode right "translate selected models"
    35167 
    35168 > view matrix models
    35169 > #29,0.92879,0.017925,0.37018,372.65,0.33922,0.3612,-0.8686,391.75,-0.14928,0.93232,0.3294,391.71
    35170 
    35171 > view matrix models
    35172 > #29,0.92879,0.017925,0.37018,373.04,0.33922,0.3612,-0.8686,392.19,-0.14928,0.93232,0.3294,390.82
    35173 
    35174 > view matrix models
    35175 > #29,0.92879,0.017925,0.37018,372.95,0.33922,0.3612,-0.8686,392.11,-0.14928,0.93232,0.3294,390.88
    35176 
    35177 > ui mousemode right "rotate selected models"
    35178 
    35179 > view matrix models
    35180 > #29,0.93952,-0.036326,0.34055,372.25,0.32812,0.3804,-0.86466,392.14,-0.098138,0.92411,0.36932,392.27
    35181 
    35182 > ui mousemode right "translate selected models"
    35183 
    35184 > view matrix models
    35185 > #29,0.93952,-0.036326,0.34055,372.49,0.32812,0.3804,-0.86466,391.54,-0.098138,0.92411,0.36932,392.82
    35186 
    35187 > ui mousemode right "rotate selected models"
    35188 
    35189 > view matrix models
    35190 > #29,0.93561,-0.042104,0.35051,372.48,0.33743,0.39859,-0.8528,392.04,-0.1038,0.91616,0.38713,392.85
    35191 
    35192 > view matrix models
    35193 > #29,0.93508,-0.066989,0.34804,372.19,0.34797,0.36016,-0.86557,391.71,-0.067366,0.93048,0.36009,393.36
    35194 
    35195 > select subtract #29
    35196 
    35197 Nothing selected 
    35198 
    35199 > hide #29 models
    35200 
    35201 > show #!1 models
    35202 
    35203 > show #29 models
    35204 
    35205 > hide #29 models
    35206 
    35207 > show #29 models
    35208 
    35209 > select add #29
    35210 
    35211 2270 atoms, 2156 bonds, 426 residues, 1 model selected 
    35212 
    35213 > view matrix models
    35214 > #29,0.9287,-0.093321,0.3589,371.94,0.3671,0.36847,-0.85409,392.3,-0.052542,0.92494,0.37646,393.79
    35215 
    35216 > view matrix models
    35217 > #29,0.93478,0.008194,0.35514,373.02,0.33418,0.31874,-0.88698,390.77,-0.12047,0.94781,0.29522,391.71
    35218 
    35219 > select subtract #29
    35220 
    35221 Nothing selected 
    35222 
    35223 > hide #29 models
    35224 
    35225 > show #!30 models
    35226 
    35227 > select add #30
    35228 
    35229 2737 atoms, 2622 bonds, 1 pseudobond, 505 residues, 2 models selected 
    35230 
    35231 > color sel blue
    35232 
    35233 > hide #!9 models
    35234 
    35235 > show #3 models
    35236 
    35237 > hide #!1 models
    35238 
    35239 > view matrix models
    35240 > #30,0.79132,0.085843,0.60535,342.1,-0.0093616,0.99168,-0.12839,302.91,-0.61133,0.09593,0.78554,365.41
    35241 
    35242 > view matrix models
    35243 > #30,-0.24899,0.12054,-0.96098,295.64,0.86303,0.4779,-0.16366,319.44,0.43952,-0.8701,-0.22302,369.25
    35244 
    35245 > view matrix models
    35246 > #30,-0.27578,0.087921,-0.95719,295.96,0.90872,0.34843,-0.22981,320.5,0.31331,-0.9332,-0.17599,369.99
    35247 
    35248 > ui mousemode right "translate selected models"
    35249 
    35250 > view matrix models
    35251 > #30,-0.27578,0.087921,-0.95719,263.02,0.90872,0.34843,-0.22981,367.61,0.31331,-0.9332,-0.17599,317.21
    35252 
    35253 > view matrix models
    35254 > #30,-0.27578,0.087921,-0.95719,256.75,0.90872,0.34843,-0.22981,369.1,0.31331,-0.9332,-0.17599,313.93
    35255 
    35256 > ui mousemode right "rotate selected models"
    35257 
    35258 > view matrix models
    35259 > #30,0.75135,-0.36095,0.55244,308.4,-0.54131,0.14169,0.8288,380.85,-0.37743,-0.92176,-0.088924,308.45
    35260 
    35261 > ui mousemode right "translate selected models"
    35262 
    35263 > view matrix models
    35264 > #30,0.75135,-0.36095,0.55244,300.71,-0.54131,0.14169,0.8288,377.79,-0.37743,-0.92176,-0.088924,307.47
    35265 
    35266 > ui mousemode right "translate selected models"
    35267 
    35268 > view matrix models
    35269 > #30,0.75135,-0.36095,0.55244,301.05,-0.54131,0.14169,0.8288,377.4,-0.37743,-0.92176,-0.088924,306.34
    35270 
    35271 > ui mousemode right zoom
    35272 
    35273 > ui mousemode right "translate selected models"
    35274 
    35275 > view matrix models
    35276 > #30,0.75135,-0.36095,0.55244,306.04,-0.54131,0.14169,0.8288,377.36,-0.37743,-0.92176,-0.088924,307.64
    35277 
    35278 > ui mousemode right "rotate selected models"
    35279 
    35280 > view matrix models
    35281 > #30,0.73746,-0.38813,0.55273,306.33,-0.52055,0.1948,0.83131,376.79,-0.43033,-0.90078,-0.05838,307.43
    35282 
    35283 > ui mousemode right "translate selected models"
    35284 
    35285 > view matrix models
    35286 > #30,0.73746,-0.38813,0.55273,302.77,-0.52055,0.1948,0.83131,374.28,-0.43033,-0.90078,-0.05838,306.95
    35287 
    35288 > view matrix models
    35289 > #30,0.73746,-0.38813,0.55273,303.4,-0.52055,0.1948,0.83131,375.49,-0.43033,-0.90078,-0.05838,305.83
    35290 
    35291 > view matrix models
    35292 > #30,0.73746,-0.38813,0.55273,304.24,-0.52055,0.1948,0.83131,376.71,-0.43033,-0.90078,-0.05838,305.94
    35293 
    35294 > ui mousemode right "rotate selected models"
    35295 
    35296 > view matrix models
    35297 > #30,0.81542,-0.39068,0.42716,302.29,-0.40454,0.14323,0.90323,380.36,-0.41406,-0.90932,-0.04125,306.63
    35298 
    35299 > view matrix models
    35300 > #30,0.82816,-0.48879,0.27428,300.57,-0.36661,-0.10223,0.92474,385.14,-0.42396,-0.86639,-0.26386,300.86
    35301 
    35302 > ui mousemode right zoom
    35303 
    35304 > ui mousemode right "translate selected models"
    35305 
    35306 > view matrix models
    35307 > #30,0.82816,-0.48879,0.27428,298.77,-0.36661,-0.10223,0.92474,382.56,-0.42396,-0.86639,-0.26386,300.43
    35308 
    35309 > view matrix models
    35310 > #30,0.82816,-0.48879,0.27428,298.1,-0.36661,-0.10223,0.92474,384.39,-0.42396,-0.86639,-0.26386,299.48
    35311 
    35312 > view matrix models
    35313 > #30,0.82816,-0.48879,0.27428,298.04,-0.36661,-0.10223,0.92474,383.35,-0.42396,-0.86639,-0.26386,300.87
    35314 
    35315 > ui mousemode right "rotate selected models"
    35316 
    35317 > view matrix models
    35318 > #30,0.78042,-0.47085,0.4114,300.32,-0.45137,0.031056,0.8918,379.61,-0.43268,-0.88167,-0.18829,302.71
    35319 
    35320 > view matrix models
    35321 > #30,0.8048,-0.42303,0.41633,299.92,-0.45528,0.010045,0.89029,379.87,-0.3808,-0.90606,-0.18451,303.73
    35322 
    35323 > ui mousemode right "translate selected models"
    35324 
    35325 > view matrix models
    35326 > #30,0.8048,-0.42303,0.41633,300.4,-0.45528,0.010045,0.89029,380.98,-0.3808,-0.90606,-0.18451,304.23
    35327 
    35328 > view matrix models
    35329 > #30,0.8048,-0.42303,0.41633,300.6,-0.45528,0.010045,0.89029,380.37,-0.3808,-0.90606,-0.18451,303.94
    35330 
    35331 > ui mousemode right "rotate selected models"
    35332 
    35333 > view matrix models
    35334 > #30,0.83865,-0.45123,0.30505,298.92,-0.36787,-0.056235,0.92818,383.18,-0.40166,-0.89064,-0.21315,302.83
    35335 
    35336 > view matrix models
    35337 > #30,0.79527,-0.52538,0.30252,299.59,-0.39715,-0.074472,0.91473,382.87,-0.45805,-0.8476,-0.26788,300.33
    35338 
    35339 > ui mousemode right "translate selected models"
    35340 
    35341 > view matrix models
    35342 > #30,0.79527,-0.52538,0.30252,299.35,-0.39715,-0.074472,0.91473,382.32,-0.45805,-0.8476,-0.26788,299.81
    35343 
    35344 > ui mousemode right "rotate selected models"
    35345 
    35346 > view matrix models
    35347 > #30,0.72405,-0.51886,0.45446,301.89,-0.54275,-0.021995,0.83961,378.28,-0.42564,-0.85458,-0.29753,299.59
    35348 
    35349 > show #!1 models
    35350 
    35351 > hide #!1 models
    35352 
    35353 > hide #3 models
    35354 
    35355 > show #!1 models
    35356 
    35357 > fitmap #30 inMap #1
    35358 
    35359 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map postprocess_20231221.mrc
    35360 (#1) using 2737 atoms 
    35361 average map value = 0.003386, steps = 52 
    35362 shifted from previous position = 1.93 
    35363 rotated from previous position = 9.04 degrees 
    35364 atoms outside contour = 1731, contour level = 0.0036964 
    35365  
    35366 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    35367 postprocess_20231221.mrc (#1) coordinates: 
    35368 Matrix rotation and translation 
    35369 0.80232827 -0.50188592 0.32307875 187.68257184 
    35370 -0.41022520 -0.07048171 0.90925663 269.80500093 
    35371 -0.43357196 -0.86205734 -0.26243572 189.57183217 
    35372 Axis -0.91857179 0.39238555 0.04753362 
    35373 Axis point 0.00000000 254.75327857 -21.62954113 
    35374 Rotation angle (degrees) 105.38445736 
    35375 Shift along axis -57.52129884 
    35376  
    35377 
    35378 > hide #!1 models
    35379 
    35380 > show #3 models
    35381 
    35382 > hide #3 models
    35383 
    35384 > show #3 models
    35385 
    35386 > hide #3 models
    35387 
    35388 > show #3 models
    35389 
    35390 > fitmap #3 inMap #1
    35391 
    35392 Fit molecule CopA_F8WHL2.pdb (#3) to map postprocess_20231221.mrc (#1) using
    35393 9810 atoms 
    35394 average map value = 0.001845, steps = 48 
    35395 shifted from previous position = 0.0635 
    35396 rotated from previous position = 0.06 degrees 
    35397 atoms outside contour = 8390, contour level = 0.0036964 
    35398  
    35399 Position of CopA_F8WHL2.pdb (#3) relative to postprocess_20231221.mrc (#1)
    35400 coordinates: 
    35401 Matrix rotation and translation 
    35402 0.89969968 0.40483834 0.16323723 162.22508583 
    35403 -0.20999045 0.72925801 -0.65121943 244.63047450 
    35404 -0.38268065 0.55162366 0.74112539 239.09252445 
    35405 Axis 0.82555696 0.37468421 -0.42198038 
    35406 Axis point 0.00000000 -323.15021497 438.25527850 
    35407 Rotation angle (degrees) 46.76112549 
    35408 Shift along axis 124.69286920 
    35409  
    35410 
    35411 > hide #3 models
    35412 
    35413 > hide #!30 models
    35414 
    35415 > show #!30 models
    35416 
    35417 > show #!1 models
    35418 
    35419 > fitmap #30 inMap #1
    35420 
    35421 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map postprocess_20231221.mrc
    35422 (#1) using 2737 atoms 
    35423 average map value = 0.003385, steps = 28 
    35424 shifted from previous position = 0.0431 
    35425 rotated from previous position = 0.0812 degrees 
    35426 atoms outside contour = 1725, contour level = 0.0036964 
    35427  
    35428 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    35429 postprocess_20231221.mrc (#1) coordinates: 
    35430 Matrix rotation and translation 
    35431 0.80295655 -0.50066555 0.32341119 187.67454501 
    35432 -0.41013749 -0.07039394 0.90930300 269.81751356 
    35433 -0.43249050 -0.86277384 -0.26186499 189.64270915 
    35434 Axis -0.91879892 0.39192525 0.04693763 
    35435 Axis point 0.00000000 254.75671482 -21.74749759 
    35436 Rotation angle (degrees) 105.34622736 
    35437 Shift along axis -57.78549428 
    35438  
    35439 
    35440 > fitmap #30 inMap #1
    35441 
    35442 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map postprocess_20231221.mrc
    35443 (#1) using 2737 atoms 
    35444 average map value = 0.003386, steps = 28 
    35445 shifted from previous position = 0.0564 
    35446 rotated from previous position = 0.0807 degrees 
    35447 atoms outside contour = 1733, contour level = 0.0036964 
    35448  
    35449 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    35450 postprocess_20231221.mrc (#1) coordinates: 
    35451 Matrix rotation and translation 
    35452 0.80231444 -0.50188366 0.32311660 187.68914075 
    35453 -0.41022632 -0.07040021 0.90926244 269.80159975 
    35454 -0.43359649 -0.86206531 -0.26236899 189.56128331 
    35455 Axis -0.91856133 0.39241037 0.04753095 
    35456 Axis point 0.00000000 254.75820348 -21.64414576 
    35457 Rotation angle (degrees) 105.38046415 
    35458 Shift along axis -57.52101283 
    35459  
    35460 
    35461 > hide #!1 models
    35462 
    35463 > hide #!30 models
    35464 
    35465 > show #!30 models
    35466 
    35467 > select subtract #30
    35468 
    35469 Nothing selected 
    35470 
    35471 > select add #30
    35472 
    35473 2737 atoms, 2622 bonds, 1 pseudobond, 505 residues, 2 models selected 
    35474 
    35475 > select subtract #30
    35476 
    35477 Nothing selected 
    35478 
    35479 > hide #!30 models
    35480 
    35481 > show #31 models
    35482 
    35483 > select add #31
    35484 
    35485 2340 atoms, 2256 bonds, 394 residues, 1 model selected 
    35486 
    35487 > split #31 chains
    35488 
    35489 Split 5mc7_human_zeta1COPI.cif (#31) into 2 models 
    35490 Chain information for 5mc7_human_zeta1COPI.cif A #31.1 
    35491 --- 
    35492 Chain | Description 
    35493 A | No description available 
    35494  
    35495 Chain information for 5mc7_human_zeta1COPI.cif B #31.2 
    35496 --- 
    35497 Chain | Description 
    35498 B | No description available 
    35499  
    35500 
    35501 > hide #31.2 models
    35502 
    35503 > show #31.2 models
    35504 
    35505 > hide #31.2 models
    35506 
    35507 > show #31.2 models
    35508 
    35509 > close #31.2
    35510 
    35511 > select add #31.1
    35512 
    35513 1187 atoms, 1128 bonds, 214 residues, 1 model selected 
    35514 
    35515 > color sel yellow
    35516 
    35517 > select add #31
    35518 
    35519 1187 atoms, 1128 bonds, 214 residues, 2 models selected 
    35520 
    35521 > select subtract #31
    35522 
    35523 Nothing selected 
    35524 
    35525 > select add #31
    35526 
    35527 1187 atoms, 1128 bonds, 214 residues, 2 models selected 
    35528 
    35529 > show #!1 models
    35530 
    35531 > show #10 models
    35532 
    35533 > view matrix models
    35534 > #31,0.77045,-0.26029,0.58195,-46.985,0.36195,0.93005,-0.063212,-65.34,-0.52479,0.25934,0.81077,140.57
    35535 
    35536 > view matrix models
    35537 > #31,0.72521,-0.27949,0.62925,-43.367,0.34932,0.9369,0.013553,-90.273,-0.59334,0.20998,0.77708,189.06
    35538 
    35539 > ui mousemode right "translate selected models"
    35540 
    35541 > view matrix models
    35542 > #31,0.72521,-0.27949,0.62925,-16.885,0.34932,0.9369,0.013553,-51.066,-0.59334,0.20998,0.77708,176.45
    35543 
    35544 > view matrix models
    35545 > #31,0.72521,-0.27949,0.62925,-6.5132,0.34932,0.9369,0.013553,-57.31,-0.59334,0.20998,0.77708,174.64
    35546 
    35547 > hide #!1 models
    35548 
    35549 > view matrix models
    35550 > #31,0.72521,-0.27949,0.62925,-7.6962,0.34932,0.9369,0.013553,-59.076,-0.59334,0.20998,0.77708,174.86
    35551 
    35552 > ui mousemode right "move picked models"
    35553 
    35554 > ui mousemode right "rotate selected models"
    35555 
    35556 > view matrix models
    35557 > #31,-0.095195,0.87129,-0.48146,251.77,0.83505,-0.19338,-0.51506,343.26,-0.54187,-0.45107,-0.70916,887.8
    35558 
    35559 > ui mousemode right "translate selected models"
    35560 
    35561 > view matrix models
    35562 > #31,-0.095195,0.87129,-0.48146,244.89,0.83505,-0.19338,-0.51506,340.66,-0.54187,-0.45107,-0.70916,889.02
    35563 
    35564 > ui mousemode right "rotate selected models"
    35565 
    35566 > view matrix models
    35567 > #31,0.0027708,0.40312,-0.91514,517.14,0.90915,0.3801,0.17018,-105.02,0.41645,-0.83248,-0.36544,603.02
    35568 
    35569 > ui mousemode right "translate selected models"
    35570 
    35571 > view matrix models
    35572 > #31,0.0027708,0.40312,-0.91514,517.9,0.90915,0.3801,0.17018,-105.01,0.41645,-0.83248,-0.36544,601.65
    35573 
    35574 > view matrix models
    35575 > #31,0.0027708,0.40312,-0.91514,517.09,0.90915,0.3801,0.17018,-105.49,0.41645,-0.83248,-0.36544,602.57
    35576 
    35577 > ui mousemode right "rotate selected models"
    35578 
    35579 > view matrix models
    35580 > #31,-0.28237,0.90449,-0.31965,234.95,-0.86547,-0.096463,0.49159,477.04,0.4138,0.41545,0.81004,-208.33
    35581 
    35582 > view matrix models
    35583 > #31,0.41595,0.56615,-0.71166,268.31,-0.82648,0.5618,-0.036124,433.89,0.37936,0.6032,0.7016,-221.35
    35584 
    35585 > ui mousemode right "translate selected models"
    35586 
    35587 > view matrix models
    35588 > #31,0.41595,0.56615,-0.71166,277.82,-0.82648,0.5618,-0.036124,434.95,0.37936,0.6032,0.7016,-219.83
    35589 
    35590 > ui mousemode right "rotate selected models"
    35591 
    35592 > view matrix models
    35593 > #31,0.45932,0.67175,-0.58119,185.25,-0.76826,0.62885,0.11967,341.62,0.44587,0.39154,0.80492,-207.01
    35594 
    35595 > view matrix models
    35596 > #31,0.49942,0.66357,-0.55701,167.37,-0.76647,0.63812,0.072971,354.22,0.40386,0.39049,0.82729,-201.65
    35597 
    35598 > select add #10
    35599 
    35600 2607 atoms, 2569 bonds, 391 residues, 3 models selected 
    35601 
    35602 > select subtract #10
    35603 
    35604 1187 atoms, 1128 bonds, 214 residues, 2 models selected 
    35605 
    35606 > fitmap #31.1 inMap #1
    35607 
    35608 Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map
    35609 postprocess_20231221.mrc (#1) using 1187 atoms 
    35610 average map value = 0.003717, steps = 72 
    35611 shifted from previous position = 1.37 
    35612 rotated from previous position = 11.3 degrees 
    35613 atoms outside contour = 668, contour level = 0.0036964 
    35614  
    35615 Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to
    35616 postprocess_20231221.mrc (#1) coordinates: 
    35617 Matrix rotation and translation 
    35618 0.98920702 -0.11431776 -0.09165649 177.62995202 
    35619 0.10191685 0.98624349 -0.13014121 214.61813191 
    35620 0.10527306 0.11939526 0.98724989 218.15252352 
    35621 Axis 0.64906227 -0.51222791 0.56244176 
    35622 Axis point 0.00000000 -982.87079504 2257.03819953 
    35623 Rotation angle (degrees) 11.08286238 
    35624 Shift along axis 128.05759337 
    35625  
    35626 
    35627 > show #!1 models
    35628 
    35629 > view matrix models
    35630 > #31,0.35297,0.7657,-0.53769,171.74,0.58437,0.26839,0.76582,-173.96,0.7307,-0.58453,-0.35272,425.29
    35631 
    35632 > undo
    35633 
    35634 > fitmap #31.1 inMap #1
    35635 
    35636 Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map
    35637 postprocess_20231221.mrc (#1) using 1187 atoms 
    35638 average map value = 0.003717, steps = 60 
    35639 shifted from previous position = 0.0413 
    35640 rotated from previous position = 0.0922 degrees 
    35641 atoms outside contour = 665, contour level = 0.0036964 
    35642  
    35643 Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to
    35644 postprocess_20231221.mrc (#1) coordinates: 
    35645 Matrix rotation and translation 
    35646 0.98923110 -0.11511984 -0.09038398 177.64670787 
    35647 0.10292017 0.98620208 -0.12966451 214.58254620 
    35648 0.10406382 0.11896584 0.98742992 218.18063668 
    35649 Axis 0.64810713 -0.50686895 0.56836698 
    35650 Axis point 0.00000000 -971.46735600 2267.93030426 
    35651 Rotation angle (degrees) 11.05858996 
    35652 Shift along axis 130.37553701 
    35653  
    35654 
    35655 > fitmap #31.1 inMap #1
    35656 
    35657 Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map
    35658 postprocess_20231221.mrc (#1) using 1187 atoms 
    35659 average map value = 0.003716, steps = 44 
    35660 shifted from previous position = 0.0381 
    35661 rotated from previous position = 0.0919 degrees 
    35662 atoms outside contour = 667, contour level = 0.0036964 
    35663  
    35664 Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to
    35665 postprocess_20231221.mrc (#1) coordinates: 
    35666 Matrix rotation and translation 
    35667 0.98918508 -0.11442244 -0.09176266 177.64700501 
    35668 0.10202250 0.98624996 -0.13000930 214.61097362 
    35669 0.10537690 0.11924140 0.98725741 218.13649995 
    35670 Axis 0.64825051 -0.51271998 0.56292938 
    35671 Axis point 0.00000000 -984.03286467 2259.28865913 
    35672 Rotation angle (degrees) 11.08404793 
    35673 Shift along axis 127.91987227 
    35674  
    35675 
    35676 > fitmap #31.1 inMap #1
    35677 
    35678 Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map
    35679 postprocess_20231221.mrc (#1) using 1187 atoms 
    35680 average map value = 0.003717, steps = 44 
    35681 shifted from previous position = 0.0469 
    35682 rotated from previous position = 0.075 degrees 
    35683 atoms outside contour = 668, contour level = 0.0036964 
    35684  
    35685 Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to
    35686 postprocess_20231221.mrc (#1) coordinates: 
    35687 Matrix rotation and translation 
    35688 0.98923236 -0.11489400 -0.09065705 177.64035366 
    35689 0.10267391 0.98624230 -0.12955380 214.56846478 
    35690 0.10429477 0.11885070 0.98741942 218.18379972 
    35691 Axis 0.64778617 -0.50839292 0.56737088 
    35692 Axis point 0.00000000 -976.04731314 2269.13723907 
    35693 Rotation angle (degrees) 11.05396135 
    35694 Shift along axis 129.77901020 
    35695  
    35696 
    35697 > fitmap #31.1 inMap #1
    35698 
    35699 Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map
    35700 postprocess_20231221.mrc (#1) using 1187 atoms 
    35701 average map value = 0.003716, steps = 44 
    35702 shifted from previous position = 0.0412 
    35703 rotated from previous position = 0.0284 degrees 
    35704 atoms outside contour = 667, contour level = 0.0036964 
    35705  
    35706 Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to
    35707 postprocess_20231221.mrc (#1) coordinates: 
    35708 Matrix rotation and translation 
    35709 0.98924764 -0.11453745 -0.09094107 177.63369995 
    35710 0.10226801 0.98626419 -0.12970815 214.61188083 
    35711 0.10454836 0.11901312 0.98737304 218.16491755 
    35712 Axis 0.64853243 -0.50973217 0.56531302 
    35713 Axis point 0.00000000 -979.31739909 2265.77471243 
    35714 Rotation angle (degrees) 11.05533860 
    35715 Shift along axis 129.13810349 
    35716  
    35717 
    35718 > ui mousemode right zoom
    35719 
    35720 > hide #!1 models
    35721 
    35722 > ui mousemode right "translate selected models"
    35723 
    35724 > view matrix models
    35725 > #31,0.49942,0.66357,-0.55701,166.95,-0.76647,0.63812,0.072971,353.77,0.40386,0.39049,0.82729,-201
    35726 
    35727 > ui mousemode right "rotate selected models"
    35728 
    35729 > view matrix models
    35730 > #31,-0.0050664,0.88664,-0.46243,214.32,-0.99768,0.026918,0.062541,626.7,0.067899,0.46167,0.88445,-142.2
    35731 
    35732 > ui mousemode right "translate selected models"
    35733 
    35734 > view matrix models
    35735 > #31,-0.0050664,0.88664,-0.46243,215.66,-0.99768,0.026918,0.062541,624.93,0.067899,0.46167,0.88445,-143.47
    35736 
    35737 > fitmap #31.1 inMap #1
    35738 
    35739 Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map
    35740 postprocess_20231221.mrc (#1) using 1187 atoms 
    35741 average map value = 0.003637, steps = 68 
    35742 shifted from previous position = 1.88 
    35743 rotated from previous position = 18.3 degrees 
    35744 atoms outside contour = 677, contour level = 0.0036964 
    35745  
    35746 Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to
    35747 postprocess_20231221.mrc (#1) coordinates: 
    35748 Matrix rotation and translation 
    35749 0.97473504 0.20185998 -0.09562508 177.00592570 
    35750 -0.21326145 0.96834748 -0.12970238 220.13806386 
    35751 0.06641659 0.14681860 0.98693117 218.77322994 
    35752 Axis 0.52725961 -0.30897485 -0.79153764 
    35753 Axis point 987.15896034 -1139.52275349 0.00000000 
    35754 Rotation angle (degrees) 15.20210867 
    35755 Shift along axis -147.85629610 
    35756  
    35757 
    35758 > ui mousemode right "translate selected models"
    35759 
    35760 > view matrix models
    35761 > #31,-0.0050664,0.88664,-0.46243,213.12,-0.99768,0.026918,0.062541,623.69,0.067899,0.46167,0.88445,-140.94
    35762 
    35763 > ui mousemode right "rotate selected models"
    35764 
    35765 > view matrix models
    35766 > #31,0.5719,0.73327,-0.36777,56.314,-0.66712,0.67662,0.31167,225.21,0.47738,0.067104,0.87613,-132.67
    35767 
    35768 > ui mousemode right "translate selected models"
    35769 
    35770 > view matrix models
    35771 > #31,0.5719,0.73327,-0.36777,57.865,-0.66712,0.67662,0.31167,226.72,0.47738,0.067104,0.87613,-134.9
    35772 
    35773 > view matrix models
    35774 > #31,0.5719,0.73327,-0.36777,58.366,-0.66712,0.67662,0.31167,224.23,0.47738,0.067104,0.87613,-135.91
    35775 
    35776 > fitmap #31.1 inMap #1
    35777 
    35778 Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map
    35779 postprocess_20231221.mrc (#1) using 1187 atoms 
    35780 average map value = 0.004243, steps = 44 
    35781 shifted from previous position = 2.92 
    35782 rotated from previous position = 8.79 degrees 
    35783 atoms outside contour = 535, contour level = 0.0036964 
    35784  
    35785 Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to
    35786 postprocess_20231221.mrc (#1) coordinates: 
    35787 Matrix rotation and translation 
    35788 0.97561013 0.21805111 -0.02527050 173.84988966 
    35789 -0.21797583 0.97593735 0.00572980 216.59416419 
    35790 0.02591181 -0.00008169 0.99966423 218.26571160 
    35791 Axis -0.01323624 -0.11657272 -0.99309396 
    35792 Axis point 937.80314794 -677.56254760 0.00000000 
    35793 Rotation angle (degrees) 12.68140254 
    35794 Shift along axis -244.30844807 
    35795  
    35796 
    35797 > view matrix models
    35798 > #31,0.5719,0.73327,-0.36777,58.257,-0.66712,0.67662,0.31167,224.66,0.47738,0.067104,0.87613,-136.13
    35799 
    35800 > fitmap #31.1 inMap #1
    35801 
    35802 Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map
    35803 postprocess_20231221.mrc (#1) using 1187 atoms 
    35804 average map value = 0.004243, steps = 56 
    35805 shifted from previous position = 0.493 
    35806 rotated from previous position = 0.00302 degrees 
    35807 atoms outside contour = 536, contour level = 0.0036964 
    35808  
    35809 Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to
    35810 postprocess_20231221.mrc (#1) coordinates: 
    35811 Matrix rotation and translation 
    35812 0.97560056 0.21809656 -0.02524739 174.30252276 
    35813 -0.21802102 0.97592719 0.00574050 216.39994082 
    35814 0.02589160 -0.00009597 0.99966475 218.28650928 
    35815 Axis -0.01329055 -0.11645144 -0.99310746 
    35816 Axis point 937.10166342 -679.47384917 0.00000000 
    35817 Rotation angle (degrees) 12.68390747 
    35818 Shift along axis -244.29862027 
    35819  
    35820 
    35821 > fitmap #31.1 inMap #1
    35822 
    35823 Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map
    35824 postprocess_20231221.mrc (#1) using 1187 atoms 
    35825 average map value = 0.004242, steps = 28 
    35826 shifted from previous position = 0.0505 
    35827 rotated from previous position = 0.0784 degrees 
    35828 atoms outside contour = 536, contour level = 0.0036964 
    35829  
    35830 Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to
    35831 postprocess_20231221.mrc (#1) coordinates: 
    35832 Matrix rotation and translation 
    35833 0.97564166 0.21802433 -0.02426420 174.29818099 
    35834 -0.21792528 0.97594255 0.00668655 216.34230322 
    35835 0.02513830 -0.00123589 0.99968322 218.31938758 
    35836 Axis -0.01805431 -0.11258254 -0.99347834 
    35837 Axis point 940.89158557 -674.08609334 0.00000000 
    35838 Rotation angle (degrees) 12.67412881 
    35839 Shift along axis -244.39878296 
    35840  
    35841 
    35842 > fitmap #31.1 inMap #1
    35843 
    35844 Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map
    35845 postprocess_20231221.mrc (#1) using 1187 atoms 
    35846 average map value = 0.004243, steps = 28 
    35847 shifted from previous position = 0.0678 
    35848 rotated from previous position = 0.0773 degrees 
    35849 atoms outside contour = 534, contour level = 0.0036964 
    35850  
    35851 Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to
    35852 postprocess_20231221.mrc (#1) coordinates: 
    35853 Matrix rotation and translation 
    35854 0.97569828 0.21766563 -0.02519006 174.30319213 
    35855 -0.21758931 0.97602339 0.00576536 216.41284502 
    35856 0.02584101 -0.00014416 0.99966605 218.28451887 
    35857 Axis -0.01348355 -0.11643589 -0.99310668 
    35858 Axis point 938.87049799 -680.82686875 0.00000000 
    35859 Rotation angle (degrees) 12.65841235 
    35860 Shift along axis -244.32826222 
    35861  
    35862 
    35863 > fitmap #31.1 inMap #1
    35864 
    35865 Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map
    35866 postprocess_20231221.mrc (#1) using 1187 atoms 
    35867 average map value = 0.004243, steps = 44 
    35868 shifted from previous position = 0.0146 
    35869 rotated from previous position = 0.035 degrees 
    35870 atoms outside contour = 535, contour level = 0.0036964 
    35871  
    35872 Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to
    35873 postprocess_20231221.mrc (#1) coordinates: 
    35874 Matrix rotation and translation 
    35875 0.97558580 0.21813613 -0.02547497 174.30486945 
    35876 -0.21806593 0.97591834 0.00553590 216.40767360 
    35877 0.02606907 0.00015447 0.99966013 218.28104983 
    35878 Axis -0.01225085 -0.11734027 -0.99301620 
    35879 Axis point 936.10467349 -680.57464736 0.00000000 
    35880 Rotation angle (degrees) 12.68759066 
    35881 Shift along axis -244.28533769 
    35882  
    35883 
    35884 > fitmap #31.1 inMap #1
    35885 
    35886 Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map
    35887 postprocess_20231221.mrc (#1) using 1187 atoms 
    35888 average map value = 0.004242, steps = 28 
    35889 shifted from previous position = 0.0587 
    35890 rotated from previous position = 0.111 degrees 
    35891 atoms outside contour = 536, contour level = 0.0036964 
    35892  
    35893 Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to
    35894 postprocess_20231221.mrc (#1) coordinates: 
    35895 Matrix rotation and translation 
    35896 0.97564956 0.21800947 -0.02407940 174.29594873 
    35897 -0.21790629 0.97594558 0.00686077 216.33753389 
    35898 0.02499589 -0.00144665 0.99968651 218.32268651 
    35899 Axis -0.01893437 -0.11185298 -0.99354436 
    35900 Axis point 941.64347534 -673.08423480 0.00000000 
    35901 Rotation angle (degrees) 12.67227216 
    35902 Shift along axis -244.41145590 
    35903  
    35904 
    35905 > fitmap #31.1 inMap #1
    35906 
    35907 Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map
    35908 postprocess_20231221.mrc (#1) using 1187 atoms 
    35909 average map value = 0.004243, steps = 28 
    35910 shifted from previous position = 0.0707 
    35911 rotated from previous position = 0.0881 degrees 
    35912 atoms outside contour = 534, contour level = 0.0036964 
    35913  
    35914 Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to
    35915 postprocess_20231221.mrc (#1) coordinates: 
    35916 Matrix rotation and translation 
    35917 0.97573383 0.21751480 -0.02511586 174.30425498 
    35918 -0.21743675 0.97605700 0.00583087 216.41142752 
    35919 0.02578281 -0.00022827 0.99966754 218.28714955 
    35920 Axis -0.01383486 -0.11621723 -0.99312746 
    35921 Axis point 939.66803661 -680.97238480 0.00000000 
    35922 Rotation angle (degrees) 12.64917355 
    35923 Shift along axis -244.34917355 
    35924  
    35925 
    35926 > fitmap #10 inMap #1
    35927 
    35928 Fit molecule CopZ1_P61924.pdb (#10) to map postprocess_20231221.mrc (#1) using
    35929 1420 atoms 
    35930 average map value = 0.003933, steps = 44 
    35931 shifted from previous position = 0.0503 
    35932 rotated from previous position = 0.0659 degrees 
    35933 atoms outside contour = 724, contour level = 0.0036964 
    35934  
    35935 Position of CopZ1_P61924.pdb (#10) relative to postprocess_20231221.mrc (#1)
    35936 coordinates: 
    35937 Matrix rotation and translation 
    35938 0.16464547 -0.94010508 -0.29848672 230.52921764 
    35939 -0.38697262 0.21678845 -0.89624493 241.48307989 
    35940 0.90727287 0.26306886 -0.32810169 218.16058628 
    35941 Axis 0.65804065 -0.68440386 0.31396473 
    35942 Axis point 143.59602606 0.00000000 249.37721862 
    35943 Rotation angle (degrees) 118.25092460 
    35944 Shift along axis 54.92037460 
    35945  
    35946 
    35947 > fitmap #10 inMap #1
    35948 
    35949 Fit molecule CopZ1_P61924.pdb (#10) to map postprocess_20231221.mrc (#1) using
    35950 1420 atoms 
    35951 average map value = 0.003933, steps = 40 
    35952 shifted from previous position = 0.0453 
    35953 rotated from previous position = 0.0539 degrees 
    35954 atoms outside contour = 728, contour level = 0.0036964 
    35955  
    35956 Position of CopZ1_P61924.pdb (#10) relative to postprocess_20231221.mrc (#1)
    35957 coordinates: 
    35958 Matrix rotation and translation 
    35959 0.16475228 -0.93984435 -0.29924787 230.50212183 
    35960 -0.38665624 0.21756915 -0.89619229 241.46489641 
    35961 0.90738837 0.26335578 -0.32755167 218.19248372 
    35962 Axis 0.65788547 -0.68460159 0.31385885 
    35963 Axis point 143.42644626 0.00000000 249.42964094 
    35964 Rotation angle (degrees) 118.20418399 
    35965 Shift along axis 54.81838662 
    35966  
    35967 
    35968 > fitmap #10 inMap #1
    35969 
    35970 Fit molecule CopZ1_P61924.pdb (#10) to map postprocess_20231221.mrc (#1) using
    35971 1420 atoms 
    35972 average map value = 0.003933, steps = 44 
    35973 shifted from previous position = 0.0111 
    35974 rotated from previous position = 0.0464 degrees 
    35975 atoms outside contour = 730, contour level = 0.0036964 
    35976  
    35977 Position of CopZ1_P61924.pdb (#10) relative to postprocess_20231221.mrc (#1)
    35978 coordinates: 
    35979 Matrix rotation and translation 
    35980 0.16528469 -0.93968504 -0.29945452 230.49692380 
    35981 -0.38615897 0.21772757 -0.89636821 241.46057391 
    35982 0.90750329 0.26379299 -0.32688077 218.20121332 
    35983 Axis 0.65796097 -0.68450069 0.31392064 
    35984 Axis point 143.36777827 0.00000000 249.51847068 
    35985 Rotation angle (degrees) 118.15992656 
    35986 Shift along axis 54.87591693 
    35987  
    35988 
    35989 > fitmap #10 inMap #1
    35990 
    35991 Fit molecule CopZ1_P61924.pdb (#10) to map postprocess_20231221.mrc (#1) using
    35992 1420 atoms 
    35993 average map value = 0.003933, steps = 44 
    35994 shifted from previous position = 0.00482 
    35995 rotated from previous position = 0.00886 degrees 
    35996 atoms outside contour = 729, contour level = 0.0036964 
    35997  
    35998 Position of CopZ1_P61924.pdb (#10) relative to postprocess_20231221.mrc (#1)
    35999 coordinates: 
    36000 Matrix rotation and translation 
    36001 0.16517051 -0.93970815 -0.29944501 230.49930068 
    36002 -0.38625587 0.21772958 -0.89632597 241.46236599 
    36003 0.90748285 0.26370901 -0.32700528 218.19738498 
    36004 Axis 0.65793667 -0.68453289 0.31390135 
    36005 Axis point 143.37628380 0.00000000 249.50094452 
    36006 Rotation angle (degrees) 118.16761754 
    36007 Shift along axis 54.85746595 
    36008  
    36009 
    36010 > fitmap #10 inMap #1
    36011 
    36012 Fit molecule CopZ1_P61924.pdb (#10) to map postprocess_20231221.mrc (#1) using
    36013 1420 atoms 
    36014 average map value = 0.003933, steps = 36 
    36015 shifted from previous position = 0.00809 
    36016 rotated from previous position = 0.0184 degrees 
    36017 atoms outside contour = 727, contour level = 0.0036964 
    36018  
    36019 Position of CopZ1_P61924.pdb (#10) relative to postprocess_20231221.mrc (#1)
    36020 coordinates: 
    36021 Matrix rotation and translation 
    36022 0.16519231 -0.93971155 -0.29942231 230.49169125 
    36023 -0.38654060 0.21761768 -0.89623039 241.46358631 
    36024 0.90735763 0.26378925 -0.32728790 218.19578263 
    36025 Axis 0.65800248 -0.68452651 0.31377732 
    36026 Axis point 143.40144878 -0.00000000 249.45936266 
    36027 Rotation angle (degrees) 118.17973038 
    36028 Shift along axis 54.84076550 
    36029  
    36030 
    36031 > hide #10 models
    36032 
    36033 > hide #!31 models
    36034 
    36035 > select subtract #31
    36036 
    36037 Nothing selected 
    36038 
    36039 > show #32 models
    36040 
    36041 > split #32 chains
    36042 
    36043 Split 5mu7_Thermophila_beta_deltaCOPI.cif (#32) into 2 models 
    36044 Chain information for 5mu7_Thermophila_beta_deltaCOPI.cif A #32.1 
    36045 --- 
    36046 Chain | Description 
    36047 A | No description available 
    36048  
    36049 Chain information for 5mu7_Thermophila_beta_deltaCOPI.cif B #32.2 
    36050 --- 
    36051 Chain | Description 
    36052 B | No description available 
    36053  
    36054 
    36055 > select add #32.1
    36056 
    36057 2991 atoms, 3010 bonds, 400 residues, 1 model selected 
    36058 
    36059 > view matrix models #32.1,1,0,0,310.44,0,1,0,269.77,0,0,1,353.04
    36060 
    36061 > undo
    36062 
    36063 > ui mousemode right zoom
    36064 
    36065 > show #4 models
    36066 
    36067 > show #!9 models
    36068 
    36069 > hide #!32 models
    36070 
    36071 > show #!32 models
    36072 
    36073 > ui mousemode right "translate selected models"
    36074 
    36075 > select add #32
    36076 
    36077 4213 atoms, 4232 bonds, 565 residues, 3 models selected 
    36078 
    36079 > view matrix models #32,1,0,0,6.3488,0,1,0,-55.027,0,0,1,-14.936
    36080 
    36081 > hide #!9 models
    36082 
    36083 > show #8 models
    36084 
    36085 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    36086 > dataset/Chimera sessions/20240212_leaf_fitting_v9.cxs"
    36087 
    36088 > select subtract #32.1
    36089 
    36090 1222 atoms, 1222 bonds, 165 residues, 2 models selected 
    36091 
    36092 > color sel sienna
    36093 
    36094 > select subtract #32.2
    36095 
    36096 1 model selected 
    36097 
    36098 > select add #32.1
    36099 
    36100 2991 atoms, 3010 bonds, 400 residues, 2 models selected 
    36101 
    36102 > color sel dark green
    36103 
    36104 > select subtract #32.1
    36105 
    36106 1 model selected 
    36107 
    36108 > select add #32
    36109 
    36110 4213 atoms, 4232 bonds, 565 residues, 3 models selected 
    36111 
    36112 > select subtract #32
    36113 
    36114 Nothing selected 
    36115 
    36116 > select add #32
    36117 
    36118 4213 atoms, 4232 bonds, 565 residues, 3 models selected 
    36119 
    36120 > ui mousemode right "rotate selected models"
    36121 
    36122 > view matrix models
    36123 > #32,0.86713,-0.47402,-0.15291,246.78,0.40908,0.50265,0.76157,-304.31,-0.28414,-0.72294,0.62978,426.28
    36124 
    36125 > view matrix models
    36126 > #32,0.80472,-0.48596,-0.34097,336.09,0.44907,0.12266,0.88504,-245.39,-0.38827,-0.86533,0.31694,611.99
    36127 
    36128 > ui mousemode right "translate selected models"
    36129 
    36130 > view matrix models
    36131 > #32,0.80472,-0.48596,-0.34097,286.27,0.44907,0.12266,0.88504,-195.95,-0.38827,-0.86533,0.31694,603.62
    36132 
    36133 > ui mousemode right "rotate selected models"
    36134 
    36135 > view matrix models
    36136 > #32,-0.69152,-0.70058,0.17603,670.7,-0.20042,-0.048039,-0.97853,712.99,0.69399,-0.71196,-0.10719,343.18
    36137 
    36138 > ui mousemode right "translate selected models"
    36139 
    36140 > view matrix models
    36141 > #32,-0.69152,-0.70058,0.17603,672.68,-0.20042,-0.048039,-0.97853,719.82,0.69399,-0.71196,-0.10719,360.23
    36142 
    36143 > ui mousemode right zoom
    36144 
    36145 > hide #!32 models
    36146 
    36147 > show #!32 models
    36148 
    36149 > hide #!32 models
    36150 
    36151 > show #!32 models
    36152 
    36153 > hide #!32 models
    36154 
    36155 > show #!32 models
    36156 
    36157 > ui mousemode right "rotate selected models"
    36158 
    36159 > view matrix models
    36160 > #32,-0.28518,-0.53956,-0.79218,823.6,0.94948,-0.04611,-0.31041,106.73,0.13096,-0.84068,0.52545,368.03
    36161 
    36162 > ui mousemode right "translate selected models"
    36163 
    36164 > view matrix models
    36165 > #32,-0.28518,-0.53956,-0.79218,806.69,0.94948,-0.04611,-0.31041,118.41,0.13096,-0.84068,0.52545,363.68
    36166 
    36167 > view matrix models
    36168 > #32,-0.28518,-0.53956,-0.79218,806.23,0.94948,-0.04611,-0.31041,118.56,0.13096,-0.84068,0.52545,363.19
    36169 
    36170 > view matrix models
    36171 > #32,-0.28518,-0.53956,-0.79218,804.04,0.94948,-0.04611,-0.31041,116.36,0.13096,-0.84068,0.52545,361.62
    36172 
    36173 > view matrix models
    36174 > #32,-0.28518,-0.53956,-0.79218,804.76,0.94948,-0.04611,-0.31041,115.3,0.13096,-0.84068,0.52545,362.39
    36175 
    36176 > ui mousemode right "rotate selected models"
    36177 
    36178 > view matrix models
    36179 > #32,-0.0016578,-0.50367,-0.8639,723.67,0.9595,0.24256,-0.14326,-31.15,0.2817,-0.82915,0.48287,322.86
    36180 
    36181 > ui mousemode right "translate selected models"
    36182 
    36183 > view matrix models
    36184 > #32,-0.0016578,-0.50367,-0.8639,726.03,0.9595,0.24256,-0.14326,-32.307,0.2817,-0.82915,0.48287,323.95
    36185 
    36186 > ui mousemode right "rotate selected models"
    36187 
    36188 > view matrix models
    36189 > #32,-0.1547,-0.53164,-0.83273,774.68,0.93159,0.20215,-0.30212,43.964,0.32895,-0.8225,0.46399,312.71
    36190 
    36191 > ui mousemode right "translate selected models"
    36192 
    36193 > view matrix models
    36194 > #32,-0.1547,-0.53164,-0.83273,776.7,0.93159,0.20215,-0.30212,41.911,0.32895,-0.8225,0.46399,314.56
    36195 
    36196 > view matrix models
    36197 > #32,-0.1547,-0.53164,-0.83273,773.69,0.93159,0.20215,-0.30212,39.425,0.32895,-0.8225,0.46399,315.24
    36198 
    36199 > ui mousemode right "rotate selected models"
    36200 
    36201 > view matrix models
    36202 > #32,-0.5662,-0.55884,-0.6059,839.99,0.80288,-0.20757,-0.55883,295.21,0.18653,-0.80288,0.56621,321.67
    36203 
    36204 > ui mousemode right "translate selected models"
    36205 
    36206 > view matrix models
    36207 > #32,-0.5662,-0.55884,-0.6059,839.41,0.80288,-0.20757,-0.55883,296.1,0.18653,-0.80288,0.56621,319.88
    36208 
    36209 > ui mousemode right "rotate selected models"
    36210 
    36211 > view matrix models
    36212 > #32,-0.50172,-0.63014,-0.59262,834.98,0.83927,-0.18865,-0.50994,261.4,0.20954,-0.75322,0.62351,277.44
    36213 
    36214 > ui mousemode right "translate selected models"
    36215 
    36216 > view matrix models
    36217 > #32,-0.50172,-0.63014,-0.59262,835.58,0.83927,-0.18865,-0.50994,261.52,0.20954,-0.75322,0.62351,278.27
    36218 
    36219 > view matrix models
    36220 > #32,-0.50172,-0.63014,-0.59262,835.95,0.83927,-0.18865,-0.50994,262.26,0.20954,-0.75322,0.62351,278.02
    36221 
    36222 > ui mousemode right "rotate selected models"
    36223 
    36224 > view matrix models
    36225 > #32,-0.38225,-0.59979,-0.70294,824.97,0.90132,-0.074311,-0.42672,178.3,0.20371,-0.7967,0.56902,311.9
    36226 
    36227 > view matrix models
    36228 > #32,-0.38961,-0.59043,-0.70683,825.91,0.89701,-0.069323,-0.43653,181.59,0.20874,-0.80411,0.55663,316.73
    36229 
    36230 > ui mousemode right "translate selected models"
    36231 
    36232 > view matrix models
    36233 > #32,-0.38961,-0.59043,-0.70683,825.37,0.89701,-0.069323,-0.43653,181.63,0.20874,-0.80411,0.55663,316.62
    36234 
    36235 > select subtract #32
    36236 
    36237 Nothing selected 
    36238 
    36239 > show #!1 models
    36240 
    36241 > select add #32.1
    36242 
    36243 2991 atoms, 3010 bonds, 400 residues, 1 model selected 
    36244 
    36245 > fitmap #32.1 inMap #1
    36246 
    36247 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map
    36248 postprocess_20231221.mrc (#1) using 2991 atoms 
    36249 average map value = 0.004241, steps = 88 
    36250 shifted from previous position = 3.45 
    36251 rotated from previous position = 11.7 degrees 
    36252 atoms outside contour = 1593, contour level = 0.0036964 
    36253  
    36254 Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to
    36255 postprocess_20231221.mrc (#1) coordinates: 
    36256 Matrix rotation and translation 
    36257 0.99523070 -0.08932351 0.03920676 204.56594606 
    36258 0.08053771 0.97916422 0.18641649 155.92418488 
    36259 -0.05504123 -0.18236979 0.98168820 251.08480869 
    36260 Axis -0.88476167 0.22611203 0.40751705 
    36261 Axis point 0.00000000 1545.72793857 -716.32216947 
    36262 Rotation angle (degrees) 12.02918781 
    36263 Shift along axis -43.41443344 
    36264  
    36265 
    36266 > fitmap #32.1 inMap #1
    36267 
    36268 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map
    36269 postprocess_20231221.mrc (#1) using 2991 atoms 
    36270 average map value = 0.004241, steps = 88 
    36271 shifted from previous position = 3.45 
    36272 rotated from previous position = 11.7 degrees 
    36273 atoms outside contour = 1593, contour level = 0.0036964 
    36274  
    36275 Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to
    36276 postprocess_20231221.mrc (#1) coordinates: 
    36277 Matrix rotation and translation 
    36278 0.99523070 -0.08932351 0.03920676 204.56594606 
    36279 0.08053771 0.97916422 0.18641649 155.92418488 
    36280 -0.05504123 -0.18236979 0.98168820 251.08480869 
    36281 Axis -0.88476167 0.22611203 0.40751705 
    36282 Axis point 0.00000000 1545.72793857 -716.32216947 
    36283 Rotation angle (degrees) 12.02918781 
    36284 Shift along axis -43.41443344 
    36285  
    36286 
    36287 > select subtract #32.1
    36288 
    36289 Nothing selected 
    36290 
    36291 > select add #32.2
    36292 
    36293 1222 atoms, 1222 bonds, 165 residues, 1 model selected 
    36294 
    36295 > fitmap #32.2 inMap #1
    36296 
    36297 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map
    36298 postprocess_20231221.mrc (#1) using 1222 atoms 
    36299 average map value = 0.004216, steps = 52 
    36300 shifted from previous position = 1.66 
    36301 rotated from previous position = 10.6 degrees 
    36302 atoms outside contour = 618, contour level = 0.0036964 
    36303  
    36304 Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to
    36305 postprocess_20231221.mrc (#1) coordinates: 
    36306 Matrix rotation and translation 
    36307 0.98239247 0.00608297 0.18672983 201.11786552 
    36308 -0.00915230 0.99983674 0.01557958 155.89204427 
    36309 -0.18660457 -0.01701427 0.98228776 245.74518368 
    36310 Axis -0.08690208 0.99538837 -0.04062043 
    36311 Axis point 1439.71905732 0.00000000 -1000.73205923 
    36312 Rotation angle (degrees) 10.80879096 
    36313 Shift along axis 127.71329308 
    36314  
    36315 
    36316 > fitmap #32.2 inMap #1
    36317 
    36318 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map
    36319 postprocess_20231221.mrc (#1) using 1222 atoms 
    36320 average map value = 0.004217, steps = 48 
    36321 shifted from previous position = 0.0497 
    36322 rotated from previous position = 0.0595 degrees 
    36323 atoms outside contour = 616, contour level = 0.0036964 
    36324  
    36325 Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to
    36326 postprocess_20231221.mrc (#1) coordinates: 
    36327 Matrix rotation and translation 
    36328 0.98236776 0.00609305 0.18685946 201.07531739 
    36329 -0.00897212 0.99985366 0.01456580 155.88604759 
    36330 -0.18674336 -0.01598549 0.98227867 245.68947894 
    36331 Axis -0.08143698 0.99586917 -0.04015745 
    36332 Axis point 1437.96863175 0.00000000 -996.61080216 
    36333 Rotation angle (degrees) 10.81137091 
    36334 Shift along axis 129.00087941 
    36335  
    36336 
    36337 > select add #32
    36338 
    36339 4213 atoms, 4232 bonds, 565 residues, 3 models selected 
    36340 
    36341 > select subtract #32
    36342 
    36343 Nothing selected 
    36344 
    36345 > hide #!32 models
    36346 
    36347 > show #!32 models
    36348 
    36349 > hide #!32 models
    36350 
    36351 > show #!32 models
    36352 
    36353 > hide #!1 models
    36354 
    36355 > select add #32.2
    36356 
    36357 1222 atoms, 1222 bonds, 165 residues, 1 model selected 
    36358 
    36359 > view matrix models
    36360 > #32.2,0.98283,0.0078888,0.18437,313.02,-0.0096897,0.99991,0.0088691,268.96,-0.18428,-0.010503,0.98282,357.09
    36361 
    36362 > fitmap #32.2 inMap #1
    36363 
    36364 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map
    36365 postprocess_20231221.mrc (#1) using 1222 atoms 
    36366 average map value = 0.004217, steps = 48 
    36367 shifted from previous position = 1.52 
    36368 rotated from previous position = 0.00409 degrees 
    36369 atoms outside contour = 616, contour level = 0.0036964 
    36370  
    36371 Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to
    36372 postprocess_20231221.mrc (#1) coordinates: 
    36373 Matrix rotation and translation 
    36374 0.98236810 0.00610753 0.18685720 201.07437146 
    36375 -0.00899935 0.99985245 0.01463173 155.88746910 
    36376 -0.18674027 -0.01605534 0.98227812 245.69185612 
    36377 Axis -0.08179732 0.99583518 -0.04026784 
    36378 Axis point 1438.08129766 0.00000000 -996.81322728 
    36379 Rotation angle (degrees) 10.81158760 
    36380 Shift along axis 128.89739988 
    36381  
    36382 
    36383 > view matrix models
    36384 > #32.2,0.98283,0.0079035,0.18437,313.39,-0.009717,0.99991,0.0089351,268.63,-0.18428,-0.010573,0.98282,357
    36385 
    36386 > fitmap #32.2 inMap #1
    36387 
    36388 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map
    36389 postprocess_20231221.mrc (#1) using 1222 atoms 
    36390 average map value = 0.004217, steps = 48 
    36391 shifted from previous position = 1.29 
    36392 rotated from previous position = 0.0164 degrees 
    36393 atoms outside contour = 617, contour level = 0.0036964 
    36394  
    36395 Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to
    36396 postprocess_20231221.mrc (#1) coordinates: 
    36397 Matrix rotation and translation 
    36398 0.98238754 0.00633303 0.18674746 201.05607706 
    36399 -0.00924431 0.99984888 0.01472270 155.89686848 
    36400 -0.18662599 -0.01618975 0.98229763 245.68968712 
    36401 Axis -0.08243879 0.99572992 -0.04154239 
    36402 Axis point 1439.69594941 0.00000000 -997.54365442 
    36403 Rotation angle (degrees) 10.80618268 
    36404 Shift along axis 128.44982063 
    36405  
    36406 
    36407 > fitmap #32.2 inMap #1
    36408 
    36409 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map
    36410 postprocess_20231221.mrc (#1) using 1222 atoms 
    36411 average map value = 0.004216, steps = 44 
    36412 shifted from previous position = 0.0615 
    36413 rotated from previous position = 0.102 degrees 
    36414 atoms outside contour = 619, contour level = 0.0036964 
    36415  
    36416 Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to
    36417 postprocess_20231221.mrc (#1) coordinates: 
    36418 Matrix rotation and translation 
    36419 0.98230680 0.00593569 0.18718472 201.13630720 
    36420 -0.00917519 0.99982268 0.01644478 155.90258547 
    36421 -0.18705391 -0.01787128 0.98218708 245.78808678 
    36422 Axis -0.09123885 0.99501825 -0.04017650 
    36423 Axis point 1436.53838089 0.00000000 -1000.60261088 
    36424 Rotation angle (degrees) 10.83936585 
    36425 Shift along axis 126.89956630 
    36426  
    36427 
    36428 > fitmap #32.2 inMap #1
    36429 
    36430 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map
    36431 postprocess_20231221.mrc (#1) using 1222 atoms 
    36432 average map value = 0.004216, steps = 48 
    36433 shifted from previous position = 0.0108 
    36434 rotated from previous position = 0.0508 degrees 
    36435 atoms outside contour = 617, contour level = 0.0036964 
    36436  
    36437 Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to
    36438 postprocess_20231221.mrc (#1) coordinates: 
    36439 Matrix rotation and translation 
    36440 0.98239838 0.00615838 0.18669626 201.10767232 
    36441 -0.00925467 0.99983364 0.01571762 155.89759312 
    36442 -0.18656840 -0.01716878 0.98229194 245.74769396 
    36443 Axis -0.08769065 0.99529959 -0.04109847 
    36444 Axis point 1440.30349037 0.00000000 -1001.25410015 
    36445 Rotation angle (degrees) 10.80772335 
    36446 Shift along axis 127.42969183 
    36447  
    36448 
    36449 > fitmap #8 inMap #1
    36450 
    36451 Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462
    36452 atoms 
    36453 average map value = 0.003729, steps = 40 
    36454 shifted from previous position = 0.0262 
    36455 rotated from previous position = 0.0998 degrees 
    36456 atoms outside contour = 873, contour level = 0.0036964 
    36457  
    36458 Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1)
    36459 coordinates: 
    36460 Matrix rotation and translation 
    36461 0.23865497 0.93132114 0.27510863 -92.99261701 
    36462 -0.88651295 0.09329923 0.45319978 105.78305390 
    36463 0.39640711 -0.35204574 0.84789457 472.37094058 
    36464 Axis -0.40426058 -0.06089596 -0.91261441 
    36465 Axis point -102.29713427 189.82668068 0.00000000 
    36466 Rotation angle (degrees) 84.84074291 
    36467 Shift along axis -399.94103851 
    36468  
    36469 
    36470 > fitmap #8 inMap #1
    36471 
    36472 Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462
    36473 atoms 
    36474 average map value = 0.003728, steps = 48 
    36475 shifted from previous position = 0.0483 
    36476 rotated from previous position = 0.0351 degrees 
    36477 atoms outside contour = 875, contour level = 0.0036964 
    36478  
    36479 Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1)
    36480 coordinates: 
    36481 Matrix rotation and translation 
    36482 0.23841751 0.93124468 0.27557296 -92.95214680 
    36483 -0.88673475 0.09302332 0.45282244 105.83055914 
    36484 0.39605377 -0.35232091 0.84794539 472.46264138 
    36485 Axis -0.40420083 -0.06048419 -0.91266826 
    36486 Axis point -102.16592094 189.89358785 0.00000000 
    36487 Rotation angle (degrees) 84.85404781 
    36488 Shift along axis -400.03139873 
    36489  
    36490 
    36491 > fitmap #8 inMap #1
    36492 
    36493 Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462
    36494 atoms 
    36495 average map value = 0.003728, steps = 48 
    36496 shifted from previous position = 0.0228 
    36497 rotated from previous position = 0.118 degrees 
    36498 atoms outside contour = 877, contour level = 0.0036964 
    36499  
    36500 Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1)
    36501 coordinates: 
    36502 Matrix rotation and translation 
    36503 0.23978913 0.93130708 0.27416839 -92.95993950 
    36504 -0.88604379 0.09452161 0.45386351 105.51737731 
    36505 0.39677146 -0.35175673 0.84784410 472.35122351 
    36506 Axis -0.40449126 -0.06155738 -0.91246781 
    36507 Axis point -102.60506985 189.74855585 0.00000000 
    36508 Rotation angle (degrees) 84.77440663 
    36509 Shift along axis -399.89917828 
    36510  
    36511 
    36512 > fitmap #8 inMap #1
    36513 
    36514 Fit molecule CopD_Q5XJY5 (#8) to map postprocess_20231221.mrc (#1) using 1462
    36515 atoms 
    36516 average map value = 0.003728, steps = 48 
    36517 shifted from previous position = 0.00444 
    36518 rotated from previous position = 0.0249 degrees 
    36519 atoms outside contour = 878, contour level = 0.0036964 
    36520  
    36521 Position of CopD_Q5XJY5 (#8) relative to postprocess_20231221.mrc (#1)
    36522 coordinates: 
    36523 Matrix rotation and translation 
    36524 0.24019715 0.93124148 0.27403402 -92.90318641 
    36525 -0.88593165 0.09491266 0.45400078 105.41274879 
    36526 0.39677506 -0.35182511 0.84781404 472.36960966 
    36527 Axis -0.40460883 -0.06162883 -0.91241086 
    36528 Axis point -102.67598760 189.73986486 0.00000000 
    36529 Rotation angle (degrees) 84.75228379 
    36530 Shift along axis -399.90217788 
    36531  
    36532 
    36533 > fitmap #32.2 inMap #1
    36534 
    36535 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map
    36536 postprocess_20231221.mrc (#1) using 1222 atoms 
    36537 average map value = 0.004216, steps = 48 
    36538 shifted from previous position = 0.00417 
    36539 rotated from previous position = 0.0207 degrees 
    36540 atoms outside contour = 618, contour level = 0.0036964 
    36541  
    36542 Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to
    36543 postprocess_20231221.mrc (#1) coordinates: 
    36544 Matrix rotation and translation 
    36545 0.98241385 0.00607818 0.18661745 201.11227473 
    36546 -0.00911074 0.99983995 0.01539681 155.88981786 
    36547 -0.18649400 -0.01682626 0.98231200 245.73446032 
    36548 Axis -0.08597216 0.99547303 -0.04052452 
    36549 Axis point 1440.38116124 0.00000000 -1000.87336171 
    36550 Rotation angle (degrees) 10.80132904 
    36551 Shift along axis 127.93578107 
    36552  
    36553 
    36554 > fitmap #32.2 inMap #1
    36555 
    36556 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map
    36557 postprocess_20231221.mrc (#1) using 1222 atoms 
    36558 average map value = 0.004217, steps = 40 
    36559 shifted from previous position = 0.0531 
    36560 rotated from previous position = 0.0392 degrees 
    36561 atoms outside contour = 617, contour level = 0.0036964 
    36562  
    36563 Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to
    36564 postprocess_20231221.mrc (#1) coordinates: 
    36565 Matrix rotation and translation 
    36566 0.98241386 0.00649415 0.18660341 201.04872379 
    36567 -0.00941781 0.99984633 0.01478552 155.90228349 
    36568 -0.18647871 -0.01628290 0.98232406 245.68872568 
    36569 Axis -0.08291291 0.99565165 -0.04246457 
    36570 Axis point 1441.33793611 0.00000000 -998.50320932 
    36571 Rotation angle (degrees) 10.79850883 
    36572 Shift along axis 128.12176560 
    36573  
    36574 
    36575 > fitmap #32.2 inMap #1
    36576 
    36577 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map
    36578 postprocess_20231221.mrc (#1) using 1222 atoms 
    36579 average map value = 0.004217, steps = 40 
    36580 shifted from previous position = 0.0198 
    36581 rotated from previous position = 0.0275 degrees 
    36582 atoms outside contour = 616, contour level = 0.0036964 
    36583  
    36584 Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to
    36585 postprocess_20231221.mrc (#1) coordinates: 
    36586 Matrix rotation and translation 
    36587 0.98235946 0.00617017 0.18690057 201.08453605 
    36588 -0.00913930 0.99984529 0.01502867 155.89330045 
    36589 -0.18677893 -0.01647170 0.98226387 245.71224507 
    36590 Axis -0.08392998 0.99563642 -0.04079075 
    36591 Axis point 1438.29185698 0.00000000 -997.75841929 
    36592 Rotation angle (degrees) 10.81617490 
    36593 Shift along axis 128.31323939 
    36594  
    36595 
    36596 > select subtract #32.2
    36597 
    36598 Nothing selected 
    36599 
    36600 > select add #32.1
    36601 
    36602 2991 atoms, 3010 bonds, 400 residues, 1 model selected 
    36603 
    36604 > view matrix models
    36605 > #32.1,0.99551,-0.087137,0.037019,318.16,0.079076,0.9803,0.18098,267.67,-0.05206,-0.17724,0.98279,362.86
    36606 
    36607 > ui mousemode right "rotate selected models"
    36608 
    36609 > view matrix models
    36610 > #32.1,0.99092,-0.05475,0.1228,318,0.062046,0.99648,-0.056389,265.34,-0.11928,0.063496,0.99083,356.58
    36611 
    36612 > fitmap #32.1 inMap #1
    36613 
    36614 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map
    36615 postprocess_20231221.mrc (#1) using 2991 atoms 
    36616 average map value = 0.004241, steps = 84 
    36617 shifted from previous position = 2.25 
    36618 rotated from previous position = 14.6 degrees 
    36619 atoms outside contour = 1592, contour level = 0.0036964 
    36620  
    36621 Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to
    36622 postprocess_20231221.mrc (#1) coordinates: 
    36623 Matrix rotation and translation 
    36624 0.99530720 -0.08850785 0.03911444 204.53962622 
    36625 0.07970003 0.97905488 0.18734845 155.90993657 
    36626 -0.05487699 -0.18335184 0.98151445 251.09966490 
    36627 Axis -0.88729237 0.22497388 0.40261520 
    36628 Axis point 0.00000000 1541.01835524 -714.32479979 
    36629 Rotation angle (degrees) 12.05755199 
    36630 Shift along axis -45.31424535 
    36631  
    36632 
    36633 > fitmap #32.1 inMap #1
    36634 
    36635 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map
    36636 postprocess_20231221.mrc (#1) using 2991 atoms 
    36637 average map value = 0.00424, steps = 48 
    36638 shifted from previous position = 0.0448 
    36639 rotated from previous position = 0.0377 degrees 
    36640 atoms outside contour = 1596, contour level = 0.0036964 
    36641  
    36642 Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to
    36643 postprocess_20231221.mrc (#1) coordinates: 
    36644 Matrix rotation and translation 
    36645 0.99528348 -0.08879701 0.03906262 204.56589890 
    36646 0.08002562 0.97913646 0.18678247 155.93880820 
    36647 -0.05483336 -0.18277550 0.98162438 251.08241743 
    36648 Axis -0.88622599 0.22516917 0.40484854 
    36649 Axis point 0.00000000 1544.34030617 -716.04620285 
    36650 Rotation angle (degrees) 12.03452034 
    36651 Shift along axis -44.52865349 
    36652  
    36653 
    36654 > fitmap #32.1 inMap #1
    36655 
    36656 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map
    36657 postprocess_20231221.mrc (#1) using 2991 atoms 
    36658 average map value = 0.00424, steps = 40 
    36659 shifted from previous position = 0.0342 
    36660 rotated from previous position = 0.0314 degrees 
    36661 atoms outside contour = 1594, contour level = 0.0036964 
    36662  
    36663 Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to
    36664 postprocess_20231221.mrc (#1) coordinates: 
    36665 Matrix rotation and translation 
    36666 0.99532569 -0.08829616 0.03912245 204.54167069 
    36667 0.07951145 0.97914249 0.18697037 155.91860289 
    36668 -0.05481522 -0.18298573 0.98158622 251.07444595 
    36669 Axis -0.88728134 0.22529470 0.40246008 
    36670 Axis point 0.00000000 1543.83636390 -716.29708101 
    36671 Rotation angle (degrees) 12.03313503 
    36672 Shift along axis -45.31093217 
    36673  
    36674 
    36675 > fitmap #32.1 inMap #1
    36676 
    36677 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map
    36678 postprocess_20231221.mrc (#1) using 2991 atoms 
    36679 average map value = 0.004241, steps = 44 
    36680 shifted from previous position = 0.0371 
    36681 rotated from previous position = 0.0216 degrees 
    36682 atoms outside contour = 1596, contour level = 0.0036964 
    36683  
    36684 Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to
    36685 postprocess_20231221.mrc (#1) coordinates: 
    36686 Matrix rotation and translation 
    36687 0.99529199 -0.08866635 0.03914245 204.54651877 
    36688 0.07987446 0.97912152 0.18692543 155.93624436 
    36689 -0.05489921 -0.18291890 0.98159399 251.10027350 
    36690 Axis -0.88654561 0.22542516 0.40400542 
    36691 Axis point 0.00000000 1543.58380884 -715.76424350 
    36692 Rotation angle (degrees) 12.03957768 
    36693 Shift along axis -44.74199257 
    36694  
    36695 
    36696 > show #!1 models
    36697 
    36698 > select subtract #32.1
    36699 
    36700 Nothing selected 
    36701 
    36702 > hide #32.1 models
    36703 
    36704 > show #32.1 models
    36705 
    36706 > hide #32.1 models
    36707 
    36708 > hide #32.2 models
    36709 
    36710 > hide #!32 models
    36711 
    36712 > show #32.1 models
    36713 
    36714 > show #32.2 models
    36715 
    36716 > hide #!32 models
    36717 
    36718 > show #!32 models
    36719 
    36720 > hide #!32 models
    36721 
    36722 > show #!32 models
    36723 
    36724 > hide #!32 models
    36725 
    36726 > hide #32.1 models
    36727 
    36728 > show #32.1 models
    36729 
    36730 > hide #!32 models
    36731 
    36732 > show #!32 models
    36733 
    36734 > hide #4 models
    36735 
    36736 > hide #8 models
    36737 
    36738 > ui mousemode right zoom
    36739 
    36740 > show #!31 models
    36741 
    36742 > show #!30 models
    36743 
    36744 > show #29 models
    36745 
    36746 > hide #29 models
    36747 
    36748 > show #!28 models
    36749 
    36750 > hide #!28 models
    36751 
    36752 > show #!27 models
    36753 
    36754 > show #27.1 models
    36755 
    36756 > show #27.2 models
    36757 
    36758 > show #!26 models
    36759 
    36760 > show #24 models
    36761 
    36762 > hide #!1 models
    36763 
    36764 > show #!1 models
    36765 
    36766 > hide #!1 models
    36767 
    36768 > show #!1 models
    36769 
    36770 > show #!25 models
    36771 
    36772 > show #25.1 models
    36773 
    36774 > show #!25.2 models
    36775 
    36776 > show #25.3 models
    36777 
    36778 > show #!25.4 models
    36779 
    36780 > show #25.5 models
    36781 
    36782 > show #!25.6 models
    36783 
    36784 > show #!25.7 models
    36785 
    36786 > show #25.8 models
    36787 
    36788 > show #25.9 models
    36789 
    36790 > show #25.10 models
    36791 
    36792 > show #25.11 models
    36793 
    36794 > hide #!1 models
    36795 
    36796 > hide #25.9 models
    36797 
    36798 > show #25.9 models
    36799 
    36800 > hide #25.10 models
    36801 
    36802 > show #25.10 models
    36803 
    36804 > hide #25.10 models
    36805 
    36806 > show #25.10 models
    36807 
    36808 > hide #25.10 models
    36809 
    36810 > hide #25.11 models
    36811 
    36812 > show #25.11 models
    36813 
    36814 > hide #25.11 models
    36815 
    36816 > show #25.11 models
    36817 
    36818 > hide #25.11 models
    36819 
    36820 > show #25.11 models
    36821 
    36822 > hide #!25.7 models
    36823 
    36824 > hide #!25.6 models
    36825 
    36826 > hide #25.3 models
    36827 
    36828 > show #25.3 models
    36829 
    36830 > hide #25.3 models
    36831 
    36832 > show #25.3 models
    36833 
    36834 > fitmap #25.3 inMap #1
    36835 
    36836 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    36837 postprocess_20231221.mrc (#1) using 3371 atoms 
    36838 average map value = 0.004368, steps = 44 
    36839 shifted from previous position = 0.00844 
    36840 rotated from previous position = 0.00913 degrees 
    36841 atoms outside contour = 1375, contour level = 0.0036964 
    36842  
    36843 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    36844 postprocess_20231221.mrc (#1) coordinates: 
    36845 Matrix rotation and translation 
    36846 -0.47525408 0.87647726 -0.07694909 158.53420343 
    36847 -0.87868101 -0.47730886 -0.00979377 369.87324190 
    36848 -0.04531250 0.06295917 0.99698691 112.96016999 
    36849 Axis 0.04140865 -0.01800653 -0.99898002 
    36850 Axis point 191.05150899 135.35845305 0.00000000 
    36851 Rotation angle (degrees) 118.54103318 
    36852 Shift along axis -112.94040061 
    36853  
    36854 
    36855 > fitmap #25.3 inMap #1
    36856 
    36857 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    36858 postprocess_20231221.mrc (#1) using 3371 atoms 
    36859 average map value = 0.004368, steps = 48 
    36860 shifted from previous position = 0.0471 
    36861 rotated from previous position = 0.0276 degrees 
    36862 atoms outside contour = 1374, contour level = 0.0036964 
    36863  
    36864 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    36865 postprocess_20231221.mrc (#1) coordinates: 
    36866 Matrix rotation and translation 
    36867 -0.47516672 0.87649025 -0.07733961 158.59310079 
    36868 -0.87873077 -0.47722253 -0.00953295 369.80611039 
    36869 -0.04526374 0.06343095 0.99695922 112.92634766 
    36870 Axis 0.04152685 -0.01825574 -0.99897059 
    36871 Axis point 191.06980499 135.28411630 0.00000000 
    36872 Rotation angle (degrees) 118.53627210 
    36873 Shift along axis -112.97531167 
    36874  
    36875 
    36876 > hide #25.3 models
    36877 
    36878 > hide #25.1 models
    36879 
    36880 > show #25.1 models
    36881 
    36882 > hide #25.1 models
    36883 
    36884 > show #25.1 models
    36885 
    36886 > hide #!25.2 models
    36887 
    36888 > show #!25.2 models
    36889 
    36890 > hide #!25.2 models
    36891 
    36892 > show #!25.2 models
    36893 
    36894 > hide #!25.2 models
    36895 
    36896 > hide #!25.4 models
    36897 
    36898 > show #!25.4 models
    36899 
    36900 > hide #!25.4 models
    36901 
    36902 > show #!25.4 models
    36903 
    36904 > show #!1 models
    36905 
    36906 > show #!9 models
    36907 
    36908 > hide #!9 models
    36909 
    36910 > show #!25.6 models
    36911 
    36912 > hide #!25.6 models
    36913 
    36914 > show #!25.7 models
    36915 
    36916 > show #!9 models
    36917 
    36918 > hide #25.1 models
    36919 
    36920 > show #25.1 models
    36921 
    36922 > hide #25.1 models
    36923 
    36924 > show #25.1 models
    36925 
    36926 > hide #!9 models
    36927 
    36928 > show #!9 models
    36929 
    36930 > hide #!25.7 models
    36931 
    36932 > show #!25.7 models
    36933 
    36934 > hide #25.9 models
    36935 
    36936 > show #25.9 models
    36937 
    36938 > show #25.10 models
    36939 
    36940 > hide #25.10 models
    36941 
    36942 > show #25.10 models
    36943 
    36944 > hide #25.10 models
    36945 
    36946 > hide #!26.1 models
    36947 
    36948 > show #!26.1 models
    36949 
    36950 > hide #!26.2 models
    36951 
    36952 > show #!26.2 models
    36953 
    36954 > hide #!26.2 models
    36955 
    36956 > show #!26.2 models
    36957 
    36958 > hide #!26.2 models
    36959 
    36960 > show #!26.2 models
    36961 
    36962 > hide #!9 models
    36963 
    36964 > show #!9 models
    36965 
    36966 > hide #!9 models
    36967 
    36968 > show #!9 models
    36969 
    36970 > show #!25.6 models
    36971 
    36972 > hide #!25.6 models
    36973 
    36974 > show #!25.6 models
    36975 
    36976 > hide #!25.6 models
    36977 
    36978 > show #!25.6 models
    36979 
    36980 > hide #!25.6 models
    36981 
    36982 > hide #!26.2 models
    36983 
    36984 > show #!26.2 models
    36985 
    36986 > hide #!26.2 models
    36987 
    36988 > show #!26.2 models
    36989 
    36990 > hide #!26.2 models
    36991 
    36992 > hide #26.3 models
    36993 
    36994 > show #26.3 models
    36995 
    36996 > hide #26.3 models
    36997 
    36998 > show #26.3 models
    36999 
    37000 > hide #26.3 models
    37001 
    37002 > hide #25.11 models
    37003 
    37004 > show #25.11 models
    37005 
    37006 > hide #25.11 models
    37007 
    37008 > show #25.11 models
    37009 
    37010 > hide #25.11 models
    37011 
    37012 > show #25.11 models
    37013 
    37014 > hide #25.8 models
    37015 
    37016 > show #25.8 models
    37017 
    37018 > show #!25.2 models
    37019 
    37020 > hide #!25.2 models
    37021 
    37022 > show #!25.2 models
    37023 
    37024 > hide #!25.2 models
    37025 
    37026 > show #!25.2 models
    37027 
    37028 > show #4 models
    37029 
    37030 > hide #4 models
    37031 
    37032 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    37033 > dataset/Chimera sessions/20240212_leaf_fitting_v10.cxs"
    37034 
    37035 ——— End of log from Thu Feb 15 12:14:52 2024 ———
    37036 
    37037 opened ChimeraX session 
    37038 
    37039 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    37040 > dataset/Structure files/relion_locres_filtered_20240325_GT.mrc"
    37041 
    37042 Opened relion_locres_filtered_20240325_GT.mrc as #33, grid size 292,292,292,
    37043 pixel 1.71, shown at level 0.00475, step 2, values float32 
    37044 
    37045 > hide #!33 models
    37046 
    37047 > show #!33 models
    37048 
    37049 > volume #33 step 1
    37050 
    37051 > select add #33
    37052 
    37053 2 models selected 
    37054 
    37055 > ui mousemode right "translate selected models"
    37056 
    37057 > view matrix models #33,1,0,0,72.57,0,1,0,86.032,0,0,1,68.458
    37058 
    37059 > view matrix models #33,1,0,0,30.335,0,1,0,73.477,0,0,1,74.235
    37060 
    37061 > volume #33 level 0.01231
    37062 
    37063 > view matrix models #33,1,0,0,71.154,0,1,0,73.217,0,0,1,71.076
    37064 
    37065 > view matrix models #33,1,0,0,72.64,0,1,0,67.127,0,0,1,85.835
    37066 
    37067 > view matrix models #33,1,0,0,78.575,0,1,0,62.017,0,0,1,83.222
    37068 
    37069 > volume #33 level 0.01173
    37070 
    37071 > ui tool show "Fit in Map"
    37072 
    37073 > fitmap #33 inMap #1
    37074 
    37075 Fit map relion_locres_filtered_20240325_GT.mrc in map postprocess_20231221.mrc
    37076 using 44037 points 
    37077 correlation = 0.6237, correlation about mean = 0.1262, overlap = 2.804 
    37078 steps = 92, shift = 12.9, angle = 6.6 degrees 
    37079  
    37080 Position of relion_locres_filtered_20240325_GT.mrc (#33) relative to
    37081 postprocess_20231221.mrc (#1) coordinates: 
    37082 Matrix rotation and translation 
    37083 0.99949388 -0.02731098 0.01631250 -37.00560756 
    37084 0.02888458 0.99398480 -0.10564043 -16.91209365 
    37085 -0.01332924 0.10605815 0.99427059 -54.83653713 
    37086 Axis 0.95779583 0.13410923 0.25424764 
    37087 Axis point 0.00000000 386.91878756 -116.54834210 
    37088 Rotation angle (degrees) 6.34491271 
    37089 Shift along axis -51.65394478 
    37090  
    37091 
    37092 > select subtract #33
    37093 
    37094 Nothing selected 
    37095 
    37096 > hide #!1 models
    37097 
    37098 > show #!1 models
    37099 
    37100 > hide #!1 models
    37101 
    37102 > select add #33
    37103 
    37104 2 models selected 
    37105 
    37106 > select subtract #33
    37107 
    37108 Nothing selected 
    37109 
    37110 > hide #!33 models
    37111 
    37112 > show #!33 models
    37113 
    37114 > show #!1 models
    37115 
    37116 > hide #!33 models
    37117 
    37118 > hide #!1 models
    37119 
    37120 > show #!33 models
    37121 
    37122 > select add #33
    37123 
    37124 2 models selected 
    37125 
    37126 > view matrix models
    37127 > #33,0.99957,-0.025838,0.01358,74.395,0.027189,0.99344,-0.1111,94.822,-0.01062,0.11142,0.99372,55.81
    37128 
    37129 > view matrix models
    37130 > #33,0.99957,-0.025838,0.01358,73.428,0.027189,0.99344,-0.1111,96.48,-0.01062,0.11142,0.99372,62.53
    37131 
    37132 > view matrix models
    37133 > #33,0.99957,-0.025838,0.01358,73.648,0.027189,0.99344,-0.1111,94.024,-0.01062,0.11142,0.99372,62.484
    37134 
    37135 > view matrix models
    37136 > #33,0.99957,-0.025838,0.01358,69.414,0.027189,0.99344,-0.1111,91.313,-0.01062,0.11142,0.99372,57.683
    37137 
    37138 > view matrix models
    37139 > #33,0.99957,-0.025838,0.01358,63.655,0.027189,0.99344,-0.1111,102,-0.01062,0.11142,0.99372,53.367
    37140 
    37141 > fitmap #33 inMap #1
    37142 
    37143 Fit map relion_locres_filtered_20240325_GT.mrc in map postprocess_20231221.mrc
    37144 using 44037 points 
    37145 correlation = 0.857, correlation about mean = 0.4514, overlap = 5.569 
    37146 steps = 76, shift = 3.2, angle = 5.89 degrees 
    37147  
    37148 Position of relion_locres_filtered_20240325_GT.mrc (#33) relative to
    37149 postprocess_20231221.mrc (#1) coordinates: 
    37150 Matrix rotation and translation 
    37151 0.99986659 -0.01403628 0.00835329 -48.07140361 
    37152 0.01407399 0.99989095 -0.00447277 -38.51251840 
    37153 -0.00828960 0.00458974 0.99995511 -34.90096404 
    37154 Axis 0.26732008 0.49092094 0.82917827 
    37155 Axis point 601.63878323 -2274.55915830 0.00000000 
    37156 Rotation angle (degrees) 0.97124921 
    37157 Shift along axis -60.69617408 
    37158  
    37159 
    37160 > select subtract #33
    37161 
    37162 Nothing selected 
    37163 
    37164 > volume #33 level 0.007732
    37165 
    37166 > color #33 #b2b2b2b3 models
    37167 
    37168 > hide #!9 models
    37169 
    37170 > show #!9 models
    37171 
    37172 > fitmap #9 inMap #33
    37173 
    37174 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240325_GT.mrc
    37175 (#33) using 6673 atoms 
    37176 average map value = 0.008961, steps = 52 
    37177 shifted from previous position = 0.988 
    37178 rotated from previous position = 0.57 degrees 
    37179 atoms outside contour = 4166, contour level = 0.0077316 
    37180  
    37181 Position of CopG_Q9QZE5 (#9) relative to
    37182 relion_locres_filtered_20240325_GT.mrc (#33) coordinates: 
    37183 Matrix rotation and translation 
    37184 0.49613377 -0.51960793 -0.69559965 274.31858527 
    37185 0.53785070 -0.44499499 0.71602799 319.09443722 
    37186 -0.68159218 -0.72937443 0.05869444 294.85363127 
    37187 Axis -0.80704633 -0.00782113 0.59043633 
    37188 Axis point -0.00000000 282.70437624 125.41603975 
    37189 Rotation angle (degrees) 116.42867423 
    37190 Shift along axis -49.79118899 
    37191  
    37192 
    37193 > fitmap #9 inMap #33
    37194 
    37195 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240325_GT.mrc
    37196 (#33) using 6673 atoms 
    37197 average map value = 0.008961, steps = 64 
    37198 shifted from previous position = 0.0124 
    37199 rotated from previous position = 0.00857 degrees 
    37200 atoms outside contour = 4169, contour level = 0.0077316 
    37201  
    37202 Position of CopG_Q9QZE5 (#9) relative to
    37203 relion_locres_filtered_20240325_GT.mrc (#33) coordinates: 
    37204 Matrix rotation and translation 
    37205 0.49623907 -0.51951431 -0.69559447 274.30741330 
    37206 0.53787534 -0.44494899 0.71603807 319.08787875 
    37207 -0.68149608 -0.72946917 0.05863287 294.85903889 
    37208 Axis -0.80708476 -0.00787170 0.59038312 
    37209 Axis point 0.00000000 282.70154029 125.40339295 
    37210 Rotation angle (degrees) 116.42580377 
    37211 Shift along axis -49.82129739 
    37212  
    37213 
    37214 > fitmap #9 inMap #33
    37215 
    37216 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240325_GT.mrc
    37217 (#33) using 6673 atoms 
    37218 average map value = 0.008961, steps = 80 
    37219 shifted from previous position = 0.00724 
    37220 rotated from previous position = 0.0138 degrees 
    37221 atoms outside contour = 4169, contour level = 0.0077316 
    37222  
    37223 Position of CopG_Q9QZE5 (#9) relative to
    37224 relion_locres_filtered_20240325_GT.mrc (#33) coordinates: 
    37225 Matrix rotation and translation 
    37226 0.49616295 -0.51945034 -0.69569653 274.30452132 
    37227 0.53781312 -0.44516526 0.71595037 319.08560977 
    37228 -0.68160060 -0.72938277 0.05849270 294.84858065 
    37229 Axis -0.80708445 -0.00787127 0.59038354 
    37230 Axis point -0.00000000 282.66374601 125.43104086 
    37231 Rotation angle (degrees) 116.43964221 
    37232 Shift along axis -49.82477444 
    37233  
    37234 
    37235 > hide #24 models
    37236 
    37237 > show #24 models
    37238 
    37239 > hide #24 models
    37240 
    37241 > show #24 models
    37242 
    37243 > fitmap #24 inMap #33
    37244 
    37245 Fit molecule 3kn1_Golph3_xtal.cif (#24) to map
    37246 relion_locres_filtered_20240325_GT.mrc (#33) using 1934 atoms 
    37247 average map value = 0.008805, steps = 48 
    37248 shifted from previous position = 0.97 
    37249 rotated from previous position = 1.19 degrees 
    37250 atoms outside contour = 905, contour level = 0.0077316 
    37251  
    37252 Position of 3kn1_Golph3_xtal.cif (#24) relative to
    37253 relion_locres_filtered_20240325_GT.mrc (#33) coordinates: 
    37254 Matrix rotation and translation 
    37255 0.23315837 0.94986433 -0.20831449 197.31839591 
    37256 0.00055264 -0.21434801 -0.97675720 258.17011954 
    37257 -0.97243862 0.22762399 -0.05050197 197.45063390 
    37258 Axis 0.70293409 0.44597915 -0.55406341 
    37259 Axis point 0.00000000 -45.05482516 254.37750939 
    37260 Rotation angle (degrees) 121.05400663 
    37261 Shift along axis 144.44014638 
    37262  
    37263 
    37264 > select add #24
    37265 
    37266 1934 atoms, 1950 bonds, 254 residues, 1 model selected 
    37267 
    37268 > view matrix models
    37269 > #24,0.22751,0.95373,-0.19658,261.64,0.013108,-0.20485,-0.9787,333.54,-0.97369,0.22008,-0.059107,273.86
    37270 
    37271 > ui mousemode right "rotate selected models"
    37272 
    37273 > view matrix models
    37274 > #24,0.20396,0.93399,-0.29337,260.27,-0.15499,-0.26508,-0.95169,335.09,-0.96663,0.23958,0.090695,276.18
    37275 
    37276 > ui mousemode right "translate selected models"
    37277 
    37278 > view matrix models
    37279 > #24,0.20396,0.93399,-0.29337,258.7,-0.15499,-0.26508,-0.95169,335.39,-0.96663,0.23958,0.090695,278.18
    37280 
    37281 > fitmap #24 inMap #33
    37282 
    37283 Fit molecule 3kn1_Golph3_xtal.cif (#24) to map
    37284 relion_locres_filtered_20240325_GT.mrc (#33) using 1934 atoms 
    37285 average map value = 0.008805, steps = 72 
    37286 shifted from previous position = 1.23 
    37287 rotated from previous position = 10.4 degrees 
    37288 atoms outside contour = 903, contour level = 0.0077316 
    37289  
    37290 Position of 3kn1_Golph3_xtal.cif (#24) relative to
    37291 relion_locres_filtered_20240325_GT.mrc (#33) coordinates: 
    37292 Matrix rotation and translation 
    37293 0.23306458 0.94996117 -0.20797758 197.32356452 
    37294 0.00057448 -0.21400168 -0.97683312 258.15005036 
    37295 -0.97246109 0.22754572 -0.05042194 197.45698254 
    37296 Axis 0.70285059 0.44613677 -0.55404244 
    37297 Axis point 0.00000000 -45.14027322 254.39519192 
    37298 Rotation angle (degrees) 121.04288590 
    37299 Shift along axis 144.45966411 
    37300  
    37301 
    37302 > fitmap #24 inMap #33
    37303 
    37304 Fit molecule 3kn1_Golph3_xtal.cif (#24) to map
    37305 relion_locres_filtered_20240325_GT.mrc (#33) using 1934 atoms 
    37306 average map value = 0.008805, steps = 44 
    37307 shifted from previous position = 0.0314 
    37308 rotated from previous position = 0.0236 degrees 
    37309 atoms outside contour = 902, contour level = 0.0077316 
    37310  
    37311 Position of 3kn1_Golph3_xtal.cif (#24) relative to
    37312 relion_locres_filtered_20240325_GT.mrc (#33) coordinates: 
    37313 Matrix rotation and translation 
    37314 0.23331409 0.94994298 -0.20778080 197.36153623 
    37315 0.00087375 -0.21388272 -0.97685895 258.14539493 
    37316 -0.97240103 0.22773341 -0.05073187 197.45390626 
    37317 Axis 0.70296074 0.44620738 -0.55384579 
    37318 Axis point 0.00000000 -45.15246279 254.33489264 
    37319 Rotation angle (degrees) 121.04092825 
    37320 Shift along axis 144.56477865 
    37321  
    37322 
    37323 > select subtract #24
    37324 
    37325 Nothing selected 
    37326 
    37327 > volume #33 level 0.008296
    37328 
    37329 > hide #32.2 models
    37330 
    37331 > show #32.2 models
    37332 
    37333 > hide #32.2 models
    37334 
    37335 > show #32.2 models
    37336 
    37337 > hide #32.2 models
    37338 
    37339 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    37340 > dataset/Structure files/relion_locres_filtered_20240326_GT.mrc"
    37341 
    37342 Opened relion_locres_filtered_20240326_GT.mrc as #34, grid size 292,292,292,
    37343 pixel 1.71, shown at level 0.00473, step 2, values float32 
    37344 
    37345 > color #34 silver models
    37346 
    37347 > color #34 #c0c0c0c3 models
    37348 
    37349 > color #34 #c0c0c0b0 models
    37350 
    37351 > color #34 #c0c0c0b6 models
    37352 
    37353 > color #34 #c0c0c0b5 models
    37354 
    37355 > volume #34 step 1
    37356 
    37357 > volume #34 level 0.006879
    37358 
    37359 > select add #34
    37360 
    37361 2 models selected 
    37362 
    37363 > view matrix models #34,1,0,0,76.713,0,1,0,44.244,0,0,1,90.944
    37364 
    37365 > view matrix models #34,1,0,0,68.467,0,1,0,67.193,0,0,1,95.122
    37366 
    37367 > view matrix models #34,1,0,0,61.165,0,1,0,76.648,0,0,1,88.225
    37368 
    37369 > view matrix models #34,1,0,0,60.385,0,1,0,81.766,0,0,1,79.991
    37370 
    37371 > fitmap #34 inMap #33
    37372 
    37373 Fit map relion_locres_filtered_20240326_GT.mrc in map
    37374 relion_locres_filtered_20240325_GT.mrc using 81080 points 
    37375 correlation = 0.4928, correlation about mean = 0.147, overlap = 7.58 
    37376 steps = 176, shift = 6.83, angle = 7.04 degrees 
    37377  
    37378 Position of relion_locres_filtered_20240326_GT.mrc (#34) relative to
    37379 relion_locres_filtered_20240325_GT.mrc (#33) coordinates: 
    37380 Matrix rotation and translation 
    37381 0.99429183 -0.08031793 0.07023384 6.18459749 
    37382 0.08142673 0.99659370 -0.01306464 -10.59006941 
    37383 -0.06894528 0.01870897 0.99744500 19.92687933 
    37384 Axis 0.14728054 0.64513834 0.74973660 
    37385 Axis point 203.43567918 46.00553043 0.00000000 
    37386 Rotation angle (degrees) 6.19240989 
    37387 Shift along axis 9.01872173 
    37388  
    37389 
    37390 > select subtract #34
    37391 
    37392 Nothing selected 
    37393 
    37394 > hide #!34 models
    37395 
    37396 > show #!34 models
    37397 
    37398 > hide #!34 models
    37399 
    37400 > show #!34 models
    37401 
    37402 > hide #!34 models
    37403 
    37404 > show #!34 models
    37405 
    37406 > select add #34
    37407 
    37408 2 models selected 
    37409 
    37410 > view matrix models
    37411 > #34,0.9928,-0.092454,0.076157,67.203,0.094382,0.99529,-0.02212,64.594,-0.073753,0.029149,0.99685,82.392
    37412 
    37413 > view matrix models
    37414 > #34,0.9928,-0.092454,0.076157,69.297,0.094382,0.99529,-0.02212,59.891,-0.073753,0.029149,0.99685,86.477
    37415 
    37416 > fitmap #34 inMap #33
    37417 
    37418 Fit map relion_locres_filtered_20240326_GT.mrc in map
    37419 relion_locres_filtered_20240325_GT.mrc using 81080 points 
    37420 correlation = 0.9993, correlation about mean = 0.999, overlap = 24.37 
    37421 steps = 88, shift = 2.2, angle = 6.19 degrees 
    37422  
    37423 Position of relion_locres_filtered_20240326_GT.mrc (#34) relative to
    37424 relion_locres_filtered_20240325_GT.mrc (#33) coordinates: 
    37425 Matrix rotation and translation 
    37426 1.00000000 -0.00007715 0.00001183 0.00492983 
    37427 0.00007715 1.00000000 -0.00005101 -0.01559630 
    37428 -0.00001183 0.00005101 1.00000000 -0.00690254 
    37429 Axis 0.54709301 0.12689970 0.82739694 
    37430 Axis point 193.95045006 99.30213635 0.00000000 
    37431 Rotation angle (degrees) 0.00534241 
    37432 Shift along axis -0.00499324 
    37433  
    37434 
    37435 > hide #!33 models
    37436 
    37437 > select subtract #34
    37438 
    37439 Nothing selected 
    37440 
    37441 > volume #34 level 0.007468
    37442 
    37443 > fitmap #24 inMap #34
    37444 
    37445 Fit molecule 3kn1_Golph3_xtal.cif (#24) to map
    37446 relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms 
    37447 average map value = 0.008451, steps = 44 
    37448 shifted from previous position = 0.0262 
    37449 rotated from previous position = 0.0727 degrees 
    37450 atoms outside contour = 894, contour level = 0.0074676 
    37451  
    37452 Position of 3kn1_Golph3_xtal.cif (#24) relative to
    37453 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37454 Matrix rotation and translation 
    37455 0.23425930 0.94987010 -0.20704919 197.40956475 
    37456 0.00070050 -0.21314028 -0.97702136 258.09351163 
    37457 -0.97217390 0.22873130 -0.05059548 197.38429803 
    37458 Axis 0.70318792 0.44621627 -0.55355018 
    37459 Axis point 0.00000000 -45.26642650 254.27476290 
    37460 Rotation angle (degrees) 120.97995955 
    37461 Shift along axis 144.71943025 
    37462  
    37463 
    37464 > fitmap #24 inMap #34
    37465 
    37466 Fit molecule 3kn1_Golph3_xtal.cif (#24) to map
    37467 relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms 
    37468 average map value = 0.008451, steps = 44 
    37469 shifted from previous position = 0.00229 
    37470 rotated from previous position = 0.0546 degrees 
    37471 atoms outside contour = 898, contour level = 0.0074676 
    37472  
    37473 Position of 3kn1_Golph3_xtal.cif (#24) relative to
    37474 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37475 Matrix rotation and translation 
    37476 0.23353126 0.95014780 -0.20659697 197.39334641 
    37477 0.00051751 -0.21259339 -0.97714061 258.06121856 
    37478 -0.97234916 0.22808596 -0.05013891 197.42485509 
    37479 Axis 0.70281335 0.44653916 -0.55376546 
    37480 Axis point 0.00000000 -45.44733566 254.39921330 
    37481 Rotation angle (degrees) 120.97075702 
    37482 Shift along axis 144.63805233 
    37483  
    37484 
    37485 > fitmap #9 inMap #34
    37486 
    37487 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc
    37488 (#34) using 6673 atoms 
    37489 average map value = 0.008518, steps = 48 
    37490 shifted from previous position = 0.0318 
    37491 rotated from previous position = 0.0523 degrees 
    37492 atoms outside contour = 4163, contour level = 0.0074676 
    37493  
    37494 Position of CopG_Q9QZE5 (#9) relative to
    37495 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37496 Matrix rotation and translation 
    37497 0.49550602 -0.51968681 -0.69598807 274.31952932 
    37498 0.53772290 -0.44574109 0.71565981 319.08931419 
    37499 -0.68214945 -0.72886247 0.05858011 294.80474301 
    37500 Axis -0.80688849 -0.00773005 0.59065321 
    37501 Axis point 0.00000000 282.58706202 125.53796346 
    37502 Rotation angle (degrees) 116.47629292 
    37503 Shift along axis -49.68447857 
    37504  
    37505 
    37506 > fitmap #9 inMap #34
    37507 
    37508 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc
    37509 (#34) using 6673 atoms 
    37510 average map value = 0.008518, steps = 104 
    37511 shifted from previous position = 0.00642 
    37512 rotated from previous position = 0.031 degrees 
    37513 atoms outside contour = 4165, contour level = 0.0074676 
    37514  
    37515 Position of CopG_Q9QZE5 (#9) relative to
    37516 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37517 Matrix rotation and translation 
    37518 0.49574574 -0.51972562 -0.69578835 274.32666522 
    37519 0.53787996 -0.44526973 0.71583519 319.08087152 
    37520 -0.68185138 -0.72912286 0.05880943 294.81961287 
    37521 Axis -0.80692092 -0.00778295 0.59060820 
    37522 Axis point 0.00000000 282.65484655 125.47384425 
    37523 Rotation angle (degrees) 116.44619964 
    37524 Shift along axis -49.72043419 
    37525  
    37526 
    37527 > show #8 models
    37528 
    37529 > fitmap #8 inMap #34
    37530 
    37531 Fit molecule CopD_Q5XJY5 (#8) to map relion_locres_filtered_20240326_GT.mrc
    37532 (#34) using 1462 atoms 
    37533 average map value = 0.00841, steps = 156 
    37534 shifted from previous position = 2.76 
    37535 rotated from previous position = 12.4 degrees 
    37536 atoms outside contour = 724, contour level = 0.0074676 
    37537  
    37538 Position of CopD_Q5XJY5 (#8) relative to
    37539 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37540 Matrix rotation and translation 
    37541 0.07140636 0.98850099 0.13329270 -99.10582965 
    37542 -0.91228156 0.01069242 0.40942402 162.87483596 
    37543 0.40329082 -0.15083595 0.90255473 445.96344647 
    37544 Axis -0.28013823 -0.13500304 -0.95041925 
    37545 Axis point -59.71258172 162.64687932 0.00000000 
    37546 Rotation angle (degrees) 90.43964897 
    37547 Shift along axis -418.07751033 
    37548  
    37549 
    37550 > hide #8 models
    37551 
    37552 > show #3 models
    37553 
    37554 > fitmap #3 inMap #34
    37555 
    37556 Fit molecule CopA_F8WHL2.pdb (#3) to map
    37557 relion_locres_filtered_20240326_GT.mrc (#34) using 9810 atoms 
    37558 average map value = 0.005549, steps = 72 
    37559 shifted from previous position = 2.84 
    37560 rotated from previous position = 1.34 degrees 
    37561 atoms outside contour = 6409, contour level = 0.0074676 
    37562  
    37563 Position of CopA_F8WHL2.pdb (#3) relative to
    37564 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37565 Matrix rotation and translation 
    37566 0.90931516 0.39284566 0.13717951 209.67745401 
    37567 -0.21905740 0.73223243 -0.64486395 282.20868279 
    37568 -0.35377929 0.55633438 0.75188580 275.94887322 
    37569 Axis 0.83725126 0.34220484 -0.42650460 
    37570 Axis point 0.00000000 -384.56632735 515.35761515 
    37571 Rotation angle (degrees) 45.83582590 
    37572 Shift along axis 154.43242544 
    37573  
    37574 
    37575 > fitmap #3 inMap #34
    37576 
    37577 Fit molecule CopA_F8WHL2.pdb (#3) to map
    37578 relion_locres_filtered_20240326_GT.mrc (#34) using 9810 atoms 
    37579 average map value = 0.005549, steps = 60 
    37580 shifted from previous position = 0.034 
    37581 rotated from previous position = 0.0195 degrees 
    37582 atoms outside contour = 6415, contour level = 0.0074676 
    37583  
    37584 Position of CopA_F8WHL2.pdb (#3) relative to
    37585 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37586 Matrix rotation and translation 
    37587 0.90917434 0.39314923 0.13724317 209.70451247 
    37588 -0.21925634 0.73215869 -0.64488007 282.20950559 
    37589 -0.35401788 0.55621698 0.75186036 275.96663282 
    37590 Axis 0.83704470 0.34235989 -0.42678552 
    37591 Axis point 0.00000000 -384.65716396 515.42335056 
    37592 Rotation angle (degrees) 45.84540952 
    37593 Shift along axis 154.37070138 
    37594  
    37595 
    37596 > hide #3 models
    37597 
    37598 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    37599 > dataset/Chimera sessions/20240326_leaf_fitting_v11.cxs"
    37600 
    37601 > show #4 models
    37602 
    37603 > fitmap #4 inMap #34
    37604 
    37605 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    37606 relion_locres_filtered_20240326_GT.mrc (#34) using 7501 atoms 
    37607 average map value = 0.007457, steps = 148 
    37608 shifted from previous position = 2.51 
    37609 rotated from previous position = 2.87 degrees 
    37610 atoms outside contour = 4420, contour level = 0.0074676 
    37611  
    37612 Position of CopB_Q9JIF7.pdb (#4) relative to
    37613 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37614 Matrix rotation and translation 
    37615 -0.01680119 -0.69766311 0.71622895 219.87649830 
    37616 -0.07060979 0.71536949 0.69516958 243.07737626 
    37617 -0.99736251 -0.03889310 -0.06128091 272.76153712 
    37618 Axis -0.37322028 0.87124316 0.31881340 
    37619 Axis point 259.30872006 0.00000000 -51.77031004 
    37620 Rotation angle (degrees) 100.44877054 
    37621 Shift along axis 216.67716450 
    37622  
    37623 
    37624 > hide #4 models
    37625 
    37626 > show #5 models
    37627 
    37628 > fitmap #5 inMap #34
    37629 
    37630 Fit molecule hArf1_P84078 (#5) to map relion_locres_filtered_20240326_GT.mrc
    37631 (#34) using 1457 atoms 
    37632 average map value = 0.007776, steps = 60 
    37633 shifted from previous position = 3.87 
    37634 rotated from previous position = 6.73 degrees 
    37635 atoms outside contour = 819, contour level = 0.0074676 
    37636  
    37637 Position of hArf1_P84078 (#5) relative to
    37638 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37639 Matrix rotation and translation 
    37640 0.04242972 -0.02831736 0.99869807 172.65394789 
    37641 -0.66600925 -0.74590924 0.00714571 238.26333147 
    37642 0.74473578 -0.66544535 -0.05050834 212.55575199 
    37643 Axis -0.69988454 0.26426798 -0.66356919 
    37644 Axis point 0.00000000 166.46081014 -28.75809037 
    37645 Rotation angle (degrees) 151.28184306 
    37646 Shift along axis -198.91790665 
    37647  
    37648 
    37649 > hide #5 models
    37650 
    37651 > show #5 models
    37652 
    37653 > hide #!26.1 models
    37654 
    37655 > show #!26.1 models
    37656 
    37657 > hide #5 models
    37658 
    37659 > show #5 models
    37660 
    37661 > hide #5 models
    37662 
    37663 > hide #!26.1 models
    37664 
    37665 > show #!26.1 models
    37666 
    37667 > hide #25.5 models
    37668 
    37669 > show #5 models
    37670 
    37671 > show #6 models
    37672 
    37673 > hide #!26.1 models
    37674 
    37675 > fitmap #6 inMap #34
    37676 
    37677 Fit molecule hArf1_P84078 (#6) to map relion_locres_filtered_20240326_GT.mrc
    37678 (#34) using 1457 atoms 
    37679 average map value = 0.01, steps = 72 
    37680 shifted from previous position = 0.73 
    37681 rotated from previous position = 2.1 degrees 
    37682 atoms outside contour = 626, contour level = 0.0074676 
    37683  
    37684 Position of hArf1_P84078 (#6) relative to
    37685 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37686 Matrix rotation and translation 
    37687 -0.84132215 -0.49459873 0.21805759 292.95471261 
    37688 -0.49051987 0.52911808 -0.69240472 231.43475503 
    37689 0.22708428 -0.68949701 -0.68776928 256.78767603 
    37690 Axis 0.28166080 -0.87438969 0.39510742 
    37691 Axis point 183.36285933 0.00000000 181.12263792 
    37692 Rotation angle (degrees) 179.70425446 
    37693 Shift along axis -18.39158846 
    37694  
    37695 
    37696 > hide #6 models
    37697 
    37698 > hide #5 models
    37699 
    37700 > show #7 models
    37701 
    37702 > fitmap #7 inMap #34
    37703 
    37704 Fit molecule CopBprime_O55029.pdb (#7) to map
    37705 relion_locres_filtered_20240326_GT.mrc (#34) using 7214 atoms 
    37706 average map value = 0.008399, steps = 84 
    37707 shifted from previous position = 0.843 
    37708 rotated from previous position = 2.57 degrees 
    37709 atoms outside contour = 3562, contour level = 0.0074676 
    37710  
    37711 Position of CopBprime_O55029.pdb (#7) relative to
    37712 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37713 Matrix rotation and translation 
    37714 -0.13431586 -0.22738621 -0.96449715 237.14149448 
    37715 -0.00061001 -0.97329764 0.22954593 213.64544034 
    37716 -0.99093838 0.03142001 0.13059060 275.37738819 
    37717 Axis -0.65541234 0.08746916 0.75018918 
    37718 Axis point 228.35039389 105.10157043 0.00000000 
    37719 Rotation angle (degrees) 171.30665467 
    37720 Shift along axis 69.84706251 
    37721  
    37722 
    37723 > fitmap #7 inMap #34
    37724 
    37725 Fit molecule CopBprime_O55029.pdb (#7) to map
    37726 relion_locres_filtered_20240326_GT.mrc (#34) using 7214 atoms 
    37727 average map value = 0.008399, steps = 44 
    37728 shifted from previous position = 0.0128 
    37729 rotated from previous position = 0.0342 degrees 
    37730 atoms outside contour = 3562, contour level = 0.0074676 
    37731  
    37732 Position of CopBprime_O55029.pdb (#7) relative to
    37733 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37734 Matrix rotation and translation 
    37735 -0.13390870 -0.22779018 -0.96445844 237.15410914 
    37736 -0.00039761 -0.97321119 0.22991264 213.64052796 
    37737 -0.99099359 0.03117078 0.13023088 275.38236789 
    37738 Axis -0.65555388 0.08752670 0.75005879 
    37739 Axis point 228.37335345 105.12898072 0.00000000 
    37740 Rotation angle (degrees) 171.28131559 
    37741 Shift along axis 69.78491755 
    37742  
    37743 
    37744 > fitmap #7 inMap #34
    37745 
    37746 Fit molecule CopBprime_O55029.pdb (#7) to map
    37747 relion_locres_filtered_20240326_GT.mrc (#34) using 7214 atoms 
    37748 average map value = 0.008399, steps = 44 
    37749 shifted from previous position = 0.0077 
    37750 rotated from previous position = 0.0068 degrees 
    37751 atoms outside contour = 3563, contour level = 0.0074676 
    37752  
    37753 Position of CopBprime_O55029.pdb (#7) relative to
    37754 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37755 Matrix rotation and translation 
    37756 -0.13397701 -0.22770446 -0.96446920 237.14731874 
    37757 -0.00036520 -0.97323212 0.22982406 213.64279778 
    37758 -0.99098437 0.03114337 0.13030757 275.38493157 
    37759 Axis -0.65552905 0.08748443 0.75008542 
    37760 Axis point 228.36528533 105.13378512 0.00000000 
    37761 Rotation angle (degrees) 171.28368734 
    37762 Shift along axis 69.79568160 
    37763  
    37764 
    37765 > hide #7 models
    37766 
    37767 > show #8 models
    37768 
    37769 > fitmap #8 inMap #34
    37770 
    37771 Fit molecule CopD_Q5XJY5 (#8) to map relion_locres_filtered_20240326_GT.mrc
    37772 (#34) using 1462 atoms 
    37773 average map value = 0.00841, steps = 28 
    37774 shifted from previous position = 0.0383 
    37775 rotated from previous position = 0.0735 degrees 
    37776 atoms outside contour = 722, contour level = 0.0074676 
    37777  
    37778 Position of CopD_Q5XJY5 (#8) relative to
    37779 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37780 Matrix rotation and translation 
    37781 0.07016472 0.98859876 0.13322696 -99.31004014 
    37782 -0.91248006 0.00964302 0.40900753 163.18466590 
    37783 0.40305963 -0.15026484 0.90275325 445.78508052 
    37784 Axis -0.27964682 -0.13492146 -0.95057554 
    37785 Axis point -59.54465786 162.68993060 0.00000000 
    37786 Rotation angle (degrees) 90.49959742 
    37787 Shift along axis -417.99777082 
    37788  
    37789 
    37790 > fitmap #8 inMap #34
    37791 
    37792 Fit molecule CopD_Q5XJY5 (#8) to map relion_locres_filtered_20240326_GT.mrc
    37793 (#34) using 1462 atoms 
    37794 average map value = 0.00841, steps = 28 
    37795 shifted from previous position = 0.0322 
    37796 rotated from previous position = 0.0518 degrees 
    37797 atoms outside contour = 723, contour level = 0.0074676 
    37798  
    37799 Position of CopD_Q5XJY5 (#8) relative to
    37800 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37801 Matrix rotation and translation 
    37802 0.07106380 0.98853589 0.13321692 -99.16933695 
    37803 -0.91244747 0.01046829 0.40905994 162.89308632 
    37804 0.40297587 -0.15062280 0.90273098 445.87345823 
    37805 Axis -0.27985003 -0.13488365 -0.95052110 
    37806 Axis point -59.63440143 162.62315862 0.00000000 
    37807 Rotation angle (degrees) 90.45083426 
    37808 Shift along axis -418.03120194 
    37809  
    37810 
    37811 > hide #8 models
    37812 
    37813 > show #10 models
    37814 
    37815 > fitmap #10 inMap #34
    37816 
    37817 Fit molecule CopZ1_P61924.pdb (#10) to map
    37818 relion_locres_filtered_20240326_GT.mrc (#34) using 1420 atoms 
    37819 average map value = 0.009234, steps = 48 
    37820 shifted from previous position = 1.12 
    37821 rotated from previous position = 1.79 degrees 
    37822 atoms outside contour = 675, contour level = 0.0074676 
    37823  
    37824 Position of CopZ1_P61924.pdb (#10) relative to
    37825 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37826 Matrix rotation and translation 
    37827 0.16424997 -0.94520201 -0.28216152 280.94831575 
    37828 -0.37364491 0.20511456 -0.90460904 278.13209898 
    37829 0.91291371 0.25401022 -0.31947985 253.91031297 
    37830 Axis 0.65834031 -0.67905499 0.32476508 
    37831 Axis point 174.97275092 0.00000000 294.15667076 
    37832 Rotation angle (degrees) 118.36310421 
    37833 Shift along axis 78.55381362 
    37834  
    37835 
    37836 > fitmap #10 inMap #34
    37837 
    37838 Fit molecule CopZ1_P61924.pdb (#10) to map
    37839 relion_locres_filtered_20240326_GT.mrc (#34) using 1420 atoms 
    37840 average map value = 0.009234, steps = 40 
    37841 shifted from previous position = 0.0387 
    37842 rotated from previous position = 0.022 degrees 
    37843 atoms outside contour = 674, contour level = 0.0074676 
    37844  
    37845 Position of CopZ1_P61924.pdb (#10) relative to
    37846 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37847 Matrix rotation and translation 
    37848 0.16427782 -0.94520359 -0.28214001 280.95341777 
    37849 -0.37329087 0.20518314 -0.90473964 278.15427915 
    37850 0.91305352 0.25394894 -0.31912883 253.87919273 
    37851 Axis 0.65828937 -0.67902904 0.32492256 
    37852 Axis point 174.96864287 0.00000000 294.21495040 
    37853 Rotation angle (degrees) 118.34853786 
    37854 Shift along axis 78.56489358 
    37855  
    37856 
    37857 > hide #10 models
    37858 
    37859 > show #11 models
    37860 
    37861 > fitmap #11 inMap #34
    37862 
    37863 Fit molecule Golph3_ Q9CRA5.pdb (#11) to map
    37864 relion_locres_filtered_20240326_GT.mrc (#34) using 2367 atoms 
    37865 average map value = 0.007663, steps = 48 
    37866 shifted from previous position = 0.709 
    37867 rotated from previous position = 2.1 degrees 
    37868 atoms outside contour = 1240, contour level = 0.0074676 
    37869  
    37870 Position of Golph3_ Q9CRA5.pdb (#11) relative to
    37871 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37872 Matrix rotation and translation 
    37873 0.65421830 -0.23794002 0.71790178 247.65193454 
    37874 -0.70329335 -0.54051642 0.46175800 269.95611284 
    37875 0.27816699 -0.80698609 -0.52095737 226.95063267 
    37876 Axis -0.89276656 0.30942450 -0.32745129 
    37877 Axis point 0.00000000 214.70262422 -10.31695525 
    37878 Rotation angle (degrees) 134.71878815 
    37879 Shift along axis -211.87960680 
    37880  
    37881 
    37882 > fitmap #11 inMap #34
    37883 
    37884 Fit molecule Golph3_ Q9CRA5.pdb (#11) to map
    37885 relion_locres_filtered_20240326_GT.mrc (#34) using 2367 atoms 
    37886 average map value = 0.007663, steps = 28 
    37887 shifted from previous position = 0.0299 
    37888 rotated from previous position = 0.0482 degrees 
    37889 atoms outside contour = 1239, contour level = 0.0074676 
    37890  
    37891 Position of Golph3_ Q9CRA5.pdb (#11) relative to
    37892 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37893 Matrix rotation and translation 
    37894 0.65431825 -0.23860616 0.71758953 247.67989817 
    37895 -0.70349800 -0.54016367 0.46185903 269.95704958 
    37896 0.27741339 -0.80702559 -0.52129790 226.95194987 
    37897 Axis -0.89279567 0.30971086 -0.32710100 
    37898 Axis point 0.00000000 214.77630651 -10.28288940 
    37899 Rotation angle (degrees) 134.71426631 
    37900 Shift along axis -211.75512060 
    37901  
    37902 
    37903 > hide #11 models
    37904 
    37905 > show #12 models
    37906 
    37907 > fitmap #12 inMap #34
    37908 
    37909 Fit molecule CopZ2_Q9CTG7.pdb (#12) to map
    37910 relion_locres_filtered_20240326_GT.mrc (#34) using 1463 atoms 
    37911 average map value = 0.009106, steps = 44 
    37912 shifted from previous position = 1.02 
    37913 rotated from previous position = 1.24 degrees 
    37914 atoms outside contour = 738, contour level = 0.0074676 
    37915  
    37916 Position of CopZ2_Q9CTG7.pdb (#12) relative to
    37917 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37918 Matrix rotation and translation 
    37919 -0.82091914 0.29004883 -0.49189784 280.03421097 
    37920 0.42279215 0.88773522 -0.18213459 278.62685215 
    37921 0.38384711 -0.35748831 -0.85138918 253.04319994 
    37922 Axis -0.19420328 -0.96988268 0.14701250 
    37923 Axis point 75.80135238 0.00000000 175.21622813 
    37924 Rotation angle (degrees) 153.16199409 
    37925 Shift along axis -287.41840673 
    37926  
    37927 
    37928 > fitmap #12 inMap #34
    37929 
    37930 Fit molecule CopZ2_Q9CTG7.pdb (#12) to map
    37931 relion_locres_filtered_20240326_GT.mrc (#34) using 1463 atoms 
    37932 average map value = 0.009106, steps = 40 
    37933 shifted from previous position = 0.0192 
    37934 rotated from previous position = 0.0109 degrees 
    37935 atoms outside contour = 741, contour level = 0.0074676 
    37936  
    37937 Position of CopZ2_Q9CTG7.pdb (#12) relative to
    37938 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37939 Matrix rotation and translation 
    37940 -0.82083085 0.29001682 -0.49206402 280.05037052 
    37941 0.42282521 0.88772302 -0.18211730 278.62125297 
    37942 0.38399948 -0.35754456 -0.85129685 253.05327012 
    37943 Axis -0.19421314 -0.96987800 0.14703037 
    37944 Axis point 75.79151350 0.00000000 175.23683625 
    37945 Rotation angle (degrees) 153.15130828 
    37946 Shift along axis -287.41157022 
    37947  
    37948 
    37949 > hide #12 models
    37950 
    37951 > show #!13 models
    37952 
    37953 > hide #!13 models
    37954 
    37955 > show #!14 models
    37956 
    37957 > hide #!14 models
    37958 
    37959 > hide #24 models
    37960 
    37961 > show #24 models
    37962 
    37963 > fitmap #24 inMap #34
    37964 
    37965 Fit molecule 3kn1_Golph3_xtal.cif (#24) to map
    37966 relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms 
    37967 average map value = 0.008452, steps = 48 
    37968 shifted from previous position = 0.0431 
    37969 rotated from previous position = 0.0627 degrees 
    37970 atoms outside contour = 895, contour level = 0.0074676 
    37971  
    37972 Position of 3kn1_Golph3_xtal.cif (#24) relative to
    37973 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    37974 Matrix rotation and translation 
    37975 0.23405376 0.94982303 -0.20749712 197.35570778 
    37976 0.00020131 -0.21347264 -0.97694902 258.10756002 
    37977 -0.97222364 0.22861682 -0.05015528 197.38522791 
    37978 Axis 0.70310302 0.44599930 -0.55383279 
    37979 Axis point 0.00000000 -45.20651034 254.35443028 
    37980 Rotation angle (degrees) 120.98322448 
    37981 Shift along axis 144.55877326 
    37982  
    37983 
    37984 > hide #25.1 models
    37985 
    37986 > show #25.1 models
    37987 
    37988 > hide #25.1 models
    37989 
    37990 > show #25.1 models
    37991 
    37992 > hide #25.1 models
    37993 
    37994 > show #25.1 models
    37995 
    37996 > hide #27.2 models
    37997 
    37998 > hide #!30 models
    37999 
    38000 > hide #25.1 models
    38001 
    38002 > show #25.1 models
    38003 
    38004 > fitmap #25.1 inMap #34
    38005 
    38006 Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map
    38007 relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms 
    38008 average map value = 0.01111, steps = 60 
    38009 shifted from previous position = 0.904 
    38010 rotated from previous position = 1.72 degrees 
    38011 atoms outside contour = 1163, contour level = 0.0074676 
    38012  
    38013 Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to
    38014 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38015 Matrix rotation and translation 
    38016 -0.50807931 0.84617772 -0.16074411 226.49375297 
    38017 -0.85922710 -0.51091764 0.02630506 400.52629656 
    38018 -0.05986824 0.15148075 0.98664551 146.92791984 
    38019 Axis 0.07307543 -0.05888961 -0.99558626 
    38020 Axis point 229.70717814 128.48284437 0.00000000 
    38021 Rotation angle (degrees) 121.07607407 
    38022 Shift along axis -153.31512685 
    38023  
    38024 
    38025 > fitmap #25.1 inMap #34
    38026 
    38027 Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map
    38028 relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms 
    38029 average map value = 0.01111, steps = 44 
    38030 shifted from previous position = 0.0149 
    38031 rotated from previous position = 0.0266 degrees 
    38032 atoms outside contour = 1160, contour level = 0.0074676 
    38033  
    38034 Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to
    38035 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38036 Matrix rotation and translation 
    38037 -0.50771421 0.84636989 -0.16088590 226.45621049 
    38038 -0.85944782 -0.51054152 0.02639693 400.53106900 
    38039 -0.05979736 0.15167513 0.98661994 146.90491855 
    38040 Axis 0.07311688 -0.05899892 -0.99557674 
    38041 Axis point 229.74228973 128.45284652 0.00000000 
    38042 Rotation angle (degrees) 121.05213979 
    38043 Shift along axis -153.32824889 
    38044  
    38045 
    38046 > fitmap #25.1 inMap #34
    38047 
    38048 Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map
    38049 relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms 
    38050 average map value = 0.01111, steps = 44 
    38051 shifted from previous position = 0.0327 
    38052 rotated from previous position = 0.0357 degrees 
    38053 atoms outside contour = 1163, contour level = 0.0074676 
    38054  
    38055 Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to
    38056 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38057 Matrix rotation and translation 
    38058 -0.50793455 0.84614433 -0.16137614 226.56209347 
    38059 -0.85928642 -0.51082194 0.02622549 400.56407963 
    38060 -0.06024392 0.15198915 0.98654445 146.96573947 
    38061 Axis 0.07341508 -0.05903637 -0.99555258 
    38062 Axis point 229.78643902 128.44653831 0.00000000 
    38063 Rotation angle (degrees) 121.07141163 
    38064 Shift along axis -153.32689327 
    38065  
    38066 
    38067 > fitmap #25.1 inMap #34
    38068 
    38069 Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map
    38070 relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms 
    38071 average map value = 0.01111, steps = 60 
    38072 shifted from previous position = 0.0217 
    38073 rotated from previous position = 0.0104 degrees 
    38074 atoms outside contour = 1163, contour level = 0.0074676 
    38075  
    38076 Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to
    38077 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38078 Matrix rotation and translation 
    38079 -0.50794397 0.84616252 -0.16125102 226.54158397 
    38080 -0.85929324 -0.51080380 0.02635510 400.52948403 
    38081 -0.06006694 0.15194883 0.98656145 146.95116687 
    38082 Axis 0.07331522 -0.05906611 -0.99555817 
    38083 Axis point 229.75811826 128.43643924 0.00000000 
    38084 Rotation angle (degrees) 121.07055136 
    38085 Shift along axis -153.34720978 
    38086  
    38087 
    38088 > fitmap #25.1 inMap #34
    38089 
    38090 Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map
    38091 relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms 
    38092 average map value = 0.01111, steps = 48 
    38093 shifted from previous position = 0.022 
    38094 rotated from previous position = 0.00674 degrees 
    38095 atoms outside contour = 1160, contour level = 0.0074676 
    38096  
    38097 Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to
    38098 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38099 Matrix rotation and translation 
    38100 -0.50788552 0.84621218 -0.16117454 226.52173670 
    38101 -0.85933336 -0.51073460 0.02638836 400.51304405 
    38102 -0.05998726 0.15190492 0.98657306 146.92661256 
    38103 Axis 0.07326658 -0.05906508 -0.99556181 
    38104 Axis point 229.74941295 128.43089793 0.00000000 
    38105 Rotation angle (degrees) 121.06589357 
    38106 Shift along axis -153.33438642 
    38107  
    38108 
    38109 > fitmap #25.1 inMap #34
    38110 
    38111 Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map
    38112 relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms 
    38113 average map value = 0.01111, steps = 44 
    38114 shifted from previous position = 0.0223 
    38115 rotated from previous position = 0.0218 degrees 
    38116 atoms outside contour = 1160, contour level = 0.0074676 
    38117  
    38118 Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to
    38119 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38120 Matrix rotation and translation 
    38121 -0.50772527 0.84636665 -0.16086804 226.45629918 
    38122 -0.85944082 -0.51055412 0.02638089 400.53445307 
    38123 -0.05980394 0.15165080 0.98662329 146.90614497 
    38124 Axis 0.07311256 -0.05898508 -0.99557788 
    38125 Axis point 229.74200269 128.45676344 0.00000000 
    38126 Rotation angle (degrees) 121.05281916 
    38127 Shift along axis -153.32526360 
    38128  
    38129 
    38130 > hide #25.1 models
    38131 
    38132 > show #25.1 models
    38133 
    38134 > hide #25.1 models
    38135 
    38136 > show #25.1 models
    38137 
    38138 > hide #25.1 models
    38139 
    38140 > show #25.1 models
    38141 
    38142 > show #27.2 models
    38143 
    38144 > fitmap #27.2 inMap #34
    38145 
    38146 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    38147 relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms 
    38148 average map value = 0.009081, steps = 72 
    38149 shifted from previous position = 2.95 
    38150 rotated from previous position = 3.29 degrees 
    38151 atoms outside contour = 722, contour level = 0.0074676 
    38152  
    38153 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    38154 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38155 Matrix rotation and translation 
    38156 0.98952834 0.01496424 -0.14356094 -45.88490327 
    38157 0.02378468 0.96410971 0.26443667 -113.51694283 
    38158 0.14236559 -0.26508213 0.95365796 -31.11838703 
    38159 Axis -0.87982037 -0.47508035 0.01465558 
    38160 Axis point 0.00000000 -164.25502779 238.38714184 
    38161 Rotation angle (degrees) 17.51313227 
    38162 Shift along axis 93.84408321 
    38163  
    38164 
    38165 > fitmap #27.2 inMap #34
    38166 
    38167 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    38168 relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms 
    38169 average map value = 0.009081, steps = 44 
    38170 shifted from previous position = 0.00588 
    38171 rotated from previous position = 0.0147 degrees 
    38172 atoms outside contour = 722, contour level = 0.0074676 
    38173  
    38174 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    38175 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38176 Matrix rotation and translation 
    38177 0.98951164 0.01477622 -0.14369546 -45.82658996 
    38178 0.02398369 0.96414263 0.26429865 -113.49712905 
    38179 0.14244826 -0.26497294 0.95367596 -31.13698708 
    38180 Axis -0.87956809 -0.47552691 0.01530140 
    38181 Axis point 0.00000000 -164.59272813 238.32826730 
    38182 Rotation angle (degrees) 17.50987486 
    38183 Shift along axis 93.80210585 
    38184  
    38185 
    38186 > fitmap #27.2 inMap #34
    38187 
    38188 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    38189 relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms 
    38190 average map value = 0.009081, steps = 48 
    38191 shifted from previous position = 0.0111 
    38192 rotated from previous position = 0.0591 degrees 
    38193 atoms outside contour = 722, contour level = 0.0074676 
    38194  
    38195 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    38196 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38197 Matrix rotation and translation 
    38198 0.98953649 0.01421292 -0.14358105 -45.76249307 
    38199 0.02436872 0.96437677 0.26340768 -113.35993219 
    38200 0.14221003 -0.26415040 0.95393966 -31.30508543 
    38201 Axis -0.87914478 -0.47625417 0.01692405 
    38202 Axis point 0.00000000 -166.10252953 238.49904609 
    38203 Rotation angle (degrees) 17.46003583 
    38204 Shift along axis 93.69018859 
    38205  
    38206 
    38207 > hide #27.2 models
    38208 
    38209 > show #27.2 models
    38210 
    38211 > hide #27.2 models
    38212 
    38213 > show #27.2 models
    38214 
    38215 > hide #27.2 models
    38216 
    38217 > show #27.2 models
    38218 
    38219 > hide #27.2 models
    38220 
    38221 > show #!30 models
    38222 
    38223 > hide #25.1 models
    38224 
    38225 > fitmap #30 inMap #34
    38226 
    38227 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    38228 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    38229 average map value = 0.009304, steps = 64 
    38230 shifted from previous position = 1.57 
    38231 rotated from previous position = 1.77 degrees 
    38232 atoms outside contour = 1189, contour level = 0.0074676 
    38233  
    38234 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    38235 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38236 Matrix rotation and translation 
    38237 0.79092025 -0.51961367 0.32318231 236.68441941 
    38238 -0.42094200 -0.07867712 0.90366905 306.91695679 
    38239 -0.44413174 -0.85077115 -0.28095454 224.05164929 
    38240 Axis -0.91499202 0.40017678 0.05146017 
    38241 Axis point 0.00000000 298.33353283 -19.93137691 
    38242 Rotation angle (degrees) 106.52033984 
    38243 Shift along axis -82.21357901 
    38244  
    38245 
    38246 > fitmap #30 inMap #34
    38247 
    38248 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    38249 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    38250 average map value = 0.009304, steps = 36 
    38251 shifted from previous position = 0.0111 
    38252 rotated from previous position = 0.0267 degrees 
    38253 atoms outside contour = 1193, contour level = 0.0074676 
    38254  
    38255 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    38256 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38257 Matrix rotation and translation 
    38258 0.79079468 -0.51987556 0.32306840 236.68351133 
    38259 -0.42076432 -0.07839699 0.90377614 306.91406724 
    38260 -0.44452354 -0.85063701 -0.28074101 224.04067556 
    38261 Axis -0.91492583 0.40029892 0.05168648 
    38262 Axis point 0.00000000 298.37775850 -19.93102356 
    38263 Rotation angle (degrees) 106.50934092 
    38264 Shift along axis -82.11061549 
    38265  
    38266 
    38267 > show #25.1 models
    38268 
    38269 > hide #!30 models
    38270 
    38271 > hide #!25.2 models
    38272 
    38273 > hide #32.1 models
    38274 
    38275 > show #!25.2 models
    38276 
    38277 > fitmap #25.2 inMap #34
    38278 
    38279 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    38280 relion_locres_filtered_20240326_GT.mrc (#34) using 3198 atoms 
    38281 average map value = 0.01621, steps = 112 
    38282 shifted from previous position = 1.7 
    38283 rotated from previous position = 0.599 degrees 
    38284 atoms outside contour = 578, contour level = 0.0074676 
    38285  
    38286 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    38287 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38288 Matrix rotation and translation 
    38289 -0.50709287 0.85735527 -0.08831055 217.30498081 
    38290 -0.86097460 -0.50861215 0.00603291 405.52318744 
    38291 -0.03974347 0.07909238 0.99607471 147.10970162 
    38292 Axis 0.04246242 -0.02822735 -0.99869923 
    38293 Axis point 226.26182545 136.88589997 0.00000000 
    38294 Rotation angle (degrees) 120.65151814 
    38295 Shift along axis -149.13789725 
    38296  
    38297 
    38298 > fitmap #25.2 inMap #34
    38299 
    38300 Fit molecule 5nzr_COPI_coat_leaf_2017.cif B (#25.2) to map
    38301 relion_locres_filtered_20240326_GT.mrc (#34) using 3198 atoms 
    38302 average map value = 0.01621, steps = 64 
    38303 shifted from previous position = 0.0226 
    38304 rotated from previous position = 0.0293 degrees 
    38305 atoms outside contour = 579, contour level = 0.0074676 
    38306  
    38307 Position of 5nzr_COPI_coat_leaf_2017.cif B (#25.2) relative to
    38308 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38309 Matrix rotation and translation 
    38310 -0.50737829 0.85719270 -0.08824927 217.37021695 
    38311 -0.86079235 -0.50892465 0.00567549 405.57999771 
    38312 -0.04004724 0.07884392 0.99608225 147.17400146 
    38313 Axis 0.04253439 -0.02802089 -0.99870199 
    38314 Axis point 226.28039377 136.93300981 0.00000000 
    38315 Rotation angle (degrees) 120.67118058 
    38316 Shift along axis -149.10196826 
    38317  
    38318 
    38319 > hide #!25.2 models
    38320 
    38321 > show #32.1 models
    38322 
    38323 > fitmap #32.1 inMap #34
    38324 
    38325 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map
    38326 relion_locres_filtered_20240326_GT.mrc (#34) using 2991 atoms 
    38327 average map value = 0.01065, steps = 112 
    38328 shifted from previous position = 1.18 
    38329 rotated from previous position = 1.16 degrees 
    38330 atoms outside contour = 1336, contour level = 0.0074676 
    38331  
    38332 Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to
    38333 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38334 Matrix rotation and translation 
    38335 0.99553808 -0.07926465 0.05119619 253.51290154 
    38336 0.06867539 0.98071735 0.18296767 192.95843243 
    38337 -0.06471186 -0.17863536 0.98178500 287.89564980 
    38338 Axis -0.88731214 0.28441859 0.36301961 
    38339 Axis point 0.00000000 1842.97375796 -962.27558149 
    38340 Rotation angle (degrees) 11.75710465 
    38341 Shift along axis -65.55234322 
    38342  
    38343 
    38344 > fitmap #32.1 inMap #34
    38345 
    38346 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map
    38347 relion_locres_filtered_20240326_GT.mrc (#34) using 2991 atoms 
    38348 average map value = 0.01065, steps = 64 
    38349 shifted from previous position = 0.0181 
    38350 rotated from previous position = 0.024 degrees 
    38351 atoms outside contour = 1339, contour level = 0.0074676 
    38352  
    38353 Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to
    38354 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38355 Matrix rotation and translation 
    38356 0.99554242 -0.07909544 0.05137323 253.49477224 
    38357 0.06845565 0.98067246 0.18329032 192.96194874 
    38358 -0.06487774 -0.17895650 0.98171556 287.89837941 
    38359 Axis -0.88774154 0.28489088 0.36159665 
    38360 Axis point 0.00000000 1840.25528801 -961.24127973 
    38361 Rotation angle (degrees) 11.77255744 
    38362 Shift along axis -65.96165180 
    38363  
    38364 
    38365 > fitmap #32.1 inMap #34
    38366 
    38367 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map
    38368 relion_locres_filtered_20240326_GT.mrc (#34) using 2991 atoms 
    38369 average map value = 0.01065, steps = 44 
    38370 shifted from previous position = 0.0378 
    38371 rotated from previous position = 0.0375 degrees 
    38372 atoms outside contour = 1338, contour level = 0.0074676 
    38373  
    38374 Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to
    38375 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38376 Matrix rotation and translation 
    38377 0.99552861 -0.07954903 0.05093861 253.51313438 
    38378 0.06899044 0.98066323 0.18313913 192.97734679 
    38379 -0.06452217 -0.17880596 0.98176643 287.91470617 
    38380 Axis -0.88729246 0.28304702 0.36413799 
    38381 Axis point 0.00000000 1841.49762982 -960.48331793 
    38382 Rotation angle (degrees) 11.76864994 
    38383 Shift along axis -65.47794715 
    38384  
    38385 
    38386 > hide #32.1 models
    38387 
    38388 > show #!25.2 models
    38389 
    38390 > hide #!25.2 models
    38391 
    38392 > show #4 models
    38393 
    38394 > fitmap #4 inMap #34
    38395 
    38396 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    38397 relion_locres_filtered_20240326_GT.mrc (#34) using 7501 atoms 
    38398 average map value = 0.007457, steps = 84 
    38399 shifted from previous position = 0.00986 
    38400 rotated from previous position = 0.0149 degrees 
    38401 atoms outside contour = 4418, contour level = 0.0074676 
    38402  
    38403 Position of CopB_Q9JIF7.pdb (#4) relative to
    38404 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38405 Matrix rotation and translation 
    38406 -0.01692687 -0.69781792 0.71607516 219.88635890 
    38407 -0.07055059 0.71522626 0.69532295 243.07545144 
    38408 -0.99736457 -0.03874988 -0.06133800 272.75720508 
    38409 Axis -0.37323686 0.87119266 0.31893196 
    38410 Axis point 259.29199268 0.00000000 -51.78350649 
    38411 Rotation angle (degrees) 100.45826756 
    38412 Shift along axis 216.68684493 
    38413  
    38414 
    38415 > hide #4 models
    38416 
    38417 > show #!25.2 models
    38418 
    38419 > show #25.3 models
    38420 
    38421 > fitmap #25.3 inMap #34
    38422 
    38423 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    38424 relion_locres_filtered_20240326_GT.mrc (#34) using 3371 atoms 
    38425 average map value = 0.01534, steps = 84 
    38426 shifted from previous position = 0.664 
    38427 rotated from previous position = 0.704 degrees 
    38428 atoms outside contour = 522, contour level = 0.0074676 
    38429  
    38430 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    38431 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38432 Matrix rotation and translation 
    38433 -0.47952602 0.87307180 -0.08831997 209.44256838 
    38434 -0.87665218 -0.48110979 0.00378334 404.39983371 
    38435 -0.03918847 0.07924011 0.99608496 146.36841160 
    38436 Axis 0.04306796 -0.02804246 -0.99867851 
    38437 Axis point 226.30279310 136.28079993 0.00000000 
    38438 Rotation angle (degrees) 118.83411947 
    38439 Shift along axis -148.49509082 
    38440  
    38441 
    38442 > fitmap #25.3 inMap #34
    38443 
    38444 Fit molecule 5nzr_COPI_coat_leaf_2017.cif C (#25.3) to map
    38445 relion_locres_filtered_20240326_GT.mrc (#34) using 3371 atoms 
    38446 average map value = 0.01534, steps = 44 
    38447 shifted from previous position = 0.00967 
    38448 rotated from previous position = 0.00924 degrees 
    38449 atoms outside contour = 522, contour level = 0.0074676 
    38450  
    38451 Position of 5nzr_COPI_coat_leaf_2017.cif C (#25.3) relative to
    38452 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38453 Matrix rotation and translation 
    38454 -0.47945371 0.87310077 -0.08842613 209.44463068 
    38455 -0.87668580 -0.48104930 0.00368385 404.41695980 
    38456 -0.03932096 0.07928817 0.99607592 146.39029199 
    38457 Axis 0.04315051 -0.02802635 -0.99867540 
    38458 Axis point 226.32606671 136.28067031 0.00000000 
    38459 Rotation angle (degrees) 118.83007225 
    38460 Shift along axis -148.49307228 
    38461  
    38462 
    38463 > hide #25.3 models
    38464 
    38465 > show #25.3 models
    38466 
    38467 > hide #25.3 models
    38468 
    38469 > show #25.3 models
    38470 
    38471 > hide #27.1 models
    38472 
    38473 > show #27.1 models
    38474 
    38475 > hide #27.1 models
    38476 
    38477 > fitmap #27.1 inMap #34
    38478 
    38479 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    38480 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    38481 average map value = 0.008658, steps = 64 
    38482 shifted from previous position = 1.03 
    38483 rotated from previous position = 1.81 degrees 
    38484 atoms outside contour = 3144, contour level = 0.0074676 
    38485  
    38486 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    38487 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38488 Matrix rotation and translation 
    38489 0.99803851 -0.02181724 0.05867833 -72.22086949 
    38490 0.02067138 0.99958497 0.02006446 -76.16555965 
    38491 -0.05909172 -0.01881214 0.99807528 -69.82650088 
    38492 Axis -0.29654810 0.89834191 0.32410034 
    38493 Axis point -850.35345607 0.00000000 1554.29607241 
    38494 Rotation angle (degrees) 3.75835093 
    38495 Shift along axis -69.63654543 
    38496  
    38497 
    38498 > show #27.1 models
    38499 
    38500 > hide #27.1 models
    38501 
    38502 > show #27.1 models
    38503 
    38504 > hide #27.1 models
    38505 
    38506 > hide #!25.4 models
    38507 
    38508 > show #!25.4 models
    38509 
    38510 > hide #!25.4 models
    38511 
    38512 > show #!25.4 models
    38513 
    38514 > fitmap #25.4 inMap #34
    38515 
    38516 Fit molecule 5nzr_COPI_coat_leaf_2017.cif D (#25.4) to map
    38517 relion_locres_filtered_20240326_GT.mrc (#34) using 706 atoms 
    38518 average map value = 0.01592, steps = 80 
    38519 shifted from previous position = 0.636 
    38520 rotated from previous position = 0.772 degrees 
    38521 atoms outside contour = 40, contour level = 0.0074676 
    38522  
    38523 Position of 5nzr_COPI_coat_leaf_2017.cif D (#25.4) relative to
    38524 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38525 Matrix rotation and translation 
    38526 -0.50259492 0.85687248 -0.11475140 219.26231166 
    38527 -0.86423372 -0.50140934 0.04109425 401.64865313 
    38528 -0.02232489 0.11982579 0.99254389 141.09944210 
    38529 Axis 0.04563133 -0.05356868 -0.99752102 
    38530 Axis point 225.86212363 132.07231659 0.00000000 
    38531 Rotation angle (degrees) 120.37983597 
    38532 Shift along axis -152.26021475 
    38533  
    38534 
    38535 > fitmap #25.4 inMap #34
    38536 
    38537 Fit molecule 5nzr_COPI_coat_leaf_2017.cif D (#25.4) to map
    38538 relion_locres_filtered_20240326_GT.mrc (#34) using 706 atoms 
    38539 average map value = 0.01592, steps = 28 
    38540 shifted from previous position = 0.0373 
    38541 rotated from previous position = 0.0643 degrees 
    38542 atoms outside contour = 40, contour level = 0.0074676 
    38543  
    38544 Position of 5nzr_COPI_coat_leaf_2017.cif D (#25.4) relative to
    38545 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38546 Matrix rotation and translation 
    38547 -0.50212529 0.85727199 -0.11381966 219.06728753 
    38548 -0.86451661 -0.50093569 0.04092016 401.63147027 
    38549 -0.02193662 0.11894603 0.99265836 141.09360375 
    38550 Axis 0.04520610 -0.05323457 -0.99755826 
    38551 Axis point 225.82056137 132.11900207 0.00000000 
    38552 Rotation angle (degrees) 120.34471710 
    38553 Shift along axis -152.22659262 
    38554  
    38555 
    38556 > show #25.5 models
    38557 
    38558 > fitmap #25.5 inMap #34
    38559 
    38560 Fit molecule 5nzr_COPI_coat_leaf_2017.cif F (#25.5) to map
    38561 relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms 
    38562 average map value = 0.008629, steps = 108 
    38563 shifted from previous position = 2.52 
    38564 rotated from previous position = 6.05 degrees 
    38565 atoms outside contour = 338, contour level = 0.0074676 
    38566  
    38567 Position of 5nzr_COPI_coat_leaf_2017.cif F (#25.5) relative to
    38568 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38569 Matrix rotation and translation 
    38570 -0.74390514 0.41955755 0.52016977 246.08931688 
    38571 -0.36884298 -0.90684067 0.20394814 333.22564308 
    38572 0.55727909 -0.04014290 0.82935430 68.10850364 
    38573 Axis -0.29545411 -0.04491808 -0.95430039 
    38574 Axis point 149.46993327 142.24417457 0.00000000 
    38575 Rotation angle (degrees) 155.60167823 
    38576 Shift along axis -152.67192692 
    38577  
    38578 
    38579 > show #5 models
    38580 
    38581 > hide #5 models
    38582 
    38583 > show #5 models
    38584 
    38585 > hide #25.5 models
    38586 
    38587 > show #25.5 models
    38588 
    38589 > hide #25.5 models
    38590 
    38591 > show #!25.6 models
    38592 
    38593 > fitmap #25.6 inMap #34
    38594 
    38595 Fit molecule 5nzr_COPI_coat_leaf_2017.cif G (#25.6) to map
    38596 relion_locres_filtered_20240326_GT.mrc (#34) using 3190 atoms 
    38597 average map value = 0.01344, steps = 84 
    38598 shifted from previous position = 0.406 
    38599 rotated from previous position = 0.865 degrees 
    38600 atoms outside contour = 1483, contour level = 0.0074676 
    38601  
    38602 Position of 5nzr_COPI_coat_leaf_2017.cif G (#25.6) relative to
    38603 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38604 Matrix rotation and translation 
    38605 -0.57147431 0.81988072 -0.03482392 221.54231101 
    38606 -0.81988901 -0.57224165 -0.01793004 410.33209307 
    38607 -0.03462819 0.01830519 0.99923260 151.13544845 
    38608 Axis 0.02209236 -0.00011934 -0.99975593 
    38609 Axis point 219.47770757 146.52154587 0.00000000 
    38610 Rotation angle (degrees) 124.90669341 
    38611 Shift along axis -146.25313402 
    38612  
    38613 
    38614 > fitmap #25.6 inMap #34
    38615 
    38616 Fit molecule 5nzr_COPI_coat_leaf_2017.cif G (#25.6) to map
    38617 relion_locres_filtered_20240326_GT.mrc (#34) using 3190 atoms 
    38618 average map value = 0.01344, steps = 48 
    38619 shifted from previous position = 0.0123 
    38620 rotated from previous position = 0.0426 degrees 
    38621 atoms outside contour = 1483, contour level = 0.0074676 
    38622  
    38623 Position of 5nzr_COPI_coat_leaf_2017.cif G (#25.6) relative to
    38624 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38625 Matrix rotation and translation 
    38626 -0.57128690 0.82001501 -0.03473701 221.50468882 
    38627 -0.82004569 -0.57203843 -0.01723646 410.23469118 
    38628 -0.03400507 0.01863897 0.99924783 151.05061499 
    38629 Axis 0.02186922 -0.00044619 -0.99976074 
    38630 Axis point 219.43497350 146.44850987 0.00000000 
    38631 Rotation angle (degrees) 124.89251663 
    38632 Shift along axis -146.35338032 
    38633  
    38634 
    38635 > fitmap #25.7 inMap #34
    38636 
    38637 Fit molecule 5nzr_COPI_coat_leaf_2017.cif K (#25.7) to map
    38638 relion_locres_filtered_20240326_GT.mrc (#34) using 2239 atoms 
    38639 average map value = 0.01256, steps = 52 
    38640 shifted from previous position = 1.07 
    38641 rotated from previous position = 0.975 degrees 
    38642 atoms outside contour = 1129, contour level = 0.0074676 
    38643  
    38644 Position of 5nzr_COPI_coat_leaf_2017.cif K (#25.7) relative to
    38645 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38646 Matrix rotation and translation 
    38647 -0.55272261 0.83288176 -0.02838457 218.72191943 
    38648 -0.83335224 -0.55220263 0.02441902 405.50722908 
    38649 0.00466412 0.03715129 0.99929876 143.32138373 
    38650 Axis 0.00763962 -0.01982989 -0.99977418 
    38651 Axis point 217.94279070 142.32445254 0.00000000 
    38652 Rotation angle (degrees) 123.56022805 
    38653 Shift along axis -149.65922830 
    38654  
    38655 
    38656 > fitmap #25.7 inMap #34
    38657 
    38658 Fit molecule 5nzr_COPI_coat_leaf_2017.cif K (#25.7) to map
    38659 relion_locres_filtered_20240326_GT.mrc (#34) using 2239 atoms 
    38660 average map value = 0.01256, steps = 48 
    38661 shifted from previous position = 0.00983 
    38662 rotated from previous position = 0.0758 degrees 
    38663 atoms outside contour = 1127, contour level = 0.0074676 
    38664  
    38665 Position of 5nzr_COPI_coat_leaf_2017.cif K (#25.7) relative to
    38666 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38667 Matrix rotation and translation 
    38668 -0.55336415 0.83247015 -0.02795643 218.83773390 
    38669 -0.83292953 -0.55288209 0.02344748 405.67633701 
    38670 0.00406271 0.03626073 0.99933410 143.56168250 
    38671 Axis 0.00769215 -0.01922198 -0.99978565 
    38672 Axis point 217.97393466 142.47245648 0.00000000 
    38673 Rotation angle (degrees) 123.60443854 
    38674 Shift along axis -149.64548098 
    38675  
    38676 
    38677 > fitmap #25.7 inMap #34
    38678 
    38679 Fit molecule 5nzr_COPI_coat_leaf_2017.cif K (#25.7) to map
    38680 relion_locres_filtered_20240326_GT.mrc (#34) using 2239 atoms 
    38681 average map value = 0.01256, steps = 44 
    38682 shifted from previous position = 0.013 
    38683 rotated from previous position = 0.027 degrees 
    38684 atoms outside contour = 1127, contour level = 0.0074676 
    38685  
    38686 Position of 5nzr_COPI_coat_leaf_2017.cif K (#25.7) relative to
    38687 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38688 Matrix rotation and translation 
    38689 -0.55355150 0.83234120 -0.02808664 218.90273150 
    38690 -0.83280689 -0.55308296 0.02306328 405.73589241 
    38691 0.00366228 0.03615745 0.99933939 143.63218421 
    38692 Axis 0.00786200 -0.01906267 -0.99978738 
    38693 Axis point 218.01141751 142.50521368 0.00000000 
    38694 Rotation angle (degrees) 123.61761083 
    38695 Shift along axis -149.61504017 
    38696  
    38697 
    38698 > hide #25.8 models
    38699 
    38700 > show #25.8 models
    38701 
    38702 > fitmap #25.8 inMap #34
    38703 
    38704 Fit molecule 5nzr_COPI_coat_leaf_2017.cif L (#25.8) to map
    38705 relion_locres_filtered_20240326_GT.mrc (#34) using 555 atoms 
    38706 average map value = 0.01074, steps = 80 
    38707 shifted from previous position = 0.588 
    38708 rotated from previous position = 3.23 degrees 
    38709 atoms outside contour = 145, contour level = 0.0074676 
    38710  
    38711 Position of 5nzr_COPI_coat_leaf_2017.cif L (#25.8) relative to
    38712 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38713 Matrix rotation and translation 
    38714 -0.50467604 0.86246487 -0.03816319 206.27513790 
    38715 -0.86298707 -0.50520155 -0.00497054 404.78071206 
    38716 -0.02356702 0.03042583 0.99925915 148.79813129 
    38717 Axis 0.02050921 -0.00845725 -0.99975389 
    38718 Axis point 220.35656340 141.75148805 0.00000000 
    38719 Rotation angle (degrees) 120.35188135 
    38720 Shift along axis -147.95430385 
    38721  
    38722 
    38723 > fitmap #25.8 inMap #34
    38724 
    38725 Fit molecule 5nzr_COPI_coat_leaf_2017.cif L (#25.8) to map
    38726 relion_locres_filtered_20240326_GT.mrc (#34) using 555 atoms 
    38727 average map value = 0.01074, steps = 28 
    38728 shifted from previous position = 0.0403 
    38729 rotated from previous position = 0.073 degrees 
    38730 atoms outside contour = 143, contour level = 0.0074676 
    38731  
    38732 Position of 5nzr_COPI_coat_leaf_2017.cif L (#25.8) relative to
    38733 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38734 Matrix rotation and translation 
    38735 -0.50517247 0.86222276 -0.03704961 206.30150521 
    38736 -0.86270534 -0.50567988 -0.00522873 404.82655458 
    38737 -0.02324358 0.02932149 0.99929974 148.95156873 
    38738 Axis 0.02002529 -0.00800197 -0.99976745 
    38739 Axis point 220.29338844 141.85869129 0.00000000 
    38740 Rotation angle (degrees) 120.38289886 
    38741 Shift along axis -148.02509348 
    38742  
    38743 
    38744 > fitmap #25.9 inMap #34
    38745 
    38746 Fit molecule 5nzr_COPI_coat_leaf_2017.cif M (#25.9) to map
    38747 relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms 
    38748 average map value = 0.01577, steps = 124 
    38749 shifted from previous position = 0.71 
    38750 rotated from previous position = 2.19 degrees 
    38751 atoms outside contour = 69, contour level = 0.0074676 
    38752  
    38753 Position of 5nzr_COPI_coat_leaf_2017.cif M (#25.9) relative to
    38754 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38755 Matrix rotation and translation 
    38756 -0.53966745 0.84095711 0.03937224 209.53471555 
    38757 -0.84152726 -0.54020254 0.00361411 405.93665350 
    38758 0.02430829 -0.03118240 0.99921807 152.45933187 
    38759 Axis -0.02067637 0.00895112 -0.99974615 
    38760 Axis point 214.47181659 147.26852788 0.00000000 
    38761 Rotation angle (degrees) 122.70583146 
    38762 Shift along axis -153.11946032 
    38763  
    38764 
    38765 > fitmap #25.9 inMap #34
    38766 
    38767 Fit molecule 5nzr_COPI_coat_leaf_2017.cif M (#25.9) to map
    38768 relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms 
    38769 average map value = 0.01577, steps = 76 
    38770 shifted from previous position = 0.0109 
    38771 rotated from previous position = 0.0634 degrees 
    38772 atoms outside contour = 71, contour level = 0.0074676 
    38773  
    38774 Position of 5nzr_COPI_coat_leaf_2017.cif M (#25.9) relative to
    38775 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38776 Matrix rotation and translation 
    38777 -0.54017038 0.84066532 0.03870098 209.70718956 
    38778 -0.84123061 -0.54066853 0.00293096 406.05692255 
    38779 0.02338836 -0.03097324 0.99924653 152.52956116 
    38780 Axis -0.02015339 0.00910216 -0.99975547 
    38781 Axis point 214.56120528 147.30897566 0.00000000 
    38782 Rotation angle (degrees) 122.73785558 
    38783 Shift along axis -153.02257931 
    38784  
    38785 
    38786 > show #25.10 models
    38787 
    38788 > fitmap #25.10 inMap #34
    38789 
    38790 Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map
    38791 relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms 
    38792 average map value = 0.01241, steps = 88 
    38793 shifted from previous position = 1.33 
    38794 rotated from previous position = 3.32 degrees 
    38795 atoms outside contour = 194, contour level = 0.0074676 
    38796  
    38797 Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to
    38798 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38799 Matrix rotation and translation 
    38800 -0.57909157 0.81427968 -0.04001926 223.95348284 
    38801 -0.80966806 -0.58016521 -0.08857739 418.65309158 
    38802 -0.09534455 -0.01889210 0.99526504 159.84091487 
    38803 Axis 0.04284677 0.03401737 -0.99850236 
    38804 Axis point 224.35627291 152.90637180 0.00000000 
    38805 Rotation angle (degrees) 125.59104470 
    38806 Shift along axis -135.76437017 
    38807  
    38808 
    38809 > fitmap #25.10 inMap #34
    38810 
    38811 Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map
    38812 relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms 
    38813 average map value = 0.0124, steps = 180 
    38814 shifted from previous position = 0.00625 
    38815 rotated from previous position = 0.0139 degrees 
    38816 atoms outside contour = 194, contour level = 0.0074676 
    38817  
    38818 Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to
    38819 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38820 Matrix rotation and translation 
    38821 -0.57903412 0.81432513 -0.03992575 223.92618448 
    38822 -0.80969492 -0.58009510 -0.08879070 418.66701441 
    38823 -0.09546523 -0.01908517 0.99524978 159.88432576 
    38824 Axis 0.04285711 0.03414738 -0.99849748 
    38825 Axis point 224.36219273 152.92599870 0.00000000 
    38826 Rotation angle (degrees) 125.58708831 
    38827 Shift along axis -135.75088596 
    38828  
    38829 
    38830 > fitmap #25.11 inMap #34
    38831 
    38832 Fit molecule 5nzr_COPI_coat_leaf_2017.cif Z (#25.11) to map
    38833 relion_locres_filtered_20240326_GT.mrc (#34) using 555 atoms 
    38834 average map value = 0.01758, steps = 52 
    38835 shifted from previous position = 0.864 
    38836 rotated from previous position = 2.13 degrees 
    38837 atoms outside contour = 29, contour level = 0.0074676 
    38838  
    38839 Position of 5nzr_COPI_coat_leaf_2017.cif Z (#25.11) relative to
    38840 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38841 Matrix rotation and translation 
    38842 -0.54661403 0.83480638 -0.06566128 221.77840345 
    38843 -0.83696530 -0.54713943 0.01129254 405.31468918 
    38844 -0.02649879 0.06112887 0.99777806 145.35185938 
    38845 Axis 0.02978909 -0.02340892 -0.99928206 
    38846 Axis point 221.70681989 139.79750674 0.00000000 
    38847 Rotation angle (degrees) 123.22907022 
    38848 Shift along axis -148.12890886 
    38849  
    38850 
    38851 > hide #25.11 models
    38852 
    38853 > show #25.11 models
    38854 
    38855 > hide #25.8 models
    38856 
    38857 > show #25.8 models
    38858 
    38859 > hide #31.1 models
    38860 
    38861 > show #31.1 models
    38862 
    38863 > fitmap #31.1 inMap #34
    38864 
    38865 Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map
    38866 relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms 
    38867 average map value = 0.01025, steps = 52 
    38868 shifted from previous position = 0.845 
    38869 rotated from previous position = 1.26 degrees 
    38870 atoms outside contour = 483, contour level = 0.0074676 
    38871  
    38872 Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to
    38873 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38874 Matrix rotation and translation 
    38875 0.97543397 0.21971428 -0.01594367 223.15831279 
    38876 -0.21945560 0.97548294 0.01650070 253.44359243 
    38877 0.01917822 -0.01259642 0.99973673 253.90331968 
    38878 Axis -0.06590038 -0.07954554 -0.99465052 
    38879 Axis point 1140.29145699 -801.97494212 0.00000000 
    38880 Rotation angle (degrees) 12.75402354 
    38881 Shift along axis -287.41159217 
    38882  
    38883 
    38884 > fitmap #31.1 inMap #34
    38885 
    38886 Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map
    38887 relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms 
    38888 average map value = 0.01025, steps = 28 
    38889 shifted from previous position = 0.0388 
    38890 rotated from previous position = 0.107 degrees 
    38891 atoms outside contour = 484, contour level = 0.0074676 
    38892  
    38893 Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to
    38894 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38895 Matrix rotation and translation 
    38896 0.97529083 0.22021143 -0.01774054 223.17848705 
    38897 -0.21993270 0.97537725 0.01639591 253.48098162 
    38898 0.02091429 -0.01208906 0.99970818 253.85881041 
    38899 Axis -0.06433566 -0.08730514 -0.99410197 
    38900 Axis point 1127.72585108 -802.54669976 0.00000000 
    38901 Rotation angle (degrees) 12.78996814 
    38902 Shift along axis -288.85007223 
    38903  
    38904 
    38905 > hide #31.1 models
    38906 
    38907 > show #32.2 models
    38908 
    38909 > hide #32.2 models
    38910 
    38911 > show #32.2 models
    38912 
    38913 > hide #32.2 models
    38914 
    38915 > show #32.2 models
    38916 
    38917 > fitmap #32.2 inMap #34
    38918 
    38919 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map
    38920 relion_locres_filtered_20240326_GT.mrc (#34) using 1222 atoms 
    38921 average map value = 0.00967, steps = 68 
    38922 shifted from previous position = 0.749 
    38923 rotated from previous position = 3.7 degrees 
    38924 atoms outside contour = 496, contour level = 0.0074676 
    38925  
    38926 Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to
    38927 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38928 Matrix rotation and translation 
    38929 0.97959844 0.04140448 0.19665342 249.12109135 
    38930 -0.05617405 0.99595505 0.07012851 194.53555530 
    38931 -0.19295433 -0.07974459 0.97796187 284.10527219 
    38932 Axis -0.34960471 0.90882688 -0.22761866 
    38933 Axis point 1632.36086288 0.00000000 -1141.96661413 
    38934 Rotation angle (degrees) 12.37719153 
    38935 Shift along axis 25.03757364 
    38936  
    38937 
    38938 > fitmap #32.2 inMap #34
    38939 
    38940 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map
    38941 relion_locres_filtered_20240326_GT.mrc (#34) using 1222 atoms 
    38942 average map value = 0.009669, steps = 40 
    38943 shifted from previous position = 0.0174 
    38944 rotated from previous position = 0.0299 degrees 
    38945 atoms outside contour = 497, contour level = 0.0074676 
    38946  
    38947 Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to
    38948 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38949 Matrix rotation and translation 
    38950 0.97962421 0.04168681 0.19646529 249.12134924 
    38951 -0.05651158 0.99591229 0.07046386 194.54450077 
    38952 -0.19272478 -0.08013067 0.97797558 284.11629865 
    38953 Axis -0.35127532 0.90782087 -0.22905658 
    38954 Axis point 1633.21810015 0.00000000 -1141.58497569 
    38955 Rotation angle (degrees) 12.37763046 
    38956 Shift along axis 24.02266830 
    38957  
    38958 
    38959 > hide #32.2 models
    38960 
    38961 > show #32.1 models
    38962 
    38963 > fitmap #32.1 inMap #34
    38964 
    38965 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map
    38966 relion_locres_filtered_20240326_GT.mrc (#34) using 2991 atoms 
    38967 average map value = 0.01065, steps = 76 
    38968 shifted from previous position = 0.00598 
    38969 rotated from previous position = 0.0249 degrees 
    38970 atoms outside contour = 1338, contour level = 0.0074676 
    38971  
    38972 Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to
    38973 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38974 Matrix rotation and translation 
    38975 0.99549389 -0.07975464 0.05129444 253.51897719 
    38976 0.06913771 0.98067704 0.18300962 192.97132986 
    38977 -0.06489914 -0.17863858 0.98177205 287.91294533 
    38978 Axis -0.88640516 0.28479221 0.36493737 
    38979 Axis point 0.00000000 1841.88880018 -960.63155214 
    38980 Rotation angle (degrees) 11.77079789 
    38981 Shift along axis -64.69360508 
    38982  
    38983 
    38984 > fitmap #32.1 inMap #34
    38985 
    38986 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map
    38987 relion_locres_filtered_20240326_GT.mrc (#34) using 2991 atoms 
    38988 average map value = 0.01065, steps = 64 
    38989 shifted from previous position = 0.0276 
    38990 rotated from previous position = 0.0516 degrees 
    38991 atoms outside contour = 1340, contour level = 0.0074676 
    38992  
    38993 Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to
    38994 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    38995 Matrix rotation and translation 
    38996 0.99555213 -0.07911083 0.05116079 253.49467224 
    38997 0.06848984 0.98061581 0.18358045 192.96529574 
    38998 -0.06469228 -0.17925991 0.98167245 287.91864772 
    38999 Axis -0.88825599 0.28361561 0.36133569 
    39000 Axis point 0.00000000 1838.11694158 -959.62478426 
    39001 Rotation angle (degrees) 11.78519610 
    39002 Shift along axis -66.40491008 
    39003  
    39004 
    39005 > hide #32.1 models
    39006 
    39007 > show #31.1 models
    39008 
    39009 > hide #31.1 models
    39010 
    39011 > show #31.1 models
    39012 
    39013 > hide #31.1 models
    39014 
    39015 > show #31.1 models
    39016 
    39017 > hide #31.1 models
    39018 
    39019 > show #31.1 models
    39020 
    39021 > fitmap #31.1 inMap #34
    39022 
    39023 Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map
    39024 relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms 
    39025 average map value = 0.01025, steps = 40 
    39026 shifted from previous position = 0.025 
    39027 rotated from previous position = 0.0414 degrees 
    39028 atoms outside contour = 483, contour level = 0.0074676 
    39029  
    39030 Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to
    39031 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    39032 Matrix rotation and translation 
    39033 0.97536139 0.21995150 -0.01707324 223.17039763 
    39034 -0.21968240 0.97543492 0.01632075 253.45807998 
    39035 0.02024361 -0.01216794 0.99972103 253.88051004 
    39036 Axis -0.06443458 -0.08440176 -0.99434628 
    39037 Axis point 1132.84099748 -803.30257695 0.00000000 
    39038 Rotation angle (degrees) 12.77169891 
    39039 Shift along axis -288.21733823 
    39040  
    39041 
    39042 > fitmap #31.1 inMap #34
    39043 
    39044 Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map
    39045 relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms 
    39046 average map value = 0.01025, steps = 28 
    39047 shifted from previous position = 0.034 
    39048 rotated from previous position = 0.0637 degrees 
    39049 atoms outside contour = 488, contour level = 0.0074676 
    39050  
    39051 Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to
    39052 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    39053 Matrix rotation and translation 
    39054 0.97526637 0.22028822 -0.01812743 223.18295814 
    39055 -0.22000553 0.97536137 0.01636331 253.48943051 
    39056 0.02128544 -0.01197045 0.99970177 253.84909039 
    39057 Axis -0.06396440 -0.08897586 -0.99397779 
    39058 Axis point 1125.16763021 -802.84882228 0.00000000 
    39059 Rotation angle (degrees) 12.79601525 
    39060 Shift along axis -289.15056334 
    39061  
    39062 
    39063 > fitmap #31.1 inMap #34
    39064 
    39065 Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map
    39066 relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms 
    39067 average map value = 0.01025, steps = 36 
    39068 shifted from previous position = 0.00784 
    39069 rotated from previous position = 0.0335 degrees 
    39070 atoms outside contour = 487, contour level = 0.0074676 
    39071  
    39072 Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to
    39073 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    39074 Matrix rotation and translation 
    39075 0.97532297 0.21999563 -0.01862878 223.18772395 
    39076 -0.21970776 0.97542913 0.01632549 253.47880020 
    39077 0.02176259 -0.01182974 0.99969318 253.84507105 
    39078 Axis -0.06363463 -0.09128996 -0.99378910 
    39079 Axis point 1123.37013789 -804.72959050 0.00000000 
    39080 Rotation angle (degrees) 12.78103464 
    39081 Shift along axis -289.61100380 
    39082  
    39083 
    39084 > hide #31.1 models
    39085 
    39086 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    39087 > dataset/Chimera sessions/20240326_leaf_fitting_v12.cxs"
    39088 
    39089 > hide #!9 models
    39090 
    39091 > show #!9 models
    39092 
    39093 > hide #!9 models
    39094 
    39095 > show #!9 models
    39096 
    39097 > hide #!9 models
    39098 
    39099 > hide #!25.6 models
    39100 
    39101 > show #!25.6 models
    39102 
    39103 > hide #!25.6 models
    39104 
    39105 > show #!25.6 models
    39106 
    39107 > hide #!25.7 models
    39108 
    39109 > show #!25.7 models
    39110 
    39111 > hide #28.1 models
    39112 
    39113 > show #28.1 models
    39114 
    39115 > hide #28.1 models
    39116 
    39117 > show #28.1 models
    39118 
    39119 > hide #28.1 models
    39120 
    39121 > hide #28.2 models
    39122 
    39123 > show #28.2 models
    39124 
    39125 > show #28.1 models
    39126 
    39127 > hide #28.1 models
    39128 
    39129 > hide #28.2 models
    39130 
    39131 > show #28.2 models
    39132 
    39133 > hide #28.2 models
    39134 
    39135 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    39136 > dataset/Chimera sessions/20240326_leaf_fitting_v13.cxs"
    39137 
    39138 ——— End of log from Tue Mar 26 13:48:19 2024 ———
    39139 
    39140 opened ChimeraX session 
    39141 
    39142 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    39143 > resources/Processing/20240229_COPI_budding/Symmetry_splitting_masks/cryosparc_P126_J1413_005_volume_map.mrc"
    39144 
    39145 Opened cryosparc_P126_J1413_005_volume_map.mrc as #35, grid size 480,480,480,
    39146 pixel 0.953, shown at level 0.144, step 2, values float32 
    39147 
    39148 > select add #35
    39149 
    39150 2 models selected 
    39151 
    39152 > ui mousemode right "translate selected models"
    39153 
    39154 > view matrix models #35,1,0,0,38.872,0,1,0,127.16,0,0,1,30.564
    39155 
    39156 > ui mousemode right "rotate selected models"
    39157 
    39158 > view matrix models
    39159 > #35,0.97306,-0.10077,-0.20734,114.45,-0.019022,-0.93144,0.36341,481.54,-0.22975,-0.34967,-0.90826,592.75
    39160 
    39161 > view matrix models
    39162 > #35,0.93801,0.14095,0.31667,-45.352,0.021261,-0.93527,0.3533,473.56,0.34597,-0.32467,-0.88028,422.86
    39163 
    39164 > ui mousemode right "translate selected models"
    39165 
    39166 > view matrix models
    39167 > #35,0.93801,0.14095,0.31667,-28.084,0.021261,-0.93527,0.3533,500.77,0.34597,-0.32467,-0.88028,428.08
    39168 
    39169 > view matrix models
    39170 > #35,0.93801,0.14095,0.31667,-11.53,0.021261,-0.93527,0.3533,471.38,0.34597,-0.32467,-0.88028,495.07
    39171 
    39172 > view matrix models
    39173 > #35,0.93801,0.14095,0.31667,-31.081,0.021261,-0.93527,0.3533,476.85,0.34597,-0.32467,-0.88028,521.42
    39174 
    39175 > ui mousemode right "rotate selected models"
    39176 
    39177 > view matrix models
    39178 > #35,0.90217,0.27291,0.33409,-54.42,0.12759,-0.90861,0.39768,431.92,0.41209,-0.31614,-0.85454,495.68
    39179 
    39180 > ui tool show "Fit in Map"
    39181 
    39182 > fitmap #35 inMap #34
    39183 
    39184 Fit map cryosparc_P126_J1413_005_volume_map.mrc in map
    39185 relion_locres_filtered_20240326_GT.mrc using 138168 points 
    39186 correlation = 0.7875, correlation about mean = 0.5223, overlap = 232.2 
    39187 steps = 460, shift = 51.8, angle = 39.7 degrees 
    39188  
    39189 Position of cryosparc_P126_J1413_005_volume_map.mrc (#35) relative to
    39190 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    39191 Matrix rotation and translation 
    39192 0.96692083 -0.25367451 0.02670869 70.21163555 
    39193 -0.25379291 -0.96725797 0.00108444 522.06873341 
    39194 0.02555910 -0.00782705 -0.99964267 447.02232309 
    39195 Axis -0.99169569 0.12792986 -0.01317644 
    39196 Axis point 0.00000000 266.06925773 222.45211839 
    39197 Rotation angle (degrees) 179.74256592 
    39198 Shift along axis -8.73056298 
    39199  
    39200 
    39201 > hide #!35 models
    39202 
    39203 > show #!35 models
    39204 
    39205 > hide #!35 models
    39206 
    39207 > show #!35 models
    39208 
    39209 > volume #35 step 1
    39210 
    39211 > volume #35 level 0.2171
    39212 
    39213 > color #35 #73fdffff models
    39214 
    39215 > color #35 #73fdffbf models
    39216 
    39217 > ui mousemode right "translate selected models"
    39218 
    39219 > view matrix models
    39220 > #35,0.97012,-0.24173,0.020899,128.31,-0.242,-0.97021,0.011413,594.75,0.017517,-0.01613,-0.99972,528.01
    39221 
    39222 > view matrix models
    39223 > #35,0.97012,-0.24173,0.020899,130.17,-0.242,-0.97021,0.011413,594.76,0.017517,-0.01613,-0.99972,528.11
    39224 
    39225 > fitmap #35 inMap #34
    39226 
    39227 Fit map cryosparc_P126_J1413_005_volume_map.mrc in map
    39228 relion_locres_filtered_20240326_GT.mrc using 251397 points 
    39229 correlation = 0.8287, correlation about mean = 0.3769, overlap = 1089 
    39230 steps = 52, shift = 1.44, angle = 0.114 degrees 
    39231  
    39232 Position of cryosparc_P126_J1413_005_volume_map.mrc (#35) relative to
    39233 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    39234 Matrix rotation and translation 
    39235 0.96688100 -0.25361193 0.02867252 69.83312106 
    39236 -0.25375364 -0.96726793 0.00135627 521.99028503 
    39237 0.02739005 -0.00858711 -0.99958794 446.87697447 
    39238 Axis -0.99168564 0.12790564 -0.01413325 
    39239 Axis point 0.00000000 266.06324281 222.27972065 
    39240 Rotation angle (degrees) 179.71275392 
    39241 Shift along axis -8.80282672 
    39242  
    39243 
    39244 > select subtract #35
    39245 
    39246 Nothing selected 
    39247 
    39248 > hide #!34 models
    39249 
    39250 > volume #35 level 0.1987
    39251 
    39252 > hide #!35 models
    39253 
    39254 > show #!34 models
    39255 
    39256 > hide #!34 models
    39257 
    39258 > show #!35 models
    39259 
    39260 > hide #!35 models
    39261 
    39262 > show #!35 models
    39263 
    39264 > show #!34 models
    39265 
    39266 > volume #35 level 0.1359
    39267 
    39268 > hide #!35 models
    39269 
    39270 > show #!35 models
    39271 
    39272 > hide #!34 models
    39273 
    39274 > hide #!35 models
    39275 
    39276 > show #!34 models
    39277 
    39278 > hide #!34 models
    39279 
    39280 > show #!35 models
    39281 
    39282 > show #!34 models
    39283 
    39284 > hide #!35 models
    39285 
    39286 > show #!35 models
    39287 
    39288 > hide #!35 models
    39289 
    39290 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    39291 > dataset/Chimera sessions/20240326_leaf_fitting_v14.cxs"
    39292 
    39293 > show #!35 models
    39294 
    39295 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    39296 > resources/Processing/20240229_COPI_budding/cryosparc_P126_J1449_008_volume_map_sharp.mrc"
    39297 
    39298 Opened cryosparc_P126_J1449_008_volume_map_sharp.mrc as #36, grid size
    39299 480,480,480, pixel 0.953, shown at level 0.17, step 2, values float32 
    39300 
    39301 > color #36 #73fdffff models
    39302 
    39303 > color #36 #73fdffc8 models
    39304 
    39305 > select add #36
    39306 
    39307 2 models selected 
    39308 
    39309 > color #36 #73fdffc7 models
    39310 
    39311 > view matrix models #36,1,0,0,134.54,0,1,0,66.108,0,0,1,19.086
    39312 
    39313 > view matrix models #36,1,0,0,137.13,0,1,0,64.787,0,0,1,117.11
    39314 
    39315 > ui mousemode right "rotate selected models"
    39316 
    39317 > view matrix models
    39318 > #36,0.056086,-0.92264,0.38156,461.04,-0.99189,-0.095145,-0.084268,550.52,0.11405,-0.37374,-0.92049,639.45
    39319 
    39320 > view matrix models
    39321 > #36,0.81264,-0.57783,0.075758,289.88,-0.58232,-0.81023,0.066513,583.57,0.022949,-0.098166,-0.99491,615.85
    39322 
    39323 > view matrix models
    39324 > #36,0.78553,-0.58331,0.20662,265.51,-0.59501,-0.80369,-0.0067434,602.61,0.16999,-0.11764,-0.9784,583.63
    39325 
    39326 > ui mousemode right "translate selected models"
    39327 
    39328 > view matrix models
    39329 > #36,0.78553,-0.58331,0.20662,270.11,-0.59501,-0.80369,-0.0067434,598.27,0.16999,-0.11764,-0.9784,540.75
    39330 
    39331 > view matrix models
    39332 > #36,0.78553,-0.58331,0.20662,259.65,-0.59501,-0.80369,-0.0067434,611.27,0.16999,-0.11764,-0.9784,540.23
    39333 
    39334 > fitmap #36 inMap #34
    39335 
    39336 Fit map cryosparc_P126_J1449_008_volume_map_sharp.mrc in map
    39337 relion_locres_filtered_20240326_GT.mrc using 137972 points 
    39338 correlation = 0.5875, correlation about mean = 0.1014, overlap = 144.9 
    39339 steps = 172, shift = 17.3, angle = 11.8 degrees 
    39340  
    39341 Position of cryosparc_P126_J1449_008_volume_map_sharp.mrc (#36) relative to
    39342 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    39343 Matrix rotation and translation 
    39344 0.79251646 -0.60801798 0.04724189 243.68438170 
    39345 -0.60939626 -0.78655708 0.09982066 521.84571018 
    39346 -0.02353432 -0.10789854 -0.99388331 498.85499284 
    39347 Axis -0.94654323 0.32251585 -0.00628058 
    39348 Axis point 0.00000000 316.92705286 232.83595470 
    39349 Rotation angle (degrees) 173.70052777 
    39350 Shift along axis -65.48739144 
    39351  
    39352 
    39353 > select subtract #36
    39354 
    39355 Nothing selected 
    39356 
    39357 > hide #!36 models
    39358 
    39359 > show #!36 models
    39360 
    39361 > hide #!35 models
    39362 
    39363 > hide #!34 models
    39364 
    39365 > show #!34 models
    39366 
    39367 > hide #!34 models
    39368 
    39369 > show #!34 models
    39370 
    39371 > ui mousemode right "rotate selected models"
    39372 
    39373 > select add #36
    39374 
    39375 2 models selected 
    39376 
    39377 > view matrix models
    39378 > #36,0.98096,-0.19407,-0.0076419,185.28,-0.19361,-0.98023,0.040778,563.9,-0.015405,-0.038522,-0.99914,559.02
    39379 
    39380 > fitmap #36 inMap #34
    39381 
    39382 Fit map cryosparc_P126_J1449_008_volume_map_sharp.mrc in map
    39383 relion_locres_filtered_20240326_GT.mrc using 137972 points 
    39384 correlation = 0.6115, correlation about mean = 0.08318, overlap = 167.7 
    39385 steps = 96, shift = 8.76, angle = 3.55 degrees 
    39386  
    39387 Position of cryosparc_P126_J1449_008_volume_map_sharp.mrc (#36) relative to
    39388 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    39389 Matrix rotation and translation 
    39390 0.96606437 -0.25727564 0.02299707 141.59744497 
    39391 -0.25752745 -0.96623177 0.00870514 506.06574925 
    39392 0.01998088 -0.01433210 -0.99969763 472.20508693 
    39393 Axis -0.99147951 0.12981117 -0.01083724 
    39394 Axis point 0.00000000 263.68309230 233.81583547 
    39395 Rotation angle (degrees) 179.33434506 
    39396 Shift along axis -79.81537680 
    39397  
    39398 
    39399 > view matrix models
    39400 > #36,0.95194,-0.28838,-0.10317,245.09,-0.29527,-0.9536,-0.058901,604.59,-0.081399,0.086533,-0.99292,546.63
    39401 
    39402 > fitmap #36 inMap #34
    39403 
    39404 Fit map cryosparc_P126_J1449_008_volume_map_sharp.mrc in map
    39405 relion_locres_filtered_20240326_GT.mrc using 137972 points 
    39406 correlation = 0.7137, correlation about mean = 0.2763, overlap = 246.1 
    39407 steps = 224, shift = 7.84, angle = 8.39 degrees 
    39408  
    39409 Position of cryosparc_P126_J1449_008_volume_map_sharp.mrc (#36) relative to
    39410 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    39411 Matrix rotation and translation 
    39412 0.96625519 -0.25688299 0.01902743 148.49020627 
    39413 -0.25700032 -0.96640321 0.00395959 513.54756791 
    39414 0.01737102 -0.00871603 -0.99981112 475.85913570 
    39415 Axis -0.99152782 0.12956988 -0.00917755 
    39416 Axis point 0.00000000 267.24157646 236.39693055 
    39417 Rotation angle (degrees) 179.63376510 
    39418 Shift along axis -85.05909744 
    39419  
    39420 
    39421 > select subtract #36
    39422 
    39423 Nothing selected 
    39424 
    39425 > hide #!34 models
    39426 
    39427 > volume #36 step 1
    39428 
    39429 > volume #36 level 0.2273
    39430 
    39431 > hide #!36 models
    39432 
    39433 > show #!34 models
    39434 
    39435 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    39436 > dataset/Chimera sessions/20240326_leaf_fitting_v15.cxs"
    39437 
    39438 > show #!36 models
    39439 
    39440 > hide #!34 models
    39441 
    39442 > show #!34 models
    39443 
    39444 > hide #!34 models
    39445 
    39446 > show #!34 models
    39447 
    39448 > hide #!36 models
    39449 
    39450 > show #!36 models
    39451 
    39452 > hide #!34 models
    39453 
    39454 > show #!34 models
    39455 
    39456 > hide #!34 models
    39457 
    39458 > show #!34 models
    39459 
    39460 > hide #!36 models
    39461 
    39462 > show #!36 models
    39463 
    39464 > hide #!36 models
    39465 
    39466 > show #!35 models
    39467 
    39468 > hide #!34 models
    39469 
    39470 > hide #!35 models
    39471 
    39472 > show #!36 models
    39473 
    39474 > hide #!36 models
    39475 
    39476 > show #!34 models
    39477 
    39478 > show #!1 models
    39479 
    39480 > hide #!34 models
    39481 
    39482 > hide #!1 models
    39483 
    39484 > show #!34 models
    39485 
    39486 > show #7 models
    39487 
    39488 > show #3 models
    39489 
    39490 > hide #3 models
    39491 
    39492 > show #3 models
    39493 
    39494 > hide #25.1 models
    39495 
    39496 > show #25.1 models
    39497 
    39498 > hide #25.1 models
    39499 
    39500 > hide #5 models
    39501 
    39502 > show #25.5 models
    39503 
    39504 > hide #25.5 models
    39505 
    39506 > show #!26.1 models
    39507 
    39508 > hide #!26.1 models
    39509 
    39510 > show #25.5 models
    39511 
    39512 > show #5 models
    39513 
    39514 > hide #5 models
    39515 
    39516 > show #5 models
    39517 
    39518 > hide #5 models
    39519 
    39520 > show #5 models
    39521 
    39522 > hide #5 models
    39523 
    39524 > show #5 models
    39525 
    39526 > hide #5 models
    39527 
    39528 > show #5 models
    39529 
    39530 > hide #25.5 models
    39531 
    39532 > show #6 models
    39533 
    39534 > hide #6 models
    39535 
    39536 > show #6 models
    39537 
    39538 > hide #6 models
    39539 
    39540 > show #25.5 models
    39541 
    39542 > hide #25.5 models
    39543 
    39544 > show #25.5 models
    39545 
    39546 > hide #25.5 models
    39547 
    39548 > show #25.5 models
    39549 
    39550 > select add #25.5
    39551 
    39552 635 atoms, 634 bonds, 159 residues, 1 model selected 
    39553 
    39554 > hide #!34 models
    39555 
    39556 > ui mousemode right "translate selected models"
    39557 
    39558 > view matrix models
    39559 > #25.5,-0.73604,0.4305,0.52241,305.27,-0.38361,-0.90111,0.20209,413.36,0.55775,-0.051653,0.8284,142.68
    39560 
    39561 > view matrix models
    39562 > #25.5,-0.73604,0.4305,0.52241,304.13,-0.38361,-0.90111,0.20209,415.06,0.55775,-0.051653,0.8284,144.4
    39563 
    39564 > ui tool show Matchmaker
    39565 
    39566 > matchmaker #25.5 to #5
    39567 
    39568 Parameters 
    39569 --- 
    39570 Chain pairing | bb 
    39571 Alignment algorithm | Needleman-Wunsch 
    39572 Similarity matrix | BLOSUM-62 
    39573 SS fraction | 0.3 
    39574 Gap open (HH/SS/other) | 18/18/6 
    39575 Gap extend | 1 
    39576 SS matrix |  |  | H | S | O 
    39577 ---|---|---|--- 
    39578 H | 6 | -9 | -6 
    39579 S |  | 6 | -6 
    39580 O |  |  | 4 
    39581 Iteration cutoff | 2 
    39582  
    39583 Matchmaker hArf1_P84078, chain A (#5) with 5nzr_COPI_coat_leaf_2017.cif F,
    39584 chain F (#25.5), sequence alignment score = 612.9 
    39585 RMSD between 91 pruned atom pairs is 1.407 angstroms; (across all 159 pairs:
    39586 2.595) 
    39587  
    39588 
    39589 > select subtract #25.5
    39590 
    39591 Nothing selected 
    39592 
    39593 > show #!34 models
    39594 
    39595 > hide #5 models
    39596 
    39597 > hide #7 models
    39598 
    39599 > show #11 models
    39600 
    39601 > volume #34 level 0.007041
    39602 
    39603 > combine 25.5
    39604 
    39605 Expected a keyword 
    39606 
    39607 > combine #25.5
    39608 
    39609 > select add #37
    39610 
    39611 635 atoms, 634 bonds, 159 residues, 1 model selected 
    39612 
    39613 > view matrix models
    39614 > #37,-0.53385,0.84429,0.046635,295.94,-0.84212,-0.53584,0.060952,498.92,0.07645,-0.0067325,0.99705,172.15
    39615 
    39616 > view matrix models
    39617 > #37,-0.53385,0.84429,0.046635,290.65,-0.84212,-0.53584,0.060952,517.84,0.07645,-0.0067325,0.99705,203.74
    39618 
    39619 > view matrix models
    39620 > #37,-0.53385,0.84429,0.046635,286.69,-0.84212,-0.53584,0.060952,511.7,0.07645,-0.0067325,0.99705,210.47
    39621 
    39622 > view matrix models
    39623 > #37,-0.53385,0.84429,0.046635,288.46,-0.84212,-0.53584,0.060952,513.92,0.07645,-0.0067325,0.99705,208.92
    39624 
    39625 > ui mousemode right "rotate selected models"
    39626 
    39627 > view matrix models
    39628 > #37,-0.26547,0.96403,-0.013259,241.37,-0.93121,-0.25282,0.26256,499.47,0.24976,0.082049,0.96482,177.44
    39629 
    39630 > view matrix models
    39631 > #37,-0.42633,0.87802,-0.21753,287,-0.89277,-0.3697,0.25746,499.75,0.14563,0.30397,0.94148,184.39
    39632 
    39633 > view matrix models
    39634 > #37,0.013244,0.89027,0.45525,166.47,-0.96278,-0.11157,0.2462,498.21,0.26997,-0.44156,0.85565,210.01
    39635 
    39636 > view matrix models
    39637 > #37,0.43692,0.89657,0.072551,121.99,-0.60427,0.23282,0.76201,384.07,0.6663,-0.37678,0.64349,155.11
    39638 
    39639 > view matrix models
    39640 > #37,-0.17109,0.95269,-0.25123,242.73,-0.52973,0.12605,0.83875,372.12,0.83073,0.27659,0.4831,103.39
    39641 
    39642 > view matrix models
    39643 > #37,-0.33767,0.94126,-0.00037941,253.75,-0.6278,-0.22492,0.74517,413.97,0.70132,0.25186,0.66687,113.58
    39644 
    39645 > view matrix models
    39646 > #37,-0.13258,0.98137,-0.13904,226.98,-0.57174,0.038867,0.81951,385.18,0.80965,0.18814,0.55594,106.65
    39647 
    39648 > view matrix models
    39649 > #37,-0.34901,0.8952,-0.27716,277.3,-0.5072,0.068249,0.85912,370.08,0.788,0.44042,0.43022,105.29
    39650 
    39651 > view matrix models
    39652 > #37,-0.34953,0.91197,-0.21482,272.16,-0.52792,-0.0022859,0.84929,378.04,0.77403,0.41026,0.48224,105.65
    39653 
    39654 > view matrix models
    39655 > #37,-0.23498,0.91143,-0.33776,261.6,-0.48984,0.1891,0.85106,361.2,0.83955,0.36543,0.40202,102.71
    39656 
    39657 > ui mousemode right "translate selected models"
    39658 
    39659 > view matrix models
    39660 > #37,-0.23498,0.91143,-0.33776,260.26,-0.48984,0.1891,0.85106,366.99,0.83955,0.36543,0.40202,106.91
    39661 
    39662 > ui mousemode right "rotate selected models"
    39663 
    39664 > view matrix models
    39665 > #37,-0.14164,0.96699,-0.21183,232.97,-0.55666,0.099149,0.82481,384.82,0.81858,0.23475,0.52424,109.03
    39666 
    39667 > view matrix models
    39668 > #37,0.23062,0.55681,-0.79798,233.72,-0.082745,0.82834,0.55408,285.02,0.96952,-0.061755,0.23711,119.81
    39669 
    39670 > view matrix models
    39671 > #37,-0.41519,0.77847,-0.47075,306.72,-0.24849,0.40074,0.88185,313.15,0.87514,0.48311,0.027061,120.55
    39672 
    39673 > view matrix models
    39674 > #37,-0.54808,0.83523,-0.044679,296.3,-0.3291,-0.16623,0.92955,354.02,0.76896,0.52417,0.36598,112.57
    39675 
    39676 > view matrix models
    39677 > #37,-0.22731,0.97035,-0.0822,238.1,-0.36299,-0.006099,0.93177,350.83,0.90364,0.24164,0.35361,106.28
    39678 
    39679 > ui mousemode right "translate selected models"
    39680 
    39681 > view matrix models
    39682 > #37,-0.22731,0.97035,-0.0822,237.53,-0.36299,-0.006099,0.93177,348.3,0.90364,0.24164,0.35361,106.02
    39683 
    39684 > ui mousemode right "rotate selected models"
    39685 
    39686 > view matrix models
    39687 > #37,-0.26817,0.94765,-0.17333,251.88,-0.31325,0.084372,0.94592,334.12,0.91102,0.30796,0.27422,106.69
    39688 
    39689 > view matrix models
    39690 > #37,-0.29695,0.94968,-0.09959,251.47,-0.34179,-0.0083276,0.93974,344.34,0.89162,0.3131,0.32707,105.99
    39691 
    39692 > view matrix models
    39693 > #37,-0.2546,0.96317,-0.086493,242.77,-0.35326,-0.0093715,0.93548,346.6,0.90022,0.26873,0.34263,105.88
    39694 
    39695 > ui tool show "Fit in Map"
    39696 
    39697 > fitmap #37 inMap #34
    39698 
    39699 Fit molecule copy of 5nzr_COPI_coat_leaf_2017.cif F (#37) to map
    39700 relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms 
    39701 average map value = 0.009537, steps = 64 
    39702 shifted from previous position = 3.04 
    39703 rotated from previous position = 26.7 degrees 
    39704 atoms outside contour = 177, contour level = 0.0070409 
    39705  
    39706 Position of copy of 5nzr_COPI_coat_leaf_2017.cif F (#37) relative to
    39707 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    39708 Matrix rotation and translation 
    39709 0.03518402 0.96625924 0.25515711 108.12871839 
    39710 -0.42593365 -0.21646744 0.87847729 296.68750822 
    39711 0.90407002 -0.13958836 0.40394614 42.99047607 
    39712 Axis -0.55246929 -0.35214277 -0.75549530 
    39713 Axis point 138.21037911 138.56100197 0.00000000 
    39714 Rotation angle (degrees) 112.87168388 
    39715 Shift along axis -196.69325894 
    39716  
    39717 
    39718 > fitmap #37 inMap #34
    39719 
    39720 Fit molecule copy of 5nzr_COPI_coat_leaf_2017.cif F (#37) to map
    39721 relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms 
    39722 average map value = 0.009537, steps = 36 
    39723 shifted from previous position = 0.00551 
    39724 rotated from previous position = 0.0232 degrees 
    39725 atoms outside contour = 177, contour level = 0.0070409 
    39726  
    39727 Position of copy of 5nzr_COPI_coat_leaf_2017.cif F (#37) relative to
    39728 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    39729 Matrix rotation and translation 
    39730 0.03479145 0.96629551 0.25507356 108.20209154 
    39731 -0.42596846 -0.21654561 0.87844115 296.70286695 
    39732 0.90406881 -0.13921553 0.40407747 42.96077084 
    39733 Axis -0.55229028 -0.35221482 -0.75559259 
    39734 Axis point 138.22815027 138.53430087 0.00000000 
    39735 Rotation angle (degrees) 112.88223694 
    39736 Shift along axis -196.72295138 
    39737  
    39738 
    39739 > fitmap #37 inMap #34
    39740 
    39741 Fit molecule copy of 5nzr_COPI_coat_leaf_2017.cif F (#37) to map
    39742 relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms 
    39743 average map value = 0.009537, steps = 28 
    39744 shifted from previous position = 0.02 
    39745 rotated from previous position = 0.0771 degrees 
    39746 atoms outside contour = 177, contour level = 0.0070409 
    39747  
    39748 Position of copy of 5nzr_COPI_coat_leaf_2017.cif F (#37) relative to
    39749 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    39750 Matrix rotation and translation 
    39751 0.03361578 0.96619871 0.25559736 108.38398615 
    39752 -0.42634764 -0.21744143 0.87803582 296.85028859 
    39753 0.90393454 -0.13848919 0.40462708 42.90508381 
    39754 Axis -0.55186871 -0.35198052 -0.75600968 
    39755 Axis point 138.29837629 138.51992435 0.00000000 
    39756 Rotation angle (degrees) 112.92956801 
    39757 Shift along axis -196.73590871 
    39758  
    39759 
    39760 > fitmap #37 inMap #34
    39761 
    39762 Fit molecule copy of 5nzr_COPI_coat_leaf_2017.cif F (#37) to map
    39763 relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms 
    39764 average map value = 0.009537, steps = 48 
    39765 shifted from previous position = 0.0285 
    39766 rotated from previous position = 0.113 degrees 
    39767 atoms outside contour = 177, contour level = 0.0070409 
    39768  
    39769 Position of copy of 5nzr_COPI_coat_leaf_2017.cif F (#37) relative to
    39770 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    39771 Matrix rotation and translation 
    39772 0.03541471 0.96631473 0.25491495 108.10128492 
    39773 -0.42588964 -0.21616037 0.87857424 296.65613018 
    39774 0.90408174 -0.13968009 0.40388818 42.99770199 
    39775 Axis -0.55251102 -0.35224187 -0.75541859 
    39776 Axis point 138.20573010 138.55793198 0.00000000 
    39777 Rotation angle (degrees) 112.85676625 
    39778 Shift along axis -196.70312278 
    39779  
    39780 
    39781 > fitmap #37 inMap #34
    39782 
    39783 Fit molecule copy of 5nzr_COPI_coat_leaf_2017.cif F (#37) to map
    39784 relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms 
    39785 average map value = 0.009537, steps = 28 
    39786 shifted from previous position = 0.032 
    39787 rotated from previous position = 0.0961 degrees 
    39788 atoms outside contour = 177, contour level = 0.0070409 
    39789  
    39790 Position of copy of 5nzr_COPI_coat_leaf_2017.cif F (#37) relative to
    39791 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    39792 Matrix rotation and translation 
    39793 0.03392899 0.96620039 0.25554965 108.33940231 
    39794 -0.42632747 -0.21727376 0.87808712 296.83434701 
    39795 0.90393235 -0.13874044 0.40454589 42.92792536 
    39796 Axis -0.55198231 -0.35197294 -0.75593028 
    39797 Axis point 138.29150050 138.53365427 0.00000000 
    39798 Rotation angle (degrees) 112.91713633 
    39799 Shift along axis -196.72960858 
    39800  
    39801 
    39802 > select subtract #37
    39803 
    39804 Nothing selected 
    39805 
    39806 > show #!2 models
    39807 
    39808 > hide #!34 models
    39809 
    39810 > volume #2 level 0.1233
    39811 
    39812 > show #!34 models
    39813 
    39814 > volume #2 level 0.09309
    39815 
    39816 > ui mousemode right label
    39817 
    39818 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    39819 > dataset/Chimera sessions/20240326_leaf_fitting_v16.cxs"
    39820 
    39821 > hide #!34 models
    39822 
    39823 > hide #!2 models
    39824 
    39825 > show #!35 models
    39826 
    39827 > hide #!35 models
    39828 
    39829 > show #!36 models
    39830 
    39831 > hide #!36 models
    39832 
    39833 > show #!34 models
    39834 
    39835 > hide #!34 models
    39836 
    39837 > show #!34 models
    39838 
    39839 > show #!30 models
    39840 
    39841 > hide #!30 models
    39842 
    39843 > hide #3 models
    39844 
    39845 > show #3 models
    39846 
    39847 > show #!2 models
    39848 
    39849 > volume #2 level 0.1866
    39850 
    39851 > hide #!2 models
    39852 
    39853 > hide #3 models
    39854 
    39855 > hide #11 models
    39856 
    39857 > hide #24 models
    39858 
    39859 > show #24 models
    39860 
    39861 > hide #!25.2 models
    39862 
    39863 > show #!25.2 models
    39864 
    39865 > hide #25.3 models
    39866 
    39867 > show #25.3 models
    39868 
    39869 > hide #!25.4 models
    39870 
    39871 > show #!25.4 models
    39872 
    39873 > hide #25.5 models
    39874 
    39875 > show #25.5 models
    39876 
    39877 > hide #25.5 models
    39878 
    39879 > show #25.5 models
    39880 
    39881 > hide #!25.6 models
    39882 
    39883 > show #!25.6 models
    39884 
    39885 > hide #!25.7 models
    39886 
    39887 > show #!25.7 models
    39888 
    39889 > hide #25.8 models
    39890 
    39891 > show #25.8 models
    39892 
    39893 > hide #25.9 models
    39894 
    39895 > show #25.9 models
    39896 
    39897 > hide #25.10 models
    39898 
    39899 > show #25.10 models
    39900 
    39901 > show #!26.1 models
    39902 
    39903 > hide #!26.1 models
    39904 
    39905 > show #!26.2 models
    39906 
    39907 > hide #!25.6 models
    39908 
    39909 > show #!25.6 models
    39910 
    39911 > hide #!25.6 models
    39912 
    39913 > show #!25.6 models
    39914 
    39915 > hide #!26.2 models
    39916 
    39917 > show #!26.2 models
    39918 
    39919 > hide #!26.2 models
    39920 
    39921 > show #29 models
    39922 
    39923 > hide #29 models
    39924 
    39925 > show #29 models
    39926 
    39927 > hide #29 models
    39928 
    39929 > hide #37 models
    39930 
    39931 > show #37 models
    39932 
    39933 > hide #37 models
    39934 
    39935 > show #37 models
    39936 
    39937 > show #!26.2 models
    39938 
    39939 > hide #!26.2 models
    39940 
    39941 > show #!26.2 models
    39942 
    39943 > hide #!26.2 models
    39944 
    39945 > hide #25.3 models
    39946 
    39947 > show #25.3 models
    39948 
    39949 > show #25.1 models
    39950 
    39951 > show #!30 models
    39952 
    39953 > show #28.2 models
    39954 
    39955 > show #27.2 models
    39956 
    39957 > hide #25.1 models
    39958 
    39959 > show #25.1 models
    39960 
    39961 > hide #25.1 models
    39962 
    39963 > volume #34 level 0.005256
    39964 
    39965 > volume #34 level 0.006446
    39966 
    39967 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    39968 > dataset/Chimera sessions/20240328_leaf_fitting_v17.cxs"
    39969 
    39970 ——— End of log from Fri Mar 29 15:25:34 2024 ———
    39971 
    39972 opened ChimeraX session 
    39973 
    39974 > show #!26.1 models
    39975 
    39976 > hide #!26.1 models
    39977 
    39978 > show #!26.1 models
    39979 
    39980 > hide #!26.1 models
    39981 
    39982 > hide #37 models
    39983 
    39984 > show #37 models
    39985 
    39986 > hide #37 models
    39987 
    39988 > show #37 models
    39989 
    39990 > hide #37 models
    39991 
    39992 > show #!26.1 models
    39993 
    39994 > hide #!26.1 models
    39995 
    39996 > show #!26.1 models
    39997 
    39998 > hide #!26.1 models
    39999 
    40000 > hide #25.5 models
    40001 
    40002 > show #25.5 models
    40003 
    40004 > hide #25.5 models
    40005 
    40006 > hide #25.9 models
    40007 
    40008 > show #25.9 models
    40009 
    40010 > show #25.5 models
    40011 
    40012 > hide #25.10 models
    40013 
    40014 > show #25.10 models
    40015 
    40016 > hide #25.10 models
    40017 
    40018 > ui tool show Matchmaker
    40019 
    40020 > show #25.10 models
    40021 
    40022 > show #!26.1 models
    40023 
    40024 > matchmaker #!26.1 to #25.10
    40025 
    40026 Parameters 
    40027 --- 
    40028 Chain pairing | bb 
    40029 Alignment algorithm | Needleman-Wunsch 
    40030 Similarity matrix | BLOSUM-62 
    40031 SS fraction | 0.3 
    40032 Gap open (HH/SS/other) | 18/18/6 
    40033 Gap extend | 1 
    40034 SS matrix |  |  | H | S | O 
    40035 ---|---|---|--- 
    40036 H | 6 | -9 | -6 
    40037 S |  | 6 | -6 
    40038 O |  |  | 4 
    40039 Iteration cutoff | 2 
    40040  
    40041 Matchmaker 5nzr_COPI_coat_leaf_2017.cif R, chain R (#25.10) with
    40042 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#26.1), sequence alignment
    40043 score = 773.4 
    40044 RMSD between 92 pruned atom pairs is 1.282 angstroms; (across all 159 pairs:
    40045 2.182) 
    40046  
    40047 
    40048 > hide #!34 models
    40049 
    40050 > matchmaker #!26.1 to #25.10
    40051 
    40052 Parameters 
    40053 --- 
    40054 Chain pairing | bb 
    40055 Alignment algorithm | Needleman-Wunsch 
    40056 Similarity matrix | BLOSUM-62 
    40057 SS fraction | 0.3 
    40058 Gap open (HH/SS/other) | 18/18/6 
    40059 Gap extend | 1 
    40060 SS matrix |  |  | H | S | O 
    40061 ---|---|---|--- 
    40062 H | 6 | -9 | -6 
    40063 S |  | 6 | -6 
    40064 O |  |  | 4 
    40065 Iteration cutoff | 2 
    40066  
    40067 Matchmaker 5nzr_COPI_coat_leaf_2017.cif R, chain R (#25.10) with
    40068 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#26.1), sequence alignment
    40069 score = 773.4 
    40070 RMSD between 92 pruned atom pairs is 1.282 angstroms; (across all 159 pairs:
    40071 2.182) 
    40072  
    40073 
    40074 > show #!34 models
    40075 
    40076 > hide #!34 models
    40077 
    40078 > ui tool show "Fit in Map"
    40079 
    40080 > show #!34 models
    40081 
    40082 > fitmap #26.1 inMap #34
    40083 
    40084 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#26.1) to map
    40085 relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms 
    40086 average map value = 0.008909, steps = 64 
    40087 shifted from previous position = 0.77 
    40088 rotated from previous position = 4.16 degrees 
    40089 atoms outside contour = 520, contour level = 0.0064458 
    40090  
    40091 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#26.1) relative to
    40092 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40093 Matrix rotation and translation 
    40094 -0.21066750 0.17815726 -0.96118634 330.74516316 
    40095 0.67347295 0.73913574 -0.01060821 309.91319893 
    40096 0.70855725 -0.64956781 -0.27569598 215.29865366 
    40097 Axis -0.34442130 -0.90004949 0.26699227 
    40098 Axis point -8.28188363 0.00000000 234.35961275 
    40099 Rotation angle (degrees) 111.93866769 
    40100 Shift along axis -335.36982072 
    40101  
    40102 
    40103 > fitmap #26.1 inMap #34
    40104 
    40105 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#26.1) to map
    40106 relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms 
    40107 average map value = 0.008909, steps = 48 
    40108 shifted from previous position = 0.0112 
    40109 rotated from previous position = 0.076 degrees 
    40110 atoms outside contour = 521, contour level = 0.0064458 
    40111  
    40112 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#26.1) relative to
    40113 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40114 Matrix rotation and translation 
    40115 -0.21042678 0.17939235 -0.96100934 330.82665780 
    40116 0.67396729 0.73869774 -0.00968153 309.88279527 
    40117 0.70815863 -0.64972612 -0.27634636 215.29149740 
    40118 Axis -0.34506970 -0.89990494 0.26664209 
    40119 Axis point -8.29655738 0.00000000 234.18876552 
    40120 Rotation angle (degrees) 111.96484961 
    40121 Shift along axis -335.61753797 
    40122  
    40123 
    40124 > fitmap #25.10 inMap #34
    40125 
    40126 Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map
    40127 relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms 
    40128 average map value = 0.01241, steps = 96 
    40129 shifted from previous position = 0.00308 
    40130 rotated from previous position = 0.0115 degrees 
    40131 atoms outside contour = 130, contour level = 0.0064458 
    40132  
    40133 Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to
    40134 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40135 Matrix rotation and translation 
    40136 -0.57911686 0.81426097 -0.04003396 223.95598831 
    40137 -0.80964168 -0.58019030 -0.08865414 418.66731589 
    40138 -0.09541493 -0.01892795 0.99525761 159.85096414 
    40139 Axis 0.04287302 0.03405247 -0.99850004 
    40140 Axis point 224.36012870 152.91748322 0.00000000 
    40141 Rotation angle (degrees) 125.59308112 
    40142 Shift along axis -135.75286879 
    40143  
    40144 
    40145 > fitmap #25.10 inMap #34
    40146 
    40147 Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map
    40148 relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms 
    40149 average map value = 0.01241, steps = 48 
    40150 shifted from previous position = 0.00482 
    40151 rotated from previous position = 0.0724 degrees 
    40152 atoms outside contour = 131, contour level = 0.0064458 
    40153  
    40154 Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to
    40155 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40156 Matrix rotation and translation 
    40157 -0.57945185 0.81399028 -0.04068608 224.09024031 
    40158 -0.80945482 -0.58060406 -0.08764597 418.62233634 
    40159 -0.09496547 -0.01785308 0.99532046 159.62444397 
    40160 Axis 0.04292699 0.03338522 -0.99852026 
    40161 Axis point 224.33339427 152.83275015 0.00000000 
    40162 Rotation angle (degrees) 125.61724891 
    40163 Shift along axis -135.79292122 
    40164  
    40165 
    40166 > fitmap #25.10 inMap #34
    40167 
    40168 Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map
    40169 relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms 
    40170 average map value = 0.0124, steps = 144 
    40171 shifted from previous position = 0.0166 
    40172 rotated from previous position = 0.048 degrees 
    40173 atoms outside contour = 131, contour level = 0.0064458 
    40174  
    40175 Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to
    40176 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40177 Matrix rotation and translation 
    40178 -0.57930230 0.81411152 -0.04038906 224.03717989 
    40179 -0.80950866 -0.58041314 -0.08840991 418.66371837 
    40180 -0.09541787 -0.01852077 0.99526499 159.78590532 
    40181 Axis 0.04298079 0.03384191 -0.99850257 
    40182 Axis point 224.36632488 152.89118575 0.00000000 
    40183 Rotation angle (degrees) 125.60720577 
    40184 Shift along axis -135.74896084 
    40185  
    40186 
    40187 > hide #!34 models
    40188 
    40189 > select add #25.10
    40190 
    40191 635 atoms, 634 bonds, 159 residues, 1 model selected 
    40192 
    40193 > select subtract #25.10
    40194 
    40195 Nothing selected 
    40196 
    40197 > select add #25.10
    40198 
    40199 635 atoms, 634 bonds, 159 residues, 1 model selected 
    40200 
    40201 > select subtract #25.10
    40202 
    40203 Nothing selected 
    40204 
    40205 > select add #26.1
    40206 
    40207 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected 
    40208 
    40209 > show #!34 models
    40210 
    40211 > select subtract #26.1
    40212 
    40213 Nothing selected 
    40214 
    40215 > select add #26.1
    40216 
    40217 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected 
    40218 
    40219 > select subtract #26.1
    40220 
    40221 Nothing selected 
    40222 
    40223 > hide #25.10 models
    40224 
    40225 > show #25.10 models
    40226 
    40227 > show #6 models
    40228 
    40229 > hide #6 models
    40230 
    40231 > show #5 models
    40232 
    40233 > hide #5 models
    40234 
    40235 > hide #!26.1 models
    40236 
    40237 > show #!26.1 models
    40238 
    40239 > hide #!26.1 models
    40240 
    40241 > show #!26.1 models
    40242 
    40243 > hide #!26.1 models
    40244 
    40245 > hide #25.10 models
    40246 
    40247 > show #25.10 models
    40248 
    40249 > select add #25.10
    40250 
    40251 635 atoms, 634 bonds, 159 residues, 1 model selected 
    40252 
    40253 > ui mousemode right "translate selected models"
    40254 
    40255 > view matrix models
    40256 > #25.10,-0.56979,0.82111,-0.033523,282.49,-0.81565,-0.57004,-0.098854,495.12,-0.10028,-0.028983,0.99454,238.05
    40257 
    40258 > view matrix models
    40259 > #25.10,-0.56979,0.82111,-0.033523,282.64,-0.81565,-0.57004,-0.098854,495.27,-0.10028,-0.028983,0.99454,237.65
    40260 
    40261 > fitmap #25.10 inMap #34
    40262 
    40263 Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map
    40264 relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms 
    40265 average map value = 0.01241, steps = 108 
    40266 shifted from previous position = 1.77 
    40267 rotated from previous position = 0.0348 degrees 
    40268 atoms outside contour = 131, contour level = 0.0064458 
    40269  
    40270 Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to
    40271 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40272 Matrix rotation and translation 
    40273 -0.57967028 0.81383264 -0.04072810 224.15941597 
    40274 -0.80924405 -0.58081542 -0.08819020 418.69178013 
    40275 -0.09542757 -0.01816226 0.99527067 159.71116751 
    40276 Axis 0.04308066 0.03365071 -0.99850473 
    40277 Axis point 224.37093318 152.88832243 0.00000000 
    40278 Rotation angle (degrees) 125.63415139 
    40279 Shift along axis -135.72614414 
    40280  
    40281 
    40282 > view matrix models
    40283 > #25.10,-0.57016,0.82084,-0.033865,283.15,-0.81539,-0.57045,-0.098639,495.39,-0.10028,-0.028627,0.99455,238.98
    40284 
    40285 > fitmap #25.10 inMap #34
    40286 
    40287 Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map
    40288 relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms 
    40289 average map value = 0.0124, steps = 84 
    40290 shifted from previous position = 1.46 
    40291 rotated from previous position = 0.0732 degrees 
    40292 atoms outside contour = 131, contour level = 0.0064458 
    40293  
    40294 Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to
    40295 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40296 Matrix rotation and translation 
    40297 -0.57882830 0.81445493 -0.04026116 223.92057802 
    40298 -0.80981808 -0.57992238 -0.08879576 418.64146532 
    40299 -0.09566850 -0.01879328 0.99523582 159.85012424 
    40300 Axis 0.04303278 0.03406067 -0.99849289 
    40301 Axis point 224.39333634 152.88484856 0.00000000 
    40302 Rotation angle (degrees) 125.57424627 
    40303 Shift along axis -135.71407959 
    40304  
    40305 
    40306 > select subtract #25.10
    40307 
    40308 Nothing selected 
    40309 
    40310 > show #!26.1 models
    40311 
    40312 > select add #26.1
    40313 
    40314 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected 
    40315 
    40316 > view matrix models
    40317 > #26.1,-0.21464,0.16647,-0.9624,392.75,0.66418,0.74733,-0.01886,385.5,0.71609,-0.64326,-0.27097,291.62
    40318 
    40319 > fitmap #25.10 inMap #34
    40320 
    40321 Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map
    40322 relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms 
    40323 average map value = 0.01241, steps = 80 
    40324 shifted from previous position = 0.0105 
    40325 rotated from previous position = 0.0343 degrees 
    40326 atoms outside contour = 130, contour level = 0.0064458 
    40327  
    40328 Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to
    40329 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40330 Matrix rotation and translation 
    40331 -0.57907990 0.81427973 -0.04018689 223.96868603 
    40332 -0.80969368 -0.58017522 -0.08827713 418.62684340 
    40333 -0.09519771 -0.01858044 0.99528496 159.77660424 
    40334 Axis 0.04285338 0.03382370 -0.99850866 
    40335 Axis point 224.35071346 152.87171941 0.00000000 
    40336 Rotation angle (degrees) 125.59028400 
    40337 Shift along axis -135.78100180 
    40338  
    40339 
    40340 > fitmap #25.10 inMap #34
    40341 
    40342 Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map
    40343 relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms 
    40344 average map value = 0.01241, steps = 92 
    40345 shifted from previous position = 0.0183 
    40346 rotated from previous position = 0.0696 degrees 
    40347 atoms outside contour = 132, contour level = 0.0064458 
    40348  
    40349 Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to
    40350 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40351 Matrix rotation and translation 
    40352 -0.57960053 0.81387247 -0.04092444 224.16631037 
    40353 -0.80934188 -0.58077628 -0.08754787 418.62643142 
    40354 -0.09502075 -0.01762093 0.99531932 159.58864347 
    40355 Axis 0.04301555 0.03327733 -0.99852005 
    40356 Axis point 224.34840220 152.81747393 0.00000000 
    40357 Rotation angle (degrees) 125.62859855 
    40358 Shift along axis -135.77905230 
    40359  
    40360 
    40361 > fitmap #25.10 inMap #34
    40362 
    40363 Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map
    40364 relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms 
    40365 average map value = 0.01241, steps = 112 
    40366 shifted from previous position = 0.0135 
    40367 rotated from previous position = 0.0187 degrees 
    40368 atoms outside contour = 131, contour level = 0.0064458 
    40369  
    40370 Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to
    40371 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40372 Matrix rotation and translation 
    40373 -0.57948580 0.81395203 -0.04096688 224.15145479 
    40374 -0.80939248 -0.58066095 -0.08784456 418.63117192 
    40375 -0.09528913 -0.01774640 0.99529143 159.63962880 
    40376 Axis 0.04311703 0.03341335 -0.99851113 
    40377 Axis point 224.37355418 152.82261696 0.00000000 
    40378 Rotation angle (degrees) 125.62147319 
    40379 Shift along axis -135.74933155 
    40380  
    40381 
    40382 > fitmap #25.10 inMap #34
    40383 
    40384 Fit molecule 5nzr_COPI_coat_leaf_2017.cif R (#25.10) to map
    40385 relion_locres_filtered_20240326_GT.mrc (#34) using 635 atoms 
    40386 average map value = 0.01241, steps = 124 
    40387 shifted from previous position = 0.0264 
    40388 rotated from previous position = 0.0176 degrees 
    40389 atoms outside contour = 131, contour level = 0.0064458 
    40390  
    40391 Position of 5nzr_COPI_coat_leaf_2017.cif R (#25.10) relative to
    40392 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40393 Matrix rotation and translation 
    40394 -0.57946360 0.81397614 -0.04080154 224.11340702 
    40395 -0.80944384 -0.58062769 -0.08759077 418.62341381 
    40396 -0.09498731 -0.01772911 0.99532059 159.61256565 
    40397 Axis 0.04296996 0.03332815 -0.99852031 
    40398 Axis point 224.34354252 152.82263380 0.00000000 
    40399 Rotation angle (degrees) 125.61849097 
    40400 Shift along axis -135.79430071 
    40401  
    40402 
    40403 > select subtract #26.1
    40404 
    40405 Nothing selected 
    40406 
    40407 > select add #26.1
    40408 
    40409 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected 
    40410 
    40411 > select subtract #26.1
    40412 
    40413 Nothing selected 
    40414 
    40415 > hide #25.10 models
    40416 
    40417 > hide #!26.1 models
    40418 
    40419 > show #!26.1 models
    40420 
    40421 > show #!26.2 models
    40422 
    40423 > hide #25.9 models
    40424 
    40425 > show #25.9 models
    40426 
    40427 > hide #!26.2 models
    40428 
    40429 > show #!26.2 models
    40430 
    40431 > hide #!26.2 models
    40432 
    40433 > show #!26.2 models
    40434 
    40435 > hide #!26.2 models
    40436 
    40437 > show #26.3 models
    40438 
    40439 > hide #26.3 models
    40440 
    40441 > show #26.3 models
    40442 
    40443 > hide #26.3 models
    40444 
    40445 > hide #!26.1 models
    40446 
    40447 > show #!26.1 models
    40448 
    40449 > show #!26.2 models
    40450 
    40451 > hide #!26.2 models
    40452 
    40453 > show #!26.2 models
    40454 
    40455 > fitmap #26.2 inMap #34
    40456 
    40457 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) to map
    40458 relion_locres_filtered_20240326_GT.mrc (#34) using 2069 atoms 
    40459 average map value = 0.01291, steps = 64 
    40460 shifted from previous position = 0.946 
    40461 rotated from previous position = 1.32 degrees 
    40462 atoms outside contour = 709, contour level = 0.0064458 
    40463  
    40464 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) relative to
    40465 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40466 Matrix rotation and translation 
    40467 -0.26676369 0.21060525 -0.94046933 331.59689306 
    40468 0.69716374 0.71593433 -0.03742646 310.02523477 
    40469 0.66543207 -0.66564514 -0.33781163 215.90163313 
    40470 Axis -0.35062015 -0.89628248 0.27155705 
    40471 Axis point -1.07432461 0.00000000 228.95265506 
    40472 Rotation angle (degrees) 116.37987233 
    40473 Shift along axis -335.50512764 
    40474  
    40475 
    40476 > hide #!25.7 models
    40477 
    40478 > show #!25.7 models
    40479 
    40480 > hide #!25.6 models
    40481 
    40482 > show #!25.6 models
    40483 
    40484 > hide #!25.6 models
    40485 
    40486 > show #!25.6 models
    40487 
    40488 > hide #!34 models
    40489 
    40490 > hide #!25.6 models
    40491 
    40492 > show #!25.6 models
    40493 
    40494 > hide #!25.6 models
    40495 
    40496 > show #!25.6 models
    40497 
    40498 > hide #!25.6 models
    40499 
    40500 > show #!25.6 models
    40501 
    40502 > hide #!25.6 models
    40503 
    40504 > show #!25.6 models
    40505 
    40506 > hide #!26.2 models
    40507 
    40508 > show #!26.2 models
    40509 
    40510 > hide #!26.2 models
    40511 
    40512 > show #!26.2 models
    40513 
    40514 > hide #!25.6 models
    40515 
    40516 > show #!25.6 models
    40517 
    40518 > fitmap #25.6 inMap #34
    40519 
    40520 Fit molecule 5nzr_COPI_coat_leaf_2017.cif G (#25.6) to map
    40521 relion_locres_filtered_20240326_GT.mrc (#34) using 3190 atoms 
    40522 average map value = 0.01344, steps = 60 
    40523 shifted from previous position = 0.0136 
    40524 rotated from previous position = 0.046 degrees 
    40525 atoms outside contour = 1426, contour level = 0.0064458 
    40526  
    40527 Position of 5nzr_COPI_coat_leaf_2017.cif G (#25.6) relative to
    40528 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40529 Matrix rotation and translation 
    40530 -0.57150051 0.81986359 -0.03479709 221.54415607 
    40531 -0.81986949 -0.57226792 -0.01798424 410.34012380 
    40532 -0.03465788 0.01825107 0.99923256 151.14400112 
    40533 Axis 0.02209290 -0.00008488 -0.99975592 
    40534 Axis point 219.47799700 146.52998535 0.00000000 
    40535 Rotation angle (degrees) 124.90852780 
    40536 Shift along axis -146.24738522 
    40537  
    40538 
    40539 > fitmap #25.6 inMap #34
    40540 
    40541 Fit molecule 5nzr_COPI_coat_leaf_2017.cif G (#25.6) to map
    40542 relion_locres_filtered_20240326_GT.mrc (#34) using 3190 atoms 
    40543 average map value = 0.01344, steps = 60 
    40544 shifted from previous position = 0.00946 
    40545 rotated from previous position = 0.0223 degrees 
    40546 atoms outside contour = 1426, contour level = 0.0064458 
    40547  
    40548 Position of 5nzr_COPI_coat_leaf_2017.cif G (#25.6) relative to
    40549 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40550 Matrix rotation and translation 
    40551 -0.57139144 0.81993964 -0.03479654 221.52527143 
    40552 -0.81995810 -0.57215219 -0.01762304 410.29097843 
    40553 -0.03435875 0.01846205 0.99923902 151.09642121 
    40554 Axis 0.02199915 -0.00026690 -0.99975795 
    40555 Axis point 219.45935637 146.48992317 0.00000000 
    40556 Rotation angle (degrees) 124.90044927 
    40557 Shift along axis -146.29598725 
    40558  
    40559 
    40560 > show #!34 models
    40561 
    40562 > hide #!26.2 models
    40563 
    40564 > show #!26.2 models
    40565 
    40566 > hide #!25.6 models
    40567 
    40568 > show #26.3 models
    40569 
    40570 > hide #26.3 models
    40571 
    40572 > hide #25.11 models
    40573 
    40574 > show #25.11 models
    40575 
    40576 > hide #!34 models
    40577 
    40578 > show #26.3 models
    40579 
    40580 > fitmap #26.3 inMap #34
    40581 
    40582 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) to map
    40583 relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms 
    40584 average map value = 0.01093, steps = 80 
    40585 shifted from previous position = 0.986 
    40586 rotated from previous position = 0.899 degrees 
    40587 atoms outside contour = 358, contour level = 0.0064458 
    40588  
    40589 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) relative to
    40590 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40591 Matrix rotation and translation 
    40592 -0.25043210 0.19248870 -0.94880549 329.67320722 
    40593 0.71012646 0.70264192 -0.04488574 309.43538649 
    40594 0.65803052 -0.68501271 -0.31265541 214.49028655 
    40595 Axis -0.35455348 -0.88999420 0.28670916 
    40596 Axis point -6.48640813 0.00000000 232.40025471 
    40597 Rotation angle (degrees) 115.48170033 
    40598 Shift along axis -330.78615344 
    40599  
    40600 
    40601 > fitmap #25.11 inMap #34
    40602 
    40603 Fit molecule 5nzr_COPI_coat_leaf_2017.cif Z (#25.11) to map
    40604 relion_locres_filtered_20240326_GT.mrc (#34) using 555 atoms 
    40605 average map value = 0.01758, steps = 44 
    40606 shifted from previous position = 0.00184 
    40607 rotated from previous position = 0.0428 degrees 
    40608 atoms outside contour = 19, contour level = 0.0064458 
    40609  
    40610 Position of 5nzr_COPI_coat_leaf_2017.cif Z (#25.11) relative to
    40611 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40612 Matrix rotation and translation 
    40613 -0.54660847 0.83480197 -0.06576359 221.78872090 
    40614 -0.83694728 -0.54718173 0.01055431 405.39457341 
    40615 -0.02717388 0.06080973 0.99777941 145.43800115 
    40616 Axis 0.03004001 -0.02306687 -0.99928250 
    40617 Axis point 221.76468855 139.85093267 0.00000000 
    40618 Rotation angle (degrees) 123.23028209 
    40619 Shift along axis -148.02229824 
    40620  
    40621 
    40622 > fitmap #25.11 inMap #34
    40623 
    40624 Fit molecule 5nzr_COPI_coat_leaf_2017.cif Z (#25.11) to map
    40625 relion_locres_filtered_20240326_GT.mrc (#34) using 555 atoms 
    40626 average map value = 0.01758, steps = 44 
    40627 shifted from previous position = 0.011 
    40628 rotated from previous position = 0.0592 degrees 
    40629 atoms outside contour = 19, contour level = 0.0064458 
    40630  
    40631 Position of 5nzr_COPI_coat_leaf_2017.cif Z (#25.11) relative to
    40632 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40633 Matrix rotation and translation 
    40634 -0.54623363 0.83511331 -0.06491964 221.64637607 
    40635 -0.83721609 -0.54676420 0.01086763 405.33329553 
    40636 -0.02642003 0.06028804 0.99783131 145.44742845 
    40637 Axis 0.02953112 -0.02300541 -0.99929909 
    40638 Axis point 221.70559607 139.84686651 0.00000000 
    40639 Rotation angle (degrees) 123.20137237 
    40640 Shift along axis -148.12487531 
    40641  
    40642 
    40643 > show #!34 models
    40644 
    40645 > hide #!2 models
    40646 
    40647 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    40648 > dataset/Chimera sessions/20240406_leaf_fitting_v18.cxs"
    40649 
    40650 > close #25.11
    40651 
    40652 > hide #!26.1 models
    40653 
    40654 > show #!26.1 models
    40655 
    40656 > hide #24 models
    40657 
    40658 > show #24 models
    40659 
    40660 > fitmap #24 inMap #34
    40661 
    40662 Fit molecule 3kn1_Golph3_xtal.cif (#24) to map
    40663 relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms 
    40664 average map value = 0.008452, steps = 44 
    40665 shifted from previous position = 0.0138 
    40666 rotated from previous position = 0.0468 degrees 
    40667 atoms outside contour = 729, contour level = 0.0064458 
    40668  
    40669 Position of 3kn1_Golph3_xtal.cif (#24) relative to
    40670 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40671 Matrix rotation and translation 
    40672 0.23357866 0.95002788 -0.20709425 197.36052025 
    40673 -0.00017108 -0.21294573 -0.97706401 258.07204149 
    40674 -0.97233789 0.22825674 -0.04957705 197.42047125 
    40675 Axis 0.70280508 0.44620249 -0.55404726 
    40676 Axis point 0.00000000 -45.38476117 254.49183049 
    40677 Rotation angle (degrees) 120.96217309 
    40678 Shift along axis 144.47809218 
    40679  
    40680 
    40681 > fitmap #24 inMap #34
    40682 
    40683 Fit molecule 3kn1_Golph3_xtal.cif (#24) to map
    40684 relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms 
    40685 average map value = 0.008452, steps = 48 
    40686 shifted from previous position = 0.0101 
    40687 rotated from previous position = 0.0527 degrees 
    40688 atoms outside contour = 727, contour level = 0.0064458 
    40689  
    40690 Position of 3kn1_Golph3_xtal.cif (#24) relative to
    40691 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40692 Matrix rotation and translation 
    40693 0.23410930 0.94979349 -0.20756967 197.35969318 
    40694 0.00022632 -0.21355609 -0.97693078 258.11291282 
    40695 -0.97221026 0.22866161 -0.05021043 197.38370379 
    40696 Axis 0.70313895 0.44596216 -0.55381708 
    40697 Axis point 0.00000000 -45.18462452 254.34379884 
    40698 Rotation angle (degrees) 120.98599951 
    40699 Shift along axis 144.56541288 
    40700  
    40701 
    40702 > hide #24 models
    40703 
    40704 > show #24 models
    40705 
    40706 > show #29 models
    40707 
    40708 > hide #29 models
    40709 
    40710 > show #29 models
    40711 
    40712 > hide #29 models
    40713 
    40714 > hide #26.3 models
    40715 
    40716 > show #26.3 models
    40717 
    40718 > hide #!26.2 models
    40719 
    40720 > show #!26.2 models
    40721 
    40722 > show #27.1 models
    40723 
    40724 > hide #25.3 models
    40725 
    40726 > hide #27.1 models
    40727 
    40728 > show #27.1 models
    40729 
    40730 > hide #27.1 models
    40731 
    40732 > show #27.1 models
    40733 
    40734 > fitmap #27.1 inMap #34
    40735 
    40736 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    40737 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    40738 average map value = 0.008658, steps = 44 
    40739 shifted from previous position = 0.0172 
    40740 rotated from previous position = 0.0592 degrees 
    40741 atoms outside contour = 2878, contour level = 0.0064458 
    40742  
    40743 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    40744 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40745 Matrix rotation and translation 
    40746 0.99798654 -0.02155831 0.05964989 -72.41704393 
    40747 0.02038086 0.99958663 0.02027796 -76.19302071 
    40748 -0.06006239 -0.01902141 0.99801337 -69.77541800 
    40749 Axis -0.29594138 0.90148559 0.31582026 
    40750 Axis point -847.94280840 0.00000000 1529.19268245 
    40751 Rotation angle (degrees) 3.80708140 
    40752 Shift along axis -69.29220064 
    40753  
    40754 
    40755 > fitmap #27.1 inMap #34
    40756 
    40757 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    40758 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    40759 average map value = 0.008658, steps = 48 
    40760 shifted from previous position = 0.0145 
    40761 rotated from previous position = 0.0556 degrees 
    40762 atoms outside contour = 2881, contour level = 0.0064458 
    40763  
    40764 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    40765 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40766 Matrix rotation and translation 
    40767 0.99803993 -0.02156149 0.05874854 -72.25761698 
    40768 0.02042215 0.99959287 0.01992550 -76.13165864 
    40769 -0.05915425 -0.01868667 0.99807394 -69.83557161 
    40770 Axis -0.29480439 0.90018934 0.32054566 
    40771 Axis point -853.82266054 0.00000000 1550.80156420 
    40772 Rotation angle (degrees) 3.75486000 
    40773 Shift along axis -69.61653459 
    40774  
    40775 
    40776 > select add #27.1
    40777 
    40778 6538 atoms, 6591 bonds, 911 residues, 1 model selected 
    40779 
    40780 > view matrix models
    40781 > #27.1,0.99735,-0.034033,0.064281,-7.3604,0.033414,0.99938,0.010672,1.0557,-0.064605,-0.0084954,0.99787,6.8613
    40782 
    40783 > fitmap #27.1 inMap #34
    40784 
    40785 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    40786 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    40787 average map value = 0.008658, steps = 68 
    40788 shifted from previous position = 2.62 
    40789 rotated from previous position = 0.0326 degrees 
    40790 atoms outside contour = 2881, contour level = 0.0064458 
    40791  
    40792 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    40793 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40794 Matrix rotation and translation 
    40795 0.99806168 -0.02186237 0.05826591 -72.14158603 
    40796 0.02073299 0.99958662 0.01991793 -76.13839887 
    40797 -0.05867728 -0.01867130 0.99810238 -69.85512230 
    40798 Axis -0.29614711 0.89746245 0.32689149 
    40799 Axis point -852.22850225 0.00000000 1564.57377379 
    40800 Rotation angle (degrees) 3.73558851 
    40801 Shift along axis -69.80187603 
    40802  
    40803 
    40804 > fitmap #27.1 inMap #34
    40805 
    40806 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    40807 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    40808 average map value = 0.008658, steps = 60 
    40809 shifted from previous position = 0.0033 
    40810 rotated from previous position = 0.02 degrees 
    40811 atoms outside contour = 2881, contour level = 0.0064458 
    40812  
    40813 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    40814 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40815 Matrix rotation and translation 
    40816 0.99808049 -0.02188794 0.05793316 -72.08240649 
    40817 0.02077044 0.99958776 0.01982188 -76.12395187 
    40818 -0.05834313 -0.01858053 0.99812366 -69.87297509 
    40819 Axis -0.29615184 0.89669995 0.32897309 
    40820 Axis point -854.08403980 0.00000000 1573.25797163 
    40821 Rotation angle (degrees) 3.71741809 
    40822 Shift along axis -69.89933488 
    40823  
    40824 
    40825 > fitmap #27.1 inMap #34
    40826 
    40827 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    40828 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    40829 average map value = 0.008658, steps = 48 
    40830 shifted from previous position = 0.0139 
    40831 rotated from previous position = 0.0534 degrees 
    40832 atoms outside contour = 2880, contour level = 0.0064458 
    40833  
    40834 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    40835 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40836 Matrix rotation and translation 
    40837 0.99803390 -0.02166884 0.05881153 -72.25698973 
    40838 0.02052243 0.99958878 0.02002748 -76.14999383 
    40839 -0.05922132 -0.01878114 0.99806819 -69.82750912 
    40840 Axis -0.29575854 0.89952239 0.32153750 
    40841 Axis point -851.87721930 0.00000000 1550.05387539 
    40842 Rotation angle (degrees) 3.76179925 
    40843 Shift along axis -69.58016548 
    40844  
    40845 
    40846 > select subtract #27.1
    40847 
    40848 Nothing selected 
    40849 
    40850 > select add #27.2
    40851 
    40852 1407 atoms, 1415 bonds, 194 residues, 1 model selected 
    40853 
    40854 > select subtract #27.2
    40855 
    40856 Nothing selected 
    40857 
    40858 > select add #27.2
    40859 
    40860 1407 atoms, 1415 bonds, 194 residues, 1 model selected 
    40861 
    40862 > fitmap #27.1 inMap #34
    40863 
    40864 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    40865 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    40866 average map value = 0.008658, steps = 48 
    40867 shifted from previous position = 0.00355 
    40868 rotated from previous position = 0.0108 degrees 
    40869 atoms outside contour = 2881, contour level = 0.0064458 
    40870  
    40871 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    40872 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40873 Matrix rotation and translation 
    40874 0.99804086 -0.02153848 0.05874132 -72.25917623 
    40875 0.02040049 0.99959374 0.01990428 -76.12688742 
    40876 -0.05914616 -0.01866693 0.99807479 -69.83738339 
    40877 Axis -0.29458199 0.90034858 0.32030280 
    40878 Axis point -854.19504449 0.00000000 1550.79158135 
    40879 Rotation angle (degrees) 3.75370689 
    40880 Shift along axis -69.62359268 
    40881  
    40882 
    40883 > select subtract #27.2
    40884 
    40885 Nothing selected 
    40886 
    40887 > hide #!30 models
    40888 
    40889 > show #!30 models
    40890 
    40891 > show #25.1 models
    40892 
    40893 > hide #!34 models
    40894 
    40895 > ui tool show Matchmaker
    40896 
    40897 > matchmaker #27.2 to #25.1
    40898 
    40899 Parameters 
    40900 --- 
    40901 Chain pairing | bb 
    40902 Alignment algorithm | Needleman-Wunsch 
    40903 Similarity matrix | BLOSUM-62 
    40904 SS fraction | 0.3 
    40905 Gap open (HH/SS/other) | 18/18/6 
    40906 Gap extend | 1 
    40907 SS matrix |  |  | H | S | O 
    40908 ---|---|---|--- 
    40909 H | 6 | -9 | -6 
    40910 S |  | 6 | -6 
    40911 O |  |  | 4 
    40912 Iteration cutoff | 2 
    40913  
    40914 Matchmaker 5nzr_COPI_coat_leaf_2017.cif A, chain A (#25.1) with
    40915 3mkq_yeast_alpha_betaprimeCOPI.cif B, chain B (#27.2), sequence alignment
    40916 score = 418.9 
    40917 RMSD between 62 pruned atom pairs is 1.400 angstroms; (across all 175 pairs:
    40918 3.710) 
    40919  
    40920 
    40921 > hide #25.1 models
    40922 
    40923 > show #25.1 models
    40924 
    40925 > hide #25.1 models
    40926 
    40927 > show #!34 models
    40928 
    40929 > fitmap #27.2 inMap #34
    40930 
    40931 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    40932 relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms 
    40933 average map value = 0.009081, steps = 88 
    40934 shifted from previous position = 2.49 
    40935 rotated from previous position = 10 degrees 
    40936 atoms outside contour = 654, contour level = 0.0064458 
    40937  
    40938 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    40939 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40940 Matrix rotation and translation 
    40941 0.98954467 0.01425451 -0.14352057 -45.77357441 
    40942 0.02436544 0.96427860 0.26376713 -113.41670488 
    40943 0.14215368 -0.26450630 0.95384944 -31.24973114 
    40944 Axis -0.87949755 -0.47560561 0.01683320 
    40945 Axis point 0.00000000 -165.74194167 238.63704483 
    40946 Rotation angle (degrees) 17.47723437 
    40947 Shift along axis 93.67333471 
    40948  
    40949 
    40950 > fitmap #27.2 inMap #34
    40951 
    40952 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    40953 relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms 
    40954 average map value = 0.009081, steps = 44 
    40955 shifted from previous position = 0.0121 
    40956 rotated from previous position = 0.0235 degrees 
    40957 atoms outside contour = 654, contour level = 0.0064458 
    40958  
    40959 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    40960 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40961 Matrix rotation and translation 
    40962 0.98950284 0.01456273 -0.14377777 -45.78107200 
    40963 0.02414939 0.96425692 0.26386627 -113.43225746 
    40964 0.14248133 -0.26456857 0.95378328 -31.21802132 
    40965 Axis -0.87916370 -0.47625287 0.01594945 
    40966 Axis point 0.00000000 -165.26762153 238.24622898 
    40967 Rotation angle (degrees) 17.48959966 
    40968 Shift along axis 93.77358484 
    40969  
    40970 
    40971 > fitmap #27.2 inMap #34
    40972 
    40973 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    40974 relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms 
    40975 average map value = 0.009081, steps = 44 
    40976 shifted from previous position = 0.0121 
    40977 rotated from previous position = 0.0235 degrees 
    40978 atoms outside contour = 654, contour level = 0.0064458 
    40979  
    40980 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    40981 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    40982 Matrix rotation and translation 
    40983 0.98950284 0.01456273 -0.14377777 -45.78107200 
    40984 0.02414939 0.96425692 0.26386627 -113.43225746 
    40985 0.14248133 -0.26456857 0.95378328 -31.21802132 
    40986 Axis -0.87916370 -0.47625287 0.01594945 
    40987 Axis point 0.00000000 -165.26762153 238.24622898 
    40988 Rotation angle (degrees) 17.48959966 
    40989 Shift along axis 93.77358484 
    40990  
    40991 
    40992 > fitmap #27.2 inMap #34
    40993 
    40994 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    40995 relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms 
    40996 average map value = 0.009081, steps = 88 
    40997 shifted from previous position = 2.49 
    40998 rotated from previous position = 10 degrees 
    40999 atoms outside contour = 654, contour level = 0.0064458 
    41000  
    41001 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    41002 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41003 Matrix rotation and translation 
    41004 0.98954467 0.01425451 -0.14352057 -45.77357441 
    41005 0.02436544 0.96427860 0.26376713 -113.41670488 
    41006 0.14215368 -0.26450630 0.95384944 -31.24973114 
    41007 Axis -0.87949755 -0.47560561 0.01683320 
    41008 Axis point 0.00000000 -165.74194167 238.63704483 
    41009 Rotation angle (degrees) 17.47723437 
    41010 Shift along axis 93.67333471 
    41011  
    41012 
    41013 > select add #30
    41014 
    41015 2737 atoms, 2622 bonds, 1 pseudobond, 505 residues, 2 models selected 
    41016 
    41017 > select subtract #30
    41018 
    41019 Nothing selected 
    41020 
    41021 > show #25.1 models
    41022 
    41023 > hide #25.1 models
    41024 
    41025 > show #25.1 models
    41026 
    41027 > hide #25.1 models
    41028 
    41029 > show #25.1 models
    41030 
    41031 > hide #!30 models
    41032 
    41033 > hide #27.2 models
    41034 
    41035 > select add #25.1
    41036 
    41037 3251 atoms, 3250 bonds, 813 residues, 1 model selected 
    41038 
    41039 > view matrix models
    41040 > #25.1,-0.49739,0.85348,-0.15546,287.51,-0.86504,-0.50149,0.014511,475.92,-0.065576,0.1417,0.98774,223.57
    41041 
    41042 > fitmap #25.1 inMap #34
    41043 
    41044 Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map
    41045 relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms 
    41046 average map value = 0.01111, steps = 68 
    41047 shifted from previous position = 2.11 
    41048 rotated from previous position = 0.00909 degrees 
    41049 atoms outside contour = 983, contour level = 0.0064458 
    41050  
    41051 Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to
    41052 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41053 Matrix rotation and translation 
    41054 -0.50773664 0.84633078 -0.16102079 226.47717411 
    41055 -0.85942981 -0.51057143 0.02640457 400.52408444 
    41056 -0.05986562 0.15179263 0.98659773 146.90785450 
    41057 Axis 0.07318292 -0.05903935 -0.99556949 
    41058 Axis point 229.74919439 128.44033942 0.00000000 
    41059 Rotation angle (degrees) 121.05463313 
    41060 Shift along axis -153.32940131 
    41061  
    41062 
    41063 > fitmap #25.1 inMap #34
    41064 
    41065 Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map
    41066 relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms 
    41067 average map value = 0.01111, steps = 48 
    41068 shifted from previous position = 0.0158 
    41069 rotated from previous position = 0.0116 degrees 
    41070 atoms outside contour = 981, contour level = 0.0064458 
    41071  
    41072 Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to
    41073 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41074 Matrix rotation and translation 
    41075 -0.50788469 0.84622701 -0.16109926 226.51308649 
    41076 -0.85933646 -0.51072952 0.02638566 400.51616908 
    41077 -0.05994989 0.15183934 0.98658543 146.92713917 
    41078 Axis 0.07322941 -0.05904258 -0.99556588 
    41079 Axis point 229.74511440 128.43760322 0.00000000 
    41080 Rotation angle (degrees) 121.06528239 
    41081 Shift along axis -153.33573453 
    41082  
    41083 
    41084 > select subtract #25.1
    41085 
    41086 Nothing selected 
    41087 
    41088 > hide #25.1 models
    41089 
    41090 > show #27.2 models
    41091 
    41092 > fitmap #27.2 inMap #34
    41093 
    41094 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    41095 relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms 
    41096 average map value = 0.009081, steps = 88 
    41097 shifted from previous position = 2.49 
    41098 rotated from previous position = 10 degrees 
    41099 atoms outside contour = 654, contour level = 0.0064458 
    41100  
    41101 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    41102 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41103 Matrix rotation and translation 
    41104 0.98954467 0.01425451 -0.14352057 -45.77357441 
    41105 0.02436544 0.96427860 0.26376713 -113.41670488 
    41106 0.14215368 -0.26450630 0.95384944 -31.24973114 
    41107 Axis -0.87949755 -0.47560561 0.01683320 
    41108 Axis point 0.00000000 -165.74194167 238.63704483 
    41109 Rotation angle (degrees) 17.47723437 
    41110 Shift along axis 93.67333471 
    41111  
    41112 
    41113 > hide #27.2 models
    41114 
    41115 > show #27.2 models
    41116 
    41117 > show #!30 models
    41118 
    41119 > hide #!30 models
    41120 
    41121 > hide #27.2 models
    41122 
    41123 > show #27.2 models
    41124 
    41125 > close #35
    41126 
    41127 > close #36
    41128 
    41129 > hide #25.5 models
    41130 
    41131 > show #25.5 models
    41132 
    41133 > hide #25.5 models
    41134 
    41135 > show #25.5 models
    41136 
    41137 > hide #25.5 models
    41138 
    41139 > show #25.5 models
    41140 
    41141 > hide #25.5 models
    41142 
    41143 > show #25.5 models
    41144 
    41145 > hide #25.5 models
    41146 
    41147 > show #25.5 models
    41148 
    41149 > hide #25.5 models
    41150 
    41151 > show #25.5 models
    41152 
    41153 > hide #25.5 models
    41154 
    41155 > show #25.5 models
    41156 
    41157 > combine #26.1
    41158 
    41159 > hide #!35 models
    41160 
    41161 > show #!35 models
    41162 
    41163 > select add #35
    41164 
    41165 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected 
    41166 
    41167 > hide #!34 models
    41168 
    41169 > select add #25.5
    41170 
    41171 1941 atoms, 1965 bonds, 3 pseudobonds, 320 residues, 3 models selected 
    41172 
    41173 > select subtract #25.5
    41174 
    41175 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected 
    41176 
    41177 > select add #25.5
    41178 
    41179 1941 atoms, 1965 bonds, 3 pseudobonds, 320 residues, 3 models selected 
    41180 
    41181 > select subtract #25.5
    41182 
    41183 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected 
    41184 
    41185 > matchmaker #!35 to #25.5
    41186 
    41187 Parameters 
    41188 --- 
    41189 Chain pairing | bb 
    41190 Alignment algorithm | Needleman-Wunsch 
    41191 Similarity matrix | BLOSUM-62 
    41192 SS fraction | 0.3 
    41193 Gap open (HH/SS/other) | 18/18/6 
    41194 Gap extend | 1 
    41195 SS matrix |  |  | H | S | O 
    41196 ---|---|---|--- 
    41197 H | 6 | -9 | -6 
    41198 S |  | 6 | -6 
    41199 O |  |  | 4 
    41200 Iteration cutoff | 2 
    41201  
    41202 Matchmaker 5nzr_COPI_coat_leaf_2017.cif F, chain F (#25.5) with copy of
    41203 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#35), sequence alignment
    41204 score = 720 
    41205 RMSD between 92 pruned atom pairs is 1.327 angstroms; (across all 159 pairs:
    41206 2.577) 
    41207  
    41208 
    41209 > show #!34 models
    41210 
    41211 > close #25.5
    41212 
    41213 > fitmap #35 inMap #34
    41214 
    41215 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) to map
    41216 relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms 
    41217 average map value = 0.008638, steps = 44 
    41218 shifted from previous position = 0.306 
    41219 rotated from previous position = 3.66 degrees 
    41220 atoms outside contour = 565, contour level = 0.0064458 
    41221  
    41222 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) relative
    41223 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41224 Matrix rotation and translation 
    41225 -0.33621727 0.36097706 0.86985832 201.02429891 
    41226 -0.22646712 -0.92751492 0.29736964 179.03665203 
    41227 0.91415019 -0.09701350 0.39359598 210.27410806 
    41228 Axis -0.55630275 -0.06247653 -0.82862774 
    41229 Axis point 47.66462041 77.64958055 0.00000000 
    41230 Rotation angle (degrees) 159.23915181 
    41231 Shift along axis -297.25491863 
    41232  
    41233 
    41234 > fitmap #35 inMap #34
    41235 
    41236 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) to map
    41237 relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms 
    41238 average map value = 0.008638, steps = 48 
    41239 shifted from previous position = 0.034 
    41240 rotated from previous position = 0.0754 degrees 
    41241 atoms outside contour = 565, contour level = 0.0064458 
    41242  
    41243 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) relative
    41244 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41245 Matrix rotation and translation 
    41246 -0.33622679 0.36044176 0.87007659 200.96371480 
    41247 -0.22735855 -0.92760278 0.29641384 179.04249014 
    41248 0.91392539 -0.09815708 0.39383443 210.21005922 
    41249 Axis -0.55627570 -0.06181911 -0.82869521 
    41250 Axis point 47.69710519 77.73084221 0.00000000 
    41251 Rotation angle (degrees) 159.22775321 
    41252 Shift along axis -297.05954698 
    41253  
    41254 
    41255 > fitmap #35 inMap #34
    41256 
    41257 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) to map
    41258 relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms 
    41259 average map value = 0.008638, steps = 48 
    41260 shifted from previous position = 0.0123 
    41261 rotated from previous position = 0.0415 degrees 
    41262 atoms outside contour = 562, contour level = 0.0064458 
    41263  
    41264 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) relative
    41265 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41266 Matrix rotation and translation 
    41267 -0.33610588 0.36049797 0.87010001 200.95884938 
    41268 -0.22803367 -0.92750642 0.29619667 179.05460852 
    41269 0.91380166 -0.09885865 0.39394604 210.16812948 
    41270 Axis -0.55627911 -0.06153647 -0.82871395 
    41271 Axis point 47.74392439 77.76496889 0.00000000 
    41272 Rotation angle (degrees) 159.20120342 
    41273 Shift along axis -296.97686052 
    41274  
    41275 
    41276 > hide #25.9 models
    41277 
    41278 > show #25.9 models
    41279 
    41280 > select subtract #35
    41281 
    41282 Nothing selected 
    41283 
    41284 > hide #!34 models
    41285 
    41286 > show #!34 models
    41287 
    41288 > hide #!35 models
    41289 
    41290 > show #!35 models
    41291 
    41292 > show #37 models
    41293 
    41294 > hide #37 models
    41295 
    41296 > show #37 models
    41297 
    41298 > combine #26.1
    41299 
    41300 > matchmaker #!36 to #37
    41301 
    41302 Parameters 
    41303 --- 
    41304 Chain pairing | bb 
    41305 Alignment algorithm | Needleman-Wunsch 
    41306 Similarity matrix | BLOSUM-62 
    41307 SS fraction | 0.3 
    41308 Gap open (HH/SS/other) | 18/18/6 
    41309 Gap extend | 1 
    41310 SS matrix |  |  | H | S | O 
    41311 ---|---|---|--- 
    41312 H | 6 | -9 | -6 
    41313 S |  | 6 | -6 
    41314 O |  |  | 4 
    41315 Iteration cutoff | 2 
    41316  
    41317 Matchmaker copy of 5nzr_COPI_coat_leaf_2017.cif F, chain F (#37) with copy of
    41318 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#36), sequence alignment
    41319 score = 720 
    41320 RMSD between 92 pruned atom pairs is 1.327 angstroms; (across all 159 pairs:
    41321 2.577) 
    41322  
    41323 
    41324 > fitmap #36 inMap #34
    41325 
    41326 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#36) to map
    41327 relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms 
    41328 average map value = 0.007274, steps = 68 
    41329 shifted from previous position = 1.09 
    41330 rotated from previous position = 1.54 degrees 
    41331 atoms outside contour = 617, contour level = 0.0064458 
    41332  
    41333 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#36) relative
    41334 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41335 Matrix rotation and translation 
    41336 0.11537320 0.75636603 0.64389397 234.64544426 
    41337 0.67225004 -0.53667322 0.50996247 244.70048176 
    41338 0.73127895 0.37402175 -0.57038480 234.38875714 
    41339 Axis -0.74616702 -0.47964867 -0.46170547 
    41340 Axis point 0.00000000 48.44393250 42.99244610 
    41341 Rotation angle (degrees) 174.77352811 
    41342 Shift along axis -400.67352208 
    41343  
    41344 
    41345 > select add #37
    41346 
    41347 635 atoms, 634 bonds, 159 residues, 1 model selected 
    41348 
    41349 > select subtract #37
    41350 
    41351 Nothing selected 
    41352 
    41353 > hide #!34 models
    41354 
    41355 > select add #36
    41356 
    41357 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected 
    41358 
    41359 > select subtract #36
    41360 
    41361 Nothing selected 
    41362 
    41363 > select add #36
    41364 
    41365 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected 
    41366 
    41367 > select subtract #36
    41368 
    41369 Nothing selected 
    41370 
    41371 > select add #37
    41372 
    41373 635 atoms, 634 bonds, 159 residues, 1 model selected 
    41374 
    41375 > select subtract #37
    41376 
    41377 Nothing selected 
    41378 
    41379 > matchmaker #!36 to #37
    41380 
    41381 Parameters 
    41382 --- 
    41383 Chain pairing | bb 
    41384 Alignment algorithm | Needleman-Wunsch 
    41385 Similarity matrix | BLOSUM-62 
    41386 SS fraction | 0.3 
    41387 Gap open (HH/SS/other) | 18/18/6 
    41388 Gap extend | 1 
    41389 SS matrix |  |  | H | S | O 
    41390 ---|---|---|--- 
    41391 H | 6 | -9 | -6 
    41392 S |  | 6 | -6 
    41393 O |  |  | 4 
    41394 Iteration cutoff | 2 
    41395  
    41396 Matchmaker copy of 5nzr_COPI_coat_leaf_2017.cif F, chain F (#37) with copy of
    41397 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#36), sequence alignment
    41398 score = 720 
    41399 RMSD between 92 pruned atom pairs is 1.327 angstroms; (across all 159 pairs:
    41400 2.577) 
    41401  
    41402 
    41403 > matchmaker #!36 to #37
    41404 
    41405 Parameters 
    41406 --- 
    41407 Chain pairing | bb 
    41408 Alignment algorithm | Needleman-Wunsch 
    41409 Similarity matrix | BLOSUM-62 
    41410 SS fraction | 0.3 
    41411 Gap open (HH/SS/other) | 18/18/6 
    41412 Gap extend | 1 
    41413 SS matrix |  |  | H | S | O 
    41414 ---|---|---|--- 
    41415 H | 6 | -9 | -6 
    41416 S |  | 6 | -6 
    41417 O |  |  | 4 
    41418 Iteration cutoff | 2 
    41419  
    41420 Matchmaker copy of 5nzr_COPI_coat_leaf_2017.cif F, chain F (#37) with copy of
    41421 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#36), sequence alignment
    41422 score = 720 
    41423 RMSD between 92 pruned atom pairs is 1.327 angstroms; (across all 159 pairs:
    41424 2.577) 
    41425  
    41426 
    41427 > fitmap #36 inMap #34
    41428 
    41429 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#36) to map
    41430 relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms 
    41431 average map value = 0.007274, steps = 68 
    41432 shifted from previous position = 1.09 
    41433 rotated from previous position = 1.54 degrees 
    41434 atoms outside contour = 617, contour level = 0.0064458 
    41435  
    41436 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#36) relative
    41437 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41438 Matrix rotation and translation 
    41439 0.11537320 0.75636603 0.64389397 234.64544426 
    41440 0.67225004 -0.53667322 0.50996247 244.70048177 
    41441 0.73127895 0.37402175 -0.57038480 234.38875714 
    41442 Axis -0.74616702 -0.47964867 -0.46170547 
    41443 Axis point 0.00000000 48.44393252 42.99244612 
    41444 Rotation angle (degrees) 174.77352811 
    41445 Shift along axis -400.67352206 
    41446  
    41447 
    41448 > close #37
    41449 
    41450 > show #!34 models
    41451 
    41452 > fitmap #36 inMap #34
    41453 
    41454 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#36) to map
    41455 relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms 
    41456 average map value = 0.007274, steps = 40 
    41457 shifted from previous position = 0.00738 
    41458 rotated from previous position = 0.0209 degrees 
    41459 atoms outside contour = 617, contour level = 0.0064458 
    41460  
    41461 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#36) relative
    41462 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41463 Matrix rotation and translation 
    41464 0.11505990 0.75631839 0.64400598 234.64753159 
    41465 0.67216010 -0.53663003 0.51012645 244.70925801 
    41466 0.73141097 0.37418003 -0.57011164 234.40153165 
    41467 Axis -0.74606159 -0.47967061 -0.46185301 
    41468 Axis point 0.00000000 48.43223574 42.96460006 
    41469 Rotation angle (degrees) 174.77256767 
    41470 Shift along axis -400.70040380 
    41471  
    41472 
    41473 > fitmap #36 inMap #34
    41474 
    41475 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#36) to map
    41476 relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms 
    41477 average map value = 0.007274, steps = 40 
    41478 shifted from previous position = 0.00299 
    41479 rotated from previous position = 0.014 degrees 
    41480 atoms outside contour = 617, contour level = 0.0064458 
    41481  
    41482 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#36) relative
    41483 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41484 Matrix rotation and translation 
    41485 0.11491296 0.75620763 0.64416227 234.64227089 
    41486 0.67213072 -0.53667324 0.51011971 244.70806988 
    41487 0.73146107 0.37434188 -0.56994109 234.41059083 
    41488 Axis -0.74601371 -0.47965198 -0.46194969 
    41489 Axis point 0.00000000 48.42873539 42.95258985 
    41490 Rotation angle (degrees) 174.77873247 
    41491 Shift along axis -400.70696272 
    41492  
    41493 
    41494 > select add #35
    41495 
    41496 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected 
    41497 
    41498 > fitmap #35 inMap #34
    41499 
    41500 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) to map
    41501 relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms 
    41502 average map value = 0.008638, steps = 60 
    41503 shifted from previous position = 0.021 
    41504 rotated from previous position = 0.0989 degrees 
    41505 atoms outside contour = 565, contour level = 0.0064458 
    41506  
    41507 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) relative
    41508 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41509 Matrix rotation and translation 
    41510 -0.33695386 0.36047522 0.86978141 200.97071078 
    41511 -0.22665166 -0.92769340 0.29667147 179.03519218 
    41512 0.91383320 -0.09717280 0.39429218 210.27309495 
    41513 Axis -0.55599565 -0.06218854 -0.82885549 
    41514 Axis point 47.68614232 77.68205036 0.00000000 
    41515 Rotation angle (degrees) 159.25684744 
    41516 Shift along axis -297.15878789 
    41517  
    41518 
    41519 > fitmap #35 inMap #34
    41520 
    41521 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) to map
    41522 relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms 
    41523 average map value = 0.008638, steps = 40 
    41524 shifted from previous position = 0.03 
    41525 rotated from previous position = 0.0831 degrees 
    41526 atoms outside contour = 564, contour level = 0.0064458 
    41527  
    41528 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) relative
    41529 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41530 Matrix rotation and translation 
    41531 -0.33559289 0.36077052 0.87018506 201.01608465 
    41532 -0.22676988 -0.92753054 0.29709005 179.02852543 
    41533 0.91430456 -0.09763045 0.39308454 210.23157936 
    41534 Axis -0.55657709 -0.06221087 -0.82846349 
    41535 Axis point 47.64467346 77.68273633 0.00000000 
    41536 Rotation angle (degrees) 159.23128706 
    41537 Shift along axis -297.18765431 
    41538  
    41539 
    41540 > select subtract #35
    41541 
    41542 Nothing selected 
    41543 
    41544 > select add #36
    41545 
    41546 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected 
    41547 
    41548 > fitmap #35 inMap #34
    41549 
    41550 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) to map
    41551 relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms 
    41552 average map value = 0.008638, steps = 48 
    41553 shifted from previous position = 0.00599 
    41554 rotated from previous position = 0.0771 degrees 
    41555 atoms outside contour = 564, contour level = 0.0064458 
    41556  
    41557 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) relative
    41558 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41559 Matrix rotation and translation 
    41560 -0.33674425 0.36094457 0.86966793 201.01956439 
    41561 -0.22639479 -0.92755279 0.29730658 179.03404178 
    41562 0.91397412 -0.09677201 0.39406405 210.29209083 
    41563 Axis -0.55607345 -0.06251924 -0.82877841 
    41564 Axis point 47.68635638 77.63917676 0.00000000 
    41565 Rotation angle (degrees) 159.24697513 
    41566 Shift along axis -297.26026167 
    41567  
    41568 
    41569 > fitmap #35 inMap #34
    41570 
    41571 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) to map
    41572 relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms 
    41573 average map value = 0.008638, steps = 40 
    41574 shifted from previous position = 0.00259 
    41575 rotated from previous position = 0.0467 degrees 
    41576 atoms outside contour = 565, contour level = 0.0064458 
    41577  
    41578 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#35) relative
    41579 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41580 Matrix rotation and translation 
    41581 -0.33600451 0.36092061 0.86996395 201.02317412 
    41582 -0.22656995 -0.92751557 0.29728928 179.03525249 
    41583 0.91420294 -0.09721716 0.39342318 210.25979761 
    41584 Axis -0.55639525 -0.06239281 -0.82857194 
    41585 Axis point 47.65908017 77.66051880 0.00000000 
    41586 Rotation angle (degrees) 159.23597395 
    41587 Shift along axis -297.23422034 
    41588  
    41589 
    41590 > select subtract #36
    41591 
    41592 Nothing selected 
    41593 
    41594 > show #25.10 models
    41595 
    41596 > hide #25.10 models
    41597 
    41598 > show #25.10 models
    41599 
    41600 > hide #25.10 models
    41601 
    41602 > select add #26.1
    41603 
    41604 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected 
    41605 
    41606 > select subtract #26.1
    41607 
    41608 Nothing selected 
    41609 
    41610 > show #25.10 models
    41611 
    41612 > hide #25.10 models
    41613 
    41614 > close #25.10
    41615 
    41616 > hide #25.9 models
    41617 
    41618 > show #25.9 models
    41619 
    41620 > combine #26.1
    41621 
    41622 > select add #37
    41623 
    41624 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected 
    41625 
    41626 > select subtract #37
    41627 
    41628 Nothing selected 
    41629 
    41630 > select add #37
    41631 
    41632 1306 atoms, 1331 bonds, 3 pseudobonds, 161 residues, 2 models selected 
    41633 
    41634 > select subtract #37
    41635 
    41636 Nothing selected 
    41637 
    41638 > hide #25.9 models
    41639 
    41640 > show #25.9 models
    41641 
    41642 > matchmaker #!37 to #25.9
    41643 
    41644 Parameters 
    41645 --- 
    41646 Chain pairing | bb 
    41647 Alignment algorithm | Needleman-Wunsch 
    41648 Similarity matrix | BLOSUM-62 
    41649 SS fraction | 0.3 
    41650 Gap open (HH/SS/other) | 18/18/6 
    41651 Gap extend | 1 
    41652 SS matrix |  |  | H | S | O 
    41653 ---|---|---|--- 
    41654 H | 6 | -9 | -6 
    41655 S |  | 6 | -6 
    41656 O |  |  | 4 
    41657 Iteration cutoff | 2 
    41658  
    41659 Matchmaker 5nzr_COPI_coat_leaf_2017.cif M, chain M (#25.9) with copy of
    41660 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#37), sequence alignment
    41661 score = 762.6 
    41662 RMSD between 94 pruned atom pairs is 1.262 angstroms; (across all 159 pairs:
    41663 2.576) 
    41664  
    41665 
    41666 > hide #!34 models
    41667 
    41668 > fitmap #37 inMap #34
    41669 
    41670 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#37) to map
    41671 relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms 
    41672 average map value = 0.01088, steps = 104 
    41673 shifted from previous position = 0.407 
    41674 rotated from previous position = 3.96 degrees 
    41675 atoms outside contour = 405, contour level = 0.0064458 
    41676  
    41677 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#37) relative
    41678 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41679 Matrix rotation and translation 
    41680 -0.54129972 -0.76666173 0.34528887 243.97507197 
    41681 -0.38367034 -0.14020143 -0.91276537 216.04770294 
    41682 0.74819227 -0.62655674 -0.21825437 215.75309840 
    41683 Axis 0.45775576 -0.64439480 0.61254796 
    41684 Axis point 179.85601116 0.00000000 234.95515780 
    41685 Rotation angle (degrees) 161.78271137 
    41686 Shift along axis 104.62009737 
    41687  
    41688 
    41689 > close #25.9
    41690 
    41691 > show #!34 models
    41692 
    41693 > fitmap #37 inMap #34
    41694 
    41695 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#37) to map
    41696 relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms 
    41697 average map value = 0.01088, steps = 76 
    41698 shifted from previous position = 0.00432 
    41699 rotated from previous position = 0.0603 degrees 
    41700 atoms outside contour = 406, contour level = 0.0064458 
    41701  
    41702 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#37) relative
    41703 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41704 Matrix rotation and translation 
    41705 -0.54069520 -0.76683005 0.34586176 243.96988302 
    41706 -0.38360219 -0.14115007 -0.91264780 215.99229085 
    41707 0.74866418 -0.62613762 -0.21783853 215.78179850 
    41708 Axis 0.45807841 -0.64400884 0.61271264 
    41709 Axis point 179.93311836 0.00000000 235.03686061 
    41710 Rotation angle (degrees) 161.77613953 
    41711 Shift along axis 104.86862749 
    41712  
    41713 
    41714 > fitmap #37 inMap #34
    41715 
    41716 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#37) to map
    41717 relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms 
    41718 average map value = 0.01088, steps = 64 
    41719 shifted from previous position = 0.00818 
    41720 rotated from previous position = 0.0216 degrees 
    41721 atoms outside contour = 406, contour level = 0.0064458 
    41722  
    41723 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#37) relative
    41724 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41725 Matrix rotation and translation 
    41726 -0.54084402 -0.76667433 0.34597429 243.97678854 
    41727 -0.38342242 -0.14138288 -0.91268731 215.97017405 
    41728 0.74864877 -0.62627577 -0.21749404 215.77421533 
    41729 Axis 0.45800331 -0.64392046 0.61286165 
    41730 Axis point 179.93402353 0.00000000 235.05958743 
    41731 Rotation angle (degrees) 161.77954268 
    41732 Shift along axis 104.91430511 
    41733  
    41734 
    41735 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    41736 > dataset/Chimera sessions/20240406_leaf_fitting_v19.cxs"
    41737 
    41738 > hide #!26.1 models
    41739 
    41740 > show #!26.1 models
    41741 
    41742 > hide #!26.2 models
    41743 
    41744 > show #!26.2 models
    41745 
    41746 > hide #26.3 models
    41747 
    41748 > show #26.3 models
    41749 
    41750 > hide #27.1 models
    41751 
    41752 > show #27.1 models
    41753 
    41754 > hide #27.1 models
    41755 
    41756 > show #27.1 models
    41757 
    41758 > hide #27.2 models
    41759 
    41760 > show #27.2 models
    41761 
    41762 > hide #28.2 models
    41763 
    41764 > show #28.2 models
    41765 
    41766 > hide #28.2 models
    41767 
    41768 > show #28.2 models
    41769 
    41770 > hide #28.2 models
    41771 
    41772 > show #28.2 models
    41773 
    41774 > hide #28.2 models
    41775 
    41776 > show #28.2 models
    41777 
    41778 > hide #28.2 models
    41779 
    41780 > show #28.1 models
    41781 
    41782 > hide #28.1 models
    41783 
    41784 > close #28
    41785 
    41786 > show #29 models
    41787 
    41788 > hide #29 models
    41789 
    41790 > show #29 models
    41791 
    41792 > hide #29 models
    41793 
    41794 > show #29 models
    41795 
    41796 > hide #29 models
    41797 
    41798 > close #29
    41799 
    41800 > show #!30 models
    41801 
    41802 > fitmap #30 inMap #34
    41803 
    41804 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    41805 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    41806 average map value = 0.009304, steps = 36 
    41807 shifted from previous position = 0.0233 
    41808 rotated from previous position = 0.0317 degrees 
    41809 atoms outside contour = 1051, contour level = 0.0064458 
    41810  
    41811 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    41812 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41813 Matrix rotation and translation 
    41814 0.79056596 -0.52023232 0.32305389 236.67743801 
    41815 -0.42069457 -0.07803799 0.90383968 306.89868613 
    41816 -0.44499613 -0.85045189 -0.28055309 224.02068804 
    41817 Axis -0.91481745 0.40051812 0.05190635 
    41818 Axis point 0.00000000 298.42661967 -19.93047147 
    41819 Rotation angle (degrees) 106.49983377 
    41820 Shift along axis -81.97007056 
    41821  
    41822 
    41823 > fitmap #30 inMap #34
    41824 
    41825 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    41826 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    41827 average map value = 0.009304, steps = 44 
    41828 shifted from previous position = 0.0315 
    41829 rotated from previous position = 0.0652 degrees 
    41830 atoms outside contour = 1049, contour level = 0.0064458 
    41831  
    41832 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    41833 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41834 Matrix rotation and translation 
    41835 0.79098567 -0.51952120 0.32317084 236.68463732 
    41836 -0.42093865 -0.07876264 0.90366316 306.91752169 
    41837 -0.44401838 -0.85081971 -0.28098667 224.04980128 
    41838 Axis -0.91502166 0.40011491 0.05141411 
    41839 Axis point 0.00000000 298.31698751 -19.93413458 
    41840 Rotation angle (degrees) 106.52190026 
    41841 Shift along axis -82.24997222 
    41842  
    41843 
    41844 > fitmap #30 inMap #34
    41845 
    41846 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    41847 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    41848 average map value = 0.009304, steps = 28 
    41849 shifted from previous position = 0.0253 
    41850 rotated from previous position = 0.0264 degrees 
    41851 atoms outside contour = 1051, contour level = 0.0064458 
    41852  
    41853 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    41854 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41855 Matrix rotation and translation 
    41856 0.79085843 -0.51970045 0.32319405 236.68274699 
    41857 -0.42082895 -0.07837223 0.90374820 306.90197055 
    41858 -0.44434891 -0.85074628 -0.28068633 224.03169942 
    41859 Axis -0.91494800 0.40026452 0.05156031 
    41860 Axis point 0.00000000 298.36397081 -19.96131267 
    41861 Rotation angle (degrees) 106.50506268 
    41862 Shift along axis -82.15929109 
    41863  
    41864 
    41865 > fitmap #30 inMap #34
    41866 
    41867 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    41868 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    41869 average map value = 0.009303, steps = 28 
    41870 shifted from previous position = 0.0324 
    41871 rotated from previous position = 0.0159 degrees 
    41872 atoms outside contour = 1049, contour level = 0.0064458 
    41873  
    41874 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    41875 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41876 Matrix rotation and translation 
    41877 0.79092275 -0.51963452 0.32314267 236.68568073 
    41878 -0.42088094 -0.07863185 0.90370143 306.92165118 
    41879 -0.44418515 -0.85076260 -0.28089599 224.05512317 
    41880 Axis -0.91498940 0.40017738 0.05150204 
    41881 Axis point 0.00000000 298.34462200 -19.93270870 
    41882 Rotation angle (degrees) 106.51716289 
    41883 Shift along axis -82.20249073 
    41884  
    41885 
    41886 > hide #25.8 models
    41887 
    41888 > show #25.8 models
    41889 
    41890 > combine #26.3
    41891 
    41892 > hide #25.8 models
    41893 
    41894 > show #25.8 models
    41895 
    41896 > hide #26.3 models
    41897 
    41898 > show #26.3 models
    41899 
    41900 > hide #26.3 models
    41901 
    41902 > show #26.3 models
    41903 
    41904 > hide #26.3 models
    41905 
    41906 > show #26.3 models
    41907 
    41908 > hide #28 models
    41909 
    41910 > show #28 models
    41911 
    41912 > hide #28 models
    41913 
    41914 > show #28 models
    41915 
    41916 > hide #25.8 models
    41917 
    41918 > show #25.8 models
    41919 
    41920 > hide #26.3 models
    41921 
    41922 > hide #28 models
    41923 
    41924 > show #28 models
    41925 
    41926 > show #26.3 models
    41927 
    41928 > matchmaker #28 to #25.8
    41929 
    41930 Parameters 
    41931 --- 
    41932 Chain pairing | bb 
    41933 Alignment algorithm | Needleman-Wunsch 
    41934 Similarity matrix | BLOSUM-62 
    41935 SS fraction | 0.3 
    41936 Gap open (HH/SS/other) | 18/18/6 
    41937 Gap extend | 1 
    41938 SS matrix |  |  | H | S | O 
    41939 ---|---|---|--- 
    41940 H | 6 | -9 | -6 
    41941 S |  | 6 | -6 
    41942 O |  |  | 4 
    41943 Iteration cutoff | 2 
    41944  
    41945 Matchmaker 5nzr_COPI_coat_leaf_2017.cif L, chain L (#25.8) with copy of
    41946 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C, chain C (#28), sequence alignment
    41947 score = 662.5 
    41948 RMSD between 94 pruned atom pairs is 1.180 angstroms; (across all 137 pairs:
    41949 1.871) 
    41950  
    41951 
    41952 > hide #!34 models
    41953 
    41954 > hide #25.8 models
    41955 
    41956 > show #25.8 models
    41957 
    41958 > hide #25.8 models
    41959 
    41960 > show #25.8 models
    41961 
    41962 > hide #28 models
    41963 
    41964 > show #28 models
    41965 
    41966 > show #!34 models
    41967 
    41968 > fitmap #28 inMap #34
    41969 
    41970 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) to map
    41971 relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms 
    41972 average map value = 0.007772, steps = 84 
    41973 shifted from previous position = 1.17 
    41974 rotated from previous position = 4.01 degrees 
    41975 atoms outside contour = 477, contour level = 0.0064458 
    41976  
    41977 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) relative
    41978 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    41979 Matrix rotation and translation 
    41980 -0.56993929 -0.71661199 0.40204035 245.68162516 
    41981 -0.48485532 -0.10172533 -0.86865831 216.17526219 
    41982 0.66338866 -0.69001391 -0.28947588 214.81018147 
    41983 Axis 0.45533467 -0.66613308 0.59070895 
    41984 Axis point 184.91540655 0.00000000 218.31168221 
    41985 Rotation angle (degrees) 168.68702299 
    41986 Shift along axis 94.75616540 
    41987  
    41988 
    41989 > close #25.8
    41990 
    41991 > show #!25.6 models
    41992 
    41993 > hide #!25.6 models
    41994 
    41995 > show #!25.6 models
    41996 
    41997 > hide #!25.6 models
    41998 
    41999 > show #!25.6 models
    42000 
    42001 > hide #!25.6 models
    42002 
    42003 > hide #!25.7 models
    42004 
    42005 > show #!25.7 models
    42006 
    42007 > combine #26.2
    42008 
    42009 > hide #!25.7 models
    42010 
    42011 > show #!25.7 models
    42012 
    42013 > fitmap #25.7 inMap #34
    42014 
    42015 Fit molecule 5nzr_COPI_coat_leaf_2017.cif K (#25.7) to map
    42016 relion_locres_filtered_20240326_GT.mrc (#34) using 2239 atoms 
    42017 average map value = 0.01256, steps = 44 
    42018 shifted from previous position = 0.0318 
    42019 rotated from previous position = 0.0204 degrees 
    42020 atoms outside contour = 991, contour level = 0.0064458 
    42021  
    42022 Position of 5nzr_COPI_coat_leaf_2017.cif K (#25.7) relative to
    42023 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42024 Matrix rotation and translation 
    42025 -0.55373559 0.83221893 -0.02808100 218.96063769 
    42026 -0.83268549 -0.55327700 0.02279102 405.79166712 
    42027 0.00343055 0.03600284 0.99934579 143.66486297 
    42028 Axis 0.00793381 -0.01892296 -0.99978947 
    42029 Axis point 218.03723218 142.54045039 0.00000000 
    42030 Rotation angle (degrees) 123.63039976 
    42031 Shift along axis -149.57620218 
    42032  
    42033 
    42034 > matchmaker #!29 to #25.7
    42035 
    42036 Parameters 
    42037 --- 
    42038 Chain pairing | bb 
    42039 Alignment algorithm | Needleman-Wunsch 
    42040 Similarity matrix | BLOSUM-62 
    42041 SS fraction | 0.3 
    42042 Gap open (HH/SS/other) | 18/18/6 
    42043 Gap extend | 1 
    42044 SS matrix |  |  | H | S | O 
    42045 ---|---|---|--- 
    42046 H | 6 | -9 | -6 
    42047 S |  | 6 | -6 
    42048 O |  |  | 4 
    42049 Iteration cutoff | 2 
    42050  
    42051 Matchmaker 5nzr_COPI_coat_leaf_2017.cif K, chain K (#25.7) with copy of
    42052 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B, chain B (#29), sequence alignment
    42053 score = 1196.5 
    42054 RMSD between 133 pruned atom pairs is 1.377 angstroms; (across all 263 pairs:
    42055 3.376) 
    42056  
    42057 
    42058 > hide #!25.7 models
    42059 
    42060 > hide #!26.1 models
    42061 
    42062 > show #!26.1 models
    42063 
    42064 > hide #!35 models
    42065 
    42066 > show #!35 models
    42067 
    42068 > hide #!36 models
    42069 
    42070 > show #!36 models
    42071 
    42072 > hide #!37 models
    42073 
    42074 > show #!37 models
    42075 
    42076 > fitmap #37 inMap #34
    42077 
    42078 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#37) to map
    42079 relion_locres_filtered_20240326_GT.mrc (#34) using 1306 atoms 
    42080 average map value = 0.01088, steps = 48 
    42081 shifted from previous position = 0.0334 
    42082 rotated from previous position = 0.085 degrees 
    42083 atoms outside contour = 406, contour level = 0.0064458 
    42084  
    42085 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A (#37) relative
    42086 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42087 Matrix rotation and translation 
    42088 -0.54161844 -0.76643163 0.34529989 243.99385836 
    42089 -0.38372770 -0.14005578 -0.91276362 216.08584599 
    42090 0.74793216 -0.62687074 -0.21824425 215.72724414 
    42091 Axis 0.45761328 -0.64447172 0.61257350 
    42092 Axis point 179.86152210 0.00000000 234.93773919 
    42093 Rotation angle (degrees) 161.79764955 
    42094 Shift along axis 104.54240724 
    42095  
    42096 
    42097 > fitmap #29 inMap #34
    42098 
    42099 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) to map
    42100 relion_locres_filtered_20240326_GT.mrc (#34) using 2069 atoms 
    42101 average map value = 0.01228, steps = 56 
    42102 shifted from previous position = 0.538 
    42103 rotated from previous position = 0.789 degrees 
    42104 atoms outside contour = 767, contour level = 0.0064458 
    42105  
    42106 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) relative
    42107 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42108 Matrix rotation and translation 
    42109 -0.55899489 -0.72614953 0.40028935 245.14925444 
    42110 -0.44644233 -0.14323016 -0.88327479 214.34605641 
    42111 0.69872309 -0.67245221 -0.24411896 213.92962783 
    42112 Axis 0.45815304 -0.64854686 0.60785094 
    42113 Axis point 184.70030066 0.00000000 225.19456914 
    42114 Rotation angle (degrees) 166.69829003 
    42115 Shift along axis 103.33974015 
    42116  
    42117 
    42118 > fitmap #29 inMap #34
    42119 
    42120 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) to map
    42121 relion_locres_filtered_20240326_GT.mrc (#34) using 2069 atoms 
    42122 average map value = 0.01228, steps = 28 
    42123 shifted from previous position = 0.0473 
    42124 rotated from previous position = 0.0856 degrees 
    42125 atoms outside contour = 765, contour level = 0.0064458 
    42126  
    42127 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) relative
    42128 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42129 Matrix rotation and translation 
    42130 -0.55790495 -0.72657367 0.40103958 245.11920271 
    42131 -0.44743418 -0.14365178 -0.88270426 214.35988941 
    42132 0.69895973 -0.67190390 -0.24494986 213.97654545 
    42133 Axis 0.45879093 -0.64840052 0.60752585 
    42134 Axis point 184.83003870 0.00000000 225.15640457 
    42135 Rotation angle (degrees) 166.71854943 
    42136 Shift along axis 103.46368548 
    42137  
    42138 
    42139 > fitmap #29 inMap #34
    42140 
    42141 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) to map
    42142 relion_locres_filtered_20240326_GT.mrc (#34) using 2069 atoms 
    42143 average map value = 0.01228, steps = 40 
    42144 shifted from previous position = 0.0493 
    42145 rotated from previous position = 0.11 degrees 
    42146 atoms outside contour = 764, contour level = 0.0064458 
    42147  
    42148 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) relative
    42149 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42150 Matrix rotation and translation 
    42151 -0.55914928 -0.72625234 0.39988700 245.15446634 
    42152 -0.44598243 -0.14311765 -0.88352532 214.35117032 
    42153 0.69889322 -0.67236513 -0.24387165 213.93318919 
    42154 Axis 0.45802274 -0.64856757 0.60792703 
    42155 Axis point 184.65421906 0.00000000 225.24447541 
    42156 Rotation angle (degrees) 166.67273670 
    42157 Shift along axis 103.32087343 
    42158  
    42159 
    42160 > fitmap #29 inMap #34
    42161 
    42162 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) to map
    42163 relion_locres_filtered_20240326_GT.mrc (#34) using 2069 atoms 
    42164 average map value = 0.01228, steps = 28 
    42165 shifted from previous position = 0.023 
    42166 rotated from previous position = 0.0516 degrees 
    42167 atoms outside contour = 765, contour level = 0.0064458 
    42168  
    42169 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) relative
    42170 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42171 Matrix rotation and translation 
    42172 -0.55860599 -0.72638775 0.40040000 245.14033651 
    42173 -0.44669808 -0.14328398 -0.88313675 214.36057411 
    42174 0.69887063 -0.67218340 -0.24443673 213.95623045 
    42175 Axis 0.45836431 -0.64852387 0.60771617 
    42176 Axis point 184.73389217 0.00000000 225.19547510 
    42177 Rotation angle (degrees) 166.69613556 
    42178 Shift along axis 103.37029320 
    42179  
    42180 
    42181 > fitmap #29 inMap #34
    42182 
    42183 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) to map
    42184 relion_locres_filtered_20240326_GT.mrc (#34) using 2069 atoms 
    42185 average map value = 0.01228, steps = 44 
    42186 shifted from previous position = 0.0115 
    42187 rotated from previous position = 0.0231 degrees 
    42188 atoms outside contour = 767, contour level = 0.0064458 
    42189  
    42190 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) relative
    42191 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42192 Matrix rotation and translation 
    42193 -0.55878243 -0.72637637 0.40017440 245.14104522 
    42194 -0.44634487 -0.14327439 -0.88331687 214.35222183 
    42195 0.69895525 -0.67219774 -0.24415516 213.94712879 
    42196 Axis 0.45824170 -0.64851463 0.60781849 
    42197 Axis point 184.69864831 0.00000000 225.22630823 
    42198 Rotation angle (degrees) 166.68186027 
    42199 Shift along axis 103.36431790 
    42200  
    42201 
    42202 > show #!25.7 models
    42203 
    42204 > hide #!25.7 models
    42205 
    42206 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    42207 > dataset/Chimera sessions/20240406_leaf_fitting_v20.cxs"
    42208 
    42209 > open "/Users/becca/Desktop/Postdoc/Structure files/COPI
    42210 > structures/1pzd_Cow_Cterm_COPI_gamma.cif"
    42211 
    42212 Summary of feedback from opening /Users/becca/Desktop/Postdoc/Structure
    42213 files/COPI structures/1pzd_Cow_Cterm_COPI_gamma.cif 
    42214 --- 
    42215 note | Fetching CCD SO4 from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/4/SO4/SO4.cif 
    42216  
    42217 1pzd_Cow_Cterm_COPI_gamma.cif title: 
    42218 Structural Identification of a conserved appendage domain in the carboxyl-
    42219 terminus of the COPI gamma-subunit. [more info...] 
    42220  
    42221 Chain information for 1pzd_Cow_Cterm_COPI_gamma.cif #38 
    42222 --- 
    42223 Chain | Description | UniProt 
    42224 A | Coatomer gamma subunit | COPG_BOVIN 555-874 
    42225  
    42226 Non-standard residues in 1pzd_Cow_Cterm_COPI_gamma.cif #38 
    42227 --- 
    42228 SO4 — sulfate ion 
    42229  
    42230 
    42231 > hide #38 models
    42232 
    42233 > show #38 models
    42234 
    42235 > hide #38 models
    42236 
    42237 > show #38 models
    42238 
    42239 > hide #38 models
    42240 
    42241 > show #38 models
    42242 
    42243 > hide #38 models
    42244 
    42245 > show #38 models
    42246 
    42247 > hide #38 models
    42248 
    42249 > select add #38
    42250 
    42251 2270 atoms, 2156 bonds, 426 residues, 1 model selected 
    42252 
    42253 > show #38 models
    42254 
    42255 > view matrix models #38,1,0,0,-0.64529,0,1,0,23.842,0,0,1,-23.879
    42256 
    42257 > view matrix models #38,1,0,0,-1.0009,0,1,0,24.244,0,0,1,-24.177
    42258 
    42259 > view matrix models #38,1,0,0,59.65,0,1,0,285.42,0,0,1,-153.36
    42260 
    42261 > view matrix models #38,1,0,0,237.46,0,1,0,84.435,0,0,1,-77.65
    42262 
    42263 > view matrix models #38,1,0,0,227.02,0,1,0,211.76,0,0,1,-69.899
    42264 
    42265 > view matrix models #38,1,0,0,221.44,0,1,0,318.77,0,0,1,-11.511
    42266 
    42267 > view matrix models #38,1,0,0,221.36,0,1,0,404.89,0,0,1,96.545
    42268 
    42269 > view matrix models #38,1,0,0,318.93,0,1,0,520.04,0,0,1,349.49
    42270 
    42271 > view matrix models #38,1,0,0,383.63,0,1,0,467.83,0,0,1,382.24
    42272 
    42273 > color #38 #00f900ff
    42274 
    42275 > color #29 #00f900ff
    42276 
    42277 > color #25.7 #00f900ff
    42278 
    42279 > color #25.6 #00f900ff
    42280 
    42281 > color #9 #00f900ff
    42282 
    42283 > select subtract #38
    42284 
    42285 Nothing selected 
    42286 
    42287 > show #!25.6 models
    42288 
    42289 > hide #!25.6 models
    42290 
    42291 > show #!25.7 models
    42292 
    42293 > hide #!25.7 models
    42294 
    42295 > show #!25.7 models
    42296 
    42297 > matchmaker #38 to #25.7
    42298 
    42299 Parameters 
    42300 --- 
    42301 Chain pairing | bb 
    42302 Alignment algorithm | Needleman-Wunsch 
    42303 Similarity matrix | BLOSUM-62 
    42304 SS fraction | 0.3 
    42305 Gap open (HH/SS/other) | 18/18/6 
    42306 Gap extend | 1 
    42307 SS matrix |  |  | H | S | O 
    42308 ---|---|---|--- 
    42309 H | 6 | -9 | -6 
    42310 S |  | 6 | -6 
    42311 O |  |  | 4 
    42312 Iteration cutoff | 2 
    42313  
    42314 Matchmaker 5nzr_COPI_coat_leaf_2017.cif K, chain K (#25.7) with
    42315 1pzd_Cow_Cterm_COPI_gamma.cif, chain A (#38), sequence alignment score =
    42316 1222.3 
    42317 RMSD between 131 pruned atom pairs is 1.315 angstroms; (across all 271 pairs:
    42318 5.906) 
    42319  
    42320 
    42321 > hide #38 models
    42322 
    42323 > show #38 models
    42324 
    42325 > fitmap #38 inMap #34
    42326 
    42327 Fit molecule 1pzd_Cow_Cterm_COPI_gamma.cif (#38) to map
    42328 relion_locres_filtered_20240326_GT.mrc (#34) using 2270 atoms 
    42329 average map value = 0.005007, steps = 76 
    42330 shifted from previous position = 3.75 
    42331 rotated from previous position = 7.51 degrees 
    42332 atoms outside contour = 1871, contour level = 0.0064458 
    42333  
    42334 Position of 1pzd_Cow_Cterm_COPI_gamma.cif (#38) relative to
    42335 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42336 Matrix rotation and translation 
    42337 -0.75820373 -0.32963444 0.56255510 246.48716545 
    42338 0.63653394 -0.18730372 0.74815898 188.08479567 
    42339 -0.14125030 0.92534234 0.35183789 314.52014998 
    42340 Axis 0.14662708 0.58243015 0.79954713 
    42341 Axis point 103.49526445 19.07189728 0.00000000 
    42342 Rotation angle (degrees) 142.82890022 
    42343 Shift along axis 397.16163406 
    42344  
    42345 
    42346 > fitmap #38 inMap #34
    42347 
    42348 Fit molecule 1pzd_Cow_Cterm_COPI_gamma.cif (#38) to map
    42349 relion_locres_filtered_20240326_GT.mrc (#34) using 2270 atoms 
    42350 average map value = 0.005007, steps = 76 
    42351 shifted from previous position = 3.75 
    42352 rotated from previous position = 7.51 degrees 
    42353 atoms outside contour = 1871, contour level = 0.0064458 
    42354  
    42355 Position of 1pzd_Cow_Cterm_COPI_gamma.cif (#38) relative to
    42356 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42357 Matrix rotation and translation 
    42358 -0.75820373 -0.32963444 0.56255510 246.48716545 
    42359 0.63653394 -0.18730372 0.74815898 188.08479567 
    42360 -0.14125030 0.92534234 0.35183789 314.52014998 
    42361 Axis 0.14662708 0.58243015 0.79954713 
    42362 Axis point 103.49526445 19.07189728 0.00000000 
    42363 Rotation angle (degrees) 142.82890022 
    42364 Shift along axis 397.16163406 
    42365  
    42366 
    42367 > hide #!25.7 models
    42368 
    42369 > show #!25.7 models
    42370 
    42371 > hide #!34 models
    42372 
    42373 > hide #38 models
    42374 
    42375 > show #38 models
    42376 
    42377 > hide #38 models
    42378 
    42379 > show #38 models
    42380 
    42381 > hide #!29 models
    42382 
    42383 > show #!29 models
    42384 
    42385 > hide #38 models
    42386 
    42387 > show #38 models
    42388 
    42389 > hide #38 models
    42390 
    42391 > hide #!29 models
    42392 
    42393 > hide #!25.7 models
    42394 
    42395 > show #38 models
    42396 
    42397 > show #!29 models
    42398 
    42399 > show #!25.7 models
    42400 
    42401 > hide #!25.7 models
    42402 
    42403 > close #25.7
    42404 
    42405 > hide #38 models
    42406 
    42407 > show #38 models
    42408 
    42409 > show #!34 models
    42410 
    42411 > show #!25.6 models
    42412 
    42413 > hide #!25.6 models
    42414 
    42415 > show #!25.6 models
    42416 
    42417 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    42418 > dataset/Chimera sessions/20240406_leaf_fitting_v21.cxs"
    42419 
    42420 ——— End of log from Mon Apr 15 15:35:58 2024 ———
    42421 
    42422 opened ChimeraX session 
    42423 
    42424 > hide #27.1 models
    42425 
    42426 > show #27.1 models
    42427 
    42428 > hide #!34 models
    42429 
    42430 > hide #27.2 models
    42431 
    42432 > color #26.2 #00f900ff
    42433 
    42434 > hide #!30 models
    42435 
    42436 > hide #!25.2 models
    42437 
    42438 > hide #!25.6 models
    42439 
    42440 > hide #!25.4 models
    42441 
    42442 > ui mousemode right select
    42443 
    42444 Drag select of 213 residues 
    42445 
    42446 > show #!34 models
    42447 
    42448 > fitmap selection inMap #34 moveWholeMolecules false
    42449 
    42450 Missing or invalid "atomsOrMap" argument: invalid objects specifier 
    42451 
    42452 > fitmap sel inMap #34 moveWholeMolecules false
    42453 
    42454 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42455 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42456 average map value = 0.01022, steps = 116 
    42457 shifted from previous position = 4.1 
    42458 rotated from previous position = 12.8 degrees 
    42459 atoms outside contour = 712, contour level = 0.0064458 
    42460  
    42461 
    42462 > hide #!34 models
    42463 
    42464 > select add #27.1
    42465 
    42466 6538 atoms, 6591 bonds, 911 residues, 1 model selected 
    42467 
    42468 > ui tool show "Fit in Map"
    42469 
    42470 > show #!34 models
    42471 
    42472 > fitmap #27.1 inMap #34
    42473 
    42474 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42475 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    42476 average map value = 0.009087, steps = 64 
    42477 shifted from previous position = 0.359 
    42478 rotated from previous position = 0.614 degrees 
    42479 atoms outside contour = 2707, contour level = 0.0064458 
    42480  
    42481 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    42482 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42483 Matrix rotation and translation 
    42484 0.99755824 -0.01645506 0.06787330 -74.41438134 
    42485 0.01499908 0.99964752 0.02190559 -76.65180827 
    42486 -0.06820983 -0.02083407 0.99745344 -69.25669387 
    42487 Axis -0.29260936 0.93166855 0.21534503 
    42488 Axis point -861.70990518 -0.00000000 1343.67041359 
    42489 Rotation angle (degrees) 4.18815100 
    42490 Shift along axis -64.55381917 
    42491  
    42492 
    42493 > fitmap #27.1 inMap #34
    42494 
    42495 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42496 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    42497 average map value = 0.009087, steps = 28 
    42498 shifted from previous position = 0.04 
    42499 rotated from previous position = 0.0543 degrees 
    42500 atoms outside contour = 2708, contour level = 0.0064458 
    42501  
    42502 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    42503 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42504 Matrix rotation and translation 
    42505 0.99753347 -0.01580353 0.06839024 -74.55393363 
    42506 0.01436959 0.99966754 0.02140857 -76.52569111 
    42507 -0.06870583 -0.02037302 0.99742892 -69.29634346 
    42508 Axis -0.28527036 0.93604487 0.20601171 
    42509 Axis point -864.49362817 0.00000000 1328.57141631 
    42510 Rotation angle (degrees) 4.19961917 
    42511 Shift along axis -64.63931133 
    42512  
    42513 
    42514 > fitmap #27.1 inMap #34
    42515 
    42516 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42517 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    42518 average map value = 0.009088, steps = 40 
    42519 shifted from previous position = 0.0404 
    42520 rotated from previous position = 0.0851 degrees 
    42521 atoms outside contour = 2701, contour level = 0.0064458 
    42522  
    42523 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    42524 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42525 Matrix rotation and translation 
    42526 0.99744788 -0.01560279 0.06967261 -74.80797081 
    42527 0.01409304 0.99965624 0.02210842 -76.65657376 
    42528 -0.06999362 -0.02107009 0.99732489 -69.17622712 
    42529 Axis -0.28945064 0.93626391 0.19906840 
    42530 Axis point -856.59871046 0.00000000 1307.75000325 
    42531 Rotation angle (degrees) 4.27749259 
    42532 Shift along axis -63.88836937 
    42533  
    42534 
    42535 > fitmap #27.1 inMap #34
    42536 
    42537 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42538 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    42539 average map value = 0.009088, steps = 28 
    42540 shifted from previous position = 0.0256 
    42541 rotated from previous position = 0.0724 degrees 
    42542 atoms outside contour = 2702, contour level = 0.0064458 
    42543  
    42544 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    42545 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42546 Matrix rotation and translation 
    42547 0.99738262 -0.01494067 0.07074384 -75.05761397 
    42548 0.01341495 0.99966812 0.02199300 -76.61165845 
    42549 -0.07104895 -0.02098641 0.99725203 -69.15128969 
    42550 Axis -0.28491025 0.93994347 0.18796920 
    42551 Axis point -854.68760792 0.00000000 1285.59288630 
    42552 Rotation angle (degrees) 4.32571285 
    42553 Shift along axis -63.62425729 
    42554  
    42555 
    42556 > fitmap #27.1 inMap #34
    42557 
    42558 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42559 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    42560 average map value = 0.009088, steps = 44 
    42561 shifted from previous position = 0.0101 
    42562 rotated from previous position = 0.0174 degrees 
    42563 atoms outside contour = 2698, contour level = 0.0064458 
    42564  
    42565 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    42566 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42567 Matrix rotation and translation 
    42568 0.99737310 -0.01510216 0.07084371 -75.06002751 
    42569 0.01355699 0.99966071 0.02224125 -76.66278390 
    42570 -0.07115556 -0.02122240 0.99723944 -69.12245521 
    42571 Axis -0.28737765 0.93888604 0.18949167 
    42572 Axis point -852.18252975 0.00000000 1285.52549761 
    42573 Rotation angle (degrees) 4.33691254 
    42574 Shift along axis -63.50517285 
    42575  
    42576 
    42577 > fitmap #27.1 inMap #34
    42578 
    42579 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42580 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    42581 average map value = 0.009088, steps = 44 
    42582 shifted from previous position = 0.00135 
    42583 rotated from previous position = 0.00484 degrees 
    42584 atoms outside contour = 2701, contour level = 0.0064458 
    42585  
    42586 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    42587 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42588 Matrix rotation and translation 
    42589 0.99737289 -0.01503306 0.07086129 -75.07004040 
    42590 0.01349094 0.99966272 0.02219114 -76.65298501 
    42591 -0.07117099 -0.02117685 0.99723930 -69.12606492 
    42592 Axis -0.28678690 0.93924102 0.18862552 
    42593 Axis point -852.79462738 0.00000000 1284.79440303 
    42594 Rotation angle (degrees) 4.33628014 
    42595 Shift along axis -63.50546312 
    42596  
    42597 
    42598 > fitmap #27.1 inMap #34
    42599 
    42600 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42601 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    42602 average map value = 0.009088, steps = 44 
    42603 shifted from previous position = 0.000948 
    42604 rotated from previous position = 0.00317 degrees 
    42605 atoms outside contour = 2701, contour level = 0.0064458 
    42606  
    42607 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    42608 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42609 Matrix rotation and translation 
    42610 0.99737635 -0.01502750 0.07081379 -75.06232257 
    42611 0.01348836 0.99966337 0.02216344 -76.64796013 
    42612 -0.07112301 -0.02115013 0.99724329 -69.13037088 
    42613 Axis -0.28662951 0.93927310 0.18870499 
    42614 Axis point -853.26698506 0.00000000 1285.50345865 
    42615 Rotation angle (degrees) 4.33321102 
    42616 Shift along axis -63.52353651 
    42617  
    42618 
    42619 > fitmap #27.1 inMap #34
    42620 
    42621 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42622 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    42623 average map value = 0.009088, steps = 44 
    42624 shifted from previous position = 0.000891 
    42625 rotated from previous position = 0.00255 degrees 
    42626 atoms outside contour = 2701, contour level = 0.0064458 
    42627  
    42628 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    42629 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42630 Matrix rotation and translation 
    42631 0.99737361 -0.01503364 0.07085101 -75.06823109 
    42632 0.01349203 0.99966279 0.02218709 -76.65241101 
    42633 -0.07116067 -0.02117289 0.99724013 -69.12677004 
    42634 Axis -0.28677433 0.93923729 0.18866318 
    42635 Axis point -852.87740114 0.00000000 1284.96331132 
    42636 Rotation angle (degrees) 4.33566718 
    42637 Shift along axis -63.50883719 
    42638  
    42639 
    42640 > hide #!34 models
    42641 
    42642 > select clear
    42643 
    42644 Drag select of 213 residues 
    42645 
    42646 > fitmap sel inMap #34 moveWholeMolecules false
    42647 
    42648 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42649 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42650 average map value = 0.01022, steps = 64 
    42651 shifted from previous position = 0.231 
    42652 rotated from previous position = 1.38 degrees 
    42653 atoms outside contour = 713, contour level = 0.0064458 
    42654  
    42655 
    42656 > show #!34 models
    42657 
    42658 Drag select of 1 residues, 34 relion_locres_filtered_20240326_GT.mrc 
    42659 
    42660 > select clear
    42661 
    42662 > hide #!34 models
    42663 
    42664 Drag select of 213 residues 
    42665 
    42666 > show #!34 models
    42667 
    42668 > ui mousemode right "translate selected models"
    42669 
    42670 > view matrix models
    42671 > #27.1,0.9967,-0.027521,0.07635,-8.2465,0.026597,0.99956,0.013092,-2.2807,-0.076677,-0.011018,0.997,5.9858
    42672 
    42673 > view matrix models
    42674 > #27.1,0.9967,-0.027521,0.07635,-9.0898,0.026597,0.99956,0.013092,-0.98399,-0.076677,-0.011018,0.997,6.4267
    42675 
    42676 > fitmap sel inMap #34 moveWholeMolecules false
    42677 
    42678 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42679 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42680 average map value = 0.01022, steps = 64 
    42681 shifted from previous position = 1.2 
    42682 rotated from previous position = 0.169 degrees 
    42683 atoms outside contour = 716, contour level = 0.0064458 
    42684  
    42685 
    42686 > fitmap sel inMap #34 moveWholeMolecules false
    42687 
    42688 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42689 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42690 average map value = 0.01022, steps = 44 
    42691 shifted from previous position = 0.0112 
    42692 rotated from previous position = 0.073 degrees 
    42693 atoms outside contour = 714, contour level = 0.0064458 
    42694  
    42695 
    42696 > fitmap sel inMap #34 moveWholeMolecules false
    42697 
    42698 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42699 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42700 average map value = 0.01022, steps = 40 
    42701 shifted from previous position = 0.00894 
    42702 rotated from previous position = 0.0289 degrees 
    42703 atoms outside contour = 715, contour level = 0.0064458 
    42704  
    42705 
    42706 > fitmap sel inMap #34 moveWholeMolecules false
    42707 
    42708 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42709 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42710 average map value = 0.01022, steps = 44 
    42711 shifted from previous position = 0.0109 
    42712 rotated from previous position = 0.0166 degrees 
    42713 atoms outside contour = 715, contour level = 0.0064458 
    42714  
    42715 
    42716 > fitmap sel inMap #34 moveWholeMolecules false
    42717 
    42718 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42719 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42720 average map value = 0.01022, steps = 44 
    42721 shifted from previous position = 0.0115 
    42722 rotated from previous position = 0.0685 degrees 
    42723 atoms outside contour = 715, contour level = 0.0064458 
    42724  
    42725 
    42726 > fitmap sel inMap #34 moveWholeMolecules false
    42727 
    42728 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42729 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42730 average map value = 0.01022, steps = 44 
    42731 shifted from previous position = 0.0099 
    42732 rotated from previous position = 0.0603 degrees 
    42733 atoms outside contour = 715, contour level = 0.0064458 
    42734  
    42735 
    42736 > fitmap sel inMap #34 moveWholeMolecules false
    42737 
    42738 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42739 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42740 average map value = 0.01022, steps = 44 
    42741 shifted from previous position = 0.0113 
    42742 rotated from previous position = 0.0415 degrees 
    42743 atoms outside contour = 715, contour level = 0.0064458 
    42744  
    42745 
    42746 > fitmap #27.1 inMap #34
    42747 
    42748 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42749 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    42750 average map value = 0.009076, steps = 48 
    42751 shifted from previous position = 0.846 
    42752 rotated from previous position = 0.813 degrees 
    42753 atoms outside contour = 2693, contour level = 0.0064458 
    42754  
    42755 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    42756 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42757 Matrix rotation and translation 
    42758 0.99697850 -0.00319250 0.07761238 -77.02470711 
    42759 0.00184708 0.99984689 0.01740065 -75.52589375 
    42760 -0.07765605 -0.01720472 0.99683175 -69.23099659 
    42761 Axis -0.21742804 0.97556263 0.03166404 
    42762 Axis point -913.19688324 0.00000000 1122.51320803 
    42763 Rotation angle (degrees) 4.56436218 
    42764 Shift along axis -59.12504170 
    42765  
    42766 
    42767 > fitmap #27.1 inMap #34
    42768 
    42769 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42770 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    42771 average map value = 0.009076, steps = 44 
    42772 shifted from previous position = 0.0308 
    42773 rotated from previous position = 0.0897 degrees 
    42774 atoms outside contour = 2689, contour level = 0.0064458 
    42775  
    42776 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    42777 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42778 Matrix rotation and translation 
    42779 0.99686897 -0.00260304 0.07902841 -77.33100146 
    42780 0.00121206 0.99984360 0.01764388 -75.55803998 
    42781 -0.07906198 -0.01749285 0.99671621 -69.14792570 
    42782 Axis -0.21690282 0.97590907 0.02355103 
    42783 Axis point -902.98601924 0.00000000 1103.56131090 
    42784 Rotation angle (degrees) 4.64584567 
    42785 Shift along axis -58.59296883 
    42786  
    42787 
    42788 > fitmap sel inMap #34 moveWholeMolecules false
    42789 
    42790 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42791 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42792 average map value = 0.01022, steps = 68 
    42793 shifted from previous position = 0.456 
    42794 rotated from previous position = 0.855 degrees 
    42795 atoms outside contour = 715, contour level = 0.0064458 
    42796  
    42797 
    42798 > fitmap sel inMap #34 moveWholeMolecules false
    42799 
    42800 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42801 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42802 average map value = 0.01022, steps = 44 
    42803 shifted from previous position = 0.0348 
    42804 rotated from previous position = 0.0347 degrees 
    42805 atoms outside contour = 717, contour level = 0.0064458 
    42806  
    42807 
    42808 > fitmap sel inMap #34 moveWholeMolecules false
    42809 
    42810 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42811 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42812 average map value = 0.01022, steps = 40 
    42813 shifted from previous position = 0.0284 
    42814 rotated from previous position = 0.0451 degrees 
    42815 atoms outside contour = 716, contour level = 0.0064458 
    42816  
    42817 
    42818 > fitmap sel inMap #34 moveWholeMolecules false
    42819 
    42820 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42821 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42822 average map value = 0.01022, steps = 44 
    42823 shifted from previous position = 0.0273 
    42824 rotated from previous position = 0.0318 degrees 
    42825 atoms outside contour = 715, contour level = 0.0064458 
    42826  
    42827 
    42828 > fitmap sel inMap #34 moveWholeMolecules false
    42829 
    42830 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42831 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42832 average map value = 0.01022, steps = 60 
    42833 shifted from previous position = 0.0254 
    42834 rotated from previous position = 0.0716 degrees 
    42835 atoms outside contour = 715, contour level = 0.0064458 
    42836  
    42837 
    42838 > fitmap #27.1 inMap #34
    42839 
    42840 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42841 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    42842 average map value = 0.00912, steps = 48 
    42843 shifted from previous position = 0.259 
    42844 rotated from previous position = 0.482 degrees 
    42845 atoms outside contour = 2671, contour level = 0.0064458 
    42846  
    42847 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    42848 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42849 Matrix rotation and translation 
    42850 0.99623283 0.00017687 0.08671860 -78.98362762 
    42851 -0.00185569 0.99981242 0.01927914 -75.96257392 
    42852 -0.08669893 -0.01936744 0.99604628 -68.64358733 
    42853 Axis -0.21750268 0.97599269 -0.01143919 
    42854 Axis point -845.44396193 0.00000000 1014.97033683 
    42855 Rotation angle (degrees) 5.09696944 
    42856 Shift along axis -56.17453882 
    42857  
    42858 
    42859 > fitmap #27.1 inMap #34
    42860 
    42861 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42862 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    42863 average map value = 0.00912, steps = 64 
    42864 shifted from previous position = 0.037 
    42865 rotated from previous position = 0.0375 degrees 
    42866 atoms outside contour = 2678, contour level = 0.0064458 
    42867  
    42868 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    42869 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42870 Matrix rotation and translation 
    42871 0.99623632 0.00063876 0.08667628 -79.01861460 
    42872 -0.00227493 0.99982106 0.01877938 -75.84138965 
    42873 -0.08664878 -0.01890588 0.99605951 -68.70039236 
    42874 Axis -0.21243277 0.97703764 -0.01642454 
    42875 Axis point -849.55401410 0.00000000 1012.46591456 
    42876 Rotation angle (degrees) 5.08878185 
    42877 Shift along axis -56.18537721 
    42878  
    42879 
    42880 > fitmap sel inMap #34 moveWholeMolecules false
    42881 
    42882 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42883 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42884 average map value = 0.01022, steps = 40 
    42885 shifted from previous position = 0.127 
    42886 rotated from previous position = 0.39 degrees 
    42887 atoms outside contour = 715, contour level = 0.0064458 
    42888  
    42889 
    42890 > fitmap sel inMap #34 moveWholeMolecules false
    42891 
    42892 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42893 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42894 average map value = 0.01022, steps = 44 
    42895 shifted from previous position = 0.0109 
    42896 rotated from previous position = 0.15 degrees 
    42897 atoms outside contour = 716, contour level = 0.0064458 
    42898  
    42899 
    42900 > fitmap sel inMap #34 moveWholeMolecules false
    42901 
    42902 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42903 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42904 average map value = 0.01022, steps = 44 
    42905 shifted from previous position = 0.0044 
    42906 rotated from previous position = 0.0418 degrees 
    42907 atoms outside contour = 715, contour level = 0.0064458 
    42908  
    42909 
    42910 > fitmap #27.1 inMap #34
    42911 
    42912 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42913 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    42914 average map value = 0.009126, steps = 40 
    42915 shifted from previous position = 0.0991 
    42916 rotated from previous position = 0.184 degrees 
    42917 atoms outside contour = 2668, contour level = 0.0064458 
    42918  
    42919 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    42920 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42921 Matrix rotation and translation 
    42922 0.99597070 0.00177957 0.08966155 -79.64525863 
    42923 -0.00346690 0.99981975 0.01866660 -75.87705675 
    42924 -0.08961217 -0.01890223 0.99579735 -68.56101837 
    42925 Axis -0.20502187 0.97833853 -0.02863122 
    42926 Axis point -828.87063691 0.00000000 978.95595835 
    42927 Rotation angle (degrees) 5.25689876 
    42928 Shift along axis -55.94144291 
    42929  
    42930 
    42931 > fitmap sel inMap #34 moveWholeMolecules false
    42932 
    42933 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42934 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42935 average map value = 0.01022, steps = 44 
    42936 shifted from previous position = 0.0905 
    42937 rotated from previous position = 0.143 degrees 
    42938 atoms outside contour = 715, contour level = 0.0064458 
    42939  
    42940 
    42941 > fitmap sel inMap #34 moveWholeMolecules false
    42942 
    42943 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42944 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42945 average map value = 0.01022, steps = 44 
    42946 shifted from previous position = 0.0183 
    42947 rotated from previous position = 0.0546 degrees 
    42948 atoms outside contour = 716, contour level = 0.0064458 
    42949  
    42950 
    42951 > fitmap sel inMap #34 moveWholeMolecules false
    42952 
    42953 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42954 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42955 average map value = 0.01022, steps = 60 
    42956 shifted from previous position = 0.0197 
    42957 rotated from previous position = 0.0756 degrees 
    42958 atoms outside contour = 716, contour level = 0.0064458 
    42959  
    42960 
    42961 > fitmap #27.1 inMap #34
    42962 
    42963 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42964 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    42965 average map value = 0.009129, steps = 40 
    42966 shifted from previous position = 0.051 
    42967 rotated from previous position = 0.123 degrees 
    42968 atoms outside contour = 2667, contour level = 0.0064458 
    42969  
    42970 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    42971 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    42972 Matrix rotation and translation 
    42973 0.99580165 0.00255344 0.09150166 -80.01967767 
    42974 -0.00420302 0.99983203 0.01783972 -75.76301892 
    42975 -0.09144073 -0.01814941 0.99564511 -68.54407390 
    42976 Axis -0.19289763 0.98055039 -0.03621386 
    42977 Axis point -817.44879003 0.00000000 955.84816463 
    42978 Rotation angle (degrees) 5.35265165 
    42979 Shift along axis -56.37160562 
    42980  
    42981 
    42982 > fitmap sel inMap #34 moveWholeMolecules false
    42983 
    42984 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42985 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42986 average map value = 0.01022, steps = 48 
    42987 shifted from previous position = 0.0962 
    42988 rotated from previous position = 0.132 degrees 
    42989 atoms outside contour = 716, contour level = 0.0064458 
    42990  
    42991 
    42992 > fitmap sel inMap #34 moveWholeMolecules false
    42993 
    42994 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    42995 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    42996 average map value = 0.01022, steps = 48 
    42997 shifted from previous position = 0.0434 
    42998 rotated from previous position = 0.0993 degrees 
    42999 atoms outside contour = 715, contour level = 0.0064458 
    43000  
    43001 
    43002 > fitmap sel inMap #34 moveWholeMolecules false
    43003 
    43004 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    43005 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    43006 average map value = 0.01022, steps = 40 
    43007 shifted from previous position = 0.0133 
    43008 rotated from previous position = 0.0949 degrees 
    43009 atoms outside contour = 716, contour level = 0.0064458 
    43010  
    43011 
    43012 > fitmap sel inMap #34 moveWholeMolecules false
    43013 
    43014 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    43015 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    43016 average map value = 0.01022, steps = 40 
    43017 shifted from previous position = 0.0188 
    43018 rotated from previous position = 0.0254 degrees 
    43019 atoms outside contour = 715, contour level = 0.0064458 
    43020  
    43021 
    43022 > fitmap sel inMap #34 moveWholeMolecules false
    43023 
    43024 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    43025 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    43026 average map value = 0.01022, steps = 44 
    43027 shifted from previous position = 0.0112 
    43028 rotated from previous position = 0.0716 degrees 
    43029 atoms outside contour = 715, contour level = 0.0064458 
    43030  
    43031 
    43032 > fitmap sel inMap #34 moveWholeMolecules false
    43033 
    43034 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    43035 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    43036 average map value = 0.01022, steps = 48 
    43037 shifted from previous position = 0.0402 
    43038 rotated from previous position = 0.0381 degrees 
    43039 atoms outside contour = 714, contour level = 0.0064458 
    43040  
    43041 
    43042 > fitmap sel inMap #34 moveWholeMolecules false
    43043 
    43044 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    43045 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    43046 average map value = 0.01022, steps = 48 
    43047 shifted from previous position = 0.0399 
    43048 rotated from previous position = 0.0162 degrees 
    43049 atoms outside contour = 716, contour level = 0.0064458 
    43050  
    43051 
    43052 > fitmap sel inMap #34 moveWholeMolecules false
    43053 
    43054 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    43055 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    43056 average map value = 0.01022, steps = 40 
    43057 shifted from previous position = 0.00454 
    43058 rotated from previous position = 0.0271 degrees 
    43059 atoms outside contour = 715, contour level = 0.0064458 
    43060  
    43061 
    43062 > fitmap sel inMap #34 moveWholeMolecules false
    43063 
    43064 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    43065 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    43066 average map value = 0.01022, steps = 40 
    43067 shifted from previous position = 0.000868 
    43068 rotated from previous position = 0.00269 degrees 
    43069 atoms outside contour = 715, contour level = 0.0064458 
    43070  
    43071 
    43072 > fitmap sel inMap #34 moveWholeMolecules false
    43073 
    43074 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    43075 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    43076 average map value = 0.01022, steps = 44 
    43077 shifted from previous position = 0.00921 
    43078 rotated from previous position = 0.0187 degrees 
    43079 atoms outside contour = 715, contour level = 0.0064458 
    43080  
    43081 
    43082 > fitmap sel inMap #34 moveWholeMolecules false
    43083 
    43084 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    43085 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    43086 average map value = 0.01022, steps = 40 
    43087 shifted from previous position = 0.0172 
    43088 rotated from previous position = 0.0878 degrees 
    43089 atoms outside contour = 715, contour level = 0.0064458 
    43090  
    43091 
    43092 > fitmap #27.1 inMap #34
    43093 
    43094 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    43095 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    43096 average map value = 0.009129, steps = 36 
    43097 shifted from previous position = 0.0299 
    43098 rotated from previous position = 0.127 degrees 
    43099 atoms outside contour = 2669, contour level = 0.0064458 
    43100  
    43101 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    43102 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43103 Matrix rotation and translation 
    43104 0.99565516 0.00325095 0.09306036 -80.33588472 
    43105 -0.00479502 0.99985445 0.01637330 -75.49861006 
    43106 -0.09299359 -0.01674838 0.99552583 -68.61163257 
    43107 Axis -0.17510766 0.98362995 -0.04253743 
    43108 Axis point -808.91233658 0.00000000 933.27466357 
    43109 Rotation angle (degrees) 5.42686925 
    43110 Shift along axis -57.27670241 
    43111  
    43112 
    43113 > fitmap #27.1 inMap #34
    43114 
    43115 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    43116 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    43117 average map value = 0.009129, steps = 80 
    43118 shifted from previous position = 0.00424 
    43119 rotated from previous position = 0.0159 degrees 
    43120 atoms outside contour = 2672, contour level = 0.0064458 
    43121  
    43122 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    43123 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43124 Matrix rotation and translation 
    43125 0.99566955 0.00313415 0.09291031 -80.29974154 
    43126 -0.00469500 0.99985142 0.01658570 -75.53846381 
    43127 -0.09284452 -0.01695009 0.99553633 -68.59515076 
    43128 Axis -0.17751313 0.98324548 -0.04144162 
    43129 Axis point -809.32794560 0.00000000 935.78918938 
    43130 Rotation angle (degrees) 5.42024293 
    43131 Shift along axis -57.17590105 
    43132  
    43133 
    43134 > fitmap #27.1 inMap #34
    43135 
    43136 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    43137 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    43138 average map value = 0.009129, steps = 48 
    43139 shifted from previous position = 0.0308 
    43140 rotated from previous position = 0.0142 degrees 
    43141 atoms outside contour = 2667, contour level = 0.0064458 
    43142  
    43143 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    43144 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43145 Matrix rotation and translation 
    43146 0.99566015 0.00300970 0.09301513 -80.31036379 
    43147 -0.00459013 0.99984864 0.01678183 -75.59942351 
    43148 -0.09295054 -0.01713595 0.99552326 -68.56232670 
    43149 Axis -0.17928253 0.98297714 -0.04017118 
    43150 Axis point -807.40100433 0.00000000 935.91398650 
    43151 Rotation angle (degrees) 5.42789937 
    43152 Shift along axis -57.16003031 
    43153  
    43154 
    43155 > fitmap sel inMap #34 moveWholeMolecules false
    43156 
    43157 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    43158 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    43159 average map value = 0.01022, steps = 48 
    43160 shifted from previous position = 0.0898 
    43161 rotated from previous position = 0.141 degrees 
    43162 atoms outside contour = 715, contour level = 0.0064458 
    43163  
    43164 
    43165 > fitmap sel inMap #34 moveWholeMolecules false
    43166 
    43167 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    43168 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    43169 average map value = 0.01022, steps = 40 
    43170 shifted from previous position = 0.0154 
    43171 rotated from previous position = 0.0487 degrees 
    43172 atoms outside contour = 718, contour level = 0.0064458 
    43173  
    43174 
    43175 > fitmap sel inMap #34 moveWholeMolecules false
    43176 
    43177 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    43178 relion_locres_filtered_20240326_GT.mrc (#34) using 1674 atoms 
    43179 average map value = 0.01022, steps = 52 
    43180 shifted from previous position = 0.0362 
    43181 rotated from previous position = 0.0578 degrees 
    43182 atoms outside contour = 715, contour level = 0.0064458 
    43183  
    43184 
    43185 > select add #27.1
    43186 
    43187 6538 atoms, 6591 bonds, 911 residues, 1 model selected 
    43188 
    43189 > select subtract #27.1
    43190 
    43191 Nothing selected 
    43192 
    43193 > show #27.2 models
    43194 
    43195 > fitmap #27.2 inMap #34
    43196 
    43197 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    43198 relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms 
    43199 average map value = 0.009081, steps = 44 
    43200 shifted from previous position = 0.0121 
    43201 rotated from previous position = 0.0235 degrees 
    43202 atoms outside contour = 654, contour level = 0.0064458 
    43203  
    43204 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    43205 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43206 Matrix rotation and translation 
    43207 0.98950284 0.01456273 -0.14377777 -45.78107200 
    43208 0.02414939 0.96425692 0.26386627 -113.43225746 
    43209 0.14248133 -0.26456857 0.95378328 -31.21802132 
    43210 Axis -0.87916370 -0.47625287 0.01594945 
    43211 Axis point 0.00000000 -165.26762153 238.24622898 
    43212 Rotation angle (degrees) 17.48959966 
    43213 Shift along axis 93.77358484 
    43214  
    43215 
    43216 > fitmap #27.2 inMap #34
    43217 
    43218 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    43219 relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms 
    43220 average map value = 0.009081, steps = 48 
    43221 shifted from previous position = 0.00735 
    43222 rotated from previous position = 0.0304 degrees 
    43223 atoms outside contour = 655, contour level = 0.0064458 
    43224  
    43225 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    43226 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43227 Matrix rotation and translation 
    43228 0.98957324 0.01436562 -0.14331239 -45.83372764 
    43229 0.02419385 0.96429592 0.26371963 -113.40796082 
    43230 0.14198405 -0.26443716 0.95389387 -31.25289470 
    43231 Axis -0.87972357 -0.47520359 0.01637037 
    43232 Axis point 0.00000000 -165.61758530 238.76706811 
    43233 Rotation angle (degrees) 17.46861769 
    43234 Shift along axis 93.70125911 
    43235  
    43236 
    43237 > fitmap #27.2 inMap #34
    43238 
    43239 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    43240 relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms 
    43241 average map value = 0.009081, steps = 48 
    43242 shifted from previous position = 0.00376 
    43243 rotated from previous position = 0.02 degrees 
    43244 atoms outside contour = 654, contour level = 0.0064458 
    43245  
    43246 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    43247 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43248 Matrix rotation and translation 
    43249 0.98958048 0.01458074 -0.14324060 -45.88233885 
    43250 0.02400733 0.96422242 0.26400525 -113.44903982 
    43251 0.14196519 -0.26469327 0.95382564 -31.20027553 
    43252 Axis -0.87999979 -0.47471486 0.01569022 
    43253 Axis point 0.00000000 -165.08561338 238.78900449 
    43254 Rotation angle (degrees) 17.48144690 
    43255 Shift along axis 93.74285376 
    43256  
    43257 
    43258 > hide #!29 models
    43259 
    43260 > show #!29 models
    43261 
    43262 > fitmap #29 inMap #34
    43263 
    43264 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) to map
    43265 relion_locres_filtered_20240326_GT.mrc (#34) using 2069 atoms 
    43266 average map value = 0.01228, steps = 28 
    43267 shifted from previous position = 0.0214 
    43268 rotated from previous position = 0.0489 degrees 
    43269 atoms outside contour = 765, contour level = 0.0064458 
    43270  
    43271 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) relative
    43272 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43273 Matrix rotation and translation 
    43274 -0.55837192 -0.72641866 0.40067033 245.13415111 
    43275 -0.44707968 -0.14334516 -0.88293370 214.36498407 
    43276 0.69881367 -0.67213695 -0.24472711 213.96241331 
    43277 Axis 0.45851933 -0.64851326 0.60761054 
    43278 Axis point 184.77340267 0.00000000 225.16272815 
    43279 Rotation angle (degrees) 166.71076992 
    43280 Shift along axis 103.38602932 
    43281  
    43282 
    43283 > fitmap #29 inMap #34
    43284 
    43285 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) to map
    43286 relion_locres_filtered_20240326_GT.mrc (#34) using 2069 atoms 
    43287 average map value = 0.01228, steps = 40 
    43288 shifted from previous position = 0.0234 
    43289 rotated from previous position = 0.0463 degrees 
    43290 atoms outside contour = 766, contour level = 0.0064458 
    43291  
    43292 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#29) relative
    43293 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43294 Matrix rotation and translation 
    43295 -0.55871778 -0.72640821 0.40020688 245.13655175 
    43296 -0.44637102 -0.14331619 -0.88329687 214.34807082 
    43297 0.69899023 -0.67215443 -0.24417427 213.95068338 
    43298 Axis 0.45827663 -0.64849787 0.60781003 
    43299 Axis point 184.70215567 0.00000000 225.22715233 
    43300 Rotation angle (degrees) 166.68139627 
    43301 Shift along axis 103.37745705 
    43302  
    43303 
    43304 > hide #!29 models
    43305 
    43306 > show #!29 models
    43307 
    43308 > hide #28 models
    43309 
    43310 > show #28 models
    43311 
    43312 > fitmap #28 inMap #34
    43313 
    43314 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) to map
    43315 relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms 
    43316 average map value = 0.007773, steps = 48 
    43317 shifted from previous position = 0.0338 
    43318 rotated from previous position = 0.0799 degrees 
    43319 atoms outside contour = 478, contour level = 0.0064458 
    43320  
    43321 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) relative
    43322 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43323 Matrix rotation and translation 
    43324 -0.56964807 -0.71670905 0.40228001 245.63471109 
    43325 -0.48593724 -0.10104432 -0.86813307 216.22928932 
    43326 0.66284694 -0.69001317 -0.29071592 214.86544464 
    43327 Axis 0.45555491 -0.66641932 0.59021607 
    43328 Axis point 184.94701523 0.00000000 218.18285260 
    43329 Rotation angle (degrees) 168.72619893 
    43330 Shift along axis 94.61776347 
    43331  
    43332 
    43333 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    43334 > dataset/Chimera sessions/20240406_leaf_fitting_v22.cxs"
    43335 
    43336 > show #!30 models
    43337 
    43338 > show #31.1 models
    43339 
    43340 > fitmap #31.1 inMap #34
    43341 
    43342 Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map
    43343 relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms 
    43344 average map value = 0.01025, steps = 28 
    43345 shifted from previous position = 0.0462 
    43346 rotated from previous position = 0.156 degrees 
    43347 atoms outside contour = 434, contour level = 0.0064458 
    43348  
    43349 Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to
    43350 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43351 Matrix rotation and translation 
    43352 0.97526237 0.22047467 -0.01594455 223.15731989 
    43353 -0.22022010 0.97531421 0.01628817 253.45061674 
    43354 0.01914207 -0.01237393 0.99974020 253.90603445 
    43355 Axis -0.06469745 -0.07919918 -0.99475712 
    43356 Axis point 1137.36188509 -800.30950272 0.00000000 
    43357 Rotation angle (degrees) 12.79766331 
    43358 Shift along axis -287.08562568 
    43359  
    43360 
    43361 > hide #!31 models
    43362 
    43363 > show #!31 models
    43364 
    43365 > hide #!31 models
    43366 
    43367 > show #!31 models
    43368 
    43369 > hide #!31 models
    43370 
    43371 > show #!31 models
    43372 
    43373 > color #31 #fffb00ff models
    43374 
    43375 > combine 31
    43376 
    43377 Expected a keyword 
    43378 
    43379 > combine #31
    43380 
    43381 > ui tool show Matchmaker
    43382 
    43383 > matchmaker #39 to #28
    43384 
    43385 Parameters 
    43386 --- 
    43387 Chain pairing | bb 
    43388 Alignment algorithm | Needleman-Wunsch 
    43389 Similarity matrix | BLOSUM-62 
    43390 SS fraction | 0.3 
    43391 Gap open (HH/SS/other) | 18/18/6 
    43392 Gap extend | 1 
    43393 SS matrix |  |  | H | S | O 
    43394 ---|---|---|--- 
    43395 H | 6 | -9 | -6 
    43396 S |  | 6 | -6 
    43397 O |  |  | 4 
    43398 Iteration cutoff | 2 
    43399  
    43400 Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C, chain C (#28)
    43401 with copy of 5mc7_human_zeta1COPI.cif A, chain A (#39), sequence alignment
    43402 score = 650.6 
    43403 RMSD between 129 pruned atom pairs is 0.558 angstroms; (across all 135 pairs:
    43404 1.041) 
    43405  
    43406 
    43407 > matchmaker #39 to #28
    43408 
    43409 Parameters 
    43410 --- 
    43411 Chain pairing | bb 
    43412 Alignment algorithm | Needleman-Wunsch 
    43413 Similarity matrix | BLOSUM-62 
    43414 SS fraction | 0.3 
    43415 Gap open (HH/SS/other) | 18/18/6 
    43416 Gap extend | 1 
    43417 SS matrix |  |  | H | S | O 
    43418 ---|---|---|--- 
    43419 H | 6 | -9 | -6 
    43420 S |  | 6 | -6 
    43421 O |  |  | 4 
    43422 Iteration cutoff | 2 
    43423  
    43424 Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C, chain C (#28)
    43425 with copy of 5mc7_human_zeta1COPI.cif A, chain A (#39), sequence alignment
    43426 score = 650.6 
    43427 RMSD between 129 pruned atom pairs is 0.558 angstroms; (across all 135 pairs:
    43428 1.041) 
    43429  
    43430 
    43431 > fitmap #39 inMap #34
    43432 
    43433 Fit molecule copy of 5mc7_human_zeta1COPI.cif A (#39) to map
    43434 relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms 
    43435 average map value = 0.007568, steps = 64 
    43436 shifted from previous position = 0.552 
    43437 rotated from previous position = 4.03 degrees 
    43438 atoms outside contour = 536, contour level = 0.0064458 
    43439  
    43440 Position of copy of 5mc7_human_zeta1COPI.cif A (#39) relative to
    43441 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43442 Matrix rotation and translation 
    43443 0.45323339 -0.88826503 -0.07459701 293.41129101 
    43444 0.73450969 0.41957092 -0.53334393 178.67488835 
    43445 0.50504950 0.18693706 0.84260283 234.70272149 
    43446 Axis 0.38565745 -0.31035804 0.86887641 
    43447 Axis point -122.80676595 292.32051362 0.00000000 
    43448 Rotation angle (degrees) 69.04076862 
    43449 Shift along axis 261.63072132 
    43450  
    43451 
    43452 > fitmap #39 inMap #34
    43453 
    43454 Fit molecule copy of 5mc7_human_zeta1COPI.cif A (#39) to map
    43455 relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms 
    43456 average map value = 0.007567, steps = 56 
    43457 shifted from previous position = 0.0231 
    43458 rotated from previous position = 0.0788 degrees 
    43459 atoms outside contour = 535, contour level = 0.0064458 
    43460  
    43461 Position of copy of 5mc7_human_zeta1COPI.cif A (#39) relative to
    43462 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43463 Matrix rotation and translation 
    43464 0.45367818 -0.88801865 -0.07482627 293.40168039 
    43465 0.73362359 0.41982599 -0.53436182 178.70125616 
    43466 0.50593728 0.18753399 0.84193732 234.67904282 
    43467 Axis 0.38652479 -0.31095832 0.86827617 
    43468 Axis point -123.26089371 292.36450112 0.00000000 
    43469 Rotation angle (degrees) 69.03971476 
    43470 Shift along axis 261.60460100 
    43471  
    43472 
    43473 > fitmap #39 inMap #34
    43474 
    43475 Fit molecule copy of 5mc7_human_zeta1COPI.cif A (#39) to map
    43476 relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms 
    43477 average map value = 0.007567, steps = 28 
    43478 shifted from previous position = 0.0272 
    43479 rotated from previous position = 0.0732 degrees 
    43480 atoms outside contour = 534, contour level = 0.0064458 
    43481  
    43482 Position of copy of 5mc7_human_zeta1COPI.cif A (#39) relative to
    43483 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43484 Matrix rotation and translation 
    43485 0.45363623 -0.88804369 -0.07478346 293.38456518 
    43486 0.73300647 0.41952936 -0.53544058 178.74461709 
    43487 0.50686849 0.18807849 0.84125549 234.67417154 
    43488 Axis 0.38731294 -0.31136889 0.86777768 
    43489 Axis point -123.53315687 292.27092947 0.00000000 
    43490 Rotation angle (degrees) 69.07101563 
    43491 Shift along axis 261.62113379 
    43492  
    43493 
    43494 > hide #!31 models
    43495 
    43496 > show #!31 models
    43497 
    43498 > hide #!31 models
    43499 
    43500 > show #!31 models
    43501 
    43502 > hide #!31 models
    43503 
    43504 > show #!31 models
    43505 
    43506 > hide #!31 models
    43507 
    43508 > show #!31 models
    43509 
    43510 > hide #!31 models
    43511 
    43512 > show #!31 models
    43513 
    43514 > hide #39 models
    43515 
    43516 > show #39 models
    43517 
    43518 > fitmap #39 inMap #34
    43519 
    43520 Fit molecule copy of 5mc7_human_zeta1COPI.cif A (#39) to map
    43521 relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms 
    43522 average map value = 0.007568, steps = 44 
    43523 shifted from previous position = 0.0439 
    43524 rotated from previous position = 0.146 degrees 
    43525 atoms outside contour = 536, contour level = 0.0064458 
    43526  
    43527 Position of copy of 5mc7_human_zeta1COPI.cif A (#39) relative to
    43528 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43529 Matrix rotation and translation 
    43530 0.45344620 -0.88815635 -0.07459780 293.40980917 
    43531 0.73441853 0.41975085 -0.53332789 178.66982431 
    43532 0.50499105 0.18704950 0.84261291 234.69988042 
    43533 Axis 0.38574095 -0.31035281 0.86884121 
    43534 Axis point -122.87799694 292.33760915 0.00000000 
    43535 Rotation angle (degrees) 69.02841056 
    43536 Shift along axis 261.64642428 
    43537  
    43538 
    43539 > hide #!31 models
    43540 
    43541 > show #!31 models
    43542 
    43543 > fitmap #31.1 inMap #34
    43544 
    43545 Fit molecule 5mc7_human_zeta1COPI.cif A (#31.1) to map
    43546 relion_locres_filtered_20240326_GT.mrc (#34) using 1187 atoms 
    43547 average map value = 0.01025, steps = 28 
    43548 shifted from previous position = 0.0354 
    43549 rotated from previous position = 0.114 degrees 
    43550 atoms outside contour = 436, contour level = 0.0064458 
    43551  
    43552 Position of 5mc7_human_zeta1COPI.cif A (#31.1) relative to
    43553 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43554 Matrix rotation and translation 
    43555 0.97523104 0.22046140 -0.01792165 223.17984380 
    43556 -0.22018019 0.97532115 0.01641132 253.47497719 
    43557 0.02109743 -0.01205883 0.99970470 253.85976196 
    43558 Axis -0.06422597 -0.08802336 -0.99404573 
    43559 Axis point 1125.53912289 -801.68454544 0.00000000 
    43560 Rotation angle (degrees) 12.80540595 
    43561 Shift along axis -288.99387215 
    43562  
    43563 
    43564 > fitmap #28 inMap #34
    43565 
    43566 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) to map
    43567 relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms 
    43568 average map value = 0.007771, steps = 64 
    43569 shifted from previous position = 0.0341 
    43570 rotated from previous position = 0.0862 degrees 
    43571 atoms outside contour = 477, contour level = 0.0064458 
    43572  
    43573 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) relative
    43574 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43575 Matrix rotation and translation 
    43576 -0.57010387 -0.71670663 0.40163810 245.69177739 
    43577 -0.48464318 -0.10137131 -0.86881807 216.19575528 
    43578 0.66340226 -0.68996771 -0.28955481 214.80984392 
    43579 Axis 0.45521912 -0.66625559 0.59065984 
    43580 Axis point 184.87677858 0.00000000 218.31793898 
    43581 Rotation angle (degrees) 168.67089507 
    43582 Shift along axis 94.68151187 
    43583  
    43584 
    43585 > fitmap #28 inMap #34
    43586 
    43587 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) to map
    43588 relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms 
    43589 average map value = 0.007772, steps = 44 
    43590 shifted from previous position = 0.0293 
    43591 rotated from previous position = 0.0689 degrees 
    43592 atoms outside contour = 478, contour level = 0.0064458 
    43593  
    43594 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) relative
    43595 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43596 Matrix rotation and translation 
    43597 -0.56992216 -0.71677245 0.40177850 245.65582773 
    43598 -0.48554024 -0.10070443 -0.86839466 216.24734258 
    43599 0.66290225 -0.68999700 -0.29062818 214.85494562 
    43600 Axis 0.45536928 -0.66653189 0.59023221 
    43601 Axis point 184.89711462 0.00000000 218.20500299 
    43602 Rotation angle (degrees) 168.70372386 
    43603 Shift along axis 94.54267400 
    43604  
    43605 
    43606 > fitmap #26.3 inMap #34
    43607 
    43608 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) to map
    43609 relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms 
    43610 average map value = 0.01093, steps = 48 
    43611 shifted from previous position = 0.0209 
    43612 rotated from previous position = 0.0503 degrees 
    43613 atoms outside contour = 359, contour level = 0.0064458 
    43614  
    43615 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) relative to
    43616 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43617 Matrix rotation and translation 
    43618 -0.25085728 0.19318279 -0.94855207 329.71382244 
    43619 0.71030721 0.70246559 -0.04478560 309.43561010 
    43620 0.65767339 -0.68499817 -0.31343773 214.51778716 
    43621 Axis -0.35473060 -0.88998146 0.28652960 
    43622 Axis point -6.40508156 0.00000000 232.30177959 
    43623 Rotation angle (degrees) 115.52562396 
    43624 Shift along axis -330.88583868 
    43625  
    43626 
    43627 > fitmap #26.3 inMap #34
    43628 
    43629 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) to map
    43630 relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms 
    43631 average map value = 0.01093, steps = 60 
    43632 shifted from previous position = 0.00782 
    43633 rotated from previous position = 0.0168 degrees 
    43634 atoms outside contour = 359, contour level = 0.0064458 
    43635  
    43636 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) relative to
    43637 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43638 Matrix rotation and translation 
    43639 -0.25085273 0.19345219 -0.94849836 329.72015556 
    43640 0.71028680 0.70249976 -0.04457284 309.42731387 
    43641 0.65769717 -0.68488709 -0.31363052 214.53068781 
    43642 Axis -0.35480140 -0.89000116 0.28638070 
    43643 Axis point -6.39085838 0.00000000 232.25846266 
    43644 Rotation angle (degrees) 115.53051522 
    43645 Shift along axis -330.93839267 
    43646  
    43647 
    43648 > hide #26.3 models
    43649 
    43650 > show #26.3 models
    43651 
    43652 > hide #!31 models
    43653 
    43654 > hide #39 models
    43655 
    43656 > hide #!30 models
    43657 
    43658 > show #!30 models
    43659 
    43660 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    43661 > dataset/Chimera sessions/20240406_leaf_fitting_v23.cxs"
    43662 
    43663 > show #!1 models
    43664 
    43665 > hide #!1 models
    43666 
    43667 > show #!1 models
    43668 
    43669 > hide #!1 models
    43670 
    43671 > fitmap #1 inMap #34
    43672 
    43673 Fit map postprocess_20231221.mrc in map relion_locres_filtered_20240326_GT.mrc
    43674 using 18952 points 
    43675 correlation = 0.8013, correlation about mean = 0.3883, overlap = 1.793 
    43676 steps = 48, shift = 0.0672, angle = 0.0779 degrees 
    43677  
    43678 Position of postprocess_20231221.mrc (#1) relative to
    43679 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43680 Matrix rotation and translation 
    43681 0.99987401 0.01319926 -0.00881724 48.68415658 
    43682 -0.01316607 0.99990606 0.00381232 37.99834917 
    43683 0.00886674 -0.00369575 0.99995386 34.88480185 
    43684 Axis -0.23015011 -0.54207991 -0.80819571 
    43685 Axis point 434.69758186 -2638.11488500 0.00000000 
    43686 Rotation angle (degrees) 0.93460613 
    43687 Shift along axis -59.99655265 
    43688  
    43689 
    43690 > fitmap #2 inMap #34
    43691 
    43692 Fit map emdb 3720 in map relion_locres_filtered_20240326_GT.mrc using 38639
    43693 points 
    43694 correlation = 0.729, correlation about mean = 0.1842, overlap = 101.9 
    43695 steps = 84, shift = 2.04, angle = 1.26 degrees 
    43696  
    43697 Position of emdb 3720 (#2) relative to relion_locres_filtered_20240326_GT.mrc
    43698 (#34) coordinates: 
    43699 Matrix rotation and translation 
    43700 -0.53788299 0.84160172 -0.04887165 217.95859619 
    43701 -0.84291583 -0.53782153 0.01552156 404.43379129 
    43702 -0.01322125 0.04954347 0.99868446 144.98895511 
    43703 Axis 0.02018819 -0.02115452 -0.99957237 
    43704 Axis point 220.37802412 140.14623835 0.00000000 
    43705 Rotation angle (degrees) 122.58226757 
    43706 Shift along axis -149.08236462 
    43707  
    43708 
    43709 > show #3 models
    43710 
    43711 > hide #!30 models
    43712 
    43713 > fitmap #3 inMap #34
    43714 
    43715 Fit molecule CopA_F8WHL2.pdb (#3) to map
    43716 relion_locres_filtered_20240326_GT.mrc (#34) using 9810 atoms 
    43717 average map value = 0.005549, steps = 104 
    43718 shifted from previous position = 0.0315 
    43719 rotated from previous position = 0.02 degrees 
    43720 atoms outside contour = 6054, contour level = 0.0064458 
    43721  
    43722 Position of CopA_F8WHL2.pdb (#3) relative to
    43723 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43724 Matrix rotation and translation 
    43725 0.90931116 0.39282847 0.13725523 209.68522691 
    43726 -0.21900068 0.73225360 -0.64485917 282.21469801 
    43727 -0.35382468 0.55631866 0.75187607 275.94393018 
    43728 Axis 0.83724120 0.34229097 -0.42645523 
    43729 Axis point 0.00000000 -384.59576759 515.32504904 
    43730 Rotation angle (degrees) 45.83552825 
    43731 Shift along axis 154.47892206 
    43732  
    43733 
    43734 > hide #!34 models
    43735 
    43736 > hide #27.1 models
    43737 
    43738 > hide #27.2 models
    43739 
    43740 > show #!34 models
    43741 
    43742 > ui mousemode right select
    43743 
    43744 Drag select of 132 residues 
    43745 
    43746 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    43747 > dataset/Chimera sessions/20240406_leaf_fitting_v24.cxs"
    43748 
    43749 > delete sel
    43750 
    43751 Drag select of 19 residues, 2 pseudobonds 
    43752 
    43753 > select up
    43754 
    43755 231 atoms, 234 bonds, 2 pseudobonds, 31 residues, 2 models selected 
    43756 
    43757 > select up
    43758 
    43759 456 atoms, 465 bonds, 2 pseudobonds, 59 residues, 2 models selected 
    43760 
    43761 > select up
    43762 
    43763 8735 atoms, 8933 bonds, 2 pseudobonds, 1101 residues, 2 models selected 
    43764 
    43765 > select down
    43766 
    43767 456 atoms, 465 bonds, 2 pseudobonds, 59 residues, 2 models selected 
    43768 
    43769 > delete sel
    43770 
    43771 Drag select of 56 residues, 2 pseudobonds 
    43772 
    43773 > delete sel
    43774 
    43775 Drag select of 40 residues, 3 pseudobonds 
    43776 
    43777 > select up
    43778 
    43779 1059 atoms, 1079 bonds, 3 pseudobonds, 142 residues, 2 models selected 
    43780 
    43781 > delete sel
    43782 
    43783 Drag select of 4 residues, 1 pseudobonds 
    43784 
    43785 > select up
    43786 
    43787 67 atoms, 69 bonds, 1 pseudobond, 8 residues, 2 models selected 
    43788 
    43789 > select up
    43790 
    43791 84 atoms, 86 bonds, 1 pseudobond, 11 residues, 2 models selected 
    43792 
    43793 > delete sel
    43794 
    43795 > select clear
    43796 
    43797 Drag select of 1 pseudobonds, 34 relion_locres_filtered_20240326_GT.mrc 
    43798 
    43799 > select clear
    43800 
    43801 [Repeated 1 time(s)]
    43802 
    43803 > hide #!34 models
    43804 
    43805 > hide #!35 models
    43806 
    43807 > hide #!36 models
    43808 
    43809 > fitmap #3 inMap #34
    43810 
    43811 Fit molecule CopA_F8WHL2.pdb (#3) to map
    43812 relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms 
    43813 average map value = 0.008462, steps = 48 
    43814 shifted from previous position = 0.0933 
    43815 rotated from previous position = 0.112 degrees 
    43816 atoms outside contour = 2966, contour level = 0.0064458 
    43817  
    43818 Position of CopA_F8WHL2.pdb (#3) relative to
    43819 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43820 Matrix rotation and translation 
    43821 0.90891413 0.39398824 0.13655898 209.66442425 
    43822 -0.22074322 0.73246747 -0.64402160 282.24312646 
    43823 -0.35376194 0.55521587 0.75272027 276.03816129 
    43824 Axis 0.83626314 0.34191503 -0.42867011 
    43825 Axis point 0.00000000 -385.48459251 516.88628298 
    43826 Rotation angle (degrees) 45.80912282 
    43827 Shift along axis 153.50848796 
    43828  
    43829 
    43830 > fitmap #3 inMap #34
    43831 
    43832 Fit molecule CopA_F8WHL2.pdb (#3) to map
    43833 relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms 
    43834 average map value = 0.008462, steps = 40 
    43835 shifted from previous position = 0.0321 
    43836 rotated from previous position = 0.0123 degrees 
    43837 atoms outside contour = 2960, contour level = 0.0064458 
    43838  
    43839 Position of CopA_F8WHL2.pdb (#3) relative to
    43840 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43841 Matrix rotation and translation 
    43842 0.90889368 0.39409870 0.13637625 209.68451466 
    43843 -0.22093480 0.73239839 -0.64403447 282.25152854 
    43844 -0.35369490 0.55522860 0.75274239 276.05973913 
    43845 Axis 0.83624278 0.34172524 -0.42886114 
    43846 Axis point 0.00000000 -385.45306501 517.01562421 
    43847 Rotation angle (degrees) 45.81181650 
    43848 Shift along axis 153.40833872 
    43849  
    43850 Drag select of 233 residues, 1 pseudobonds 
    43851 Drag select of 231 residues, 1 pseudobonds 
    43852 
    43853 > show #!34 models
    43854 
    43855 > fitmap sel inMap #34 moveWholeMolecules false
    43856 
    43857 Fit molecule CopA_F8WHL2.pdb (#3) to map
    43858 relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms 
    43859 average map value = 0.008823, steps = 80 
    43860 shifted from previous position = 0.687 
    43861 rotated from previous position = 3.7 degrees 
    43862 atoms outside contour = 847, contour level = 0.0064458 
    43863  
    43864 
    43865 > fitmap #3 inMap #34
    43866 
    43867 Fit molecule CopA_F8WHL2.pdb (#3) to map
    43868 relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms 
    43869 average map value = 0.008573, steps = 60 
    43870 shifted from previous position = 0.356 
    43871 rotated from previous position = 0.186 degrees 
    43872 atoms outside contour = 2928, contour level = 0.0064458 
    43873  
    43874 Position of CopA_F8WHL2.pdb (#3) relative to
    43875 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43876 Matrix rotation and translation 
    43877 0.90782578 0.39663908 0.13612418 209.93249872 
    43878 -0.22358555 0.73244000 -0.64307164 282.47841584 
    43879 -0.35477013 0.55336161 0.75361068 275.87777154 
    43880 Axis 0.83418023 0.34226258 -0.43243459 
    43881 Axis point 0.00000000 -386.65044437 518.96879030 
    43882 Rotation angle (degrees) 45.81812855 
    43883 Shift along axis 152.50423879 
    43884  
    43885 
    43886 > fitmap sel inMap #34 moveWholeMolecules false
    43887 
    43888 Fit molecule CopA_F8WHL2.pdb (#3) to map
    43889 relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms 
    43890 average map value = 0.008825, steps = 60 
    43891 shifted from previous position = 0.412 
    43892 rotated from previous position = 0.174 degrees 
    43893 atoms outside contour = 848, contour level = 0.0064458 
    43894  
    43895 
    43896 > fitmap #3 inMap #34
    43897 
    43898 Fit molecule CopA_F8WHL2.pdb (#3) to map
    43899 relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms 
    43900 average map value = 0.00859, steps = 40 
    43901 shifted from previous position = 0.164 
    43902 rotated from previous position = 0.148 degrees 
    43903 atoms outside contour = 2935, contour level = 0.0064458 
    43904  
    43905 Position of CopA_F8WHL2.pdb (#3) relative to
    43906 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43907 Matrix rotation and translation 
    43908 0.90741514 0.39774698 0.13562849 210.01402558 
    43909 -0.22549080 0.73319380 -0.64154558 282.65440494 
    43910 -0.35461479 0.55156520 0.75499945 275.86129278 
    43911 Axis 0.83284228 0.34221075 -0.43504659 
    43912 Axis point 0.00000000 -388.23814513 521.16574384 
    43913 Rotation angle (degrees) 45.74890070 
    43914 Shift along axis 151.62342015 
    43915  
    43916 
    43917 > fitmap sel inMap #34 moveWholeMolecules false
    43918 
    43919 Fit molecule CopA_F8WHL2.pdb (#3) to map
    43920 relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms 
    43921 average map value = 0.008822, steps = 48 
    43922 shifted from previous position = 0.235 
    43923 rotated from previous position = 0.144 degrees 
    43924 atoms outside contour = 846, contour level = 0.0064458 
    43925  
    43926 
    43927 > fitmap #3 inMap #34
    43928 
    43929 Fit molecule CopA_F8WHL2.pdb (#3) to map
    43930 relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms 
    43931 average map value = 0.008594, steps = 44 
    43932 shifted from previous position = 0.0769 
    43933 rotated from previous position = 0.124 degrees 
    43934 atoms outside contour = 2940, contour level = 0.0064458 
    43935  
    43936 Position of CopA_F8WHL2.pdb (#3) relative to
    43937 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43938 Matrix rotation and translation 
    43939 0.90696334 0.39875882 0.13567938 210.04607668 
    43940 -0.22688465 0.73389108 -0.64025559 282.75835838 
    43941 -0.35488145 0.54990477 0.75608457 275.85910636 
    43942 Axis 0.83153588 0.34274283 -0.43712177 
    43943 Axis point 0.00000000 -389.77558330 522.80729754 
    43944 Rotation angle (degrees) 45.69565954 
    43945 Shift along axis 150.99022935 
    43946  
    43947 
    43948 > fitmap sel inMap #34 moveWholeMolecules false
    43949 
    43950 Fit molecule CopA_F8WHL2.pdb (#3) to map
    43951 relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms 
    43952 average map value = 0.008823, steps = 48 
    43953 shifted from previous position = 0.177 
    43954 rotated from previous position = 0.129 degrees 
    43955 atoms outside contour = 846, contour level = 0.0064458 
    43956  
    43957 
    43958 > fitmap #3 inMap #34
    43959 
    43960 Fit molecule CopA_F8WHL2.pdb (#3) to map
    43961 relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms 
    43962 average map value = 0.008597, steps = 44 
    43963 shifted from previous position = 0.0361 
    43964 rotated from previous position = 0.0972 degrees 
    43965 atoms outside contour = 2946, contour level = 0.0064458 
    43966  
    43967 Position of CopA_F8WHL2.pdb (#3) relative to
    43968 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    43969 Matrix rotation and translation 
    43970 0.90682211 0.39903561 0.13580955 210.04444692 
    43971 -0.22761279 0.73474399 -0.63901774 282.82199351 
    43972 -0.35477609 0.54856343 0.75710770 275.87776428 
    43973 Axis 0.83071778 0.34316661 -0.43834306 
    43974 Axis point 0.00000000 -391.20321850 524.09410081 
    43975 Rotation angle (degrees) 45.62617198 
    43976 Shift along axis 150.61361762 
    43977  
    43978 
    43979 > fitmap sel inMap #34 moveWholeMolecules false
    43980 
    43981 Fit molecule CopA_F8WHL2.pdb (#3) to map
    43982 relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms 
    43983 average map value = 0.008824, steps = 44 
    43984 shifted from previous position = 0.123 
    43985 rotated from previous position = 0.131 degrees 
    43986 atoms outside contour = 849, contour level = 0.0064458 
    43987  
    43988 
    43989 > fitmap sel inMap #34 moveWholeMolecules false
    43990 
    43991 Fit molecule CopA_F8WHL2.pdb (#3) to map
    43992 relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms 
    43993 average map value = 0.008824, steps = 80 
    43994 shifted from previous position = 0.00593 
    43995 rotated from previous position = 0.042 degrees 
    43996 atoms outside contour = 847, contour level = 0.0064458 
    43997  
    43998 
    43999 > fitmap #3 inMap #34
    44000 
    44001 Fit molecule CopA_F8WHL2.pdb (#3) to map
    44002 relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms 
    44003 average map value = 0.008598, steps = 48 
    44004 shifted from previous position = 0.0603 
    44005 rotated from previous position = 0.0823 degrees 
    44006 atoms outside contour = 2941, contour level = 0.0064458 
    44007  
    44008 Position of CopA_F8WHL2.pdb (#3) relative to
    44009 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44010 Matrix rotation and translation 
    44011 0.90688108 0.39906542 0.13532731 210.04151195 
    44012 -0.22837904 0.73535901 -0.63803615 282.90230477 
    44013 -0.35413232 0.54771699 0.75802136 275.90663773 
    44014 Axis 0.83034228 0.34275181 -0.43937785 
    44015 Axis point 0.00000000 -392.08196933 525.36366842 
    44016 Rotation angle (degrees) 45.56250642 
    44017 Shift along axis 150.14435832 
    44018  
    44019 
    44020 > fitmap #3 inMap #34
    44021 
    44022 Fit molecule CopA_F8WHL2.pdb (#3) to map
    44023 relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms 
    44024 average map value = 0.008598, steps = 44 
    44025 shifted from previous position = 0.0329 
    44026 rotated from previous position = 0.0136 degrees 
    44027 atoms outside contour = 2938, contour level = 0.0064458 
    44028  
    44029 Position of CopA_F8WHL2.pdb (#3) relative to
    44030 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44031 Matrix rotation and translation 
    44032 0.90688255 0.39899299 0.13553090 210.02036491 
    44033 -0.22817718 0.73537741 -0.63808716 282.88222730 
    44034 -0.35425867 0.54774505 0.75794204 275.89424066 
    44035 Axis 0.83036376 0.34296885 -0.43916785 
    44036 Axis point 0.00000000 -392.07575462 525.16889116 
    44037 Rotation angle (degrees) 45.56489160 
    44038 Shift along axis 150.24921009 
    44039  
    44040 
    44041 > fitmap sel inMap #34 moveWholeMolecules false
    44042 
    44043 Fit molecule CopA_F8WHL2.pdb (#3) to map
    44044 relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms 
    44045 average map value = 0.008823, steps = 48 
    44046 shifted from previous position = 0.0934 
    44047 rotated from previous position = 0.119 degrees 
    44048 atoms outside contour = 848, contour level = 0.0064458 
    44049  
    44050 
    44051 > fitmap sel inMap #34 moveWholeMolecules false
    44052 
    44053 Fit molecule CopA_F8WHL2.pdb (#3) to map
    44054 relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms 
    44055 average map value = 0.008822, steps = 56 
    44056 shifted from previous position = 0.0149 
    44057 rotated from previous position = 0.0989 degrees 
    44058 atoms outside contour = 847, contour level = 0.0064458 
    44059  
    44060 
    44061 > fitmap #3 inMap #34
    44062 
    44063 Fit molecule CopA_F8WHL2.pdb (#3) to map
    44064 relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms 
    44065 average map value = 0.008599, steps = 40 
    44066 shifted from previous position = 0.0254 
    44067 rotated from previous position = 0.0438 degrees 
    44068 atoms outside contour = 2940, contour level = 0.0064458 
    44069  
    44070 Position of CopA_F8WHL2.pdb (#3) relative to
    44071 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44072 Matrix rotation and translation 
    44073 0.90676753 0.39927286 0.13547625 210.02601110 
    44074 -0.22866700 0.73565368 -0.63759317 282.91435028 
    44075 -0.35423725 0.54716983 0.75836740 275.91029921 
    44076 Axis 0.82994946 0.34305381 -0.43988405 
    44077 Axis point 0.00000000 -392.63867419 525.80518864 
    44078 Rotation angle (degrees) 45.54135137 
    44079 Shift along axis 149.99727922 
    44080  
    44081 
    44082 > fitmap #3 inMap #34
    44083 
    44084 Fit molecule CopA_F8WHL2.pdb (#3) to map
    44085 relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms 
    44086 average map value = 0.008599, steps = 44 
    44087 shifted from previous position = 0.00445 
    44088 rotated from previous position = 0.00461 degrees 
    44089 atoms outside contour = 2938, contour level = 0.0064458 
    44090  
    44091 Position of CopA_F8WHL2.pdb (#3) relative to
    44092 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44093 Matrix rotation and translation 
    44094 0.90673879 0.39932278 0.13552148 210.02748872 
    44095 -0.22869189 0.73566610 -0.63756992 282.91049144 
    44096 -0.35429475 0.54711671 0.75837887 275.91053727 
    44097 Axis 0.82989319 0.34312462 -0.43993499 
    44098 Axis point 0.00000000 -392.69123605 525.81905039 
    44099 Rotation angle (degrees) 45.54154641 
    44100 Shift along axis 149.99123777 
    44101  
    44102 
    44103 > fitmap sel inMap #34 moveWholeMolecules false
    44104 
    44105 Fit molecule CopA_F8WHL2.pdb (#3) to map
    44106 relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms 
    44107 average map value = 0.008821, steps = 48 
    44108 shifted from previous position = 0.0616 
    44109 rotated from previous position = 0.0475 degrees 
    44110 atoms outside contour = 848, contour level = 0.0064458 
    44111  
    44112 
    44113 > fitmap sel inMap #34 moveWholeMolecules false
    44114 
    44115 Fit molecule CopA_F8WHL2.pdb (#3) to map
    44116 relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms 
    44117 average map value = 0.008823, steps = 44 
    44118 shifted from previous position = 0.0268 
    44119 rotated from previous position = 0.0406 degrees 
    44120 atoms outside contour = 847, contour level = 0.0064458 
    44121  
    44122 
    44123 > fitmap #3 inMap #34
    44124 
    44125 Fit molecule CopA_F8WHL2.pdb (#3) to map
    44126 relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms 
    44127 average map value = 0.008599, steps = 40 
    44128 shifted from previous position = 0.034 
    44129 rotated from previous position = 0.0427 degrees 
    44130 atoms outside contour = 2943, contour level = 0.0064458 
    44131  
    44132 Position of CopA_F8WHL2.pdb (#3) relative to
    44133 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44134 Matrix rotation and translation 
    44135 0.90665202 0.39949242 0.13560201 210.04475273 
    44136 -0.22902990 0.73601982 -0.63704012 282.95219416 
    44137 -0.35429846 0.54651680 0.75880957 275.92432789 
    44138 Axis 0.82949980 0.34334837 -0.44050196 
    44139 Axis point 0.00000000 -393.33709858 526.40128539 
    44140 Rotation angle (degrees) 45.51353794 
    44141 Shift along axis 149.83804876 
    44142  
    44143 
    44144 > fitmap sel inMap #34 moveWholeMolecules false
    44145 
    44146 Fit molecule CopA_F8WHL2.pdb (#3) to map
    44147 relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms 
    44148 average map value = 0.008823, steps = 48 
    44149 shifted from previous position = 0.0706 
    44150 rotated from previous position = 0.0499 degrees 
    44151 atoms outside contour = 846, contour level = 0.0064458 
    44152  
    44153 
    44154 > fitmap sel inMap #34 moveWholeMolecules false
    44155 
    44156 Fit molecule CopA_F8WHL2.pdb (#3) to map
    44157 relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms 
    44158 average map value = 0.008824, steps = 60 
    44159 shifted from previous position = 0.0283 
    44160 rotated from previous position = 0.0283 degrees 
    44161 atoms outside contour = 849, contour level = 0.0064458 
    44162  
    44163 
    44164 > fitmap #3 inMap #34
    44165 
    44166 Fit molecule CopA_F8WHL2.pdb (#3) to map
    44167 relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms 
    44168 average map value = 0.0086, steps = 44 
    44169 shifted from previous position = 0.0265 
    44170 rotated from previous position = 0.0385 degrees 
    44171 atoms outside contour = 2936, contour level = 0.0064458 
    44172  
    44173 Position of CopA_F8WHL2.pdb (#3) relative to
    44174 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44175 Matrix rotation and translation 
    44176 0.90667083 0.39942373 0.13567862 210.02682489 
    44177 -0.22917090 0.73642362 -0.63652254 282.97962825 
    44178 -0.35415915 0.54602283 0.75923010 275.91354666 
    44179 Axis 0.82927246 0.34350392 -0.44080863 
    44180 Axis point 0.00000000 -393.88759641 526.86229212 
    44181 Rotation angle (degrees) 45.47967159 
    44182 Shift along axis 149.74899838 
    44183  
    44184 
    44185 > fitmap sel inMap #34 moveWholeMolecules false
    44186 
    44187 Fit molecule CopA_F8WHL2.pdb (#3) to map
    44188 relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms 
    44189 average map value = 0.008822, steps = 48 
    44190 shifted from previous position = 0.0331 
    44191 rotated from previous position = 0.0295 degrees 
    44192 atoms outside contour = 843, contour level = 0.0064458 
    44193  
    44194 
    44195 > fitmap sel inMap #34 moveWholeMolecules false
    44196 
    44197 Fit molecule CopA_F8WHL2.pdb (#3) to map
    44198 relion_locres_filtered_20240326_GT.mrc (#34) using 1842 atoms 
    44199 average map value = 0.008824, steps = 48 
    44200 shifted from previous position = 0.0413 
    44201 rotated from previous position = 0.0398 degrees 
    44202 atoms outside contour = 847, contour level = 0.0064458 
    44203  
    44204 
    44205 > hide #!3 models
    44206 
    44207 > show #!3 models
    44208 
    44209 > show #7 models
    44210 
    44211 > fitmap #7 inMap #34
    44212 
    44213 Fit molecule CopBprime_O55029.pdb (#7) to map
    44214 relion_locres_filtered_20240326_GT.mrc (#34) using 7214 atoms 
    44215 average map value = 0.008398, steps = 44 
    44216 shifted from previous position = 0.0137 
    44217 rotated from previous position = 0.0314 degrees 
    44218 atoms outside contour = 3252, contour level = 0.0064458 
    44219  
    44220 Position of CopBprime_O55029.pdb (#7) relative to
    44221 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44222 Matrix rotation and translation 
    44223 -0.13434959 -0.22741189 -0.96448640 237.13674547 
    44224 -0.00067690 -0.97328915 0.22958174 213.64254218 
    44225 -0.99093376 0.03149708 0.13060707 275.37371608 
    44226 Axis -0.65540036 0.08750608 0.75019535 
    44227 Axis point 228.34566768 105.09095173 0.00000000 
    44228 Rotation angle (degrees) 171.30831886 
    44229 Shift along axis 69.85959355 
    44230  
    44231 
    44232 > fitmap #7 inMap #34
    44233 
    44234 Fit molecule CopBprime_O55029.pdb (#7) to map
    44235 relion_locres_filtered_20240326_GT.mrc (#34) using 7214 atoms 
    44236 average map value = 0.008399, steps = 40 
    44237 shifted from previous position = 0.00753 
    44238 rotated from previous position = 0.021 degrees 
    44239 atoms outside contour = 3254, contour level = 0.0064458 
    44240  
    44241 Position of CopBprime_O55029.pdb (#7) relative to
    44242 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44243 Matrix rotation and translation 
    44244 -0.13415323 -0.22756384 -0.96447789 237.13727833 
    44245 -0.00038925 -0.97326354 0.22969092 213.64331424 
    44246 -0.99096052 0.03118920 0.13047787 275.38173050 
    44247 Axis -0.65546554 0.08744736 0.75014524 
    44248 Axis point 228.34699349 105.12967021 0.00000000 
    44249 Rotation angle (degrees) 171.29074998 
    44250 Shift along axis 69.82352552 
    44251  
    44252 
    44253 > hide #!3 models
    44254 
    44255 > select add #3
    44256 
    44257 6692 atoms, 6847 bonds, 1 pseudobond, 833 residues, 2 models selected 
    44258 
    44259 > select subtract #3
    44260 
    44261 Nothing selected 
    44262 
    44263 > show #!3 models
    44264 
    44265 > hide #!34 models
    44266 
    44267 > hide #!3 models
    44268 
    44269 Drag select of 14 residues 
    44270 
    44271 > select up
    44272 
    44273 519 atoms, 525 bonds, 67 residues, 1 model selected 
    44274 
    44275 > show #!34 models
    44276 
    44277 > hide #!34 models
    44278 
    44279 > delete sel
    44280 
    44281 > show #!34 models
    44282 
    44283 > hide #!34 models
    44284 
    44285 > show #27.1 models
    44286 
    44287 > hide #27.1 models
    44288 
    44289 > hide #7 models
    44290 
    44291 > show #!34 models
    44292 
    44293 > show #4 models
    44294 
    44295 > hide #!34 models
    44296 
    44297 > hide #24 models
    44298 
    44299 > hide #26.3 models
    44300 
    44301 > show #26.3 models
    44302 
    44303 > color #26.3 #fffb00ff
    44304 
    44305 > color #28 #fffb00ff
    44306 
    44307 > hide #28 models
    44308 
    44309 > hide #26.3 models
    44310 
    44311 > hide #!26.2 models
    44312 
    44313 > hide #!26.1 models
    44314 
    44315 > hide #!29 models
    44316 
    44317 > hide #!37 models
    44318 
    44319 > hide #38 models
    44320 
    44321 > show #!34 models
    44322 
    44323 > hide #!34 models
    44324 
    44325 Drag select of 24 residues 
    44326 
    44327 > select up
    44328 
    44329 290 atoms, 293 bonds, 39 residues, 1 model selected 
    44330 
    44331 > delete sel
    44332 
    44333 > show #!34 models
    44334 
    44335 > fitmap #7 inMap #34
    44336 
    44337 Fit molecule CopBprime_O55029.pdb (#7) to map
    44338 relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms 
    44339 average map value = 0.009017, steps = 60 
    44340 shifted from previous position = 0.123 
    44341 rotated from previous position = 0.437 degrees 
    44342 atoms outside contour = 2761, contour level = 0.0064458 
    44343  
    44344 Position of CopBprime_O55029.pdb (#7) relative to
    44345 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44346 Matrix rotation and translation 
    44347 -0.13064107 -0.23172439 -0.96396925 237.19381792 
    44348 0.00542688 -0.97245471 0.23302870 213.64056466 
    44349 -0.99141488 0.02521178 0.12830006 275.50575861 
    44350 Axis -0.65657806 0.08671188 0.74925716 
    44351 Axis point 228.27663105 105.89736307 0.00000000 
    44352 Rotation angle (degrees) 170.89422511 
    44353 Shift along axis 69.21358119 
    44354  
    44355 
    44356 > fitmap #7 inMap #34
    44357 
    44358 Fit molecule CopBprime_O55029.pdb (#7) to map
    44359 relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms 
    44360 average map value = 0.009016, steps = 44 
    44361 shifted from previous position = 0.0356 
    44362 rotated from previous position = 0.0263 degrees 
    44363 atoms outside contour = 2757, contour level = 0.0064458 
    44364  
    44365 Position of CopBprime_O55029.pdb (#7) relative to
    44366 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44367 Matrix rotation and translation 
    44368 -0.13091454 -0.23172608 -0.96393174 237.20189942 
    44369 0.00506406 -0.97244331 0.23308446 213.62990233 
    44370 -0.99138072 0.02563274 0.12848044 275.47151700 
    44371 Axis -0.65648217 0.08686245 0.74932374 
    44372 Axis point 228.25761396 105.84342594 0.00000000 
    44373 Rotation angle (degrees) 170.90902340 
    44374 Shift along axis 69.25494684 
    44375  
    44376 
    44377 > hide #!34 models
    44378 
    44379 Drag select of 150 residues 
    44380 
    44381 > select up
    44382 
    44383 1453 atoms, 1469 bonds, 190 residues, 1 model selected 
    44384 
    44385 > select up
    44386 
    44387 3240 atoms, 3289 bonds, 418 residues, 1 model selected 
    44388 
    44389 > show #!34 models
    44390 
    44391 > fitmap sel inMap #34 moveWholeMolecules false
    44392 
    44393 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44394 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44395 average map value = 0.008342, steps = 64 
    44396 shifted from previous position = 5.22 
    44397 rotated from previous position = 5.34 degrees 
    44398 atoms outside contour = 1418, contour level = 0.0064458 
    44399  
    44400 
    44401 > fitmap #7 inMap #34
    44402 
    44403 Fit molecule CopBprime_O55029.pdb (#7) to map
    44404 relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms 
    44405 average map value = 0.009016, steps = 44 
    44406 shifted from previous position = 0.0137 
    44407 rotated from previous position = 0.0449 degrees 
    44408 atoms outside contour = 2763, contour level = 0.0064458 
    44409  
    44410 Position of CopBprime_O55029.pdb (#7) relative to
    44411 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44412 Matrix rotation and translation 
    44413 -0.13036235 -0.23227560 -0.96387432 237.21373396 
    44414 0.00520236 -0.97231728 0.23360658 213.62030736 
    44415 -0.99145277 0.02543909 0.12796194 275.47829542 
    44416 Axis -0.65667635 0.08699781 0.74913787 
    44417 Axis point 228.29490270 105.85984525 -0.00000000 
    44418 Rotation angle (degrees) 170.88011010 
    44419 Shift along axis 69.18307299 
    44420  
    44421 
    44422 > fitmap #7 inMap #34
    44423 
    44424 Fit molecule CopBprime_O55029.pdb (#7) to map
    44425 relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms 
    44426 average map value = 0.009016, steps = 44 
    44427 shifted from previous position = 0.00151 
    44428 rotated from previous position = 0.00331 degrees 
    44429 atoms outside contour = 2764, contour level = 0.0064458 
    44430  
    44431 Position of CopBprime_O55029.pdb (#7) relative to
    44432 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44433 Matrix rotation and translation 
    44434 -0.13036477 -0.23227317 -0.96387457 237.21452052 
    44435 0.00514485 -0.97231638 0.23361162 213.62130287 
    44436 -0.99145275 0.02549573 0.12795081 275.47904292 
    44437 Axis -0.65667680 0.08701857 0.74913507 
    44438 Axis point 228.29894049 105.85286174 0.00000000 
    44439 Rotation angle (degrees) 170.88239700 
    44440 Shift along axis 69.18675920 
    44441  
    44442 
    44443 > fitmap #4 inMap #34
    44444 
    44445 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44446 relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms 
    44447 average map value = 0.008817, steps = 68 
    44448 shifted from previous position = 1.01 
    44449 rotated from previous position = 1.21 degrees 
    44450 atoms outside contour = 3254, contour level = 0.0064458 
    44451  
    44452 Position of CopB_Q9JIF7.pdb (#4) relative to
    44453 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44454 Matrix rotation and translation 
    44455 -0.01860980 -0.70776039 0.70620741 220.19799781 
    44456 -0.05500565 0.70598475 0.70608775 242.11894872 
    44457 -0.99831260 -0.02570525 -0.05206905 272.56837572 
    44458 Axis -0.37213564 0.86679245 0.33194264 
    44459 Axis point 258.04675243 0.00000000 -54.69162162 
    44460 Rotation angle (degrees) 100.50649879 
    44461 Shift along axis 218.40042051 
    44462  
    44463 
    44464 > fitmap sel inMap #34 moveWholeMolecules false
    44465 
    44466 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44467 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44468 average map value = 0.008342, steps = 64 
    44469 shifted from previous position = 1.1 
    44470 rotated from previous position = 1.22 degrees 
    44471 atoms outside contour = 1420, contour level = 0.0064458 
    44472  
    44473 
    44474 > fitmap #4 inMap #34
    44475 
    44476 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44477 relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms 
    44478 average map value = 0.008962, steps = 64 
    44479 shifted from previous position = 0.523 
    44480 rotated from previous position = 0.82 degrees 
    44481 atoms outside contour = 3212, contour level = 0.0064458 
    44482  
    44483 Position of CopB_Q9JIF7.pdb (#4) relative to
    44484 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44485 Matrix rotation and translation 
    44486 -0.02017469 -0.71402417 0.69983032 220.34435012 
    44487 -0.04411501 0.69992680 0.71285086 241.61952198 
    44488 -0.99882273 -0.01649148 -0.04561999 272.54737727 
    44489 Axis -0.37093054 0.86390474 0.34070388 
    44490 Axis point 257.10995134 0.00000000 -56.58617768 
    44491 Rotation angle (degrees) 100.54070073 
    44492 Shift along axis 219.86175039 
    44493  
    44494 
    44495 > fitmap sel inMap #34 moveWholeMolecules false
    44496 
    44497 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44498 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44499 average map value = 0.008342, steps = 60 
    44500 shifted from previous position = 0.653 
    44501 rotated from previous position = 0.827 degrees 
    44502 atoms outside contour = 1418, contour level = 0.0064458 
    44503  
    44504 
    44505 > fitmap #4 inMap #34
    44506 
    44507 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44508 relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms 
    44509 average map value = 0.00902, steps = 84 
    44510 shifted from previous position = 0.269 
    44511 rotated from previous position = 0.578 degrees 
    44512 atoms outside contour = 3184, contour level = 0.0064458 
    44513  
    44514 Position of CopB_Q9JIF7.pdb (#4) relative to
    44515 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44516 Matrix rotation and translation 
    44517 -0.02126238 -0.71809220 0.69562310 220.37093889 
    44518 -0.03610653 0.69587804 0.71725175 241.37668426 
    44519 -0.99912173 -0.00986606 -0.04072384 272.58927506 
    44520 Axis -0.36980760 0.86193669 0.34685368 
    44521 Axis point 256.39793623 0.00000000 -57.91605031 
    44522 Rotation angle (degrees) 100.54770288 
    44523 Shift along axis 221.10516606 
    44524  
    44525 
    44526 > fitmap sel inMap #34 moveWholeMolecules false
    44527 
    44528 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44529 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44530 average map value = 0.008342, steps = 48 
    44531 shifted from previous position = 0.379 
    44532 rotated from previous position = 0.571 degrees 
    44533 atoms outside contour = 1418, contour level = 0.0064458 
    44534  
    44535 
    44536 > fitmap #4 inMap #34
    44537 
    44538 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44539 relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms 
    44540 average map value = 0.009047, steps = 48 
    44541 shifted from previous position = 0.169 
    44542 rotated from previous position = 0.374 degrees 
    44543 atoms outside contour = 3180, contour level = 0.0064458 
    44544  
    44545 Position of CopB_Q9JIF7.pdb (#4) relative to
    44546 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44547 Matrix rotation and translation 
    44548 -0.02148076 -0.72058910 0.69302952 220.35457835 
    44549 -0.03075639 0.69333767 0.71995619 241.26508197 
    44550 -0.99929606 -0.00584988 -0.03705614 272.66881653 
    44551 Axis -0.36910873 0.86063230 0.35081447 
    44552 Axis point 256.00416174 0.00000000 -58.84211617 
    44553 Rotation angle (degrees) 100.52121690 
    44554 Shift along axis 221.96189033 
    44555  
    44556 
    44557 > fitmap sel inMap #34 moveWholeMolecules false
    44558 
    44559 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44560 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44561 average map value = 0.008342, steps = 48 
    44562 shifted from previous position = 0.294 
    44563 rotated from previous position = 0.378 degrees 
    44564 atoms outside contour = 1420, contour level = 0.0064458 
    44565  
    44566 
    44567 > fitmap #4 inMap #34
    44568 
    44569 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44570 relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms 
    44571 average map value = 0.009066, steps = 44 
    44572 shifted from previous position = 0.136 
    44573 rotated from previous position = 0.344 degrees 
    44574 atoms outside contour = 3188, contour level = 0.0064458 
    44575  
    44576 Position of CopB_Q9JIF7.pdb (#4) relative to
    44577 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44578 Matrix rotation and translation 
    44579 -0.02175555 -0.72294654 0.69056136 220.33099503 
    44580 -0.02590185 0.69090057 0.72248564 241.19819905 
    44581 -0.99942773 -0.00216875 -0.03375658 272.74170203 
    44582 Axis -0.36850260 0.85939641 0.35446247 
    44583 Axis point 255.63636665 0.00000000 -59.69647871 
    44584 Rotation angle (degrees) 100.50409379 
    44585 Shift along axis 222.76901806 
    44586  
    44587 
    44588 > fitmap sel inMap #34 moveWholeMolecules false
    44589 
    44590 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44591 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44592 average map value = 0.008342, steps = 40 
    44593 shifted from previous position = 0.269 
    44594 rotated from previous position = 0.307 degrees 
    44595 atoms outside contour = 1416, contour level = 0.0064458 
    44596  
    44597 
    44598 > fitmap #4 inMap #34
    44599 
    44600 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44601 relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms 
    44602 average map value = 0.00908, steps = 60 
    44603 shifted from previous position = 0.144 
    44604 rotated from previous position = 0.294 degrees 
    44605 atoms outside contour = 3179, contour level = 0.0064458 
    44606  
    44607 Position of CopB_Q9JIF7.pdb (#4) relative to
    44608 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44609 Matrix rotation and translation 
    44610 -0.02187099 -0.72521931 0.68817048 220.26525308 
    44611 -0.02205057 0.68851761 0.72488432 241.14683477 
    44612 -0.99951760 0.00067939 -0.03105006 272.81387189 
    44613 Axis -0.36826682 0.85820946 0.35756967 
    44614 Axis point 255.36293942 0.00000000 -60.42643654 
    44615 Rotation angle (degrees) 100.49803006 
    44616 Shift along axis 223.38807679 
    44617  
    44618 
    44619 > fitmap sel inMap #34 moveWholeMolecules false
    44620 
    44621 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44622 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44623 average map value = 0.008342, steps = 48 
    44624 shifted from previous position = 0.213 
    44625 rotated from previous position = 0.325 degrees 
    44626 atoms outside contour = 1419, contour level = 0.0064458 
    44627  
    44628 
    44629 > fitmap sel inMap #34 moveWholeMolecules false
    44630 
    44631 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44632 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44633 average map value = 0.008342, steps = 48 
    44634 shifted from previous position = 0.00776 
    44635 rotated from previous position = 0.0241 degrees 
    44636 atoms outside contour = 1418, contour level = 0.0064458 
    44637  
    44638 
    44639 > fitmap sel inMap #34 moveWholeMolecules false
    44640 
    44641 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44642 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44643 average map value = 0.008342, steps = 36 
    44644 shifted from previous position = 0.0144 
    44645 rotated from previous position = 0.0481 degrees 
    44646 atoms outside contour = 1420, contour level = 0.0064458 
    44647  
    44648 
    44649 > fitmap sel inMap #34 moveWholeMolecules false
    44650 
    44651 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44652 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44653 average map value = 0.008342, steps = 40 
    44654 shifted from previous position = 0.031 
    44655 rotated from previous position = 0.0424 degrees 
    44656 atoms outside contour = 1418, contour level = 0.0064458 
    44657  
    44658 
    44659 > fitmap sel inMap #34 moveWholeMolecules false
    44660 
    44661 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44662 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44663 average map value = 0.008342, steps = 36 
    44664 shifted from previous position = 0.0136 
    44665 rotated from previous position = 0.0235 degrees 
    44666 atoms outside contour = 1416, contour level = 0.0064458 
    44667  
    44668 
    44669 > fitmap sel inMap #34 moveWholeMolecules false
    44670 
    44671 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44672 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44673 average map value = 0.008342, steps = 44 
    44674 shifted from previous position = 0.00504 
    44675 rotated from previous position = 0.0201 degrees 
    44676 atoms outside contour = 1418, contour level = 0.0064458 
    44677  
    44678 
    44679 > fitmap sel inMap #34 moveWholeMolecules false
    44680 
    44681 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44682 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44683 average map value = 0.008342, steps = 44 
    44684 shifted from previous position = 0.00145 
    44685 rotated from previous position = 0.0365 degrees 
    44686 atoms outside contour = 1419, contour level = 0.0064458 
    44687  
    44688 
    44689 > fitmap #4 inMap #34
    44690 
    44691 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44692 relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms 
    44693 average map value = 0.009093, steps = 48 
    44694 shifted from previous position = 0.0942 
    44695 rotated from previous position = 0.3 degrees 
    44696 atoms outside contour = 3174, contour level = 0.0064458 
    44697  
    44698 Position of CopB_Q9JIF7.pdb (#4) relative to
    44699 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44700 Matrix rotation and translation 
    44701 -0.02202831 -0.72743960 0.68581804 220.24647955 
    44702 -0.01800794 0.68616191 0.72722593 241.13299244 
    44703 -0.99959515 0.00366939 -0.02821467 272.86847264 
    44704 Axis -0.36792593 0.85702663 0.36074348 
    44705 Axis point 255.08370612 0.00000000 -61.21252613 
    44706 Rotation angle (degrees) 100.48863782 
    44707 Shift along axis 224.05852775 
    44708  
    44709 
    44710 > hide #!34 models
    44711 
    44712 > select clear
    44713 
    44714 Drag select of 84 residues 
    44715 
    44716 > select up
    44717 
    44718 797 atoms, 808 bonds, 106 residues, 1 model selected 
    44719 
    44720 > select up
    44721 
    44722 3240 atoms, 3289 bonds, 418 residues, 1 model selected 
    44723 
    44724 > select down
    44725 
    44726 797 atoms, 808 bonds, 106 residues, 1 model selected 
    44727 
    44728 > show #!34 models
    44729 
    44730 > fitmap sel inMap #34 moveWholeMolecules false
    44731 
    44732 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44733 relion_locres_filtered_20240326_GT.mrc (#34) using 797 atoms 
    44734 average map value = 0.009017, steps = 52 
    44735 shifted from previous position = 1.7 
    44736 rotated from previous position = 6.56 degrees 
    44737 atoms outside contour = 268, contour level = 0.0064458 
    44738  
    44739 
    44740 > undo
    44741 
    44742 Drag select of 188 residues 
    44743 
    44744 > select up
    44745 
    44746 1720 atoms, 1745 bonds, 223 residues, 1 model selected 
    44747 Drag select of 151 residues 
    44748 
    44749 > select up
    44750 
    44751 1513 atoms, 1531 bonds, 200 residues, 1 model selected 
    44752 
    44753 > select up
    44754 
    44755 3240 atoms, 3289 bonds, 418 residues, 1 model selected 
    44756 
    44757 > select down
    44758 
    44759 1513 atoms, 1531 bonds, 200 residues, 1 model selected 
    44760 
    44761 > select clear
    44762 
    44763 [Repeated 1 time(s)]Drag select of 43 residues 
    44764 Drag select of 158 residues 
    44765 
    44766 > select up
    44767 
    44768 1538 atoms, 1557 bonds, 203 residues, 1 model selected 
    44769 
    44770 > select up
    44771 
    44772 3240 atoms, 3289 bonds, 418 residues, 1 model selected 
    44773 
    44774 > show #!34 models
    44775 
    44776 > fitmap sel inMap #34 moveWholeMolecules false
    44777 
    44778 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44779 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44780 average map value = 0.008403, steps = 48 
    44781 shifted from previous position = 0.256 
    44782 rotated from previous position = 0.202 degrees 
    44783 atoms outside contour = 1414, contour level = 0.0064458 
    44784  
    44785 
    44786 > fitmap sel inMap #34 moveWholeMolecules false
    44787 
    44788 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44789 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44790 average map value = 0.008402, steps = 44 
    44791 shifted from previous position = 0.0114 
    44792 rotated from previous position = 0.0342 degrees 
    44793 atoms outside contour = 1413, contour level = 0.0064458 
    44794  
    44795 
    44796 > fitmap sel inMap #34 moveWholeMolecules false
    44797 
    44798 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44799 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44800 average map value = 0.008403, steps = 44 
    44801 shifted from previous position = 0.0109 
    44802 rotated from previous position = 0.0247 degrees 
    44803 atoms outside contour = 1413, contour level = 0.0064458 
    44804  
    44805 
    44806 > fitmap sel inMap #34 moveWholeMolecules false
    44807 
    44808 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44809 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44810 average map value = 0.008403, steps = 44 
    44811 shifted from previous position = 0.00781 
    44812 rotated from previous position = 0.0287 degrees 
    44813 atoms outside contour = 1413, contour level = 0.0064458 
    44814  
    44815 
    44816 > fitmap sel inMap #34 moveWholeMolecules false
    44817 
    44818 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44819 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44820 average map value = 0.008403, steps = 36 
    44821 shifted from previous position = 0.012 
    44822 rotated from previous position = 0.0293 degrees 
    44823 atoms outside contour = 1414, contour level = 0.0064458 
    44824  
    44825 
    44826 > fitmap sel inMap #34 moveWholeMolecules false
    44827 
    44828 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44829 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44830 average map value = 0.008403, steps = 44 
    44831 shifted from previous position = 0.0216 
    44832 rotated from previous position = 0.0315 degrees 
    44833 atoms outside contour = 1413, contour level = 0.0064458 
    44834  
    44835 
    44836 > fitmap sel inMap #34 moveWholeMolecules false
    44837 
    44838 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44839 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44840 average map value = 0.008403, steps = 40 
    44841 shifted from previous position = 0.0304 
    44842 rotated from previous position = 0.00825 degrees 
    44843 atoms outside contour = 1412, contour level = 0.0064458 
    44844  
    44845 
    44846 > fitmap sel inMap #34 moveWholeMolecules false
    44847 
    44848 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44849 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44850 average map value = 0.008403, steps = 36 
    44851 shifted from previous position = 0.00821 
    44852 rotated from previous position = 0.0239 degrees 
    44853 atoms outside contour = 1415, contour level = 0.0064458 
    44854  
    44855 
    44856 > fitmap sel inMap #34 moveWholeMolecules false
    44857 
    44858 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44859 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44860 average map value = 0.008403, steps = 44 
    44861 shifted from previous position = 0.0135 
    44862 rotated from previous position = 0.011 degrees 
    44863 atoms outside contour = 1411, contour level = 0.0064458 
    44864  
    44865 
    44866 > fitmap sel inMap #34 moveWholeMolecules false
    44867 
    44868 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44869 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44870 average map value = 0.008402, steps = 48 
    44871 shifted from previous position = 0.00431 
    44872 rotated from previous position = 0.0168 degrees 
    44873 atoms outside contour = 1412, contour level = 0.0064458 
    44874  
    44875 
    44876 > fitmap #4 inMap #34
    44877 
    44878 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44879 relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms 
    44880 average map value = 0.009128, steps = 60 
    44881 shifted from previous position = 0.105 
    44882 rotated from previous position = 0.212 degrees 
    44883 atoms outside contour = 3174, contour level = 0.0064458 
    44884  
    44885 Position of CopB_Q9JIF7.pdb (#4) relative to
    44886 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44887 Matrix rotation and translation 
    44888 -0.02205954 -0.72904320 0.68411211 220.19108610 
    44889 -0.01519801 0.68444410 0.72890692 241.09722099 
    44890 -0.99964113 0.00568221 -0.02617852 272.91548671 
    44891 Axis -0.36774727 0.85615942 0.36297794 
    44892 Axis point 254.88464436 0.00000000 -61.75159142 
    44893 Rotation angle (degrees) 100.48027313 
    44894 Shift along axis 224.50529001 
    44895  
    44896 
    44897 > fitmap #4 inMap #34
    44898 
    44899 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44900 relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms 
    44901 average map value = 0.009128, steps = 48 
    44902 shifted from previous position = 0.0147 
    44903 rotated from previous position = 0.00889 degrees 
    44904 atoms outside contour = 3170, contour level = 0.0064458 
    44905  
    44906 Position of CopB_Q9JIF7.pdb (#4) relative to
    44907 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    44908 Matrix rotation and translation 
    44909 -0.02200949 -0.72909117 0.68406260 220.18947119 
    44910 -0.01532928 0.68439402 0.72895119 241.11096923 
    44911 -0.99964023 0.00555765 -0.02623960 272.92257115 
    44912 Axis -0.36783523 0.85613871 0.36293767 
    44913 Axis point 254.91117447 0.00000000 -61.75060152 
    44914 Rotation angle (degrees) 100.48205346 
    44915 Shift along axis 224.48487369 
    44916  
    44917 
    44918 > fitmap sel inMap #34 moveWholeMolecules false
    44919 
    44920 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    44921 relion_locres_filtered_20240326_GT.mrc (#34) using 3240 atoms 
    44922 average map value = 0.008403, steps = 44 
    44923 shifted from previous position = 0.14 
    44924 rotated from previous position = 0.2 degrees 
    44925 atoms outside contour = 1413, contour level = 0.0064458 
    44926  
    44927 
    44928 > select add #4
    44929 
    44930 7211 atoms, 7324 bonds, 1 pseudobond, 914 residues, 2 models selected 
    44931 
    44932 > select subtract #4
    44933 
    44934 Nothing selected 
    44935 
    44936 > show #!3 models
    44937 
    44938 > hide #!4 models
    44939 
    44940 > hide #!3 models
    44941 
    44942 > color #35 #ff2f92ff
    44943 
    44944 > color #36 #ff2f92ff
    44945 
    44946 > color #37 #ff2f92ff
    44947 
    44948 > color #26.1 #ff2f92ff
    44949 
    44950 > color #6 #ff2f92ff
    44951 
    44952 > color #5 #ff2f92ff
    44953 
    44954 > show #5 models
    44955 
    44956 > ui tool show Matchmaker
    44957 
    44958 > show #!26.1 models
    44959 
    44960 > hide #!26.1 models
    44961 
    44962 > show #!26.1 models
    44963 
    44964 > hide #!26.1 models
    44965 
    44966 > show #!35 models
    44967 
    44968 > matchmaker #5 to #35
    44969 
    44970 Parameters 
    44971 --- 
    44972 Chain pairing | bb 
    44973 Alignment algorithm | Needleman-Wunsch 
    44974 Similarity matrix | BLOSUM-62 
    44975 SS fraction | 0.3 
    44976 Gap open (HH/SS/other) | 18/18/6 
    44977 Gap extend | 1 
    44978 SS matrix |  |  | H | S | O 
    44979 ---|---|---|--- 
    44980 H | 6 | -9 | -6 
    44981 S |  | 6 | -6 
    44982 O |  |  | 4 
    44983 Iteration cutoff | 2 
    44984  
    44985 Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#35)
    44986 with hArf1_P84078, chain A (#5), sequence alignment score = 714.3 
    44987 RMSD between 159 pruned atom pairs is 0.735 angstroms; (across all 159 pairs:
    44988 0.735) 
    44989  
    44990 
    44991 > hide #!34 models
    44992 
    44993 > hide #5 models
    44994 
    44995 > show #5 models
    44996 
    44997 > hide #5 models
    44998 
    44999 > show #5 models
    45000 
    45001 > hide #5 models
    45002 
    45003 > show #5 models
    45004 
    45005 > hide #5 models
    45006 
    45007 > show #5 models
    45008 
    45009 > show #6 models
    45010 
    45011 > hide #5 models
    45012 
    45013 > hide #!35 models
    45014 
    45015 > show #!36 models
    45016 
    45017 > hide #!36 models
    45018 
    45019 > show #!37 models
    45020 
    45021 > matchmaker #6 to #37
    45022 
    45023 Parameters 
    45024 --- 
    45025 Chain pairing | bb 
    45026 Alignment algorithm | Needleman-Wunsch 
    45027 Similarity matrix | BLOSUM-62 
    45028 SS fraction | 0.3 
    45029 Gap open (HH/SS/other) | 18/18/6 
    45030 Gap extend | 1 
    45031 SS matrix |  |  | H | S | O 
    45032 ---|---|---|--- 
    45033 H | 6 | -9 | -6 
    45034 S |  | 6 | -6 
    45035 O |  |  | 4 
    45036 Iteration cutoff | 2 
    45037  
    45038 Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#37)
    45039 with hArf1_P84078, chain A (#6), sequence alignment score = 714.3 
    45040 RMSD between 159 pruned atom pairs is 0.735 angstroms; (across all 159 pairs:
    45041 0.735) 
    45042  
    45043 
    45044 > matchmaker #6 to #37
    45045 
    45046 Parameters 
    45047 --- 
    45048 Chain pairing | bb 
    45049 Alignment algorithm | Needleman-Wunsch 
    45050 Similarity matrix | BLOSUM-62 
    45051 SS fraction | 0.3 
    45052 Gap open (HH/SS/other) | 18/18/6 
    45053 Gap extend | 1 
    45054 SS matrix |  |  | H | S | O 
    45055 ---|---|---|--- 
    45056 H | 6 | -9 | -6 
    45057 S |  | 6 | -6 
    45058 O |  |  | 4 
    45059 Iteration cutoff | 2 
    45060  
    45061 Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#37)
    45062 with hArf1_P84078, chain A (#6), sequence alignment score = 714.3 
    45063 RMSD between 159 pruned atom pairs is 0.735 angstroms; (across all 159 pairs:
    45064 0.735) 
    45065  
    45066 
    45067 > hide #!37 models
    45068 
    45069 > hide #6 models
    45070 
    45071 > show #!34 models
    45072 
    45073 > show #7 models
    45074 
    45075 > show #!3 models
    45076 
    45077 > fitmap #7 inMap #34
    45078 
    45079 Fit molecule CopBprime_O55029.pdb (#7) to map
    45080 relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms 
    45081 average map value = 0.009016, steps = 44 
    45082 shifted from previous position = 0.0015 
    45083 rotated from previous position = 0.00327 degrees 
    45084 atoms outside contour = 2762, contour level = 0.0064458 
    45085  
    45086 Position of CopBprime_O55029.pdb (#7) relative to
    45087 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45088 Matrix rotation and translation 
    45089 -0.13040565 -0.23223349 -0.96387861 237.21405953 
    45090 0.00513980 -0.97232561 0.23357331 213.62080010 
    45091 -0.99144740 0.02550513 0.12799038 275.47756577 
    45092 Axis -0.65666229 0.08700700 0.74914913 
    45093 Axis point 228.29565523 105.85174821 0.00000000 
    45094 Rotation angle (degrees) 170.88430171 
    45095 Shift along axis 69.19075642 
    45096  
    45097 
    45098 > hide #7 models
    45099 
    45100 > fitmap #3 inMap #34
    45101 
    45102 Fit molecule CopA_F8WHL2.pdb (#3) to map
    45103 relion_locres_filtered_20240326_GT.mrc (#34) using 6692 atoms 
    45104 average map value = 0.008601, steps = 64 
    45105 shifted from previous position = 0.0381 
    45106 rotated from previous position = 0.0442 degrees 
    45107 atoms outside contour = 2941, contour level = 0.0064458 
    45108  
    45109 Position of CopA_F8WHL2.pdb (#3) relative to
    45110 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45111 Matrix rotation and translation 
    45112 0.90671494 0.39954081 0.13503758 210.03056431 
    45113 -0.22975457 0.73645358 -0.63627741 283.01088612 
    45114 -0.35366770 0.54589674 0.75954979 275.94131079 
    45115 Axis 0.82923738 0.34280286 -0.44141994 
    45116 Axis point 0.00000000 -393.93203557 527.48012669 
    45117 Rotation angle (degrees) 45.46384793 
    45118 Shift along axis 149.37613895 
    45119  
    45120 
    45121 > show #!4 models
    45122 
    45123 > fitmap #4 inMap #34
    45124 
    45125 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    45126 relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms 
    45127 average map value = 0.009133, steps = 48 
    45128 shifted from previous position = 0.0607 
    45129 rotated from previous position = 0.175 degrees 
    45130 atoms outside contour = 3169, contour level = 0.0064458 
    45131  
    45132 Position of CopB_Q9JIF7.pdb (#4) relative to
    45133 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45134 Matrix rotation and translation 
    45135 -0.02227576 -0.73059739 0.68244505 220.16670275 
    45136 -0.01329774 0.68277057 0.73051182 241.11428481 
    45137 -0.99966342 0.00719773 -0.02492453 272.95439119 
    45138 Axis -0.36781473 0.85537428 0.36475630 
    45139 Axis point 254.75617977 0.00000000 -62.17248178 
    45140 Rotation angle (degrees) 100.49879570 
    45141 Shift along axis 224.82423663 
    45142  
    45143 
    45144 > show #5 models
    45145 
    45146 > fitmap #5 inMap #34
    45147 
    45148 Fit molecule hArf1_P84078 (#5) to map relion_locres_filtered_20240326_GT.mrc
    45149 (#34) using 1457 atoms 
    45150 average map value = 0.007776, steps = 60 
    45151 shifted from previous position = 0.26 
    45152 rotated from previous position = 2.79 degrees 
    45153 atoms outside contour = 719, contour level = 0.0064458 
    45154  
    45155 Position of hArf1_P84078 (#5) relative to
    45156 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45157 Matrix rotation and translation 
    45158 0.04234882 -0.02818621 0.99870521 172.65196320 
    45159 -0.66605054 -0.74587192 0.00719247 238.26541094 
    45160 0.74470346 -0.66549275 -0.05036024 212.55715318 
    45161 Axis -0.69984360 0.26425660 -0.66361690 
    45162 Axis point 0.00000000 166.46411478 -28.78247041 
    45163 Rotation angle (degrees) 151.27561153 
    45164 Shift along axis -198.92268355 
    45165  
    45166 
    45167 > fitmap #5 inMap #34
    45168 
    45169 Fit molecule hArf1_P84078 (#5) to map relion_locres_filtered_20240326_GT.mrc
    45170 (#34) using 1457 atoms 
    45171 average map value = 0.007776, steps = 28 
    45172 shifted from previous position = 0.0319 
    45173 rotated from previous position = 0.0581 degrees 
    45174 atoms outside contour = 720, contour level = 0.0064458 
    45175  
    45176 Position of hArf1_P84078 (#5) relative to
    45177 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45178 Matrix rotation and translation 
    45179 0.04231572 -0.02779859 0.99871748 172.67209877 
    45180 -0.66534100 -0.74650277 0.00741217 238.24370144 
    45181 0.74533933 -0.66480135 -0.05008434 212.54957544 
    45182 Axis -0.69986868 0.26380224 -0.66377120 
    45183 Axis point 0.00000000 166.36050683 -28.75252991 
    45184 Rotation angle (degrees) 151.29875184 
    45185 Shift along axis -199.08285740 
    45186  
    45187 
    45188 > fitmap #5 inMap #34
    45189 
    45190 Fit molecule hArf1_P84078 (#5) to map relion_locres_filtered_20240326_GT.mrc
    45191 (#34) using 1457 atoms 
    45192 average map value = 0.007776, steps = 60 
    45193 shifted from previous position = 0.26 
    45194 rotated from previous position = 2.79 degrees 
    45195 atoms outside contour = 719, contour level = 0.0064458 
    45196  
    45197 Position of hArf1_P84078 (#5) relative to
    45198 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45199 Matrix rotation and translation 
    45200 0.04234882 -0.02818621 0.99870521 172.65196320 
    45201 -0.66605054 -0.74587192 0.00719247 238.26541094 
    45202 0.74470346 -0.66549275 -0.05036024 212.55715318 
    45203 Axis -0.69984360 0.26425660 -0.66361690 
    45204 Axis point 0.00000000 166.46411478 -28.78247041 
    45205 Rotation angle (degrees) 151.27561153 
    45206 Shift along axis -198.92268355 
    45207  
    45208 
    45209 > fitmap #5 inMap #34
    45210 
    45211 Fit molecule hArf1_P84078 (#5) to map relion_locres_filtered_20240326_GT.mrc
    45212 (#34) using 1457 atoms 
    45213 average map value = 0.007776, steps = 28 
    45214 shifted from previous position = 0.0319 
    45215 rotated from previous position = 0.0581 degrees 
    45216 atoms outside contour = 720, contour level = 0.0064458 
    45217  
    45218 Position of hArf1_P84078 (#5) relative to
    45219 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45220 Matrix rotation and translation 
    45221 0.04231572 -0.02779859 0.99871748 172.67209877 
    45222 -0.66534100 -0.74650277 0.00741217 238.24370144 
    45223 0.74533933 -0.66480135 -0.05008434 212.54957544 
    45224 Axis -0.69986868 0.26380224 -0.66377120 
    45225 Axis point 0.00000000 166.36050683 -28.75252991 
    45226 Rotation angle (degrees) 151.29875184 
    45227 Shift along axis -199.08285740 
    45228  
    45229 
    45230 > show #6 models
    45231 
    45232 > fitmap #6 inMap #34
    45233 
    45234 Fit molecule hArf1_P84078 (#6) to map relion_locres_filtered_20240326_GT.mrc
    45235 (#34) using 1457 atoms 
    45236 average map value = 0.01, steps = 100 
    45237 shifted from previous position = 0.303 
    45238 rotated from previous position = 1.54 degrees 
    45239 atoms outside contour = 540, contour level = 0.0064458 
    45240  
    45241 Position of hArf1_P84078 (#6) relative to
    45242 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45243 Matrix rotation and translation 
    45244 -0.84109618 -0.49489980 0.21824615 292.94251604 
    45245 -0.49080235 0.52875420 -0.69248251 231.43485077 
    45246 0.22731089 -0.68956013 -0.68763113 256.77208513 
    45247 Axis 0.28186120 -0.87428563 0.39519476 
    45248 Axis point 183.38607825 0.00000000 181.13455437 
    45249 Rotation angle (degrees) 179.70297261 
    45250 Shift along axis -18.29605358 
    45251  
    45252 
    45253 > fitmap #6 inMap #34
    45254 
    45255 Fit molecule hArf1_P84078 (#6) to map relion_locres_filtered_20240326_GT.mrc
    45256 (#34) using 1457 atoms 
    45257 average map value = 0.01, steps = 80 
    45258 shifted from previous position = 0.0386 
    45259 rotated from previous position = 0.0913 degrees 
    45260 atoms outside contour = 538, contour level = 0.0064458 
    45261  
    45262 Position of hArf1_P84078 (#6) relative to
    45263 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45264 Matrix rotation and translation 
    45265 -0.84141080 -0.49438517 0.21819978 292.95934934 
    45266 -0.49075063 0.52999741 -0.69156817 231.45975086 
    45267 0.22625573 -0.68897462 -0.68856539 256.78575999 
    45268 Axis 0.28158432 -0.87464124 0.39460484 
    45269 Axis point 183.39036692 0.00000000 180.99833258 
    45270 Rotation angle (degrees) 179.73613569 
    45271 Shift along axis -18.62257981 
    45272  
    45273 
    45274 > show #7 models
    45275 
    45276 > fitmap #7 inMap #34
    45277 
    45278 Fit molecule CopBprime_O55029.pdb (#7) to map
    45279 relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms 
    45280 average map value = 0.009016, steps = 44 
    45281 shifted from previous position = 0.00265 
    45282 rotated from previous position = 0.00798 degrees 
    45283 atoms outside contour = 2763, contour level = 0.0064458 
    45284  
    45285 Position of CopBprime_O55029.pdb (#7) relative to
    45286 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45287 Matrix rotation and translation 
    45288 -0.13031496 -0.23233256 -0.96386700 237.21589951 
    45289 0.00511772 -0.97230159 0.23367373 213.62118254 
    45290 -0.99145944 0.02551838 0.12789446 275.47979758 
    45291 Axis -0.65669499 0.08704949 0.74911553 
    45292 Axis point 228.30445679 105.84953601 0.00000000 
    45293 Rotation angle (degrees) 170.88090756 
    45294 Shift along axis 69.18331757 
    45295  
    45296 
    45297 > fitmap #7 inMap #34
    45298 
    45299 Fit molecule CopBprime_O55029.pdb (#7) to map
    45300 relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms 
    45301 average map value = 0.009016, steps = 44 
    45302 shifted from previous position = 0.00284 
    45303 rotated from previous position = 0.0074 degrees 
    45304 atoms outside contour = 2763, contour level = 0.0064458 
    45305  
    45306 Position of CopBprime_O55029.pdb (#7) relative to
    45307 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45308 Matrix rotation and translation 
    45309 -0.13036407 -0.23226920 -0.96387562 237.21339088 
    45310 0.00520941 -0.97231900 0.23359927 213.62056134 
    45311 -0.99145250 0.02543173 0.12796545 275.47872550 
    45312 Axis -0.65667569 0.08699275 0.74913904 
    45313 Axis point 228.29457997 105.86087578 0.00000000 
    45314 Rotation angle (degrees) 170.88009904 
    45315 Shift along axis 69.18304210 
    45316  
    45317 
    45318 > show #8 models
    45319 
    45320 > fitmap #8 inMap #34
    45321 
    45322 Fit molecule CopD_Q5XJY5 (#8) to map relion_locres_filtered_20240326_GT.mrc
    45323 (#34) using 1462 atoms 
    45324 average map value = 0.00841, steps = 44 
    45325 shifted from previous position = 0.0258 
    45326 rotated from previous position = 0.05 degrees 
    45327 atoms outside contour = 660, contour level = 0.0064458 
    45328  
    45329 Position of CopD_Q5XJY5 (#8) relative to
    45330 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45331 Matrix rotation and translation 
    45332 0.07187504 0.98845136 0.13340879 -99.02438741 
    45333 -0.91249811 0.01116004 0.40892868 162.65716677 
    45334 0.40271726 -0.15112703 0.90276211 446.03007255 
    45335 Axis -0.28003492 -0.13465763 -0.95049869 
    45336 Axis point -59.66632563 162.61379915 0.00000000 
    45337 Rotation angle (degrees) 90.40688381 
    45338 Shift along axis -418.12374426 
    45339  
    45340 
    45341 > fitmap #8 inMap #34
    45342 
    45343 Fit molecule CopD_Q5XJY5 (#8) to map relion_locres_filtered_20240326_GT.mrc
    45344 (#34) using 1462 atoms 
    45345 average map value = 0.00841, steps = 28 
    45346 shifted from previous position = 0.0355 
    45347 rotated from previous position = 0.0218 degrees 
    45348 atoms outside contour = 658, contour level = 0.0064458 
    45349  
    45350 Position of CopD_Q5XJY5 (#8) relative to
    45351 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45352 Matrix rotation and translation 
    45353 0.07190905 0.98846257 0.13330736 -99.02728885 
    45354 -0.91234566 0.01117639 0.40926824 162.68327434 
    45355 0.40305644 -0.15105248 0.90262321 446.01125269 
    45356 Axis -0.28016751 -0.13487798 -0.95042838 
    45357 Axis point -59.73213470 162.60448549 0.00000000 
    45358 Rotation angle (degrees) 90.40942063 
    45359 Shift along axis -418.09991335 
    45360  
    45361 
    45362 > hide #8 models
    45363 
    45364 > show #8 models
    45365 
    45366 > hide #8 models
    45367 
    45368 > show #8 models
    45369 
    45370 > show #!9 models
    45371 
    45372 > fitmap #9 inMap #34
    45373 
    45374 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc
    45375 (#34) using 6673 atoms 
    45376 average map value = 0.008518, steps = 64 
    45377 shifted from previous position = 0.00285 
    45378 rotated from previous position = 0.0196 degrees 
    45379 atoms outside contour = 3982, contour level = 0.0064458 
    45380  
    45381 Position of CopG_Q9QZE5 (#9) relative to
    45382 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45383 Matrix rotation and translation 
    45384 0.49555644 -0.51974611 -0.69590788 274.32281607 
    45385 0.53779322 -0.44554954 0.71572624 319.08590355 
    45386 -0.68205737 -0.72893730 0.05872099 294.81320826 
    45387 Axis -0.80688147 -0.00773586 0.59066272 
    45388 Axis point 0.00000000 282.61737441 125.51701713 
    45389 Rotation angle (degrees) 116.46404027 
    45390 Shift along axis -49.67923130 
    45391  
    45392 
    45393 > fitmap #9 inMap #34
    45394 
    45395 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc
    45396 (#34) using 6673 atoms 
    45397 average map value = 0.008518, steps = 72 
    45398 shifted from previous position = 0.00472 
    45399 rotated from previous position = 0.00969 degrees 
    45400 atoms outside contour = 3982, contour level = 0.0064458 
    45401  
    45402 Position of CopG_Q9QZE5 (#9) relative to
    45403 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45404 Matrix rotation and translation 
    45405 0.49566394 -0.51961782 -0.69592714 274.31645257 
    45406 0.53778966 -0.44556712 0.71571797 319.08334850 
    45407 -0.68198206 -0.72901801 0.05859354 294.81271148 
    45408 Axis -0.80693035 -0.00778876 0.59059524 
    45409 Axis point -0.00000000 282.60556031 125.50928482 
    45410 Rotation angle (degrees) 116.46524179 
    45411 Shift along axis -49.72455120 
    45412  
    45413 
    45414 > hide #!3 models
    45415 
    45416 > hide #!4 models
    45417 
    45418 > hide #5 models
    45419 
    45420 > hide #6 models
    45421 
    45422 > hide #7 models
    45423 
    45424 > hide #8 models
    45425 
    45426 > hide #!26 models
    45427 
    45428 > show #!26 models
    45429 
    45430 > hide #!34 models
    45431 
    45432 > show #!34 models
    45433 
    45434 > hide #!34 models
    45435 
    45436 > ui mousemode right select
    45437 
    45438 Drag select of 269 residues 
    45439 
    45440 > delete sel
    45441 
    45442 > show #!34 models
    45443 
    45444 > hide #!34 models
    45445 
    45446 > show #!34 models
    45447 
    45448 > fitmap #9 inMap #34
    45449 
    45450 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc
    45451 (#34) using 4566 atoms 
    45452 average map value = 0.01074, steps = 72 
    45453 shifted from previous position = 0.088 
    45454 rotated from previous position = 0.409 degrees 
    45455 atoms outside contour = 1879, contour level = 0.0064458 
    45456  
    45457 Position of CopG_Q9QZE5 (#9) relative to
    45458 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45459 Matrix rotation and translation 
    45460 0.49877213 -0.51940452 -0.69386259 274.34520892 
    45461 0.54040314 -0.43953081 0.71747969 318.91808372 
    45462 -0.67763619 -0.73282440 0.06146211 295.11334535 
    45463 Axis -0.80736612 -0.00903304 0.58998165 
    45464 Axis point 0.00000000 283.40502950 124.75091335 
    45465 Rotation angle (degrees) 116.08144233 
    45466 Shift along axis -50.26636765 
    45467  
    45468 
    45469 > fitmap #9 inMap #34
    45470 
    45471 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc
    45472 (#34) using 4566 atoms 
    45473 average map value = 0.01074, steps = 80 
    45474 shifted from previous position = 0.0217 
    45475 rotated from previous position = 0.0237 degrees 
    45476 atoms outside contour = 1876, contour level = 0.0064458 
    45477  
    45478 Position of CopG_Q9QZE5 (#9) relative to
    45479 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45480 Matrix rotation and translation 
    45481 0.49908084 -0.51918554 -0.69380450 274.36159020 
    45482 0.54045197 -0.43935907 0.71754810 318.91686111 
    45483 -0.67736990 -0.73308252 0.06131916 295.12113417 
    45484 Axis -0.80747365 -0.00914810 0.58983270 
    45485 Axis point 0.00000000 283.42170468 124.71591629 
    45486 Rotation angle (degrees) 116.07067825 
    45487 Shift along axis -50.38514135 
    45488  
    45489 
    45490 > fitmap #9 inMap #34
    45491 
    45492 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc
    45493 (#34) using 4566 atoms 
    45494 average map value = 0.01074, steps = 64 
    45495 shifted from previous position = 0.00684 
    45496 rotated from previous position = 0.00808 degrees 
    45497 atoms outside contour = 1875, contour level = 0.0064458 
    45498  
    45499 Position of CopG_Q9QZE5 (#9) relative to
    45500 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45501 Matrix rotation and translation 
    45502 0.49918805 -0.51909470 -0.69379534 274.36109060 
    45503 0.54044465 -0.43934093 0.71756472 318.91338605 
    45504 -0.67729673 -0.73315772 0.06122821 295.12739301 
    45505 Axis -0.80751720 -0.00918364 0.58977253 
    45506 Axis point 0.00000000 283.41958236 124.70941560 
    45507 Rotation angle (degrees) 116.06958092 
    45508 Shift along axis -50.42205343 
    45509  
    45510 
    45511 > fitmap #9 inMap #34
    45512 
    45513 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc
    45514 (#34) using 4566 atoms 
    45515 average map value = 0.01074, steps = 48 
    45516 shifted from previous position = 0.0412 
    45517 rotated from previous position = 0.051 degrees 
    45518 atoms outside contour = 1881, contour level = 0.0064458 
    45519  
    45520 Position of CopG_Q9QZE5 (#9) relative to
    45521 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45522 Matrix rotation and translation 
    45523 0.49863214 -0.51967868 -0.69375792 274.34854819 
    45524 0.54019886 -0.43962462 0.71757604 318.94247182 
    45525 -0.67790204 -0.73257372 0.06151887 295.09515181 
    45526 Axis -0.80731916 -0.00882719 0.59004903 
    45527 Axis point -0.00000000 283.42057484 124.75295238 
    45528 Rotation angle (degrees) 116.08708973 
    45529 Shift along axis -50.18160021 
    45530  
    45531 
    45532 > fitmap #9 inMap #34
    45533 
    45534 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc
    45535 (#34) using 4566 atoms 
    45536 average map value = 0.01074, steps = 96 
    45537 shifted from previous position = 0.0339 
    45538 rotated from previous position = 0.0287 degrees 
    45539 atoms outside contour = 1876, contour level = 0.0064458 
    45540  
    45541 Position of CopG_Q9QZE5 (#9) relative to
    45542 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45543 Matrix rotation and translation 
    45544 0.49883627 -0.51937283 -0.69384020 274.36535094 
    45545 0.54046357 -0.43942649 0.71749808 318.92212104 
    45546 -0.67754077 -0.73290942 0.06150022 295.12061589 
    45547 Axis -0.80737825 -0.00907318 0.58996444 
    45548 Axis point 0.00000000 283.42436703 124.74290900 
    45549 Rotation angle (degrees) 116.07485371 
    45550 Shift along axis -50.29958216 
    45551  
    45552 
    45553 > show #!3 models
    45554 
    45555 > show #!4 models
    45556 
    45557 > show #5 models
    45558 
    45559 > show #6 models
    45560 
    45561 > show #7 models
    45562 
    45563 > show #8 models
    45564 
    45565 > show #10 models
    45566 
    45567 > fitmap #10 inMap #34
    45568 
    45569 Fit molecule CopZ1_P61924.pdb (#10) to map
    45570 relion_locres_filtered_20240326_GT.mrc (#34) using 1420 atoms 
    45571 average map value = 0.009234, steps = 36 
    45572 shifted from previous position = 0.0309 
    45573 rotated from previous position = 0.0395 degrees 
    45574 atoms outside contour = 626, contour level = 0.0064458 
    45575  
    45576 Position of CopZ1_P61924.pdb (#10) relative to
    45577 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45578 Matrix rotation and translation 
    45579 0.16405062 -0.94536304 -0.28173769 280.95095994 
    45580 -0.37368258 0.20476526 -0.90467261 278.13157944 
    45581 0.91293413 0.25369256 -0.31967383 253.90027754 
    45582 Axis 0.65834598 -0.67898053 0.32490923 
    45583 Axis point 175.04449780 0.00000000 294.13537343 
    45584 Rotation angle (degrees) 118.38728427 
    45585 Shift along axis 78.61155290 
    45586  
    45587 
    45588 > show #26.3 models
    45589 
    45590 > matchmaker #10 to #26.3
    45591 
    45592 Parameters 
    45593 --- 
    45594 Chain pairing | bb 
    45595 Alignment algorithm | Needleman-Wunsch 
    45596 Similarity matrix | BLOSUM-62 
    45597 SS fraction | 0.3 
    45598 Gap open (HH/SS/other) | 18/18/6 
    45599 Gap extend | 1 
    45600 SS matrix |  |  | H | S | O 
    45601 ---|---|---|--- 
    45602 H | 6 | -9 | -6 
    45603 S |  | 6 | -6 
    45604 O |  |  | 4 
    45605 Iteration cutoff | 2 
    45606  
    45607 Matchmaker 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C, chain C (#26.3) with
    45608 CopZ1_P61924.pdb, chain A (#10), sequence alignment score = 682.7 
    45609 RMSD between 136 pruned atom pairs is 0.539 angstroms; (across all 140 pairs:
    45610 0.678) 
    45611  
    45612 
    45613 > matchmaker #10 to #26.3
    45614 
    45615 Parameters 
    45616 --- 
    45617 Chain pairing | bb 
    45618 Alignment algorithm | Needleman-Wunsch 
    45619 Similarity matrix | BLOSUM-62 
    45620 SS fraction | 0.3 
    45621 Gap open (HH/SS/other) | 18/18/6 
    45622 Gap extend | 1 
    45623 SS matrix |  |  | H | S | O 
    45624 ---|---|---|--- 
    45625 H | 6 | -9 | -6 
    45626 S |  | 6 | -6 
    45627 O |  |  | 4 
    45628 Iteration cutoff | 2 
    45629  
    45630 Matchmaker 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C, chain C (#26.3) with
    45631 CopZ1_P61924.pdb, chain A (#10), sequence alignment score = 682.7 
    45632 RMSD between 136 pruned atom pairs is 0.539 angstroms; (across all 140 pairs:
    45633 0.678) 
    45634  
    45635 
    45636 > show #11 models
    45637 
    45638 > show #24 models
    45639 
    45640 > matchmaker #11 to #24
    45641 
    45642 Parameters 
    45643 --- 
    45644 Chain pairing | bb 
    45645 Alignment algorithm | Needleman-Wunsch 
    45646 Similarity matrix | BLOSUM-62 
    45647 SS fraction | 0.3 
    45648 Gap open (HH/SS/other) | 18/18/6 
    45649 Gap extend | 1 
    45650 SS matrix |  |  | H | S | O 
    45651 ---|---|---|--- 
    45652 H | 6 | -9 | -6 
    45653 S |  | 6 | -6 
    45654 O |  |  | 4 
    45655 Iteration cutoff | 2 
    45656  
    45657 Matchmaker 3kn1_Golph3_xtal.cif, chain A (#24) with Golph3_ Q9CRA5.pdb, chain
    45658 A (#11), sequence alignment score = 1235.4 
    45659 RMSD between 224 pruned atom pairs is 0.677 angstroms; (across all 239 pairs:
    45660 1.230) 
    45661  
    45662 
    45663 > matchmaker #11 to #24
    45664 
    45665 Parameters 
    45666 --- 
    45667 Chain pairing | bb 
    45668 Alignment algorithm | Needleman-Wunsch 
    45669 Similarity matrix | BLOSUM-62 
    45670 SS fraction | 0.3 
    45671 Gap open (HH/SS/other) | 18/18/6 
    45672 Gap extend | 1 
    45673 SS matrix |  |  | H | S | O 
    45674 ---|---|---|--- 
    45675 H | 6 | -9 | -6 
    45676 S |  | 6 | -6 
    45677 O |  |  | 4 
    45678 Iteration cutoff | 2 
    45679  
    45680 Matchmaker 3kn1_Golph3_xtal.cif, chain A (#24) with Golph3_ Q9CRA5.pdb, chain
    45681 A (#11), sequence alignment score = 1235.4 
    45682 RMSD between 224 pruned atom pairs is 0.677 angstroms; (across all 239 pairs:
    45683 1.230) 
    45684  
    45685 
    45686 > show #28 models
    45687 
    45688 > close #12
    45689 
    45690 > combine #10
    45691 
    45692 > matchmaker #12 to #28
    45693 
    45694 Parameters 
    45695 --- 
    45696 Chain pairing | bb 
    45697 Alignment algorithm | Needleman-Wunsch 
    45698 Similarity matrix | BLOSUM-62 
    45699 SS fraction | 0.3 
    45700 Gap open (HH/SS/other) | 18/18/6 
    45701 Gap extend | 1 
    45702 SS matrix |  |  | H | S | O 
    45703 ---|---|---|--- 
    45704 H | 6 | -9 | -6 
    45705 S |  | 6 | -6 
    45706 O |  |  | 4 
    45707 Iteration cutoff | 2 
    45708  
    45709 Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C, chain C (#28)
    45710 with copy of CopZ1_P61924.pdb, chain A (#12), sequence alignment score = 682.7 
    45711 RMSD between 136 pruned atom pairs is 0.539 angstroms; (across all 140 pairs:
    45712 0.678) 
    45713  
    45714 
    45715 > fitmap #12 inMap #34
    45716 
    45717 Fit molecule copy of CopZ1_P61924.pdb (#12) to map
    45718 relion_locres_filtered_20240326_GT.mrc (#34) using 1420 atoms 
    45719 average map value = 0.006745, steps = 64 
    45720 shifted from previous position = 0.39 
    45721 rotated from previous position = 4.83 degrees 
    45722 atoms outside contour = 736, contour level = 0.0064458 
    45723  
    45724 Position of copy of CopZ1_P61924.pdb (#12) relative to
    45725 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45726 Matrix rotation and translation 
    45727 0.27949610 0.26259205 0.92354066 296.75539420 
    45728 0.23510266 -0.95131032 0.19933746 181.82495698 
    45729 0.93091819 0.16141282 -0.32762361 253.34470051 
    45730 Axis -0.79981086 -0.15558823 -0.57973691 
    45731 Axis point 0.00000000 62.15359640 18.24995244 
    45732 Rotation angle (degrees) 178.64147557 
    45733 Shift along axis -412.51128564 
    45734  
    45735 
    45736 > fitmap #12 inMap #34
    45737 
    45738 Fit molecule copy of CopZ1_P61924.pdb (#12) to map
    45739 relion_locres_filtered_20240326_GT.mrc (#34) using 1420 atoms 
    45740 average map value = 0.006745, steps = 28 
    45741 shifted from previous position = 0.0184 
    45742 rotated from previous position = 0.0572 degrees 
    45743 atoms outside contour = 738, contour level = 0.0064458 
    45744  
    45745 Position of copy of CopZ1_P61924.pdb (#12) relative to
    45746 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45747 Matrix rotation and translation 
    45748 0.27909472 0.26258099 0.92366519 296.74803660 
    45749 0.23427529 -0.95144081 0.19968845 181.83677489 
    45750 0.93124714 0.16065994 -0.32705834 253.33531105 
    45751 Axis -0.79968349 -0.15535216 -0.57997588 
    45752 Axis point 0.00000000 62.20182981 18.15991470 
    45753 Rotation angle (degrees) 178.60170243 
    45754 Shift along axis -412.48161185 
    45755  
    45756 
    45757 > fitmap #28 inMap #34
    45758 
    45759 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) to map
    45760 relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms 
    45761 average map value = 0.007773, steps = 48 
    45762 shifted from previous position = 0.0142 
    45763 rotated from previous position = 0.0418 degrees 
    45764 atoms outside contour = 478, contour level = 0.0064458 
    45765  
    45766 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) relative
    45767 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45768 Matrix rotation and translation 
    45769 -0.56968892 -0.71660451 0.40240837 245.63689092 
    45770 -0.48577288 -0.10134922 -0.86818952 216.21258450 
    45771 0.66293230 -0.69007702 -0.29036951 214.84991857 
    45772 Axis 0.45553213 -0.66630374 0.59036413 
    45773 Axis point 184.95393002 0.00000000 218.20954457 
    45774 Rotation angle (degrees) 168.72610284 
    45775 Shift along axis 94.67192673 
    45776  
    45777 
    45778 > matchmaker #12 to #28
    45779 
    45780 Parameters 
    45781 --- 
    45782 Chain pairing | bb 
    45783 Alignment algorithm | Needleman-Wunsch 
    45784 Similarity matrix | BLOSUM-62 
    45785 SS fraction | 0.3 
    45786 Gap open (HH/SS/other) | 18/18/6 
    45787 Gap extend | 1 
    45788 SS matrix |  |  | H | S | O 
    45789 ---|---|---|--- 
    45790 H | 6 | -9 | -6 
    45791 S |  | 6 | -6 
    45792 O |  |  | 4 
    45793 Iteration cutoff | 2 
    45794  
    45795 Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C, chain C (#28)
    45796 with copy of CopZ1_P61924.pdb, chain A (#12), sequence alignment score = 682.7 
    45797 RMSD between 136 pruned atom pairs is 0.539 angstroms; (across all 140 pairs:
    45798 0.678) 
    45799  
    45800 
    45801 > hide #12 models
    45802 
    45803 > hide #10 models
    45804 
    45805 > hide #11 models
    45806 
    45807 > hide #!9 models
    45808 
    45809 > hide #8 models
    45810 
    45811 > hide #7 models
    45812 
    45813 > hide #6 models
    45814 
    45815 > hide #5 models
    45816 
    45817 > hide #!4 models
    45818 
    45819 > hide #!3 models
    45820 
    45821 > hide #24 models
    45822 
    45823 > show #24 models
    45824 
    45825 > show #!26.1 models
    45826 
    45827 > show #!26.2 models
    45828 
    45829 > show #27.1 models
    45830 
    45831 > show #27.2 models
    45832 
    45833 > show #!29 models
    45834 
    45835 > show #!30 models
    45836 
    45837 > show #!31 models
    45838 
    45839 > hide #!31 models
    45840 
    45841 > show #32.1 models
    45842 
    45843 > show #32.2 models
    45844 
    45845 > fitmap #32.2 inMap #34
    45846 
    45847 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map
    45848 relion_locres_filtered_20240326_GT.mrc (#34) using 1222 atoms 
    45849 average map value = 0.00967, steps = 40 
    45850 shifted from previous position = 0.021 
    45851 rotated from previous position = 0.0347 degrees 
    45852 atoms outside contour = 445, contour level = 0.0064458 
    45853  
    45854 Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to
    45855 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45856 Matrix rotation and translation 
    45857 0.97959254 0.04144497 0.19667426 249.11650249 
    45858 -0.05619291 0.99596256 0.07000672 194.53498036 
    45859 -0.19297878 -0.07962976 0.97796641 284.10165336 
    45860 Axis -0.34907553 0.90899186 -0.22777197 
    45861 Axis point 1632.26880529 0.00000000 -1141.93249083 
    45862 Rotation angle (degrees) 12.37637091 
    45863 Shift along axis 25.15984564 
    45864  
    45865 
    45866 > fitmap #32.1 inMap #34
    45867 
    45868 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map
    45869 relion_locres_filtered_20240326_GT.mrc (#34) using 2991 atoms 
    45870 average map value = 0.01065, steps = 48 
    45871 shifted from previous position = 0.0261 
    45872 rotated from previous position = 0.0371 degrees 
    45873 atoms outside contour = 1247, contour level = 0.0064458 
    45874  
    45875 Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to
    45876 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45877 Matrix rotation and translation 
    45878 0.99553470 -0.07935222 0.05112623 253.52559741 
    45879 0.06877173 0.98070360 0.18300518 192.96746113 
    45880 -0.06466154 -0.17867197 0.98178165 287.89707254 
    45881 Axis -0.88727983 0.28405486 0.36338320 
    45882 Axis point 0.00000000 1842.64101745 -961.84044084 
    45883 Rotation angle (degrees) 11.75998331 
    45884 Shift along axis -65.51784426 
    45885  
    45886 
    45887 > fitmap #32.1 inMap #34
    45888 
    45889 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map
    45890 relion_locres_filtered_20240326_GT.mrc (#34) using 2991 atoms 
    45891 average map value = 0.01065, steps = 48 
    45892 shifted from previous position = 0.0296 
    45893 rotated from previous position = 0.0293 degrees 
    45894 atoms outside contour = 1245, contour level = 0.0064458 
    45895  
    45896 Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to
    45897 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    45898 Matrix rotation and translation 
    45899 0.99549817 -0.07949331 0.05161596 253.50777442 
    45900 0.06882177 0.98069682 0.18302269 192.95935324 
    45901 -0.06516868 -0.17864645 0.98175276 287.89709900 
    45902 Axis -0.88650634 0.28625700 0.36354291 
    45903 Axis point 0.00000000 1841.69475761 -961.45966514 
    45904 Rotation angle (degrees) 11.77012642 
    45905 Shift along axis -64.83733407 
    45906  
    45907 
    45908 > show #!35 models
    45909 
    45910 > show #!36 models
    45911 
    45912 > show #!37 models
    45913 
    45914 > show #38 models
    45915 
    45916 > show #39 models
    45917 
    45918 > hide #24,28,38-39#26.3#27.1-2#32.1-2#!29-30,35-37#!26.1-2 atoms
    45919 
    45920 > show #25.3 models
    45921 
    45922 > hide #25.3 models
    45923 
    45924 > show #25.3 models
    45925 
    45926 > hide #25.3 models
    45927 
    45928 > show #25.3 models
    45929 
    45930 > hide #25.3 models
    45931 
    45932 > show #!25.4 models
    45933 
    45934 > close #25.4
    45935 
    45936 > show #!25.6 models
    45937 
    45938 > hide #!25.6 models
    45939 
    45940 > show #!25.6 models
    45941 
    45942 > hide #!25.6 models
    45943 
    45944 > show #!25.6 models
    45945 
    45946 > hide #!25.6 models
    45947 
    45948 > show #!25.6 models
    45949 
    45950 > hide #!25.6 models
    45951 
    45952 > show #!25.6 models
    45953 
    45954 > hide #!25.6 models
    45955 
    45956 > show #!25.6 models
    45957 
    45958 > hide #!25.6 models
    45959 
    45960 > show #!25.6 models
    45961 
    45962 > hide #!25.6 models
    45963 
    45964 > show #!25.6 models
    45965 
    45966 > hide #!25.6 models
    45967 
    45968 > show #25.3 models
    45969 
    45970 > hide #25.3 models
    45971 
    45972 > show #!25.2 models
    45973 
    45974 > hide #!25.2 models
    45975 
    45976 > show #!25.2 models
    45977 
    45978 > hide #!25.2 models
    45979 
    45980 > show #!25.2 models
    45981 
    45982 > hide #!25.2 models
    45983 
    45984 > show #25.1 models
    45985 
    45986 > hide #25.1 models
    45987 
    45988 > show #25.1 models
    45989 
    45990 > show #!25.2 models
    45991 
    45992 > show #25.3 models
    45993 
    45994 > show #!25.6 models
    45995 
    45996 > hide #!25.6 models
    45997 
    45998 > hide #25.3 models
    45999 
    46000 > hide #!25.2 models
    46001 
    46002 > hide #25.1 models
    46003 
    46004 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    46005 > dataset/Chimera sessions/20240406_leaf_fitting_v25.cxs"
    46006 
    46007 [Repeated 1 time(s)]
    46008 
    46009 ——— End of log from Mon Apr 15 16:36:47 2024 ———
    46010 
    46011 opened ChimeraX session 
    46012 
    46013 > show #!25.2 models
    46014 
    46015 > hide #!25.2 models
    46016 
    46017 > show #!4 models
    46018 
    46019 > show #!9 models
    46020 
    46021 > show #!3 models
    46022 
    46023 > hide #!32 models
    46024 
    46025 > show #!32 models
    46026 
    46027 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/Structure
    46028 > files/alphafold/fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif"
    46029 
    46030 Chain information for fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif #40 
    46031 --- 
    46032 Chain | Description 
    46033 A | . 
    46034 B | . 
    46035 C | . 
    46036 D | . 
    46037 E | . 
    46038 F | . 
    46039 G | . 
    46040 H | . 
    46041  
    46042 
    46043 > select add #40
    46044 
    46045 39508 atoms, 40254 bonds, 5000 residues, 1 model selected 
    46046 
    46047 > hide sel atoms
    46048 
    46049 > show sel cartoons
    46050 
    46051 > ui mousemode right "translate selected models"
    46052 
    46053 > view matrix models #40,1,0,0,234.59,0,1,0,391.2,0,0,1,309.71
    46054 
    46055 > view matrix models #40,1,0,0,284.73,0,1,0,301.14,0,0,1,305.21
    46056 
    46057 > view matrix models #40,1,0,0,402.41,0,1,0,470.42,0,0,1,302.24
    46058 
    46059 > ui mousemode right "rotate selected models"
    46060 
    46061 > view matrix models
    46062 > #40,-0.16022,0.94225,0.29411,411.46,0.73565,0.31265,-0.60089,467.05,-0.65814,0.12009,-0.74326,318.3
    46063 
    46064 > view matrix models
    46065 > #40,0.86,0.41775,0.29305,400.37,-0.0030509,0.57848,-0.81569,476.76,-0.51028,0.7006,0.49877,307.01
    46066 
    46067 > view matrix models
    46068 > #40,0.85383,0.41387,-0.31573,403.09,-0.00082885,-0.60545,-0.79589,484.53,-0.52055,0.67981,-0.5166,311.64
    46069 
    46070 > ui mousemode right "translate selected models"
    46071 
    46072 > view matrix models
    46073 > #40,0.85383,0.41387,-0.31573,252.84,-0.00082885,-0.60545,-0.79589,386.37,-0.52055,0.67981,-0.5166,265.49
    46074 
    46075 > view matrix models
    46076 > #40,0.85383,0.41387,-0.31573,331.52,-0.00082885,-0.60545,-0.79589,336.66,-0.52055,0.67981,-0.5166,323.89
    46077 
    46078 > ui mousemode right "rotate selected models"
    46079 
    46080 > view matrix models
    46081 > #40,0.57393,0.75462,-0.31803,333.26,0.64193,-0.65572,-0.39744,326.1,-0.50846,0.023945,-0.86075,329.56
    46082 
    46083 > view matrix models
    46084 > #40,0.52833,0.8481,0.039831,331.76,0.82036,-0.49783,-0.28139,322,-0.21882,0.18134,-0.95877,324.79
    46085 
    46086 > ui mousemode right "translate selected models"
    46087 
    46088 > view matrix models
    46089 > #40,0.52833,0.8481,0.039831,328.27,0.82036,-0.49783,-0.28139,321.63,-0.21882,0.18134,-0.95877,318.64
    46090 
    46091 > ui tool show "Fit in Map"
    46092 
    46093 > fitmap #40 inMap #34
    46094 
    46095 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    46096 relion_locres_filtered_20240326_GT.mrc (#34) using 39508 atoms 
    46097 average map value = 0.004388, steps = 200 
    46098 shifted from previous position = 8.17 
    46099 rotated from previous position = 17.6 degrees 
    46100 atoms outside contour = 32899, contour level = 0.0064458 
    46101  
    46102 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    46103 relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    46104 Matrix rotation and translation 
    46105 0.58472728 0.79380900 -0.16721630 266.82467508 
    46106 0.79525538 -0.60160797 -0.07507824 245.55671941 
    46107 -0.16019644 -0.08907937 -0.98305746 234.46350673 
    46108 Axis -0.89014628 -0.44629997 0.09195612 
    46109 Axis point 0.00000000 56.47232383 130.79238037 
    46110 Rotation angle (degrees) 179.54939215 
    46111 Shift along axis -325.54459557 
    46112  
    46113 
    46114 > ui mousemode right "rotate selected models"
    46115 
    46116 > view matrix models
    46117 > #40,0.37648,0.90384,-0.20331,331.11,0.78777,-0.42782,-0.44315,322.32,-0.48752,0.006674,-0.87309,323.28
    46118 
    46119 > view matrix models
    46120 > #40,0.31321,0.93565,-0.16265,331.63,0.79103,-0.3518,-0.5005,322.01,-0.52551,0.028098,-0.85032,323.58
    46121 
    46122 > view matrix models
    46123 > #40,0.24573,0.95264,-0.17917,332.55,0.91774,-0.28814,-0.27335,318.8,-0.31203,-0.097263,-0.94508,321.77
    46124 
    46125 > ui mousemode right "translate selected models"
    46126 
    46127 > view matrix models
    46128 > #40,0.24573,0.95264,-0.17917,321.28,0.91774,-0.28814,-0.27335,321.98,-0.31203,-0.097263,-0.94508,328.46
    46129 
    46130 > view matrix models
    46131 > #40,0.24573,0.95264,-0.17917,312.5,0.91774,-0.28814,-0.27335,316.29,-0.31203,-0.097263,-0.94508,326.49
    46132 
    46133 > view matrix models
    46134 > #40,0.24573,0.95264,-0.17917,320.62,0.91774,-0.28814,-0.27335,305.75,-0.31203,-0.097263,-0.94508,330.28
    46135 
    46136 > view matrix models
    46137 > #40,0.24573,0.95264,-0.17917,306.25,0.91774,-0.28814,-0.27335,324.27,-0.31203,-0.097263,-0.94508,339.84
    46138 
    46139 > fitmap #40 inMap #34
    46140 
    46141 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    46142 relion_locres_filtered_20240326_GT.mrc (#34) using 39508 atoms 
    46143 average map value = 0.004497, steps = 208 
    46144 shifted from previous position = 31.1 
    46145 rotated from previous position = 15.5 degrees 
    46146 atoms outside contour = 31836, contour level = 0.0064458 
    46147  
    46148 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    46149 relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    46150 Matrix rotation and translation 
    46151 0.21859002 0.87498356 -0.43199791 268.05474712 
    46152 0.89192099 -0.35873760 -0.27528948 246.27440060 
    46153 -0.39584766 -0.32513247 -0.85883265 245.13026030 
    46154 Axis -0.78050970 -0.56609006 0.26522945 
    46155 Axis point 0.00000000 29.20665060 167.23281914 
    46156 Rotation angle (degrees) 178.17024775 
    46157 Shift along axis -283.61705421 
    46158  
    46159 
    46160 > view matrix models
    46161 > #40,0.20524,0.87745,-0.43353,298.83,0.89848,-0.34457,-0.27203,322.09,-0.38808,-0.33369,-0.8591,337.92
    46162 
    46163 > ui mousemode right "rotate selected models"
    46164 
    46165 > view matrix models
    46166 > #40,-0.011958,0.99618,0.086488,298.92,0.92221,0.04442,-0.38413,319.64,-0.38651,0.075166,-0.91922,335.43
    46167 
    46168 > view matrix models
    46169 > #40,0.096569,0.99434,0.044315,297.56,0.9034,-0.068875,-0.42323,320.83,-0.41778,0.080905,-0.90494,335.78
    46170 
    46171 > view matrix models
    46172 > #40,0.24162,0.97007,-0.024311,295.94,0.87677,-0.22898,-0.42289,322.28,-0.4158,0.080863,-0.90586,335.76
    46173 
    46174 > view matrix models
    46175 > #40,0.0047045,0.99981,-0.018662,299.1,0.89663,-0.01248,-0.44261,320.63,-0.44276,-0.01465,-0.89652,336.74
    46176 
    46177 > ui mousemode right "translate selected models"
    46178 
    46179 > view matrix models
    46180 > #40,0.0047045,0.99981,-0.018662,314.77,0.89663,-0.01248,-0.44261,320.29,-0.44276,-0.01465,-0.89652,340.63
    46181 
    46182 > hide #39 models
    46183 
    46184 > hide #38 models
    46185 
    46186 > hide #!37 models
    46187 
    46188 > hide #!36 models
    46189 
    46190 > hide #!35 models
    46191 
    46192 > show #!35 models
    46193 
    46194 > show #!36 models
    46195 
    46196 > show #!37 models
    46197 
    46198 > show #38 models
    46199 
    46200 > show #39 models
    46201 
    46202 > select subtract #40
    46203 
    46204 Nothing selected 
    46205 
    46206 > select add #40
    46207 
    46208 39508 atoms, 40254 bonds, 5000 residues, 1 model selected 
    46209 
    46210 > hide #!34 models
    46211 
    46212 > view matrix models
    46213 > #40,0.0047045,0.99981,-0.018662,303.33,0.89663,-0.01248,-0.44261,331.3,-0.44276,-0.01465,-0.89652,331.63
    46214 
    46215 > view matrix models
    46216 > #40,0.0047045,0.99981,-0.018662,312.1,0.89663,-0.01248,-0.44261,323.64,-0.44276,-0.01465,-0.89652,350.59
    46217 
    46218 > view matrix models
    46219 > #40,0.0047045,0.99981,-0.018662,297.07,0.89663,-0.01248,-0.44261,331.48,-0.44276,-0.01465,-0.89652,341.31
    46220 
    46221 > view matrix models
    46222 > #40,0.0047045,0.99981,-0.018662,298.07,0.89663,-0.01248,-0.44261,326.15,-0.44276,-0.01465,-0.89652,341.83
    46223 
    46224 > view matrix models
    46225 > #40,0.0047045,0.99981,-0.018662,298.51,0.89663,-0.01248,-0.44261,325.59,-0.44276,-0.01465,-0.89652,334.13
    46226 
    46227 > view matrix models
    46228 > #40,0.0047045,0.99981,-0.018662,306.69,0.89663,-0.01248,-0.44261,325.39,-0.44276,-0.01465,-0.89652,325.25
    46229 
    46230 > ui mousemode right "rotate selected models"
    46231 
    46232 > view matrix models
    46233 > #40,-0.092242,0.9883,0.12146,307.55,0.8583,0.14075,-0.49347,325.14,-0.5048,0.058726,-0.86124,325.49
    46234 
    46235 > show #!34 models
    46236 
    46237 > fitmap #40 inMap #34
    46238 
    46239 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    46240 relion_locres_filtered_20240326_GT.mrc (#34) using 39508 atoms 
    46241 average map value = 0.004389, steps = 164 
    46242 shifted from previous position = 13.9 
    46243 rotated from previous position = 12.3 degrees 
    46244 atoms outside contour = 32253, contour level = 0.0064458 
    46245  
    46246 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    46247 relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    46248 Matrix rotation and translation 
    46249 -0.10637774 0.98314105 0.14871942 249.35910865 
    46250 0.72385981 0.17911285 -0.66629241 251.93157492 
    46251 -0.68169698 0.03677333 -0.73070990 236.30563794 
    46252 Axis 0.62855969 0.74241460 -0.23180441 
    46253 Axis point 80.49126806 0.00000000 143.53994937 
    46254 Rotation angle (degrees) 145.99485923 
    46255 Shift along axis 288.99807412 
    46256  
    46257 
    46258 > hide #!34 models
    46259 
    46260 > show #!34 models
    46261 
    46262 > select subtract #40
    46263 
    46264 Nothing selected 
    46265 
    46266 > hide #40 models
    46267 
    46268 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    46269 > dataset/Chimera sessions/20240521_leaf_fitting_v26.cxs"
    46270 
    46271 > hide #39 models
    46272 
    46273 > hide #38 models
    46274 
    46275 > hide #!37 models
    46276 
    46277 > hide #!36 models
    46278 
    46279 > hide #!35 models
    46280 
    46281 > hide #!34 models
    46282 
    46283 > show #!34 models
    46284 
    46285 > hide #!30 models
    46286 
    46287 > hide #!29 models
    46288 
    46289 > hide #28 models
    46290 
    46291 > hide #!27 models
    46292 
    46293 > hide #!26 models
    46294 
    46295 > hide #!25 models
    46296 
    46297 > hide #24 models
    46298 
    46299 > hide #!9 models
    46300 
    46301 > hide #!4 models
    46302 
    46303 > hide #!3 models
    46304 
    46305 > hide #!32 models
    46306 
    46307 > show #40 models
    46308 
    46309 > select add #40
    46310 
    46311 39508 atoms, 40254 bonds, 5000 residues, 1 model selected 
    46312 
    46313 > view matrix models
    46314 > #40,0.49541,0.86394,0.090463,304.34,0.73844,-0.36401,-0.56763,331.05,-0.45747,0.34801,-0.8183,308.13
    46315 
    46316 > ui mousemode right "translate selected models"
    46317 
    46318 > view matrix models
    46319 > #40,0.49541,0.86394,0.090463,229.31,0.73844,-0.36401,-0.56763,383.49,-0.45747,0.34801,-0.8183,249.02
    46320 
    46321 > view matrix models
    46322 > #40,0.49541,0.86394,0.090463,253.32,0.73844,-0.36401,-0.56763,374.1,-0.45747,0.34801,-0.8183,201.17
    46323 
    46324 > select subtract #40
    46325 
    46326 Nothing selected 
    46327 
    46328 > select #40/A
    46329 
    46330 9740 atoms, 9959 bonds, 1224 residues, 1 model selected 
    46331 
    46332 > color sel blue
    46333 
    46334 > select add #40
    46335 
    46336 39508 atoms, 40254 bonds, 5000 residues, 1 model selected 
    46337 
    46338 > select subtract #40
    46339 
    46340 Nothing selected 
    46341 
    46342 > select #40/b
    46343 
    46344 7507 atoms, 7626 bonds, 953 residues, 1 model selected 
    46345 
    46346 > color sel dark green
    46347 
    46348 > select add #40
    46349 
    46350 39508 atoms, 40254 bonds, 5000 residues, 1 model selected 
    46351 
    46352 > select subtract #40
    46353 
    46354 Nothing selected 
    46355 
    46356 > select #40/c
    46357 
    46358 7218 atoms, 7376 bonds, 906 residues, 1 model selected 
    46359 
    46360 > color sel cyan
    46361 
    46362 > select add #40
    46363 
    46364 39508 atoms, 40254 bonds, 5000 residues, 1 model selected 
    46365 
    46366 > select subtract #40
    46367 
    46368 Nothing selected 
    46369 
    46370 > select #40/d
    46371 
    46372 4011 atoms, 4079 bonds, 511 residues, 1 model selected 
    46373 
    46374 > color sel chocolate
    46375 
    46376 > select add #40
    46377 
    46378 39508 atoms, 40254 bonds, 5000 residues, 1 model selected 
    46379 
    46380 > select subtract #40
    46381 
    46382 Nothing selected 
    46383 
    46384 > select #40/e
    46385 
    46386 2423 atoms, 2468 bonds, 308 residues, 1 model selected 
    46387 
    46388 > select #40/e
    46389 
    46390 2423 atoms, 2468 bonds, 308 residues, 1 model selected 
    46391 
    46392 > color sel orange
    46393 
    46394 > select add #40
    46395 
    46396 39508 atoms, 40254 bonds, 5000 residues, 1 model selected 
    46397 
    46398 > select subtract #40
    46399 
    46400 Nothing selected 
    46401 
    46402 > select #40/f
    46403 
    46404 6841 atoms, 6958 bonds, 874 residues, 1 model selected 
    46405 
    46406 > color sel lime
    46407 
    46408 > select add #40
    46409 
    46410 39508 atoms, 40254 bonds, 5000 residues, 1 model selected 
    46411 
    46412 > select subtract #40
    46413 
    46414 Nothing selected 
    46415 
    46416 > select #40/g
    46417 
    46418 1420 atoms, 1441 bonds, 177 residues, 1 model selected 
    46419 
    46420 > color sel yellow
    46421 
    46422 > select #40/j
    46423 
    46424 Nothing selected 
    46425 
    46426 > hbonds
    46427 
    46428 119 atoms were skipped as donors/acceptors due to missing heavy-atom bond
    46429 partners 
    46430 
    46431 22431 hydrogen bonds found 
    46432 
    46433 > select #40/h
    46434 
    46435 348 atoms, 347 bonds, 28 pseudobonds, 47 residues, 2 models selected 
    46436 
    46437 > color sel purple
    46438 
    46439 > select add #40
    46440 
    46441 39508 atoms, 40254 bonds, 4621 pseudobonds, 5000 residues, 2 models selected 
    46442 
    46443 > select subtract #40
    46444 
    46445 Nothing selected 
    46446 
    46447 > select add #40
    46448 
    46449 39508 atoms, 40254 bonds, 4621 pseudobonds, 5000 residues, 2 models selected 
    46450 
    46451 > select subtract #40
    46452 
    46453 Nothing selected 
    46454 
    46455 > close #41
    46456 
    46457 > select add #40
    46458 
    46459 39508 atoms, 40254 bonds, 5000 residues, 1 model selected 
    46460 
    46461 > select subtract #40
    46462 
    46463 Nothing selected 
    46464 
    46465 > show #38 models
    46466 
    46467 > hide #38 models
    46468 
    46469 > show #!3 models
    46470 
    46471 > ui tool show Matchmaker
    46472 
    46473 > matchmaker #40 to #3
    46474 
    46475 Parameters 
    46476 --- 
    46477 Chain pairing | bb 
    46478 Alignment algorithm | Needleman-Wunsch 
    46479 Similarity matrix | BLOSUM-62 
    46480 SS fraction | 0.3 
    46481 Gap open (HH/SS/other) | 18/18/6 
    46482 Gap extend | 1 
    46483 SS matrix |  |  | H | S | O 
    46484 ---|---|---|--- 
    46485 H | 6 | -9 | -6 
    46486 S |  | 6 | -6 
    46487 O |  |  | 4 
    46488 Iteration cutoff | 2 
    46489  
    46490 Matchmaker CopA_F8WHL2.pdb, chain A (#3) with
    46491 fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain A (#40), sequence
    46492 alignment score = 5650.7 
    46493 RMSD between 321 pruned atom pairs is 0.997 angstroms; (across all 824 pairs:
    46494 9.767) 
    46495  
    46496 
    46497 > hide #!3 models
    46498 
    46499 > show #!3 models
    46500 
    46501 > hide #40 models
    46502 
    46503 > show #40 models
    46504 
    46505 > hide #40 models
    46506 
    46507 > show #40 models
    46508 
    46509 > hide #!34 models
    46510 
    46511 > hide #40 models
    46512 
    46513 > show #40 models
    46514 
    46515 > hide #40 models
    46516 
    46517 > show #40 models
    46518 
    46519 > hide #!3 models
    46520 
    46521 > show #!3 models
    46522 
    46523 > hide #!3 models
    46524 
    46525 > show #!3 models
    46526 
    46527 > ui mousemode right select
    46528 
    46529 > hide #40 models
    46530 
    46531 > show #40 models
    46532 
    46533 > ui tool show Matchmaker
    46534 
    46535 > matchmaker #40 to #4
    46536 
    46537 Parameters 
    46538 --- 
    46539 Chain pairing | bb 
    46540 Alignment algorithm | Needleman-Wunsch 
    46541 Similarity matrix | BLOSUM-62 
    46542 SS fraction | 0.3 
    46543 Gap open (HH/SS/other) | 18/18/6 
    46544 Gap extend | 1 
    46545 SS matrix |  |  | H | S | O 
    46546 ---|---|---|--- 
    46547 H | 6 | -9 | -6 
    46548 S |  | 6 | -6 
    46549 O |  |  | 4 
    46550 Iteration cutoff | 2 
    46551  
    46552 Matchmaker CopB_Q9JIF7.pdb, chain A (#4) with
    46553 fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain B (#40), sequence
    46554 alignment score = 4735.7 
    46555 RMSD between 278 pruned atom pairs is 1.072 angstroms; (across all 914 pairs:
    46556 6.141) 
    46557  
    46558 
    46559 > show #!34 models
    46560 
    46561 > show #!2 models
    46562 
    46563 > hide #!3 models
    46564 
    46565 > hide #!2 models
    46566 
    46567 > hide #!34 models
    46568 
    46569 > ui mousemode right select
    46570 
    46571 > select #40/A:634
    46572 
    46573 12 atoms, 12 bonds, 1 residue, 1 model selected 
    46574 
    46575 > select clear
    46576 
    46577 > select #40/H:46
    46578 
    46579 9 atoms, 8 bonds, 1 residue, 1 model selected 
    46580 
    46581 > select #40/H:8
    46582 
    46583 6 atoms, 5 bonds, 1 residue, 1 model selected 
    46584 
    46585 > select #40/H:9
    46586 
    46587 6 atoms, 5 bonds, 1 residue, 1 model selected 
    46588 
    46589 > select #40/H:10
    46590 
    46591 4 atoms, 3 bonds, 1 residue, 1 model selected 
    46592 
    46593 > select #40/H:11
    46594 
    46595 8 atoms, 7 bonds, 1 residue, 1 model selected 
    46596 
    46597 > select #40/H:12
    46598 
    46599 7 atoms, 6 bonds, 1 residue, 1 model selected 
    46600 
    46601 > select #40/H:13
    46602 
    46603 9 atoms, 8 bonds, 1 residue, 1 model selected 
    46604 
    46605 > show #!34 models
    46606 
    46607 > volume #34 level 0.01184
    46608 
    46609 > show #!4 models
    46610 
    46611 > hide #!4 models
    46612 
    46613 > show #!4 models
    46614 
    46615 > hide #!4 models
    46616 
    46617 > show #!4 models
    46618 
    46619 > hide #!4 models
    46620 
    46621 > show #!3 models
    46622 
    46623 > hide #!3 models
    46624 
    46625 > show #!4 models
    46626 
    46627 > hide #!4 models
    46628 
    46629 > show #!4 models
    46630 
    46631 > hide #!4 models
    46632 
    46633 > show #5 models
    46634 
    46635 > hide #5 models
    46636 
    46637 > show #6 models
    46638 
    46639 > hide #6 models
    46640 
    46641 > show #7 models
    46642 
    46643 > hide #7 models
    46644 
    46645 > show #7 models
    46646 
    46647 > hide #7 models
    46648 
    46649 > show #8 models
    46650 
    46651 > hide #8 models
    46652 
    46653 > show #!9 models
    46654 
    46655 > show #8 models
    46656 
    46657 > hide #8 models
    46658 
    46659 > select add #40
    46660 
    46661 39508 atoms, 40254 bonds, 5000 residues, 1 model selected 
    46662 
    46663 > select #40/B #40/h
    46664 
    46665 7855 atoms, 7973 bonds, 1000 residues, 1 model selected 
    46666 
    46667 > fitmap sel inMap #34
    46668 
    46669 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    46670 relion_locres_filtered_20240326_GT.mrc (#34) using 7855 atoms 
    46671 average map value = 0.008027, steps = 96 
    46672 shifted from previous position = 1.99 
    46673 rotated from previous position = 4.54 degrees 
    46674 atoms outside contour = 5565, contour level = 0.011843 
    46675  
    46676 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    46677 relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    46678 Matrix rotation and translation 
    46679 -0.55133787 0.81826284 0.16270371 218.63511633 
    46680 0.82536859 0.56340587 -0.03661333 261.19268218 
    46681 -0.12162755 0.11410422 -0.98599543 268.92489827 
    46682 Axis 0.46823282 0.88332933 0.02207537 
    46683 Axis point 52.07818554 0.00000000 128.45275782 
    46684 Rotation angle (degrees) 170.73836738 
    46685 Shift along axis 339.02791132 
    46686  
    46687 
    46688 > hide #40/A
    46689 
    46690 > hide #40/C
    46691 
    46692 > hide #40/D
    46693 
    46694 > hide #40/E
    46695 
    46696 > hide #40/F
    46697 
    46698 > hide #40/g
    46699 
    46700 > select #40/A
    46701 
    46702 9740 atoms, 9959 bonds, 1224 residues, 1 model selected 
    46703 
    46704 > cartoon hide sel
    46705 
    46706 > select #40/C
    46707 
    46708 7218 atoms, 7376 bonds, 906 residues, 1 model selected 
    46709 
    46710 > cartoon hide sel
    46711 
    46712 > select #40/D
    46713 
    46714 4011 atoms, 4079 bonds, 511 residues, 1 model selected 
    46715 
    46716 > cartoon hide sel
    46717 
    46718 > select #40/E
    46719 
    46720 2423 atoms, 2468 bonds, 308 residues, 1 model selected 
    46721 
    46722 > cartoon hide sel
    46723 
    46724 > select #40/F
    46725 
    46726 6841 atoms, 6958 bonds, 874 residues, 1 model selected 
    46727 
    46728 > cartoon hide sel
    46729 
    46730 > select #40/G
    46731 
    46732 1420 atoms, 1441 bonds, 177 residues, 1 model selected 
    46733 
    46734 > cartoon hide sel
    46735 
    46736 > hide #!9 models
    46737 
    46738 > volume #34 level 0.00987
    46739 
    46740 > select #40/B #40/h
    46741 
    46742 7855 atoms, 7973 bonds, 1000 residues, 1 model selected 
    46743 
    46744 > fitmap sel inMap #34
    46745 
    46746 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    46747 relion_locres_filtered_20240326_GT.mrc (#34) using 7855 atoms 
    46748 average map value = 0.008027, steps = 124 
    46749 shifted from previous position = 0.0117 
    46750 rotated from previous position = 0.0075 degrees 
    46751 atoms outside contour = 5046, contour level = 0.0098704 
    46752  
    46753 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    46754 relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    46755 Matrix rotation and translation 
    46756 -0.55130906 0.81830346 0.16259698 218.64123658 
    46757 0.82538951 0.56337101 -0.03667798 261.20229085 
    46758 -0.12161615 0.11398494 -0.98601063 268.92086397 
    46759 Axis 0.46825276 0.88332007 0.02202309 
    46760 Axis point 52.07086061 0.00000000 128.45942589 
    46761 Rotation angle (degrees) 170.74215114 
    46762 Shift along axis 339.02705427 
    46763  
    46764 
    46765 > fitmap sel inMap #34
    46766 
    46767 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    46768 relion_locres_filtered_20240326_GT.mrc (#34) using 7855 atoms 
    46769 average map value = 0.008027, steps = 180 
    46770 shifted from previous position = 0.0115 
    46771 rotated from previous position = 0.0183 degrees 
    46772 atoms outside contour = 5042, contour level = 0.0098704 
    46773  
    46774 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    46775 relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    46776 Matrix rotation and translation 
    46777 -0.55153846 0.81816881 0.16249657 218.63118093 
    46778 0.82522764 0.56360153 -0.03677871 261.19672471 
    46779 -0.12167451 0.11381178 -0.98602343 268.91088302 
    46780 Axis 0.46813192 0.88338610 0.02194336 
    46781 Axis point 52.08757088 0.00000000 128.46507520 
    46782 Rotation angle (degrees) 170.74423093 
    46783 Shift along axis 338.98659745 
    46784  
    46785 
    46786 > ui mousemode right "translate selected models"
    46787 
    46788 > view matrix models
    46789 > #40,-0.5624,0.81178,0.15722,286.27,0.81949,0.57256,-0.024894,338.86,-0.11023,0.11484,-0.98725,346.69
    46790 
    46791 > fitmap sel inMap #34
    46792 
    46793 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    46794 relion_locres_filtered_20240326_GT.mrc (#34) using 7855 atoms 
    46795 average map value = 0.008027, steps = 100 
    46796 shifted from previous position = 5.48 
    46797 rotated from previous position = 0.0362 degrees 
    46798 atoms outside contour = 5046, contour level = 0.0098704 
    46799  
    46800 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    46801 relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    46802 Matrix rotation and translation 
    46803 -0.55125874 0.81829194 0.16282541 218.64816997 
    46804 0.82544073 0.56331488 -0.03638629 261.18746369 
    46805 -0.12149658 0.11434447 -0.98598374 268.92316731 
    46806 Axis 0.46827538 0.88330341 0.02220914 
    46807 Axis point 52.07588489 0.00000000 128.43293399 
    46808 Rotation angle (degrees) 170.73839773 
    46809 Shift along axis 339.06788680 
    46810  
    46811 
    46812 > view matrix models
    46813 > #40,-0.56212,0.81191,0.15755,285.77,0.8197,0.57227,-0.024498,339.44,-0.11005,0.11537,-0.98721,347.33
    46814 
    46815 > view matrix models
    46816 > #40,-0.56212,0.81191,0.15755,283.72,0.8197,0.57227,-0.024498,336.84,-0.11005,0.11537,-0.98721,347.63
    46817 
    46818 > fitmap sel inMap #34
    46819 
    46820 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    46821 relion_locres_filtered_20240326_GT.mrc (#34) using 7855 atoms 
    46822 average map value = 0.008027, steps = 128 
    46823 shifted from previous position = 2.9 
    46824 rotated from previous position = 0.0265 degrees 
    46825 atoms outside contour = 5047, contour level = 0.0098704 
    46826  
    46827 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    46828 relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    46829 Matrix rotation and translation 
    46830 -0.55131009 0.81833243 0.16244765 218.64835717 
    46831 0.82540593 0.56334930 -0.03664183 261.20608081 
    46832 -0.12149997 0.11388425 -0.98603659 268.91792299 
    46833 Axis 0.46826242 0.88331540 0.02200455 
    46834 Axis point 52.06055817 0.00000000 128.46307893 
    46835 Rotation angle (degrees) 170.75082647 
    46836 Shift along axis 339.02958194 
    46837  
    46838 
    46839 > fitmap sel inMap #34
    46840 
    46841 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    46842 relion_locres_filtered_20240326_GT.mrc (#34) using 7855 atoms 
    46843 average map value = 0.008027, steps = 84 
    46844 shifted from previous position = 0.0194 
    46845 rotated from previous position = 0.0131 degrees 
    46846 atoms outside contour = 5049, contour level = 0.0098704 
    46847  
    46848 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    46849 relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    46850 Matrix rotation and translation 
    46851 -0.55143936 0.81821808 0.16258478 218.65494305 
    46852 0.82531597 0.56348672 -0.03655513 261.19084196 
    46853 -0.12152443 0.11402588 -0.98601720 268.91027226 
    46854 Axis 0.46818717 0.88335369 0.02206879 
    46855 Axis point 52.08652545 0.00000000 128.44728030 
    46856 Rotation angle (degrees) 170.74592104 
    46857 Shift along axis 339.02985803 
    46858  
    46859 
    46860 > fitmap sel inMap #34
    46861 
    46862 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    46863 relion_locres_filtered_20240326_GT.mrc (#34) using 7855 atoms 
    46864 average map value = 0.008027, steps = 104 
    46865 shifted from previous position = 0.0107 
    46866 rotated from previous position = 0.0337 degrees 
    46867 atoms outside contour = 5045, contour level = 0.0098704 
    46868  
    46869 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    46870 relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    46871 Matrix rotation and translation 
    46872 -0.55110129 0.81836999 0.16296607 218.65986733 
    46873 0.82553973 0.56317113 -0.03636548 261.18645049 
    46874 -0.12153820 0.11449390 -0.98596127 268.92250550 
    46875 Axis 0.46835240 0.88326133 0.02225891 
    46876 Axis point 52.07542258 0.00000000 128.42422789 
    46877 Rotation angle (degrees) 170.73196224 
    46878 Shift along axis 339.09168542 
    46879  
    46880 
    46881 > show #!4 models
    46882 
    46883 > fitmap #4 inMap #34
    46884 
    46885 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    46886 relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms 
    46887 average map value = 0.009133, steps = 44 
    46888 shifted from previous position = 0.0217 
    46889 rotated from previous position = 0.00877 degrees 
    46890 atoms outside contour = 4184, contour level = 0.0098704 
    46891  
    46892 Position of CopB_Q9JIF7.pdb (#4) relative to
    46893 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    46894 Matrix rotation and translation 
    46895 -0.02212550 -0.73061751 0.68242839 220.16058213 
    46896 -0.01331212 0.68275028 0.73053052 241.09652572 
    46897 -0.99966657 0.00707878 -0.02483226 272.96568751 
    46898 Axis -0.36787702 0.85534950 0.36475159 
    46899 Axis point 254.78423417 0.00000000 -62.18356583 
    46900 Rotation angle (degrees) 100.49232066 
    46901 Shift along axis 224.79444223 
    46902  
    46903 
    46904 > hide #!4 models
    46905 
    46906 > show #!4 models
    46907 
    46908 > hide #!4 models
    46909 
    46910 > show #!4 models
    46911 
    46912 > hide #!4 models
    46913 
    46914 > show #!4 models
    46915 
    46916 > hide #!4 models
    46917 
    46918 > show #!4 models
    46919 
    46920 > hide #!4 models
    46921 
    46922 > show #!4 models
    46923 
    46924 > hide #!4 models
    46925 
    46926 > show #!4 models
    46927 
    46928 > hide #!34 models
    46929 
    46930 > hide #!4 models
    46931 
    46932 > show #!4 models
    46933 
    46934 > show #11 models
    46935 
    46936 > hide #11 models
    46937 
    46938 > show #11 models
    46939 
    46940 > hide #11 models
    46941 
    46942 > hide #!4 models
    46943 
    46944 > select add #40
    46945 
    46946 39508 atoms, 40254 bonds, 5000 residues, 1 model selected 
    46947 
    46948 > select subtract #40
    46949 
    46950 Nothing selected 
    46951 
    46952 > show #!34 models
    46953 
    46954 > show #!3 models
    46955 
    46956 > show #5 models
    46957 
    46958 > hide #5 models
    46959 
    46960 > show #39 models
    46961 
    46962 > show #38 models
    46963 
    46964 > hide #38 models
    46965 
    46966 > show #38 models
    46967 
    46968 > hide #38 models
    46969 
    46970 > show #!37 models
    46971 
    46972 > show #!36 models
    46973 
    46974 > show #!35 models
    46975 
    46976 > hide #!35 models
    46977 
    46978 > show #!35 models
    46979 
    46980 > show #!32 models
    46981 
    46982 > hide #!32 models
    46983 
    46984 > show #!32 models
    46985 
    46986 > hide #!32 models
    46987 
    46988 > show #!32 models
    46989 
    46990 > hide #!32 models
    46991 
    46992 > show #!32 models
    46993 
    46994 > show #!31 models
    46995 
    46996 > show #!30 models
    46997 
    46998 > hide #!30 models
    46999 
    47000 > show #!30 models
    47001 
    47002 > show #!29 models
    47003 
    47004 > show #28 models
    47005 
    47006 > hide #28 models
    47007 
    47008 > show #28 models
    47009 
    47010 > hide #28 models
    47011 
    47012 > hide #39 models
    47013 
    47014 > show #39 models
    47015 
    47016 > show #!27 models
    47017 
    47018 > show #!26 models
    47019 
    47020 > hide #!26 models
    47021 
    47022 > show #!26 models
    47023 
    47024 > show #!25 models
    47025 
    47026 > hide #!25 models
    47027 
    47028 > show #!25 models
    47029 
    47030 > hide #!25 models
    47031 
    47032 > show #!25.6 models
    47033 
    47034 > hide #!25.6 models
    47035 
    47036 > show #!25.6 models
    47037 
    47038 > hide #!25.6 models
    47039 
    47040 > show #!9 models
    47041 
    47042 > hide #!3 models
    47043 
    47044 > show #!3 models
    47045 
    47046 > show #24 models
    47047 
    47048 > show #11 models
    47049 
    47050 > hide #11 models
    47051 
    47052 > show #11 models
    47053 
    47054 > hide #11 models
    47055 
    47056 > show #11 models
    47057 
    47058 > hide #11 models
    47059 
    47060 > ui tool show "Side View"
    47061 
    47062 > hide #!34 models
    47063 
    47064 > show #!34 models
    47065 
    47066 > select #40/B #40/h
    47067 
    47068 7855 atoms, 7973 bonds, 1000 residues, 1 model selected 
    47069 
    47070 > view matrix models
    47071 > #40,-0.56197,0.81199,0.15769,282.69,0.8198,0.57212,-0.024475,337.55,-0.11009,0.11552,-0.98719,345.61
    47072 
    47073 > view matrix models
    47074 > #40,-0.56197,0.81199,0.15769,283.28,0.8198,0.57212,-0.024475,338.86,-0.11009,0.11552,-0.98719,344.99
    47075 
    47076 > view matrix models
    47077 > #40,-0.56197,0.81199,0.15769,284.14,0.8198,0.57212,-0.024475,340.07,-0.11009,0.11552,-0.98719,345.26
    47078 
    47079 > fitmap sel inMap #34
    47080 
    47081 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    47082 relion_locres_filtered_20240326_GT.mrc (#34) using 7855 atoms 
    47083 average map value = 0.008027, steps = 92 
    47084 shifted from previous position = 4.57 
    47085 rotated from previous position = 0.022 degrees 
    47086 atoms outside contour = 5048, contour level = 0.0098704 
    47087  
    47088 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    47089 relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    47090 Matrix rotation and translation 
    47091 -0.55110014 0.81840479 0.16279514 218.64168819 
    47092 0.82551278 0.56318841 -0.03670801 261.19751669 
    47093 -0.12172635 0.11415968 -0.98597681 268.91351797 
    47094 Axis 0.46835241 0.88326616 0.02206600 
    47095 Axis point 52.06701893 0.00000000 128.44776774 
    47096 Rotation angle (degrees) 170.73144763 
    47097 Shift along axis 339.04213420 
    47098  
    47099 
    47100 > fitmap sel inMap #34
    47101 
    47102 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    47103 relion_locres_filtered_20240326_GT.mrc (#34) using 7855 atoms 
    47104 average map value = 0.008027, steps = 72 
    47105 shifted from previous position = 0.0174 
    47106 rotated from previous position = 0.0142 degrees 
    47107 atoms outside contour = 5048, contour level = 0.0098704 
    47108  
    47109 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    47110 relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    47111 Matrix rotation and translation 
    47112 -0.55119683 0.81835465 0.16271979 218.65690501 
    47113 0.82548023 0.56325066 -0.03648423 261.19361936 
    47114 -0.12150907 0.11421198 -0.98599756 268.91895596 
    47115 Axis 0.46831203 0.88328562 0.02214385 
    47116 Axis point 52.06914221 0.00000000 128.44120503 
    47117 Rotation angle (degrees) 170.74126999 
    47118 Shift along axis 339.06312999 
    47119  
    47120 
    47121 > hide #!34 models
    47122 
    47123 > show #!34 models
    47124 
    47125 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    47126 > dataset/Chimera sessions/20240521_leaf_fitting_v27.cxs"
    47127 
    47128 > hide #!37 models
    47129 
    47130 > hide #!36 models
    47131 
    47132 > hide #!35 models
    47133 
    47134 > hide #39 models
    47135 
    47136 > hide #!32 models
    47137 
    47138 > hide #!31 models
    47139 
    47140 > hide #!30 models
    47141 
    47142 > hide #!29 models
    47143 
    47144 > hide #!27 models
    47145 
    47146 > hide #!26 models
    47147 
    47148 > hide #!25 models
    47149 
    47150 > hide #24 models
    47151 
    47152 > hide #!9 models
    47153 
    47154 > hide #!3 models
    47155 
    47156 > view matrix models
    47157 > #40,-0.56206,0.81197,0.15744,283.54,0.81974,0.57221,-0.024597,339.16,-0.11006,0.11524,-0.98722,345.42
    47158 
    47159 > view matrix models
    47160 > #40,-0.56206,0.81197,0.15744,283.87,0.81974,0.57221,-0.024597,340.09,-0.11006,0.11524,-0.98722,345.18
    47161 
    47162 > view matrix models
    47163 > #40,-0.56206,0.81197,0.15744,283.79,0.81974,0.57221,-0.024597,340.89,-0.11006,0.11524,-0.98722,345.03
    47164 
    47165 > view matrix models
    47166 > #40,-0.56206,0.81197,0.15744,283.46,0.81974,0.57221,-0.024597,341.23,-0.11006,0.11524,-0.98722,346.54
    47167 
    47168 > fitmap sel inMap #34
    47169 
    47170 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    47171 relion_locres_filtered_20240326_GT.mrc (#34) using 7855 atoms 
    47172 average map value = 0.008027, steps = 108 
    47173 shifted from previous position = 5.26 
    47174 rotated from previous position = 0.0235 degrees 
    47175 atoms outside contour = 5046, contour level = 0.0098704 
    47176  
    47177 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    47178 relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    47179 Matrix rotation and translation 
    47180 -0.55145473 0.81819682 0.16263963 218.63191357 
    47181 0.82528315 0.56352552 -0.03669766 261.19416657 
    47182 -0.12167749 0.11398665 -0.98600286 268.91645801 
    47183 Axis 0.46817099 0.88336356 0.02201698 
    47184 Axis point 52.08701783 0.00000000 128.45637404 
    47185 Rotation angle (degrees) 170.73919393 
    47186 Shift along axis 339.00725471 
    47187  
    47188 
    47189 > hide #!34 models
    47190 
    47191 > ui mousemode right select
    47192 
    47193 > select clear
    47194 
    47195 > ui mousemode right select
    47196 
    47197 Drag select of 148 residues 
    47198 
    47199 > select up
    47200 
    47201 1263 atoms, 1277 bonds, 164 residues, 1 model selected 
    47202 
    47203 > select up
    47204 
    47205 7855 atoms, 7973 bonds, 1000 residues, 1 model selected 
    47206 
    47207 > select down
    47208 
    47209 1263 atoms, 1277 bonds, 164 residues, 1 model selected 
    47210 
    47211 > select clear
    47212 
    47213 Drag select of 154 residues 
    47214 
    47215 > select up
    47216 
    47217 1311 atoms, 1327 bonds, 171 residues, 1 model selected 
    47218 
    47219 > show #!34 models
    47220 
    47221 > fitmap sel inMap #34
    47222 
    47223 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    47224 relion_locres_filtered_20240326_GT.mrc (#34) using 1311 atoms 
    47225 average map value = 0.007817, steps = 64 
    47226 shifted from previous position = 6.37 
    47227 rotated from previous position = 3.82 degrees 
    47228 atoms outside contour = 825, contour level = 0.0098704 
    47229  
    47230 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    47231 relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    47232 Matrix rotation and translation 
    47233 -0.49959872 0.84635064 0.18463943 219.53809976 
    47234 0.85843903 0.51228436 -0.02543959 267.69551574 
    47235 -0.11611871 0.14579210 -0.98247703 270.53710887 
    47236 Axis 0.49446431 0.86849670 0.03490754 
    47237 Axis point 46.53717373 0.00000000 127.56693591 
    47238 Rotation angle (degrees) 170.02905866 
    47239 Shift along axis 350.49021168 
    47240  
    47241 
    47242 > hide #!34 models
    47243 
    47244 > surface sel
    47245 
    47246 > show #!34 models
    47247 
    47248 > surface hidePatches (#!40 & sel)
    47249 
    47250 > hide #!34 models
    47251 
    47252 > ui mousemode right select
    47253 
    47254 > select clear
    47255 
    47256 Drag select of 78 residues 
    47257 
    47258 > select up
    47259 
    47260 928 atoms, 935 bonds, 119 residues, 2 models selected 
    47261 
    47262 > select up
    47263 
    47264 7507 atoms, 7626 bonds, 953 residues, 2 models selected 
    47265 
    47266 > select down
    47267 
    47268 928 atoms, 935 bonds, 119 residues, 2 models selected 
    47269 
    47270 > select clear
    47271 
    47272 Drag select of 118 residues 
    47273 
    47274 > select down
    47275 
    47276 921 atoms, 118 residues, 2 models selected 
    47277 
    47278 > select up
    47279 
    47280 1380 atoms, 1394 bonds, 175 residues, 2 models selected 
    47281 
    47282 > select up
    47283 
    47284 7507 atoms, 7626 bonds, 953 residues, 2 models selected 
    47285 
    47286 > select down
    47287 
    47288 1380 atoms, 1394 bonds, 175 residues, 2 models selected 
    47289 
    47290 > ui mousemode right select
    47291 
    47292 Drag select of 272 residues 
    47293 
    47294 > select up
    47295 
    47296 2962 atoms, 2997 bonds, 372 residues, 2 models selected 
    47297 
    47298 > select up
    47299 
    47300 7507 atoms, 7626 bonds, 953 residues, 2 models selected 
    47301 
    47302 > select down
    47303 
    47304 2962 atoms, 2997 bonds, 372 residues, 2 models selected 
    47305 
    47306 > cartoon hide (#!40 & sel)
    47307 
    47308 Drag select of 48 residues 
    47309 
    47310 > select up
    47311 
    47312 652 atoms, 656 bonds, 84 residues, 2 models selected 
    47313 
    47314 > cartoon hide (#!40 & sel)
    47315 
    47316 Drag select of 29 residues 
    47317 
    47318 > select up
    47319 
    47320 436 atoms, 439 bonds, 54 residues, 2 models selected 
    47321 
    47322 > cartoon hide (#!40 & sel)
    47323 
    47324 Drag select of 3 residues 
    47325 
    47326 > cartoon hide (#!40 & sel)
    47327 
    47328 Drag select of 7 residues 
    47329 
    47330 > select up
    47331 
    47332 92 atoms, 92 bonds, 12 residues, 2 models selected 
    47333 
    47334 > cartoon hide (#!40 & sel)
    47335 
    47336 Drag select of 8 residues 
    47337 
    47338 > select up
    47339 
    47340 7507 atoms, 7626 bonds, 953 residues, 2 models selected 
    47341 
    47342 > select down
    47343 
    47344 65 atoms, 8 residues, 2 models selected 
    47345 Drag select of 9 residues 
    47346 Drag select of 10 residues 
    47347 
    47348 > cartoon hide (#!40 & sel)
    47349 
    47350 Drag select of 267 residues 
    47351 
    47352 > select up
    47353 
    47354 2188 atoms, 2221 bonds, 280 residues, 2 models selected 
    47355 
    47356 > cartoon hide (#!40 & sel)
    47357 
    47358 Drag select of 2 residues 
    47359 
    47360 > cartoon hide (#!40 & sel)
    47361 
    47362 Drag select of 1 residues 
    47363 
    47364 > select up
    47365 
    47366 39 atoms, 38 bonds, 6 residues, 2 models selected 
    47367 
    47368 > cartoon hide (#!40 & sel)
    47369 
    47370 Drag select of 2 residues 
    47371 
    47372 > cartoon hide (#!40 & sel)
    47373 
    47374 > show #!34 models
    47375 
    47376 > show #!4 models
    47377 
    47378 > hide #!34 models
    47379 
    47380 > hide #!4 models
    47381 
    47382 Drag select of 50 residues 
    47383 
    47384 > select up
    47385 
    47386 477 atoms, 484 bonds, 62 residues, 2 models selected 
    47387 
    47388 > select up
    47389 
    47390 7507 atoms, 7626 bonds, 953 residues, 2 models selected 
    47391 
    47392 > show #!34 models
    47393 
    47394 > fitmap sel inMap #34
    47395 
    47396 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    47397 relion_locres_filtered_20240326_GT.mrc (#34) using 7507 atoms 
    47398 average map value = 0.008297, steps = 84 
    47399 shifted from previous position = 6.62 
    47400 rotated from previous position = 3.71 degrees 
    47401 atoms outside contour = 4721, contour level = 0.0098704 
    47402  
    47403 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    47404 relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    47405 Matrix rotation and translation 
    47406 -0.54880618 0.81993615 0.16283888 218.74247183 
    47407 0.82669165 0.56124221 -0.03985101 261.18604987 
    47408 -0.12406733 0.11274707 -0.98584756 268.81795879 
    47409 Axis 0.46948367 0.88269650 0.02078400 
    47410 Axis point 52.04192904 0.00000000 128.56927986 
    47411 Rotation angle (degrees) 170.64698297 
    47412 Shift along axis 338.83114217 
    47413  
    47414 
    47415 > select add #40
    47416 
    47417 39508 atoms, 40254 bonds, 5000 residues, 2 models selected 
    47418 
    47419 > select subtract #40
    47420 
    47421 2 models selected 
    47422 
    47423 > ui tool show Matchmaker
    47424 
    47425 > matchmaker #!40 to #4
    47426 
    47427 Parameters 
    47428 --- 
    47429 Chain pairing | bb 
    47430 Alignment algorithm | Needleman-Wunsch 
    47431 Similarity matrix | BLOSUM-62 
    47432 SS fraction | 0.3 
    47433 Gap open (HH/SS/other) | 18/18/6 
    47434 Gap extend | 1 
    47435 SS matrix |  |  | H | S | O 
    47436 ---|---|---|--- 
    47437 H | 6 | -9 | -6 
    47438 S |  | 6 | -6 
    47439 O |  |  | 4 
    47440 Iteration cutoff | 2 
    47441  
    47442 Matchmaker CopB_Q9JIF7.pdb, chain A (#4) with
    47443 fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain B (#40), sequence
    47444 alignment score = 4735.7 
    47445 RMSD between 278 pruned atom pairs is 1.072 angstroms; (across all 914 pairs:
    47446 6.141) 
    47447  
    47448 
    47449 > undo
    47450 
    47451 [Repeated 2 time(s)]Drag select of 172 residues 
    47452 
    47453 > fitmap sel inMap #34
    47454 
    47455 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    47456 relion_locres_filtered_20240326_GT.mrc (#34) using 1325 atoms 
    47457 average map value = 0.007953, steps = 76 
    47458 shifted from previous position = 5.45 
    47459 rotated from previous position = 2.57 degrees 
    47460 atoms outside contour = 827, contour level = 0.0098704 
    47461  
    47462 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    47463 relative to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    47464 Matrix rotation and translation 
    47465 -0.50508390 0.84461041 0.17754866 219.44757134 
    47466 0.85545379 0.51718857 -0.02673585 267.71204628 
    47467 -0.11440752 0.13838082 -0.98374879 270.68842562 
    47468 Axis 0.49202156 0.86998319 0.03231156 
    47469 Axis point 46.61766015 0.00000000 128.06969832 
    47470 Rotation angle (degrees) 170.34040927 
    47471 Shift along axis 349.62428175 
    47472  
    47473 
    47474 > show #!34 models
    47475 
    47476 > show #!4 models
    47477 
    47478 > select add #40
    47479 
    47480 39508 atoms, 40254 bonds, 5000 residues, 3 models selected 
    47481 
    47482 > select subtract #40
    47483 
    47484 2 models selected 
    47485 
    47486 > show #39 models
    47487 
    47488 > show #38 models
    47489 
    47490 > hide #38 models
    47491 
    47492 > show #!37 models
    47493 
    47494 > show #!36 models
    47495 
    47496 > show #!35 models
    47497 
    47498 > show #!32 models
    47499 
    47500 > show #!31 models
    47501 
    47502 > show #!30 models
    47503 
    47504 > show #!29 models
    47505 
    47506 > show #28 models
    47507 
    47508 > hide #28 models
    47509 
    47510 > show #!27 models
    47511 
    47512 > show #!26 models
    47513 
    47514 > show #!25.6 models
    47515 
    47516 > hide #!25.6 models
    47517 
    47518 > show #24 models
    47519 
    47520 > show #!9 models
    47521 
    47522 > show #!3 models
    47523 
    47524 > show #!2 models
    47525 
    47526 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    47527 > dataset/Chimera sessions/20240521_leaf_fitting_v28.cxs"
    47528 
    47529 > hide #!2 models
    47530 
    47531 > hide #!34 models
    47532 
    47533 > select #4/A:625
    47534 
    47535 7 atoms, 7 bonds, 1 residue, 1 model selected 
    47536 
    47537 > select clear
    47538 
    47539 > select #4/A:661
    47540 
    47541 11 atoms, 10 bonds, 1 residue, 1 model selected 
    47542 
    47543 > show #!34 models
    47544 
    47545 > show #!2 models
    47546 
    47547 > hide #24 models
    47548 
    47549 > show #24 models
    47550 
    47551 > volume #34 level 0.006418
    47552 
    47553 > hide #!34 models
    47554 
    47555 > select add #24
    47556 
    47557 1945 atoms, 1960 bonds, 255 residues, 2 models selected 
    47558 
    47559 > show sel atoms
    47560 
    47561 [Repeated 1 time(s)]
    47562 
    47563 > style sel sphere
    47564 
    47565 Changed 1945 atom styles 
    47566 
    47567 > ui tool show "Color Actions"
    47568 
    47569 > style sel stick
    47570 
    47571 Changed 1945 atom styles 
    47572 
    47573 > hide sel cartoons
    47574 
    47575 > hide sel atoms
    47576 
    47577 > show sel cartoons
    47578 
    47579 > show sel atoms
    47580 
    47581 > hide sel atoms
    47582 
    47583 > select subtract #24
    47584 
    47585 11 atoms, 10 bonds, 1 residue, 1 model selected 
    47586 
    47587 > select #24/A:83
    47588 
    47589 8 atoms, 7 bonds, 1 residue, 1 model selected 
    47590 
    47591 > show sel atoms
    47592 
    47593 [Repeated 1 time(s)]
    47594 
    47595 > color sel red
    47596 
    47597 > select #24/A:159
    47598 
    47599 9 atoms, 8 bonds, 1 residue, 1 model selected 
    47600 
    47601 > show sel atoms
    47602 
    47603 > color sel red
    47604 
    47605 > select clear
    47606 
    47607 > select #24/A:156
    47608 
    47609 8 atoms, 7 bonds, 1 residue, 1 model selected 
    47610 
    47611 > select #24/A:154
    47612 
    47613 9 atoms, 8 bonds, 1 residue, 1 model selected 
    47614 
    47615 > show sel atoms
    47616 
    47617 > color sel red
    47618 
    47619 > select #24/A:154
    47620 
    47621 9 atoms, 8 bonds, 1 residue, 1 model selected 
    47622 
    47623 > color sel red
    47624 
    47625 > select clear
    47626 
    47627 > select #24/A:262
    47628 
    47629 8 atoms, 7 bonds, 1 residue, 1 model selected 
    47630 
    47631 > show sel atoms
    47632 
    47633 > color sel yellow
    47634 
    47635 > select #24/A:258
    47636 
    47637 8 atoms, 7 bonds, 1 residue, 1 model selected 
    47638 
    47639 > show sel atoms
    47640 
    47641 > color sel yellow
    47642 
    47643 > select #24/A:259
    47644 
    47645 9 atoms, 8 bonds, 1 residue, 1 model selected 
    47646 
    47647 > color sel yellow
    47648 
    47649 > show sel atoms
    47650 
    47651 > select #24/A:75
    47652 
    47653 9 atoms, 8 bonds, 1 residue, 1 model selected 
    47654 
    47655 > show sel atoms
    47656 
    47657 > color sel lime
    47658 
    47659 > select #24/A:73
    47660 
    47661 8 atoms, 7 bonds, 1 residue, 1 model selected 
    47662 
    47663 > show sel atoms
    47664 
    47665 > color sel lime
    47666 
    47667 > select clear
    47668 
    47669 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    47670 > dataset/Chimera sessions/20240521_leaf_fitting_v29_mutations_labeled.cxs"
    47671 
    47672 > show #!34 models
    47673 
    47674 > hide #!2 models
    47675 
    47676 > hide #!25 models
    47677 
    47678 > show #!25 models
    47679 
    47680 > hide #!34 models
    47681 
    47682 > show #!34 models
    47683 
    47684 > hide #!34 models
    47685 
    47686 > select add #24
    47687 
    47688 1934 atoms, 1950 bonds, 254 residues, 1 model selected 
    47689 
    47690 > surface sel
    47691 
    47692 > ui tool show "Surface Color"
    47693 
    47694 > color electrostatic #24.1 map #2 palette -10,#ff0000:0,#ffffff:10,#0000ff
    47695 
    47696 Map values for surface "3kn1_Golph3_xtal.cif_A SES surface": minimum -0.2153,
    47697 mean -0.04639, maximum 0.1938 
    47698 
    47699 > color single #24.1
    47700 
    47701 > ui tool show "Surface Color"
    47702 
    47703 > color electrostatic #24.1 map #2 palette -10,#ff0000:0,#ffffff:10,#0000ff
    47704 
    47705 Map values for surface "3kn1_Golph3_xtal.cif_A SES surface": minimum -0.2153,
    47706 mean -0.04639, maximum 0.1938 
    47707 
    47708 > color single #24.1
    47709 
    47710 > surface hidePatches (#!24 & sel)
    47711 
    47712 > select subtract #24
    47713 
    47714 1 model selected 
    47715 
    47716 > show #!34 models
    47717 
    47718 > volume #34 level 0.005871
    47719 
    47720 > hide #!34 models
    47721 
    47722 > show #!34 models
    47723 
    47724 > hide #!34 models
    47725 
    47726 > show #!34 models
    47727 
    47728 > hide #!34 models
    47729 
    47730 > show #!34 models
    47731 
    47732 > hide #!34 models
    47733 
    47734 > show #11 models
    47735 
    47736 > show #!34 models
    47737 
    47738 > hide #!34 models
    47739 
    47740 > show #!34 models
    47741 
    47742 > hide #!34 models
    47743 
    47744 > show #!34 models
    47745 
    47746 > hide #!34 models
    47747 
    47748 > show #!34 models
    47749 
    47750 > hide #!34 models
    47751 
    47752 > show #!34 models
    47753 
    47754 > hide #!34 models
    47755 
    47756 > show #!34 models
    47757 
    47758 > show #!2 models
    47759 
    47760 > hide #!2 models
    47761 
    47762 > hide #!34 models
    47763 
    47764 > show #!34 models
    47765 
    47766 > hide #!34 models
    47767 
    47768 > select #24/A:183
    47769 
    47770 9 atoms, 8 bonds, 1 residue, 1 model selected 
    47771 
    47772 > select #24/A:184
    47773 
    47774 9 atoms, 8 bonds, 1 residue, 1 model selected 
    47775 
    47776 > show sel atoms
    47777 
    47778 > hide sel atoms
    47779 
    47780 > select #24/A:183
    47781 
    47782 9 atoms, 8 bonds, 1 residue, 1 model selected 
    47783 
    47784 > show sel atoms
    47785 
    47786 > show #!34 models
    47787 
    47788 Drag select of 1 residues, 34 relion_locres_filtered_20240326_GT.mrc 
    47789 
    47790 > select add #34
    47791 
    47792 5 atoms, 1 residue, 4 models selected 
    47793 
    47794 > select subtract #34
    47795 
    47796 5 atoms, 1 residue, 1 model selected 
    47797 
    47798 > hide #!34 models
    47799 
    47800 > select #30/A:73
    47801 
    47802 8 atoms, 7 bonds, 1 residue, 1 model selected 
    47803 
    47804 > select #30/A:74
    47805 
    47806 8 atoms, 7 bonds, 1 residue, 1 model selected 
    47807 
    47808 > select #30/A:73
    47809 
    47810 8 atoms, 7 bonds, 1 residue, 1 model selected 
    47811 
    47812 > select #24/A:183
    47813 
    47814 9 atoms, 8 bonds, 1 residue, 1 model selected 
    47815 
    47816 > hide sel atoms
    47817 
    47818 > select #24/A:184
    47819 
    47820 9 atoms, 8 bonds, 1 residue, 1 model selected 
    47821 
    47822 > select #30/A:73
    47823 
    47824 8 atoms, 7 bonds, 1 residue, 1 model selected 
    47825 
    47826 > select #30/A:74
    47827 
    47828 8 atoms, 7 bonds, 1 residue, 1 model selected 
    47829 
    47830 > select #30/A:96
    47831 
    47832 8 atoms, 7 bonds, 1 residue, 1 model selected 
    47833 
    47834 > select #24/A:183
    47835 
    47836 9 atoms, 8 bonds, 1 residue, 1 model selected 
    47837 
    47838 > select #11/A:183
    47839 
    47840 9 atoms, 8 bonds, 1 residue, 1 model selected 
    47841 
    47842 > select #24/A:184
    47843 
    47844 9 atoms, 8 bonds, 1 residue, 1 model selected 
    47845 
    47846 > select #11/A:182
    47847 
    47848 7 atoms, 6 bonds, 1 residue, 1 model selected 
    47849 
    47850 > select #11/A:183
    47851 
    47852 9 atoms, 8 bonds, 1 residue, 1 model selected 
    47853 
    47854 > select #11/A:182
    47855 
    47856 7 atoms, 6 bonds, 1 residue, 1 model selected 
    47857 
    47858 > select #11/A:183
    47859 
    47860 9 atoms, 8 bonds, 1 residue, 1 model selected 
    47861 
    47862 > select #24/A:183
    47863 
    47864 9 atoms, 8 bonds, 1 residue, 1 model selected 
    47865 
    47866 > select #11/A:183
    47867 
    47868 9 atoms, 8 bonds, 1 residue, 1 model selected 
    47869 
    47870 > select #11/A:184
    47871 
    47872 9 atoms, 8 bonds, 1 residue, 1 model selected 
    47873 
    47874 > select #30/A:97
    47875 
    47876 12 atoms, 12 bonds, 1 residue, 1 model selected 
    47877 
    47878 > select #3/A:95
    47879 
    47880 12 atoms, 12 bonds, 1 residue, 1 model selected 
    47881 
    47882 > select #30/A:94
    47883 
    47884 10 atoms, 10 bonds, 1 residue, 1 model selected 
    47885 
    47886 > select #30/A:95
    47887 
    47888 8 atoms, 7 bonds, 1 residue, 1 model selected 
    47889 
    47890 > select #30/A:96
    47891 
    47892 8 atoms, 7 bonds, 1 residue, 1 model selected 
    47893 
    47894 > select #3/A:94
    47895 
    47896 8 atoms, 7 bonds, 1 residue, 1 model selected 
    47897 
    47898 > select #30/A:96
    47899 
    47900 8 atoms, 7 bonds, 1 residue, 1 model selected 
    47901 
    47902 > select #3/A:94
    47903 
    47904 8 atoms, 7 bonds, 1 residue, 1 model selected 
    47905 Drag select of 2 residues 
    47906 
    47907 > select #30/A:97
    47908 
    47909 12 atoms, 12 bonds, 1 residue, 1 model selected 
    47910 
    47911 > select clear
    47912 
    47913 [Repeated 2 time(s)]
    47914 
    47915 > select #3/A:321
    47916 
    47917 11 atoms, 10 bonds, 1 residue, 1 model selected 
    47918 
    47919 > select clear
    47920 
    47921 > select #3/A:320
    47922 
    47923 9 atoms, 8 bonds, 1 residue, 1 model selected 
    47924 
    47925 > show #!34 models
    47926 
    47927 > hide #!34 models
    47928 
    47929 > hide #!30 models
    47930 
    47931 > show #!34 models
    47932 
    47933 > show #!2 models
    47934 
    47935 > hide #!2 models
    47936 
    47937 > show #!2 models
    47938 
    47939 > hide #!25 models
    47940 
    47941 > show #!25 models
    47942 
    47943 > hide #!34 models
    47944 
    47945 > volume #2 level 0.1204
    47946 
    47947 > show #!34 models
    47948 
    47949 > fitmap #2 inMap #34
    47950 
    47951 Fit map emdb 3720 in map relion_locres_filtered_20240326_GT.mrc using 87829
    47952 points 
    47953 correlation = 0.6926, correlation about mean = 0.2583, overlap = 150.4 
    47954 steps = 48, shift = 0.101, angle = 0.106 degrees 
    47955  
    47956 Position of emdb 3720 (#2) relative to relion_locres_filtered_20240326_GT.mrc
    47957 (#34) coordinates: 
    47958 Matrix rotation and translation 
    47959 -0.53796983 0.84155370 -0.04874257 218.00766540 
    47960 -0.84283572 -0.53799705 0.01367977 404.60666989 
    47961 -0.01471110 0.04844128 0.99871769 145.34757683 
    47962 Axis 0.02062885 -0.02019562 -0.99958321 
    47963 Axis point 220.50645392 140.27828970 0.00000000 
    47964 Rotation angle (degrees) 122.59005790 
    47965 Shift along axis -148.96103027 
    47966  
    47967 
    47968 > fitmap #2 inMap #34
    47969 
    47970 Fit map emdb 3720 in map relion_locres_filtered_20240326_GT.mrc using 87829
    47971 points 
    47972 correlation = 0.6927, correlation about mean = 0.2585, overlap = 150.4 
    47973 steps = 44, shift = 0.0342, angle = 0.00493 degrees 
    47974  
    47975 Position of emdb 3720 (#2) relative to relion_locres_filtered_20240326_GT.mrc
    47976 (#34) coordinates: 
    47977 Matrix rotation and translation 
    47978 -0.53792909 0.84158316 -0.04868350 217.96400146 
    47979 -0.84286283 -0.53795369 0.01371436 404.61662806 
    47980 -0.01464769 0.04841086 0.99872010 145.33292296 
    47981 Axis 0.02058960 -0.02019753 -0.99958398 
    47982 Axis point 220.49090624 140.29322173 0.00000000 
    47983 Rotation angle (degrees) 122.58711660 
    47984 Shift along axis -148.95692510 
    47985  
    47986 
    47987 > fitmap #2 inMap #34
    47988 
    47989 Fit map emdb 3720 in map relion_locres_filtered_20240326_GT.mrc using 87829
    47990 points 
    47991 correlation = 0.6927, correlation about mean = 0.2585, overlap = 150.4 
    47992 steps = 44, shift = 0.00301, angle = 0.00163 degrees 
    47993  
    47994 Position of emdb 3720 (#2) relative to relion_locres_filtered_20240326_GT.mrc
    47995 (#34) coordinates: 
    47996 Matrix rotation and translation 
    47997 -0.53795122 0.84156844 -0.04869343 217.96879525 
    47998 -0.84284862 -0.53797589 0.01371664 404.62013148 
    47999 -0.01465240 0.04842007 0.99871959 145.33197166 
    48000 Axis 0.02059406 -0.02020097 -0.99958382 
    48001 Axis point 220.49098314 140.29514343 0.00000000 
    48002 Rotation angle (degrees) 122.58864151 
    48003 Shift along axis -148.95634306 
    48004  
    48005 
    48006 > hide #!2 models
    48007 
    48008 > select add #3
    48009 
    48010 6692 atoms, 6847 bonds, 1 pseudobond, 833 residues, 2 models selected 
    48011 
    48012 > select subtract #3
    48013 
    48014 Nothing selected 
    48015 
    48016 > hide #!34 models
    48017 
    48018 > show #!34 models
    48019 
    48020 > hide #!34 models
    48021 
    48022 > show #!30 models
    48023 
    48024 > show #!34 models
    48025 
    48026 > hide #!30 models
    48027 
    48028 > hide #!34 models
    48029 
    48030 > show #!2 models
    48031 
    48032 > show #!34 models
    48033 
    48034 > hide #!34 models
    48035 
    48036 > hide #!2 models
    48037 
    48038 > select #11/A:90
    48039 
    48040 11 atoms, 10 bonds, 1 residue, 1 model selected 
    48041 
    48042 > select add #11
    48043 
    48044 2367 atoms, 2398 bonds, 298 residues, 1 model selected 
    48045 
    48046 > select subtract #11
    48047 
    48048 Nothing selected 
    48049 
    48050 > hide #11 models
    48051 
    48052 > select #24/A:90
    48053 
    48054 11 atoms, 10 bonds, 1 residue, 1 model selected 
    48055 
    48056 > color sel cyan
    48057 
    48058 > select #24/A:171
    48059 
    48060 11 atoms, 10 bonds, 1 residue, 1 model selected 
    48061 
    48062 > show sel atoms
    48063 
    48064 > color sel cyan
    48065 
    48066 > select #24/A:90
    48067 
    48068 11 atoms, 10 bonds, 1 residue, 1 model selected 
    48069 
    48070 > show sel atoms
    48071 
    48072 > select #24/A:174
    48073 
    48074 11 atoms, 10 bonds, 1 residue, 1 model selected 
    48075 
    48076 > show sel atoms
    48077 
    48078 > color sel cyan
    48079 
    48080 > select #24/A:81
    48081 
    48082 14 atoms, 15 bonds, 1 residue, 1 model selected 
    48083 
    48084 > show sel atoms
    48085 
    48086 > color sel cyan
    48087 
    48088 > show #!34 models
    48089 
    48090 > select clear
    48091 
    48092 > volume #34 level 0.008609
    48093 
    48094 > volume #34 level 0.006418
    48095 
    48096 > volume #34 level 0.005871
    48097 
    48098 > hide #!34 models
    48099 
    48100 > show #!34 models
    48101 
    48102 > hide #!34 models
    48103 
    48104 > select #40/H:10
    48105 
    48106 4 atoms, 3 bonds, 1 residue, 1 model selected 
    48107 
    48108 > select #40/H:11
    48109 
    48110 8 atoms, 7 bonds, 1 residue, 1 model selected 
    48111 
    48112 > select #40/H:12
    48113 
    48114 7 atoms, 6 bonds, 1 residue, 1 model selected 
    48115 
    48116 > select #40/H:13
    48117 
    48118 9 atoms, 8 bonds, 1 residue, 1 model selected 
    48119 
    48120 > select #40/H:14
    48121 
    48122 11 atoms, 10 bonds, 1 residue, 1 model selected 
    48123 
    48124 > select #40/B:848
    48125 
    48126 9 atoms, 8 bonds, 1 residue, 1 model selected 
    48127 
    48128 > select #40/H:14
    48129 
    48130 11 atoms, 10 bonds, 1 residue, 1 model selected 
    48131 Drag select of 3 residues 
    48132 
    48133 > show sel atoms
    48134 
    48135 > hide sel atoms
    48136 
    48137 > show sel atoms
    48138 
    48139 > style sel stick
    48140 
    48141 Changed 29 atom styles 
    48142 
    48143 > select clear
    48144 
    48145 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    48146 > dataset/Chimera
    48147 > sessions/20240521_leaf_fitting_v30_mutations_interactions_labeled.cxs"
    48148 
    48149 > show #!34 models
    48150 
    48151 > hide #!34 models
    48152 
    48153 > show #!34 models
    48154 
    48155 > hide #!34 models
    48156 
    48157 > select #24/A:184
    48158 
    48159 9 atoms, 8 bonds, 1 residue, 1 model selected 
    48160 
    48161 > show sel atoms
    48162 
    48163 > show #!34 models
    48164 
    48165 > hide #!34 models
    48166 
    48167 > show #!34 models
    48168 
    48169 > hide #!34 models
    48170 
    48171 > select #24/A:183
    48172 
    48173 9 atoms, 8 bonds, 1 residue, 1 model selected 
    48174 
    48175 > show sel atoms
    48176 
    48177 > select #24/A:182
    48178 
    48179 7 atoms, 6 bonds, 1 residue, 1 model selected 
    48180 
    48181 > show sel atoms
    48182 
    48183 > show #!34 models
    48184 
    48185 > select #34
    48186 
    48187 2 models selected 
    48188 
    48189 > hide #!34 models
    48190 
    48191 > select #3/A:13
    48192 
    48193 9 atoms, 8 bonds, 1 residue, 1 model selected 
    48194 
    48195 > show #!34 models
    48196 
    48197 > hide #!34 models
    48198 
    48199 > show #!34 models
    48200 
    48201 > hide #!34 models
    48202 
    48203 > show #!34 models
    48204 
    48205 > hide #!34 models
    48206 
    48207 > select #24/A:184
    48208 
    48209 9 atoms, 8 bonds, 1 residue, 1 model selected 
    48210 
    48211 > show sel atoms
    48212 
    48213 [Repeated 1 time(s)]
    48214 
    48215 > select #24/A:185
    48216 
    48217 4 atoms, 3 bonds, 1 residue, 1 model selected 
    48218 
    48219 > show sel atoms
    48220 
    48221 [Repeated 2 time(s)]
    48222 
    48223 > select #3/A:269
    48224 
    48225 9 atoms, 8 bonds, 1 residue, 1 model selected 
    48226 
    48227 > show sel atoms
    48228 
    48229 > show #!34 models
    48230 
    48231 > hide #!34 models
    48232 
    48233 > select clear
    48234 
    48235 > select #3/A:293
    48236 
    48237 11 atoms, 10 bonds, 1 residue, 1 model selected 
    48238 
    48239 > show sel atoms
    48240 
    48241 > show #!34 models
    48242 
    48243 > select #3/A:269@CD
    48244 
    48245 1 atom, 1 residue, 1 model selected 
    48246 
    48247 > hide sel atoms
    48248 
    48249 > hide #!34 models
    48250 
    48251 > select #3/A:269
    48252 
    48253 9 atoms, 8 bonds, 1 residue, 1 model selected 
    48254 
    48255 > hide sel atoms
    48256 
    48257 > select #3/A:293
    48258 
    48259 11 atoms, 10 bonds, 1 residue, 1 model selected 
    48260 
    48261 > select #24/A:185
    48262 
    48263 4 atoms, 3 bonds, 1 residue, 1 model selected 
    48264 
    48265 > show sel atoms
    48266 
    48267 [Repeated 1 time(s)]
    48268 
    48269 > select #24/A:184
    48270 
    48271 9 atoms, 8 bonds, 1 residue, 1 model selected 
    48272 
    48273 > select #24/A:183
    48274 
    48275 9 atoms, 8 bonds, 1 residue, 1 model selected 
    48276 
    48277 > show #!34 models
    48278 
    48279 > show #!2 models
    48280 
    48281 > hide #!2 models
    48282 
    48283 > hide #!34 models
    48284 
    48285 > select #3/A:290
    48286 
    48287 8 atoms, 7 bonds, 1 residue, 1 model selected 
    48288 
    48289 > select #3/A:291
    48290 
    48291 10 atoms, 10 bonds, 1 residue, 1 model selected 
    48292 
    48293 > select #3/A:290
    48294 
    48295 8 atoms, 7 bonds, 1 residue, 1 model selected 
    48296 
    48297 > select #3/A:291
    48298 
    48299 10 atoms, 10 bonds, 1 residue, 1 model selected 
    48300 
    48301 > select #3/A:290
    48302 
    48303 8 atoms, 7 bonds, 1 residue, 1 model selected 
    48304 
    48305 > show sel atoms
    48306 
    48307 > select #3/A:291
    48308 
    48309 10 atoms, 10 bonds, 1 residue, 1 model selected 
    48310 
    48311 > show sel atoms
    48312 
    48313 > select #3/A:290
    48314 
    48315 8 atoms, 7 bonds, 1 residue, 1 model selected 
    48316 
    48317 > show #!30 models
    48318 
    48319 > select #30/A:298
    48320 
    48321 8 atoms, 7 bonds, 1 residue, 1 model selected 
    48322 
    48323 > show sel atoms
    48324 
    48325 > select clear
    48326 
    48327 > select #30/A:297
    48328 
    48329 5 atoms, 4 bonds, 1 residue, 1 model selected 
    48330 
    48331 > show sel atoms
    48332 
    48333 > show #!34 models
    48334 
    48335 > select add #30
    48336 
    48337 2737 atoms, 2622 bonds, 1 pseudobond, 505 residues, 2 models selected 
    48338 
    48339 > select subtract #30
    48340 
    48341 Nothing selected 
    48342 
    48343 > hide #!34 models
    48344 
    48345 > hide #!30 models
    48346 
    48347 > select #3/A:291@CE1
    48348 
    48349 1 atom, 1 residue, 1 model selected 
    48350 
    48351 > show #!34 models
    48352 
    48353 > volume #34 level 0.007331
    48354 
    48355 > hide #!34 models
    48356 
    48357 > show #!34 models
    48358 
    48359 > hide #!34 models
    48360 
    48361 > hide #39 models
    48362 
    48363 > show #39 models
    48364 
    48365 > hide #26.3 models
    48366 
    48367 > show #!34 models
    48368 
    48369 > hide #!34 models
    48370 
    48371 > show #!34 models
    48372 
    48373 > hide #!34 models
    48374 
    48375 > show #!34 models
    48376 
    48377 > hide #!34 models
    48378 
    48379 > select #31.1/A:107
    48380 
    48381 9 atoms, 8 bonds, 1 residue, 1 model selected 
    48382 
    48383 > show sel atoms
    48384 
    48385 > select #31.1/A:107
    48386 
    48387 9 atoms, 8 bonds, 1 residue, 1 model selected 
    48388 
    48389 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    48390 > dataset/Chimera
    48391 > sessions/20240521_leaf_fitting_v31_mutations_interactions_labeled.cxs"
    48392 
    48393 ——— End of log from Tue May 21 23:56:29 2024 ———
    48394 
    48395 opened ChimeraX session 
    48396 
    48397 > show #!34 models
    48398 
    48399 > hide #!40 models
    48400 
    48401 > show #!40 models
    48402 
    48403 > hide #!40 models
    48404 
    48405 > show #!40 models
    48406 
    48407 > hide #!40 models
    48408 
    48409 > show #!40 models
    48410 
    48411 > hide #!40 models
    48412 
    48413 > show #!40 models
    48414 
    48415 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    48416 > dataset/Chimera sessions/20240522_leaf_fitting_v32_labelled.cxs"
    48417 
    48418 ——— End of log from Mon Jun 3 13:56:09 2024 ———
    48419 
    48420 opened ChimeraX session 
    48421 
    48422 > hide #!4 models
    48423 
    48424 > show #!4 models
    48425 
    48426 > hide #!4 models
    48427 
    48428 > show #!4 models
    48429 
    48430 > hide #!9 models
    48431 
    48432 > show #!9 models
    48433 
    48434 > hide #!24 models
    48435 
    48436 > show #!24 models
    48437 
    48438 > hide #!25 models
    48439 
    48440 > show #!25 models
    48441 
    48442 > hide #!25 models
    48443 
    48444 > show #!25 models
    48445 
    48446 > hide #!25 models
    48447 
    48448 > hide #!26.1 models
    48449 
    48450 > show #!26.1 models
    48451 
    48452 > hide #!26.1 models
    48453 
    48454 > show #!26.1 models
    48455 
    48456 > hide #!26.1 models
    48457 
    48458 > show #!26.1 models
    48459 
    48460 > hide #!26.2 models
    48461 
    48462 > show #!26.2 models
    48463 
    48464 > hide #!26.2 models
    48465 
    48466 > show #!26.2 models
    48467 
    48468 > hide #!26.2 models
    48469 
    48470 > show #!26.2 models
    48471 
    48472 > hide #!9 models
    48473 
    48474 > show #!9 models
    48475 
    48476 > hide #!9 models
    48477 
    48478 > show #!9 models
    48479 
    48480 > hide #!9 models
    48481 
    48482 > show #!9 models
    48483 
    48484 > hide #!24 models
    48485 
    48486 > show #!24 models
    48487 
    48488 > show #26.3 models
    48489 
    48490 > hide #31.1 models
    48491 
    48492 > hide #26.3 models
    48493 
    48494 > show #26.3 models
    48495 
    48496 > ui tool show "Fit in Map"
    48497 
    48498 The cached device pixel ratio value was stale on window expose. Please file a
    48499 QTBUG which explains how to reproduce. 
    48500 
    48501 [Repeated 1 time(s)]
    48502 
    48503 > fitmap #26.3 inMap #34
    48504 
    48505 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) to map
    48506 relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms 
    48507 average map value = 0.01093, steps = 60 
    48508 shifted from previous position = 0.0301 
    48509 rotated from previous position = 0.115 degrees 
    48510 atoms outside contour = 396, contour level = 0.0073311 
    48511  
    48512 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) relative to
    48513 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    48514 Matrix rotation and translation 
    48515 -0.25015197 0.19166485 -0.94904613 329.61451129 
    48516 0.70993523 0.70281569 -0.04518920 309.45965141 
    48517 0.65834334 -0.68506545 -0.31188036 214.46027109 
    48518 Axis -0.35429978 -0.89001229 0.28696654 
    48519 Axis point -6.56266263 0.00000000 232.51267062 
    48520 Rotation angle (degrees) 115.44270597 
    48521 Shift along axis -330.66231699 
    48522  
    48523 
    48524 > fitmap #26.3 inMap #34
    48525 
    48526 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) to map
    48527 relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms 
    48528 average map value = 0.01093, steps = 40 
    48529 shifted from previous position = 0.0136 
    48530 rotated from previous position = 0.056 degrees 
    48531 atoms outside contour = 396, contour level = 0.0073311 
    48532  
    48533 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) relative to
    48534 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    48535 Matrix rotation and translation 
    48536 -0.25044191 0.19256066 -0.94878830 329.65987834 
    48537 0.71001093 0.70276508 -0.04478510 309.44631735 
    48538 0.65815144 -0.68486613 -0.31272200 214.49855120 
    48539 Axis -0.35452366 -0.89004067 0.28660178 
    48540 Axis point -6.47767297 0.00000000 232.37808000 
    48541 Rotation angle (degrees) 115.48021628 
    48542 Shift along axis -330.81636809 
    48543  
    48544 
    48545 > fitmap #26.3 inMap #34
    48546 
    48547 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) to map
    48548 relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms 
    48549 average map value = 0.01093, steps = 48 
    48550 shifted from previous position = 0.0249 
    48551 rotated from previous position = 0.0425 degrees 
    48552 atoms outside contour = 393, contour level = 0.0073311 
    48553  
    48554 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#26.3) relative to
    48555 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    48556 Matrix rotation and translation 
    48557 -0.25077607 0.19313625 -0.94858302 329.70656717 
    48558 0.71021693 0.70256140 -0.04471441 309.44271618 
    48559 0.65780184 -0.68491303 -0.31335423 214.51452240 
    48560 Axis -0.35469842 -0.89000844 0.28648562 
    48561 Axis point -6.41176068 0.00000000 232.30159949 
    48562 Rotation angle (degrees) 115.51735370 
    48563 Shift along axis -330.89769971 
    48564  
    48565 
    48566 > hide #!27 models
    48567 
    48568 > show #!27 models
    48569 
    48570 > hide #!29 models
    48571 
    48572 > show #!29 models
    48573 
    48574 > hide #!29 models
    48575 
    48576 > show #!29 models
    48577 
    48578 > hide #!29 models
    48579 
    48580 > show #!29 models
    48581 
    48582 > hide #!29 models
    48583 
    48584 > show #!29 models
    48585 
    48586 > show #28 models
    48587 
    48588 > hide #28 models
    48589 
    48590 > hide #39 models
    48591 
    48592 > show #28 models
    48593 
    48594 > fitmap #28 inMap #34
    48595 
    48596 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) to map
    48597 relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms 
    48598 average map value = 0.007773, steps = 64 
    48599 shifted from previous position = 0.00753 
    48600 rotated from previous position = 0.0352 degrees 
    48601 atoms outside contour = 593, contour level = 0.0073311 
    48602  
    48603 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) relative
    48604 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    48605 Matrix rotation and translation 
    48606 -0.56977216 -0.71673503 0.40205793 245.64427258 
    48607 -0.48588719 -0.10076147 -0.86819396 216.24614809 
    48608 0.66277698 -0.69002755 -0.29084129 214.86790721 
    48609 Axis 0.45547881 -0.66652294 0.59015780 
    48610 Axis point 184.92723986 0.00000000 218.17465974 
    48611 Rotation angle (degrees) 168.72130754 
    48612 Shift along axis 94.55871550 
    48613  
    48614 
    48615 > fitmap #28 inMap #34
    48616 
    48617 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) to map
    48618 relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms 
    48619 average map value = 0.007773, steps = 44 
    48620 shifted from previous position = 0.00467 
    48621 rotated from previous position = 0.0259 degrees 
    48622 atoms outside contour = 592, contour level = 0.0073311 
    48623  
    48624 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) relative
    48625 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    48626 Matrix rotation and translation 
    48627 -0.56974234 -0.71665127 0.40224944 245.64234236 
    48628 -0.48572977 -0.10117318 -0.86823416 216.22185965 
    48629 0.66291798 -0.69005429 -0.29045622 214.85271487 
    48630 Axis 0.45549464 -0.66636665 0.59032204 
    48631 Axis point 184.94036291 0.00000000 218.20662049 
    48632 Rotation angle (degrees) 168.72084168 
    48633 Shift along axis 94.63802762 
    48634  
    48635 
    48636 > fitmap #28 inMap #34
    48637 
    48638 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) to map
    48639 relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms 
    48640 average map value = 0.007773, steps = 76 
    48641 shifted from previous position = 0.00297 
    48642 rotated from previous position = 0.0032 degrees 
    48643 atoms outside contour = 592, contour level = 0.0073311 
    48644  
    48645 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) relative
    48646 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    48647 Matrix rotation and translation 
    48648 -0.56977869 -0.71664593 0.40220745 245.64658784 
    48649 -0.48569764 -0.10113646 -0.86825642 216.22256444 
    48650 0.66291027 -0.69006522 -0.29044784 214.85034197 
    48651 Axis 0.45547257 -0.66637964 0.59032441 
    48652 Axis point 184.93644775 0.00000000 218.20641252 
    48653 Rotation angle (degrees) 168.71956173 
    48654 Shift along axis 94.63037015 
    48655  
    48656 
    48657 > fitmap #28 inMap #34
    48658 
    48659 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) to map
    48660 relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms 
    48661 average map value = 0.007773, steps = 80 
    48662 shifted from previous position = 0.003 
    48663 rotated from previous position = 0.0126 degrees 
    48664 atoms outside contour = 592, contour level = 0.0073311 
    48665  
    48666 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) relative
    48667 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    48668 Matrix rotation and translation 
    48669 -0.56975507 -0.71676535 0.40202808 245.64499671 
    48670 -0.48563061 -0.10100146 -0.86830962 216.23091799 
    48671 0.66297968 -0.68996096 -0.29053710 214.85692881 
    48672 Axis 0.45547043 -0.66642348 0.59027657 
    48673 Axis point 184.92158374 0.00000000 218.21261815 
    48674 Rotation angle (degrees) 168.70940821 
    48675 Shift along axis 94.60768454 
    48676  
    48677 
    48678 > fitmap #28 inMap #34
    48679 
    48680 Fit molecule copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) to map
    48681 relion_locres_filtered_20240326_GT.mrc (#34) using 1128 atoms 
    48682 average map value = 0.007772, steps = 28 
    48683 shifted from previous position = 0.0343 
    48684 rotated from previous position = 0.0983 degrees 
    48685 atoms outside contour = 594, contour level = 0.0073311 
    48686  
    48687 Position of copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif C (#28) relative
    48688 to relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    48689 Matrix rotation and translation 
    48690 -0.56976373 -0.71640192 0.40266310 245.66998860 
    48691 -0.48493373 -0.10249149 -0.86852447 216.13776532 
    48692 0.66348214 -0.69011867 -0.28901152 214.79452675 
    48693 Axis 0.45545972 -0.66585597 0.59092492 
    48694 Axis point 184.97144152 0.00000000 218.33697098 
    48695 Rotation angle (degrees) 168.70547428 
    48696 Shift along axis 94.90360191 
    48697  
    48698 
    48699 > hide #32.1 models
    48700 
    48701 > show #32.1 models
    48702 
    48703 > hide #32.2 models
    48704 
    48705 > show #32.2 models
    48706 
    48707 > hide #32.1 models
    48708 
    48709 > show #32.1 models
    48710 
    48711 > hide #32.2 models
    48712 
    48713 > show #32.2 models
    48714 
    48715 > hide #!35 models
    48716 
    48717 > show #!35 models
    48718 
    48719 > hide #!36 models
    48720 
    48721 > show #!36 models
    48722 
    48723 > hide #!37 models
    48724 
    48725 > show #!37 models
    48726 
    48727 > show #38 models
    48728 
    48729 > hide #38 models
    48730 
    48731 > hide #!3 models
    48732 
    48733 > show #!3 models
    48734 
    48735 > hide #!4 models
    48736 
    48737 > show #!4 models
    48738 
    48739 > hide #!4 models
    48740 
    48741 > show #!4 models
    48742 
    48743 > hide #!9 models
    48744 
    48745 > show #!9 models
    48746 
    48747 > show #8 models
    48748 
    48749 > close #1
    48750 
    48751 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/Structure
    48752 > files/alphafold/AF-Q5XJY5-CopD.pdb"
    48753 
    48754 AF-Q5XJY5-CopD.pdb title: 
    48755 Alphafold monomer V2.0 prediction for coatomer subunit δ (Q5XJY5) [more
    48756 info...] 
    48757  
    48758 Chain information for AF-Q5XJY5-CopD.pdb #1 
    48759 --- 
    48760 Chain | Description | UniProt 
    48761 A | coatomer subunit δ | COPD_MOUSE 1-511 
    48762  
    48763 
    48764 > color #1 #b55c00ff
    48765 
    48766 > select add #1
    48767 
    48768 4014 atoms, 4084 bonds, 511 residues, 2 models selected 
    48769 
    48770 > view orient
    48771 
    48772 > ui mousemode right "translate selected models"
    48773 
    48774 > view matrix models
    48775 > #24,0.22845,0.95367,-0.19576,582.24,0.012859,-0.20401,-0.97888,618.31,-0.97347,0.22111,-0.058869,274.42,#1,1,0,0,322.45,0,1,0,284.52,0,0,1,0
    48776 
    48777 > view matrix models
    48778 > #24,0.22845,0.95367,-0.19576,714.03,0.012859,-0.20401,-0.97888,717.94,-0.97347,0.22111,-0.058869,470.12,#1,1,0,0,454.24,0,1,0,384.15,0,0,1,195.7
    48779 
    48780 > view matrix models
    48781 > #24,0.22845,0.95367,-0.19576,714.38,0.012859,-0.20401,-0.97888,741.01,-0.97347,0.22111,-0.058869,482.72,#1,1,0,0,454.59,0,1,0,407.22,0,0,1,208.3
    48782 
    48783 > ui tool show Matchmaker
    48784 
    48785 The cached device pixel ratio value was stale on window expose. Please file a
    48786 QTBUG which explains how to reproduce. 
    48787 
    48788 > matchmaker #1 to #8
    48789 
    48790 Parameters 
    48791 --- 
    48792 Chain pairing | bb 
    48793 Alignment algorithm | Needleman-Wunsch 
    48794 Similarity matrix | BLOSUM-62 
    48795 SS fraction | 0.3 
    48796 Gap open (HH/SS/other) | 18/18/6 
    48797 Gap extend | 1 
    48798 SS matrix |  |  | H | S | O 
    48799 ---|---|---|--- 
    48800 H | 6 | -9 | -6 
    48801 S |  | 6 | -6 
    48802 O |  |  | 4 
    48803 Iteration cutoff | 2 
    48804  
    48805 Matchmaker CopD_Q5XJY5, chain A (#8) with AF-Q5XJY5-CopD.pdb, chain A (#1),
    48806 sequence alignment score = 2127.5 
    48807 RMSD between 179 pruned atom pairs is 0.000 angstroms; (across all 179 pairs:
    48808 0.000) 
    48809  
    48810 
    48811 > ui mousemode right select
    48812 
    48813 > select subtract #1
    48814 
    48815 1 bond, 1 model selected 
    48816 
    48817 > hide #1 models
    48818 
    48819 > show #1 models
    48820 
    48821 > hide #1 models
    48822 
    48823 > show #1 models
    48824 
    48825 > hide #8 models
    48826 
    48827 > show #8 models
    48828 
    48829 > hide #8 models
    48830 
    48831 > show #8 models
    48832 
    48833 > hide #8 models
    48834 
    48835 > show #8 models
    48836 
    48837 > hide #8 models
    48838 
    48839 > hide #!3 models
    48840 
    48841 > hide #!4 models
    48842 
    48843 > hide #!9 models
    48844 
    48845 > hide #!34 models
    48846 
    48847 > show #!34 models
    48848 
    48849 > show #!3 models
    48850 
    48851 > show #!4 models
    48852 
    48853 > show #!9 models
    48854 
    48855 > hide #1 models
    48856 
    48857 > show #8 models
    48858 
    48859 > show #25.1 models
    48860 
    48861 > hide #25.1 models
    48862 
    48863 > show #25.1 models
    48864 
    48865 > hide #25.1 models
    48866 
    48867 > show #!30 models
    48868 
    48869 > hide #!3 models
    48870 
    48871 > select add #24
    48872 
    48873 1934 atoms, 1950 bonds, 254 residues, 1 model selected 
    48874 
    48875 > select subtract #24
    48876 
    48877 1 model selected 
    48878 
    48879 > hide #!24 models
    48880 
    48881 > show #!24 models
    48882 
    48883 > hide #!24 models
    48884 
    48885 > show #!24 models
    48886 
    48887 > hide #!24 models
    48888 
    48889 > show #!24 models
    48890 
    48891 > hide #!24 models
    48892 
    48893 > show #!24 models
    48894 
    48895 > select add #24
    48896 
    48897 1934 atoms, 1950 bonds, 254 residues, 1 model selected 
    48898 
    48899 > view orient
    48900 
    48901 Drag select of 7 atoms, 38 residues, 4 bonds 
    48902 Drag select of 95 atoms, 239 residues, 82 bonds 
    48903 
    48904 > ui mousemode right "translate selected models"
    48905 
    48906 > view matrix models
    48907 > #24,0.22845,0.95367,-0.19576,311.99,0.012859,-0.20401,-0.97888,299.49,-0.97347,0.22111,-0.058869,482.72
    48908 
    48909 > ui tool show Matchmaker
    48910 
    48911 The cached device pixel ratio value was stale on window expose. Please file a
    48912 QTBUG which explains how to reproduce. 
    48913 
    48914 > matchmaker #!24 to #11
    48915 
    48916 Parameters 
    48917 --- 
    48918 Chain pairing | bb 
    48919 Alignment algorithm | Needleman-Wunsch 
    48920 Similarity matrix | BLOSUM-62 
    48921 SS fraction | 0.3 
    48922 Gap open (HH/SS/other) | 18/18/6 
    48923 Gap extend | 1 
    48924 SS matrix |  |  | H | S | O 
    48925 ---|---|---|--- 
    48926 H | 6 | -9 | -6 
    48927 S |  | 6 | -6 
    48928 O |  |  | 4 
    48929 Iteration cutoff | 2 
    48930  
    48931 Matchmaker Golph3_ Q9CRA5.pdb, chain A (#11) with 3kn1_Golph3_xtal.cif, chain
    48932 A (#24), sequence alignment score = 1235.4 
    48933 RMSD between 224 pruned atom pairs is 0.677 angstroms; (across all 239 pairs:
    48934 1.230) 
    48935  
    48936 
    48937 > select add #24
    48938 
    48939 1934 atoms, 1950 bonds, 254 residues, 2 models selected 
    48940 
    48941 > select subtract #24
    48942 
    48943 1 model selected 
    48944 
    48945 > fitmap #24 inMap #34
    48946 
    48947 Fit molecule 3kn1_Golph3_xtal.cif (#24) to map
    48948 relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms 
    48949 average map value = 0.008452, steps = 44 
    48950 shifted from previous position = 0.00199 
    48951 rotated from previous position = 0.00237 degrees 
    48952 atoms outside contour = 870, contour level = 0.0073311 
    48953  
    48954 Position of 3kn1_Golph3_xtal.cif (#24) relative to
    48955 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    48956 Matrix rotation and translation 
    48957 0.23411882 0.94979669 -0.20754429 197.36124212 
    48958 0.00020207 -0.21352478 -0.97693763 258.11108339 
    48959 -0.97220797 0.22867754 -0.05018209 197.38531977 
    48960 Axis 0.70313521 0.44596483 -0.55381969 
    48961 Axis point 0.00000000 -45.19312295 254.34939772 
    48962 Rotation angle (degrees) 120.98368854 
    48963 Shift along axis 144.56422808 
    48964  
    48965 
    48966 > fitmap #24 inMap #34
    48967 
    48968 Fit molecule 3kn1_Golph3_xtal.cif (#24) to map
    48969 relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms 
    48970 average map value = 0.008452, steps = 44 
    48971 shifted from previous position = 0.00409 
    48972 rotated from previous position = 0.0477 degrees 
    48973 atoms outside contour = 871, contour level = 0.0073311 
    48974  
    48975 Position of 3kn1_Golph3_xtal.cif (#24) relative to
    48976 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    48977 Matrix rotation and translation 
    48978 0.23367514 0.95001198 -0.20705835 197.35573015 
    48979 -0.00012509 -0.21292467 -0.97706861 258.07355956 
    48980 -0.97231472 0.22834255 -0.04963637 197.41034193 
    48981 Axis 0.70284348 0.44620082 -0.55399988 
    48982 Axis point 0.00000000 -45.37463902 254.47002005 
    48983 Rotation angle (degrees) 120.96022808 
    48984 Shift along axis 144.49751519 
    48985  
    48986 
    48987 > hide #!24 models
    48988 
    48989 > show #11 models
    48990 
    48991 > fitmap #24 inMap #34
    48992 
    48993 Fit molecule 3kn1_Golph3_xtal.cif (#24) to map
    48994 relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms 
    48995 average map value = 0.008452, steps = 44 
    48996 shifted from previous position = 0.0328 
    48997 rotated from previous position = 0.0458 degrees 
    48998 atoms outside contour = 868, contour level = 0.0073311 
    48999  
    49000 Position of 3kn1_Golph3_xtal.cif (#24) relative to
    49001 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49002 Matrix rotation and translation 
    49003 0.23415440 0.94986066 -0.20721111 197.39669232 
    49004 0.00041715 -0.21323457 -0.97700094 258.09433832 
    49005 -0.97219933 0.22868264 -0.05032604 197.39158985 
    49006 Axis 0.70313034 0.44612570 -0.55369630 
    49007 Axis point 0.00000000 -45.26326865 254.32962611 
    49008 Rotation angle (degrees) 120.97761199 
    49009 Shift along axis 144.64312646 
    49010  
    49011 
    49012 > fitmap #24 inMap #34
    49013 
    49014 Fit molecule 3kn1_Golph3_xtal.cif (#24) to map
    49015 relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms 
    49016 average map value = 0.008452, steps = 36 
    49017 shifted from previous position = 0.0198 
    49018 rotated from previous position = 0.0176 degrees 
    49019 atoms outside contour = 868, contour level = 0.0073311 
    49020  
    49021 Position of 3kn1_Golph3_xtal.cif (#24) relative to
    49022 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49023 Matrix rotation and translation 
    49024 0.23408490 0.94982276 -0.20746319 197.37337718 
    49025 0.00020395 -0.21344001 -0.97695615 258.10559803 
    49026 -0.97221614 0.22864837 -0.05015680 197.38961043 
    49027 Axis 0.70311025 0.44600500 -0.55381903 
    49028 Axis point 0.00000000 -45.22107900 254.35958148 
    49029 Rotation angle (degrees) 120.98114440 
    49030 Shift along axis 144.57350888 
    49031  
    49032 
    49033 > fitmap #24 inMap #34
    49034 
    49035 Fit molecule 3kn1_Golph3_xtal.cif (#24) to map
    49036 relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms 
    49037 average map value = 0.008452, steps = 40 
    49038 shifted from previous position = 0.0111 
    49039 rotated from previous position = 0.0115 degrees 
    49040 atoms outside contour = 870, contour level = 0.0073311 
    49041  
    49042 Position of 3kn1_Golph3_xtal.cif (#24) relative to
    49043 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49044 Matrix rotation and translation 
    49045 0.23420658 0.94976056 -0.20761057 197.36474823 
    49046 0.00016749 -0.21358949 -0.97692349 258.11341680 
    49047 -0.97218684 0.22876713 -0.05018314 197.37895020 
    49048 Axis 0.70317380 0.44591041 -0.55381451 
    49049 Axis point 0.00000000 -45.17503829 254.34330682 
    49050 Rotation angle (degrees) 120.98295329 
    49051 Shift along axis 144.56585129 
    49052  
    49053 
    49054 > hide #11 models
    49055 
    49056 > show #!24 models
    49057 
    49058 > fitmap #24 inMap #34
    49059 
    49060 Fit molecule 3kn1_Golph3_xtal.cif (#24) to map
    49061 relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms 
    49062 average map value = 0.008452, steps = 44 
    49063 shifted from previous position = 0.00201 
    49064 rotated from previous position = 0.0533 degrees 
    49065 atoms outside contour = 871, contour level = 0.0073311 
    49066  
    49067 Position of 3kn1_Golph3_xtal.cif (#24) relative to
    49068 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49069 Matrix rotation and translation 
    49070 0.23369916 0.95001506 -0.20701710 197.35800882 
    49071 -0.00011063 -0.21288690 -0.97707684 258.07126543 
    49072 -0.97230895 0.22836494 -0.04964639 197.41036117 
    49073 Axis 0.70284861 0.44621343 -0.55398322 
    49074 Axis point 0.00000000 -45.38179119 254.46707755 
    49075 Rotation angle (degrees) 120.95849874 
    49076 Shift along axis 144.50563895 
    49077  
    49078 
    49079 > fitmap #24 inMap #34
    49080 
    49081 Fit molecule 3kn1_Golph3_xtal.cif (#24) to map
    49082 relion_locres_filtered_20240326_GT.mrc (#34) using 1934 atoms 
    49083 average map value = 0.008452, steps = 40 
    49084 shifted from previous position = 0.00765 
    49085 rotated from previous position = 0.0189 degrees 
    49086 atoms outside contour = 870, contour level = 0.0073311 
    49087  
    49088 Position of 3kn1_Golph3_xtal.cif (#24) relative to
    49089 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49090 Matrix rotation and translation 
    49091 0.23388251 0.94996011 -0.20706223 197.36980604 
    49092 0.00013398 -0.21300044 -0.97705209 258.08065054 
    49093 -0.97226486 0.22848765 -0.04994435 197.39999665 
    49094 Axis 0.70296183 0.44619702 -0.55385276 
    49095 Axis point 0.00000000 -45.33519202 254.40462393 
    49096 Rotation angle (degrees) 120.96612115 
    49097 Shift along axis 144.56772497 
    49098  
    49099 
    49100 > show #!3 models
    49101 
    49102 > hide #!3 models
    49103 
    49104 > hide #!30 models
    49105 
    49106 > show #!30 models
    49107 
    49108 > fitmap #30 inMap #34
    49109 
    49110 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    49111 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    49112 average map value = 0.009304, steps = 28 
    49113 shifted from previous position = 0.0444 
    49114 rotated from previous position = 0.043 degrees 
    49115 atoms outside contour = 1169, contour level = 0.0073311 
    49116  
    49117 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    49118 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49119 Matrix rotation and translation 
    49120 0.79065852 -0.52006743 0.32309283 236.67837552 
    49121 -0.42071527 -0.07811133 0.90382370 306.89589708 
    49122 -0.44481206 -0.85054600 -0.28055970 224.01788859 
    49123 Axis -0.91485641 0.40044166 0.05180947 
    49124 Axis point 0.00000000 298.40681607 -19.94524805 
    49125 Rotation angle (degrees) 106.49945673 
    49126 Shift along axis -82.02658130 
    49127  
    49128 
    49129 > fitmap #30 inMap #34
    49130 
    49131 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    49132 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    49133 average map value = 0.009304, steps = 44 
    49134 shifted from previous position = 0.00604 
    49135 rotated from previous position = 0.0155 degrees 
    49136 atoms outside contour = 1170, contour level = 0.0073311 
    49137  
    49138 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    49139 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49140 Matrix rotation and translation 
    49141 0.79062785 -0.52015485 0.32302715 236.68246447 
    49142 -0.42057503 -0.07792376 0.90390516 306.90046176 
    49143 -0.44499917 -0.85050974 -0.28037283 224.02093681 
    49144 Axis -0.91483143 0.40048372 0.05192543 
    49145 Axis point 0.00000000 298.44102839 -19.95437080 
    49146 Rotation angle (degrees) 106.48918577 
    49147 Shift along axis -81.98353244 
    49148  
    49149 
    49150 > fitmap #30 inMap #34
    49151 
    49152 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    49153 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    49154 average map value = 0.009304, steps = 40 
    49155 shifted from previous position = 0.0346 
    49156 rotated from previous position = 0.0549 degrees 
    49157 atoms outside contour = 1171, contour level = 0.0073311 
    49158  
    49159 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    49160 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49161 Matrix rotation and translation 
    49162 0.79089557 -0.51967170 0.32314940 236.68458374 
    49163 -0.42088694 -0.07860174 0.90370126 306.91730947 
    49164 -0.44422786 -0.85074267 -0.28088879 224.04967298 
    49165 Axis -0.91497749 0.40020254 0.05151822 
    49166 Axis point 0.00000000 298.34590809 -19.93277897 
    49167 Rotation angle (degrees) 106.51686013 
    49168 Shift along axis -82.18933752 
    49169  
    49170 
    49171 > fitmap #30 inMap #34
    49172 
    49173 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    49174 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    49175 average map value = 0.009304, steps = 28 
    49176 shifted from previous position = 0.0248 
    49177 rotated from previous position = 0.0349 degrees 
    49178 atoms outside contour = 1171, contour level = 0.0073311 
    49179  
    49180 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    49181 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49182 Matrix rotation and translation 
    49183 0.79075543 -0.51989715 0.32312971 236.68339373 
    49184 -0.42069040 -0.07810589 0.90383575 306.90424046 
    49185 -0.44466330 -0.85065059 -0.28047840 224.03220543 
    49186 Axis -0.91489129 0.40037196 0.05173217 
    49187 Axis point 0.00000000 298.41110765 -19.96559274 
    49188 Rotation angle (degrees) 106.49396960 
    49189 Shift along axis -82.07405001 
    49190  
    49191 
    49192 > fitmap #30 inMap #34
    49193 
    49194 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    49195 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    49196 average map value = 0.009304, steps = 36 
    49197 shifted from previous position = 0.0193 
    49198 rotated from previous position = 0.00966 degrees 
    49199 atoms outside contour = 1169, contour level = 0.0073311 
    49200  
    49201 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    49202 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49203 Matrix rotation and translation 
    49204 0.79077253 -0.51990541 0.32307457 236.68582329 
    49205 -0.42071618 -0.07826985 0.90380957 306.91632187 
    49206 -0.44460848 -0.85063048 -0.28062626 224.04469682 
    49207 Axis -0.91490879 0.40033284 0.05172539 
    49208 Axis point 0.00000000 298.40008943 -19.94137991 
    49209 Rotation angle (degrees) 106.50277513 
    49210 Shift along axis -82.08845700 
    49211  
    49212 
    49213 > fitmap #30 inMap #34
    49214 
    49215 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    49216 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    49217 average map value = 0.009304, steps = 44 
    49218 shifted from previous position = 0.00798 
    49219 rotated from previous position = 0.0359 degrees 
    49220 atoms outside contour = 1173, contour level = 0.0073311 
    49221  
    49222 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    49223 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49224 Matrix rotation and translation 
    49225 0.79095030 -0.51957998 0.32316292 236.68460133 
    49226 -0.42092107 -0.07870379 0.90367648 306.91900688 
    49227 -0.44409806 -0.85078926 -0.28095295 224.05143643 
    49228 Axis -0.91500463 0.40014880 0.05145348 
    49229 Axis point 0.00000000 298.32918230 -19.93282662 
    49230 Rotation angle (degrees) 106.52019122 
    49231 Shift along axis -82.22601095 
    49232  
    49233 
    49234 > fitmap #30 inMap #34
    49235 
    49236 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    49237 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    49238 average map value = 0.009304, steps = 28 
    49239 shifted from previous position = 0.0246 
    49240 rotated from previous position = 0.0351 degrees 
    49241 atoms outside contour = 1170, contour level = 0.0073311 
    49242  
    49243 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    49244 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49245 Matrix rotation and translation 
    49246 0.79079859 -0.51980952 0.32316506 236.68350793 
    49247 -0.42074402 -0.07819437 0.90380314 306.90476290 
    49248 -0.44453579 -0.85069602 -0.28054274 224.03459739 
    49249 Axis -0.91491347 0.40033068 0.05165939 
    49250 Axis point 0.00000000 298.39624004 -19.96672359 
    49251 Rotation angle (degrees) 106.49724595 
    49252 Shift along axis -82.10804416 
    49253  
    49254 
    49255 > fitmap #30 inMap #34
    49256 
    49257 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    49258 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    49259 average map value = 0.009304, steps = 28 
    49260 shifted from previous position = 0.013 
    49261 rotated from previous position = 0.0168 degrees 
    49262 atoms outside contour = 1169, contour level = 0.0073311 
    49263  
    49264 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    49265 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49266 Matrix rotation and translation 
    49267 0.79073436 -0.51999363 0.32302601 236.68295257 
    49268 -0.42075309 -0.07838298 0.90378258 306.91348854 
    49269 -0.44464144 -0.85056613 -0.28076905 224.03795392 
    49270 Axis -0.91490274 0.40034291 0.05175450 
    49271 Axis point 0.00000000 298.38336978 -19.91695214 
    49272 Rotation angle (degrees) 106.51156264 
    49273 Shift along axis -82.07627243 
    49274  
    49275 
    49276 > ui tool show Matchmaker
    49277 
    49278 The cached device pixel ratio value was stale on window expose. Please file a
    49279 QTBUG which explains how to reproduce. 
    49280 
    49281 > matchmaker #!30 to #3
    49282 
    49283 Parameters 
    49284 --- 
    49285 Chain pairing | bb 
    49286 Alignment algorithm | Needleman-Wunsch 
    49287 Similarity matrix | BLOSUM-62 
    49288 SS fraction | 0.3 
    49289 Gap open (HH/SS/other) | 18/18/6 
    49290 Gap extend | 1 
    49291 SS matrix |  |  | H | S | O 
    49292 ---|---|---|--- 
    49293 H | 6 | -9 | -6 
    49294 S |  | 6 | -6 
    49295 O |  |  | 4 
    49296 Iteration cutoff | 2 
    49297  
    49298 Matchmaker CopA_F8WHL2.pdb, chain A (#3) with 4j87_yeast_alphaCOPI.cif, chain
    49299 A (#30), sequence alignment score = 1380.7 
    49300 RMSD between 297 pruned atom pairs is 0.540 angstroms; (across all 309 pairs:
    49301 2.943) 
    49302  
    49303 
    49304 > fitmap #30 inMap #34
    49305 
    49306 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    49307 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    49308 average map value = 0.009304, steps = 48 
    49309 shifted from previous position = 0.484 
    49310 rotated from previous position = 2.47 degrees 
    49311 atoms outside contour = 1170, contour level = 0.0073311 
    49312  
    49313 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    49314 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49315 Matrix rotation and translation 
    49316 0.79086817 -0.51973337 0.32311726 236.68392710 
    49317 -0.42085373 -0.07856391 0.90372001 306.91790359 
    49318 -0.44430810 -0.85070849 -0.28086542 224.04826702 
    49319 Axis -0.91496466 0.40022553 0.05156744 
    49320 Axis point 0.00000000 298.35339518 -19.92897462 
    49321 Rotation angle (degrees) 106.51585001 
    49322 Shift along axis -82.16745292 
    49323  
    49324 
    49325 > fitmap #30 inMap #34
    49326 
    49327 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    49328 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    49329 average map value = 0.009304, steps = 48 
    49330 shifted from previous position = 0.484 
    49331 rotated from previous position = 2.47 degrees 
    49332 atoms outside contour = 1170, contour level = 0.0073311 
    49333  
    49334 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    49335 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49336 Matrix rotation and translation 
    49337 0.79086817 -0.51973337 0.32311726 236.68392710 
    49338 -0.42085373 -0.07856391 0.90372001 306.91790359 
    49339 -0.44430810 -0.85070849 -0.28086542 224.04826702 
    49340 Axis -0.91496466 0.40022553 0.05156744 
    49341 Axis point 0.00000000 298.35339518 -19.92897462 
    49342 Rotation angle (degrees) 106.51585001 
    49343 Shift along axis -82.16745292 
    49344  
    49345 
    49346 > fitmap #30 inMap #34
    49347 
    49348 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    49349 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    49350 average map value = 0.009304, steps = 48 
    49351 shifted from previous position = 0.484 
    49352 rotated from previous position = 2.47 degrees 
    49353 atoms outside contour = 1170, contour level = 0.0073311 
    49354  
    49355 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    49356 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49357 Matrix rotation and translation 
    49358 0.79086817 -0.51973337 0.32311726 236.68392710 
    49359 -0.42085373 -0.07856391 0.90372001 306.91790359 
    49360 -0.44430810 -0.85070849 -0.28086542 224.04826702 
    49361 Axis -0.91496466 0.40022553 0.05156744 
    49362 Axis point 0.00000000 298.35339518 -19.92897462 
    49363 Rotation angle (degrees) 106.51585001 
    49364 Shift along axis -82.16745292 
    49365  
    49366 
    49367 > fitmap #30 inMap #34
    49368 
    49369 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    49370 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    49371 average map value = 0.009304, steps = 48 
    49372 shifted from previous position = 0.484 
    49373 rotated from previous position = 2.47 degrees 
    49374 atoms outside contour = 1170, contour level = 0.0073311 
    49375  
    49376 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    49377 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49378 Matrix rotation and translation 
    49379 0.79086817 -0.51973337 0.32311726 236.68392710 
    49380 -0.42085373 -0.07856391 0.90372001 306.91790359 
    49381 -0.44430810 -0.85070849 -0.28086542 224.04826702 
    49382 Axis -0.91496466 0.40022553 0.05156744 
    49383 Axis point 0.00000000 298.35339518 -19.92897462 
    49384 Rotation angle (degrees) 106.51585001 
    49385 Shift along axis -82.16745292 
    49386  
    49387 
    49388 > fitmap #30 inMap #34
    49389 
    49390 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    49391 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    49392 average map value = 0.009304, steps = 28 
    49393 shifted from previous position = 0.0215 
    49394 rotated from previous position = 0.0203 degrees 
    49395 atoms outside contour = 1170, contour level = 0.0073311 
    49396  
    49397 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    49398 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49399 Matrix rotation and translation 
    49400 0.79080859 -0.51979573 0.32316277 236.68283087 
    49401 -0.42075840 -0.07823684 0.90379277 306.90558108 
    49402 -0.44450439 -0.85070053 -0.28057879 224.03446005 
    49403 Axis -0.91492010 0.40031735 0.05164525 
    49404 Axis point 0.00000000 298.38989078 -19.96369190 
    49405 Rotation angle (degrees) 106.49929346 
    49406 Shift along axis -82.11593248 
    49407  
    49408 
    49409 > hide #!37 models
    49410 
    49411 > show #!37 models
    49412 
    49413 > hide #!36 models
    49414 
    49415 > show #!36 models
    49416 
    49417 > hide #!35 models
    49418 
    49419 > show #!35 models
    49420 
    49421 > show #!3 models
    49422 
    49423 > show #7 models
    49424 
    49425 > hide #7 models
    49426 
    49427 > show #7 models
    49428 
    49429 > hide #7 models
    49430 
    49431 > show #7 models
    49432 
    49433 > hide #7 models
    49434 
    49435 > hide #!26.1 models
    49436 
    49437 > show #!26.1 models
    49438 
    49439 > hide #!26.1 models
    49440 
    49441 > show #!26.1 models
    49442 
    49443 > show #6 models
    49444 
    49445 > hide #6 models
    49446 
    49447 > show #6 models
    49448 
    49449 > hide #6 models
    49450 
    49451 > show #6 models
    49452 
    49453 > ui mousemode right select
    49454 
    49455 > hide #6 models
    49456 
    49457 > show #10 models
    49458 
    49459 > hide #10 models
    49460 
    49461 > show #10 models
    49462 
    49463 > hide #10 models
    49464 
    49465 > show #10 models
    49466 
    49467 > hide #10 models
    49468 
    49469 > show #7 models
    49470 
    49471 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    49472 > dataset/Chimera sessions/20240708_leaf_fitting_v33_labelled.cxs"
    49473 
    49474 > hide #!40 models
    49475 
    49476 > hide #!37 models
    49477 
    49478 > hide #!36 models
    49479 
    49480 > hide #!34 models
    49481 
    49482 > show #!34 models
    49483 
    49484 > hide #!35 models
    49485 
    49486 > hide #!34 models
    49487 
    49488 > hide #32.2 models
    49489 
    49490 > hide #32.1 models
    49491 
    49492 > hide #!32 models
    49493 
    49494 > show #!32 models
    49495 
    49496 > show #32.1 models
    49497 
    49498 > show #32.2 models
    49499 
    49500 > hide #!32 models
    49501 
    49502 > hide #!31 models
    49503 
    49504 > show #!31 models
    49505 
    49506 > hide #!31 models
    49507 
    49508 > hide #!30 models
    49509 
    49510 > hide #!29 models
    49511 
    49512 > hide #28 models
    49513 
    49514 > hide #27.2 models
    49515 
    49516 > show #27.2 models
    49517 
    49518 > hide #!27 models
    49519 
    49520 > hide #!26 models
    49521 
    49522 > show #!26 models
    49523 
    49524 > hide #!26 models
    49525 
    49526 > hide #!26.1 models
    49527 
    49528 > hide #!26.2 models
    49529 
    49530 > hide #26.3 models
    49531 
    49532 > hide #27.1 models
    49533 
    49534 > hide #27.2 models
    49535 
    49536 > hide #!24 models
    49537 
    49538 > hide #!25 models
    49539 
    49540 > hide #!9 models
    49541 
    49542 > hide #8 models
    49543 
    49544 > hide #7 models
    49545 
    49546 > hide #!4 models
    49547 
    49548 > show #27.2 models
    49549 
    49550 > show #!30 models
    49551 
    49552 > hide #!30 models
    49553 
    49554 > hide #!3 models
    49555 
    49556 > show #!3 models
    49557 
    49558 > hide #!3 models
    49559 
    49560 > show #!3 models
    49561 
    49562 > hide #!3 models
    49563 
    49564 > show #!34 models
    49565 
    49566 > fitmap #27.2 inMap #34
    49567 
    49568 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    49569 relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms 
    49570 average map value = 0.009081, steps = 48 
    49571 shifted from previous position = 0.00273 
    49572 rotated from previous position = 0.0242 degrees 
    49573 atoms outside contour = 718, contour level = 0.0073311 
    49574  
    49575 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    49576 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49577 Matrix rotation and translation 
    49578 0.98956810 0.01433697 -0.14335073 -45.82491729 
    49579 0.02422267 0.96431254 0.26365620 -113.39654732 
    49580 0.14201494 -0.26437811 0.95390564 -31.26296098 
    49581 Axis -0.87962783 -0.47537740 0.01646812 
    49582 Axis point 0.00000000 -165.70831636 238.71953494 
    49583 Rotation angle (degrees) 17.46639833 
    49584 Shift along axis 93.70018662 
    49585  
    49586 
    49587 > fitmap #27.2 inMap #34
    49588 
    49589 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    49590 relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms 
    49591 average map value = 0.009081, steps = 48 
    49592 shifted from previous position = 0.000499 
    49593 rotated from previous position = 0.00154 degrees 
    49594 atoms outside contour = 718, contour level = 0.0073311 
    49595  
    49596 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    49597 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49598 Matrix rotation and translation 
    49599 0.98956841 0.01434068 -0.14334821 -45.82626387 
    49600 0.02422224 0.96430547 0.26368210 -113.40009857 
    49601 0.14201285 -0.26440369 0.95389886 -31.25752997 
    49602 Axis -0.87965054 -0.47533566 0.01646006 
    49603 Axis point 0.00000000 -165.67596109 238.72518972 
    49604 Rotation angle (degrees) 17.46769067 
    49605 Shift along axis 93.69970795 
    49606  
    49607 
    49608 > fitmap #27.2 inMap #34
    49609 
    49610 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    49611 relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms 
    49612 average map value = 0.009081, steps = 48 
    49613 shifted from previous position = 0.00016 
    49614 rotated from previous position = 0.00118 degrees 
    49615 atoms outside contour = 718, contour level = 0.0073311 
    49616  
    49617 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    49618 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49619 Matrix rotation and translation 
    49620 0.98956880 0.01435531 -0.14334403 -45.82936380 
    49621 0.02420915 0.96430157 0.26369756 -113.40235253 
    49622 0.14201233 -0.26441712 0.95389522 -31.25478351 
    49623 Axis -0.87966536 -0.47530985 0.01641326 
    49624 Axis point 0.00000000 -165.64407090 238.72526660 
    49625 Rotation angle (degrees) 17.46837305 
    49626 Shift along axis 93.70276671 
    49627  
    49628 
    49629 > fitmap #27.2 inMap #34
    49630 
    49631 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    49632 relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms 
    49633 average map value = 0.009081, steps = 48 
    49634 shifted from previous position = 0.000232 
    49635 rotated from previous position = 0.0016 degrees 
    49636 atoms outside contour = 718, contour level = 0.0073311 
    49637  
    49638 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    49639 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49640 Matrix rotation and translation 
    49641 0.98956798 0.01433731 -0.14335150 -45.82514046 
    49642 0.02422547 0.96430711 0.26367580 -113.39913149 
    49643 0.14201527 -0.26439788 0.95390011 -31.25869132 
    49644 Axis -0.87964184 -0.47535137 0.01647125 
    49645 Axis point 0.00000000 -165.68626076 238.72206913 
    49646 Rotation angle (degrees) 17.46745538 
    49647 Shift along axis 93.69927359 
    49648  
    49649 
    49650 > hide #27.2 models
    49651 
    49652 > show #27.2 models
    49653 
    49654 > show #25.1 models
    49655 
    49656 > hide #!34 models
    49657 
    49658 > fitmap #25.1 inMap #34
    49659 
    49660 Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map
    49661 relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms 
    49662 average map value = 0.01111, steps = 44 
    49663 shifted from previous position = 0.0255 
    49664 rotated from previous position = 0.0165 degrees 
    49665 atoms outside contour = 1139, contour level = 0.0073311 
    49666  
    49667 Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to
    49668 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49669 Matrix rotation and translation 
    49670 -0.50785617 0.84619728 -0.16134517 226.54486618 
    49671 -0.85933572 -0.51073828 0.02623942 400.55682789 
    49672 -0.06020143 0.15197552 0.98654914 146.95470423 
    49673 Axis 0.07339469 -0.05903963 -0.99555389 
    49674 Axis point 229.78625014 128.44128536 0.00000000 
    49675 Rotation angle (degrees) 121.06583536 
    49676 Shift along axis -153.32286545 
    49677  
    49678 
    49679 > fitmap #25.1 inMap #34
    49680 
    49681 Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map
    49682 relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms 
    49683 average map value = 0.01111, steps = 40 
    49684 shifted from previous position = 0.0282 
    49685 rotated from previous position = 0.0262 degrees 
    49686 atoms outside contour = 1141, contour level = 0.0073311 
    49687  
    49688 Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to
    49689 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49690 Matrix rotation and translation 
    49691 -0.50777141 0.84631853 -0.16097555 226.47710304 
    49692 -0.85941279 -0.51059812 0.02644248 400.51128673 
    49693 -0.05981505 0.15177118 0.98660410 146.91059784 
    49694 Axis 0.07314968 -0.05904360 -0.99557168 
    49695 Axis point 229.73837123 128.43746238 0.00000000 
    49696 Rotation angle (degrees) 121.05647504 
    49697 Shift along axis -153.34093340 
    49698  
    49699 
    49700 > fitmap #25.1 inMap #34
    49701 
    49702 Fit molecule 5nzr_COPI_coat_leaf_2017.cif A (#25.1) to map
    49703 relion_locres_filtered_20240326_GT.mrc (#34) using 3251 atoms 
    49704 average map value = 0.01111, steps = 44 
    49705 shifted from previous position = 0.0343 
    49706 rotated from previous position = 0.0212 degrees 
    49707 atoms outside contour = 1138, contour level = 0.0073311 
    49708  
    49709 Position of 5nzr_COPI_coat_leaf_2017.cif A (#25.1) relative to
    49710 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49711 Matrix rotation and translation 
    49712 -0.50786213 0.84621309 -0.16124345 226.53567475 
    49713 -0.85933666 -0.51073604 0.02625237 400.56152237 
    49714 -0.06013775 0.15189499 0.98656543 146.95013683 
    49715 Axis 0.07333980 -0.05901717 -0.99555926 
    49716 Axis point 229.78005640 128.45021909 0.00000000 
    49717 Rotation angle (degrees) 121.06541504 
    49718 Shift along axis -153.32349619 
    49719  
    49720 
    49721 > hide #25.1 models
    49722 
    49723 > fitmap #27.2 inMap #34
    49724 
    49725 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    49726 relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms 
    49727 average map value = 0.009081, steps = 48 
    49728 shifted from previous position = 0.000571 
    49729 rotated from previous position = 0.00345 degrees 
    49730 atoms outside contour = 718, contour level = 0.0073311 
    49731  
    49732 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    49733 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49734 Matrix rotation and translation 
    49735 0.98956980 0.01437573 -0.14333510 -45.83431014 
    49736 0.02419063 0.96429507 0.26372303 -113.40605851 
    49737 0.14200855 -0.26443971 0.95388952 -31.25014824 
    49738 Axis -0.87969326 -0.47526049 0.01634743 
    49739 Axis point 0.00000000 -165.59514953 238.72926707 
    49740 Rotation angle (degrees) 17.46944224 
    49741 Shift along axis 93.70669324 
    49742  
    49743 
    49744 > show #!34 models
    49745 
    49746 > hide #!34 models
    49747 
    49748 > show #!3 models
    49749 
    49750 > select clear
    49751 
    49752 [Repeated 3 time(s)]
    49753 
    49754 The cached device pixel ratio value was stale on window expose. Please file a
    49755 QTBUG which explains how to reproduce. 
    49756 
    49757 > select clear
    49758 
    49759 > ui mousemode right select
    49760 
    49761 Drag select of 1 pseudobonds 
    49762 
    49763 > delete sel
    49764 
    49765 > select clear
    49766 
    49767 The cached device pixel ratio value was stale on window expose. Please file a
    49768 QTBUG which explains how to reproduce. 
    49769 
    49770 > select clear
    49771 
    49772 [Repeated 1 time(s)]
    49773 
    49774 The cached device pixel ratio value was stale on window expose. Please file a
    49775 QTBUG which explains how to reproduce. 
    49776 
    49777 > hide #!3 models
    49778 
    49779 > show #!3 models
    49780 
    49781 > hide #27.2 models
    49782 
    49783 Drag select of 179 residues 
    49784 
    49785 > delete sel
    49786 
    49787 Drag select of 1 pseudobonds 
    49788 
    49789 > delete sel
    49790 
    49791 > undo
    49792 
    49793 [Repeated 1 time(s)]Undo failed, probably because structures have been
    49794 modified. 
    49795 
    49796 > close #1
    49797 
    49798 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/Structure
    49799 > files/alphafold/CopA-F8WHL2.pdb"
    49800 
    49801 CopA-F8WHL2.pdb title: 
    49802 Alphafold monomer V2.0 prediction for coatomer subunit α (F8WHL2) [more
    49803 info...] 
    49804  
    49805 Chain information for CopA-F8WHL2.pdb #1 
    49806 --- 
    49807 Chain | Description | UniProt 
    49808 A | coatomer subunit α | F8WHL2_MOUSE 1-1233 
    49809  
    49810 
    49811 > color #1 #0024ffff
    49812 
    49813 > ui tool show Matchmaker
    49814 
    49815 The cached device pixel ratio value was stale on window expose. Please file a
    49816 QTBUG which explains how to reproduce. 
    49817 
    49818 > matchmaker #1 to #3
    49819 
    49820 Parameters 
    49821 --- 
    49822 Chain pairing | bb 
    49823 Alignment algorithm | Needleman-Wunsch 
    49824 Similarity matrix | BLOSUM-62 
    49825 SS fraction | 0.3 
    49826 Gap open (HH/SS/other) | 18/18/6 
    49827 Gap extend | 1 
    49828 SS matrix |  |  | H | S | O 
    49829 ---|---|---|--- 
    49830 H | 6 | -9 | -6 
    49831 S |  | 6 | -6 
    49832 O |  |  | 4 
    49833 Iteration cutoff | 2 
    49834  
    49835 Matchmaker CopA_F8WHL2.pdb, chain A (#3) with CopA-F8WHL2.pdb, chain A (#1),
    49836 sequence alignment score = 5565.8 
    49837 RMSD between 598 pruned atom pairs is 0.000 angstroms; (across all 654 pairs:
    49838 1.682) 
    49839  
    49840 
    49841 > hide #1 models
    49842 
    49843 > show #1 models
    49844 
    49845 > hide #1 models
    49846 
    49847 > show #1 models
    49848 
    49849 > hide #1 models
    49850 
    49851 > show #1 models
    49852 
    49853 > hide #!3 models
    49854 
    49855 > show #!3 models
    49856 
    49857 > hide #32.2 models
    49858 
    49859 > hide #32.1 models
    49860 
    49861 > hide #1 models
    49862 
    49863 > show #1 models
    49864 
    49865 > hide #!3 models
    49866 
    49867 > show #!3 models
    49868 
    49869 > hide #!3 models
    49870 
    49871 > show #!3 models
    49872 
    49873 > show #!34 models
    49874 
    49875 > hide #!34 models
    49876 
    49877 > hide #!3 models
    49878 
    49879 Drag select of 156 residues 
    49880 
    49881 > select up
    49882 
    49883 1558 atoms, 1584 bonds, 194 residues, 1 model selected 
    49884 
    49885 > select up
    49886 
    49887 9810 atoms, 10032 bonds, 1233 residues, 1 model selected 
    49888 
    49889 > select down
    49890 
    49891 1558 atoms, 1584 bonds, 194 residues, 1 model selected 
    49892 Drag select of 197 residues 
    49893 
    49894 > select up
    49895 
    49896 1710 atoms, 1739 bonds, 214 residues, 1 model selected 
    49897 
    49898 > delete sel
    49899 
    49900 Drag select of 89 residues, 3 pseudobonds 
    49901 
    49902 > select up
    49903 
    49904 1348 atoms, 1375 bonds, 3 pseudobonds, 177 residues, 2 models selected 
    49905 
    49906 > delete sel
    49907 
    49908 Drag select of 8 residues 
    49909 
    49910 > delete sel
    49911 
    49912 > show #!3 models
    49913 
    49914 > hide #!3 models
    49915 
    49916 > show #!30 models
    49917 
    49918 > hide #!30 models
    49919 
    49920 > show #27.2 models
    49921 
    49922 > fitmap #1 inMap #34
    49923 
    49924 Fit molecule CopA-F8WHL2.pdb (#1) to map
    49925 relion_locres_filtered_20240326_GT.mrc (#34) using 6696 atoms 
    49926 average map value = 0.007765, steps = 68 
    49927 shifted from previous position = 0.739 
    49928 rotated from previous position = 0.952 degrees 
    49929 atoms outside contour = 3587, contour level = 0.0073311 
    49930  
    49931 Position of CopA-F8WHL2.pdb (#1) relative to
    49932 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49933 Matrix rotation and translation 
    49934 0.74504812 0.59199968 0.30731039 209.86635543 
    49935 -0.12528750 0.57673472 -0.80726706 282.53055788 
    49936 -0.65513841 0.56295065 0.50386528 266.54966434 
    49937 Axis 0.75219668 0.52834728 -0.39376300 
    49938 Axis point 0.00000000 -289.36381832 369.37988482 
    49939 Rotation angle (degrees) 65.61763811 
    49940 Shift along axis 202.17763230 
    49941  
    49942 
    49943 > fitmap #1 inMap #34
    49944 
    49945 Fit molecule CopA-F8WHL2.pdb (#1) to map
    49946 relion_locres_filtered_20240326_GT.mrc (#34) using 6696 atoms 
    49947 average map value = 0.007764, steps = 40 
    49948 shifted from previous position = 0.0353 
    49949 rotated from previous position = 0.0293 degrees 
    49950 atoms outside contour = 3596, contour level = 0.0073311 
    49951  
    49952 Position of CopA-F8WHL2.pdb (#1) relative to
    49953 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49954 Matrix rotation and translation 
    49955 0.74507195 0.59194685 0.30735439 209.84046391 
    49956 -0.12490471 0.57649071 -0.80750064 282.51296927 
    49957 -0.65518441 0.56325606 0.50346400 266.52699347 
    49958 Axis 0.75237628 0.52831502 -0.39346305 
    49959 Axis point 0.00000000 -289.07271763 369.13608189 
    49960 Rotation angle (degrees) 65.63718359 
    49961 Shift along axis 202.26631021 
    49962  
    49963 
    49964 > hide #27.2 models
    49965 
    49966 > show #27.2 models
    49967 
    49968 > hide #27.2 models
    49969 
    49970 > show #27.2 models
    49971 
    49972 > fitmap #1 inMap #34
    49973 
    49974 Fit molecule CopA-F8WHL2.pdb (#1) to map
    49975 relion_locres_filtered_20240326_GT.mrc (#34) using 6696 atoms 
    49976 average map value = 0.007764, steps = 28 
    49977 shifted from previous position = 0.0364 
    49978 rotated from previous position = 0.0161 degrees 
    49979 atoms outside contour = 3589, contour level = 0.0073311 
    49980  
    49981 Position of CopA-F8WHL2.pdb (#1) relative to
    49982 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    49983 Matrix rotation and translation 
    49984 0.74506354 0.59198084 0.30730929 209.86888132 
    49985 -0.12512801 0.57661233 -0.80737922 282.52551876 
    49986 -0.65515136 0.56309582 0.50368621 266.54833056 
    49987 Axis 0.75228442 0.52831619 -0.39363710 
    49988 Axis point 0.00000000 -289.24096229 369.28145085 
    49989 Rotation angle (degrees) 65.62663487 
    49990 Shift along axis 202.22058227 
    49991  
    49992 
    49993 > fitmap #1 inMap #34
    49994 
    49995 Fit molecule CopA-F8WHL2.pdb (#1) to map
    49996 relion_locres_filtered_20240326_GT.mrc (#34) using 6696 atoms 
    49997 average map value = 0.007764, steps = 44 
    49998 shifted from previous position = 0.0344 
    49999 rotated from previous position = 0.0145 degrees 
    50000 atoms outside contour = 3594, contour level = 0.0073311 
    50001  
    50002 Position of CopA-F8WHL2.pdb (#1) relative to
    50003 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50004 Matrix rotation and translation 
    50005 0.74510831 0.59194177 0.30727603 209.84031429 
    50006 -0.12496767 0.57647605 -0.80750136 282.51167816 
    50007 -0.65513105 0.56327640 0.50351068 266.53073234 
    50008 Axis 0.75240063 0.52825170 -0.39350150 
    50009 Axis point 0.00000000 -289.06685996 369.16873400 
    50010 Rotation angle (degrees) 65.63503331 
    50011 Shift along axis 202.24101644 
    50012  
    50013 
    50014 > ui tool show Matchmaker
    50015 
    50016 The cached device pixel ratio value was stale on window expose. Please file a
    50017 QTBUG which explains how to reproduce. 
    50018 
    50019 > matchmaker #27.2 to #1
    50020 
    50021 Parameters 
    50022 --- 
    50023 Chain pairing | bb 
    50024 Alignment algorithm | Needleman-Wunsch 
    50025 Similarity matrix | BLOSUM-62 
    50026 SS fraction | 0.3 
    50027 Gap open (HH/SS/other) | 18/18/6 
    50028 Gap extend | 1 
    50029 SS matrix |  |  | H | S | O 
    50030 ---|---|---|--- 
    50031 H | 6 | -9 | -6 
    50032 S |  | 6 | -6 
    50033 O |  |  | 4 
    50034 Iteration cutoff | 2 
    50035  
    50036 Matchmaker CopA-F8WHL2.pdb, chain A (#1) with
    50037 3mkq_yeast_alpha_betaprimeCOPI.cif B, chain B (#27.2), sequence alignment
    50038 score = 481.9 
    50039 RMSD between 128 pruned atom pairs is 0.920 angstroms; (across all 175 pairs:
    50040 3.040) 
    50041  
    50042 
    50043 > fitmap #1 inMap #34
    50044 
    50045 Fit molecule CopA-F8WHL2.pdb (#1) to map
    50046 relion_locres_filtered_20240326_GT.mrc (#34) using 6696 atoms 
    50047 average map value = 0.007764, steps = 44 
    50048 shifted from previous position = 0.0344 
    50049 rotated from previous position = 0.0145 degrees 
    50050 atoms outside contour = 3594, contour level = 0.0073311 
    50051  
    50052 Position of CopA-F8WHL2.pdb (#1) relative to
    50053 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50054 Matrix rotation and translation 
    50055 0.74510831 0.59194177 0.30727603 209.84031429 
    50056 -0.12496767 0.57647605 -0.80750136 282.51167816 
    50057 -0.65513105 0.56327640 0.50351068 266.53073234 
    50058 Axis 0.75240063 0.52825170 -0.39350150 
    50059 Axis point 0.00000000 -289.06685996 369.16873400 
    50060 Rotation angle (degrees) 65.63503331 
    50061 Shift along axis 202.24101644 
    50062  
    50063 
    50064 > fitmap #27.2 inMap #34
    50065 
    50066 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    50067 relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms 
    50068 average map value = 0.009083, steps = 96 
    50069 shifted from previous position = 11.1 
    50070 rotated from previous position = 14.2 degrees 
    50071 atoms outside contour = 717, contour level = 0.0073311 
    50072  
    50073 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    50074 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50075 Matrix rotation and translation 
    50076 0.98957852 0.01454291 -0.14325800 -45.84740165 
    50077 0.02408635 0.96415153 0.26425685 -113.49444007 
    50078 0.14196549 -0.26495346 0.95375336 -31.15818392 
    50079 Axis -0.88017677 -0.47438057 0.01587254 
    50080 Axis point 0.00000000 -164.91280797 238.91025494 
    50081 Rotation angle (degrees) 17.49528335 
    50082 Shift along axis 93.69881529 
    50083  
    50084 
    50085 > ui tool show Matchmaker
    50086 
    50087 The cached device pixel ratio value was stale on window expose. Please file a
    50088 QTBUG which explains how to reproduce. 
    50089 
    50090 > matchmaker #!1 to #27.2
    50091 
    50092 Parameters 
    50093 --- 
    50094 Chain pairing | bb 
    50095 Alignment algorithm | Needleman-Wunsch 
    50096 Similarity matrix | BLOSUM-62 
    50097 SS fraction | 0.3 
    50098 Gap open (HH/SS/other) | 18/18/6 
    50099 Gap extend | 1 
    50100 SS matrix |  |  | H | S | O 
    50101 ---|---|---|--- 
    50102 H | 6 | -9 | -6 
    50103 S |  | 6 | -6 
    50104 O |  |  | 4 
    50105 Iteration cutoff | 2 
    50106  
    50107 Matchmaker 3mkq_yeast_alpha_betaprimeCOPI.cif B, chain B (#27.2) with
    50108 CopA-F8WHL2.pdb, chain A (#1), sequence alignment score = 481.9 
    50109 RMSD between 128 pruned atom pairs is 0.920 angstroms; (across all 175 pairs:
    50110 3.040) 
    50111  
    50112 
    50113 > hide #27.2 models
    50114 
    50115 > show #27.2 models
    50116 
    50117 > hide #27.2 models
    50118 
    50119 > show #27.2 models
    50120 
    50121 The cached device pixel ratio value was stale on window expose. Please file a
    50122 QTBUG which explains how to reproduce. 
    50123 
    50124 > hide #27.2 models
    50125 
    50126 > show #27.2 models
    50127 
    50128 > hide #27.2 models
    50129 
    50130 Drag select of 13 residues 
    50131 
    50132 > delete sel
    50133 
    50134 Drag select of 149 residues 
    50135 Drag select of 154 residues 
    50136 
    50137 > select up
    50138 
    50139 1232 atoms, 1254 bonds, 155 residues, 1 model selected 
    50140 
    50141 > delete sel
    50142 
    50143 > show #27.2 models
    50144 
    50145 > fitmap #1 inMap #34
    50146 
    50147 Fit molecule CopA-F8WHL2.pdb (#1) to map
    50148 relion_locres_filtered_20240326_GT.mrc (#34) using 5369 atoms 
    50149 average map value = 0.008503, steps = 88 
    50150 shifted from previous position = 9.87 
    50151 rotated from previous position = 14.7 degrees 
    50152 atoms outside contour = 2569, contour level = 0.0073311 
    50153  
    50154 Position of CopA-F8WHL2.pdb (#1) relative to
    50155 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50156 Matrix rotation and translation 
    50157 0.74613401 0.59321950 0.30228241 209.86370296 
    50158 -0.11997346 0.56637890 -0.81536575 282.25496270 
    50159 -0.65489725 0.57210625 0.49376516 266.21520350 
    50160 Axis 0.75806648 0.52296970 -0.38966385 
    50161 Axis point 0.00000000 -280.46538443 365.14298706 
    50162 Rotation angle (degrees) 66.22543800 
    50163 Shift along axis 202.96698955 
    50164  
    50165 
    50166 > show #!34 models
    50167 
    50168 > hide #27.2 models
    50169 
    50170 > show #27.2 models
    50171 
    50172 > hide #27.2 models
    50173 
    50174 > show #27.2 models
    50175 
    50176 > hide #27.2 models
    50177 
    50178 > hide #!1 models
    50179 
    50180 > show #!1 models
    50181 
    50182 > hide #!34 models
    50183 
    50184 > show #!30 models
    50185 
    50186 > fitmap #30 inMap #34
    50187 
    50188 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    50189 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    50190 average map value = 0.009303, steps = 28 
    50191 shifted from previous position = 0.0341 
    50192 rotated from previous position = 0.0274 degrees 
    50193 atoms outside contour = 1174, contour level = 0.0073311 
    50194  
    50195 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    50196 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50197 Matrix rotation and translation 
    50198 0.79102377 -0.51948810 0.32313081 236.69401192 
    50199 -0.42077528 -0.07856116 0.90375678 306.92760494 
    50200 -0.44410536 -0.85085854 -0.28073150 224.06164756 
    50201 Axis -0.91502074 0.40010879 0.05147811 
    50202 Axis point 0.00000000 298.35529009 -19.95959041 
    50203 Rotation angle (degrees) 106.50711717 
    50204 Shift along axis -82.24122865 
    50205  
    50206 
    50207 > hide #!1 models
    50208 
    50209 > show #!1 models
    50210 
    50211 > hide #!30 models
    50212 
    50213 > show #!30 models
    50214 
    50215 > hide #!30 models
    50216 
    50217 > show #!30 models
    50218 
    50219 > hide #!30 models
    50220 
    50221 > ui mousemode right select
    50222 
    50223 Drag select of 1 residues 
    50224 Drag select of 31 residues 
    50225 
    50226 > select up
    50227 
    50228 458 atoms, 466 bonds, 53 residues, 1 model selected 
    50229 
    50230 > select up
    50231 
    50232 5369 atoms, 5500 bonds, 666 residues, 1 model selected 
    50233 
    50234 > select down
    50235 
    50236 458 atoms, 466 bonds, 53 residues, 1 model selected 
    50237 
    50238 > delete sel
    50239 
    50240 Drag select of 130 residues, 5 pseudobonds 
    50241 
    50242 > delete sel
    50243 
    50244 Drag select of 103 residues, 9 pseudobonds 
    50245 
    50246 > select up
    50247 
    50248 1024 atoms, 1036 bonds, 9 pseudobonds, 129 residues, 2 models selected 
    50249 
    50250 > delete sel
    50251 
    50252 > fitmap #1 inMap #34
    50253 
    50254 Fit molecule CopA-F8WHL2.pdb (#1) to map
    50255 relion_locres_filtered_20240326_GT.mrc (#34) using 2828 atoms 
    50256 average map value = 0.008232, steps = 88 
    50257 shifted from previous position = 1.5 
    50258 rotated from previous position = 2.26 degrees 
    50259 atoms outside contour = 1434, contour level = 0.0073311 
    50260  
    50261 Position of CopA-F8WHL2.pdb (#1) relative to
    50262 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50263 Matrix rotation and translation 
    50264 0.76973912 0.57262498 0.28213884 209.07872450 
    50265 -0.11316399 0.55737848 -0.82251027 282.30528869 
    50266 -0.62824804 0.60119037 0.49383654 267.66031403 
    50267 Axis 0.78064812 0.49918627 -0.37603401 
    50268 Axis point 0.00000000 -266.67800857 363.23324447 
    50269 Rotation angle (degrees) 65.76519291 
    50270 Shift along axis 203.49045495 
    50271  
    50272 
    50273 > show #!34 models
    50274 
    50275 > show #!30 models
    50276 
    50277 > show #27.2 models
    50278 
    50279 > fitmap #1 inMap #34
    50280 
    50281 Fit molecule CopA-F8WHL2.pdb (#1) to map
    50282 relion_locres_filtered_20240326_GT.mrc (#34) using 2828 atoms 
    50283 average map value = 0.008232, steps = 44 
    50284 shifted from previous position = 0.0283 
    50285 rotated from previous position = 0.0435 degrees 
    50286 atoms outside contour = 1427, contour level = 0.0073311 
    50287  
    50288 Position of CopA-F8WHL2.pdb (#1) relative to
    50289 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50290 Matrix rotation and translation 
    50291 0.76961659 0.57283286 0.28205111 209.09137949 
    50292 -0.11376863 0.55769249 -0.82221395 282.32528611 
    50293 -0.62828895 0.60070093 0.49437980 267.68501324 
    50294 Axis 0.78035887 0.49925118 -0.37654787 
    50295 Axis point 0.00000000 -267.04771184 363.57213507 
    50296 Rotation angle (degrees) 65.74210797 
    50297 Shift along axis 203.32132493 
    50298  
    50299 
    50300 > fitmap #27.2 inMap #34
    50301 
    50302 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    50303 relion_locres_filtered_20240326_GT.mrc (#34) using 1407 atoms 
    50304 average map value = 0.009083, steps = 48 
    50305 shifted from previous position = 0.00597 
    50306 rotated from previous position = 0.0186 degrees 
    50307 atoms outside contour = 717, contour level = 0.0073311 
    50308  
    50309 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    50310 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50311 Matrix rotation and translation 
    50312 0.98958692 0.01431371 -0.14322309 -45.81333740 
    50313 0.02426352 0.96421466 0.26401019 -113.45822597 
    50314 0.14187677 -0.26473613 0.95382691 -31.20533647 
    50315 Axis -0.88007902 -0.47453835 0.01656110 
    50316 Axis point 0.00000000 -165.41785940 239.01187615 
    50317 Rotation angle (degrees) 17.48145353 
    50318 Shift along axis 93.64284212 
    50319  
    50320 
    50321 > fitmap #30 inMap #34
    50322 
    50323 Fit molecule 4j87_yeast_alphaCOPI.cif (#30) to map
    50324 relion_locres_filtered_20240326_GT.mrc (#34) using 2737 atoms 
    50325 average map value = 0.009304, steps = 28 
    50326 shifted from previous position = 0.0504 
    50327 rotated from previous position = 0.047 degrees 
    50328 atoms outside contour = 1169, contour level = 0.0073311 
    50329  
    50330 Position of 4j87_yeast_alphaCOPI.cif (#30) relative to
    50331 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50332 Matrix rotation and translation 
    50333 0.79064076 -0.52013247 0.32303159 236.67421339 
    50334 -0.42073055 -0.07822749 0.90380655 306.89666144 
    50335 -0.44482918 -0.85049555 -0.28068547 224.01557023 
    50336 Axis -0.91485786 0.40043472 0.05183749 
    50337 Axis point 0.00000000 298.39182963 -19.92191304 
    50338 Rotation angle (degrees) 106.50721587 
    50339 Shift along axis -82.01878235 
    50340  
    50341 
    50342 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    50343 > dataset/Chimera sessions/20240708_leaf_fitting_v34_labelled.cxs"
    50344 
    50345 > hide #!30 models
    50346 
    50347 > hide #27.2 models
    50348 
    50349 > hide #!1 models
    50350 
    50351 > show #7 models
    50352 
    50353 > hide #7 models
    50354 
    50355 > show #27.1 models
    50356 
    50357 > hide #!34 models
    50358 
    50359 > show #7 models
    50360 
    50361 > ui tool show Matchmaker
    50362 
    50363 The cached device pixel ratio value was stale on window expose. Please file a
    50364 QTBUG which explains how to reproduce. 
    50365 
    50366 > matchmaker #7 to #27.1
    50367 
    50368 Parameters 
    50369 --- 
    50370 Chain pairing | bb 
    50371 Alignment algorithm | Needleman-Wunsch 
    50372 Similarity matrix | BLOSUM-62 
    50373 SS fraction | 0.3 
    50374 Gap open (HH/SS/other) | 18/18/6 
    50375 Gap extend | 1 
    50376 SS matrix |  |  | H | S | O 
    50377 ---|---|---|--- 
    50378 H | 6 | -9 | -6 
    50379 S |  | 6 | -6 
    50380 O |  |  | 4 
    50381 Iteration cutoff | 2 
    50382  
    50383 Matchmaker 3mkq_yeast_alpha_betaprimeCOPI.cif A, chain A (#27.1) with
    50384 CopBprime_O55029.pdb, chain A (#7), sequence alignment score = 2455.4 
    50385 RMSD between 517 pruned atom pairs is 0.958 angstroms; (across all 790 pairs:
    50386 3.624) 
    50387  
    50388 
    50389 > fitmap #27.1 inMap #34
    50390 
    50391 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    50392 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    50393 average map value = 0.009129, steps = 48 
    50394 shifted from previous position = 0.0194 
    50395 rotated from previous position = 0.0607 degrees 
    50396 atoms outside contour = 2945, contour level = 0.0073311 
    50397  
    50398 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    50399 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50400 Matrix rotation and translation 
    50401 0.99556882 0.00314645 0.09398307 -80.48372282 
    50402 -0.00470546 0.99985491 0.01637118 -75.53389376 
    50403 -0.09391792 -0.01674087 0.99543918 -68.55547662 
    50404 Axis -0.17339992 0.98399275 -0.04111857 
    50405 Axis point -800.05814897 0.00000000 924.82289501 
    50406 Rotation angle (degrees) 5.47888119 
    50407 Shift along axis -57.55002917 
    50408  
    50409 
    50410 > fitmap #7 inMap #34
    50411 
    50412 Fit molecule CopBprime_O55029.pdb (#7) to map
    50413 relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms 
    50414 average map value = 0.009017, steps = 60 
    50415 shifted from previous position = 0.998 
    50416 rotated from previous position = 4.89 degrees 
    50417 atoms outside contour = 3026, contour level = 0.0073311 
    50418  
    50419 Position of CopBprime_O55029.pdb (#7) relative to
    50420 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50421 Matrix rotation and translation 
    50422 -0.13119013 -0.23155876 -0.96393448 237.20355678 
    50423 0.00439169 -0.97246439 0.23301013 213.62738725 
    50424 -0.99134750 0.02633533 0.12859467 275.46492911 
    50425 Axis -0.65639645 0.08706337 0.74937552 
    50426 Axis point 228.27373609 105.75304677 -0.00000000 
    50427 Rotation angle (degrees) 170.94216411 
    50428 Shift along axis 69.32622238 
    50429  
    50430 
    50431 > hide #!25 models
    50432 
    50433 > show #!25 models
    50434 
    50435 > hide #!25 models
    50436 
    50437 > hide #27.1 models
    50438 
    50439 > show #27.1 models
    50440 
    50441 > hide #27.1 models
    50442 
    50443 > show #27.1 models
    50444 
    50445 > hide #27.1 models
    50446 
    50447 > show #27.1 models
    50448 
    50449 > show #!34 models
    50450 
    50451 > hide #27.1 models
    50452 
    50453 > show #27.1 models
    50454 
    50455 > hide #27.1 models
    50456 
    50457 > show #27.1 models
    50458 
    50459 > hide #27.1 models
    50460 
    50461 > show #27.1 models
    50462 
    50463 > fitmap #7 inMap #34
    50464 
    50465 Fit molecule CopBprime_O55029.pdb (#7) to map
    50466 relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms 
    50467 average map value = 0.009017, steps = 60 
    50468 shifted from previous position = 0.998 
    50469 rotated from previous position = 4.89 degrees 
    50470 atoms outside contour = 3026, contour level = 0.0073311 
    50471  
    50472 Position of CopBprime_O55029.pdb (#7) relative to
    50473 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50474 Matrix rotation and translation 
    50475 -0.13119013 -0.23155876 -0.96393448 237.20355678 
    50476 0.00439169 -0.97246439 0.23301013 213.62738725 
    50477 -0.99134750 0.02633533 0.12859467 275.46492911 
    50478 Axis -0.65639645 0.08706337 0.74937552 
    50479 Axis point 228.27373609 105.75304677 0.00000000 
    50480 Rotation angle (degrees) 170.94216411 
    50481 Shift along axis 69.32622238 
    50482  
    50483 
    50484 > fitmap #7 inMap #34
    50485 
    50486 Fit molecule CopBprime_O55029.pdb (#7) to map
    50487 relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms 
    50488 average map value = 0.009017, steps = 60 
    50489 shifted from previous position = 0.998 
    50490 rotated from previous position = 4.89 degrees 
    50491 atoms outside contour = 3026, contour level = 0.0073311 
    50492  
    50493 Position of CopBprime_O55029.pdb (#7) relative to
    50494 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50495 Matrix rotation and translation 
    50496 -0.13119013 -0.23155876 -0.96393448 237.20355678 
    50497 0.00439169 -0.97246439 0.23301013 213.62738725 
    50498 -0.99134750 0.02633533 0.12859467 275.46492911 
    50499 Axis -0.65639645 0.08706337 0.74937552 
    50500 Axis point 228.27373609 105.75304677 -0.00000000 
    50501 Rotation angle (degrees) 170.94216411 
    50502 Shift along axis 69.32622238 
    50503  
    50504 
    50505 > fitmap #7 inMap #34
    50506 
    50507 Fit molecule CopBprime_O55029.pdb (#7) to map
    50508 relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms 
    50509 average map value = 0.009017, steps = 60 
    50510 shifted from previous position = 0.998 
    50511 rotated from previous position = 4.89 degrees 
    50512 atoms outside contour = 3026, contour level = 0.0073311 
    50513  
    50514 Position of CopBprime_O55029.pdb (#7) relative to
    50515 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50516 Matrix rotation and translation 
    50517 -0.13119013 -0.23155876 -0.96393448 237.20355678 
    50518 0.00439169 -0.97246439 0.23301013 213.62738725 
    50519 -0.99134750 0.02633533 0.12859467 275.46492911 
    50520 Axis -0.65639645 0.08706337 0.74937552 
    50521 Axis point 228.27373609 105.75304677 -0.00000000 
    50522 Rotation angle (degrees) 170.94216411 
    50523 Shift along axis 69.32622238 
    50524  
    50525 
    50526 > fitmap #7 inMap #34
    50527 
    50528 Fit molecule CopBprime_O55029.pdb (#7) to map
    50529 relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms 
    50530 average map value = 0.009017, steps = 60 
    50531 shifted from previous position = 0.998 
    50532 rotated from previous position = 4.89 degrees 
    50533 atoms outside contour = 3026, contour level = 0.0073311 
    50534  
    50535 Position of CopBprime_O55029.pdb (#7) relative to
    50536 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50537 Matrix rotation and translation 
    50538 -0.13119013 -0.23155876 -0.96393448 237.20355678 
    50539 0.00439169 -0.97246439 0.23301013 213.62738725 
    50540 -0.99134750 0.02633533 0.12859467 275.46492911 
    50541 Axis -0.65639645 0.08706337 0.74937552 
    50542 Axis point 228.27373609 105.75304677 0.00000000 
    50543 Rotation angle (degrees) 170.94216411 
    50544 Shift along axis 69.32622238 
    50545  
    50546 
    50547 > fitmap #7 inMap #34
    50548 
    50549 Fit molecule CopBprime_O55029.pdb (#7) to map
    50550 relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms 
    50551 average map value = 0.009017, steps = 60 
    50552 shifted from previous position = 0.998 
    50553 rotated from previous position = 4.89 degrees 
    50554 atoms outside contour = 3026, contour level = 0.0073311 
    50555  
    50556 Position of CopBprime_O55029.pdb (#7) relative to
    50557 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50558 Matrix rotation and translation 
    50559 -0.13119013 -0.23155876 -0.96393448 237.20355678 
    50560 0.00439169 -0.97246439 0.23301013 213.62738725 
    50561 -0.99134750 0.02633533 0.12859467 275.46492911 
    50562 Axis -0.65639645 0.08706337 0.74937552 
    50563 Axis point 228.27373609 105.75304677 0.00000000 
    50564 Rotation angle (degrees) 170.94216411 
    50565 Shift along axis 69.32622238 
    50566  
    50567 
    50568 > fitmap #7 inMap #34
    50569 
    50570 Fit molecule CopBprime_O55029.pdb (#7) to map
    50571 relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms 
    50572 average map value = 0.009017, steps = 60 
    50573 shifted from previous position = 0.998 
    50574 rotated from previous position = 4.89 degrees 
    50575 atoms outside contour = 3026, contour level = 0.0073311 
    50576  
    50577 Position of CopBprime_O55029.pdb (#7) relative to
    50578 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50579 Matrix rotation and translation 
    50580 -0.13119013 -0.23155876 -0.96393448 237.20355678 
    50581 0.00439169 -0.97246439 0.23301013 213.62738725 
    50582 -0.99134750 0.02633533 0.12859467 275.46492911 
    50583 Axis -0.65639645 0.08706337 0.74937552 
    50584 Axis point 228.27373609 105.75304677 0.00000000 
    50585 Rotation angle (degrees) 170.94216411 
    50586 Shift along axis 69.32622238 
    50587  
    50588 
    50589 > fitmap #7 inMap #34
    50590 
    50591 Fit molecule CopBprime_O55029.pdb (#7) to map
    50592 relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms 
    50593 average map value = 0.009017, steps = 60 
    50594 shifted from previous position = 0.998 
    50595 rotated from previous position = 4.89 degrees 
    50596 atoms outside contour = 3026, contour level = 0.0073311 
    50597  
    50598 Position of CopBprime_O55029.pdb (#7) relative to
    50599 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50600 Matrix rotation and translation 
    50601 -0.13119013 -0.23155876 -0.96393448 237.20355678 
    50602 0.00439169 -0.97246439 0.23301013 213.62738725 
    50603 -0.99134750 0.02633533 0.12859467 275.46492911 
    50604 Axis -0.65639645 0.08706337 0.74937552 
    50605 Axis point 228.27373609 105.75304677 0.00000000 
    50606 Rotation angle (degrees) 170.94216411 
    50607 Shift along axis 69.32622238 
    50608  
    50609 
    50610 > fitmap #7 inMap #34
    50611 
    50612 Fit molecule CopBprime_O55029.pdb (#7) to map
    50613 relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms 
    50614 average map value = 0.009017, steps = 60 
    50615 shifted from previous position = 0.998 
    50616 rotated from previous position = 4.89 degrees 
    50617 atoms outside contour = 3026, contour level = 0.0073311 
    50618  
    50619 Position of CopBprime_O55029.pdb (#7) relative to
    50620 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50621 Matrix rotation and translation 
    50622 -0.13119013 -0.23155876 -0.96393448 237.20355678 
    50623 0.00439169 -0.97246439 0.23301013 213.62738725 
    50624 -0.99134750 0.02633533 0.12859467 275.46492911 
    50625 Axis -0.65639645 0.08706337 0.74937552 
    50626 Axis point 228.27373609 105.75304677 0.00000000 
    50627 Rotation angle (degrees) 170.94216411 
    50628 Shift along axis 69.32622238 
    50629  
    50630 
    50631 > hide #7 models
    50632 
    50633 > show #7 models
    50634 
    50635 > hide #7 models
    50636 
    50637 > show #7 models
    50638 
    50639 > fitmap #27.1 inMap #34
    50640 
    50641 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    50642 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    50643 average map value = 0.009129, steps = 28 
    50644 shifted from previous position = 0.0431 
    50645 rotated from previous position = 0.0479 degrees 
    50646 atoms outside contour = 2939, contour level = 0.0073311 
    50647  
    50648 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    50649 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50650 Matrix rotation and translation 
    50651 0.99562004 0.00345097 0.09342818 -80.41290975 
    50652 -0.00494862 0.99986288 0.01580295 -75.40022926 
    50653 -0.09336083 -0.01619607 0.99550060 -68.64017862 
    50654 Axis -0.16868570 0.98467481 -0.04427917 
    50655 Axis point -807.22349213 0.00000000 926.92051736 
    50656 Rotation angle (degrees) 5.44257527 
    50657 Shift along axis -57.64086882 
    50658  
    50659 
    50660 > fitmap #27.1 inMap #34
    50661 
    50662 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    50663 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    50664 average map value = 0.009129, steps = 28 
    50665 shifted from previous position = 0.0412 
    50666 rotated from previous position = 0.0352 degrees 
    50667 atoms outside contour = 2944, contour level = 0.0073311 
    50668  
    50669 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    50670 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50671 Matrix rotation and translation 
    50672 0.99557079 0.00346147 0.09395116 -80.51283445 
    50673 -0.00499735 0.99985762 0.01611732 -75.48425279 
    50674 -0.09388199 -0.01651544 0.99544634 -68.57582442 
    50675 Axis -0.17100048 0.98427338 -0.04432547 
    50676 Axis point -802.39712605 0.00000000 923.77388963 
    50677 Rotation angle (degrees) 5.47533051 
    50678 Shift along axis -57.48975145 
    50679  
    50680 
    50681 > fitmap #27.1 inMap #34
    50682 
    50683 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    50684 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    50685 average map value = 0.00913, steps = 44 
    50686 shifted from previous position = 0.0408 
    50687 rotated from previous position = 0.0274 degrees 
    50688 atoms outside contour = 2939, contour level = 0.0073311 
    50689  
    50690 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    50691 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50692 Matrix rotation and translation 
    50693 0.99558674 0.00368020 0.09377362 -80.49497003 
    50694 -0.00517595 0.99986315 0.01571245 -75.38038534 
    50695 -0.09370297 -0.01612848 0.99546955 -68.63492522 
    50696 Axis -0.16726043 0.98481456 -0.04652137 
    50697 Axis point -805.69492318 0.00000000 923.18001399 
    50698 Rotation angle (degrees) 5.46189300 
    50699 Shift along axis -57.57908693 
    50700  
    50701 
    50702 > fitmap #27.1 inMap #34
    50703 
    50704 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    50705 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    50706 average map value = 0.009129, steps = 44 
    50707 shifted from previous position = 0.034 
    50708 rotated from previous position = 0.0358 degrees 
    50709 atoms outside contour = 2942, contour level = 0.0073311 
    50710  
    50711 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    50712 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50713 Matrix rotation and translation 
    50714 0.99555643 0.00340933 0.09410514 -80.53037149 
    50715 -0.00495438 0.99985667 0.01618957 -75.49091907 
    50716 -0.09403646 -0.01658387 0.99543062 -68.56837507 
    50717 Axis -0.17144703 0.98422131 -0.04375295 
    50718 Axis point -800.75273762 0.00000000 922.68257308 
    50719 Rotation angle (degrees) 5.48464047 
    50720 Shift along axis -57.49301012 
    50721  
    50722 
    50723 > fitmap #27.1 inMap #34
    50724 
    50725 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    50726 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    50727 average map value = 0.00913, steps = 44 
    50728 shifted from previous position = 0.0336 
    50729 rotated from previous position = 0.0327 degrees 
    50730 atoms outside contour = 2940, contour level = 0.0073311 
    50731  
    50732 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    50733 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50734 Matrix rotation and translation 
    50735 0.99557579 0.00369621 0.09388926 -80.51670044 
    50736 -0.00519484 0.99986290 0.01572232 -75.38146501 
    50737 -0.09381827 -0.01614050 0.99545850 -68.62961875 
    50738 Axis -0.16717103 0.98482376 -0.04664768 
    50739 Axis point -804.78365522 0.00000000 922.16302415 
    50740 Rotation angle (degrees) 5.46859046 
    50741 Shift along axis -57.57598531 
    50742  
    50743 
    50744 > fitmap #27.1 inMap #34
    50745 
    50746 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    50747 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    50748 average map value = 0.009129, steps = 64 
    50749 shifted from previous position = 0.00589 
    50750 rotated from previous position = 0.00894 degrees 
    50751 atoms outside contour = 2939, contour level = 0.0073311 
    50752  
    50753 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    50754 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50755 Matrix rotation and translation 
    50756 0.99557361 0.00357088 0.09391721 -80.50555370 
    50757 -0.00507885 0.99986192 0.01582224 -75.39753821 
    50758 -0.09384774 -0.01622920 0.99545428 -68.62415739 
    50759 Axis -0.16809268 0.98472688 -0.04536323 
    50760 Axis point -803.75002633 0.00000000 922.40898965 
    50761 Rotation angle (degrees) 5.47080806 
    50762 Shift along axis -57.60057463 
    50763  
    50764 
    50765 > hide #!34 models
    50766 
    50767 > hide #27.1 models
    50768 
    50769 > show #27.1 models
    50770 
    50771 > hide #27.1 models
    50772 
    50773 > show #27.1 models
    50774 
    50775 > hide #7 models
    50776 
    50777 > show #7 models
    50778 
    50779 > hide #7 models
    50780 
    50781 > show #7 models
    50782 
    50783 > hide #7 models
    50784 
    50785 > hide #27.1 models
    50786 
    50787 > show #27.1 models
    50788 
    50789 > show #7 models
    50790 
    50791 > ui tool show Matchmaker
    50792 
    50793 The cached device pixel ratio value was stale on window expose. Please file a
    50794 QTBUG which explains how to reproduce. 
    50795 
    50796 > matchmaker #7 to #27.1
    50797 
    50798 Parameters 
    50799 --- 
    50800 Chain pairing | bb 
    50801 Alignment algorithm | Needleman-Wunsch 
    50802 Similarity matrix | BLOSUM-62 
    50803 SS fraction | 0.3 
    50804 Gap open (HH/SS/other) | 18/18/6 
    50805 Gap extend | 1 
    50806 SS matrix |  |  | H | S | O 
    50807 ---|---|---|--- 
    50808 H | 6 | -9 | -6 
    50809 S |  | 6 | -6 
    50810 O |  |  | 4 
    50811 Iteration cutoff | 2 
    50812  
    50813 Matchmaker 3mkq_yeast_alpha_betaprimeCOPI.cif A, chain A (#27.1) with
    50814 CopBprime_O55029.pdb, chain A (#7), sequence alignment score = 2455.4 
    50815 RMSD between 517 pruned atom pairs is 0.958 angstroms; (across all 790 pairs:
    50816 3.624) 
    50817  
    50818 
    50819 > ui tool show Matchmaker
    50820 
    50821 The cached device pixel ratio value was stale on window expose. Please file a
    50822 QTBUG which explains how to reproduce. 
    50823 
    50824 > fitmap #3 inMap #34
    50825 
    50826 Fit molecule CopA_F8WHL2.pdb (#3) to map
    50827 relion_locres_filtered_20240326_GT.mrc (#34) using 5284 atoms 
    50828 average map value = 0.008583, steps = 48 
    50829 shifted from previous position = 0.14 
    50830 rotated from previous position = 0.745 degrees 
    50831 atoms outside contour = 2530, contour level = 0.0073311 
    50832  
    50833 Position of CopA_F8WHL2.pdb (#3) relative to
    50834 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50835 Matrix rotation and translation 
    50836 0.90665218 0.40362707 0.12274770 209.67691237 
    50837 -0.23919967 0.73148708 -0.63852185 283.03177820 
    50838 -0.34751306 0.54955602 0.75975182 275.81749836 
    50839 Axis 0.83062053 0.32877326 -0.44941927 
    50840 Axis point 0.00000000 -386.46550217 532.01547934 
    50841 Rotation angle (degrees) 45.65753367 
    50842 Shift along axis 143.25752972 
    50843  
    50844 
    50845 > fitmap #3 inMap #34
    50846 
    50847 Fit molecule CopA_F8WHL2.pdb (#3) to map
    50848 relion_locres_filtered_20240326_GT.mrc (#34) using 5284 atoms 
    50849 average map value = 0.008583, steps = 40 
    50850 shifted from previous position = 0.0095 
    50851 rotated from previous position = 0.0126 degrees 
    50852 atoms outside contour = 2529, contour level = 0.0073311 
    50853  
    50854 Position of CopA_F8WHL2.pdb (#3) relative to
    50855 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50856 Matrix rotation and translation 
    50857 0.90660849 0.40366478 0.12294623 209.68701855 
    50858 -0.23909291 0.73148131 -0.63856844 283.03757552 
    50859 -0.34770046 0.54953600 0.75968056 275.82022350 
    50860 Axis 0.83057060 0.32901595 -0.44933393 
    50861 Axis point 0.00000000 -386.51434698 531.90852668 
    50862 Rotation angle (degrees) 45.66236913 
    50863 Shift along axis 143.34836235 
    50864  
    50865 
    50866 > fitmap #3 inMap #34
    50867 
    50868 Fit molecule CopA_F8WHL2.pdb (#3) to map
    50869 relion_locres_filtered_20240326_GT.mrc (#34) using 5284 atoms 
    50870 average map value = 0.008583, steps = 36 
    50871 shifted from previous position = 0.00112 
    50872 rotated from previous position = 0.0134 degrees 
    50873 atoms outside contour = 2529, contour level = 0.0073311 
    50874  
    50875 Position of CopA_F8WHL2.pdb (#3) relative to
    50876 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50877 Matrix rotation and translation 
    50878 0.90666262 0.40360359 0.12274782 209.67968108 
    50879 -0.23918745 0.73150404 -0.63850700 283.03919042 
    50880 -0.34749424 0.54955069 0.75976429 275.82218780 
    50881 Axis 0.83062904 0.32876915 -0.44940655 
    50882 Axis point 0.00000000 -386.48381822 532.03434149 
    50883 Rotation angle (degrees) 45.65593678 
    50884 Shift along axis 143.26428911 
    50885  
    50886 
    50887 > fitmap #27.1 inMap #34
    50888 
    50889 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    50890 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    50891 average map value = 0.009129, steps = 28 
    50892 shifted from previous position = 0.0459 
    50893 rotated from previous position = 0.0427 degrees 
    50894 atoms outside contour = 2940, contour level = 0.0073311 
    50895  
    50896 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    50897 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50898 Matrix rotation and translation 
    50899 0.99552363 0.00341180 0.09445138 -80.59011687 
    50900 -0.00497571 0.99985432 0.01632724 -75.52022536 
    50901 -0.09438192 -0.01672411 0.99539558 -68.54190891 
    50902 Axis -0.17224348 0.98408413 -0.04371059 
    50903 Axis point -797.71248757 0.00000000 920.18898582 
    50904 Rotation angle (degrees) 5.50563652 
    50905 Shift along axis -57.44112491 
    50906  
    50907 
    50908 > show #!34 models
    50909 
    50910 > fitmap #7 inMap #34
    50911 
    50912 Fit molecule CopBprime_O55029.pdb (#7) to map
    50913 relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms 
    50914 average map value = 0.009017, steps = 60 
    50915 shifted from previous position = 0.998 
    50916 rotated from previous position = 4.91 degrees 
    50917 atoms outside contour = 3026, contour level = 0.0073311 
    50918  
    50919 Position of CopBprime_O55029.pdb (#7) relative to
    50920 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50921 Matrix rotation and translation 
    50922 -0.13120990 -0.23154697 -0.96393462 237.20289761 
    50923 0.00437986 -0.97246680 0.23300031 213.62737022 
    50924 -0.99134493 0.02635005 0.12861142 275.46418453 
    50925 Axis -0.65638947 0.08706420 0.74938154 
    50926 Axis point 228.27213575 105.75135926 -0.00000000 
    50927 Rotation angle (degrees) 170.94315167 
    50928 Shift along axis 69.32958732 
    50929  
    50930 
    50931 > hide #!34 models
    50932 
    50933 > hide #27.1 models
    50934 
    50935 > show #27.1 models
    50936 
    50937 > hide #27.1 models
    50938 
    50939 > show #27.1 models
    50940 
    50941 > hide #7 models
    50942 
    50943 > hide #27.1 models
    50944 
    50945 > show #27.1 models
    50946 
    50947 > fitmap #27.1 inMap #34
    50948 
    50949 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    50950 relion_locres_filtered_20240326_GT.mrc (#34) using 6538 atoms 
    50951 average map value = 0.00913, steps = 28 
    50952 shifted from previous position = 0.0457 
    50953 rotated from previous position = 0.0619 degrees 
    50954 atoms outside contour = 2939, contour level = 0.0073311 
    50955  
    50956 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    50957 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50958 Matrix rotation and translation 
    50959 0.99560552 0.00359656 0.09357736 -80.45250014 
    50960 -0.00508864 0.99986362 0.01571114 -75.37948401 
    50961 -0.09350809 -0.01611828 0.99548804 -68.64346831 
    50962 Axis -0.16754757 0.98480336 -0.04571819 
    50963 Axis point -806.89472186 0.00000000 925.01065336 
    50964 Rotation angle (degrees) 5.45052511 
    50965 Shift along axis -57.61609285 
    50966  
    50967 
    50968 > hide #27.1 models
    50969 
    50970 > show #27.1 models
    50971 
    50972 > hide #27.1 models
    50973 
    50974 > show #32.1 models
    50975 
    50976 > show #!4 models
    50977 
    50978 > fitmap #4 inMap #34
    50979 
    50980 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    50981 relion_locres_filtered_20240326_GT.mrc (#34) using 7211 atoms 
    50982 average map value = 0.009134, steps = 48 
    50983 shifted from previous position = 0.016 
    50984 rotated from previous position = 0.013 degrees 
    50985 atoms outside contour = 3428, contour level = 0.0073311 
    50986  
    50987 Position of CopB_Q9JIF7.pdb (#4) relative to
    50988 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    50989 Matrix rotation and translation 
    50990 -0.02190054 -0.73060769 0.68244617 220.15974033 
    50991 -0.01329605 0.68276237 0.73051952 241.08944678 
    50992 -0.99967174 0.00692493 -0.02466706 272.98068147 
    50993 Axis -0.36793573 0.85532879 0.36474096 
    50994 Axis point 254.82558488 0.00000000 -62.21074267 
    50995 Rotation angle (degrees) 100.48060128 
    50996 Shift along axis 224.77334454 
    50997  
    50998 
    50999 > fitmap #32.1 inMap #34
    51000 
    51001 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map
    51002 relion_locres_filtered_20240326_GT.mrc (#34) using 2991 atoms 
    51003 average map value = 0.01065, steps = 48 
    51004 shifted from previous position = 0.0114 
    51005 rotated from previous position = 0.0315 degrees 
    51006 atoms outside contour = 1320, contour level = 0.0073311 
    51007  
    51008 Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to
    51009 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    51010 Matrix rotation and translation 
    51011 0.99554492 -0.07909143 0.05133089 253.49540545 
    51012 0.06846252 0.98068108 0.18324164 192.96045198 
    51013 -0.06483207 -0.17891104 0.98172687 287.89487728 
    51014 Axis -0.88774495 0.28475028 0.36169902 
    51015 Axis point 0.00000000 1840.70608600 -961.47810858 
    51016 Rotation angle (degrees) 11.76940835 
    51017 Shift along axis -65.96242614 
    51018  
    51019 
    51020 > hide #32.1 models
    51021 
    51022 > show #32.1 models
    51023 
    51024 > hide #!4 models
    51025 
    51026 > show #!4 models
    51027 
    51028 > show #!34 models
    51029 
    51030 > hide #!34 models
    51031 
    51032 > hide #32.1 models
    51033 
    51034 > show #32.1 models
    51035 
    51036 > hide #32.1 models
    51037 
    51038 > show #32.1 models
    51039 
    51040 > hide #32.1 models
    51041 
    51042 > show #32.1 models
    51043 
    51044 > hide #32.1 models
    51045 
    51046 Drag select of 94 residues 
    51047 
    51048 > select up
    51049 
    51050 830 atoms, 842 bonds, 105 residues, 1 model selected 
    51051 
    51052 > delete sel
    51053 
    51054 Drag select of 132 residues, 1 pseudobonds 
    51055 
    51056 > delete sel
    51057 
    51058 > show #32.1 models
    51059 
    51060 > hide #32.1 models
    51061 
    51062 Drag select of 79 residues, 1 pseudobonds 
    51063 
    51064 > select up
    51065 
    51066 728 atoms, 735 bonds, 1 pseudobond, 93 residues, 2 models selected 
    51067 
    51068 > delete sel
    51069 
    51070 > show #32.1 models
    51071 
    51072 > hide #32.1 models
    51073 
    51074 > show #32.1 models
    51075 
    51076 > hide #32.1 models
    51077 
    51078 Drag select of 12 residues, 1 pseudobonds 
    51079 
    51080 > select clear
    51081 
    51082 [Repeated 1 time(s)]Drag select of 30 residues, 1 pseudobonds 
    51083 
    51084 > select up
    51085 
    51086 280 atoms, 278 bonds, 1 pseudobond, 35 residues, 2 models selected 
    51087 
    51088 > delete sel
    51089 
    51090 > show #32.1 models
    51091 
    51092 > hide #32.1 models
    51093 
    51094 Drag select of 11 residues 
    51095 
    51096 > delete sel
    51097 
    51098 > show #32.1 models
    51099 
    51100 > hide #32.1 models
    51101 
    51102 > show #32.1 models
    51103 
    51104 > hide #32.1 models
    51105 
    51106 > show #32.1 models
    51107 
    51108 > hide #32.1 models
    51109 
    51110 Drag select of 18 residues 
    51111 
    51112 > show #32.1 models
    51113 
    51114 > hide #32.1 models
    51115 
    51116 > show #32.1 models
    51117 
    51118 > hide #32.1 models
    51119 
    51120 > delete sel
    51121 
    51122 > show #32.1 models
    51123 
    51124 > hide #!4 models
    51125 
    51126 > show #!4 models
    51127 
    51128 > show #!34 models
    51129 
    51130 > fitmap #4 inMap #34
    51131 
    51132 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    51133 relion_locres_filtered_20240326_GT.mrc (#34) using 4053 atoms 
    51134 average map value = 0.00875, steps = 84 
    51135 shifted from previous position = 0.663 
    51136 rotated from previous position = 1.09 degrees 
    51137 atoms outside contour = 1917, contour level = 0.0073311 
    51138  
    51139 Position of CopB_Q9JIF7.pdb (#4) relative to
    51140 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    51141 Matrix rotation and translation 
    51142 -0.02330996 -0.73054950 0.68246178 220.11377170 
    51143 -0.03222225 0.68284160 0.72985551 241.56432118 
    51144 -0.99920887 -0.00497756 -0.03945696 273.35537315 
    51145 Axis -0.37423079 0.85642978 0.35563935 
    51146 Axis point 256.52305737 0.00000000 -59.47243657 
    51147 Rotation angle (degrees) 100.95060483 
    51148 Shift along axis 221.72545586 
    51149  
    51150 
    51151 > fitmap #4 inMap #34
    51152 
    51153 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    51154 relion_locres_filtered_20240326_GT.mrc (#34) using 4053 atoms 
    51155 average map value = 0.00875, steps = 44 
    51156 shifted from previous position = 0.00769 
    51157 rotated from previous position = 0.0192 degrees 
    51158 atoms outside contour = 1917, contour level = 0.0073311 
    51159  
    51160 Position of CopB_Q9JIF7.pdb (#4) relative to
    51161 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    51162 Matrix rotation and translation 
    51163 -0.02322843 -0.73068717 0.68231716 220.11112695 
    51164 -0.03197079 0.68269515 0.73000356 241.56483053 
    51165 -0.99921885 -0.00485738 -0.03921858 273.34926672 
    51166 Axis -0.37423858 0.85634658 0.35583144 
    51167 Axis point 256.51701092 0.00000000 -59.53984280 
    51168 Rotation angle (degrees) 100.94554389 
    51169 Shift along axis 221.75540414 
    51170  
    51171 
    51172 > hide #!34 models
    51173 
    51174 > fitmap #32.1 inMap #34
    51175 
    51176 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map
    51177 relion_locres_filtered_20240326_GT.mrc (#34) using 2991 atoms 
    51178 average map value = 0.01065, steps = 44 
    51179 shifted from previous position = 0.0433 
    51180 rotated from previous position = 0.0426 degrees 
    51181 atoms outside contour = 1326, contour level = 0.0073311 
    51182  
    51183 Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to
    51184 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    51185 Matrix rotation and translation 
    51186 0.99550918 -0.07964090 0.05117412 253.51946298 
    51187 0.06906069 0.98072053 0.18280553 192.97867574 
    51188 -0.06474631 -0.17845047 0.98181635 287.90390194 
    51189 Axis -0.88651951 0.28446788 0.36491257 
    51190 Axis point 0.00000000 1843.87837432 -962.01397733 
    51191 Rotation angle (degrees) 11.75631197 
    51192 Shift along axis -64.79396291 
    51193  
    51194 
    51195 > show #!34 models
    51196 
    51197 > hide #32.1 models
    51198 
    51199 > show #32.1 models
    51200 
    51201 > hide #!4 models
    51202 
    51203 > show #!4 models
    51204 
    51205 > show #!9 models
    51206 
    51207 > hide #!9 models
    51208 
    51209 > show #!9 models
    51210 
    51211 > hide #!4 models
    51212 
    51213 > hide #!27 models
    51214 
    51215 > show #!26.2 models
    51216 
    51217 > hide #!34 models
    51218 
    51219 > hide #32.1 models
    51220 
    51221 > hide #!32 models
    51222 
    51223 > hide #!26.2 models
    51224 
    51225 > show #!26.2 models
    51226 
    51227 > hide #!26.2 models
    51228 
    51229 > hide #!9 models
    51230 
    51231 > show #!4 models
    51232 
    51233 > hide #!4 models
    51234 
    51235 > show #!9 models
    51236 
    51237 > show #!26.2 models
    51238 
    51239 > ui tool show Matchmaker
    51240 
    51241 > matchmaker #!9 to #26.2
    51242 
    51243 Parameters 
    51244 --- 
    51245 Chain pairing | bb 
    51246 Alignment algorithm | Needleman-Wunsch 
    51247 Similarity matrix | BLOSUM-62 
    51248 SS fraction | 0.3 
    51249 Gap open (HH/SS/other) | 18/18/6 
    51250 Gap extend | 1 
    51251 SS matrix |  |  | H | S | O 
    51252 ---|---|---|--- 
    51253 H | 6 | -9 | -6 
    51254 S |  | 6 | -6 
    51255 O |  |  | 4 
    51256 Iteration cutoff | 2 
    51257  
    51258 Matchmaker 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B, chain B (#26.2) with
    51259 CopG_Q9QZE5, chain A (#9), sequence alignment score = 1225.6 
    51260 RMSD between 134 pruned atom pairs is 0.962 angstroms; (across all 264 pairs:
    51261 3.567) 
    51262  
    51263 
    51264 > hide #!26.2 models
    51265 
    51266 > show #!26.2 models
    51267 
    51268 > hide #!26.2 models
    51269 
    51270 > show #!26.2 models
    51271 
    51272 > show #!34 models
    51273 
    51274 > hide #!26.2 models
    51275 
    51276 > show #!26.2 models
    51277 
    51278 > hide #!9 models
    51279 
    51280 > show #!9 models
    51281 
    51282 > hide #!34 models
    51283 
    51284 > hide #!9 models
    51285 
    51286 > show #!34 models
    51287 
    51288 > show #!9 models
    51289 
    51290 > hide #!9 models
    51291 
    51292 > hide #!26.2 models
    51293 
    51294 > show #!26.2 models
    51295 
    51296 > hide #!34 models
    51297 
    51298 > show #!9 models
    51299 
    51300 > fitmap #9 inMap #34
    51301 
    51302 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc
    51303 (#34) using 4566 atoms 
    51304 average map value = 0.01074, steps = 80 
    51305 shifted from previous position = 3.34 
    51306 rotated from previous position = 5.13 degrees 
    51307 atoms outside contour = 2028, contour level = 0.0073311 
    51308  
    51309 Position of CopG_Q9QZE5 (#9) relative to
    51310 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    51311 Matrix rotation and translation 
    51312 0.49909802 -0.51905420 -0.69389041 274.35179074 
    51313 0.54047840 -0.43944705 0.71747431 318.90217910 
    51314 -0.67733615 -0.73312279 0.06121043 295.12418884 
    51315 Axis -0.80749448 -0.00921515 0.58980314 
    51316 Axis point 0.00000000 283.39239014 124.73019154 
    51317 Rotation angle (degrees) 116.07640404 
    51318 Shift along axis -50.41111464 
    51319  
    51320 
    51321 > hide #!26.2 models
    51322 
    51323 Drag select of 110 residues 
    51324 
    51325 > select up
    51326 
    51327 890 atoms, 903 bonds, 113 residues, 1 model selected 
    51328 
    51329 > delete sel
    51330 
    51331 Drag select of 91 residues 
    51332 
    51333 > delete sel
    51334 
    51335 > show #!26.2 models
    51336 
    51337 > hide #!26.2 models
    51338 
    51339 > show #!26.2 models
    51340 
    51341 > fitmap #9 inMap #34
    51342 
    51343 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc
    51344 (#34) using 2967 atoms 
    51345 average map value = 0.01054, steps = 48 
    51346 shifted from previous position = 0.34 
    51347 rotated from previous position = 2.65 degrees 
    51348 atoms outside contour = 1301, contour level = 0.0073311 
    51349  
    51350 Position of CopG_Q9QZE5 (#9) relative to
    51351 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    51352 Matrix rotation and translation 
    51353 0.50694806 -0.52845739 -0.68098197 274.69010864 
    51354 0.50218549 -0.46103022 0.73161524 318.98755518 
    51355 -0.70058075 -0.71287020 0.03166526 293.78792105 
    51356 Axis -0.81398555 0.01104416 0.58078012 
    51357 Axis point 0.00000000 281.65107335 125.70418936 
    51358 Rotation angle (degrees) 117.46511421 
    51359 Shift along axis -49.44464915 
    51360  
    51361 
    51362 > fitmap #9 inMap #34
    51363 
    51364 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc
    51365 (#34) using 2967 atoms 
    51366 average map value = 0.01054, steps = 44 
    51367 shifted from previous position = 0.0334 
    51368 rotated from previous position = 0.0167 degrees 
    51369 atoms outside contour = 1307, contour level = 0.0073311 
    51370  
    51371 Position of CopG_Q9QZE5 (#9) relative to
    51372 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    51373 Matrix rotation and translation 
    51374 0.50719854 -0.52835467 -0.68087516 274.66421831 
    51375 0.50208682 -0.46096711 0.73172272 318.96544548 
    51376 -0.70047018 -0.71298713 0.03147807 293.79283152 
    51377 Axis -0.81408188 0.01104163 0.58064513 
    51378 Axis point 0.00000000 281.64332366 125.67569448 
    51379 Rotation angle (degrees) 117.46103343 
    51380 Shift along axis -49.48788799 
    51381  
    51382 
    51383 > hide #!26.2 models
    51384 
    51385 Drag select of 47 residues 
    51386 
    51387 > delete sel
    51388 
    51389 Drag select of 2 pseudobonds 
    51390 
    51391 > delete sel
    51392 
    51393 Drag select of 5 residues, 4 pseudobonds 
    51394 
    51395 > select clear
    51396 
    51397 Drag select of 3 residues, 3 pseudobonds 
    51398 
    51399 > delete sel
    51400 
    51401 Drag select of 1 residues, 1 pseudobonds 
    51402 
    51403 > delete sel
    51404 
    51405 > show #!26.2 models
    51406 
    51407 > fitmap #9 inMap #34
    51408 
    51409 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc
    51410 (#34) using 2556 atoms 
    51411 average map value = 0.01067, steps = 44 
    51412 shifted from previous position = 0.132 
    51413 rotated from previous position = 1.24 degrees 
    51414 atoms outside contour = 1127, contour level = 0.0073311 
    51415  
    51416 Position of CopG_Q9QZE5 (#9) relative to
    51417 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    51418 Matrix rotation and translation 
    51419 0.50346645 -0.54606842 -0.66957510 275.34669305 
    51420 0.49757014 -0.45030989 0.74138044 318.56014835 
    51421 -0.70636074 -0.70642075 0.04499141 293.43524311 
    51422 Axis -0.81103737 0.02060678 0.58463129 
    51423 Axis point 0.00000000 284.08429210 124.79243856 
    51424 Rotation angle (degrees) 116.80311155 
    51425 Shift along axis -45.20053501 
    51426  
    51427 
    51428 > fitmap #9 inMap #34
    51429 
    51430 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc
    51431 (#34) using 2556 atoms 
    51432 average map value = 0.01067, steps = 44 
    51433 shifted from previous position = 0.0204 
    51434 rotated from previous position = 0.0722 degrees 
    51435 atoms outside contour = 1122, contour level = 0.0073311 
    51436  
    51437 Position of CopG_Q9QZE5 (#9) relative to
    51438 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    51439 Matrix rotation and translation 
    51440 0.50388998 -0.54672525 -0.66871996 275.37547012 
    51441 0.49734592 -0.44933645 0.74212114 318.52128539 
    51442 -0.70621662 -0.70653255 0.04549543 293.46301271 
    51443 Axis -0.81107915 0.02099381 0.58455956 
    51444 Axis point 0.00000000 284.26016119 124.66985760 
    51445 Rotation angle (degrees) 116.74211330 
    51446 Shift along axis -45.11771772 
    51447  
    51448 
    51449 > hide #!26.2 models
    51450 
    51451 > show #!26.2 models
    51452 
    51453 > hide #!26.2 models
    51454 
    51455 > show #!26.2 models
    51456 
    51457 > hide #!26.2 models
    51458 
    51459 > show #!26.2 models
    51460 
    51461 > hide #!26.2 models
    51462 
    51463 Drag select of 14 residues, 3 pseudobonds 
    51464 
    51465 > select up
    51466 
    51467 150 atoms, 148 bonds, 3 pseudobonds, 19 residues, 2 models selected 
    51468 
    51469 > select down
    51470 
    51471 111 atoms, 3 pseudobonds, 14 residues, 2 models selected 
    51472 
    51473 > select up
    51474 
    51475 150 atoms, 148 bonds, 3 pseudobonds, 19 residues, 2 models selected 
    51476 
    51477 > delete sel
    51478 
    51479 Drag select of 1 residues, 2 pseudobonds 
    51480 
    51481 > delete sel
    51482 
    51483 Drag select of 1 pseudobonds 
    51484 Drag select of 1 residues, 2 pseudobonds 
    51485 
    51486 > select clear
    51487 
    51488 Drag select of 2 residues, 2 pseudobonds 
    51489 
    51490 > delete sel
    51491 
    51492 Drag select of 2 pseudobonds 
    51493 
    51494 > delete sel
    51495 
    51496 Drag select of 1 pseudobonds 
    51497 [Repeated 1 time(s)]
    51498 
    51499 > select up
    51500 
    51501 3 pseudobonds, 1 model selected 
    51502 
    51503 > select down
    51504 
    51505 1 pseudobond, 1 model selected 
    51506 
    51507 > select down
    51508 
    51509 1 pseudobond, 1 model selected 
    51510 
    51511 > select up
    51512 
    51513 3 pseudobonds, 1 model selected 
    51514 
    51515 > select down
    51516 
    51517 1 pseudobond, 1 model selected 
    51518 
    51519 > select up
    51520 
    51521 3 pseudobonds, 1 model selected 
    51522 
    51523 > select down
    51524 
    51525 1 pseudobond, 1 model selected 
    51526 
    51527 > select up
    51528 
    51529 3 pseudobonds, 1 model selected 
    51530 
    51531 > delete sel
    51532 
    51533 > show #!26.2 models
    51534 
    51535 > fitmap #9 inMap #34
    51536 
    51537 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc
    51538 (#34) using 2387 atoms 
    51539 average map value = 0.01097, steps = 48 
    51540 shifted from previous position = 0.248 
    51541 rotated from previous position = 1.1 degrees 
    51542 atoms outside contour = 1022, contour level = 0.0073311 
    51543  
    51544 Position of CopG_Q9QZE5 (#9) relative to
    51545 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    51546 Matrix rotation and translation 
    51547 0.49155273 -0.56119812 -0.66590733 275.57602159 
    51548 0.49529023 -0.44878681 0.74382658 318.38781306 
    51549 -0.71628451 -0.69544739 0.05735357 292.72367981 
    51550 Axis -0.80581155 0.02820485 0.59149998 
    51551 Axis point 0.00000000 284.91739309 125.39260440 
    51552 Rotation angle (degrees) 116.73985088 
    51553 Shift along axis -39.93621102 
    51554  
    51555 
    51556 > hide #!26.2 models
    51557 
    51558 Drag select of 10 residues, 1 pseudobonds 
    51559 
    51560 > delete sel
    51561 
    51562 > fitmap #9 inMap #34
    51563 
    51564 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc
    51565 (#34) using 2320 atoms 
    51566 average map value = 0.01101, steps = 44 
    51567 shifted from previous position = 0.0826 
    51568 rotated from previous position = 0.368 degrees 
    51569 atoms outside contour = 997, contour level = 0.0073311 
    51570  
    51571 Position of CopG_Q9QZE5 (#9) relative to
    51572 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    51573 Matrix rotation and translation 
    51574 0.49545404 -0.56085852 -0.66329708 275.65475289 
    51575 0.49656935 -0.44365201 0.74605078 318.22072220 
    51576 -0.71270202 -0.69900687 0.05869596 293.01955930 
    51577 Axis -0.80670507 0.02758037 0.59031030 
    51578 Axis point 0.00000000 285.62651096 124.66198228 
    51579 Rotation angle (degrees) 116.40740917 
    51580 Shift along axis -40.62297843 
    51581  
    51582 
    51583 > show #!26.2 models
    51584 
    51585 > hide #!26.2 models
    51586 
    51587 Drag select of 17 residues, 2 pseudobonds 
    51588 
    51589 > delete sel
    51590 
    51591 > show #!26.2 models
    51592 
    51593 > fitmap #9 inMap #34
    51594 
    51595 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc
    51596 (#34) using 2198 atoms 
    51597 average map value = 0.01107, steps = 64 
    51598 shifted from previous position = 0.0821 
    51599 rotated from previous position = 0.57 degrees 
    51600 atoms outside contour = 938, contour level = 0.0073311 
    51601  
    51602 Position of CopG_Q9QZE5 (#9) relative to
    51603 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    51604 Matrix rotation and translation 
    51605 0.48746773 -0.56652448 -0.66439840 275.59439501 
    51606 0.49867194 -0.44398039 0.74445128 318.28970725 
    51607 -0.71672973 -0.69421281 0.06608375 292.75462419 
    51608 Axis -0.80334240 0.02922154 0.59480004 
    51609 Axis point 0.00000000 285.75896486 125.23483142 
    51610 Rotation angle (degrees) 116.43706053 
    51611 Shift along axis -37.96528696 
    51612  
    51613 
    51614 > hide #!26.2 models
    51615 
    51616 Drag select of 3 residues, 1 pseudobonds 
    51617 
    51618 > delete sel
    51619 
    51620 Drag select of 3 pseudobonds 
    51621 
    51622 > delete sel
    51623 
    51624 [Repeated 2 time(s)]
    51625 
    51626 > hide #!9 models
    51627 
    51628 > show #!9 models
    51629 
    51630 Drag select of 1 pseudobonds 
    51631 
    51632 > delete sel
    51633 
    51634 [Repeated 1 time(s)]
    51635 
    51636 > select clear
    51637 
    51638 Drag select of 3 pseudobonds 
    51639 
    51640 > delete sel
    51641 
    51642 > ui mousemode right "map eraser"
    51643 
    51644 > ui mousemode right select
    51645 
    51646 Drag select of 1 pseudobonds 
    51647 
    51648 > select add #9
    51649 
    51650 2173 atoms, 2202 bonds, 4 pseudobonds, 277 residues, 2 models selected 
    51651 
    51652 > select subtract #9
    51653 
    51654 Nothing selected 
    51655 
    51656 > select clear
    51657 
    51658 Drag select of 1 pseudobonds 
    51659 
    51660 > delete sel
    51661 
    51662 > fitmap #9 inMap #34
    51663 
    51664 Fit molecule CopG_Q9QZE5 (#9) to map relion_locres_filtered_20240326_GT.mrc
    51665 (#34) using 2173 atoms 
    51666 average map value = 0.01105, steps = 36 
    51667 shifted from previous position = 0.0381 
    51668 rotated from previous position = 0.188 degrees 
    51669 atoms outside contour = 934, contour level = 0.0073311 
    51670  
    51671 Position of CopG_Q9QZE5 (#9) relative to
    51672 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    51673 Matrix rotation and translation 
    51674 0.48672193 -0.56899802 -0.66282955 275.67132143 
    51675 0.49682989 -0.44379152 0.74579430 318.21999902 
    51676 -0.71851362 -0.69230797 0.06669216 292.62144714 
    51677 Axis -0.80301721 0.03109325 0.59514416 
    51678 Axis point 0.00000000 285.90801042 125.25047280 
    51679 Rotation angle (degrees) 116.43541348 
    51680 Shift along axis -37.32237979 
    51681  
    51682 
    51683 > show #!26.2 models
    51684 
    51685 > show #!34 models
    51686 
    51687 > select add #9
    51688 
    51689 2173 atoms, 2202 bonds, 4 pseudobonds, 277 residues, 2 models selected 
    51690 
    51691 > select subtract #9
    51692 
    51693 Nothing selected 
    51694 
    51695 > hide #!9 models
    51696 
    51697 > hide #!34 models
    51698 
    51699 > hide #!26.2 models
    51700 
    51701 > show #!9 models
    51702 
    51703 > hide #!9 models
    51704 
    51705 > show #8 models
    51706 
    51707 > hide #!26 models
    51708 
    51709 > show #32.2 models
    51710 
    51711 > fitmap #8 inMap #34
    51712 
    51713 Fit molecule CopD_Q5XJY5 (#8) to map relion_locres_filtered_20240326_GT.mrc
    51714 (#34) using 1462 atoms 
    51715 average map value = 0.00841, steps = 40 
    51716 shifted from previous position = 0.0348 
    51717 rotated from previous position = 0.104 degrees 
    51718 atoms outside contour = 714, contour level = 0.0073311 
    51719  
    51720 Position of CopD_Q5XJY5 (#8) relative to
    51721 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    51722 Matrix rotation and translation 
    51723 0.07010812 0.98860161 0.13323554 -99.31408813 
    51724 -0.91255617 0.00961540 0.40883835 163.15937558 
    51725 0.40289713 -0.15024780 0.90282861 445.76147651 
    51726 Axis -0.27955371 -0.13483593 -0.95061506 
    51727 Axis point -59.51477087 162.67491243 0.00000000 
    51728 Rotation angle (degrees) 90.49985085 
    51729 Shift along axis -417.98369690 
    51730  
    51731 
    51732 > fitmap #32.2 inMap #34
    51733 
    51734 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) to map
    51735 relion_locres_filtered_20240326_GT.mrc (#34) using 1222 atoms 
    51736 average map value = 0.009669, steps = 44 
    51737 shifted from previous position = 0.0317 
    51738 rotated from previous position = 0.0449 degrees 
    51739 atoms outside contour = 491, contour level = 0.0073311 
    51740  
    51741 Position of 5mu7_Thermophila_beta_deltaCOPI.cif B (#32.2) relative to
    51742 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    51743 Matrix rotation and translation 
    51744 0.97963550 0.04166777 0.19641305 249.13094960 
    51745 -0.05652550 0.99589796 0.07065489 194.54481704 
    51746 -0.19266333 -0.08031839 0.97797229 284.12672109 
    51747 Axis -0.35213506 0.90749463 -0.22902925 
    51748 Axis point 1633.48529893 0.00000000 -1141.61503211 
    51749 Rotation angle (degrees) 12.37847660 
    51750 Shift along axis 23.74730487 
    51751  
    51752 
    51753 > hide #8 models
    51754 
    51755 > show #8 models
    51756 
    51757 > show #!34 models
    51758 
    51759 > hide #32.2 models
    51760 
    51761 > show #32.1 models
    51762 
    51763 > hide #8 models
    51764 
    51765 > show #!4 models
    51766 
    51767 > hide #!34 models
    51768 
    51769 > hide #32.1 models
    51770 
    51771 > show #32.1 models
    51772 
    51773 > hide #!32 models
    51774 
    51775 > hide #32.1 models
    51776 
    51777 > show #28 models
    51778 
    51779 > hide #!4 models
    51780 
    51781 > show #10 models
    51782 
    51783 > hide #10 models
    51784 
    51785 > show #12 models
    51786 
    51787 > hide #28 models
    51788 
    51789 > show #28 models
    51790 
    51791 > show #!34 models
    51792 
    51793 > hide #12 models
    51794 
    51795 > show #10 models
    51796 
    51797 > hide #10 models
    51798 
    51799 > show #12 models
    51800 
    51801 > hide #12 models
    51802 
    51803 > show #12 models
    51804 
    51805 > hide #12 models
    51806 
    51807 > show #12 models
    51808 
    51809 > hide #12 models
    51810 
    51811 > show #!26.1 models
    51812 
    51813 > hide #28 models
    51814 
    51815 > hide #!26.1 models
    51816 
    51817 > show #!35 models
    51818 
    51819 > hide #!35 models
    51820 
    51821 > show #!36 models
    51822 
    51823 > show #!37 models
    51824 
    51825 > hide #!36 models
    51826 
    51827 > show #5 models
    51828 
    51829 > hide #5 models
    51830 
    51831 > show #6 models
    51832 
    51833 > hide #!34 models
    51834 
    51835 > hide #6 models
    51836 
    51837 > show #!3 models
    51838 
    51839 > hide #!3 models
    51840 
    51841 > show #!1 models
    51842 
    51843 > hide #!1 models
    51844 
    51845 > show #!34 models
    51846 
    51847 > hide #!37 models
    51848 
    51849 > hide #!26 models
    51850 
    51851 > view orient
    51852 
    51853 > show #!1 models
    51854 
    51855 > hide #!1 models
    51856 
    51857 > show #!1 models
    51858 
    51859 > show #!3 models
    51860 
    51861 > hide #!3 models
    51862 
    51863 > show #!3 models
    51864 
    51865 > hide #!3 models
    51866 
    51867 > show #!3 models
    51868 
    51869 > hide #!34 models
    51870 
    51871 > show #!30 models
    51872 
    51873 > show #27.2 models
    51874 
    51875 > hide #!3 models
    51876 
    51877 > show #!3 models
    51878 
    51879 > hide #!3 models
    51880 
    51881 > hide #!1 models
    51882 
    51883 > show #!1 models
    51884 
    51885 > hide #!1 models
    51886 
    51887 > show #!3 models
    51888 
    51889 > hide #!3 models
    51890 
    51891 > close #3
    51892 
    51893 > show #!1 models
    51894 
    51895 > show #!34 models
    51896 
    51897 > show #!4 models
    51898 
    51899 > show #8 models
    51900 
    51901 > show #!9 models
    51902 
    51903 > show #!24 models
    51904 
    51905 > show #!26.1 models
    51906 
    51907 > show #!26.2 models
    51908 
    51909 > show #26.3 models
    51910 
    51911 > show #28 models
    51912 
    51913 > show #!29 models
    51914 
    51915 > show #32.1 models
    51916 
    51917 > show #32.2 models
    51918 
    51919 > show #!35 models
    51920 
    51921 > show #!36 models
    51922 
    51923 > show #!37 models
    51924 
    51925 > show #38 models
    51926 
    51927 > hide #38 models
    51928 
    51929 > show #39 models
    51930 
    51931 > hide #39 models
    51932 
    51933 > show #!40 models
    51934 
    51935 > close #39
    51936 
    51937 > close #38
    51938 
    51939 > show #27.1 models
    51940 
    51941 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    51942 > dataset/Chimera sessions/20240708_leaf_fitting_v35_labelled.cxs"
    51943 
    51944 > hide #!4 models
    51945 
    51946 > show #!4 models
    51947 
    51948 > hide #!34 models
    51949 
    51950 > show #!34 models
    51951 
    51952 > hide #!26 models
    51953 
    51954 > hide #!27 models
    51955 
    51956 > hide #!34 models
    51957 
    51958 > hide #!35 models
    51959 
    51960 > hide #!36 models
    51961 
    51962 > hide #!37 models
    51963 
    51964 > hide #!40 models
    51965 
    51966 > hide #32.2 models
    51967 
    51968 > hide #!30 models
    51969 
    51970 > hide #!29 models
    51971 
    51972 > hide #28 models
    51973 
    51974 > show #28 models
    51975 
    51976 > hide #28 models
    51977 
    51978 > hide #!24 models
    51979 
    51980 > hide #!9 models
    51981 
    51982 > hide #8 models
    51983 
    51984 > hide #!4 models
    51985 
    51986 > show #!4 models
    51987 
    51988 > hide #!1 models
    51989 
    51990 > show #!34 models
    51991 
    51992 > volume #34 level 0.00463
    51993 
    51994 > show #!26 models
    51995 
    51996 > show #!27 models
    51997 
    51998 > show #!30 models
    51999 
    52000 > show #28 models
    52001 
    52002 > show #!29 models
    52003 
    52004 > show #!1 models
    52005 
    52006 > show #8 models
    52007 
    52008 > show #!9 models
    52009 
    52010 > show #!35 models
    52011 
    52012 > show #!36 models
    52013 
    52014 > show #!37 models
    52015 
    52016 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    52017 > dataset/Chimera sessions/20240708_leaf_fitting_v36_labelled.cxs"
    52018 
    52019 ——— End of log from Mon Jul 8 16:31:05 2024 ———
    52020 
    52021 opened ChimeraX session 
    52022 
    52023 > hide #!1 models
    52024 
    52025 > show #!1 models
    52026 
    52027 > hide #!4 models
    52028 
    52029 > hide #8 models
    52030 
    52031 > hide #!9 models
    52032 
    52033 > hide #!26 models
    52034 
    52035 > hide #!27 models
    52036 
    52037 > show #!27 models
    52038 
    52039 > hide #27.2 models
    52040 
    52041 > hide #28 models
    52042 
    52043 > hide #!29 models
    52044 
    52045 > hide #!32 models
    52046 
    52047 > hide #32.1 models
    52048 
    52049 > hide #!35 models
    52050 
    52051 > hide #!36 models
    52052 
    52053 > hide #!37 models
    52054 
    52055 > hide #27.1 models
    52056 
    52057 > show #27.2 models
    52058 
    52059 > hide #!34 models
    52060 
    52061 > hide #27.2 models
    52062 
    52063 > hide #!1 models
    52064 
    52065 The cached device pixel ratio value was stale on window expose. Please file a
    52066 QTBUG which explains how to reproduce. 
    52067 
    52068 > show #!1 models
    52069 
    52070 > hide #!30 models
    52071 
    52072 > ui mousemode right select
    52073 
    52074 Drag select of 6 residues 
    52075 
    52076 > delete sel
    52077 
    52078 > show #!30 models
    52079 
    52080 > hide #!30 models
    52081 
    52082 Drag select of 1 residues 
    52083 
    52084 > delete sel
    52085 
    52086 > ui tool show "Fit in Map"
    52087 
    52088 The cached device pixel ratio value was stale on window expose. Please file a
    52089 QTBUG which explains how to reproduce. 
    52090 
    52091 [Repeated 1 time(s)]
    52092 
    52093 > fitmap #1 inMap #34
    52094 
    52095 Fit molecule CopA-F8WHL2.pdb (#1) to map
    52096 relion_locres_filtered_20240326_GT.mrc (#34) using 2771 atoms 
    52097 average map value = 0.008155, steps = 80 
    52098 shifted from previous position = 0.211 
    52099 rotated from previous position = 0.555 degrees 
    52100 atoms outside contour = 871, contour level = 0.0046305 
    52101  
    52102 Position of CopA-F8WHL2.pdb (#1) relative to
    52103 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52104 Matrix rotation and translation 
    52105 0.76345177 0.57888387 0.28641728 208.93049254 
    52106 -0.11441205 0.55766611 -0.82214256 282.30992585 
    52107 -0.63565027 0.59489661 0.49198248 267.72071042 
    52108 Axis 0.77550079 0.50461845 -0.37941896 
    52109 Axis point 0.00000000 -268.97623519 363.55859518 
    52110 Rotation angle (degrees) 66.01169394 
    52111 Shift along axis 202.90624492 
    52112  
    52113 
    52114 > show #!30 models
    52115 
    52116 > show #27.2 models
    52117 
    52118 > hide #!30 models
    52119 
    52120 > hide #!1 models
    52121 
    52122 > show #!1 models
    52123 
    52124 > show #!30 models
    52125 
    52126 > hide #27.2 models
    52127 
    52128 > fitmap #1 inMap #34
    52129 
    52130 Fit molecule CopA-F8WHL2.pdb (#1) to map
    52131 relion_locres_filtered_20240326_GT.mrc (#34) using 2771 atoms 
    52132 average map value = 0.008156, steps = 80 
    52133 shifted from previous position = 0.0143 
    52134 rotated from previous position = 0.0356 degrees 
    52135 atoms outside contour = 871, contour level = 0.0046305 
    52136  
    52137 Position of CopA-F8WHL2.pdb (#1) relative to
    52138 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52139 Matrix rotation and translation 
    52140 0.76333102 0.57877816 0.28695227 208.94720365 
    52141 -0.11421575 0.55810949 -0.82186894 282.31642752 
    52142 -0.63583058 0.59458358 0.49212787 267.71075564 
    52143 Axis 0.77526812 0.50506749 -0.37929693 
    52144 Axis point 0.00000000 -269.27280295 363.51062044 
    52145 Rotation angle (degrees) 65.99701789 
    52146 Shift along axis 203.03709012 
    52147  
    52148 
    52149 > fitmap #1 inMap #34
    52150 
    52151 Fit molecule CopA-F8WHL2.pdb (#1) to map
    52152 relion_locres_filtered_20240326_GT.mrc (#34) using 2771 atoms 
    52153 average map value = 0.008155, steps = 84 
    52154 shifted from previous position = 0.0375 
    52155 rotated from previous position = 0.0476 degrees 
    52156 atoms outside contour = 872, contour level = 0.0046305 
    52157  
    52158 Position of CopA-F8WHL2.pdb (#1) relative to
    52159 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52160 Matrix rotation and translation 
    52161 0.76340944 0.57903839 0.28621771 208.94170314 
    52162 -0.11495598 0.55784514 -0.82194521 282.33128471 
    52163 -0.63560298 0.59457829 0.49242817 267.74785764 
    52164 Axis 0.77532859 0.50455494 -0.37985509 
    52165 Axis point 0.00000000 -269.22508204 363.86197383 
    52166 Rotation angle (degrees) 65.99343122 
    52167 Shift along axis 202.74473322 
    52168  
    52169 
    52170 > fitmap #1 inMap #34
    52171 
    52172 Fit molecule CopA-F8WHL2.pdb (#1) to map
    52173 relion_locres_filtered_20240326_GT.mrc (#34) using 2771 atoms 
    52174 average map value = 0.008156, steps = 76 
    52175 shifted from previous position = 0.00939 
    52176 rotated from previous position = 0.0197 degrees 
    52177 atoms outside contour = 874, contour level = 0.0046305 
    52178  
    52179 Position of CopA-F8WHL2.pdb (#1) relative to
    52180 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52181 Matrix rotation and translation 
    52182 0.76335812 0.57894538 0.28654253 208.94383715 
    52183 -0.11474512 0.55805259 -0.82183384 282.33157319 
    52184 -0.63570271 0.59447418 0.49242513 267.73980999 
    52185 Axis 0.77523958 0.50480616 -0.37970295 
    52186 Axis point 0.00000000 -269.33631433 363.78136540 
    52187 Rotation angle (degrees) 65.98863033 
    52188 Shift along axis 202.84265534 
    52189  
    52190 
    52191 > fitmap #1 inMap #34
    52192 
    52193 Fit molecule CopA-F8WHL2.pdb (#1) to map
    52194 relion_locres_filtered_20240326_GT.mrc (#34) using 2771 atoms 
    52195 average map value = 0.008155, steps = 64 
    52196 shifted from previous position = 0.0263 
    52197 rotated from previous position = 0.0287 degrees 
    52198 atoms outside contour = 869, contour level = 0.0046305 
    52199  
    52200 Position of CopA-F8WHL2.pdb (#1) relative to
    52201 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52202 Matrix rotation and translation 
    52203 0.76334765 0.57904701 0.28636504 208.93346258 
    52204 -0.11461033 0.55766302 -0.82211704 282.30534689 
    52205 -0.63573960 0.59474072 0.49205552 267.74112927 
    52206 Axis 0.77539505 0.50463455 -0.37961360 
    52207 Axis point 0.00000000 -269.06088199 363.65441165 
    52208 Rotation angle (degrees) 66.01276541 
    52209 Shift along axis 202.82883214 
    52210  
    52211 
    52212 > fitmap #1 inMap #34
    52213 
    52214 Fit molecule CopA-F8WHL2.pdb (#1) to map
    52215 relion_locres_filtered_20240326_GT.mrc (#34) using 2771 atoms 
    52216 average map value = 0.008155, steps = 84 
    52217 shifted from previous position = 0.0277 
    52218 rotated from previous position = 0.0388 degrees 
    52219 atoms outside contour = 872, contour level = 0.0046305 
    52220  
    52221 Position of CopA-F8WHL2.pdb (#1) relative to
    52222 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52223 Matrix rotation and translation 
    52224 0.76328504 0.57889200 0.28684489 208.95713954 
    52225 -0.11453396 0.55820402 -0.82176045 282.33242854 
    52226 -0.63582853 0.59438398 0.49237157 267.73728030 
    52227 Axis 0.77515473 0.50504358 -0.37956044 
    52228 Axis point -0.00000000 -269.42840638 363.69522541 
    52229 Rotation angle (degrees) 65.98785262 
    52230 Shift along axis 202.94181503 
    52231  
    52232 
    52233 > show #27.2 models
    52234 
    52235 > hide #!1 models
    52236 
    52237 > show #!1 models
    52238 
    52239 > hide #27.2 models
    52240 
    52241 > show #27.2 models
    52242 
    52243 > show #!34 models
    52244 
    52245 > hide #!34 models
    52246 
    52247 > show #!34 models
    52248 
    52249 > hide #!30 models
    52250 
    52251 > hide #!34 models
    52252 
    52253 > hide #27.2 models
    52254 
    52255 > ui mousemode right select
    52256 
    52257 Drag select of 14 residues 
    52258 
    52259 > delete sel
    52260 
    52261 > show #!34 models
    52262 
    52263 > fitmap #1 inMap #34
    52264 
    52265 Fit molecule CopA-F8WHL2.pdb (#1) to map
    52266 relion_locres_filtered_20240326_GT.mrc (#34) using 2662 atoms 
    52267 average map value = 0.00815, steps = 124 
    52268 shifted from previous position = 0.121 
    52269 rotated from previous position = 0.688 degrees 
    52270 atoms outside contour = 827, contour level = 0.0046305 
    52271  
    52272 Position of CopA-F8WHL2.pdb (#1) relative to
    52273 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52274 Matrix rotation and translation 
    52275 0.76721005 0.57679881 0.28052073 208.92511024 
    52276 -0.11147861 0.55061919 -0.82727929 282.31807879 
    52277 -0.63163381 0.60342492 0.48674130 267.50075303 
    52278 Axis 0.78136633 0.49816506 -0.37589657 
    52279 Axis point -0.00000000 -262.54380394 361.43249335 
    52280 Rotation angle (degrees) 66.27888011 
    52281 Shift along axis 203.33543503 
    52282  
    52283 
    52284 > fitmap #1 inMap #34
    52285 
    52286 Fit molecule CopA-F8WHL2.pdb (#1) to map
    52287 relion_locres_filtered_20240326_GT.mrc (#34) using 2662 atoms 
    52288 average map value = 0.00815, steps = 104 
    52289 shifted from previous position = 0.0272 
    52290 rotated from previous position = 0.0442 degrees 
    52291 atoms outside contour = 829, contour level = 0.0046305 
    52292  
    52293 Position of CopA-F8WHL2.pdb (#1) relative to
    52294 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52295 Matrix rotation and translation 
    52296 0.76735078 0.57654760 0.28065217 208.91656123 
    52297 -0.11083223 0.55034554 -0.82754819 282.29952623 
    52298 -0.63157660 0.60391444 0.48620813 267.47361378 
    52299 Axis 0.78165565 0.49812602 -0.37534639 
    52300 Axis point 0.00000000 -262.19588118 361.08511508 
    52301 Rotation angle (degrees) 66.29972170 
    52302 Shift along axis 203.52629268 
    52303  
    52304 
    52305 > fitmap #1 inMap #34
    52306 
    52307 Fit molecule CopA-F8WHL2.pdb (#1) to map
    52308 relion_locres_filtered_20240326_GT.mrc (#34) using 2662 atoms 
    52309 average map value = 0.00815, steps = 96 
    52310 shifted from previous position = 0.0103 
    52311 rotated from previous position = 0.0355 degrees 
    52312 atoms outside contour = 830, contour level = 0.0046305 
    52313  
    52314 Position of CopA-F8WHL2.pdb (#1) relative to
    52315 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52316 Matrix rotation and translation 
    52317 0.76729951 0.57642489 0.28104414 208.92543386 
    52318 -0.11082751 0.55084691 -0.82721517 282.31298248 
    52319 -0.63163971 0.60357438 0.48654830 267.47749914 
    52320 Axis 0.78143623 0.49846899 -0.37534795 
    52321 Axis point 0.00000000 -262.53711812 361.15091334 
    52322 Rotation angle (degrees) 66.27499439 
    52323 Shift along axis 203.58904116 
    52324  
    52325 
    52326 > fitmap #1 inMap #34
    52327 
    52328 Fit molecule CopA-F8WHL2.pdb (#1) to map
    52329 relion_locres_filtered_20240326_GT.mrc (#34) using 2662 atoms 
    52330 average map value = 0.00815, steps = 76 
    52331 shifted from previous position = 0.0115 
    52332 rotated from previous position = 0.0432 degrees 
    52333 atoms outside contour = 829, contour level = 0.0046305 
    52334  
    52335 Position of CopA-F8WHL2.pdb (#1) relative to
    52336 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52337 Matrix rotation and translation 
    52338 0.76729038 0.57673478 0.28043266 208.90991965 
    52339 -0.11114998 0.55026756 -0.82755743 282.29976135 
    52340 -0.63159414 0.60380677 0.48631906 267.48105056 
    52341 Axis 0.78159676 0.49801245 -0.37561963 
    52342 Axis point -0.00000000 -262.21899930 361.22198079 
    52343 Rotation angle (degrees) 66.30058043 
    52344 Shift along axis 203.40097692 
    52345  
    52346 
    52347 > hide #!34 models
    52348 
    52349 Drag select of 1 residues 
    52350 
    52351 > delete sel
    52352 
    52353 > show #27.2 models
    52354 
    52355 > show #!34 models
    52356 
    52357 > hide #!34 models
    52358 
    52359 > hide #!1 models
    52360 
    52361 Drag select of 1 residues 
    52362 Drag select of 3 residues 
    52363 
    52364 > delete sel
    52365 
    52366 Drag select of 1 residues 
    52367 
    52368 > delete sel
    52369 
    52370 > show #!1 models
    52371 
    52372 Drag select of 1 residues 
    52373 
    52374 > select #1/A:651
    52375 
    52376 7 atoms, 6 bonds, 1 residue, 1 model selected 
    52377 Drag select of 1 residues 
    52378 Drag select of 3 residues 
    52379 
    52380 > show sel atoms
    52381 
    52382 [Repeated 2 time(s)]
    52383 
    52384 > style sel stick
    52385 
    52386 Changed 23 atom styles 
    52387 
    52388 > select add #1
    52389 
    52390 2669 atoms, 2707 bonds, 334 residues, 2 models selected 
    52391 
    52392 > select subtract #1
    52393 
    52394 16 atoms, 2 residues, 1 model selected 
    52395 
    52396 > select add #27.2
    52397 
    52398 1374 atoms, 1381 bonds, 190 residues, 1 model selected 
    52399 
    52400 > select subtract #27.2
    52401 
    52402 Nothing selected 
    52403 
    52404 > hide #27.2#!1 atoms
    52405 
    52406 > show #!34 models
    52407 
    52408 > hide #!34 models
    52409 
    52410 > hide #27.2 models
    52411 
    52412 > hide #!1 models
    52413 
    52414 > show #!34 models
    52415 
    52416 > show #7 models
    52417 
    52418 > fitmap #7 inMap #34
    52419 
    52420 Fit molecule CopBprime_O55029.pdb (#7) to map
    52421 relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms 
    52422 average map value = 0.009017, steps = 44 
    52423 shifted from previous position = 0.0172 
    52424 rotated from previous position = 0.071 degrees 
    52425 atoms outside contour = 2264, contour level = 0.0046305 
    52426  
    52427 Position of CopBprime_O55029.pdb (#7) relative to
    52428 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52429 Matrix rotation and translation 
    52430 -0.13037522 -0.23222210 -0.96388547 237.21265190 
    52431 0.00507906 -0.97232699 0.23356887 213.62414076 
    52432 -0.99145171 0.02555596 0.12794681 275.48305004 
    52433 Axis -0.65667553 0.08702383 0.74913557 
    52434 Axis point 228.30486617 105.84568006 0.00000000 
    52435 Rotation angle (degrees) 170.88692890 
    52436 Shift along axis 69.19279888 
    52437  
    52438 
    52439 > fitmap #7 inMap #34
    52440 
    52441 Fit molecule CopBprime_O55029.pdb (#7) to map
    52442 relion_locres_filtered_20240326_GT.mrc (#34) using 6695 atoms 
    52443 average map value = 0.009016, steps = 44 
    52444 shifted from previous position = 0.00626 
    52445 rotated from previous position = 0.00774 degrees 
    52446 atoms outside contour = 2263, contour level = 0.0046305 
    52447  
    52448 Position of CopBprime_O55029.pdb (#7) relative to
    52449 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52450 Matrix rotation and translation 
    52451 -0.13036153 -0.23228328 -0.96387257 237.21353161 
    52452 0.00520514 -0.97231549 0.23361396 213.62027007 
    52453 -0.99145286 0.02543719 0.12796160 275.47804476 
    52454 Axis -0.65667642 0.08699973 0.74913759 
    52455 Axis point 228.29425794 105.86016341 0.00000000 
    52456 Rotation angle (degrees) 170.87970124 
    52457 Shift along axis 69.18333184 
    52458  
    52459 
    52460 > hide #!34 models
    52461 
    52462 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    52463 > dataset/Chimera sessions/20240709_leaf_fitting_v37_labelled.cxs"
    52464 
    52465 > close #2
    52466 
    52467 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    52468 > dataset/Structure files/alphafold/CopBprime_O55029.pdb"
    52469 
    52470 CopBprime_O55029.pdb title: 
    52471 Alphafold monomer V2.0 prediction for coatomer subunit β' (O55029) [more
    52472 info...] 
    52473  
    52474 Chain information for CopBprime_O55029.pdb #2 
    52475 --- 
    52476 Chain | Description | UniProt 
    52477 A | coatomer subunit β' | COPB2_MOUSE 1-905 
    52478  
    52479 
    52480 > color #2 cyan
    52481 
    52482 > ui tool show Matchmaker
    52483 
    52484 The cached device pixel ratio value was stale on window expose. Please file a
    52485 QTBUG which explains how to reproduce. 
    52486 
    52487 > matchmaker #2 to #7
    52488 
    52489 Parameters 
    52490 --- 
    52491 Chain pairing | bb 
    52492 Alignment algorithm | Needleman-Wunsch 
    52493 Similarity matrix | BLOSUM-62 
    52494 SS fraction | 0.3 
    52495 Gap open (HH/SS/other) | 18/18/6 
    52496 Gap extend | 1 
    52497 SS matrix |  |  | H | S | O 
    52498 ---|---|---|--- 
    52499 H | 6 | -9 | -6 
    52500 S |  | 6 | -6 
    52501 O |  |  | 4 
    52502 Iteration cutoff | 2 
    52503  
    52504 Matchmaker CopBprime_O55029.pdb, chain A (#7) with CopBprime_O55029.pdb, chain
    52505 A (#2), sequence alignment score = 4630.6 
    52506 RMSD between 838 pruned atom pairs is 0.000 angstroms; (across all 838 pairs:
    52507 0.000) 
    52508  
    52509 
    52510 > hide #2 models
    52511 
    52512 > show #2 models
    52513 
    52514 > hide #2 models
    52515 
    52516 > show #2 models
    52517 
    52518 > show #!34 models
    52519 
    52520 > hide #2 models
    52521 
    52522 > hide #!34 models
    52523 
    52524 > show #2 models
    52525 
    52526 > hide #7 models
    52527 
    52528 Drag select of 11 residues 
    52529 
    52530 > select up
    52531 
    52532 519 atoms, 525 bonds, 67 residues, 1 model selected 
    52533 
    52534 > delete sel
    52535 
    52536 > show #7 models
    52537 
    52538 > hide #7 models
    52539 
    52540 > show #7 models
    52541 
    52542 > hide #2 models
    52543 
    52544 > show #2 models
    52545 
    52546 Drag select of 414 residues 
    52547 
    52548 > select up
    52549 
    52550 3448 atoms, 3514 bonds, 436 residues, 2 models selected 
    52551 Drag select of 484 residues 
    52552 
    52553 > select up
    52554 
    52555 3988 atoms, 4064 bonds, 500 residues, 2 models selected 
    52556 
    52557 > combine sel
    52558 
    52559 Remapping chain ID 'A' in CopBprime_O55029.pdb #7 to 'B' 
    52560 
    52561 > select add #2
    52562 
    52563 8689 atoms, 8879 bonds, 1088 residues, 2 models selected 
    52564 
    52565 > select subtract #2
    52566 
    52567 1994 atoms, 2032 bonds, 250 residues, 1 model selected 
    52568 
    52569 > delete sel
    52570 
    52571 > hide #3 models
    52572 
    52573 > hide #2 models
    52574 
    52575 Drag select of 2 residues, 1 pseudobonds 
    52576 
    52577 > delete sel
    52578 
    52579 > show #3 models
    52580 
    52581 > hide #3 models
    52582 
    52583 > show #2 models
    52584 
    52585 > hide #2 models
    52586 
    52587 > hide #!7 models
    52588 
    52589 > show #!7 models
    52590 
    52591 > hide #!7 models
    52592 
    52593 > show #!7 models
    52594 
    52595 > hide #!7 models
    52596 
    52597 > show #!7 models
    52598 
    52599 > show #3 models
    52600 
    52601 > hide #3 models
    52602 
    52603 > show #3 models
    52604 
    52605 > show #2 models
    52606 
    52607 > hide #2 models
    52608 
    52609 > hide #3 models
    52610 
    52611 > hide #!7 models
    52612 
    52613 > show #2 models
    52614 
    52615 > hide #2 models
    52616 
    52617 > show #2 models
    52618 
    52619 > hide #2 models
    52620 
    52621 > show #2 models
    52622 
    52623 > hide #2 models
    52624 
    52625 > show #3 models
    52626 
    52627 > hide #3 models
    52628 
    52629 > show #3 models
    52630 
    52631 > hide #3 models
    52632 
    52633 > show #!7 models
    52634 
    52635 > hide #!7 models
    52636 
    52637 > show #3 models
    52638 
    52639 > show #!7 models
    52640 
    52641 > hide #!7 models
    52642 
    52643 > hide #3 models
    52644 
    52645 > show #3 models
    52646 
    52647 > hide #3 models
    52648 
    52649 > show #2 models
    52650 
    52651 > hide #2 models
    52652 
    52653 > show #!7 models
    52654 
    52655 > show #!34 models
    52656 
    52657 > fitmap #7 inMap #34
    52658 
    52659 Fit molecule CopBprime_O55029.pdb (#7) to map
    52660 relion_locres_filtered_20240326_GT.mrc (#34) using 4686 atoms 
    52661 average map value = 0.009331, steps = 56 
    52662 shifted from previous position = 0.857 
    52663 rotated from previous position = 4.01 degrees 
    52664 atoms outside contour = 1365, contour level = 0.0046305 
    52665  
    52666 Position of CopBprime_O55029.pdb (#7) relative to
    52667 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52668 Matrix rotation and translation 
    52669 -0.18382139 -0.18803254 -0.96480747 236.85450936 
    52670 0.00729281 -0.98176700 0.18994833 212.89973190 
    52671 -0.98293261 0.02788041 0.18184106 275.49974843 
    52672 Axis -0.63692579 0.07123166 0.76762725 
    52673 Axis point 224.08999267 105.52981372 0.00000000 
    52674 Rotation angle (degrees) 172.69063725 
    52675 Shift along axis 75.78756851 
    52676  
    52677 
    52678 > fitmap #7 inMap #34
    52679 
    52680 Fit molecule CopBprime_O55029.pdb (#7) to map
    52681 relion_locres_filtered_20240326_GT.mrc (#34) using 4686 atoms 
    52682 average map value = 0.009331, steps = 48 
    52683 shifted from previous position = 0.0294 
    52684 rotated from previous position = 0.0588 degrees 
    52685 atoms outside contour = 1364, contour level = 0.0046305 
    52686  
    52687 Position of CopBprime_O55029.pdb (#7) relative to
    52688 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52689 Matrix rotation and translation 
    52690 -0.18351764 -0.18857053 -0.96476029 236.87734116 
    52691 0.00658726 -0.98164233 0.19061723 212.90804390 
    52692 -0.98299434 0.02862650 0.18139084 275.47318612 
    52693 Axis -0.63704804 0.07170759 0.76748148 
    52694 Axis point 224.13935981 105.44289980 0.00000000 
    52695 Rotation angle (degrees) 172.69554744 
    52696 Shift along axis 75.78544446 
    52697  
    52698 
    52699 > fitmap #7 inMap #34
    52700 
    52701 Fit molecule CopBprime_O55029.pdb (#7) to map
    52702 relion_locres_filtered_20240326_GT.mrc (#34) using 4686 atoms 
    52703 average map value = 0.009331, steps = 56 
    52704 shifted from previous position = 0.857 
    52705 rotated from previous position = 4.01 degrees 
    52706 atoms outside contour = 1365, contour level = 0.0046305 
    52707  
    52708 Position of CopBprime_O55029.pdb (#7) relative to
    52709 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52710 Matrix rotation and translation 
    52711 -0.18382139 -0.18803254 -0.96480747 236.85450936 
    52712 0.00729281 -0.98176700 0.18994833 212.89973190 
    52713 -0.98293261 0.02788041 0.18184106 275.49974843 
    52714 Axis -0.63692579 0.07123166 0.76762725 
    52715 Axis point 224.08999267 105.52981372 0.00000000 
    52716 Rotation angle (degrees) 172.69063725 
    52717 Shift along axis 75.78756851 
    52718  
    52719 
    52720 > fitmap #7 inMap #34
    52721 
    52722 Fit molecule CopBprime_O55029.pdb (#7) to map
    52723 relion_locres_filtered_20240326_GT.mrc (#34) using 4686 atoms 
    52724 average map value = 0.009331, steps = 48 
    52725 shifted from previous position = 0.0294 
    52726 rotated from previous position = 0.0588 degrees 
    52727 atoms outside contour = 1364, contour level = 0.0046305 
    52728  
    52729 Position of CopBprime_O55029.pdb (#7) relative to
    52730 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52731 Matrix rotation and translation 
    52732 -0.18351764 -0.18857053 -0.96476029 236.87734116 
    52733 0.00658726 -0.98164233 0.19061723 212.90804390 
    52734 -0.98299434 0.02862650 0.18139084 275.47318612 
    52735 Axis -0.63704804 0.07170759 0.76748148 
    52736 Axis point 224.13935981 105.44289980 0.00000000 
    52737 Rotation angle (degrees) 172.69554744 
    52738 Shift along axis 75.78544446 
    52739  
    52740 
    52741 > fitmap #7 inMap #34
    52742 
    52743 Fit molecule CopBprime_O55029.pdb (#7) to map
    52744 relion_locres_filtered_20240326_GT.mrc (#34) using 4686 atoms 
    52745 average map value = 0.009331, steps = 48 
    52746 shifted from previous position = 0.00591 
    52747 rotated from previous position = 0.0108 degrees 
    52748 atoms outside contour = 1364, contour level = 0.0046305 
    52749  
    52750 Position of CopBprime_O55029.pdb (#7) relative to
    52751 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52752 Matrix rotation and translation 
    52753 -0.18348706 -0.18866650 -0.96474735 236.88099484 
    52754 0.00644898 -0.98161951 0.19073949 212.90869913 
    52755 -0.98300097 0.02877659 0.18133119 275.46732152 
    52756 Axis -0.63706082 0.07179834 0.76746238 
    52757 Axis point 224.14561608 105.42520113 0.00000000 
    52758 Rotation angle (degrees) 172.69695653 
    52759 Shift along axis 75.78969715 
    52760  
    52761 
    52762 > hide #!34 models
    52763 
    52764 > show #!34 models
    52765 
    52766 > hide #!34 models
    52767 
    52768 > show #3 models
    52769 
    52770 > hide #3 models
    52771 
    52772 > show #3 models
    52773 
    52774 > hide #3 models
    52775 
    52776 > show #3 models
    52777 
    52778 > hide #3 models
    52779 
    52780 > show #2 models
    52781 
    52782 > hide #2 models
    52783 
    52784 > show #2 models
    52785 
    52786 > hide #2 models
    52787 
    52788 > show #3 models
    52789 
    52790 > hide #!7 models
    52791 
    52792 Drag select of 1156 residues 
    52793 
    52794 > select up
    52795 
    52796 9356 atoms, 9578 bonds, 1170 residues, 1 model selected 
    52797 
    52798 > delete sel
    52799 
    52800 > show #!34 models
    52801 
    52802 > fitmap #3 inMap #34
    52803 
    52804 Fit molecule combination (#3) to map relion_locres_filtered_20240326_GT.mrc
    52805 (#34) using 4034 atoms 
    52806 average map value = 0.009676, steps = 72 
    52807 shifted from previous position = 1.07 
    52808 rotated from previous position = 3.24 degrees 
    52809 atoms outside contour = 1464, contour level = 0.0046305 
    52810  
    52811 Position of combination (#3) relative to
    52812 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52813 Matrix rotation and translation 
    52814 -0.09135641 -0.26647558 -0.95950236 236.85335835 
    52815 0.03080497 -0.96382670 0.26474354 213.36709311 
    52816 -0.99534168 -0.00537142 0.09626052 277.10719384 
    52817 Axis -0.66982079 0.08887299 0.73718498 
    52818 Axis point 229.97457226 109.33292722 0.00000000 
    52819 Rotation angle (degrees) 168.36757452 
    52820 Shift along axis 64.59252983 
    52821  
    52822 
    52823 > fitmap #3 inMap #34
    52824 
    52825 Fit molecule combination (#3) to map relion_locres_filtered_20240326_GT.mrc
    52826 (#34) using 4034 atoms 
    52827 average map value = 0.009675, steps = 48 
    52828 shifted from previous position = 0.0204 
    52829 rotated from previous position = 0.0825 degrees 
    52830 atoms outside contour = 1466, contour level = 0.0046305 
    52831  
    52832 Position of combination (#3) relative to
    52833 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52834 Matrix rotation and translation 
    52835 -0.09042542 -0.26652009 -0.95957818 236.89404424 
    52836 0.03189874 -0.96380625 0.26468846 213.38303781 
    52837 -0.99539224 -0.00667477 0.09565424 277.11938100 
    52838 Axis -0.67013594 0.08844341 0.73695019 
    52839 Axis point 230.02990386 109.49648079 0.00000000 
    52840 Rotation angle (degrees) 168.31863565 
    52841 Shift along axis 64.34428851 
    52842  
    52843 
    52844 > hide #!34 models
    52845 
    52846 > show #!7 models
    52847 
    52848 > show #2 models
    52849 
    52850 > hide #2 models
    52851 
    52852 > show #2 models
    52853 
    52854 > hide #2 models
    52855 
    52856 The cached device pixel ratio value was stale on window expose. Please file a
    52857 QTBUG which explains how to reproduce. 
    52858 
    52859 > close #2
    52860 
    52861 The cached device pixel ratio value was stale on window expose. Please file a
    52862 QTBUG which explains how to reproduce. 
    52863 
    52864 > rename #3 CopBprime_O55029.pdb
    52865 
    52866 > hide #!3 models
    52867 
    52868 > show #!3 models
    52869 
    52870 > hide #!3 models
    52871 
    52872 > show #!3 models
    52873 
    52874 > rename #3 CopBprime_O55029_solenoid.pdb
    52875 
    52876 > hide #!3 models
    52877 
    52878 > show #!3 models
    52879 
    52880 > hide #!7 models
    52881 
    52882 > show #!7 models
    52883 
    52884 > rename #7 CopBprime_O55029_beta_props.pdb
    52885 
    52886 > hide #!7 models
    52887 
    52888 > show #!7 models
    52889 
    52890 > hide #!7 models
    52891 
    52892 > show #!7 models
    52893 
    52894 > hide #!7 models
    52895 
    52896 > show #!7 models
    52897 
    52898 > hide #!3 models
    52899 
    52900 > show #!3 models
    52901 
    52902 > show #!34 models
    52903 
    52904 > hide #!34 models
    52905 
    52906 > hide #!3 models
    52907 
    52908 > hide #!7 models
    52909 
    52910 > show #!1 models
    52911 
    52912 > rename #1 CopA-F8WHL2_E320-V651.pdb
    52913 
    52914 > hide #!1 models
    52915 
    52916 > close #13
    52917 
    52918 > close #14
    52919 
    52920 > close #15
    52921 
    52922 > close #16
    52923 
    52924 > close #17
    52925 
    52926 > close #18
    52927 
    52928 > close #19
    52929 
    52930 > close #20
    52931 
    52932 > close #21
    52933 
    52934 > close #22
    52935 
    52936 > close #23
    52937 
    52938 > show #!1 models
    52939 
    52940 > hide #!1 models
    52941 
    52942 > show #!1 models
    52943 
    52944 > show #!34 models
    52945 
    52946 > fitmap #1 inMap #34
    52947 
    52948 Fit molecule CopA-F8WHL2_E320-V651.pdb (#1) to map
    52949 relion_locres_filtered_20240326_GT.mrc (#34) using 2653 atoms 
    52950 average map value = 0.008168, steps = 80 
    52951 shifted from previous position = 0.0284 
    52952 rotated from previous position = 0.0393 degrees 
    52953 atoms outside contour = 819, contour level = 0.0046305 
    52954  
    52955 Position of CopA-F8WHL2_E320-V651.pdb (#1) relative to
    52956 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52957 Matrix rotation and translation 
    52958 0.76766827 0.57618568 0.28052716 208.93708075 
    52959 -0.11090966 0.55059127 -0.82737434 282.32456434 
    52960 -0.63117706 0.60403586 0.48657600 267.49371213 
    52961 Axis 0.78180163 0.49795079 -0.37527486 
    52962 Axis point 0.00000000 -262.29142513 361.19565696 
    52963 Rotation angle (degrees) 66.27058784 
    52964 Shift along axis 203.54742588 
    52965  
    52966 
    52967 > fitmap #1 inMap #34
    52968 
    52969 Fit molecule CopA-F8WHL2_E320-V651.pdb (#1) to map
    52970 relion_locres_filtered_20240326_GT.mrc (#34) using 2653 atoms 
    52971 average map value = 0.008168, steps = 96 
    52972 shifted from previous position = 0.0317 
    52973 rotated from previous position = 0.0689 degrees 
    52974 atoms outside contour = 821, contour level = 0.0046305 
    52975  
    52976 Position of CopA-F8WHL2_E320-V651.pdb (#1) relative to
    52977 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52978 Matrix rotation and translation 
    52979 0.76760054 0.57646141 0.28014577 208.91467280 
    52980 -0.11057666 0.54964981 -0.82804462 282.29207163 
    52981 -0.63131784 0.60462991 0.48565467 267.45428422 
    52982 Axis 0.78213018 0.49758908 -0.37506998 
    52983 Axis point -0.00000000 -261.61679014 360.88280205 
    52984 Rotation angle (degrees) 66.33098692 
    52985 Shift along axis 203.54984830 
    52986  
    52987 
    52988 > fitmap #1 inMap #34
    52989 
    52990 Fit molecule CopA-F8WHL2_E320-V651.pdb (#1) to map
    52991 relion_locres_filtered_20240326_GT.mrc (#34) using 2653 atoms 
    52992 average map value = 0.008168, steps = 80 
    52993 shifted from previous position = 0.00676 
    52994 rotated from previous position = 0.0138 degrees 
    52995 atoms outside contour = 821, contour level = 0.0046305 
    52996  
    52997 Position of CopA-F8WHL2_E320-V651.pdb (#1) relative to
    52998 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    52999 Matrix rotation and translation 
    53000 0.76768046 0.57644333 0.27996392 208.90568347 
    53001 -0.11076225 0.54965468 -0.82801658 282.29416732 
    53002 -0.63118811 0.60464272 0.48580732 267.46074649 
    53003 Axis 0.78216631 0.49744725 -0.37518275 
    53004 Axis point 0.00000000 -261.62563490 360.97838193 
    53005 Rotation angle (degrees) 66.32355949 
    53006 Shift along axis 203.47878638 
    53007  
    53008 
    53009 > fitmap #1 inMap #34
    53010 
    53011 Fit molecule CopA-F8WHL2_E320-V651.pdb (#1) to map
    53012 relion_locres_filtered_20240326_GT.mrc (#34) using 2653 atoms 
    53013 average map value = 0.008168, steps = 80 
    53014 shifted from previous position = 0.0302 
    53015 rotated from previous position = 0.0497 degrees 
    53016 atoms outside contour = 819, contour level = 0.0046305 
    53017  
    53018 Position of CopA-F8WHL2_E320-V651.pdb (#1) relative to
    53019 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    53020 Matrix rotation and translation 
    53021 0.76758721 0.57639867 0.28031134 208.92856298 
    53022 -0.11102829 0.55030521 -0.82754873 282.32142277 
    53023 -0.63125478 0.60409333 0.48640379 267.48878305 
    53024 Axis 0.78182707 0.49781093 -0.37540739 
    53025 Axis point -0.00000000 -262.14374413 361.20627789 
    53026 Rotation angle (degrees) 66.28746428 
    53027 Shift along axis 203.47143225 
    53028  
    53029 
    53030 > hide #!1 models
    53031 
    53032 > show #27.2 models
    53033 
    53034 > fitmap #27.2 inMap #34
    53035 
    53036 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    53037 relion_locres_filtered_20240326_GT.mrc (#34) using 1374 atoms 
    53038 average map value = 0.009225, steps = 60 
    53039 shifted from previous position = 0.0586 
    53040 rotated from previous position = 0.642 degrees 
    53041 atoms outside contour = 514, contour level = 0.0046305 
    53042  
    53043 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    53044 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    53045 Matrix rotation and translation 
    53046 0.99061919 0.02011670 -0.13516267 -48.16359820 
    53047 0.01727947 0.96272535 0.26992837 -114.34526161 
    53048 0.13555460 -0.26973176 0.95334659 -30.33373192 
    53049 Axis -0.89382876 -0.44838384 -0.00469925 
    53050 Axis point 0.00000000 -153.28089944 245.53192643 
    53051 Rotation angle (degrees) 17.57062500 
    53052 Shift along axis 94.46312279 
    53053  
    53054 
    53055 > fitmap #27.2 inMap #34
    53056 
    53057 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    53058 relion_locres_filtered_20240326_GT.mrc (#34) using 1374 atoms 
    53059 average map value = 0.009225, steps = 48 
    53060 shifted from previous position = 0.00175 
    53061 rotated from previous position = 0.0198 degrees 
    53062 atoms outside contour = 515, contour level = 0.0046305 
    53063  
    53064 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    53065 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    53066 Matrix rotation and translation 
    53067 0.99060535 0.01990631 -0.13529518 -48.10906796 
    53068 0.01748321 0.96279489 0.26966709 -114.30676032 
    53069 0.13562958 -0.26949906 0.95340174 -30.37812537 
    53070 Axis -0.89352881 -0.44898790 -0.00401565 
    53071 Axis point 0.00000000 -153.75246581 245.44309919 
    53072 Rotation angle (degrees) 17.56010290 
    53073 Shift along axis 94.43117853 
    53074  
    53075 
    53076 > hide #27.2 models
    53077 
    53078 > show #!30 models
    53079 
    53080 > fitmap #27.2 inMap #34
    53081 
    53082 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    53083 relion_locres_filtered_20240326_GT.mrc (#34) using 1374 atoms 
    53084 average map value = 0.009229, steps = 60 
    53085 shifted from previous position = 0.0327 
    53086 rotated from previous position = 0.0399 degrees 
    53087 atoms outside contour = 510, contour level = 0.0046305 
    53088  
    53089 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    53090 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    53091 Matrix rotation and translation 
    53092 0.99066797 0.01990936 -0.13483544 -48.16065155 
    53093 0.01742655 0.96265237 0.27017905 -114.38533874 
    53094 0.13517875 -0.27000745 0.95332192 -30.28651744 
    53095 Axis -0.89447200 -0.44710507 -0.00411118 
    53096 Axis point 0.00000000 -153.26991275 246.05491552 
    53097 Rotation angle (degrees) 17.57526180 
    53098 Shift along axis 94.34513235 
    53099  
    53100 
    53101 > fitmap #27.2 inMap #34
    53102 
    53103 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    53104 relion_locres_filtered_20240326_GT.mrc (#34) using 1374 atoms 
    53105 average map value = 0.009225, steps = 76 
    53106 shifted from previous position = 0.0315 
    53107 rotated from previous position = 0.0318 degrees 
    53108 atoms outside contour = 515, contour level = 0.0046305 
    53109  
    53110 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    53111 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    53112 Matrix rotation and translation 
    53113 0.99069795 0.02037968 -0.13454454 -48.31506305 
    53114 0.01689558 0.96264976 0.27022208 -114.38942217 
    53115 0.13502631 -0.26998167 0.95335082 -30.29682417 
    53116 Axis -0.89476385 -0.44650236 -0.00577088 
    53117 Axis point 0.00000000 -152.71992024 246.09204308 
    53118 Rotation angle (degrees) 17.56992189 
    53119 Shift along axis 94.48055777 
    53120  
    53121 
    53122 > hide #!30 models
    53123 
    53124 > show #!4 models
    53125 
    53126 > hide #!4 models
    53127 
    53128 > show #!1 models
    53129 
    53130 > hide #!1 models
    53131 
    53132 > show #!1 models
    53133 
    53134 > hide #!1 models
    53135 
    53136 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    53137 > dataset/Structure files/alphafold/CopA-Q8CIE6.pdb"
    53138 
    53139 CopA-Q8CIE6.pdb title: 
    53140 Alphafold monomer V2.0 prediction for coatomer subunit α (Q8CIE6) [more
    53141 info...] 
    53142  
    53143 Chain information for CopA-Q8CIE6.pdb #2 
    53144 --- 
    53145 Chain | Description | UniProt 
    53146 A | coatomer subunit α | COPA_MOUSE 1-1224 
    53147  
    53148 
    53149 > color #1 #0038ffff
    53150 
    53151 > color #2 #004affff
    53152 
    53153 > ui tool show Matchmaker
    53154 
    53155 The cached device pixel ratio value was stale on window expose. Please file a
    53156 QTBUG which explains how to reproduce. 
    53157 
    53158 > matchmaker #2 to #1
    53159 
    53160 Parameters 
    53161 --- 
    53162 Chain pairing | bb 
    53163 Alignment algorithm | Needleman-Wunsch 
    53164 Similarity matrix | BLOSUM-62 
    53165 SS fraction | 0.3 
    53166 Gap open (HH/SS/other) | 18/18/6 
    53167 Gap extend | 1 
    53168 SS matrix |  |  | H | S | O 
    53169 ---|---|---|--- 
    53170 H | 6 | -9 | -6 
    53171 S |  | 6 | -6 
    53172 O |  |  | 4 
    53173 Iteration cutoff | 2 
    53174  
    53175 Matchmaker CopA-F8WHL2_E320-V651.pdb, chain A (#1) with CopA-Q8CIE6.pdb, chain
    53176 A (#2), sequence alignment score = 4988.1 
    53177 RMSD between 321 pruned atom pairs is 0.509 angstroms; (across all 323 pairs:
    53178 0.621) 
    53179  
    53180 
    53181 > hide #2 models
    53182 
    53183 > show #2 models
    53184 
    53185 > fitmap #2 inMap #34
    53186 
    53187 Fit molecule CopA-Q8CIE6.pdb (#2) to map
    53188 relion_locres_filtered_20240326_GT.mrc (#34) using 9742 atoms 
    53189 average map value = 0.005153, steps = 224 
    53190 shifted from previous position = 7.29 
    53191 rotated from previous position = 9.89 degrees 
    53192 atoms outside contour = 5755, contour level = 0.0046305 
    53193  
    53194 Position of CopA-Q8CIE6.pdb (#2) relative to
    53195 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    53196 Matrix rotation and translation 
    53197 -0.35043779 0.71123122 -0.60937961 201.62294206 
    53198 0.22926641 -0.56570149 -0.79209768 280.19300043 
    53199 -0.90809155 -0.41729124 0.03518175 263.45571687 
    53200 Axis 0.55142524 0.43947298 -0.70907948 
    53201 Axis point 235.27609784 200.07403859 0.00000000 
    53202 Rotation angle (degrees) 160.13211482 
    53203 Shift along axis 47.50618780 
    53204  
    53205 
    53206 > hide #!34 models
    53207 
    53208 > hide #2 models
    53209 
    53210 > show #2 models
    53211 
    53212 > show #!1 models
    53213 
    53214 > hide #2 models
    53215 
    53216 > show #2 models
    53217 
    53218 > hide #!1 models
    53219 
    53220 Drag select of 275 residues 
    53221 
    53222 > select up
    53223 
    53224 2492 atoms, 2565 bonds, 306 residues, 1 model selected 
    53225 
    53226 > delete sel
    53227 
    53228 Drag select of 11 residues, 1 pseudobonds 
    53229 
    53230 > delete sel
    53231 
    53232 Drag select of 1 residues 
    53233 
    53234 > delete sel
    53235 
    53236 > select clear
    53237 
    53238 [Repeated 1 time(s)]Drag select of 1 pseudobonds 
    53239 
    53240 > delete sel
    53241 
    53242 Drag select of 3 residues 
    53243 Drag select of 1 pseudobonds 
    53244 
    53245 > delete sel
    53246 
    53247 > fitmap #2 inMap #34
    53248 
    53249 Fit molecule CopA-Q8CIE6.pdb (#2) to map
    53250 relion_locres_filtered_20240326_GT.mrc (#34) using 7152 atoms 
    53251 average map value = 0.003986, steps = 112 
    53252 shifted from previous position = 5.7 
    53253 rotated from previous position = 8.46 degrees 
    53254 atoms outside contour = 4702, contour level = 0.0046305 
    53255  
    53256 Position of CopA-Q8CIE6.pdb (#2) relative to
    53257 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    53258 Matrix rotation and translation 
    53259 -0.30646756 0.79102650 -0.52948532 203.77067889 
    53260 0.27471428 -0.45908197 -0.84485254 282.23864504 
    53261 -0.91137791 -0.40437707 -0.07661254 261.25682109 
    53262 Axis 0.56562448 0.49039689 -0.66300818 
    53263 Axis point 250.43692295 213.54811926 0.00000000 
    53264 Rotation angle (degrees) 157.08463717 
    53265 Shift along axis 80.45122939 
    53266  
    53267 
    53268 > show #!34 models
    53269 
    53270 > hide #!34 models
    53271 
    53272 Drag select of 251 residues 
    53273 
    53274 > select up
    53275 
    53276 2175 atoms, 2216 bonds, 272 residues, 1 model selected 
    53277 
    53278 > delete sel
    53279 
    53280 Drag select of 37 residues, 2 pseudobonds 
    53281 
    53282 > select up
    53283 
    53284 939 atoms, 958 bonds, 2 pseudobonds, 127 residues, 2 models selected 
    53285 
    53286 > delete sel
    53287 
    53288 > fitmap #2 inMap #34
    53289 
    53290 Fit molecule CopA-Q8CIE6.pdb (#2) to map
    53291 relion_locres_filtered_20240326_GT.mrc (#34) using 4038 atoms 
    53292 average map value = 0.007489, steps = 224 
    53293 shifted from previous position = 10.5 
    53294 rotated from previous position = 31.8 degrees 
    53295 atoms outside contour = 1662, contour level = 0.0046305 
    53296  
    53297 Position of CopA-Q8CIE6.pdb (#2) relative to
    53298 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    53299 Matrix rotation and translation 
    53300 -0.09445487 0.80442057 -0.58650305 199.66806763 
    53301 -0.25064251 -0.58937509 -0.76799436 283.33369896 
    53302 -0.96346075 0.07446179 0.25729134 274.84434220 
    53303 Axis 0.60099022 0.26891357 -0.75265945 
    53304 Axis point 287.34471669 134.75932293 0.00000000 
    53305 Rotation angle (degrees) 135.50154190 
    53306 Shift along axis -10.67336194 
    53307  
    53308 
    53309 > show #!34 models
    53310 
    53311 > hide #!34 models
    53312 
    53313 Drag select of 10 residues 
    53314 
    53315 > select up
    53316 
    53317 372 atoms, 384 bonds, 48 residues, 1 model selected 
    53318 
    53319 > delete sel
    53320 
    53321 > fitmap #2 inMap #34
    53322 
    53323 Fit molecule CopA-Q8CIE6.pdb (#2) to map
    53324 relion_locres_filtered_20240326_GT.mrc (#34) using 3666 atoms 
    53325 average map value = 0.00767, steps = 104 
    53326 shifted from previous position = 0.153 
    53327 rotated from previous position = 1.3 degrees 
    53328 atoms outside contour = 1479, contour level = 0.0046305 
    53329  
    53330 Position of CopA-Q8CIE6.pdb (#2) relative to
    53331 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    53332 Matrix rotation and translation 
    53333 -0.07487981 0.81210513 -0.57868668 199.53827458 
    53334 -0.24898707 -0.57716149 -0.77774678 283.44604356 
    53335 -0.96560782 0.08584797 0.24542142 274.88322004 
    53336 Axis 0.60740961 0.27214109 -0.74631950 
    53337 Axis point 291.40138479 134.89086090 0.00000000 
    53338 Rotation angle (degrees) 134.69316763 
    53339 Shift along axis -6.81192531 
    53340  
    53341 
    53342 > show #27.2 models
    53343 
    53344 > fitmap #27.2 inMap #34
    53345 
    53346 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    53347 relion_locres_filtered_20240326_GT.mrc (#34) using 1374 atoms 
    53348 average map value = 0.009228, steps = 64 
    53349 shifted from previous position = 0.0262 
    53350 rotated from previous position = 0.036 degrees 
    53351 atoms outside contour = 512, contour level = 0.0046305 
    53352  
    53353 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    53354 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    53355 Matrix rotation and translation 
    53356 0.99063502 0.02023016 -0.13502960 -48.18174625 
    53357 0.01721852 0.96255674 0.27053291 -114.44046146 
    53358 0.13544657 -0.27032438 0.95319408 -30.22348955 
    53359 Axis -0.89438466 -0.44727092 -0.00498018 
    53360 Axis point 0.00000000 -152.62018173 245.77537926 
    53361 Rotation angle (degrees) 17.59957350 
    53362 Shift along axis 94.42942384 
    53363  
    53364 
    53365 > fitmap #4 inMap #34
    53366 
    53367 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    53368 relion_locres_filtered_20240326_GT.mrc (#34) using 4053 atoms 
    53369 average map value = 0.00875, steps = 44 
    53370 shifted from previous position = 0.00377 
    53371 rotated from previous position = 0.0117 degrees 
    53372 atoms outside contour = 1354, contour level = 0.0046305 
    53373  
    53374 Position of CopB_Q9JIF7.pdb (#4) relative to
    53375 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    53376 Matrix rotation and translation 
    53377 -0.02335202 -0.73057438 0.68243370 220.10855531 
    53378 -0.03197812 0.68281640 0.72988983 241.56842405 
    53379 -0.99921573 -0.00477854 -0.03930754 273.35150591 
    53380 Axis -0.37414388 0.85641205 0.35577347 
    53381 Axis point 256.49039751 0.00000000 -59.50264811 
    53382 Rotation angle (degrees) 100.94820766 
    53383 Shift along axis 221.78105418 
    53384  
    53385 
    53386 > hide #27.2 models
    53387 
    53388 Drag select of 123 residues 
    53389 
    53390 > select up
    53391 
    53392 1026 atoms, 1036 bonds, 128 residues, 1 model selected 
    53393 
    53394 > select up
    53395 
    53396 3658 atoms, 3722 bonds, 458 residues, 1 model selected 
    53397 
    53398 > select down
    53399 
    53400 1026 atoms, 1036 bonds, 128 residues, 1 model selected 
    53401 Drag select of 79 residues 
    53402 
    53403 > select up
    53404 
    53405 646 atoms, 653 bonds, 81 residues, 1 model selected 
    53406 
    53407 > delete se
    53408 
    53409 Missing or invalid "atoms" argument: invalid atoms specifier 
    53410 
    53411 > delete sel
    53412 
    53413 Drag select of 52 residues 
    53414 
    53415 > delete sel
    53416 
    53417 Drag select of 2 residues 
    53418 
    53419 > delete sel
    53420 
    53421 > show #27.2 models
    53422 
    53423 > fitmap #2 inMap #34
    53424 
    53425 Fit molecule CopA-Q8CIE6.pdb (#2) to map
    53426 relion_locres_filtered_20240326_GT.mrc (#34) using 2593 atoms 
    53427 average map value = 0.008274, steps = 80 
    53428 shifted from previous position = 1.58 
    53429 rotated from previous position = 22.4 degrees 
    53430 atoms outside contour = 777, contour level = 0.0046305 
    53431  
    53432 Position of CopA-Q8CIE6.pdb (#2) relative to
    53433 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    53434 Matrix rotation and translation 
    53435 -0.26641990 0.73256583 -0.62639264 199.66098996 
    53436 0.08848925 -0.62854670 -0.77272162 281.92857678 
    53437 -0.95978648 -0.26129744 0.10263314 268.24975358 
    53438 Axis 0.57629484 0.37568257 -0.72577329 
    53439 Axis point 250.18950057 180.64614574 0.00000000 
    53440 Rotation angle (degrees) 153.65868773 
    53441 Shift along axis 26.29074612 
    53442  
    53443 
    53444 > show #!34 models
    53445 
    53446 > hide #!34 models
    53447 
    53448 > show #!1 models
    53449 
    53450 > hide #!2 models
    53451 
    53452 > show #!2 models
    53453 
    53454 > hide #!2 models
    53455 
    53456 > show #!2 models
    53457 
    53458 > hide #!2 models
    53459 
    53460 > show #!2 models
    53461 
    53462 > fitmap #2 inMap #34
    53463 
    53464 Fit molecule CopA-Q8CIE6.pdb (#2) to map
    53465 relion_locres_filtered_20240326_GT.mrc (#34) using 2593 atoms 
    53466 average map value = 0.008274, steps = 104 
    53467 shifted from previous position = 0.0138 
    53468 rotated from previous position = 0.0479 degrees 
    53469 atoms outside contour = 775, contour level = 0.0046305 
    53470  
    53471 Position of CopA-Q8CIE6.pdb (#2) relative to
    53472 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    53473 Matrix rotation and translation 
    53474 -0.26623863 0.73210066 -0.62701325 199.63781715 
    53475 0.08894234 -0.62905756 -0.77225375 281.92254246 
    53476 -0.95979490 -0.26137180 0.10236468 268.25573305 
    53477 Axis 0.57646911 0.37550425 -0.72572717 
    53478 Axis point 250.15657378 180.66177451 0.00000000 
    53479 Rotation angle (degrees) 153.69732633 
    53480 Shift along axis 26.26767435 
    53481  
    53482 
    53483 > fitmap #1 inMap #34
    53484 
    53485 Fit molecule CopA-F8WHL2_E320-V651.pdb (#1) to map
    53486 relion_locres_filtered_20240326_GT.mrc (#34) using 2653 atoms 
    53487 average map value = 0.008168, steps = 104 
    53488 shifted from previous position = 0.00499 
    53489 rotated from previous position = 0.0484 degrees 
    53490 atoms outside contour = 820, contour level = 0.0046305 
    53491  
    53492 Position of CopA-F8WHL2_E320-V651.pdb (#1) relative to
    53493 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    53494 Matrix rotation and translation 
    53495 0.76783420 0.57630098 0.27983535 208.92325977 
    53496 -0.11086061 0.54973428 -0.82795057 282.31302208 
    53497 -0.63098381 0.60470604 0.48599386 267.47771771 
    53498 Axis 0.78224350 0.49731552 -0.37519646 
    53499 Axis point 0.00000000 -261.66507065 361.06339025 
    53500 Rotation angle (degrees) 66.31042451 
    53501 Shift along axis 203.47081525 
    53502  
    53503 
    53504 > fitmap #1 inMap #34
    53505 
    53506 Fit molecule CopA-F8WHL2_E320-V651.pdb (#1) to map
    53507 relion_locres_filtered_20240326_GT.mrc (#34) using 2653 atoms 
    53508 average map value = 0.008168, steps = 104 
    53509 shifted from previous position = 0.0303 
    53510 rotated from previous position = 0.0451 degrees 
    53511 atoms outside contour = 822, contour level = 0.0046305 
    53512  
    53513 Position of CopA-F8WHL2_E320-V651.pdb (#1) relative to
    53514 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    53515 Matrix rotation and translation 
    53516 0.76755968 0.57631068 0.28056752 208.92584722 
    53517 -0.11036621 0.55000896 -0.82783419 282.29363072 
    53518 -0.63140433 0.60444697 0.48576993 267.45684961 
    53519 Axis 0.78199659 0.49791822 -0.37491171 
    53520 Axis point 0.00000000 -261.83279019 360.82969852 
    53521 Rotation angle (degrees) 66.31742467 
    53522 Shift along axis 203.66573518 
    53523  
    53524 
    53525 > hide #!2 models
    53526 
    53527 > rename #2 CopA-Q8CIE6_E320-V642.pdb
    53528 
    53529 > show #!2 models
    53530 
    53531 > show #!34 models
    53532 
    53533 > hide #!34 models
    53534 
    53535 > show #!34 models
    53536 
    53537 > hide #!1 models
    53538 
    53539 > close #1
    53540 
    53541 > hide #!2 models
    53542 
    53543 > show #!2 models
    53544 
    53545 > hide #!34 models
    53546 
    53547 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    53548 > dataset/Structure files/relion_locres_filtered_20240326_GT.mrc"
    53549 
    53550 Opened relion_locres_filtered_20240326_GT.mrc as #1, grid size 292,292,292,
    53551 pixel 1.71, shown at level 0.00473, step 2, values float32 
    53552 
    53553 The cached device pixel ratio value was stale on window expose. Please file a
    53554 QTBUG which explains how to reproduce. 
    53555 
    53556 > volume #1 step 1
    53557 
    53558 > color #1 #b2b2b2b8 models
    53559 
    53560 > color #1 #b2b2b2a5 models
    53561 
    53562 > color #1 #b2b2b2a6 models
    53563 
    53564 > select add #1
    53565 
    53566 2 models selected 
    53567 
    53568 > show #!34 models
    53569 
    53570 > select #1
    53571 
    53572 2 models selected 
    53573 
    53574 > ui mousemode right "translate selected models"
    53575 
    53576 > view matrix models #1,1,0,0,65.367,0,1,0,76.181,0,0,1,75.337
    53577 
    53578 > fitmap #1 inMap #34
    53579 
    53580 Fit map relion_locres_filtered_20240326_GT.mrc in map
    53581 relion_locres_filtered_20240326_GT.mrc using 247907 points 
    53582 correlation = 1, correlation about mean = 1, overlap = 26.95 
    53583 steps = 128, shift = 2.55, angle = 0.976 degrees 
    53584  
    53585 Position of relion_locres_filtered_20240326_GT.mrc (#1) relative to
    53586 relion_locres_filtered_20240326_GT.mrc (#34) coordinates: 
    53587 Matrix rotation and translation 
    53588 0.99999999 -0.00012506 -0.00008620 0.05725254 
    53589 0.00012506 0.99999999 -0.00002205 -0.01636628 
    53590 0.00008620 0.00002204 1.00000000 -0.02226246 
    53591 Axis 0.14360813 -0.56161595 0.81484000 
    53592 Axis point 134.16098000 458.61542456 0.00000000 
    53593 Rotation angle (degrees) 0.00879372 
    53594 Shift along axis -0.00072685 
    53595  
    53596 
    53597 > select subtract #1
    53598 
    53599 Nothing selected 
    53600 
    53601 > hide #!1 models
    53602 
    53603 > show #!1 models
    53604 
    53605 > hide #!1 models
    53606 
    53607 > show #!1 models
    53608 
    53609 > hide #!34 models
    53610 
    53611 > close #33
    53612 
    53613 > close #34
    53614 
    53615 > fitmap #2 inMap #1
    53616 
    53617 Fit molecule CopA-Q8CIE6_E320-V642.pdb (#2) to map
    53618 relion_locres_filtered_20240326_GT.mrc (#1) using 2593 atoms 
    53619 average map value = 0.008275, steps = 80 
    53620 shifted from previous position = 0.0314 
    53621 rotated from previous position = 0.0382 degrees 
    53622 atoms outside contour = 799, contour level = 0.0047281 
    53623  
    53624 Position of CopA-Q8CIE6_E320-V642.pdb (#2) relative to
    53625 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    53626 Matrix rotation and translation 
    53627 -0.26596303 0.73243454 -0.62674022 199.65991761 
    53628 0.08887658 -0.62875650 -0.77250645 281.94914037 
    53629 -0.95987740 -0.26116068 0.10212971 268.25628469 
    53630 Axis 0.57654299 0.37561258 -0.72561241 
    53631 Axis point 250.24124687 180.68157744 0.00000000 
    53632 Rotation angle (degrees) 153.67524455 
    53633 Shift along axis 26.36608210 
    53634  
    53635 
    53636 > fitmap #2 inMap #1
    53637 
    53638 Fit molecule CopA-Q8CIE6_E320-V642.pdb (#2) to map
    53639 relion_locres_filtered_20240326_GT.mrc (#1) using 2593 atoms 
    53640 average map value = 0.008274, steps = 76 
    53641 shifted from previous position = 0.0239 
    53642 rotated from previous position = 0.0376 degrees 
    53643 atoms outside contour = 796, contour level = 0.0047281 
    53644  
    53645 Position of CopA-Q8CIE6_E320-V642.pdb (#2) relative to
    53646 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    53647 Matrix rotation and translation 
    53648 -0.26646975 0.73245553 -0.62650042 199.65898109 
    53649 0.08848498 -0.62866718 -0.77262409 281.93091751 
    53650 -0.95977304 -0.26131682 0.10270947 268.25264116 
    53651 Axis 0.57628640 0.37562634 -0.72580910 
    53652 Axis point 250.17259609 180.64036100 0.00000000 
    53653 Rotation angle (degrees) 153.66475727 
    53654 Shift along axis 26.26122582 
    53655  
    53656 
    53657 > fitmap #27.2 inMap #1
    53658 
    53659 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    53660 relion_locres_filtered_20240326_GT.mrc (#1) using 1374 atoms 
    53661 average map value = 0.009228, steps = 48 
    53662 shifted from previous position = 0.00494 
    53663 rotated from previous position = 0.0217 degrees 
    53664 atoms outside contour = 522, contour level = 0.0047281 
    53665  
    53666 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    53667 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    53668 Matrix rotation and translation 
    53669 0.99064341 0.02019889 -0.13497277 -48.22271731 
    53670 0.01718831 0.96264614 0.27021654 -114.37202644 
    53671 0.13538909 -0.27000818 0.95329186 -30.26466585 
    53672 Axis -0.89425082 -0.44753841 -0.00498351 
    53673 Axis point 0.00000000 -152.84510082 245.68531982 
    53674 Rotation angle (degrees) 17.58103461 
    53675 Shift along axis 94.45990387 
    53676  
    53677 
    53678 > show #!30 models
    53679 
    53680 > fitmap #27.2 inMap #1
    53681 
    53682 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) to map
    53683 relion_locres_filtered_20240326_GT.mrc (#1) using 1374 atoms 
    53684 average map value = 0.009229, steps = 48 
    53685 shifted from previous position = 0.00899 
    53686 rotated from previous position = 0.0407 degrees 
    53687 atoms outside contour = 520, contour level = 0.0047281 
    53688  
    53689 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif B (#27.2) relative to
    53690 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    53691 Matrix rotation and translation 
    53692 0.99072816 0.02017173 -0.13435328 -48.32702490 
    53693 0.01709208 0.96255277 0.27055504 -114.41852065 
    53694 0.13477969 -0.27034287 0.95328336 -30.20567122 
    53695 Axis -0.89528515 -0.44546438 -0.00509740 
    53696 Axis point -0.00000000 -152.52705056 246.38057257 
    53697 Rotation angle (degrees) 17.58265741 
    53698 Shift along axis 94.38981318 
    53699  
    53700 
    53701 > color #2 #0024ffff
    53702 
    53703 > hide #!1 models
    53704 
    53705 > hide #!2 models
    53706 
    53707 > show #!2 models
    53708 
    53709 > hide #!2 models
    53710 
    53711 > show #!2 models
    53712 
    53713 > hide #27.2 models
    53714 
    53715 > show #27.2 models
    53716 
    53717 > hide #!30 models
    53718 
    53719 > show #!30 models
    53720 
    53721 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    53722 > dataset/Chimera sessions/20240709_leaf_fitting_v38_labelled.cxs"
    53723 
    53724 > hide #!30 models
    53725 
    53726 > hide #27.2 models
    53727 
    53728 > hide #!2 models
    53729 
    53730 > show #27.1 models
    53731 
    53732 > show #!1 models
    53733 
    53734 > fitmap #27.1 inMap #1
    53735 
    53736 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    53737 relion_locres_filtered_20240326_GT.mrc (#1) using 6538 atoms 
    53738 average map value = 0.009129, steps = 48 
    53739 shifted from previous position = 0.00683 
    53740 rotated from previous position = 0.0266 degrees 
    53741 atoms outside contour = 2197, contour level = 0.0047281 
    53742  
    53743 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    53744 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    53745 Matrix rotation and translation 
    53746 0.99555627 0.00362167 0.09409890 -80.58908006 
    53747 -0.00513584 0.99986113 0.01585408 -75.38043922 
    53748 -0.09402842 -0.01626690 0.99543661 -68.59564412 
    53749 Axis -0.16812812 0.98469881 -0.04583865 
    53750 Axis point -802.28218112 0.00000000 921.33841380 
    53751 Rotation angle (degrees) 5.48155549 
    53752 Shift along axis -57.53340625 
    53753  
    53754 
    53755 > fitmap #27.1 inMap #1
    53756 
    53757 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    53758 relion_locres_filtered_20240326_GT.mrc (#1) using 6538 atoms 
    53759 average map value = 0.009129, steps = 44 
    53760 shifted from previous position = 0.0323 
    53761 rotated from previous position = 0.0101 degrees 
    53762 atoms outside contour = 2198, contour level = 0.0047281 
    53763  
    53764 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    53765 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    53766 Matrix rotation and translation 
    53767 0.99557143 0.00359514 0.09393932 -80.56899965 
    53768 -0.00511342 0.99986009 0.01592667 -75.42008740 
    53769 -0.09386892 -0.01633649 0.99545052 -68.57856091 
    53770 Axis -0.16913120 0.98453568 -0.04565237 
    53771 Axis point -803.29062368 0.00000000 923.31930146 
    53772 Rotation angle (degrees) 5.47313917 
    53773 Shift along axis -57.49626144 
    53774  
    53775 
    53776 > fitmap #27.1 inMap #1
    53777 
    53778 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    53779 relion_locres_filtered_20240326_GT.mrc (#1) using 6538 atoms 
    53780 average map value = 0.009129, steps = 44 
    53781 shifted from previous position = 0.0303 
    53782 rotated from previous position = 0.0146 degrees 
    53783 atoms outside contour = 2193, contour level = 0.0047281 
    53784  
    53785 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    53786 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    53787 Matrix rotation and translation 
    53788 0.99555366 0.00344087 0.09413328 -80.57178421 
    53789 -0.00495767 0.99986155 0.01588429 -75.39610791 
    53790 -0.09406559 -0.01628034 0.99543288 -68.59713070 
    53791 Axis -0.16830226 0.98475537 -0.04394559 
    53792 Axis point -800.91827714 0.00000000 921.21427079 
    53793 Rotation angle (degrees) 5.48333046 
    53794 Shift along axis -57.67176744 
    53795  
    53796 
    53797 > show #!3 models
    53798 
    53799 > hide #!1 models
    53800 
    53801 > show #!7 models
    53802 
    53803 > hide #!3 models
    53804 
    53805 > show #!3 models
    53806 
    53807 > hide #!3 models
    53808 
    53809 > show #!3 models
    53810 
    53811 > hide #!3 models
    53812 
    53813 > show #!3 models
    53814 
    53815 > hide #!3 models
    53816 
    53817 > show #!3 models
    53818 
    53819 > hide #!7 models
    53820 
    53821 > show #!7 models
    53822 
    53823 > fitmap #3 inMap #1
    53824 
    53825 Fit molecule CopBprime_O55029_solenoid.pdb (#3) to map
    53826 relion_locres_filtered_20240326_GT.mrc (#1) using 4034 atoms 
    53827 average map value = 0.009675, steps = 60 
    53828 shifted from previous position = 0.0141 
    53829 rotated from previous position = 0.0255 degrees 
    53830 atoms outside contour = 1482, contour level = 0.0047281 
    53831  
    53832 Position of CopBprime_O55029_solenoid.pdb (#3) relative to
    53833 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    53834 Matrix rotation and translation 
    53835 -0.09015386 -0.26641133 -0.95963393 236.89212744 
    53836 0.03176550 -0.96383663 0.26459383 213.37817753 
    53837 -0.99542113 -0.00662910 0.09535628 277.14045439 
    53838 Axis -0.67024420 0.08843708 0.73685249 
    53839 Axis point 230.08374453 109.47948044 0.00000000 
    53840 Rotation angle (degrees) 168.32667230 
    53841 Shift along axis 64.30660495 
    53842  
    53843 
    53844 > fitmap #3 inMap #1
    53845 
    53846 Fit molecule CopBprime_O55029_solenoid.pdb (#3) to map
    53847 relion_locres_filtered_20240326_GT.mrc (#1) using 4034 atoms 
    53848 average map value = 0.009675, steps = 60 
    53849 shifted from previous position = 0.0282 
    53850 rotated from previous position = 0.0175 degrees 
    53851 atoms outside contour = 1480, contour level = 0.0047281 
    53852  
    53853 Position of CopBprime_O55029_solenoid.pdb (#3) relative to
    53854 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    53855 Matrix rotation and translation 
    53856 -0.09041325 -0.26644336 -0.95960064 236.86593363 
    53857 0.03161617 -0.96382925 0.26463862 213.37297517 
    53858 -0.99540236 -0.00641206 0.09556685 277.11110769 
    53859 Axis -0.67015073 0.08851685 0.73692793 
    53860 Axis point 230.03664950 109.45387438 0.00000000 
    53861 Rotation angle (degrees) 168.33254007 
    53862 Shift along axis 64.36213991 
    53863  
    53864 
    53865 > fitmap #7 inMap #1
    53866 
    53867 Fit molecule CopBprime_O55029_beta_props.pdb (#7) to map
    53868 relion_locres_filtered_20240326_GT.mrc (#1) using 4686 atoms 
    53869 average map value = 0.009331, steps = 48 
    53870 shifted from previous position = 0.0253 
    53871 rotated from previous position = 0.0467 degrees 
    53872 atoms outside contour = 1384, contour level = 0.0047281 
    53873  
    53874 Position of CopBprime_O55029_beta_props.pdb (#7) relative to
    53875 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    53876 Matrix rotation and translation 
    53877 -0.18358574 -0.18831682 -0.96479689 236.87476151 
    53878 0.00701091 -0.98170427 0.19028287 212.90846072 
    53879 -0.98297870 0.02816912 0.18154718 275.48584443 
    53880 Axis -0.63701813 0.07144452 0.76753084 
    53881 Axis point 224.12322365 105.49859907 0.00000000 
    53882 Rotation angle (degrees) 172.68962442 
    53883 Shift along axis 75.76150644 
    53884  
    53885 
    53886 > fitmap #7 inMap #1
    53887 
    53888 Fit molecule CopBprime_O55029_beta_props.pdb (#7) to map
    53889 relion_locres_filtered_20240326_GT.mrc (#1) using 4686 atoms 
    53890 average map value = 0.009331, steps = 44 
    53891 shifted from previous position = 0.00835 
    53892 rotated from previous position = 0.0341 degrees 
    53893 atoms outside contour = 1384, contour level = 0.0047281 
    53894  
    53895 Position of CopBprime_O55029_beta_props.pdb (#7) relative to
    53896 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    53897 Matrix rotation and translation 
    53898 -0.18347865 -0.18860756 -0.96476047 236.87355158 
    53899 0.00656557 -0.98163461 0.19065775 212.91058430 
    53900 -0.98300177 0.02864742 0.18134731 275.47613721 
    53901 Axis -0.63706303 0.07172910 0.76746702 
    53902 Axis point 224.14249023 105.44125947 0.00000000 
    53903 Rotation angle (degrees) 172.69483148 
    53904 Shift along axis 75.78735231 
    53905  
    53906 
    53907 > fitmap #27.1 inMap #1
    53908 
    53909 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    53910 relion_locres_filtered_20240326_GT.mrc (#1) using 6538 atoms 
    53911 average map value = 0.009129, steps = 44 
    53912 shifted from previous position = 0.0113 
    53913 rotated from previous position = 0.014 degrees 
    53914 atoms outside contour = 2194, contour level = 0.0047281 
    53915  
    53916 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    53917 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    53918 Matrix rotation and translation 
    53919 0.99555672 0.00366599 0.09409244 -80.59191202 
    53920 -0.00517297 0.99986215 0.01577705 -75.36752085 
    53921 -0.09402163 -0.01619369 0.99543844 -68.60347468 
    53922 Axis -0.16737196 0.98480729 -0.04627338 
    53923 Axis point -802.66772468 0.00000000 921.00087225 
    53924 Rotation angle (degrees) 5.48056245 
    53925 Shift along axis -57.55914293 
    53926  
    53927 
    53928 > fitmap #27.1 inMap #1
    53929 
    53930 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    53931 relion_locres_filtered_20240326_GT.mrc (#1) using 6538 atoms 
    53932 average map value = 0.009129, steps = 40 
    53933 shifted from previous position = 0.032 
    53934 rotated from previous position = 0.0219 degrees 
    53935 atoms outside contour = 2192, contour level = 0.0047281 
    53936  
    53937 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    53938 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    53939 Matrix rotation and translation 
    53940 0.99555535 0.00345103 0.09411503 -80.58052940 
    53941 -0.00498896 0.99985777 0.01611059 -75.45310217 
    53942 -0.09404605 -0.01650852 0.99543097 -68.56033750 
    53943 Axis -0.17064313 0.98434316 -0.04415287 
    53944 Axis point -800.82402146 0.00000000 922.61688892 
    53945 Rotation angle (degrees) 5.48452907 
    53946 Shift along axis -57.49409541 
    53947  
    53948 
    53949 > hide #27.1 models
    53950 
    53951 > hide #!7 models
    53952 
    53953 > hide #!3 models
    53954 
    53955 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    53956 > dataset/Structure files/alphafold/CopA-Q8CIE6.pdb"
    53957 
    53958 CopA-Q8CIE6.pdb title: 
    53959 Alphafold monomer V2.0 prediction for coatomer subunit α (Q8CIE6) [more
    53960 info...] 
    53961  
    53962 Chain information for CopA-Q8CIE6.pdb #13 
    53963 --- 
    53964 Chain | Description | UniProt 
    53965 A | coatomer subunit α | COPA_MOUSE 1-1224 
    53966  
    53967 
    53968 > color #13 #0038ffff
    53969 
    53970 > ui tool show Matchmaker
    53971 
    53972 The cached device pixel ratio value was stale on window expose. Please file a
    53973 QTBUG which explains how to reproduce. 
    53974 
    53975 > matchmaker #13 to #2
    53976 
    53977 Parameters 
    53978 --- 
    53979 Chain pairing | bb 
    53980 Alignment algorithm | Needleman-Wunsch 
    53981 Similarity matrix | BLOSUM-62 
    53982 SS fraction | 0.3 
    53983 Gap open (HH/SS/other) | 18/18/6 
    53984 Gap extend | 1 
    53985 SS matrix |  |  | H | S | O 
    53986 ---|---|---|--- 
    53987 H | 6 | -9 | -6 
    53988 S |  | 6 | -6 
    53989 O |  |  | 4 
    53990 Iteration cutoff | 2 
    53991  
    53992 Matchmaker CopA-Q8CIE6_E320-V642.pdb, chain A (#2) with CopA-Q8CIE6.pdb, chain
    53993 A (#13), sequence alignment score = 5036.7 
    53994 RMSD between 324 pruned atom pairs is 0.000 angstroms; (across all 324 pairs:
    53995 0.000) 
    53996  
    53997 
    53998 > combine #13
    53999 
    54000 [Repeated 1 time(s)]
    54001 
    54002 > hide #15 models
    54003 
    54004 > hide #14 models
    54005 
    54006 > show #!2 models
    54007 
    54008 > hide #!2 models
    54009 
    54010 > show #!2 models
    54011 
    54012 > hide #!2 models
    54013 
    54014 > hide #13 models
    54015 
    54016 > show #13 models
    54017 
    54018 > show #!1 models
    54019 
    54020 > hide #!1 models
    54021 
    54022 > show #!1 models
    54023 
    54024 > hide #!1 models
    54025 
    54026 > ui mousemode right select
    54027 
    54028 Drag select of 311 residues 
    54029 
    54030 > select up
    54031 
    54032 3114 atoms, 3179 bonds, 399 residues, 1 model selected 
    54033 
    54034 > delete sel
    54035 
    54036 > show #!1 models
    54037 
    54038 > hide #!1 models
    54039 
    54040 > show #!1 models
    54041 
    54042 > hide #!1 models
    54043 
    54044 Drag select of 297 residues 
    54045 
    54046 > select up
    54047 
    54048 2613 atoms, 2687 bonds, 321 residues, 1 model selected 
    54049 
    54050 > delete sel
    54051 
    54052 Drag select of 3 residues 
    54053 
    54054 > select up
    54055 
    54056 37 atoms, 37 bonds, 4 residues, 1 model selected 
    54057 
    54058 > delete sel
    54059 
    54060 > fitmap #13 inMap #1
    54061 
    54062 Fit molecule CopA-Q8CIE6.pdb (#13) to map
    54063 relion_locres_filtered_20240326_GT.mrc (#1) using 3978 atoms 
    54064 average map value = 0.007481, steps = 228 
    54065 shifted from previous position = 5.68 
    54066 rotated from previous position = 21.7 degrees 
    54067 atoms outside contour = 1678, contour level = 0.0047281 
    54068  
    54069 Position of CopA-Q8CIE6.pdb (#13) relative to
    54070 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54071 Matrix rotation and translation 
    54072 -0.09946351 0.80564030 -0.58399547 199.48908893 
    54073 -0.24922291 -0.58836882 -0.76922693 283.37506930 
    54074 -0.96332494 0.06903504 0.25930525 274.83807073 
    54075 Axis 0.59886391 0.27099730 -0.75360631 
    54076 Axis point 286.50297224 135.30530391 0.00000000 
    54077 Rotation angle (degrees) 135.58287597 
    54078 Shift along axis -10.85900981 
    54079  
    54080 
    54081 > show #!1 models
    54082 
    54083 > show #!3 models
    54084 
    54085 > hide #!3 models
    54086 
    54087 > hide #!1 models
    54088 
    54089 > show #!1 models
    54090 
    54091 > hide #!1 models
    54092 
    54093 > show #!2 models
    54094 
    54095 > show #!1 models
    54096 
    54097 > hide #!13 models
    54098 
    54099 > show #!13 models
    54100 
    54101 > hide #!13 models
    54102 
    54103 > hide #!1 models
    54104 
    54105 > hide #!2 models
    54106 
    54107 > show #!13 models
    54108 
    54109 Drag select of 204 residues 
    54110 
    54111 > select up
    54112 
    54113 1878 atoms, 1912 bonds, 233 residues, 1 model selected 
    54114 Drag select of 70 residues 
    54115 Drag select of 226 residues 
    54116 
    54117 > select up
    54118 
    54119 2021 atoms, 2057 bonds, 254 residues, 1 model selected 
    54120 
    54121 > select clear
    54122 
    54123 Drag select of 254 residues 
    54124 Drag select of 238 residues 
    54125 Drag select of 262 residues 
    54126 
    54127 > select up
    54128 
    54129 2188 atoms, 2230 bonds, 274 residues, 1 model selected 
    54130 
    54131 > select down
    54132 
    54133 2088 atoms, 262 residues, 1 model selected 
    54134 Drag select of 71 residues 
    54135 
    54136 > select clear
    54137 
    54138 Drag select of 228 residues 
    54139 
    54140 > select up
    54141 
    54142 1999 atoms, 2036 bonds, 251 residues, 1 model selected 
    54143 
    54144 > delete sel
    54145 
    54146 Drag select of 15 residues, 1 pseudobonds 
    54147 
    54148 > delete sel
    54149 
    54150 > show #!1 models
    54151 
    54152 > fitmap #13 inMap #1
    54153 
    54154 Fit molecule CopA-Q8CIE6.pdb (#13) to map
    54155 relion_locres_filtered_20240326_GT.mrc (#1) using 1865 atoms 
    54156 average map value = 0.00897, steps = 56 
    54157 shifted from previous position = 0.674 
    54158 rotated from previous position = 3.69 degrees 
    54159 atoms outside contour = 684, contour level = 0.0047281 
    54160  
    54161 Position of CopA-Q8CIE6.pdb (#13) relative to
    54162 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54163 Matrix rotation and translation 
    54164 -0.13654802 0.80145366 -0.58225997 199.09573463 
    54165 -0.29788921 -0.59378120 -0.74745295 281.94987931 
    54166 -0.94478392 0.07138574 0.31982404 271.93620355 
    54167 Axis 0.57749602 0.25567446 -0.77532504 
    54168 Axis point 278.04684340 128.75122066 0.00000000 
    54169 Rotation angle (degrees) 134.84995391 
    54170 Shift along axis -23.77456835 
    54171  
    54172 
    54173 > fitmap #13 inMap #1
    54174 
    54175 Fit molecule CopA-Q8CIE6.pdb (#13) to map
    54176 relion_locres_filtered_20240326_GT.mrc (#1) using 1865 atoms 
    54177 average map value = 0.00897, steps = 48 
    54178 shifted from previous position = 0.0041 
    54179 rotated from previous position = 0.0587 degrees 
    54180 atoms outside contour = 683, contour level = 0.0047281 
    54181  
    54182 Position of CopA-Q8CIE6.pdb (#13) relative to
    54183 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54184 Matrix rotation and translation 
    54185 -0.13748732 0.80118616 -0.58240705 199.09730314 
    54186 -0.29755557 -0.59424011 -0.74722110 281.94423583 
    54187 -0.94475284 0.07056504 0.32009788 271.93191939 
    54188 Axis 0.57720938 0.25575071 -0.77551331 
    54189 Axis point 277.87079304 128.81627672 0.00000000 
    54190 Rotation angle (degrees) 134.89540566 
    54191 Shift along axis -23.85855294 
    54192  
    54193 
    54194 > hide #!1 models
    54195 
    54196 Drag select of 12 residues 
    54197 
    54198 > select up
    54199 
    54200 372 atoms, 384 bonds, 48 residues, 1 model selected 
    54201 
    54202 > delete sel
    54203 
    54204 > show #!1 models
    54205 
    54206 > fitmap #13 inMap #1
    54207 
    54208 Fit molecule CopA-Q8CIE6.pdb (#13) to map
    54209 relion_locres_filtered_20240326_GT.mrc (#1) using 1493 atoms 
    54210 average map value = 0.009858, steps = 64 
    54211 shifted from previous position = 0.412 
    54212 rotated from previous position = 2.61 degrees 
    54213 atoms outside contour = 506, contour level = 0.0047281 
    54214  
    54215 Position of CopA-Q8CIE6.pdb (#13) relative to
    54216 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54217 Matrix rotation and translation 
    54218 -0.09655165 0.81642437 -0.56932331 198.81758171 
    54219 -0.30234192 -0.56902489 -0.76472220 282.29081333 
    54220 -0.94829697 0.09829511 0.30177960 272.22690948 
    54221 Axis 0.58993851 0.25905756 -0.76476254 
    54222 Axis point 285.98011714 127.74194415 0.00000000 
    54223 Rotation angle (degrees) 132.99217470 
    54224 Shift along axis -17.76922692 
    54225  
    54226 
    54227 > rename #13 CopA-Q8CIE6_solenoid.pdb
    54228 
    54229 > hide #!1 models
    54230 
    54231 > show #!1 models
    54232 
    54233 > hide #!13 models
    54234 
    54235 > show #!13 models
    54236 
    54237 > hide #!1 models
    54238 
    54239 > show #14 models
    54240 
    54241 > hide #!13 models
    54242 
    54243 Drag select of 535 residues 
    54244 
    54245 > select up
    54246 
    54247 4425 atoms, 4514 bonds, 565 residues, 1 model selected 
    54248 
    54249 > delete sel
    54250 
    54251 Drag select of 2 residues 
    54252 
    54253 > delete sel
    54254 
    54255 > fitmap #14 inMap #1
    54256 
    54257 Fit molecule copy of CopA-Q8CIE6.pdb (#14) to map
    54258 relion_locres_filtered_20240326_GT.mrc (#1) using 5301 atoms 
    54259 average map value = 0.008461, steps = 68 
    54260 shifted from previous position = 3.21 
    54261 rotated from previous position = 8.56 degrees 
    54262 atoms outside contour = 1732, contour level = 0.0047281 
    54263  
    54264 Position of copy of CopA-Q8CIE6.pdb (#14) relative to
    54265 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54266 Matrix rotation and translation 
    54267 -0.33497523 0.69483088 -0.63639739 200.55601777 
    54268 0.21403454 -0.60164836 -0.76955082 281.25327405 
    54269 -0.91759512 -0.39399149 0.05281949 264.17163778 
    54270 Axis 0.55905496 0.41858895 -0.71571003 
    54271 Axis point 235.37583132 196.39849704 0.00000000 
    54272 Rotation angle (degrees) 160.37347442 
    54273 Shift along axis 40.78105937 
    54274  
    54275 
    54276 > show #!1 models
    54277 
    54278 > hide #!1 models
    54279 
    54280 Drag select of 50 residues 
    54281 
    54282 > select up
    54283 
    54284 487 atoms, 495 bonds, 60 residues, 1 model selected 
    54285 Drag select of 66 residues 
    54286 Drag select of 58 residues 
    54287 
    54288 > select up
    54289 
    54290 538 atoms, 548 bonds, 66 residues, 1 model selected 
    54291 
    54292 > delete sel
    54293 
    54294 > fitmap #14 inMap #1
    54295 
    54296 Fit molecule copy of CopA-Q8CIE6.pdb (#14) to map
    54297 relion_locres_filtered_20240326_GT.mrc (#1) using 4763 atoms 
    54298 average map value = 0.008718, steps = 44 
    54299 shifted from previous position = 0.272 
    54300 rotated from previous position = 0.784 degrees 
    54301 atoms outside contour = 1499, contour level = 0.0047281 
    54302  
    54303 Position of copy of CopA-Q8CIE6.pdb (#14) relative to
    54304 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54305 Matrix rotation and translation 
    54306 -0.34429351 0.69720481 -0.62878251 201.11062000 
    54307 0.21642490 -0.59275352 -0.77575996 281.02073780 
    54308 -0.91357662 -0.40317331 0.05318871 263.97597983 
    54309 Axis 0.55475542 0.42403849 -0.71584760 
    54310 Axis point 234.64506404 197.20196587 0.00000000 
    54311 Rotation angle (degrees) 160.37809947 
    54312 Shift along axis 41.76424549 
    54313  
    54314 
    54315 > show #!1 models
    54316 
    54317 > hide #!1 models
    54318 
    54319 > show #!30 models
    54320 
    54321 > hide #!30 models
    54322 
    54323 > show #27.2 models
    54324 
    54325 > hide #27.2 models
    54326 
    54327 > show #!2 models
    54328 
    54329 > hide #!2 models
    54330 
    54331 > show #27.2 models
    54332 
    54333 > hide #27.2 models
    54334 
    54335 > show #!30 models
    54336 
    54337 > fitmap #14 inMap #1
    54338 
    54339 Fit molecule copy of CopA-Q8CIE6.pdb (#14) to map
    54340 relion_locres_filtered_20240326_GT.mrc (#1) using 4763 atoms 
    54341 average map value = 0.008718, steps = 28 
    54342 shifted from previous position = 0.0214 
    54343 rotated from previous position = 0.012 degrees 
    54344 atoms outside contour = 1498, contour level = 0.0047281 
    54345  
    54346 Position of copy of CopA-Q8CIE6.pdb (#14) relative to
    54347 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54348 Matrix rotation and translation 
    54349 -0.34444666 0.69707488 -0.62884267 201.10502206 
    54350 0.21646045 -0.59281472 -0.77570329 281.00582538 
    54351 -0.91351047 -0.40330797 0.05330391 263.96548545 
    54352 Axis 0.55470027 0.42402602 -0.71589772 
    54353 Axis point 234.60444415 197.19298857 0.00000000 
    54354 Rotation angle (degrees) 160.38655922 
    54355 Shift along axis 41.73450133 
    54356  
    54357 
    54358 > fitmap #14 inMap #1
    54359 
    54360 Fit molecule copy of CopA-Q8CIE6.pdb (#14) to map
    54361 relion_locres_filtered_20240326_GT.mrc (#1) using 4763 atoms 
    54362 average map value = 0.008718, steps = 40 
    54363 shifted from previous position = 0.0258 
    54364 rotated from previous position = 0.0246 degrees 
    54365 atoms outside contour = 1501, contour level = 0.0047281 
    54366  
    54367 Position of copy of CopA-Q8CIE6.pdb (#14) relative to
    54368 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54369 Matrix rotation and translation 
    54370 -0.34410034 0.69730151 -0.62878101 201.10848078 
    54371 0.21633810 -0.59277765 -0.77576574 281.02540295 
    54372 -0.91366995 -0.40297054 0.05312211 263.97796969 
    54373 Axis 0.55482862 0.42399832 -0.71581466 
    54374 Axis point 234.67905251 197.19172890 0.00000000 
    54375 Rotation angle (degrees) 160.36936225 
    54376 Shift along axis 41.77574043 
    54377  
    54378 
    54379 > hide #!14 models
    54380 
    54381 > show #!14 models
    54382 
    54383 > show #!1 models
    54384 
    54385 > close #15
    54386 
    54387 > rename #14 CopA-Q8CIE6_beta_props.pdb
    54388 
    54389 > show #!13 models
    54390 
    54391 > hide #!13 models
    54392 
    54393 > hide #!14 models
    54394 
    54395 > hide #!30 models
    54396 
    54397 > hide #!1 models
    54398 
    54399 > show #!4 models
    54400 
    54401 > show #32.1 models
    54402 
    54403 > hide #32.1 models
    54404 
    54405 > show #32.1 models
    54406 
    54407 > hide #!4 models
    54408 
    54409 > show #!4 models
    54410 
    54411 > fitmap #4 inMap #1
    54412 
    54413 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    54414 relion_locres_filtered_20240326_GT.mrc (#1) using 4053 atoms 
    54415 average map value = 0.00875, steps = 60 
    54416 shifted from previous position = 0.023 
    54417 rotated from previous position = 0.0058 degrees 
    54418 atoms outside contour = 1377, contour level = 0.0047281 
    54419  
    54420 Position of CopB_Q9JIF7.pdb (#4) relative to
    54421 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54422 Matrix rotation and translation 
    54423 -0.02339990 -0.73051856 0.68249182 220.12357711 
    54424 -0.03191624 0.68287664 0.72983618 241.57823865 
    54425 -0.99921659 -0.00470448 -0.03929465 273.35256704 
    54426 Axis -0.37407791 0.85643995 0.35577567 
    54427 Axis point 256.48319067 0.00000000 -59.50468413 
    54428 Rotation angle (degrees) 100.94747093 
    54429 Shift along axis 221.80608061 
    54430  
    54431 
    54432 > fitmap #4 inMap #1
    54433 
    54434 Fit molecule CopB_Q9JIF7.pdb (#4) to map
    54435 relion_locres_filtered_20240326_GT.mrc (#1) using 4053 atoms 
    54436 average map value = 0.00875, steps = 64 
    54437 shifted from previous position = 0.00896 
    54438 rotated from previous position = 0.0162 degrees 
    54439 atoms outside contour = 1374, contour level = 0.0047281 
    54440  
    54441 Position of CopB_Q9JIF7.pdb (#4) relative to
    54442 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54443 Matrix rotation and translation 
    54444 -0.02354741 -0.73035997 0.68265645 220.12625836 
    54445 -0.03198603 0.68304660 0.72967406 241.57922012 
    54446 -0.99921089 -0.00465353 -0.03944530 273.35505958 
    54447 Axis -0.37397413 0.85653171 0.35566386 
    54448 Axis point 256.45874274 0.00000000 -59.45008610 
    54449 Rotation angle (degrees) 100.95121196 
    54450 Shift along axis 221.82125205 
    54451  
    54452 
    54453 > fitmap #32.1 inMap #1
    54454 
    54455 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map
    54456 relion_locres_filtered_20240326_GT.mrc (#1) using 2991 atoms 
    54457 average map value = 0.01065, steps = 44 
    54458 shifted from previous position = 0.0361 
    54459 rotated from previous position = 0.0316 degrees 
    54460 atoms outside contour = 1091, contour level = 0.0047281 
    54461  
    54462 Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to
    54463 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54464 Matrix rotation and translation 
    54465 0.99551010 -0.07940155 0.05152702 253.49799044 
    54466 0.06873037 0.98065549 0.18327835 192.94826820 
    54467 -0.06508284 -0.17891398 0.98170974 287.90534252 
    54468 Axis -0.88703328 0.28558535 0.36278502 
    54469 Axis point 0.00000000 1839.78826465 -960.34310326 
    54470 Rotation angle (degrees) 11.78029424 
    54471 Shift along axis -65.31021219 
    54472  
    54473 
    54474 > fitmap #32.1 inMap #1
    54475 
    54476 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map
    54477 relion_locres_filtered_20240326_GT.mrc (#1) using 2991 atoms 
    54478 average map value = 0.01065, steps = 60 
    54479 shifted from previous position = 0.0121 
    54480 rotated from previous position = 0.0265 degrees 
    54481 atoms outside contour = 1092, contour level = 0.0047281 
    54482  
    54483 Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to
    54484 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54485 Matrix rotation and translation 
    54486 0.99552361 -0.07944603 0.05119636 253.49390279 
    54487 0.06881249 0.98059002 0.18359751 192.95535330 
    54488 -0.06478873 -0.17925271 0.98166740 287.92411424 
    54489 Axis -0.88766221 0.28374126 0.36269367 
    54490 Axis point 0.00000000 1837.48799202 -958.46116796 
    54491 Rotation angle (degrees) 11.79351762 
    54492 Shift along axis -65.83930804 
    54493  
    54494 
    54495 > fitmap #32.1 inMap #1
    54496 
    54497 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map
    54498 relion_locres_filtered_20240326_GT.mrc (#1) using 2991 atoms 
    54499 average map value = 0.01065, steps = 76 
    54500 shifted from previous position = 0.0193 
    54501 rotated from previous position = 0.025 degrees 
    54502 atoms outside contour = 1088, contour level = 0.0047281 
    54503  
    54504 Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to
    54505 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54506 Matrix rotation and translation 
    54507 0.99551654 -0.07955168 0.05116976 253.50960352 
    54508 0.06894836 0.98065708 0.18318793 192.96250485 
    54509 -0.06475290 -0.17883854 0.98174530 287.91044751 
    54510 Axis -0.88708136 0.28404783 0.36387289 
    54511 Axis point 0.00000000 1840.79041662 -960.25690300 
    54512 Rotation angle (degrees) 11.77417540 
    54513 Shift along axis -65.31025602 
    54514  
    54515 
    54516 > fitmap #32.1 inMap #1
    54517 
    54518 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map
    54519 relion_locres_filtered_20240326_GT.mrc (#1) using 2991 atoms 
    54520 average map value = 0.01065, steps = 60 
    54521 shifted from previous position = 0.0129 
    54522 rotated from previous position = 0.0138 degrees 
    54523 atoms outside contour = 1089, contour level = 0.0047281 
    54524  
    54525 Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to
    54526 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54527 Matrix rotation and translation 
    54528 0.99552608 -0.07947362 0.05110542 253.51297695 
    54529 0.06886907 0.98062310 0.18339952 192.96033883 
    54530 -0.06469058 -0.17905942 0.98170915 287.90881591 
    54531 Axis -0.88750914 0.28353557 0.36322871 
    54532 Axis point 0.00000000 1839.18692996 -959.39691372 
    54533 Rotation angle (degrees) 11.78267869 
    54534 Shift along axis -65.70721611 
    54535  
    54536 
    54537 > fitmap #32.1 inMap #1
    54538 
    54539 Fit molecule 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) to map
    54540 relion_locres_filtered_20240326_GT.mrc (#1) using 2991 atoms 
    54541 average map value = 0.01065, steps = 60 
    54542 shifted from previous position = 0.0205 
    54543 rotated from previous position = 0.0186 degrees 
    54544 atoms outside contour = 1092, contour level = 0.0047281 
    54545  
    54546 Position of 5mu7_Thermophila_beta_deltaCOPI.cif A (#32.1) relative to
    54547 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54548 Matrix rotation and translation 
    54549 0.99552600 -0.07933918 0.05131543 253.49679161 
    54550 0.06868605 0.98059953 0.18359410 192.94992631 
    54551 -0.06488609 -0.17924805 0.98166182 287.91648514 
    54552 Axis -0.88770813 0.28429178 0.36214978 
    54553 Axis point 0.00000000 1837.50194689 -958.84713846 
    54554 Rotation angle (degrees) 11.79263263 
    54555 Shift along axis -65.90819220 
    54556  
    54557 
    54558 > hide #32.1 models
    54559 
    54560 > show #!1 models
    54561 
    54562 > hide #!1 models
    54563 
    54564 > show #!1 models
    54565 
    54566 > hide #!4 models
    54567 
    54568 > show #32.1 models
    54569 
    54570 > hide #32.1 models
    54571 
    54572 > show #!4 models
    54573 
    54574 > rename #4 CopB_Q9JIF7_P395-L953.pdb
    54575 
    54576 > hide #!4 models
    54577 
    54578 > show #!4 models
    54579 
    54580 > hide #!1 models
    54581 
    54582 > show #!1 models
    54583 
    54584 > hide #!1 models
    54585 
    54586 > show #!1 models
    54587 
    54588 > hide #!4 models
    54589 
    54590 > show #!4 models
    54591 
    54592 > hide #!4 models
    54593 
    54594 > hide #!1 models
    54595 
    54596 > show #!3 models
    54597 
    54598 > show #!7 models
    54599 
    54600 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    54601 > dataset/Structure files/alphafold/CopB_ Q9JIF7.pdb"
    54602 
    54603 CopB_ Q9JIF7.pdb title: 
    54604 Alphafold monomer V2.0 prediction for coatomer subunit β (Q9JIF7) [more
    54605 info...] 
    54606  
    54607 Chain information for CopB_ Q9JIF7.pdb #15 
    54608 --- 
    54609 Chain | Description | UniProt 
    54610 A | coatomer subunit β | COPB_MOUSE 1-953 
    54611  
    54612 
    54613 > color #15 #076000ff
    54614 
    54615 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    54616 > dataset/Structure files/alphafold/CopB_ Q9JIF7.pdb"
    54617 
    54618 CopB_ Q9JIF7.pdb title: 
    54619 Alphafold monomer V2.0 prediction for coatomer subunit β (Q9JIF7) [more
    54620 info...] 
    54621  
    54622 Chain information for CopB_ Q9JIF7.pdb #16 
    54623 --- 
    54624 Chain | Description | UniProt 
    54625 A | coatomer subunit β | COPB_MOUSE 1-953 
    54626  
    54627 
    54628 > color #16 #076000ff
    54629 
    54630 > hide #!3 models
    54631 
    54632 > hide #!7 models
    54633 
    54634 > ui tool show Matchmaker
    54635 
    54636 The cached device pixel ratio value was stale on window expose. Please file a
    54637 QTBUG which explains how to reproduce. 
    54638 
    54639 > matchmaker #15 to #4
    54640 
    54641 Parameters 
    54642 --- 
    54643 Chain pairing | bb 
    54644 Alignment algorithm | Needleman-Wunsch 
    54645 Similarity matrix | BLOSUM-62 
    54646 SS fraction | 0.3 
    54647 Gap open (HH/SS/other) | 18/18/6 
    54648 Gap extend | 1 
    54649 SS matrix |  |  | H | S | O 
    54650 ---|---|---|--- 
    54651 H | 6 | -9 | -6 
    54652 S |  | 6 | -6 
    54653 O |  |  | 4 
    54654 Iteration cutoff | 2 
    54655  
    54656 Matchmaker CopB_Q9JIF7_P395-L953.pdb, chain A (#4) with CopB_ Q9JIF7.pdb,
    54657 chain A (#15), sequence alignment score = 4184.9 
    54658 RMSD between 418 pruned atom pairs is 0.845 angstroms; (across all 520 pairs:
    54659 2.356) 
    54660  
    54661 
    54662 > ui tool show Matchmaker
    54663 
    54664 The cached device pixel ratio value was stale on window expose. Please file a
    54665 QTBUG which explains how to reproduce. 
    54666 
    54667 > matchmaker #16 to #2
    54668 
    54669 Parameters 
    54670 --- 
    54671 Chain pairing | bb 
    54672 Alignment algorithm | Needleman-Wunsch 
    54673 Similarity matrix | BLOSUM-62 
    54674 SS fraction | 0.3 
    54675 Gap open (HH/SS/other) | 18/18/6 
    54676 Gap extend | 1 
    54677 SS matrix |  |  | H | S | O 
    54678 ---|---|---|--- 
    54679 H | 6 | -9 | -6 
    54680 S |  | 6 | -6 
    54681 O |  |  | 4 
    54682 Iteration cutoff | 2 
    54683  
    54684 Matchmaker CopA-Q8CIE6_E320-V642.pdb, chain A (#2) with CopB_ Q9JIF7.pdb,
    54685 chain A (#16), sequence alignment score = 5 
    54686 Fewer than 3 residues aligned; cannot match CopA-Q8CIE6_E320-V642.pdb, chain A
    54687 with CopB_ Q9JIF7.pdb, chain A 
    54688 
    54689 > ui tool show Matchmaker
    54690 
    54691 The cached device pixel ratio value was stale on window expose. Please file a
    54692 QTBUG which explains how to reproduce. 
    54693 
    54694 > matchmaker #16 to #4
    54695 
    54696 Parameters 
    54697 --- 
    54698 Chain pairing | bb 
    54699 Alignment algorithm | Needleman-Wunsch 
    54700 Similarity matrix | BLOSUM-62 
    54701 SS fraction | 0.3 
    54702 Gap open (HH/SS/other) | 18/18/6 
    54703 Gap extend | 1 
    54704 SS matrix |  |  | H | S | O 
    54705 ---|---|---|--- 
    54706 H | 6 | -9 | -6 
    54707 S |  | 6 | -6 
    54708 O |  |  | 4 
    54709 Iteration cutoff | 2 
    54710  
    54711 Matchmaker CopB_Q9JIF7_P395-L953.pdb, chain A (#4) with CopB_ Q9JIF7.pdb,
    54712 chain A (#16), sequence alignment score = 4184.9 
    54713 RMSD between 418 pruned atom pairs is 0.845 angstroms; (across all 520 pairs:
    54714 2.356) 
    54715  
    54716 
    54717 > hide #15 models
    54718 
    54719 > show #15 models
    54720 
    54721 > hide #15 models
    54722 
    54723 > hide #16 models
    54724 
    54725 > show #!4 models
    54726 
    54727 > show #15 models
    54728 
    54729 > show #16 models
    54730 
    54731 > hide #16 models
    54732 
    54733 > hide #15 models
    54734 
    54735 > show #16 models
    54736 
    54737 > hide #!4 models
    54738 
    54739 > show #!1 models
    54740 
    54741 > hide #16 models
    54742 
    54743 > show #16 models
    54744 
    54745 > hide #16 models
    54746 
    54747 > hide #!1 models
    54748 
    54749 > show #15 models
    54750 
    54751 > show #!1 models
    54752 
    54753 > hide #!1 models
    54754 
    54755 > show #!1 models
    54756 
    54757 > hide #15 models
    54758 
    54759 > show #15 models
    54760 
    54761 > hide #!1 models
    54762 
    54763 > show #!1 models
    54764 
    54765 > hide #!1 models
    54766 
    54767 > show #32.1 models
    54768 
    54769 > hide #32.1 models
    54770 
    54771 > show #32.1 models
    54772 
    54773 > hide #32.1 models
    54774 
    54775 > show #32.1 models
    54776 
    54777 > hide #32.1 models
    54778 
    54779 > show #32.1 models
    54780 
    54781 > hide #32.1 models
    54782 
    54783 Drag select of 91 residues 
    54784 
    54785 > select up
    54786 
    54787 886 atoms, 896 bonds, 116 residues, 1 model selected 
    54788 Drag select of 42 residues 
    54789 Drag select of 58 residues 
    54790 
    54791 > select up
    54792 
    54793 562 atoms, 567 bonds, 73 residues, 1 model selected 
    54794 
    54795 > delete sel
    54796 
    54797 Drag select of 34 residues, 1 pseudobonds 
    54798 
    54799 > select up
    54800 
    54801 376 atoms, 382 bonds, 1 pseudobond, 48 residues, 2 models selected 
    54802 
    54803 > delete sel
    54804 
    54805 > show #!1 models
    54806 
    54807 > fitmap #15 inMap #1
    54808 
    54809 Fit molecule CopB_ Q9JIF7.pdb (#15) to map
    54810 relion_locres_filtered_20240326_GT.mrc (#1) using 6563 atoms 
    54811 average map value = 0.007851, steps = 132 
    54812 shifted from previous position = 8.19 
    54813 rotated from previous position = 7.85 degrees 
    54814 atoms outside contour = 3176, contour level = 0.0047281 
    54815  
    54816 Position of CopB_ Q9JIF7.pdb (#15) relative to
    54817 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54818 Matrix rotation and translation 
    54819 -0.01844824 -0.74284748 0.66920646 220.14509666 
    54820 -0.03147128 0.66942014 0.74221710 241.70022532 
    54821 -0.99933439 -0.00736819 -0.03572798 272.50039049 
    54822 Axis -0.38192670 0.85015048 0.36245850 
    54823 Axis point 257.63491425 0.00000000 -62.53223112 
    54824 Rotation angle (degrees) 101.09159635 
    54825 Shift along axis 220.17235598 
    54826  
    54827 
    54828 > hide #!1 models
    54829 
    54830 Drag select of 24 residues 
    54831 
    54832 > select up
    54833 
    54834 303 atoms, 304 bonds, 40 residues, 1 model selected 
    54835 
    54836 > select up
    54837 
    54838 6563 atoms, 6664 bonds, 832 residues, 1 model selected 
    54839 
    54840 > select down
    54841 
    54842 303 atoms, 304 bonds, 40 residues, 1 model selected 
    54843 Drag select of 33 residues 
    54844 
    54845 > select up
    54846 
    54847 424 atoms, 427 bonds, 54 residues, 1 model selected 
    54848 Drag select of 6 residues 
    54849 Drag select of 93 residues 
    54850 
    54851 > select up
    54852 
    54853 943 atoms, 955 bonds, 123 residues, 1 model selected 
    54854 Drag select of 108 residues 
    54855 
    54856 > select down
    54857 
    54858 828 atoms, 108 residues, 1 model selected 
    54859 
    54860 > select up
    54861 
    54862 984 atoms, 997 bonds, 130 residues, 1 model selected 
    54863 
    54864 > select up
    54865 
    54866 6563 atoms, 6664 bonds, 832 residues, 1 model selected 
    54867 
    54868 > select down
    54869 
    54870 984 atoms, 997 bonds, 130 residues, 1 model selected 
    54871 
    54872 > select clear
    54873 
    54874 Drag select of 114 residues 
    54875 
    54876 > select up
    54877 
    54878 930 atoms, 945 bonds, 122 residues, 1 model selected 
    54879 
    54880 > delete sel
    54881 
    54882 Drag select of 3 residues 
    54883 
    54884 > delete sel
    54885 
    54886 > show #!1 models
    54887 
    54888 > fitmap #15 inMap #1
    54889 
    54890 Fit molecule CopB_ Q9JIF7.pdb (#15) to map
    54891 relion_locres_filtered_20240326_GT.mrc (#1) using 5609 atoms 
    54892 average map value = 0.008594, steps = 72 
    54893 shifted from previous position = 0.0768 
    54894 rotated from previous position = 0.628 degrees 
    54895 atoms outside contour = 2493, contour level = 0.0047281 
    54896  
    54897 Position of CopB_ Q9JIF7.pdb (#15) relative to
    54898 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54899 Matrix rotation and translation 
    54900 -0.02232557 -0.74737698 0.66402501 220.08242939 
    54901 -0.02402614 0.66439983 0.74699104 241.71444367 
    54902 -0.99946201 0.00072304 -0.03278969 272.56997046 
    54903 Axis -0.38046477 0.84808436 0.36878107 
    54904 Axis point 256.54257924 0.00000000 -63.53916094 
    54905 Rotation angle (degrees) 101.26562109 
    54906 Shift along axis 221.77927269 
    54907  
    54908 
    54909 > fitmap #15 inMap #1
    54910 
    54911 Fit molecule CopB_ Q9JIF7.pdb (#15) to map
    54912 relion_locres_filtered_20240326_GT.mrc (#1) using 5609 atoms 
    54913 average map value = 0.008594, steps = 60 
    54914 shifted from previous position = 0.00441 
    54915 rotated from previous position = 0.00916 degrees 
    54916 atoms outside contour = 2491, contour level = 0.0047281 
    54917  
    54918 Position of CopB_ Q9JIF7.pdb (#15) relative to
    54919 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54920 Matrix rotation and translation 
    54921 -0.02228893 -0.74731749 0.66409320 220.07875194 
    54922 -0.02389765 0.66446668 0.74693569 241.71413304 
    54923 -0.99946591 0.00077814 -0.03266938 272.56807915 
    54924 Axis -0.38039983 0.84810184 0.36880787 
    54925 Axis point 256.53065659 0.00000000 -63.55295808 
    54926 Rotation angle (degrees) 101.25908391 
    54927 Shift along axis 221.80553434 
    54928  
    54929 
    54930 > fitmap #15 inMap #1
    54931 
    54932 Fit molecule CopB_ Q9JIF7.pdb (#15) to map
    54933 relion_locres_filtered_20240326_GT.mrc (#1) using 5609 atoms 
    54934 average map value = 0.008594, steps = 76 
    54935 shifted from previous position = 0.0166 
    54936 rotated from previous position = 0.00886 degrees 
    54937 atoms outside contour = 2488, contour level = 0.0047281 
    54938  
    54939 Position of CopB_ Q9JIF7.pdb (#15) relative to
    54940 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54941 Matrix rotation and translation 
    54942 -0.02232063 -0.74736321 0.66404068 220.06468865 
    54943 -0.02403359 0.66441532 0.74697702 241.70565054 
    54944 -0.99946194 0.00071372 -0.03279199 272.57067260 
    54945 Axis -0.38046168 0.84809074 0.36876958 
    54946 Axis point 256.53287602 0.00000000 -63.52597982 
    54947 Rotation angle (degrees) 101.26509137 
    54948 Shift along axis 221.77791678 
    54949  
    54950 
    54951 > fitmap #15 inMap #1
    54952 
    54953 Fit molecule CopB_ Q9JIF7.pdb (#15) to map
    54954 relion_locres_filtered_20240326_GT.mrc (#1) using 5609 atoms 
    54955 average map value = 0.008594, steps = 76 
    54956 shifted from previous position = 0.0078 
    54957 rotated from previous position = 0.0159 degrees 
    54958 atoms outside contour = 2491, contour level = 0.0047281 
    54959  
    54960 Position of CopB_ Q9JIF7.pdb (#15) relative to
    54961 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54962 Matrix rotation and translation 
    54963 -0.02247122 -0.74746006 0.66392658 220.06921073 
    54964 -0.02421650 0.66430637 0.74706801 241.70092821 
    54965 -0.99945415 0.00070955 -0.03302864 272.57488700 
    54966 Axis -0.38052938 0.84807136 0.36874429 
    54967 Axis point 256.53348528 0.00000000 -63.48963462 
    54968 Rotation angle (degrees) 101.27958588 
    54969 Shift along axis 221.74727038 
    54970  
    54971 
    54972 > hide #!1 models
    54973 
    54974 Drag select of 11 residues 
    54975 
    54976 > select up
    54977 
    54978 163 atoms, 166 bonds, 22 residues, 1 model selected 
    54979 
    54980 > delete sel
    54981 
    54982 > fitmap #15 inMap #1
    54983 
    54984 Fit molecule CopB_ Q9JIF7.pdb (#15) to map
    54985 relion_locres_filtered_20240326_GT.mrc (#1) using 5446 atoms 
    54986 average map value = 0.008714, steps = 76 
    54987 shifted from previous position = 0.0618 
    54988 rotated from previous position = 0.525 degrees 
    54989 atoms outside contour = 2382, contour level = 0.0047281 
    54990  
    54991 Position of CopB_ Q9JIF7.pdb (#15) relative to
    54992 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    54993 Matrix rotation and translation 
    54994 -0.02596350 -0.75079113 0.66002923 220.02712084 
    54995 -0.01759900 0.66049277 0.75062612 241.71169737 
    54996 -0.99950796 0.00787303 -0.03036188 272.65278835 
    54997 Axis -0.37887103 0.84651355 0.37399407 
    54998 Axis point 255.53355241 0.00000000 -64.28644925 
    54999 Rotation angle (degrees) 101.41513659 
    55000 Shift along axis 223.22085069 
    55001  
    55002 
    55003 > show #!1 models
    55004 
    55005 > hide #!1 models
    55006 
    55007 > show #!1 models
    55008 
    55009 > hide #!1 models
    55010 
    55011 > show #32.1 models
    55012 
    55013 > hide #32.1 models
    55014 
    55015 > show #32.1 models
    55016 
    55017 > hide #32.1 models
    55018 
    55019 > show #32.1 models
    55020 
    55021 > hide #32.1 models
    55022 
    55023 > show #32.1 models
    55024 
    55025 > show #!1 models
    55026 
    55027 > hide #32.1 models
    55028 
    55029 > show #32.1 models
    55030 
    55031 > hide #!15 models
    55032 
    55033 > show #!15 models
    55034 
    55035 > hide #!15 models
    55036 
    55037 > hide #32.1 models
    55038 
    55039 > show #!15 models
    55040 
    55041 > hide #!1 models
    55042 
    55043 > show #32.1 models
    55044 
    55045 > hide #32.1 models
    55046 
    55047 > show #32.1 models
    55048 
    55049 > hide #32.1 models
    55050 
    55051 > show #32.1 models
    55052 
    55053 > ui tool show Matchmaker
    55054 
    55055 The cached device pixel ratio value was stale on window expose. Please file a
    55056 QTBUG which explains how to reproduce. 
    55057 
    55058 > matchmaker #!15 to #32.1
    55059 
    55060 Parameters 
    55061 --- 
    55062 Chain pairing | bb 
    55063 Alignment algorithm | Needleman-Wunsch 
    55064 Similarity matrix | BLOSUM-62 
    55065 SS fraction | 0.3 
    55066 Gap open (HH/SS/other) | 18/18/6 
    55067 Gap extend | 1 
    55068 SS matrix |  |  | H | S | O 
    55069 ---|---|---|--- 
    55070 H | 6 | -9 | -6 
    55071 S |  | 6 | -6 
    55072 O |  |  | 4 
    55073 Iteration cutoff | 2 
    55074  
    55075 Matchmaker 5mu7_Thermophila_beta_deltaCOPI.cif A, chain A (#32.1) with CopB_
    55076 Q9JIF7.pdb, chain A (#15), sequence alignment score = 1250.8 
    55077 RMSD between 252 pruned atom pairs is 1.196 angstroms; (across all 369 pairs:
    55078 1.979) 
    55079  
    55080 
    55081 > show #!1 models
    55082 
    55083 > hide #!1 models
    55084 
    55085 > hide #32.1 models
    55086 
    55087 > show #!1 models
    55088 
    55089 > hide #!1 models
    55090 
    55091 > show #32.1 models
    55092 
    55093 > hide #!15 models
    55094 
    55095 > show #!15 models
    55096 
    55097 > hide #!15 models
    55098 
    55099 > show #!15 models
    55100 
    55101 > hide #32.1 models
    55102 
    55103 > show #32.1 models
    55104 
    55105 > hide #32.1 models
    55106 
    55107 > show #32.1 models
    55108 
    55109 > hide #32.1 models
    55110 
    55111 > show #!1 models
    55112 
    55113 > hide #!1 models
    55114 
    55115 > show #!1 models
    55116 
    55117 > hide #!1 models
    55118 
    55119 > show #!1 models
    55120 
    55121 > hide #!1 models
    55122 
    55123 Drag select of 201 residues 
    55124 
    55125 > select up
    55126 
    55127 1960 atoms, 1982 bonds, 249 residues, 1 model selected 
    55128 Drag select of 34 residues 
    55129 
    55130 > select up
    55131 
    55132 356 atoms, 359 bonds, 46 residues, 1 model selected 
    55133 
    55134 > delete sel
    55135 
    55136 Drag select of 250 residues 
    55137 
    55138 > select up
    55139 
    55140 2072 atoms, 2098 bonds, 264 residues, 1 model selected 
    55141 
    55142 > delete sel
    55143 
    55144 Drag select of 3 residues 
    55145 
    55146 > delete sel
    55147 
    55148 > fitmap #15 inMap #1
    55149 
    55150 Fit molecule CopB_ Q9JIF7.pdb (#15) to map
    55151 relion_locres_filtered_20240326_GT.mrc (#1) using 2995 atoms 
    55152 average map value = 0.01087, steps = 52 
    55153 shifted from previous position = 0.203 
    55154 rotated from previous position = 2.56 degrees 
    55155 atoms outside contour = 1018, contour level = 0.0047281 
    55156  
    55157 Position of CopB_ Q9JIF7.pdb (#15) relative to
    55158 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    55159 Matrix rotation and translation 
    55160 -0.02724952 -0.68722196 0.72593625 220.50900449 
    55161 0.02502038 0.72550951 0.68775717 239.42442791 
    55162 -0.99931549 0.03690425 -0.00257523 273.99104548 
    55163 Axis -0.32926029 0.87278841 0.36031661 
    55164 Axis point 248.43699619 0.00000000 -58.82961491 
    55165 Rotation angle (degrees) 98.75198425 
    55166 Shift along axis 235.08553176 
    55167  
    55168 
    55169 > show #!1 models
    55170 
    55171 > hide #!1 models
    55172 
    55173 > show #!1 models
    55174 
    55175 > hide #!1 models
    55176 
    55177 > rename #15 "CopB_ Q9JIF7_G23-F394.pdb"
    55178 
    55179 > hide #!15 models
    55180 
    55181 > show #!15 models
    55182 
    55183 > hide #!15 models
    55184 
    55185 > show #!15 models
    55186 
    55187 > show #16 models
    55188 
    55189 > hide #!15 models
    55190 
    55191 Drag select of 73 residues 
    55192 
    55193 > select up
    55194 
    55195 781 atoms, 794 bonds, 99 residues, 1 model selected 
    55196 
    55197 > delete sel
    55198 
    55199 Drag select of 92 residues 
    55200 
    55201 > select up
    55202 
    55203 903 atoms, 922 bonds, 110 residues, 1 model selected 
    55204 
    55205 > delete sel
    55206 
    55207 Drag select of 3 residues 
    55208 
    55209 > delete sel
    55210 
    55211 Drag select of 44 residues 
    55212 
    55213 > select up
    55214 
    55215 364 atoms, 369 bonds, 45 residues, 1 model selected 
    55216 
    55217 > delete sel
    55218 
    55219 Drag select of 91 residues 
    55220 
    55221 > select up
    55222 
    55223 726 atoms, 731 bonds, 94 residues, 1 model selected 
    55224 
    55225 > select up
    55226 
    55227 5427 atoms, 5504 bonds, 696 residues, 1 model selected 
    55228 
    55229 > select clear
    55230 
    55231 Drag select of 62 residues 
    55232 
    55233 > select up
    55234 
    55235 562 atoms, 568 bonds, 73 residues, 1 model selected 
    55236 
    55237 > delete sel
    55238 
    55239 Drag select of 24 residues 
    55240 
    55241 > select clear
    55242 
    55243 Drag select of 20 residues 
    55244 
    55245 > select up
    55246 
    55247 174 atoms, 174 bonds, 22 residues, 1 model selected 
    55248 
    55249 > delete sel
    55250 
    55251 Drag select of 36 residues 
    55252 
    55253 > select up
    55254 
    55255 446 atoms, 451 bonds, 53 residues, 1 model selected 
    55256 
    55257 > select clear
    55258 
    55259 Drag select of 19 residues 
    55260 
    55261 > select up
    55262 
    55263 337 atoms, 339 bonds, 41 residues, 1 model selected 
    55264 
    55265 > delete sel
    55266 
    55267 > show #!1 models
    55268 
    55269 > fitmap #16 inMap #1
    55270 
    55271 Fit molecule CopB_ Q9JIF7.pdb (#16) to map
    55272 relion_locres_filtered_20240326_GT.mrc (#1) using 4354 atoms 
    55273 average map value = 0.007983, steps = 64 
    55274 shifted from previous position = 1.62 
    55275 rotated from previous position = 2.08 degrees 
    55276 atoms outside contour = 1739, contour level = 0.0047281 
    55277  
    55278 Position of CopB_ Q9JIF7.pdb (#16) relative to
    55279 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    55280 Matrix rotation and translation 
    55281 -0.03640664 -0.65956348 0.75076665 218.50269376 
    55282 0.00387517 0.75116587 0.66010212 248.03049444 
    55283 -0.99932954 0.02694145 -0.02479150 272.25066764 
    55284 Axis -0.32045400 0.88575516 0.33577824 
    55285 Axis point 246.48105337 0.00000000 -53.68695182 
    55286 Rotation angle (degrees) 98.91773215 
    55287 Shift along axis 241.09007696 
    55288  
    55289 
    55290 > hide #!1 models
    55291 
    55292 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    55293 > dataset/Chimera sessions/20240709_leaf_fitting_v39_labelled.cxs"
    55294 
    55295 ——— End of log from Tue Jul 9 17:02:08 2024 ———
    55296 
    55297 opened ChimeraX session 
    55298 
    55299 > show #!1 models
    55300 
    55301 > ui tool show "Fit in Map"
    55302 
    55303 The cached device pixel ratio value was stale on window expose. Please file a
    55304 QTBUG which explains how to reproduce. 
    55305 
    55306 > fitmap #16 inMap #1
    55307 
    55308 Fit molecule CopB_ Q9JIF7.pdb (#16) to map
    55309 relion_locres_filtered_20240326_GT.mrc (#1) using 4354 atoms 
    55310 average map value = 0.007983, steps = 60 
    55311 shifted from previous position = 0.00721 
    55312 rotated from previous position = 0.02 degrees 
    55313 atoms outside contour = 1737, contour level = 0.0047281 
    55314  
    55315 Position of CopB_ Q9JIF7.pdb (#16) relative to
    55316 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    55317 Matrix rotation and translation 
    55318 -0.03643722 -0.65930467 0.75099247 218.49884823 
    55319 0.00383116 0.75139382 0.65984290 248.02662965 
    55320 -0.99932860 0.02692002 -0.02485280 272.24992976 
    55321 Axis -0.32033020 0.88585940 0.33562135 
    55322 Axis point 246.46803886 0.00000000 -53.63717478 
    55323 Rotation angle (degrees) 98.91378636 
    55324 Shift along axis 241.09783052 
    55325  
    55326 
    55327 > fitmap #16 inMap #1
    55328 
    55329 Fit molecule CopB_ Q9JIF7.pdb (#16) to map
    55330 relion_locres_filtered_20240326_GT.mrc (#1) using 4354 atoms 
    55331 average map value = 0.007982, steps = 44 
    55332 shifted from previous position = 0.0305 
    55333 rotated from previous position = 0.0254 degrees 
    55334 atoms outside contour = 1741, contour level = 0.0047281 
    55335  
    55336 Position of CopB_ Q9JIF7.pdb (#16) relative to
    55337 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    55338 Matrix rotation and translation 
    55339 -0.03647715 -0.65947997 0.75083659 218.52782150 
    55340 0.00419660 0.75122890 0.66002843 248.04323495 
    55341 -0.99932568 0.02722691 -0.02463511 272.24790496 
    55342 Axis -0.32026844 0.88577813 0.33589468 
    55343 Axis point 246.44552444 0.00000000 -53.71596676 
    55344 Rotation angle (degrees) 98.91341394 
    55345 Shift along axis 241.17032964 
    55346  
    55347 
    55348 > hide #!1 models
    55349 
    55350 > show #!4 models
    55351 
    55352 > fitmap #4 inMap #1
    55353 
    55354 Fit molecule CopB_Q9JIF7_P395-L953.pdb (#4) to map
    55355 relion_locres_filtered_20240326_GT.mrc (#1) using 4053 atoms 
    55356 average map value = 0.00875, steps = 48 
    55357 shifted from previous position = 0.0121 
    55358 rotated from previous position = 0.014 degrees 
    55359 atoms outside contour = 1375, contour level = 0.0047281 
    55360  
    55361 Position of CopB_Q9JIF7_P395-L953.pdb (#4) relative to
    55362 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    55363 Matrix rotation and translation 
    55364 -0.02337695 -0.73046668 0.68254813 220.14244287 
    55365 -0.03207702 0.68293123 0.72977805 241.57330662 
    55366 -0.99921198 -0.00483413 -0.03939604 273.35713550 
    55367 Axis -0.37411521 0.85646829 0.35566821 
    55368 Axis point 256.51140605 0.00000000 -59.48371440 
    55369 Rotation angle (degrees) 100.94816697 
    55370 Shift along axis 221.76568322 
    55371  
    55372 
    55373 > fitmap #4 inMap #1
    55374 
    55375 Fit molecule CopB_Q9JIF7_P395-L953.pdb (#4) to map
    55376 relion_locres_filtered_20240326_GT.mrc (#1) using 4053 atoms 
    55377 average map value = 0.00875, steps = 48 
    55378 shifted from previous position = 0.00579 
    55379 rotated from previous position = 0.0174 degrees 
    55380 atoms outside contour = 1371, contour level = 0.0047281 
    55381  
    55382 Position of CopB_Q9JIF7_P395-L953.pdb (#4) relative to
    55383 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    55384 Matrix rotation and translation 
    55385 -0.02355850 -0.73044234 0.68256793 220.13580643 
    55386 -0.03183473 0.68295929 0.72976239 241.57756739 
    55387 -0.99921546 -0.00453726 -0.03934293 273.34929776 
    55388 Axis -0.37395975 0.85648862 0.35578272 
    55389 Axis point 256.45009066 0.00000000 -59.48589705 
    55390 Rotation angle (degrees) 100.95109604 
    55391 Shift along axis 221.83946375 
    55392  
    55393 
    55394 > fitmap #4 inMap #1
    55395 
    55396 Fit molecule CopB_Q9JIF7_P395-L953.pdb (#4) to map
    55397 relion_locres_filtered_20240326_GT.mrc (#1) using 4053 atoms 
    55398 average map value = 0.00875, steps = 40 
    55399 shifted from previous position = 0.00772 
    55400 rotated from previous position = 0.0109 degrees 
    55401 atoms outside contour = 1373, contour level = 0.0047281 
    55402  
    55403 Position of CopB_Q9JIF7_P395-L953.pdb (#4) relative to
    55404 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    55405 Matrix rotation and translation 
    55406 -0.02354235 -0.73041659 0.68259604 220.12769576 
    55407 -0.03202010 0.68298589 0.72972939 241.57433729 
    55408 -0.99920992 -0.00467725 -0.03946710 273.35408889 
    55409 Axis -0.37401724 0.85650699 0.35567806 
    55410 Axis point 256.46580478 0.00000000 -59.45365642 
    55411 Rotation angle (degrees) 100.95347164 
    55412 Shift along axis 221.80460690 
    55413  
    55414 
    55415 > fitmap #16 inMap #1
    55416 
    55417 Fit molecule CopB_ Q9JIF7.pdb (#16) to map
    55418 relion_locres_filtered_20240326_GT.mrc (#1) using 4354 atoms 
    55419 average map value = 0.007983, steps = 48 
    55420 shifted from previous position = 0.0411 
    55421 rotated from previous position = 0.0515 degrees 
    55422 atoms outside contour = 1736, contour level = 0.0047281 
    55423  
    55424 Position of CopB_ Q9JIF7.pdb (#16) relative to
    55425 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    55426 Matrix rotation and translation 
    55427 -0.03638626 -0.65899236 0.75126900 218.48669982 
    55428 0.00360782 0.75167529 0.65952349 248.02017180 
    55429 -0.99933129 0.02670804 -0.02497312 272.25136210 
    55430 Axis -0.32027043 0.88598580 0.33534460 
    55431 Axis point 246.48102243 0.00000000 -53.56712757 
    55432 Rotation angle (degrees) 98.90763551 
    55433 Shift along axis 241.06554695 
    55434  
    55435 
    55436 > fitmap #16 inMap #1
    55437 
    55438 Fit molecule CopB_ Q9JIF7.pdb (#16) to map
    55439 relion_locres_filtered_20240326_GT.mrc (#1) using 4354 atoms 
    55440 average map value = 0.007983, steps = 44 
    55441 shifted from previous position = 0.0131 
    55442 rotated from previous position = 0.0397 degrees 
    55443 atoms outside contour = 1740, contour level = 0.0047281 
    55444  
    55445 Position of CopB_ Q9JIF7.pdb (#16) relative to
    55446 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    55447 Matrix rotation and translation 
    55448 -0.03637895 -0.65951364 0.75081178 218.49894110 
    55449 0.00358828 0.75121805 0.66004437 248.02561118 
    55450 -0.99933162 0.02670584 -0.02496200 272.25349195 
    55451 Axis -0.32054633 0.88578543 0.33561022 
    55452 Axis point 246.51297715 0.00000000 -53.64753499 
    55453 Rotation angle (degrees) 98.92036028 
    55454 Shift along axis 241.02949485 
    55455  
    55456 
    55457 > show #!1 models
    55458 
    55459 > hide #!1 models
    55460 
    55461 > hide #!4 models
    55462 
    55463 > show #!4 models
    55464 
    55465 > hide #!4 models
    55466 
    55467 > show #!4 models
    55468 
    55469 > hide #!16 models
    55470 
    55471 > show #!16 models
    55472 
    55473 > hide #!16 models
    55474 
    55475 > show #!16 models
    55476 
    55477 > show #!1 models
    55478 
    55479 > hide #!4 models
    55480 
    55481 > show #!4 models
    55482 
    55483 > hide #!4 models
    55484 
    55485 > hide #!1 models
    55486 
    55487 > hide #!16 models
    55488 
    55489 > show #!16 models
    55490 
    55491 > rename #16 "CopB_ Q9JIF7_.pdb"
    55492 
    55493 > rename #16 "CopB_ Q9JIF7_F394-L953.pdb"
    55494 
    55495 > hide #!16 models
    55496 
    55497 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    55498 > dataset/Chimera sessions/20240709_leaf_fitting_v40_labelled.cxs"
    55499 
    55500 > show #!3 models
    55501 
    55502 > show #!7 models
    55503 
    55504 > show #27.1 models
    55505 
    55506 > hide #27.1 models
    55507 
    55508 > show #27.1 models
    55509 
    55510 > hide #27.1 models
    55511 
    55512 > show #27.1 models
    55513 
    55514 > hide #27.1 models
    55515 
    55516 > show #27.1 models
    55517 
    55518 > hide #27.1 models
    55519 
    55520 > show #27.1 models
    55521 
    55522 > hide #!3 models
    55523 
    55524 > hide #!7 models
    55525 
    55526 > show #!3 models
    55527 
    55528 > hide #27.1 models
    55529 
    55530 > hide #!3 models
    55531 
    55532 > show #!7 models
    55533 
    55534 > hide #!7 models
    55535 
    55536 > rename #7 CopBprime_O55029_beta_props_M1-S586.pdb
    55537 
    55538 > rename #3 CopBprime_O55029_solenoid_L587-E838.pdb
    55539 
    55540 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    55541 > dataset/Chimera sessions/20240709_leaf_fitting_v40_labelled.cxs"
    55542 
    55543 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    55544 > dataset/Structure files/alphafold/CopBprime_O55029.pdb"
    55545 
    55546 CopBprime_O55029.pdb title: 
    55547 Alphafold monomer V2.0 prediction for coatomer subunit β' (O55029) [more
    55548 info...] 
    55549  
    55550 Chain information for CopBprime_O55029.pdb #17 
    55551 --- 
    55552 Chain | Description | UniProt 
    55553 A | coatomer subunit β' | COPB2_MOUSE 1-905 
    55554  
    55555 
    55556 > ui tool show Matchmaker
    55557 
    55558 The cached device pixel ratio value was stale on window expose. Please file a
    55559 QTBUG which explains how to reproduce. 
    55560 
    55561 > matchmaker #17 to #3
    55562 
    55563 Parameters 
    55564 --- 
    55565 Chain pairing | bb 
    55566 Alignment algorithm | Needleman-Wunsch 
    55567 Similarity matrix | BLOSUM-62 
    55568 SS fraction | 0.3 
    55569 Gap open (HH/SS/other) | 18/18/6 
    55570 Gap extend | 1 
    55571 SS matrix |  |  | H | S | O 
    55572 ---|---|---|--- 
    55573 H | 6 | -9 | -6 
    55574 S |  | 6 | -6 
    55575 O |  |  | 4 
    55576 Iteration cutoff | 2 
    55577  
    55578 Matchmaker CopBprime_O55029_solenoid_L587-E838.pdb, chain A (#3) with
    55579 CopBprime_O55029.pdb, chain A (#17), sequence alignment score = 3580.9 
    55580 RMSD between 253 pruned atom pairs is 0.000 angstroms; (across all 253 pairs:
    55581 0.000) 
    55582  
    55583 
    55584 > color #17 cyan
    55585 
    55586 > close #17
    55587 
    55588 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    55589 > dataset/Chimera sessions/20240709_leaf_fitting_v40_labelled.cxs"
    55590 
    55591 > show #!30 models
    55592 
    55593 > show #!2 models
    55594 
    55595 > show #27.2 models
    55596 
    55597 > hide #!2 models
    55598 
    55599 > hide #27.2 models
    55600 
    55601 > hide #!30 models
    55602 
    55603 > hide #!32 models
    55604 
    55605 > show #!13 models
    55606 
    55607 > show #!14 models
    55608 
    55609 > show #!1 models
    55610 
    55611 > fitmap #13 inMap #1
    55612 
    55613 Fit molecule CopA-Q8CIE6_solenoid.pdb (#13) to map
    55614 relion_locres_filtered_20240326_GT.mrc (#1) using 1493 atoms 
    55615 average map value = 0.009856, steps = 40 
    55616 shifted from previous position = 0.04 
    55617 rotated from previous position = 0.256 degrees 
    55618 atoms outside contour = 504, contour level = 0.0047281 
    55619  
    55620 Position of CopA-Q8CIE6_solenoid.pdb (#13) relative to
    55621 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    55622 Matrix rotation and translation 
    55623 -0.09214279 0.81710559 -0.56907658 198.83642817 
    55624 -0.30256058 -0.56746131 -0.76579681 282.30024669 
    55625 -0.94866580 0.10161748 0.29951141 272.32967343 
    55626 Axis 0.59155130 0.25886880 -0.76357973 
    55627 Axis point 286.85143345 127.57854798 0.00000000 
    55628 Rotation angle (degrees) 132.84726465 
    55629 Shift along axis -17.24474722 
    55630  
    55631 
    55632 > fitmap #14 inMap #1
    55633 
    55634 Fit molecule CopA-Q8CIE6_beta_props.pdb (#14) to map
    55635 relion_locres_filtered_20240326_GT.mrc (#1) using 4763 atoms 
    55636 average map value = 0.008718, steps = 28 
    55637 shifted from previous position = 0.024 
    55638 rotated from previous position = 0.0248 degrees 
    55639 atoms outside contour = 1497, contour level = 0.0047281 
    55640  
    55641 Position of CopA-Q8CIE6_beta_props.pdb (#14) relative to
    55642 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    55643 Matrix rotation and translation 
    55644 -0.34442107 0.69704982 -0.62888447 201.10586095 
    55645 0.21648780 -0.59284749 -0.77567060 281.00648441 
    55646 -0.91351363 -0.40330312 0.05328639 263.96649003 
    55647 Axis 0.55471611 0.42401227 -0.71589359 
    55648 Axis point 234.60558972 197.19377182 0.00000000 
    55649 Rotation angle (degrees) 160.38866792 
    55650 Shift along axis 41.73494188 
    55651  
    55652 
    55653 > hide #!13 models
    55654 
    55655 > hide #!1 models
    55656 
    55657 > rename #14 CopA-Q8CIE6_beta_props_M1-T591.pdb
    55658 
    55659 > hide #!14 models
    55660 
    55661 > show #!13 models
    55662 
    55663 > hide #!13 models
    55664 
    55665 > show #!13 models
    55666 
    55667 > show #!1 models
    55668 
    55669 > hide #!1 models
    55670 
    55671 > rename #13 CopA-Q8CIE6_solenoid_I592-T777.pdb
    55672 
    55673 > hide #!13 models
    55674 
    55675 > show #!13 models
    55676 
    55677 > hide #!13 models
    55678 
    55679 > show #!14 models
    55680 
    55681 > hide #!14 models
    55682 
    55683 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    55684 > dataset/Structure files/alphafold/CopA-Q8CIE6.pdb"
    55685 
    55686 CopA-Q8CIE6.pdb title: 
    55687 Alphafold monomer V2.0 prediction for coatomer subunit α (Q8CIE6) [more
    55688 info...] 
    55689  
    55690 Chain information for CopA-Q8CIE6.pdb #17 
    55691 --- 
    55692 Chain | Description | UniProt 
    55693 A | coatomer subunit α | COPA_MOUSE 1-1224 
    55694  
    55695 
    55696 > ui tool show Matchmaker
    55697 
    55698 The cached device pixel ratio value was stale on window expose. Please file a
    55699 QTBUG which explains how to reproduce. 
    55700 
    55701 > matchmaker #17 to #13
    55702 
    55703 Parameters 
    55704 --- 
    55705 Chain pairing | bb 
    55706 Alignment algorithm | Needleman-Wunsch 
    55707 Similarity matrix | BLOSUM-62 
    55708 SS fraction | 0.3 
    55709 Gap open (HH/SS/other) | 18/18/6 
    55710 Gap extend | 1 
    55711 SS matrix |  |  | H | S | O 
    55712 ---|---|---|--- 
    55713 H | 6 | -9 | -6 
    55714 S |  | 6 | -6 
    55715 O |  |  | 4 
    55716 Iteration cutoff | 2 
    55717  
    55718 Matchmaker CopA-Q8CIE6_solenoid_I592-T777.pdb, chain A (#13) with
    55719 CopA-Q8CIE6.pdb, chain A (#17), sequence alignment score = 4842.3 
    55720 RMSD between 186 pruned atom pairs is 0.000 angstroms; (across all 186 pairs:
    55721 0.000) 
    55722  
    55723 
    55724 > show #!14 models
    55725 
    55726 > show #!13 models
    55727 
    55728 > hide #!13 models
    55729 
    55730 > show #!13 models
    55731 
    55732 > hide #!14 models
    55733 
    55734 > hide #17 models
    55735 
    55736 > show #17 models
    55737 
    55738 > show #!1 models
    55739 
    55740 > show #!3 models
    55741 
    55742 > hide #17 models
    55743 
    55744 > hide #!3 models
    55745 
    55746 > show #17 models
    55747 
    55748 > show #!3 models
    55749 
    55750 > hide #!3 models
    55751 
    55752 > hide #!1 models
    55753 
    55754 > ui mousemode right select
    55755 
    55756 Drag select of 324 residues 
    55757 
    55758 > select up
    55759 
    55760 2945 atoms, 3023 bonds, 360 residues, 1 model selected 
    55761 
    55762 > delete sel
    55763 
    55764 > hide #!13 models
    55765 
    55766 > show #!13 models
    55767 
    55768 > hide #!17 models
    55769 
    55770 > show #!17 models
    55771 
    55772 > hide #!13 models
    55773 
    55774 > show #!13 models
    55775 
    55776 > hide #!13 models
    55777 
    55778 Drag select of 220 residues, 4 pseudobonds 
    55779 
    55780 > select up
    55781 
    55782 1806 atoms, 1835 bonds, 4 pseudobonds, 229 residues, 2 models selected 
    55783 
    55784 > delete sel
    55785 
    55786 > hide #!17 models
    55787 
    55788 > show #!17 models
    55789 
    55790 > show #!13 models
    55791 
    55792 > hide #!17 models
    55793 
    55794 > show #!17 models
    55795 
    55796 Drag select of 2 residues 
    55797 
    55798 > delete sel
    55799 
    55800 > hide #!13 models
    55801 
    55802 > show #!13 models
    55803 
    55804 Drag select of 299 residues 
    55805 
    55806 > select up
    55807 
    55808 3058 atoms, 3120 bonds, 391 residues, 1 model selected 
    55809 
    55810 > delete sel
    55811 
    55812 Drag select of 6 residues 
    55813 Drag select of 8 residues 
    55814 
    55815 > delete sel
    55816 
    55817 Drag select of 12 residues 
    55818 
    55819 > delete sel
    55820 
    55821 > color #17 #004affff
    55822 
    55823 > show #!1 models
    55824 
    55825 > show #!3 models
    55826 
    55827 > hide #!1 models
    55828 
    55829 > show #!1 models
    55830 
    55831 > hide #!1 models
    55832 
    55833 > hide #!3 models
    55834 
    55835 Drag select of 5 residues 
    55836 
    55837 > delete sel
    55838 
    55839 Drag select of 5 residues 
    55840 
    55841 > delete sel
    55842 
    55843 Drag select of 3 residues 
    55844 
    55845 > delete sel
    55846 
    55847 Drag select of 3 residues 
    55848 
    55849 > delete sel
    55850 
    55851 > show #!1 models
    55852 
    55853 > fitmap #17 inMap #1
    55854 
    55855 Fit molecule CopA-Q8CIE6.pdb (#17) to map
    55856 relion_locres_filtered_20240326_GT.mrc (#1) using 1653 atoms 
    55857 average map value = 0.009453, steps = 48 
    55858 shifted from previous position = 0.0862 
    55859 rotated from previous position = 1.38 degrees 
    55860 atoms outside contour = 577, contour level = 0.0047281 
    55861  
    55862 Position of CopA-Q8CIE6.pdb (#17) relative to
    55863 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    55864 Matrix rotation and translation 
    55865 -0.06845807 0.82084445 -0.56703428 198.78096995 
    55866 -0.30358441 -0.55855363 -0.77191602 282.52342968 
    55867 -0.95034204 0.11929889 0.28743308 272.74817735 
    55868 Axis 0.60010334 0.25810191 -0.75713895 
    55869 Axis point 291.53210163 126.85447772 0.00000000 
    55870 Rotation angle (degrees) 132.05080567 
    55871 Shift along axis -14.29930723 
    55872  
    55873 
    55874 > fitmap #17 inMap #1
    55875 
    55876 Fit molecule CopA-Q8CIE6.pdb (#17) to map
    55877 relion_locres_filtered_20240326_GT.mrc (#1) using 1653 atoms 
    55878 average map value = 0.009453, steps = 40 
    55879 shifted from previous position = 0.00991 
    55880 rotated from previous position = 0.0527 degrees 
    55881 atoms outside contour = 577, contour level = 0.0047281 
    55882  
    55883 Position of CopA-Q8CIE6.pdb (#17) relative to
    55884 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    55885 Matrix rotation and translation 
    55886 -0.06755042 0.82094493 -0.56699768 198.78818114 
    55887 -0.30351587 -0.55826991 -0.77214819 282.52608291 
    55888 -0.95042888 0.11993386 0.28688118 272.77368705 
    55889 Axis 0.60045412 0.25808483 -0.75686661 
    55890 Axis point 291.71815224 126.83502087 0.00000000 
    55891 Rotation angle (degrees) 132.02613965 
    55892 Shift along axis -14.17441757 
    55893  
    55894 
    55895 > hide #!1 models
    55896 
    55897 Drag select of 3 residues 
    55898 
    55899 > delete sel
    55900 
    55901 > show #!1 models
    55902 
    55903 > hide #!1 models
    55904 
    55905 Drag select of 12 residues 
    55906 
    55907 > select clear
    55908 
    55909 > fitmap #17 inMap #1
    55910 
    55911 Fit molecule CopA-Q8CIE6.pdb (#17) to map
    55912 relion_locres_filtered_20240326_GT.mrc (#1) using 1629 atoms 
    55913 average map value = 0.009463, steps = 44 
    55914 shifted from previous position = 0.132 
    55915 rotated from previous position = 1.12 degrees 
    55916 atoms outside contour = 562, contour level = 0.0047281 
    55917  
    55918 Position of CopA-Q8CIE6.pdb (#17) relative to
    55919 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    55920 Matrix rotation and translation 
    55921 -0.08657160 0.81843121 -0.56804551 198.83570444 
    55922 -0.29956180 -0.56518406 -0.76865448 282.36669779 
    55923 -0.95014109 0.10362109 0.29409961 272.49652777 
    55924 Axis 0.59395260 0.26017771 -0.76126728 
    55925 Axis point 288.02467807 127.91892222 0.00000000 
    55926 Rotation angle (degrees) 132.75212810 
    55927 Shift along axis -15.87818803 
    55928  
    55929 
    55930 > fitmap #17 inMap #1
    55931 
    55932 Fit molecule CopA-Q8CIE6.pdb (#17) to map
    55933 relion_locres_filtered_20240326_GT.mrc (#1) using 1629 atoms 
    55934 average map value = 0.009463, steps = 44 
    55935 shifted from previous position = 0.0381 
    55936 rotated from previous position = 0.104 degrees 
    55937 atoms outside contour = 563, contour level = 0.0047281 
    55938  
    55939 Position of CopA-Q8CIE6.pdb (#17) relative to
    55940 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    55941 Matrix rotation and translation 
    55942 -0.08837560 0.81836583 -0.56786189 198.80999445 
    55943 -0.29937497 -0.56555704 -0.76845290 282.38827482 
    55944 -0.95003388 0.10209115 0.29497969 272.44395498 
    55945 Axis 0.59325832 0.26044255 -0.76171795 
    55946 Axis point 287.67565023 128.03192381 0.00000000 
    55947 Rotation angle (degrees) 132.80274633 
    55948 Shift along axis -16.03384414 
    55949  
    55950 
    55951 > show #!1 models
    55952 
    55953 > hide #!1 models
    55954 
    55955 > show #!1 models
    55956 
    55957 > hide #!1 models
    55958 
    55959 Drag select of 3 residues 
    55960 
    55961 > delete sel
    55962 
    55963 > show #!1 models
    55964 
    55965 > show #!3 models
    55966 
    55967 > hide #!3 models
    55968 
    55969 > rename #17 CopA-Q8CIE6_solecoid_I592-.pdb
    55970 
    55971 > hide #!1 models
    55972 
    55973 > rename #17 CopA-Q8CIE6_solecoid_I592-N791.pdb
    55974 
    55975 > hide #!17 models
    55976 
    55977 > close #13
    55978 
    55979 > rename #17 CopA-Q8CIE6_solenoid_I592-N791.pdb
    55980 
    55981 > show #!1 models
    55982 
    55983 > hide #!1 models
    55984 
    55985 > show #!1 models
    55986 
    55987 > hide #!27 models
    55988 
    55989 > show #!27 models
    55990 
    55991 > show #27.1 models
    55992 
    55993 > fitmap #27.1 inMap #1
    55994 
    55995 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    55996 relion_locres_filtered_20240326_GT.mrc (#1) using 6538 atoms 
    55997 average map value = 0.009129, steps = 28 
    55998 shifted from previous position = 0.0407 
    55999 rotated from previous position = 0.0452 degrees 
    56000 atoms outside contour = 2197, contour level = 0.0047281 
    56001  
    56002 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    56003 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    56004 Matrix rotation and translation 
    56005 0.99559484 0.00374324 0.09368509 -80.52958620 
    56006 -0.00521737 0.99986633 0.01549493 -75.31400016 
    56007 -0.09361457 -0.01591546 0.99548130 -68.64550567 
    56008 Axis -0.16520792 0.98513204 -0.04712972 
    56009 Axis point -806.87142651 0.00000000 923.30838386 
    56010 Rotation angle (degrees) 5.45495891 
    56011 Shift along axis -57.65486622 
    56012  
    56013 
    56014 > fitmap #27.1 inMap #1
    56015 
    56016 Fit molecule 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) to map
    56017 relion_locres_filtered_20240326_GT.mrc (#1) using 6538 atoms 
    56018 average map value = 0.009129, steps = 28 
    56019 shifted from previous position = 0.0471 
    56020 rotated from previous position = 0.0446 degrees 
    56021 atoms outside contour = 2199, contour level = 0.0047281 
    56022  
    56023 Position of 3mkq_yeast_alpha_betaprimeCOPI.cif A (#27.1) relative to
    56024 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    56025 Matrix rotation and translation 
    56026 0.99555306 0.00346629 0.09413872 -80.58795937 
    56027 -0.00500218 0.99985813 0.01608414 -75.45401159 
    56028 -0.09406962 -0.01648351 0.99542915 -68.55921561 
    56029 Axis -0.17033920 0.98438951 -0.04429282 
    56030 Axis point -800.70772442 0.00000000 922.29669395 
    56031 Rotation angle (degrees) 5.48565168 
    56032 Shift along axis -57.51216813 
    56033  
    56034 
    56035 > hide #!1 models
    56036 
    56037 > hide #27.1 models
    56038 
    56039 > show #!7 models
    56040 
    56041 > show #!3 models
    56042 
    56043 > hide #!3 models
    56044 
    56045 > show #!3 models
    56046 
    56047 > show #27.1 models
    56048 
    56049 > hide #27.1 models
    56050 
    56051 > show #27.1 models
    56052 
    56053 > hide #27.1 models
    56054 
    56055 > show #27.1 models
    56056 
    56057 > hide #27.1 models
    56058 
    56059 > hide #!7 models
    56060 
    56061 > hide #!3 models
    56062 
    56063 > show #32.1 models
    56064 
    56065 > show #!4 models
    56066 
    56067 > hide #!4 models
    56068 
    56069 > show #!4 models
    56070 
    56071 > hide #!4 models
    56072 
    56073 > show #!4 models
    56074 
    56075 > hide #32.1 models
    56076 
    56077 > hide #!4 models
    56078 
    56079 > show #!15 models
    56080 
    56081 > show #!16 models
    56082 
    56083 > hide #!15 models
    56084 
    56085 > show #!15 models
    56086 
    56087 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    56088 > dataset/Structure files/alphafold/CopB_ Q9JIF7.pdb"
    56089 
    56090 CopB_ Q9JIF7.pdb title: 
    56091 Alphafold monomer V2.0 prediction for coatomer subunit β (Q9JIF7) [more
    56092 info...] 
    56093  
    56094 Chain information for CopB_ Q9JIF7.pdb #13 
    56095 --- 
    56096 Chain | Description | UniProt 
    56097 A | coatomer subunit β | COPB_MOUSE 1-953 
    56098  
    56099 
    56100 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    56101 > dataset/Structure files/alphafold/CopB_ Q9JIF7.pdb"
    56102 
    56103 CopB_ Q9JIF7.pdb title: 
    56104 Alphafold monomer V2.0 prediction for coatomer subunit β (Q9JIF7) [more
    56105 info...] 
    56106  
    56107 Chain information for CopB_ Q9JIF7.pdb #18 
    56108 --- 
    56109 Chain | Description | UniProt 
    56110 A | coatomer subunit β | COPB_MOUSE 1-953 
    56111  
    56112 
    56113 > ui tool show Matchmaker
    56114 
    56115 The cached device pixel ratio value was stale on window expose. Please file a
    56116 QTBUG which explains how to reproduce. 
    56117 
    56118 > matchmaker #18 to #4
    56119 
    56120 Parameters 
    56121 --- 
    56122 Chain pairing | bb 
    56123 Alignment algorithm | Needleman-Wunsch 
    56124 Similarity matrix | BLOSUM-62 
    56125 SS fraction | 0.3 
    56126 Gap open (HH/SS/other) | 18/18/6 
    56127 Gap extend | 1 
    56128 SS matrix |  |  | H | S | O 
    56129 ---|---|---|--- 
    56130 H | 6 | -9 | -6 
    56131 S |  | 6 | -6 
    56132 O |  |  | 4 
    56133 Iteration cutoff | 2 
    56134  
    56135 Matchmaker CopB_Q9JIF7_P395-L953.pdb, chain A (#4) with CopB_ Q9JIF7.pdb,
    56136 chain A (#18), sequence alignment score = 4184.9 
    56137 RMSD between 418 pruned atom pairs is 0.845 angstroms; (across all 520 pairs:
    56138 2.356) 
    56139  
    56140 
    56141 > hide #!16 models
    56142 
    56143 > hide #!15 models
    56144 
    56145 > hide #13 models
    56146 
    56147 > close #13
    56148 
    56149 > show #!1 models
    56150 
    56151 > hide #!1 models
    56152 
    56153 > show #!4 models
    56154 
    56155 > close #18
    56156 
    56157 > show #!1 models
    56158 
    56159 > hide #!4 models
    56160 
    56161 > hide #!1 models
    56162 
    56163 > hide #!27 models
    56164 
    56165 > show #!27 models
    56166 
    56167 > show #32.2 models
    56168 
    56169 > color #32.2 #b55c00ff
    56170 
    56171 > show #8 models
    56172 
    56173 > hide #8 models
    56174 
    56175 > show #8 models
    56176 
    56177 > hide #8 models
    56178 
    56179 > show #8 models
    56180 
    56181 > hide #8 models
    56182 
    56183 > ui tool show Matchmaker
    56184 
    56185 The cached device pixel ratio value was stale on window expose. Please file a
    56186 QTBUG which explains how to reproduce. 
    56187 
    56188 > matchmaker #8 to #32.2
    56189 
    56190 Parameters 
    56191 --- 
    56192 Chain pairing | bb 
    56193 Alignment algorithm | Needleman-Wunsch 
    56194 Similarity matrix | BLOSUM-62 
    56195 SS fraction | 0.3 
    56196 Gap open (HH/SS/other) | 18/18/6 
    56197 Gap extend | 1 
    56198 SS matrix |  |  | H | S | O 
    56199 ---|---|---|--- 
    56200 H | 6 | -9 | -6 
    56201 S |  | 6 | -6 
    56202 O |  |  | 4 
    56203 Iteration cutoff | 2 
    56204  
    56205 Matchmaker 5mu7_Thermophila_beta_deltaCOPI.cif B, chain B (#32.2) with
    56206 CopD_Q5XJY5, chain A (#8), sequence alignment score = 518 
    56207 RMSD between 138 pruned atom pairs is 0.707 angstroms; (across all 150 pairs:
    56208 1.098) 
    56209  
    56210 
    56211 > show #8 models
    56212 
    56213 > hide #8 models
    56214 
    56215 > show #8 models
    56216 
    56217 > hide #8 models
    56218 
    56219 > show #8 models
    56220 
    56221 > show #!1 models
    56222 
    56223 > fitmap #8 inMap #1
    56224 
    56225 Fit molecule CopD_Q5XJY5 (#8) to map relion_locres_filtered_20240326_GT.mrc
    56226 (#1) using 1462 atoms 
    56227 average map value = 0.00841, steps = 84 
    56228 shifted from previous position = 1.47 
    56229 rotated from previous position = 5.16 degrees 
    56230 atoms outside contour = 557, contour level = 0.0047281 
    56231  
    56232 Position of CopD_Q5XJY5 (#8) relative to
    56233 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    56234 Matrix rotation and translation 
    56235 0.07154755 0.98848917 0.13330464 -99.08181251 
    56236 -0.91244029 0.01087778 0.40906527 162.75356743 
    56237 0.40290653 -0.15090014 0.90271562 445.95259972 
    56238 Axis -0.27999043 -0.13480467 -0.95049096 
    56239 Axis point -59.66961351 162.60931329 0.00000000 
    56240 Rotation angle (degrees) 90.42568446 
    56241 Shift along axis -418.07189440 
    56242  
    56243 
    56244 > fitmap #8 inMap #1
    56245 
    56246 Fit molecule CopD_Q5XJY5 (#8) to map relion_locres_filtered_20240326_GT.mrc
    56247 (#1) using 1462 atoms 
    56248 average map value = 0.00841, steps = 84 
    56249 shifted from previous position = 1.47 
    56250 rotated from previous position = 5.16 degrees 
    56251 atoms outside contour = 557, contour level = 0.0047281 
    56252  
    56253 Position of CopD_Q5XJY5 (#8) relative to
    56254 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    56255 Matrix rotation and translation 
    56256 0.07154755 0.98848917 0.13330464 -99.08181251 
    56257 -0.91244029 0.01087778 0.40906527 162.75356743 
    56258 0.40290653 -0.15090014 0.90271562 445.95259972 
    56259 Axis -0.27999043 -0.13480467 -0.95049096 
    56260 Axis point -59.66961351 162.60931329 0.00000000 
    56261 Rotation angle (degrees) 90.42568446 
    56262 Shift along axis -418.07189440 
    56263  
    56264 
    56265 > hide #!1 models
    56266 
    56267 > hide #8 models
    56268 
    56269 > show #32.1 models
    56270 
    56271 > show #8 models
    56272 
    56273 > show #!1 models
    56274 
    56275 > hide #!1 models
    56276 
    56277 > hide #32.1 models
    56278 
    56279 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    56280 > dataset/Chimera sessions/20240710_leaf_fitting_v41_labelled.cxs"
    56281 
    56282 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    56283 > dataset/Structure files/alphafold/CopD_Q5XJY5.pdb"
    56284 
    56285 CopD_Q5XJY5.pdb title: 
    56286 Alphafold monomer V2.0 prediction for coatomer subunit δ (Q5XJY5) [more
    56287 info...] 
    56288  
    56289 Chain information for CopD_Q5XJY5.pdb #13 
    56290 --- 
    56291 Chain | Description | UniProt 
    56292 A | coatomer subunit δ | COPD_MOUSE 1-511 
    56293  
    56294 
    56295 > ui tool show Matchmaker
    56296 
    56297 The cached device pixel ratio value was stale on window expose. Please file a
    56298 QTBUG which explains how to reproduce. 
    56299 
    56300 > matchmaker #13 to #8
    56301 
    56302 Parameters 
    56303 --- 
    56304 Chain pairing | bb 
    56305 Alignment algorithm | Needleman-Wunsch 
    56306 Similarity matrix | BLOSUM-62 
    56307 SS fraction | 0.3 
    56308 Gap open (HH/SS/other) | 18/18/6 
    56309 Gap extend | 1 
    56310 SS matrix |  |  | H | S | O 
    56311 ---|---|---|--- 
    56312 H | 6 | -9 | -6 
    56313 S |  | 6 | -6 
    56314 O |  |  | 4 
    56315 Iteration cutoff | 2 
    56316  
    56317 Matchmaker CopD_Q5XJY5, chain A (#8) with CopD_Q5XJY5.pdb, chain A (#13),
    56318 sequence alignment score = 2127.5 
    56319 RMSD between 179 pruned atom pairs is 0.000 angstroms; (across all 179 pairs:
    56320 0.000) 
    56321  
    56322 
    56323 > hide #8 models
    56324 
    56325 > hide #32.2 models
    56326 
    56327 > close #13
    56328 
    56329 > show #!1 models
    56330 
    56331 > show #!9 models
    56332 
    56333 > hide #!9 models
    56334 
    56335 > show #!9 models
    56336 
    56337 > hide #!9 models
    56338 
    56339 > hide #!26.2 models
    56340 
    56341 > show #!26.2 models
    56342 
    56343 > hide #!26.1 models
    56344 
    56345 > hide #26.3 models
    56346 
    56347 > show #!9 models
    56348 
    56349 > show #!29 models
    56350 
    56351 > hide #!29 models
    56352 
    56353 > hide #!1 models
    56354 
    56355 > hide #!9 models
    56356 
    56357 > fitmap #26.2 inMap #1
    56358 
    56359 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) to map
    56360 relion_locres_filtered_20240326_GT.mrc (#1) using 2069 atoms 
    56361 average map value = 0.01291, steps = 56 
    56362 shifted from previous position = 0.0251 
    56363 rotated from previous position = 0.051 degrees 
    56364 atoms outside contour = 608, contour level = 0.0047281 
    56365  
    56366 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) relative to
    56367 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    56368 Matrix rotation and translation 
    56369 -0.26733622 0.21032158 -0.94037023 331.60663228 
    56370 0.69674895 0.71631482 -0.03786782 310.04890379 
    56371 0.66563672 -0.66532541 -0.33803823 215.93057949 
    56372 Axis -0.35023598 -0.89644530 0.27151535 
    56373 Axis point -0.95000729 0.00000000 228.97636103 
    56374 Rotation angle (degrees) 116.39326055 
    56375 Shift along axis -335.45398968 
    56376  
    56377 
    56378 > fitmap #26.2 inMap #1
    56379 
    56380 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) to map
    56381 relion_locres_filtered_20240326_GT.mrc (#1) using 2069 atoms 
    56382 average map value = 0.01291, steps = 36 
    56383 shifted from previous position = 0.00374 
    56384 rotated from previous position = 0.0122 degrees 
    56385 atoms outside contour = 609, contour level = 0.0047281 
    56386  
    56387 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) relative to
    56388 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    56389 Matrix rotation and translation 
    56390 -0.26717041 0.21033229 -0.94041496 331.60392234 
    56391 0.69686519 0.71620571 -0.03779244 310.03972167 
    56392 0.66558160 -0.66543948 -0.33792223 215.92559862 
    56393 Axis -0.35032496 -0.89639662 0.27156126 
    56394 Axis point -0.98873363 0.00000000 228.98410216 
    56395 Rotation angle (degrees) 116.38773736 
    56396 Shift along axis -335.45066247 
    56397  
    56398 
    56399 > fitmap #26.2 inMap #1
    56400 
    56401 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) to map
    56402 relion_locres_filtered_20240326_GT.mrc (#1) using 2069 atoms 
    56403 average map value = 0.01291, steps = 28 
    56404 shifted from previous position = 0.0326 
    56405 rotated from previous position = 0.0234 degrees 
    56406 atoms outside contour = 610, contour level = 0.0047281 
    56407  
    56408 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) relative to
    56409 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    56410 Matrix rotation and translation 
    56411 -0.26697217 0.21065641 -0.94039871 331.59657938 
    56412 0.69706188 0.71602994 -0.03749454 310.03682210 
    56413 0.66545517 -0.66552610 -0.33800062 215.90836829 
    56414 Axis -0.35054501 -0.89633087 0.27149434 
    56415 Axis point -1.03095250 0.00000000 228.93362673 
    56416 Rotation angle (degrees) 116.38952549 
    56417 Shift along axis -335.51719967 
    56418  
    56419 
    56420 > fitmap #26.2 inMap #1
    56421 
    56422 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) to map
    56423 relion_locres_filtered_20240326_GT.mrc (#1) using 2069 atoms 
    56424 average map value = 0.01291, steps = 28 
    56425 shifted from previous position = 0.00445 
    56426 rotated from previous position = 0.0137 degrees 
    56427 atoms outside contour = 610, contour level = 0.0047281 
    56428  
    56429 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) relative to
    56430 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    56431 Matrix rotation and translation 
    56432 -0.26679252 0.21056017 -0.94047124 331.58927289 
    56433 0.69714625 0.71594888 -0.03747386 310.03464837 
    56434 0.66543884 -0.66564375 -0.33780104 215.89715592 
    56435 Axis -0.35059328 -0.89628824 0.27157273 
    56436 Axis point -1.07395213 0.00000000 228.95451697 
    56437 Rotation angle (degrees) 116.37999043 
    56438 Shift along axis -335.50160010 
    56439  
    56440 
    56441 > fitmap #26.2 inMap #1
    56442 
    56443 Fit molecule 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) to map
    56444 relion_locres_filtered_20240326_GT.mrc (#1) using 2069 atoms 
    56445 average map value = 0.01291, steps = 28 
    56446 shifted from previous position = 0.0267 
    56447 rotated from previous position = 0.0146 degrees 
    56448 atoms outside contour = 611, contour level = 0.0047281 
    56449  
    56450 Position of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B (#26.2) relative to
    56451 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    56452 Matrix rotation and translation 
    56453 -0.26667615 0.21041952 -0.94053572 331.59520251 
    56454 0.69725196 0.71584216 -0.03754595 310.01061083 
    56455 0.66537473 -0.66580299 -0.33761345 215.89823911 
    56456 Axis -0.35062278 -0.89623952 0.27169540 
    56457 Axis point -1.10328148 0.00000000 228.99319129 
    56458 Rotation angle (degrees) 116.37368341 
    56459 Shift along axis -335.45003587 
    56460  
    56461 
    56462 > show #!9 models
    56463 
    56464 > hide #!9 models
    56465 
    56466 > show #!9 models
    56467 
    56468 > hide #!26.2 models
    56469 
    56470 Drag select of 2 pseudobonds 
    56471 
    56472 > delete sel
    56473 
    56474 > select add #9
    56475 
    56476 2173 atoms, 2202 bonds, 4 pseudobonds, 277 residues, 2 models selected 
    56477 
    56478 > select subtract #9
    56479 
    56480 Nothing selected 
    56481 Drag select of 1 pseudobonds 
    56482 
    56483 > delete sel
    56484 
    56485 [Repeated 1 time(s)]
    56486 
    56487 > show #!26.2 models
    56488 
    56489 > hide #!9 models
    56490 
    56491 > select add #9
    56492 
    56493 2173 atoms, 2202 bonds, 4 pseudobonds, 277 residues, 2 models selected 
    56494 
    56495 > show #!9 models
    56496 
    56497 > select subtract #9
    56498 
    56499 Nothing selected 
    56500 
    56501 > hide #!26.2 models
    56502 
    56503 > show #!26.2 models
    56504 
    56505 > rename #8 CopD_Q5XJY5_M1-R175
    56506 
    56507 > hide #!9 models
    56508 
    56509 > show #!9 models
    56510 
    56511 > hide #!26.2 models
    56512 
    56513 > rename #9 CopG_Q9QZE5_L311-T583
    56514 
    56515 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    56516 > dataset/Structure files/alphafold/CopG1_ Q9QZE5.pdb"
    56517 
    56518 CopG1_ Q9QZE5.pdb title: 
    56519 Alphafold monomer V2.0 prediction for coatomer subunit γ-1 (Q9QZE5) [more
    56520 info...] 
    56521  
    56522 Chain information for CopG1_ Q9QZE5.pdb #13 
    56523 --- 
    56524 Chain | Description | UniProt 
    56525 A | coatomer subunit γ-1 | COPG1_MOUSE 1-874 
    56526  
    56527 
    56528 > color #13 #24fa00ff
    56529 
    56530 > ui tool show Matchmaker
    56531 
    56532 The cached device pixel ratio value was stale on window expose. Please file a
    56533 QTBUG which explains how to reproduce. 
    56534 
    56535 > matchmaker #13 to #9
    56536 
    56537 Parameters 
    56538 --- 
    56539 Chain pairing | bb 
    56540 Alignment algorithm | Needleman-Wunsch 
    56541 Similarity matrix | BLOSUM-62 
    56542 SS fraction | 0.3 
    56543 Gap open (HH/SS/other) | 18/18/6 
    56544 Gap extend | 1 
    56545 SS matrix |  |  | H | S | O 
    56546 ---|---|---|--- 
    56547 H | 6 | -9 | -6 
    56548 S |  | 6 | -6 
    56549 O |  |  | 4 
    56550 Iteration cutoff | 2 
    56551  
    56552 Matchmaker CopG_Q9QZE5_L311-T583, chain A (#9) with CopG1_ Q9QZE5.pdb, chain A
    56553 (#13), sequence alignment score = 3547.2 
    56554 RMSD between 276 pruned atom pairs is 0.730 angstroms; (across all 277 pairs:
    56555 2.377) 
    56556  
    56557 
    56558 > hide #!9 models
    56559 
    56560 > show #!9 models
    56561 
    56562 > hide #!9 models
    56563 
    56564 > show #!9 models
    56565 
    56566 > hide #!9 models
    56567 
    56568 > show #!9 models
    56569 
    56570 > hide #!9 models
    56571 
    56572 > show #!9 models
    56573 
    56574 > hide #!9 models
    56575 
    56576 > hide #13 models
    56577 
    56578 > show #13 models
    56579 
    56580 > show #!1 models
    56581 
    56582 > show #!9 models
    56583 
    56584 > hide #!9 models
    56585 
    56586 > show #!9 models
    56587 
    56588 > hide #!1 models
    56589 
    56590 > show #!1 models
    56591 
    56592 > hide #13 models
    56593 
    56594 > show #!26.2 models
    56595 
    56596 > hide #!26.2 models
    56597 
    56598 > show #!26.2 models
    56599 
    56600 > show #!29 models
    56601 
    56602 > hide #!29 models
    56603 
    56604 > show #!29 models
    56605 
    56606 > show #13 models
    56607 
    56608 > hide #!1 models
    56609 
    56610 > hide #!9 models
    56611 
    56612 > ui tool show Matchmaker
    56613 
    56614 The cached device pixel ratio value was stale on window expose. Please file a
    56615 QTBUG which explains how to reproduce. 
    56616 
    56617 > matchmaker #13 to #29
    56618 
    56619 Parameters 
    56620 --- 
    56621 Chain pairing | bb 
    56622 Alignment algorithm | Needleman-Wunsch 
    56623 Similarity matrix | BLOSUM-62 
    56624 SS fraction | 0.3 
    56625 Gap open (HH/SS/other) | 18/18/6 
    56626 Gap extend | 1 
    56627 SS matrix |  |  | H | S | O 
    56628 ---|---|---|--- 
    56629 H | 6 | -9 | -6 
    56630 S |  | 6 | -6 
    56631 O |  |  | 4 
    56632 Iteration cutoff | 2 
    56633  
    56634 Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B, chain B (#29)
    56635 with CopG1_ Q9QZE5.pdb, chain A (#13), sequence alignment score = 1223.2 
    56636 RMSD between 214 pruned atom pairs is 0.825 angstroms; (across all 264 pairs:
    56637 2.836) 
    56638  
    56639 
    56640 > show #!1 models
    56641 
    56642 > show #!7 models
    56643 
    56644 > hide #!7 models
    56645 
    56646 > hide #13 models
    56647 
    56648 > show #13 models
    56649 
    56650 > hide #13 models
    56651 
    56652 > hide #!26.2 models
    56653 
    56654 > show #!2 models
    56655 
    56656 > show #!3 models
    56657 
    56658 > hide #!3 models
    56659 
    56660 > show #!3 models
    56661 
    56662 > hide #!3 models
    56663 
    56664 > hide #!2 models
    56665 
    56666 > show #!17 models
    56667 
    56668 > hide #!17 models
    56669 
    56670 > show #!26.2 models
    56671 
    56672 > show #13 models
    56673 
    56674 > hide #!26.2 models
    56675 
    56676 > hide #13 models
    56677 
    56678 > show #!15 models
    56679 
    56680 > hide #!15 models
    56681 
    56682 > show #!17 models
    56683 
    56684 > hide #!17 models
    56685 
    56686 > show #!26.2 models
    56687 
    56688 > hide #!26.2 models
    56689 
    56690 > show #!26.2 models
    56691 
    56692 > show #!9 models
    56693 
    56694 > show #13 models
    56695 
    56696 > show #8 models
    56697 
    56698 > show #!2 models
    56699 
    56700 > show #!3 models
    56701 
    56702 > show #!4 models
    56703 
    56704 > show #5 models
    56705 
    56706 > show #6 models
    56707 
    56708 > show #!7 models
    56709 
    56710 > hide #13 models
    56711 
    56712 > hide #!9 models
    56713 
    56714 > hide #!26.2 models
    56715 
    56716 > show #!25.6 models
    56717 
    56718 > ui tool show Matchmaker
    56719 
    56720 The cached device pixel ratio value was stale on window expose. Please file a
    56721 QTBUG which explains how to reproduce. 
    56722 
    56723 > matchmaker #!25.6 to #29
    56724 
    56725 Parameters 
    56726 --- 
    56727 Chain pairing | bb 
    56728 Alignment algorithm | Needleman-Wunsch 
    56729 Similarity matrix | BLOSUM-62 
    56730 SS fraction | 0.3 
    56731 Gap open (HH/SS/other) | 18/18/6 
    56732 Gap extend | 1 
    56733 SS matrix |  |  | H | S | O 
    56734 ---|---|---|--- 
    56735 H | 6 | -9 | -6 
    56736 S |  | 6 | -6 
    56737 O |  |  | 4 
    56738 Iteration cutoff | 2 
    56739  
    56740 Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B, chain B (#29)
    56741 with 5nzr_COPI_coat_leaf_2017.cif G, chain G (#25.6), sequence alignment score
    56742 = 1180.9 
    56743 RMSD between 127 pruned atom pairs is 1.367 angstroms; (across all 263 pairs:
    56744 3.108) 
    56745  
    56746 
    56747 > hide #!1 models
    56748 
    56749 > show #!1 models
    56750 
    56751 > hide #!2 models
    56752 
    56753 > hide #!3 models
    56754 
    56755 > hide #!4 models
    56756 
    56757 > hide #5 models
    56758 
    56759 > hide #6 models
    56760 
    56761 > hide #!7 models
    56762 
    56763 > hide #8 models
    56764 
    56765 > show #13 models
    56766 
    56767 > hide #!1 models
    56768 
    56769 > hide #13 models
    56770 
    56771 > hide #!25.6 models
    56772 
    56773 > show #!25.6 models
    56774 
    56775 > hide #!25.6 models
    56776 
    56777 > show #!25.6 models
    56778 
    56779 > hide #!29 models
    56780 
    56781 > show #13 models
    56782 
    56783 > hide #13 models
    56784 
    56785 > show #13 models
    56786 
    56787 > hide #13 models
    56788 
    56789 > show #13 models
    56790 
    56791 > hide #13 models
    56792 
    56793 > show #13 models
    56794 
    56795 > hide #13 models
    56796 
    56797 > show #13 models
    56798 
    56799 > hide #13 models
    56800 
    56801 > show #13 models
    56802 
    56803 > hide #13 models
    56804 
    56805 > show #13 models
    56806 
    56807 > hide #!25.6 models
    56808 
    56809 > hide #13 models
    56810 
    56811 > show #!9 models
    56812 
    56813 > show #13 models
    56814 
    56815 > ui tool show Matchmaker
    56816 
    56817 The cached device pixel ratio value was stale on window expose. Please file a
    56818 QTBUG which explains how to reproduce. 
    56819 
    56820 > matchmaker #13 to #9
    56821 
    56822 Parameters 
    56823 --- 
    56824 Chain pairing | bb 
    56825 Alignment algorithm | Needleman-Wunsch 
    56826 Similarity matrix | BLOSUM-62 
    56827 SS fraction | 0.3 
    56828 Gap open (HH/SS/other) | 18/18/6 
    56829 Gap extend | 1 
    56830 SS matrix |  |  | H | S | O 
    56831 ---|---|---|--- 
    56832 H | 6 | -9 | -6 
    56833 S |  | 6 | -6 
    56834 O |  |  | 4 
    56835 Iteration cutoff | 2 
    56836  
    56837 Matchmaker CopG_Q9QZE5_L311-T583, chain A (#9) with CopG1_ Q9QZE5.pdb, chain A
    56838 (#13), sequence alignment score = 3547.2 
    56839 RMSD between 276 pruned atom pairs is 0.730 angstroms; (across all 277 pairs:
    56840 2.377) 
    56841  
    56842 
    56843 > hide #!9 models
    56844 
    56845 > show #!9 models
    56846 
    56847 > hide #!9 models
    56848 
    56849 Drag select of 140 residues 
    56850 
    56851 > select up
    56852 
    56853 1252 atoms, 1269 bonds, 161 residues, 1 model selected 
    56854 
    56855 > delete sel
    56856 
    56857 > show #!9 models
    56858 
    56859 > hide #!9 models
    56860 
    56861 > show #!9 models
    56862 
    56863 > hide #!9 models
    56864 
    56865 > show #!9 models
    56866 
    56867 > hide #!9 models
    56868 
    56869 Drag select of 129 residues, 1 pseudobonds 
    56870 
    56871 > delete sel
    56872 
    56873 > show #!9 models
    56874 
    56875 > hide #!9 models
    56876 
    56877 > show #!9 models
    56878 
    56879 > hide #!9 models
    56880 
    56881 > show #!9 models
    56882 
    56883 > hide #!9 models
    56884 
    56885 Drag select of 52 residues 
    56886 
    56887 > select up
    56888 
    56889 437 atoms, 438 bonds, 56 residues, 1 model selected 
    56890 
    56891 > select down
    56892 
    56893 413 atoms, 52 residues, 1 model selected 
    56894 
    56895 > select up
    56896 
    56897 437 atoms, 438 bonds, 56 residues, 1 model selected 
    56898 Drag select of 68 residues, 1 pseudobonds 
    56899 
    56900 > select up
    56901 
    56902 580 atoms, 584 bonds, 1 pseudobond, 77 residues, 2 models selected 
    56903 
    56904 > delete sel
    56905 
    56906 > show #!9 models
    56907 
    56908 > hide #!9 models
    56909 
    56910 > show #!9 models
    56911 
    56912 > hide #!9 models
    56913 
    56914 > show #!9 models
    56915 
    56916 > hide #!9 models
    56917 
    56918 > show #!9 models
    56919 
    56920 > hide #!9 models
    56921 
    56922 Drag select of 101 residues 
    56923 
    56924 > select clear
    56925 
    56926 Drag select of 193 residues 
    56927 
    56928 > select down
    56929 
    56930 1544 atoms, 193 residues, 1 model selected 
    56931 
    56932 > select up
    56933 
    56934 1595 atoms, 1619 bonds, 200 residues, 1 model selected 
    56935 
    56936 > select down
    56937 
    56938 1544 atoms, 193 residues, 1 model selected 
    56939 Drag select of 165 residues 
    56940 
    56941 > select up
    56942 
    56943 1436 atoms, 1456 bonds, 180 residues, 1 model selected 
    56944 
    56945 > delete sel
    56946 
    56947 > select clear
    56948 
    56949 [Repeated 2 time(s)]
    56950 
    56951 > show #!9 models
    56952 
    56953 > hide #!9 models
    56954 
    56955 > show #!9 models
    56956 
    56957 > hide #!9 models
    56958 
    56959 Drag select of 3 residues 
    56960 
    56961 > delete sel
    56962 
    56963 Drag select of 17 residues 
    56964 
    56965 > select clear
    56966 
    56967 Drag select of 8 residues 
    56968 
    56969 > select up
    56970 
    56971 103 atoms, 104 bonds, 13 residues, 1 model selected 
    56972 
    56973 > delete sel
    56974 
    56975 Drag select of 1 residues 
    56976 Drag select of 2 residues 
    56977 [Repeated 1 time(s)]
    56978 
    56979 > select up
    56980 
    56981 98 atoms, 99 bonds, 12 residues, 1 model selected 
    56982 
    56983 > delete sel
    56984 
    56985 > show #!9 models
    56986 
    56987 > hide #!9 models
    56988 
    56989 > show #!1 models
    56990 
    56991 > select add #13
    56992 
    56993 2328 atoms, 2373 bonds, 299 residues, 1 model selected 
    56994 Drag select of 1 relion_locres_filtered_20240326_GT.mrc 
    56995 Drag select of 1 relion_locres_filtered_20240326_GT.mrc , 3 residues 
    56996 
    56997 > select subtract #1
    56998 
    56999 27 atoms, 3 residues, 1 model selected 
    57000 
    57001 > ui mousemode right "translate selected models"
    57002 
    57003 > view matrix models
    57004 > #13,0.26248,-0.32251,-0.90944,345.14,0.81049,-0.43779,0.38917,383.4,-0.52366,-0.83924,0.14648,353.45
    57005 
    57006 > view matrix models
    57007 > #13,0.26248,-0.32251,-0.90944,352.18,0.81049,-0.43779,0.38917,384.15,-0.52366,-0.83924,0.14648,347.38
    57008 
    57009 > ui mousemode right "rotate selected models"
    57010 
    57011 > view matrix models
    57012 > #13,0.20094,-0.82826,0.52308,353.56,0.46419,-0.38971,-0.7954,372.84,0.86264,0.40263,0.30616,383.21
    57013 
    57014 The cached device pixel ratio value was stale on window expose. Please file a
    57015 QTBUG which explains how to reproduce. 
    57016 
    57017 > view matrix models
    57018 > #13,-0.6819,-0.58472,0.43944,345.73,-0.64001,0.18612,-0.74548,367.96,0.35411,-0.7896,-0.50114,354.56
    57019 
    57020 > view matrix models
    57021 > #13,-0.66738,-0.63667,0.38634,344.81,-0.58717,0.13074,-0.79884,367.46,0.45808,-0.75997,-0.46109,356.52
    57022 
    57023 > fitmap #13 inMap #1
    57024 
    57025 Fit molecule CopG1_ Q9QZE5.pdb (#13) to map
    57026 relion_locres_filtered_20240326_GT.mrc (#1) using 2328 atoms 
    57027 average map value = 0.005846, steps = 152 
    57028 shifted from previous position = 18.7 
    57029 rotated from previous position = 34.7 degrees 
    57030 atoms outside contour = 1035, contour level = 0.0047281 
    57031  
    57032 Position of CopG1_ Q9QZE5.pdb (#13) relative to
    57033 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    57034 Matrix rotation and translation 
    57035 -0.46400453 -0.87604818 0.13129885 283.29510646 
    57036 -0.79478126 0.34625888 -0.49842507 304.63145454 
    57037 0.39118098 -0.33562535 -0.85693236 272.46239451 
    57038 Axis 0.51316106 -0.81917459 0.25616151 
    57039 Axis point 223.36083300 0.00000000 198.52241567 
    57040 Rotation angle (degrees) 170.87294058 
    57041 Shift along axis -34.37594886 
    57042  
    57043 
    57044 > select add #13
    57045 
    57046 2328 atoms, 2373 bonds, 299 residues, 1 model selected 
    57047 
    57048 > ui tool show Matchmaker
    57049 
    57050 The cached device pixel ratio value was stale on window expose. Please file a
    57051 QTBUG which explains how to reproduce. 
    57052 
    57053 > matchmaker #!13 to #25.6
    57054 
    57055 Parameters 
    57056 --- 
    57057 Chain pairing | bb 
    57058 Alignment algorithm | Needleman-Wunsch 
    57059 Similarity matrix | BLOSUM-62 
    57060 SS fraction | 0.3 
    57061 Gap open (HH/SS/other) | 18/18/6 
    57062 Gap extend | 1 
    57063 SS matrix |  |  | H | S | O 
    57064 ---|---|---|--- 
    57065 H | 6 | -9 | -6 
    57066 S |  | 6 | -6 
    57067 O |  |  | 4 
    57068 Iteration cutoff | 2 
    57069  
    57070 Matchmaker 5nzr_COPI_coat_leaf_2017.cif G, chain G (#25.6) with CopG1_
    57071 Q9QZE5.pdb, chain A (#13), sequence alignment score = 3073 
    57072 RMSD between 123 pruned atom pairs is 1.312 angstroms; (across all 269 pairs:
    57073 3.600) 
    57074  
    57075 
    57076 > select subtract #13
    57077 
    57078 Nothing selected 
    57079 
    57080 > hide #!13 models
    57081 
    57082 > show #!13 models
    57083 
    57084 > fitmap #13 inMap #1
    57085 
    57086 Fit molecule CopG1_ Q9QZE5.pdb (#13) to map
    57087 relion_locres_filtered_20240326_GT.mrc (#1) using 2328 atoms 
    57088 average map value = 0.004732, steps = 72 
    57089 shifted from previous position = 2.67 
    57090 rotated from previous position = 6.72 degrees 
    57091 atoms outside contour = 1293, contour level = 0.0047281 
    57092  
    57093 Position of CopG1_ Q9QZE5.pdb (#13) relative to
    57094 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    57095 Matrix rotation and translation 
    57096 -0.18707219 0.85236259 -0.48834620 272.23506983 
    57097 0.06514904 -0.48526289 -0.87193780 156.24354137 
    57098 -0.98018346 -0.19493060 0.03524859 290.05062704 
    57099 Axis 0.58927078 0.42809784 -0.68519499 
    57100 Axis point 294.03599204 109.85965168 0.00000000 
    57101 Rotation angle (degrees) 144.93923178 
    57102 Shift along axis 28.56645803 
    57103  
    57104 
    57105 > hide #!13 models
    57106 
    57107 > show #!13 models
    57108 
    57109 > hide #!1 models
    57110 
    57111 > show #!25.6 models
    57112 
    57113 > show #!29 models
    57114 
    57115 > hide #!29 models
    57116 
    57117 > hide #!25.6 models
    57118 
    57119 > show #!26.2 models
    57120 
    57121 > hide #!26.2 models
    57122 
    57123 > show #!1 models
    57124 
    57125 > ui mousemode right select
    57126 
    57127 > hide #!1 models
    57128 
    57129 Drag select of 8 residues 
    57130 
    57131 > select up
    57132 
    57133 215 atoms, 218 bonds, 30 residues, 1 model selected 
    57134 Drag select of 14 residues 
    57135 
    57136 > select up
    57137 
    57138 238 atoms, 241 bonds, 33 residues, 1 model selected 
    57139 
    57140 > delete sel
    57141 
    57142 > fitmap #13 inMap #1
    57143 
    57144 Fit molecule CopG1_ Q9QZE5.pdb (#13) to map
    57145 relion_locres_filtered_20240326_GT.mrc (#1) using 2090 atoms 
    57146 average map value = 0.005123, steps = 36 
    57147 shifted from previous position = 0.196 
    57148 rotated from previous position = 0.651 degrees 
    57149 atoms outside contour = 1054, contour level = 0.0047281 
    57150  
    57151 Position of CopG1_ Q9QZE5.pdb (#13) relative to
    57152 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    57153 Matrix rotation and translation 
    57154 -0.19744764 0.85137415 -0.48597993 272.26620708 
    57155 0.06847691 -0.48255036 -0.87318731 156.25250448 
    57156 -0.97791889 -0.20568718 0.03697896 289.87675959 
    57157 Axis 0.58532639 0.43137797 -0.68651734 
    57158 Axis point 292.60102451 110.83100436 0.00000000 
    57159 Rotation angle (degrees) 145.23618902 
    57160 Shift along axis 27.76306241 
    57161  
    57162 
    57163 > show #!1 models
    57164 
    57165 > rename #13 "CopG1_ Q9QZE5_R609-G874.pdb"
    57166 
    57167 > hide #!13 models
    57168 
    57169 > show #!13 models
    57170 
    57171 > hide #!13 models
    57172 
    57173 > combine #9
    57174 
    57175 > hide #!18 models
    57176 
    57177 > show #!18 models
    57178 
    57179 > show #!9 models
    57180 
    57181 > hide #!9 models
    57182 
    57183 > show #!9 models
    57184 
    57185 > hide #!9 models
    57186 
    57187 > hide #!1 models
    57188 
    57189 > hide #!18 models
    57190 
    57191 > show #!18 models
    57192 
    57193 > show #!25.6 models
    57194 
    57195 > ui tool show Matchmaker
    57196 
    57197 The cached device pixel ratio value was stale on window expose. Please file a
    57198 QTBUG which explains how to reproduce. 
    57199 
    57200 > matchmaker #!18 to #25.6
    57201 
    57202 Parameters 
    57203 --- 
    57204 Chain pairing | bb 
    57205 Alignment algorithm | Needleman-Wunsch 
    57206 Similarity matrix | BLOSUM-62 
    57207 SS fraction | 0.3 
    57208 Gap open (HH/SS/other) | 18/18/6 
    57209 Gap extend | 1 
    57210 SS matrix |  |  | H | S | O 
    57211 ---|---|---|--- 
    57212 H | 6 | -9 | -6 
    57213 S |  | 6 | -6 
    57214 O |  |  | 4 
    57215 Iteration cutoff | 2 
    57216  
    57217 Matchmaker 5nzr_COPI_coat_leaf_2017.cif G, chain G (#25.6) with copy of
    57218 CopG_Q9QZE5_L311-T583, chain A (#18), sequence alignment score = 3090.4 
    57219 RMSD between 60 pruned atom pairs is 1.358 angstroms; (across all 242 pairs:
    57220 4.811) 
    57221  
    57222 
    57223 > hide #!25.6 models
    57224 
    57225 > show #!1 models
    57226 
    57227 > show #!29 models
    57228 
    57229 > show #!13 models
    57230 
    57231 > hide #!29 models
    57232 
    57233 > hide #!18 models
    57234 
    57235 > hide #!13 models
    57236 
    57237 > show #!26.2 models
    57238 
    57239 > show #!9 models
    57240 
    57241 > ui tool show Matchmaker
    57242 
    57243 The cached device pixel ratio value was stale on window expose. Please file a
    57244 QTBUG which explains how to reproduce. 
    57245 
    57246 > matchmaker #!25.6 to #9
    57247 
    57248 Parameters 
    57249 --- 
    57250 Chain pairing | bb 
    57251 Alignment algorithm | Needleman-Wunsch 
    57252 Similarity matrix | BLOSUM-62 
    57253 SS fraction | 0.3 
    57254 Gap open (HH/SS/other) | 18/18/6 
    57255 Gap extend | 1 
    57256 SS matrix |  |  | H | S | O 
    57257 ---|---|---|--- 
    57258 H | 6 | -9 | -6 
    57259 S |  | 6 | -6 
    57260 O |  |  | 4 
    57261 Iteration cutoff | 2 
    57262  
    57263 Matchmaker CopG_Q9QZE5_L311-T583, chain A (#9) with
    57264 5nzr_COPI_coat_leaf_2017.cif G, chain G (#25.6), sequence alignment score =
    57265 3090.4 
    57266 RMSD between 60 pruned atom pairs is 1.358 angstroms; (across all 242 pairs:
    57267 4.811) 
    57268  
    57269 
    57270 > show #!25.6 models
    57271 
    57272 > combine #13
    57273 
    57274 > ui tool show Matchmaker
    57275 
    57276 The cached device pixel ratio value was stale on window expose. Please file a
    57277 QTBUG which explains how to reproduce. 
    57278 
    57279 > matchmaker #!19 to #25.6
    57280 
    57281 Parameters 
    57282 --- 
    57283 Chain pairing | bb 
    57284 Alignment algorithm | Needleman-Wunsch 
    57285 Similarity matrix | BLOSUM-62 
    57286 SS fraction | 0.3 
    57287 Gap open (HH/SS/other) | 18/18/6 
    57288 Gap extend | 1 
    57289 SS matrix |  |  | H | S | O 
    57290 ---|---|---|--- 
    57291 H | 6 | -9 | -6 
    57292 S |  | 6 | -6 
    57293 O |  |  | 4 
    57294 Iteration cutoff | 2 
    57295  
    57296 Matchmaker 5nzr_COPI_coat_leaf_2017.cif G, chain G (#25.6) with copy of CopG1_
    57297 Q9QZE5_R609-G874.pdb, chain A (#19), sequence alignment score = 3065.8 
    57298 RMSD between 122 pruned atom pairs is 1.308 angstroms; (across all 266 pairs:
    57299 3.294) 
    57300  
    57301 
    57302 > hide #!25.6 models
    57303 
    57304 > fitmap #19 inMap #1
    57305 
    57306 Fit molecule copy of CopG1_ Q9QZE5_R609-G874.pdb (#19) to map
    57307 relion_locres_filtered_20240326_GT.mrc (#1) using 2090 atoms 
    57308 average map value = 0.005022, steps = 344 
    57309 shifted from previous position = 25.9 
    57310 rotated from previous position = 56.5 degrees 
    57311 atoms outside contour = 1255, contour level = 0.0047281 
    57312  
    57313 Position of copy of CopG1_ Q9QZE5_R609-G874.pdb (#19) relative to
    57314 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    57315 Matrix rotation and translation 
    57316 -0.55193647 -0.74723442 -0.37014437 274.69126079 
    57317 0.63814190 -0.66421874 0.38934353 305.66395297 
    57318 -0.53678771 -0.02131174 0.84344814 288.65866085 
    57319 Axis -0.28232731 0.11456803 0.95245234 
    57320 Axis point 116.95421290 212.51516264 0.00000000 
    57321 Rotation angle (degrees) 133.34214802 
    57322 Shift along axis 232.40009025 
    57323  
    57324 
    57325 > hide #!26.2 models
    57326 
    57327 > show #!26.2 models
    57328 
    57329 > show #!29 models
    57330 
    57331 > show #!18 models
    57332 
    57333 > show #!13 models
    57334 
    57335 > hide #!1 models
    57336 
    57337 > hide #!9 models
    57338 
    57339 > hide #!26.2 models
    57340 
    57341 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    57342 > dataset/Structure files/alphafold/CopG1_ Q9QZE5.pdb"
    57343 
    57344 CopG1_ Q9QZE5.pdb title: 
    57345 Alphafold monomer V2.0 prediction for coatomer subunit γ-1 (Q9QZE5) [more
    57346 info...] 
    57347  
    57348 Chain information for CopG1_ Q9QZE5.pdb #20 
    57349 --- 
    57350 Chain | Description | UniProt 
    57351 A | coatomer subunit γ-1 | COPG1_MOUSE 1-874 
    57352  
    57353 
    57354 > color #20 #38fb00ff
    57355 
    57356 > ui tool show Matchmaker
    57357 
    57358 The cached device pixel ratio value was stale on window expose. Please file a
    57359 QTBUG which explains how to reproduce. 
    57360 
    57361 > matchmaker #20 to #9
    57362 
    57363 Parameters 
    57364 --- 
    57365 Chain pairing | bb 
    57366 Alignment algorithm | Needleman-Wunsch 
    57367 Similarity matrix | BLOSUM-62 
    57368 SS fraction | 0.3 
    57369 Gap open (HH/SS/other) | 18/18/6 
    57370 Gap extend | 1 
    57371 SS matrix |  |  | H | S | O 
    57372 ---|---|---|--- 
    57373 H | 6 | -9 | -6 
    57374 S |  | 6 | -6 
    57375 O |  |  | 4 
    57376 Iteration cutoff | 2 
    57377  
    57378 Matchmaker CopG_Q9QZE5_L311-T583, chain A (#9) with CopG1_ Q9QZE5.pdb, chain A
    57379 (#20), sequence alignment score = 3547.2 
    57380 RMSD between 276 pruned atom pairs is 0.730 angstroms; (across all 277 pairs:
    57381 2.377) 
    57382  
    57383 
    57384 > show #!26.2 models
    57385 
    57386 > hide #!26.2 models
    57387 
    57388 > show #!26.2 models
    57389 
    57390 > hide #!26.2 models
    57391 
    57392 > hide #!18 models
    57393 
    57394 > hide #!19 models
    57395 
    57396 > hide #!13 models
    57397 
    57398 > hide #!29 models
    57399 
    57400 > show #!19 models
    57401 
    57402 > hide #20 models
    57403 
    57404 > hide #!19 models
    57405 
    57406 > show #!18 models
    57407 
    57408 > hide #!18 models
    57409 
    57410 > show #!18 models
    57411 
    57412 > hide #!18 models
    57413 
    57414 > show #!9 models
    57415 
    57416 > show #20 models
    57417 
    57418 > hide #!9 models
    57419 
    57420 > show #!9 models
    57421 
    57422 > hide #!9 models
    57423 
    57424 > select ~sel & ##selected
    57425 
    57426 Nothing selected 
    57427 
    57428 > select ~sel & ##selected
    57429 
    57430 Nothing selected 
    57431 
    57432 > ui tool show Matchmaker
    57433 
    57434 The cached device pixel ratio value was stale on window expose. Please file a
    57435 QTBUG which explains how to reproduce. 
    57436 
    57437 > matchmaker #20 to #26.2
    57438 
    57439 Parameters 
    57440 --- 
    57441 Chain pairing | bb 
    57442 Alignment algorithm | Needleman-Wunsch 
    57443 Similarity matrix | BLOSUM-62 
    57444 SS fraction | 0.3 
    57445 Gap open (HH/SS/other) | 18/18/6 
    57446 Gap extend | 1 
    57447 SS matrix |  |  | H | S | O 
    57448 ---|---|---|--- 
    57449 H | 6 | -9 | -6 
    57450 S |  | 6 | -6 
    57451 O |  |  | 4 
    57452 Iteration cutoff | 2 
    57453  
    57454 Matchmaker 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B, chain B (#26.2) with
    57455 CopG1_ Q9QZE5.pdb, chain A (#20), sequence alignment score = 1223.2 
    57456 RMSD between 214 pruned atom pairs is 0.825 angstroms; (across all 264 pairs:
    57457 2.836) 
    57458  
    57459 
    57460 > show #!26.2 models
    57461 
    57462 > hide #!26.2 models
    57463 
    57464 Drag select of 487 residues 
    57465 
    57466 > select up
    57467 
    57468 3979 atoms, 4051 bonds, 507 residues, 1 model selected 
    57469 
    57470 > delete sel
    57471 
    57472 > show #!26.2 models
    57473 
    57474 > hide #!26.2 models
    57475 
    57476 > show #!26.2 models
    57477 
    57478 > hide #!26.2 models
    57479 
    57480 > show #!26.2 models
    57481 
    57482 > hide #!26.2 models
    57483 
    57484 > show #!26.2 models
    57485 
    57486 > hide #!26.2 models
    57487 
    57488 > show #!26.2 models
    57489 
    57490 > hide #!26.2 models
    57491 
    57492 > hide #!20 models
    57493 
    57494 > show #!20 models
    57495 
    57496 Drag select of 14 residues 
    57497 
    57498 > select up
    57499 
    57500 129 atoms, 129 bonds, 16 residues, 1 model selected 
    57501 
    57502 > delete sel
    57503 
    57504 > show #!26.2 models
    57505 
    57506 > hide #!26.2 models
    57507 
    57508 > show #!26.2 models
    57509 
    57510 > hide #!26.2 models
    57511 
    57512 > show #!26.2 models
    57513 
    57514 > hide #!26.2 models
    57515 
    57516 > show #!26.2 models
    57517 
    57518 > hide #!26.2 models
    57519 
    57520 > show #!26.2 models
    57521 
    57522 > hide #!26.2 models
    57523 
    57524 > show #!26.2 models
    57525 
    57526 > hide #!26.2 models
    57527 
    57528 > show #!26.2 models
    57529 
    57530 > show #!1 models
    57531 
    57532 > hide #!20 models
    57533 
    57534 > show #!20 models
    57535 
    57536 > hide #!20 models
    57537 
    57538 > show #!20 models
    57539 
    57540 > hide #!26.2 models
    57541 
    57542 > hide #!20 models
    57543 
    57544 > show #!29 models
    57545 
    57546 > hide #!29 models
    57547 
    57548 > show #!26.2 models
    57549 
    57550 > hide #!1 models
    57551 
    57552 > show #!20 models
    57553 
    57554 > show #!9 models
    57555 
    57556 > hide #!20 models
    57557 
    57558 > show #!20 models
    57559 
    57560 > hide #!20 models
    57561 
    57562 > show #!20 models
    57563 
    57564 > hide #!20 models
    57565 
    57566 > show #!20 models
    57567 
    57568 > hide #!20 models
    57569 
    57570 > show #!20 models
    57571 
    57572 > hide #!9 models
    57573 
    57574 > show #!9 models
    57575 
    57576 > hide #!9 models
    57577 
    57578 > show #!9 models
    57579 
    57580 > hide #!9 models
    57581 
    57582 > show #!9 models
    57583 
    57584 > hide #!9 models
    57585 
    57586 > hide #!26.2 models
    57587 
    57588 > show #!26.2 models
    57589 
    57590 > hide #!26.2 models
    57591 
    57592 > show #!26.2 models
    57593 
    57594 > hide #!26.2 models
    57595 
    57596 > show #!18 models
    57597 
    57598 > hide #!18 models
    57599 
    57600 > show #!18 models
    57601 
    57602 > hide #!18 models
    57603 
    57604 > show #!18 models
    57605 
    57606 > hide #!18 models
    57607 
    57608 > show #!9 models
    57609 
    57610 > hide #!9 models
    57611 
    57612 > hide #!20 models
    57613 
    57614 > show #!9 models
    57615 
    57616 > show #!1 models
    57617 
    57618 > hide #!1 models
    57619 
    57620 > hide #!9 models
    57621 
    57622 > show #!9 models
    57623 
    57624 > hide #!9 models
    57625 
    57626 > show #!20 models
    57627 
    57628 Drag select of 24 residues 
    57629 
    57630 > select up
    57631 
    57632 197 atoms, 196 bonds, 26 residues, 1 model selected 
    57633 
    57634 > delete sel
    57635 
    57636 Drag select of 7 residues 
    57637 
    57638 > delete sel
    57639 
    57640 > fitmap #20 inMap #1
    57641 
    57642 Fit molecule CopG1_ Q9QZE5.pdb (#20) to map
    57643 relion_locres_filtered_20240326_GT.mrc (#1) using 2482 atoms 
    57644 average map value = 0.01112, steps = 52 
    57645 shifted from previous position = 0.772 
    57646 rotated from previous position = 5.6 degrees 
    57647 atoms outside contour = 865, contour level = 0.0047281 
    57648  
    57649 Position of CopG1_ Q9QZE5.pdb (#20) relative to
    57650 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    57651 Matrix rotation and translation 
    57652 0.55710873 -0.07627004 -0.82692971 263.00523089 
    57653 0.76700327 -0.33445249 0.54758334 289.99057464 
    57654 -0.31833291 -0.93932125 -0.12782703 276.73132173 
    57655 Axis -0.83372741 -0.28517707 0.47283470 
    57656 Axis point 0.00000000 231.68438433 124.14950695 
    57657 Rotation angle (degrees) 116.90968153 
    57658 Shift along axis -171.12516145 
    57659  
    57660 
    57661 > show #!1 models
    57662 
    57663 > hide #!1 models
    57664 
    57665 Drag select of 15 residues 
    57666 
    57667 > select up
    57668 
    57669 180 atoms, 182 bonds, 23 residues, 1 model selected 
    57670 
    57671 > delete sel
    57672 
    57673 > fitmap #20 inMap #1
    57674 
    57675 Fit molecule CopG1_ Q9QZE5.pdb (#20) to map
    57676 relion_locres_filtered_20240326_GT.mrc (#1) using 2302 atoms 
    57677 average map value = 0.01162, steps = 48 
    57678 shifted from previous position = 0.0621 
    57679 rotated from previous position = 0.185 degrees 
    57680 atoms outside contour = 743, contour level = 0.0047281 
    57681  
    57682 Position of CopG1_ Q9QZE5.pdb (#20) relative to
    57683 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    57684 Matrix rotation and translation 
    57685 0.55964495 -0.07618951 -0.82522281 262.95431078 
    57686 0.76574603 -0.33324062 0.55007609 290.10442387 
    57687 -0.31690778 -0.93975840 -0.12815461 276.70475087 
    57688 Axis -0.83455979 -0.28474256 0.47162658 
    57689 Axis point 0.00000000 232.00364407 123.73056407 
    57690 Rotation angle (degrees) 116.79984588 
    57691 Shift along axis -171.55485435 
    57692  
    57693 
    57694 > fitmap #20 inMap #1
    57695 
    57696 Fit molecule CopG1_ Q9QZE5.pdb (#20) to map
    57697 relion_locres_filtered_20240326_GT.mrc (#1) using 2302 atoms 
    57698 average map value = 0.01162, steps = 40 
    57699 shifted from previous position = 0.0116 
    57700 rotated from previous position = 0.00964 degrees 
    57701 atoms outside contour = 745, contour level = 0.0047281 
    57702  
    57703 Position of CopG1_ Q9QZE5.pdb (#20) relative to
    57704 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    57705 Matrix rotation and translation 
    57706 0.55953483 -0.07626531 -0.82529048 262.96525640 
    57707 0.76582416 -0.33317606 0.55000643 290.09547063 
    57708 -0.31691344 -0.93977514 -0.12801779 276.71363286 
    57709 Axis -0.83450860 -0.28476994 0.47170063 
    57710 Axis point 0.00000000 232.00972021 123.74632857 
    57711 Rotation angle (degrees) 116.79691707 
    57712 Shift along axis -171.53124161 
    57713  
    57714 
    57715 > show #!1 models
    57716 
    57717 > hide #!1 models
    57718 
    57719 > show #!9 models
    57720 
    57721 > show #!1 models
    57722 
    57723 > hide #!1 models
    57724 
    57725 > hide #!9 models
    57726 
    57727 > show #!9 models
    57728 
    57729 > hide #!9 models
    57730 
    57731 > rename #20 "CopG1_ Q9QZE5_K24-.pdb"
    57732 
    57733 > rename #20 "CopG1_ Q9QZE5_K24-H318.pdb"
    57734 
    57735 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    57736 > dataset/Chimera sessions/20240710_leaf_fitting_v42_labelled.cxs"
    57737 
    57738 > combine #20
    57739 
    57740 > ui tool show Matchmaker
    57741 
    57742 The cached device pixel ratio value was stale on window expose. Please file a
    57743 QTBUG which explains how to reproduce. 
    57744 
    57745 > matchmaker #!21 to #29
    57746 
    57747 Parameters 
    57748 --- 
    57749 Chain pairing | bb 
    57750 Alignment algorithm | Needleman-Wunsch 
    57751 Similarity matrix | BLOSUM-62 
    57752 SS fraction | 0.3 
    57753 Gap open (HH/SS/other) | 18/18/6 
    57754 Gap extend | 1 
    57755 SS matrix |  |  | H | S | O 
    57756 ---|---|---|--- 
    57757 H | 6 | -9 | -6 
    57758 S |  | 6 | -6 
    57759 O |  |  | 4 
    57760 Iteration cutoff | 2 
    57761  
    57762 Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B, chain B (#29)
    57763 with copy of CopG1_ Q9QZE5_K24-H318.pdb, chain A (#21), sequence alignment
    57764 score = 1214.8 
    57765 RMSD between 214 pruned atom pairs is 0.839 angstroms; (across all 260 pairs:
    57766 2.778) 
    57767  
    57768 
    57769 > hide #!20 models
    57770 
    57771 > show #!29 models
    57772 
    57773 > show #!1 models
    57774 
    57775 > hide #!1 models
    57776 
    57777 > show #!1 models
    57778 
    57779 > hide #!1 models
    57780 
    57781 > hide #!21 models
    57782 
    57783 > hide #!29 models
    57784 
    57785 > show #!18 models
    57786 
    57787 > show #!21 models
    57788 
    57789 > show #!1 models
    57790 
    57791 > hide #!21 models
    57792 
    57793 > hide #!18 models
    57794 
    57795 > hide #!1 models
    57796 
    57797 > show #!1 models
    57798 
    57799 > show #10 models
    57800 
    57801 > show #12 models
    57802 
    57803 > show #26.3 models
    57804 
    57805 > show #28 models
    57806 
    57807 > hide #!1 models
    57808 
    57809 > hide #26.3 models
    57810 
    57811 > show #26.3 models
    57812 
    57813 > hide #26.3 models
    57814 
    57815 > hide #28 models
    57816 
    57817 > show #28 models
    57818 
    57819 > hide #10 models
    57820 
    57821 > show #10 models
    57822 
    57823 > hide #10 models
    57824 
    57825 > show #10 models
    57826 
    57827 > hide #12 models
    57828 
    57829 > show #12 models
    57830 
    57831 > show #!1 models
    57832 
    57833 > show #!9 models
    57834 
    57835 > hide #!9 models
    57836 
    57837 > show #!15 models
    57838 
    57839 > hide #!15 models
    57840 
    57841 > show #!16 models
    57842 
    57843 > hide #!16 models
    57844 
    57845 > show #!15 models
    57846 
    57847 > hide #!15 models
    57848 
    57849 > show #32.1 models
    57850 
    57851 > hide #32.1 models
    57852 
    57853 > show #!40 models
    57854 
    57855 > hide #!40 models
    57856 
    57857 > show #!29 models
    57858 
    57859 > show #!18 models
    57860 
    57861 > hide #!18 models
    57862 
    57863 > show #!21 models
    57864 
    57865 > hide #!29 models
    57866 
    57867 > hide #28 models
    57868 
    57869 > show #28 models
    57870 
    57871 > hide #!21 models
    57872 
    57873 > hide #28 models
    57874 
    57875 > show #28 models
    57876 
    57877 > hide #!1 models
    57878 
    57879 > hide #12 models
    57880 
    57881 > show #12 models
    57882 
    57883 > hide #10 models
    57884 
    57885 > show #!1 models
    57886 
    57887 > hide #!1 models
    57888 
    57889 Drag select of 17 residues 
    57890 
    57891 > select up
    57892 
    57893 200 atoms, 202 bonds, 25 residues, 1 model selected 
    57894 
    57895 > select clear
    57896 
    57897 Drag select of 24 residues 
    57898 
    57899 > show #!1 models
    57900 
    57901 > hide #!1 models
    57902 
    57903 > show #!1 models
    57904 
    57905 > hide #!1 models
    57906 
    57907 > delete sel
    57908 
    57909 > show #!1 models
    57910 
    57911 > hide #!1 models
    57912 
    57913 > hide #28 models
    57914 
    57915 > rename #12 "copy of CopZ1_P61924_M1-V153.pdb"
    57916 
    57917 > hide #12 models
    57918 
    57919 > show #12 models
    57920 
    57921 > show #10 models
    57922 
    57923 Drag select of 23 residues 
    57924 
    57925 > delete sel
    57926 
    57927 Drag select of 1 residues 
    57928 
    57929 > delete sel
    57930 
    57931 > rename #10 CopZ1_P61924_M1-V153.pdb
    57932 
    57933 > hide #10 models
    57934 
    57935 > show #26.3 models
    57936 
    57937 > show #10 models
    57938 
    57939 > hide #10 models
    57940 
    57941 > hide #12 models
    57942 
    57943 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    57944 > dataset/Chimera sessions/20240710_leaf_fitting_v42_labelled.cxs"
    57945 
    57946 > hide #26.3 models
    57947 
    57948 > show #!24 models
    57949 
    57950 > show #11 models
    57951 
    57952 > hide #11 models
    57953 
    57954 > show #11 models
    57955 
    57956 > show #!1 models
    57957 
    57958 > hide #!1 models
    57959 
    57960 Drag select of 20 residues 
    57961 
    57962 > select up
    57963 
    57964 174 atoms, 173 bonds, 23 residues, 1 model selected 
    57965 
    57966 > delete sel
    57967 
    57968 Drag select of 16 residues 
    57969 
    57970 > select up
    57971 
    57972 281 atoms, 280 bonds, 38 residues, 1 model selected 
    57973 
    57974 > select down
    57975 
    57976 100 atoms, 16 residues, 1 model selected 
    57977 Drag select of 4 residues 
    57978 Drag select of 8 residues 
    57979 
    57980 > delete sel
    57981 
    57982 Drag select of 11 residues 
    57983 
    57984 > delete sel
    57985 
    57986 Drag select of 3 residues 
    57987 Drag select of 5 residues 
    57988 
    57989 > delete sel
    57990 
    57991 > select clear
    57992 
    57993 Drag select of 6 residues 
    57994 
    57995 > delete sel
    57996 
    57997 Drag select of 1 residues 
    57998 
    57999 > delete sel
    58000 
    58001 > show #!1 models
    58002 
    58003 > select #11/A:55
    58004 
    58005 6 atoms, 5 bonds, 1 residue, 1 model selected 
    58006 
    58007 > delete sel
    58008 
    58009 > hide #!1 models
    58010 
    58011 > hide #!24 models
    58012 
    58013 > rename #11 "Golph3_ Q9CRA5_K56-K298.pdb"
    58014 
    58015 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    58016 > dataset/Chimera sessions/20240710_leaf_fitting_v42_labelled.cxs"
    58017 
    58018 > hide #11 models
    58019 
    58020 > show #!40 models
    58021 
    58022 > show #32.1 models
    58023 
    58024 > hide #32.1 models
    58025 
    58026 > show #32.1 models
    58027 
    58028 > hide #32.1 models
    58029 
    58030 > show #!16 models
    58031 
    58032 > hide #!16 models
    58033 
    58034 > show #!16 models
    58035 
    58036 > hide #!16 models
    58037 
    58038 > show #!16 models
    58039 
    58040 > hide #!16 models
    58041 
    58042 > show #!15 models
    58043 
    58044 > hide #!15 models
    58045 
    58046 > show #!4 models
    58047 
    58048 > hide #!4 models
    58049 
    58050 > ui tool show Matchmaker
    58051 
    58052 The cached device pixel ratio value was stale on window expose. Please file a
    58053 QTBUG which explains how to reproduce. 
    58054 
    58055 > matchmaker #!40 to #4
    58056 
    58057 Parameters 
    58058 --- 
    58059 Chain pairing | bb 
    58060 Alignment algorithm | Needleman-Wunsch 
    58061 Similarity matrix | BLOSUM-62 
    58062 SS fraction | 0.3 
    58063 Gap open (HH/SS/other) | 18/18/6 
    58064 Gap extend | 1 
    58065 SS matrix |  |  | H | S | O 
    58066 ---|---|---|--- 
    58067 H | 6 | -9 | -6 
    58068 S |  | 6 | -6 
    58069 O |  |  | 4 
    58070 Iteration cutoff | 2 
    58071  
    58072 Matchmaker CopB_Q9JIF7_P395-L953.pdb, chain A (#4) with
    58073 fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain B (#40), sequence
    58074 alignment score = 4110.5 
    58075 RMSD between 179 pruned atom pairs is 1.370 angstroms; (across all 520 pairs:
    58076 5.457) 
    58077  
    58078 
    58079 > show #!4 models
    58080 
    58081 > hide #!4 models
    58082 
    58083 > show #!4 models
    58084 
    58085 > hide #!4 models
    58086 
    58087 > hide #40.1 models
    58088 
    58089 > show #40.1 models
    58090 
    58091 > hide #!40 models
    58092 
    58093 > show #!40 models
    58094 
    58095 > hide #40.1 models
    58096 
    58097 > show #40.1 models
    58098 
    58099 > hide #40.2 models
    58100 
    58101 > show #40.2 models
    58102 
    58103 > hide #40.1 models
    58104 
    58105 > show #40.1 models
    58106 
    58107 > select add #40
    58108 
    58109 39508 atoms, 40254 bonds, 5000 residues, 1 model selected 
    58110 
    58111 > show #!4 models
    58112 
    58113 > ui mousemode right "translate selected models"
    58114 
    58115 > view matrix models
    58116 > #40,-0.45175,0.88042,0.14417,282.18,0.88959,0.45675,-0.0017694,344.15,-0.067408,0.12745,-0.98955,350.14
    58117 
    58118 > ui mousemode right "move picked models"
    58119 
    58120 > ui mousemode right "rotate selected models"
    58121 
    58122 > view matrix models
    58123 > #40,-0.48319,0.8755,0.0039949,280.87,0.85474,0.47271,-0.21439,341.94,-0.18959,-0.10018,-0.97674,352.43
    58124 
    58125 > ui mousemode right "translate selected models"
    58126 
    58127 > view matrix models
    58128 > #40,-0.48319,0.8755,0.0039949,278.81,0.85474,0.47271,-0.21439,341.94,-0.18959,-0.10018,-0.97674,350.53
    58129 
    58130 > fitmap #40 inMap #1
    58131 
    58132 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    58133 relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms 
    58134 average map value = 0.005223, steps = 200 
    58135 shifted from previous position = 8.42 
    58136 rotated from previous position = 12.5 degrees 
    58137 atoms outside contour = 24977, contour level = 0.0047281 
    58138  
    58139 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    58140 relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    58141 Matrix rotation and translation 
    58142 -0.52028952 0.84088907 0.14901137 220.07158255 
    58143 0.84302980 0.53359831 -0.06762847 260.64421830 
    58144 -0.13638026 0.09043464 -0.98652015 268.86282147 
    58145 Axis 0.48448953 0.87477245 0.00656169 
    58146 Axis point 50.37234045 0.00000000 130.77427705 
    58147 Rotation angle (degrees) 170.61176661 
    58148 Shift along axis 336.39095332 
    58149  
    58150 
    58151 > fitmap #40 inMap #1
    58152 
    58153 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    58154 relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms 
    58155 average map value = 0.005222, steps = 64 
    58156 shifted from previous position = 0.0384 
    58157 rotated from previous position = 0.0256 degrees 
    58158 atoms outside contour = 24974, contour level = 0.0047281 
    58159  
    58160 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    58161 relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    58162 Matrix rotation and translation 
    58163 -0.52062312 0.84070985 0.14885742 220.03596019 
    58164 0.84281462 0.53392261 -0.06775084 260.63448528 
    58165 -0.13643714 0.09018656 -0.98653500 268.85402522 
    58166 Axis 0.48432100 0.87486657 0.00645437 
    58167 Axis point 50.38436969 0.00000000 130.78499451 
    58168 Rotation angle (degrees) 170.61600734 
    58169 Shift along axis 336.32371732 
    58170  
    58171 
    58172 > fitmap #40 inMap #1
    58173 
    58174 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    58175 relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms 
    58176 average map value = 0.005223, steps = 104 
    58177 shifted from previous position = 0.0365 
    58178 rotated from previous position = 0.0151 degrees 
    58179 atoms outside contour = 24982, contour level = 0.0047281 
    58180  
    58181 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    58182 relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    58183 Matrix rotation and translation 
    58184 -0.52041410 0.84082219 0.14895373 220.07025505 
    58185 0.84294218 0.53372423 -0.06772691 260.64629599 
    58186 -0.13644650 0.09031335 -0.98652210 268.85494797 
    58187 Axis 0.48442493 0.87480870 0.00649820 
    58188 Axis point 50.38369375 0.00000000 130.77854463 
    58189 Rotation angle (degrees) 170.61187337 
    58190 Shift along axis 336.37023767 
    58191  
    58192 
    58193 > fitmap #40 inMap #1
    58194 
    58195 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    58196 relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms 
    58197 average map value = 0.005222, steps = 48 
    58198 shifted from previous position = 0.0459 
    58199 rotated from previous position = 0.0282 degrees 
    58200 atoms outside contour = 24966, contour level = 0.0047281 
    58201  
    58202 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    58203 relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    58204 Matrix rotation and translation 
    58205 -0.52081360 0.84060651 0.14877464 220.02590390 
    58206 0.84270437 0.53409979 -0.06772571 260.63740010 
    58207 -0.13639118 0.09010057 -0.98654921 268.85096863 
    58208 Axis 0.48422748 0.87491846 0.00643644 
    58209 Axis point 50.38967324 0.00000000 130.78640422 
    58210 Rotation angle (degrees) 170.62084158 
    58211 Shift along axis 336.30950487 
    58212  
    58213 
    58214 > fitmap #40 inMap #1
    58215 
    58216 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    58217 relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms 
    58218 average map value = 0.005222, steps = 48 
    58219 shifted from previous position = 0.0366 
    58220 rotated from previous position = 0.0134 degrees 
    58221 atoms outside contour = 24967, contour level = 0.0047281 
    58222  
    58223 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    58224 relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    58225 Matrix rotation and translation 
    58226 -0.52067236 0.84069681 0.14875876 220.05486438 
    58227 0.84276997 0.53397284 -0.06791016 260.65467963 
    58228 -0.13652500 0.09001047 -0.98653892 268.83774949 
    58229 Axis 0.48429600 0.87488112 0.00635777 
    58230 Axis point 50.39301899 0.00000000 130.79007829 
    58231 Rotation angle (degrees) 170.61652318 
    58232 Shift along axis 336.32275464 
    58233  
    58234 
    58235 > fitmap #40 inMap #1
    58236 
    58237 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    58238 relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms 
    58239 average map value = 0.005223, steps = 44 
    58240 shifted from previous position = 0.0138 
    58241 rotated from previous position = 0.018 degrees 
    58242 atoms outside contour = 24974, contour level = 0.0047281 
    58243  
    58244 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    58245 relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    58246 Matrix rotation and translation 
    58247 -0.52048878 0.84078702 0.14889135 220.06131970 
    58248 0.84289793 0.53379198 -0.06774370 260.65567170 
    58249 -0.13643503 0.09024038 -0.98653037 268.84933649 
    58250 Axis 0.48438915 0.87482870 0.00647220 
    58251 Axis point 50.37990075 0.00000000 130.78014813 
    58252 Rotation angle (degrees) 170.61454145 
    58253 Shift along axis 336.36442614 
    58254  
    58255 
    58256 > show #!1 models
    58257 
    58258 > hide #!1 models
    58259 
    58260 > hide #!4 models
    58261 
    58262 > show #!4 models
    58263 
    58264 > view matrix models
    58265 > #40,-0.53175,0.83455,0.14409,280.1,0.83762,0.54337,-0.055977,340.95,-0.12501,0.090928,-0.98798,350.27
    58266 
    58267 > view matrix models
    58268 > #40,-0.53175,0.83455,0.14409,281.03,0.83762,0.54337,-0.055977,340.26,-0.12501,0.090928,-0.98798,350.34
    58269 
    58270 > ui mousemode right "rotate selected models"
    58271 
    58272 > view matrix models
    58273 > #40,-0.41151,0.87987,0.23768,281.72,0.86546,0.459,-0.20074,339.93,-0.28572,0.12309,-0.95037,349.89
    58274 
    58275 > ui mousemode right "translate selected models"
    58276 
    58277 > view matrix models
    58278 > #40,-0.41151,0.87987,0.23768,280.57,0.86546,0.459,-0.20074,340.91,-0.28572,0.12309,-0.95037,350.32
    58279 
    58280 > ui mousemode right "rotate selected models"
    58281 
    58282 > view matrix models
    58283 > #40,-0.61633,0.72128,0.31606,282.47,0.75468,0.65564,-0.024568,340.07,-0.22494,0.22338,-0.94842,349.41
    58284 
    58285 > ui mousemode right "translate selected models"
    58286 
    58287 > view matrix models
    58288 > #40,-0.61633,0.72128,0.31606,282.55,0.75468,0.65564,-0.024568,340.73,-0.22494,0.22338,-0.94842,347.75
    58289 
    58290 > ui tool show Matchmaker
    58291 
    58292 The cached device pixel ratio value was stale on window expose. Please file a
    58293 QTBUG which explains how to reproduce. 
    58294 
    58295 > matchmaker #!40 to #4
    58296 
    58297 Parameters 
    58298 --- 
    58299 Chain pairing | bb 
    58300 Alignment algorithm | Needleman-Wunsch 
    58301 Similarity matrix | BLOSUM-62 
    58302 SS fraction | 0.3 
    58303 Gap open (HH/SS/other) | 18/18/6 
    58304 Gap extend | 1 
    58305 SS matrix |  |  | H | S | O 
    58306 ---|---|---|--- 
    58307 H | 6 | -9 | -6 
    58308 S |  | 6 | -6 
    58309 O |  |  | 4 
    58310 Iteration cutoff | 2 
    58311  
    58312 Matchmaker CopB_Q9JIF7_P395-L953.pdb, chain A (#4) with
    58313 fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain B (#40), sequence
    58314 alignment score = 4110.5 
    58315 RMSD between 179 pruned atom pairs is 1.370 angstroms; (across all 520 pairs:
    58316 5.457) 
    58317  
    58318 
    58319 > ui mousemode right "rotate selected models"
    58320 
    58321 > view matrix models
    58322 > #40,-0.31935,0.83114,0.45521,287.02,0.88268,0.43568,-0.17625,341.17,-0.34481,0.34552,-0.87277,346.76
    58323 
    58324 > view matrix models
    58325 > #40,-0.44367,0.86607,0.23039,284.23,0.80522,0.49809,-0.32175,338.94,-0.39341,0.042765,-0.91837,349.54
    58326 
    58327 > ui mousemode right "translate selected models"
    58328 
    58329 > view matrix models
    58330 > #40,-0.44367,0.86607,0.23039,282.32,0.80522,0.49809,-0.32175,339.86,-0.39341,0.042765,-0.91837,348.1
    58331 
    58332 > fitmap #40 inMap #1
    58333 
    58334 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    58335 relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms 
    58336 average map value = 0.005223, steps = 164 
    58337 shifted from previous position = 4.58 
    58338 rotated from previous position = 16.7 degrees 
    58339 atoms outside contour = 24975, contour level = 0.0047281 
    58340  
    58341 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    58342 relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    58343 Matrix rotation and translation 
    58344 -0.52048952 0.84078158 0.14891953 220.04518033 
    58345 0.84289479 0.53379676 -0.06774517 260.61986334 
    58346 -0.13645165 0.09026284 -0.98652602 268.86066498 
    58347 Axis 0.48438709 0.87482980 0.00647824 
    58348 Axis point 50.38454975 0.00000000 130.78449689 
    58349 Rotation angle (degrees) 170.61306625 
    58350 Shift along axis 336.32681054 
    58351  
    58352 
    58353 > fitmap #40 inMap #1
    58354 
    58355 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    58356 relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms 
    58357 average map value = 0.005223, steps = 64 
    58358 shifted from previous position = 0.0314 
    58359 rotated from previous position = 0.0123 degrees 
    58360 atoms outside contour = 24976, contour level = 0.0047281 
    58361  
    58362 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    58363 relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    58364 Matrix rotation and translation 
    58365 -0.52035216 0.84085379 0.14899177 220.06715093 
    58366 0.84299036 0.53365933 -0.06763871 260.64221906 
    58367 -0.13638511 0.09040267 -0.98652242 268.86235387 
    58368 Axis 0.48445775 0.87479014 0.00654940 
    58369 Axis point 50.37588260 0.00000000 130.77563938 
    58370 Rotation angle (degrees) 170.61244765 
    58371 Shift along axis 336.38136726 
    58372  
    58373 
    58374 > fitmap #40 inMap #1
    58375 
    58376 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    58377 relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms 
    58378 average map value = 0.005223, steps = 44 
    58379 shifted from previous position = 0.00595 
    58380 rotated from previous position = 0.00214 degrees 
    58381 atoms outside contour = 24974, contour level = 0.0047281 
    58382  
    58383 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    58384 relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    58385 Matrix rotation and translation 
    58386 -0.52032365 0.84086898 0.14900562 220.06753255 
    58387 0.84300489 0.53363422 -0.06765573 260.63688843 
    58388 -0.13640410 0.09040958 -0.98651916 268.86496746 
    58389 Axis 0.48447124 0.87478269 0.00654655 
    58390 Axis point 50.37676888 0.00000000 130.77712244 
    58391 Rotation angle (degrees) 170.61127680 
    58392 Shift along axis 336.37716843 
    58393  
    58394 
    58395 > fitmap #40 inMap #1
    58396 
    58397 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    58398 relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms 
    58399 average map value = 0.005223, steps = 48 
    58400 shifted from previous position = 0.0189 
    58401 rotated from previous position = 0.00916 degrees 
    58402 atoms outside contour = 24967, contour level = 0.0047281 
    58403  
    58404 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    58405 relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    58406 Matrix rotation and translation 
    58407 -0.52027091 0.84090187 0.14900419 220.05680972 
    58408 0.84301710 0.53359531 -0.06781028 260.63941243 
    58409 -0.13652973 0.09033336 -0.98650876 268.84978446 
    58410 Axis 0.48449382 0.87477068 0.00648028 
    58411 Axis point 50.37255935 0.00000000 130.77855079 
    58412 Rotation angle (degrees) 170.60702404 
    58413 Shift along axis 336.35810393 
    58414  
    58415 
    58416 > fitmap #40 inMap #1
    58417 
    58418 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    58419 relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms 
    58420 average map value = 0.005223, steps = 80 
    58421 shifted from previous position = 0.0104 
    58422 rotated from previous position = 0.00932 degrees 
    58423 atoms outside contour = 24970, contour level = 0.0047281 
    58424  
    58425 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    58426 relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    58427 Matrix rotation and translation 
    58428 -0.52038816 0.84083756 0.14895765 220.05287043 
    58429 0.84296038 0.53369740 -0.06771195 260.64877964 
    58430 -0.13643306 0.09032890 -0.98652254 268.84767937 
    58431 Axis 0.48443866 0.87480103 0.00650702 
    58432 Axis point 50.37095373 0.00000000 130.77458825 
    58433 Rotation angle (degrees) 170.61210637 
    58434 Shift along axis 336.36733609 
    58435  
    58436 
    58437 > fitmap #40 inMap #1
    58438 
    58439 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    58440 relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms 
    58441 average map value = 0.005222, steps = 60 
    58442 shifted from previous position = 0.012 
    58443 rotated from previous position = 0.0197 degrees 
    58444 atoms outside contour = 24967, contour level = 0.0047281 
    58445  
    58446 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    58447 relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    58448 Matrix rotation and translation 
    58449 -0.52065246 0.84069698 0.14882751 220.04216754 
    58450 0.84279516 0.53395016 -0.06777583 260.64388132 
    58451 -0.13644540 0.09014345 -0.98653780 268.84741201 
    58452 Axis 0.48430666 0.87487465 0.00643470 
    58453 Axis point 50.38648022 0.00000000 130.78444062 
    58454 Rotation angle (degrees) 170.61681330 
    58455 Shift along axis 336.32856452 
    58456  
    58457 
    58458 > view matrix models
    58459 > #40,-0.53191,0.83446,0.14403,279.19,0.83752,0.54353,-0.05601,338.7,-0.12502,0.090833,-0.98799,349.49
    58460 
    58461 > view matrix models
    58462 > #40,-0.53191,0.83446,0.14403,281.55,0.83752,0.54353,-0.05601,343.34,-0.12502,0.090833,-0.98799,350.66
    58463 
    58464 > ui mousemode right "rotate selected models"
    58465 
    58466 > view matrix models
    58467 > #40,-0.53273,0.81883,0.21381,282.36,0.8282,0.55639,-0.067245,343.07,-0.17402,0.14125,-0.97456,350.1
    58468 
    58469 > view matrix models
    58470 > #40,-0.59069,0.78688,0.17862,282.23,0.75978,0.61694,-0.20523,340.96,-0.27169,0.01448,-0.96228,351.34
    58471 
    58472 > view matrix models
    58473 > #40,-0.60784,0.77483,0.17371,282.27,0.75759,0.63141,-0.16548,341.16,-0.2379,0.031016,-0.97079,351.17
    58474 
    58475 > ui mousemode right "translate selected models"
    58476 
    58477 > view matrix models
    58478 > #40,-0.60784,0.77483,0.17371,283.1,0.75759,0.63141,-0.16548,341.45,-0.2379,0.031016,-0.97079,350.66
    58479 
    58480 > hide #!4 models
    58481 
    58482 > select subtract #40
    58483 
    58484 2 models selected 
    58485 
    58486 > show #!1 models
    58487 
    58488 > select add #40
    58489 
    58490 39508 atoms, 40254 bonds, 5000 residues, 1 model selected 
    58491 
    58492 > view matrix models
    58493 > #40,-0.60784,0.77483,0.17371,282.46,0.75759,0.63141,-0.16548,341.97,-0.2379,0.031016,-0.97079,350.98
    58494 
    58495 > select subtract #40
    58496 
    58497 2 models selected 
    58498 
    58499 > hide #!1 models
    58500 
    58501 > show #!15 models
    58502 
    58503 > hide #!15 models
    58504 
    58505 > show #!16 models
    58506 
    58507 > fitmap #40 inMap #1
    58508 
    58509 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    58510 relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms 
    58511 average map value = 0.005223, steps = 144 
    58512 shifted from previous position = 8 
    58513 rotated from previous position = 9.35 degrees 
    58514 atoms outside contour = 24973, contour level = 0.0047281 
    58515  
    58516 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    58517 relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    58518 Matrix rotation and translation 
    58519 -0.52035327 0.84085371 0.14898840 220.06435873 
    58520 0.84298688 0.53366200 -0.06766092 260.64248984 
    58521 -0.13640238 0.09038768 -0.98652140 268.85959648 
    58522 Axis 0.48445666 0.87479082 0.00653869 
    58523 Axis point 50.37526868 0.00000000 130.77574819 
    58524 Rotation angle (degrees) 170.61199384 
    58525 Shift along axis 336.37729411 
    58526  
    58527 
    58528 > fitmap #40 inMap #1
    58529 
    58530 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    58531 relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms 
    58532 average map value = 0.005223, steps = 48 
    58533 shifted from previous position = 0.0189 
    58534 rotated from previous position = 0.0144 degrees 
    58535 atoms outside contour = 24978, contour level = 0.0047281 
    58536  
    58537 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    58538 relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    58539 Matrix rotation and translation 
    58540 -0.52020195 0.84092692 0.14910355 220.06127059 
    58541 0.84308960 0.53351511 -0.06753935 260.63173968 
    58542 -0.13634465 0.09057354 -0.98651234 268.87432330 
    58543 Axis 0.48453259 0.87474811 0.00662749 
    58544 Axis point 50.36493224 0.00000000 130.77083377 
    58545 Rotation angle (degrees) 170.60962523 
    58546 Shift along axis 336.39593915 
    58547  
    58548 
    58549 > show #!1 models
    58550 
    58551 > hide #!1 models
    58552 
    58553 > hide #!16 models
    58554 
    58555 > show #!16 models
    58556 
    58557 > hide #!16 models
    58558 
    58559 > show #!16 models
    58560 
    58561 > hide #!16 models
    58562 
    58563 > hide #!40 models
    58564 
    58565 > show #!40 models
    58566 
    58567 > show #!1 models
    58568 
    58569 > hide #!1 models
    58570 
    58571 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    58572 > dataset/Chimera sessions/20240710_leaf_fitting_v43_labelled.cxs"
    58573 
    58574 > hide #!40 models
    58575 
    58576 > close #11
    58577 
    58578 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    58579 > dataset/Structure files/alphafold/GOLPH3-Q9H4A6-human.pdb"
    58580 
    58581 GOLPH3-Q9H4A6-human.pdb title: 
    58582 Alphafold monomer V2.0 prediction for golgi phosphoprotein 3 (Q9H4A6) [more
    58583 info...] 
    58584  
    58585 Chain information for GOLPH3-Q9H4A6-human.pdb #11 
    58586 --- 
    58587 Chain | Description | UniProt 
    58588 A | golgi phosphoprotein 3 | GOLP3_HUMAN 1-298 
    58589  
    58590 
    58591 > ui tool show Matchmaker
    58592 
    58593 The cached device pixel ratio value was stale on window expose. Please file a
    58594 QTBUG which explains how to reproduce. 
    58595 
    58596 > matchmaker #11 to #24
    58597 
    58598 Parameters 
    58599 --- 
    58600 Chain pairing | bb 
    58601 Alignment algorithm | Needleman-Wunsch 
    58602 Similarity matrix | BLOSUM-62 
    58603 SS fraction | 0.3 
    58604 Gap open (HH/SS/other) | 18/18/6 
    58605 Gap extend | 1 
    58606 SS matrix |  |  | H | S | O 
    58607 ---|---|---|--- 
    58608 H | 6 | -9 | -6 
    58609 S |  | 6 | -6 
    58610 O |  |  | 4 
    58611 Iteration cutoff | 2 
    58612  
    58613 Matchmaker 3kn1_Golph3_xtal.cif, chain A (#24) with GOLPH3-Q9H4A6-human.pdb,
    58614 chain A (#11), sequence alignment score = 1244.7 
    58615 RMSD between 221 pruned atom pairs is 0.675 angstroms; (across all 239 pairs:
    58616 1.219) 
    58617  
    58618 
    58619 > color #11 #b21effff
    58620 
    58621 > show #!24 models
    58622 
    58623 > ui mousemode right select
    58624 
    58625 Drag select of 30 residues 
    58626 
    58627 > delete sel
    58628 
    58629 > show #!1 models
    58630 
    58631 > hide #!1 models
    58632 
    58633 Drag select of 13 residues 
    58634 
    58635 > delete sel
    58636 
    58637 > show #!1 models
    58638 
    58639 > hide #!1 models
    58640 
    58641 Drag select of 2 residues 
    58642 
    58643 > select up
    58644 
    58645 147 atoms, 146 bonds, 18 residues, 1 model selected 
    58646 
    58647 > select down
    58648 
    58649 19 atoms, 2 residues, 1 model selected 
    58650 
    58651 > delete sel
    58652 
    58653 > show #!1 models
    58654 
    58655 > hide #!1 models
    58656 
    58657 Drag select of 1 residues 
    58658 
    58659 > delete sel
    58660 
    58661 > show #!1 models
    58662 
    58663 > hide #!1 models
    58664 
    58665 > hide #11 models
    58666 
    58667 > show #11 models
    58668 
    58669 > hide #!24 models
    58670 
    58671 > show #!24 models
    58672 
    58673 > show #!1 models
    58674 
    58675 > hide #!1 models
    58676 
    58677 > rename #11 GOLPH3-Q9H4A6-human_Q47-.pdb
    58678 
    58679 > rename #11 GOLPH3-Q9H4A6-human_Q47-K298.pdb
    58680 
    58681 > show #!1 models
    58682 
    58683 > hide #11 models
    58684 
    58685 > show #11 models
    58686 
    58687 > hide #!24 models
    58688 
    58689 > show #!24 models
    58690 
    58691 > hide #!24 models
    58692 
    58693 > show #!24 models
    58694 
    58695 > hide #11 models
    58696 
    58697 > hide #!24 models
    58698 
    58699 > show #11 models
    58700 
    58701 > hide #11 models
    58702 
    58703 > close #5
    58704 
    58705 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    58706 > dataset/Structure files/alphafold/Arf1-P84077-human.pdb"
    58707 
    58708 Arf1-P84077-human.pdb title: 
    58709 Alphafold monomer V2.0 prediction for adp-ribosylation factor 1 (P84077) [more
    58710 info...] 
    58711  
    58712 Chain information for Arf1-P84077-human.pdb #5 
    58713 --- 
    58714 Chain | Description | UniProt 
    58715 A | adp-ribosylation factor 1 | ARF1_HUMAN 1-181 
    58716  
    58717 
    58718 > color #5 #ff269dff
    58719 
    58720 > close #6
    58721 
    58722 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    58723 > dataset/Structure files/alphafold/Arf1-P84077-human.pdb"
    58724 
    58725 Arf1-P84077-human.pdb title: 
    58726 Alphafold monomer V2.0 prediction for adp-ribosylation factor 1 (P84077) [more
    58727 info...] 
    58728  
    58729 Chain information for Arf1-P84077-human.pdb #6 
    58730 --- 
    58731 Chain | Description | UniProt 
    58732 A | adp-ribosylation factor 1 | ARF1_HUMAN 1-181 
    58733  
    58734 
    58735 > color #6 #ff15a8ff
    58736 
    58737 > show #!26.1 models
    58738 
    58739 > hide #!26.1 models
    58740 
    58741 > show #!26.1 models
    58742 
    58743 > show #!35 models
    58744 
    58745 > show #!36 models
    58746 
    58747 > show #!37 models
    58748 
    58749 > hide #6 models
    58750 
    58751 > hide #5 models
    58752 
    58753 > ui tool show Matchmaker
    58754 
    58755 The cached device pixel ratio value was stale on window expose. Please file a
    58756 QTBUG which explains how to reproduce. 
    58757 
    58758 > matchmaker #5 to #26.1
    58759 
    58760 Parameters 
    58761 --- 
    58762 Chain pairing | bb 
    58763 Alignment algorithm | Needleman-Wunsch 
    58764 Similarity matrix | BLOSUM-62 
    58765 SS fraction | 0.3 
    58766 Gap open (HH/SS/other) | 18/18/6 
    58767 Gap extend | 1 
    58768 SS matrix |  |  | H | S | O 
    58769 ---|---|---|--- 
    58770 H | 6 | -9 | -6 
    58771 S |  | 6 | -6 
    58772 O |  |  | 4 
    58773 Iteration cutoff | 2 
    58774  
    58775 Matchmaker 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#26.1) with
    58776 Arf1-P84077-human.pdb, chain A (#5), sequence alignment score = 714.3 
    58777 RMSD between 158 pruned atom pairs is 0.857 angstroms; (across all 159 pairs:
    58778 0.877) 
    58779  
    58780 
    58781 > show #5 models
    58782 
    58783 > ui tool show Matchmaker
    58784 
    58785 The cached device pixel ratio value was stale on window expose. Please file a
    58786 QTBUG which explains how to reproduce. 
    58787 
    58788 > matchmaker #6 to #35
    58789 
    58790 Parameters 
    58791 --- 
    58792 Chain pairing | bb 
    58793 Alignment algorithm | Needleman-Wunsch 
    58794 Similarity matrix | BLOSUM-62 
    58795 SS fraction | 0.3 
    58796 Gap open (HH/SS/other) | 18/18/6 
    58797 Gap extend | 1 
    58798 SS matrix |  |  | H | S | O 
    58799 ---|---|---|--- 
    58800 H | 6 | -9 | -6 
    58801 S |  | 6 | -6 
    58802 O |  |  | 4 
    58803 Iteration cutoff | 2 
    58804  
    58805 Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#35)
    58806 with Arf1-P84077-human.pdb, chain A (#6), sequence alignment score = 714.3 
    58807 RMSD between 158 pruned atom pairs is 0.857 angstroms; (across all 159 pairs:
    58808 0.877) 
    58809  
    58810 
    58811 > hide #5 models
    58812 
    58813 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    58814 > dataset/Structure files/alphafold/Arf1-P84077-human.pdb"
    58815 
    58816 Arf1-P84077-human.pdb title: 
    58817 Alphafold monomer V2.0 prediction for adp-ribosylation factor 1 (P84077) [more
    58818 info...] 
    58819  
    58820 Chain information for Arf1-P84077-human.pdb #22 
    58821 --- 
    58822 Chain | Description | UniProt 
    58823 A | adp-ribosylation factor 1 | ARF1_HUMAN 1-181 
    58824  
    58825 
    58826 > color #22 #ff15a8ff
    58827 
    58828 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    58829 > dataset/Structure files/alphafold/Arf1-P84077-human.pdb"
    58830 
    58831 Arf1-P84077-human.pdb title: 
    58832 Alphafold monomer V2.0 prediction for adp-ribosylation factor 1 (P84077) [more
    58833 info...] 
    58834  
    58835 Chain information for Arf1-P84077-human.pdb #23 
    58836 --- 
    58837 Chain | Description | UniProt 
    58838 A | adp-ribosylation factor 1 | ARF1_HUMAN 1-181 
    58839  
    58840 
    58841 > color #23 #ff00b2ff
    58842 
    58843 > select add #22
    58844 
    58845 1457 atoms, 1483 bonds, 181 residues, 1 model selected 
    58846 
    58847 > select subtract #22
    58848 
    58849 Nothing selected 
    58850 
    58851 > ui tool show Matchmaker
    58852 
    58853 The cached device pixel ratio value was stale on window expose. Please file a
    58854 QTBUG which explains how to reproduce. 
    58855 
    58856 > matchmaker #22 to #36
    58857 
    58858 Parameters 
    58859 --- 
    58860 Chain pairing | bb 
    58861 Alignment algorithm | Needleman-Wunsch 
    58862 Similarity matrix | BLOSUM-62 
    58863 SS fraction | 0.3 
    58864 Gap open (HH/SS/other) | 18/18/6 
    58865 Gap extend | 1 
    58866 SS matrix |  |  | H | S | O 
    58867 ---|---|---|--- 
    58868 H | 6 | -9 | -6 
    58869 S |  | 6 | -6 
    58870 O |  |  | 4 
    58871 Iteration cutoff | 2 
    58872  
    58873 Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#36)
    58874 with Arf1-P84077-human.pdb, chain A (#22), sequence alignment score = 714.3 
    58875 RMSD between 158 pruned atom pairs is 0.857 angstroms; (across all 159 pairs:
    58876 0.877) 
    58877  
    58878 
    58879 > ui tool show Matchmaker
    58880 
    58881 The cached device pixel ratio value was stale on window expose. Please file a
    58882 QTBUG which explains how to reproduce. 
    58883 
    58884 > matchmaker #23 to #37
    58885 
    58886 Parameters 
    58887 --- 
    58888 Chain pairing | bb 
    58889 Alignment algorithm | Needleman-Wunsch 
    58890 Similarity matrix | BLOSUM-62 
    58891 SS fraction | 0.3 
    58892 Gap open (HH/SS/other) | 18/18/6 
    58893 Gap extend | 1 
    58894 SS matrix |  |  | H | S | O 
    58895 ---|---|---|--- 
    58896 H | 6 | -9 | -6 
    58897 S |  | 6 | -6 
    58898 O |  |  | 4 
    58899 Iteration cutoff | 2 
    58900  
    58901 Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#37)
    58902 with Arf1-P84077-human.pdb, chain A (#23), sequence alignment score = 714.3 
    58903 RMSD between 158 pruned atom pairs is 0.857 angstroms; (across all 159 pairs:
    58904 0.877) 
    58905  
    58906 
    58907 > hide #22 models
    58908 
    58909 > hide #23 models
    58910 
    58911 > hide #!26.1 models
    58912 
    58913 > hide #!35 models
    58914 
    58915 > hide #!36 models
    58916 
    58917 > hide #!37 models
    58918 
    58919 > show #!26.1 models
    58920 
    58921 > show #5 models
    58922 
    58923 > hide #!1 models
    58924 
    58925 > show #!1 models
    58926 
    58927 > ui tool show "Side View"
    58928 
    58929 > volume #1 level 0.004728
    58930 
    58931 > hide #!1 models
    58932 
    58933 > hide #5 models
    58934 
    58935 > show #5 models
    58936 
    58937 > hide #5 models
    58938 
    58939 > show #6 models
    58940 
    58941 > hide #6 models
    58942 
    58943 > show #5 models
    58944 
    58945 > show #!1 models
    58946 
    58947 > hide #5 models
    58948 
    58949 > hide #!26.1 models
    58950 
    58951 > show #6 models
    58952 
    58953 > show #!35 models
    58954 
    58955 > hide #!35 models
    58956 
    58957 > show #!36 models
    58958 
    58959 > hide #6 models
    58960 
    58961 > show #22 models
    58962 
    58963 > hide #22 models
    58964 
    58965 > show #23 models
    58966 
    58967 > hide #!36 models
    58968 
    58969 > show #!37 models
    58970 
    58971 > hide #!37 models
    58972 
    58973 > show #5 models
    58974 
    58975 > hide #23 models
    58976 
    58977 > fitmap #5 inMap #1
    58978 
    58979 Fit molecule Arf1-P84077-human.pdb (#5) to map
    58980 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    58981 average map value = 0.008207, steps = 56 
    58982 shifted from previous position = 1.94 
    58983 rotated from previous position = 3.57 degrees 
    58984 atoms outside contour = 426, contour level = 0.0047281 
    58985  
    58986 Position of Arf1-P84077-human.pdb (#5) relative to
    58987 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    58988 Matrix rotation and translation 
    58989 -0.18942851 0.67637478 -0.71178227 323.61574599 
    58990 0.98186050 0.12444879 -0.14304705 261.78874814 
    58991 -0.00817297 -0.72596809 -0.68767982 255.09048932 
    58992 Axis -0.60505182 -0.73032205 0.31708359 
    58993 Axis point -8.53082974 0.00000000 208.70218842 
    58994 Rotation angle (degrees) 151.20274669 
    58995 Shift along axis -306.10938398 
    58996  
    58997 
    58998 > hide #!25 models
    58999 
    59000 > hide #!26 models
    59001 
    59002 > hide #!27 models
    59003 
    59004 > hide #!32 models
    59005 
    59006 > hide #5 models
    59007 
    59008 > show #!30 models
    59009 
    59010 > show #!2 models
    59011 
    59012 > show #27.2 models
    59013 
    59014 > show #27.1 models
    59015 
    59016 > show #32.2 models
    59017 
    59018 > show #32.1 models
    59019 
    59020 > show #!4 models
    59021 
    59022 > show #!26.1 models
    59023 
    59024 > show #!35 models
    59025 
    59026 > show #!36 models
    59027 
    59028 > show #!37 models
    59029 
    59030 > show #!40 models
    59031 
    59032 > show #28 models
    59033 
    59034 > show #26.3 models
    59035 
    59036 > show #!29 models
    59037 
    59038 > show #!26.2 models
    59039 
    59040 > show #!24 models
    59041 
    59042 > show #!18 models
    59043 
    59044 > show #!19 models
    59045 
    59046 > show #!20 models
    59047 
    59048 > hide #!20 models
    59049 
    59050 > show #!20 models
    59051 
    59052 > hide #!20 models
    59053 
    59054 > show #!21 models
    59055 
    59056 > hide #!21 models
    59057 
    59058 > show #!13 models
    59059 
    59060 > show #!9 models
    59061 
    59062 > volume #1 level 0.004557
    59063 
    59064 > hide #!1 models
    59065 
    59066 > show #!1 models
    59067 
    59068 > hide #!4 models
    59069 
    59070 > show #!4 models
    59071 
    59072 > show #!16 models
    59073 
    59074 > hide #!4 models
    59075 
    59076 > hide #!16 models
    59077 
    59078 > show #!4 models
    59079 
    59080 > volume #1 level 0.004045
    59081 
    59082 > view orient
    59083 
    59084 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    59085 > dataset/Chimera sessions/20240710_leaf_fitting_xtal_alphafold_fitting.cxs"
    59086 
    59087 > hide #!1 models
    59088 
    59089 > show #25.1 models
    59090 
    59091 > hide #25.1 models
    59092 
    59093 > show #25.1 models
    59094 
    59095 > hide #25.1 models
    59096 
    59097 > show #25.1 models
    59098 
    59099 > hide #25.1 models
    59100 
    59101 > show #25.1 models
    59102 
    59103 > hide #25.1 models
    59104 
    59105 > show #25.1 models
    59106 
    59107 > hide #25.1 models
    59108 
    59109 > show #25.1 models
    59110 
    59111 > hide #25.1 models
    59112 
    59113 > show #!25.2 models
    59114 
    59115 > hide #!25.2 models
    59116 
    59117 > show #!25.2 models
    59118 
    59119 > hide #!25.2 models
    59120 
    59121 > show #25.3 models
    59122 
    59123 > hide #25.3 models
    59124 
    59125 > show #25.3 models
    59126 
    59127 > hide #25.3 models
    59128 
    59129 > show #!25.6 models
    59130 
    59131 > hide #!25.6 models
    59132 
    59133 > show #!25.6 models
    59134 
    59135 > hide #!25.6 models
    59136 
    59137 > show #!1 models
    59138 
    59139 > view orient
    59140 
    59141 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    59142 > dataset/Chimera sessions/20240710_leaf_fitting_xtal_alphafold_fitting.cxs"
    59143 
    59144 > hide #!2 models
    59145 
    59146 > hide #!4 models
    59147 
    59148 > hide #!9 models
    59149 
    59150 > show #!9 models
    59151 
    59152 > show #!3 models
    59153 
    59154 > show #!7 models
    59155 
    59156 > show #5 models
    59157 
    59158 > show #6 models
    59159 
    59160 > show #!15 models
    59161 
    59162 > show #!16 models
    59163 
    59164 > show #11 models
    59165 
    59166 > show #10 models
    59167 
    59168 > show #12 models
    59169 
    59170 > hide #!24 models
    59171 
    59172 > hide #!26.1 models
    59173 
    59174 > show #23 models
    59175 
    59176 > show #22 models
    59177 
    59178 > hide #!26.2 models
    59179 
    59180 > hide #26.3 models
    59181 
    59182 > hide #27.1 models
    59183 
    59184 > hide #27.2 models
    59185 
    59186 > hide #28 models
    59187 
    59188 > hide #!29 models
    59189 
    59190 > hide #!30 models
    59191 
    59192 > hide #32.1 models
    59193 
    59194 > hide #32.2 models
    59195 
    59196 > hide #!35 models
    59197 
    59198 > hide #!36 models
    59199 
    59200 > hide #!37 models
    59201 
    59202 > show #!14 models
    59203 
    59204 > show #!17 models
    59205 
    59206 > show #!20 models
    59207 
    59208 > show #!21 models
    59209 
    59210 > hide #!13 models
    59211 
    59212 > show #!13 models
    59213 
    59214 > hide #!21 models
    59215 
    59216 > show #!21 models
    59217 
    59218 > hide #!9 models
    59219 
    59220 > show #!9 models
    59221 
    59222 > color #5 #ff00b2ff
    59223 
    59224 > color #22 #ff3cb7ff
    59225 
    59226 > color #26.1 #ff00bcff
    59227 
    59228 > color #35 #ff00c6ff
    59229 
    59230 > color #36 #fe00cfff
    59231 
    59232 > color #37 #fd00d7ff
    59233 
    59234 > view orient
    59235 
    59236 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    59237 > dataset/Chimera sessions/20240710_leaf_fitting_alphafold_only_fitting.cxs"
    59238 
    59239 > hide #!1 models
    59240 
    59241 > show #25.1 models
    59242 
    59243 > hide #25.1 models
    59244 
    59245 > show #!25.2 models
    59246 
    59247 > hide #!25.2 models
    59248 
    59249 > show #25.3 models
    59250 
    59251 > hide #25.3 models
    59252 
    59253 > show #25.3 models
    59254 
    59255 > hide #25.3 models
    59256 
    59257 > show #!25.6 models
    59258 
    59259 > hide #!25.6 models
    59260 
    59261 > close #25
    59262 
    59263 > show #!1 models
    59264 
    59265 > view orient
    59266 
    59267 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    59268 > dataset/Chimera sessions/20240710_leaf_fitting_alphafold_only_fitting.cxs"
    59269 
    59270 ——— End of log from Wed Jul 10 16:07:37 2024 ———
    59271 
    59272 opened ChimeraX session 
    59273 
    59274 > show #8 models
    59275 
    59276 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    59277 > dataset/Chimera sessions/20240710_leaf_fitting_alphafold_only_fitting.cxs"
    59278 
    59279 ——— End of log from Wed Jul 10 16:36:09 2024 ———
    59280 
    59281 opened ChimeraX session 
    59282 
    59283 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    59284 > dataset/Structure files/alphafold 3 /GT 20240604
    59285 > /fold_2024_06_04_12_31/fold_2024_06_04_12_31_model_0.cif"
    59286 
    59287 Chain information for fold_2024_06_04_12_31_model_0.cif #25 
    59288 --- 
    59289 Chain | Description 
    59290 A | . 
    59291 B | . 
    59292 C | . 
    59293 D | . 
    59294 E | . 
    59295 F | . 
    59296 G H | . 
    59297  
    59298 
    59299 > select add #25
    59300 
    59301 39611 atoms, 40368 bonds, 5006 residues, 1 model selected 
    59302 
    59303 > hide sel atoms
    59304 
    59305 > show sel cartoons
    59306 
    59307 > ui mousemode right "translate selected models"
    59308 
    59309 > view matrix models #25,1,0,0,374.94,0,1,0,307.54,0,0,1,48.791
    59310 
    59311 > view matrix models #25,1,0,0,363.27,0,1,0,224.54,0,0,1,363.61
    59312 
    59313 > view matrix models #25,1,0,0,182.77,0,1,0,315.74,0,0,1,357.5
    59314 
    59315 > color #25/A blue
    59316 
    59317 > color #25/H deep pink
    59318 
    59319 > color #25/G deep pink
    59320 
    59321 > color #25/F yellow
    59322 
    59323 > color #25/B dark green
    59324 
    59325 > color #25/C cyan
    59326 
    59327 > color #25/D chocolate
    59328 
    59329 > color #25/E lime green
    59330 
    59331 > color #25/C cyan
    59332 
    59333 > select subtract #25
    59334 
    59335 Nothing selected 
    59336 
    59337 > select #25/A
    59338 
    59339 9742 atoms, 9961 bonds, 1224 residues, 1 model selected 
    59340 
    59341 > cartoon hide sel
    59342 
    59343 > select #25/B
    59344 
    59345 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    59346 
    59347 > cartoon hide sel
    59348 
    59349 > select #25/C
    59350 
    59351 7214 atoms, 7373 bonds, 905 residues, 1 model selected 
    59352 
    59353 > cartoon hide sel
    59354 
    59355 > select #25/H
    59356 
    59357 1445 atoms, 1472 bonds, 181 residues, 1 model selected 
    59358 
    59359 > cartoon hide sel
    59360 
    59361 > select #25/G
    59362 
    59363 1445 atoms, 1472 bonds, 181 residues, 1 model selected 
    59364 
    59365 > cartoon hide sel
    59366 
    59367 > select #25/F
    59368 
    59369 1420 atoms, 1441 bonds, 177 residues, 1 model selected 
    59370 
    59371 > cartoon hide sel
    59372 
    59373 > select #25/D
    59374 
    59375 4014 atoms, 4083 bonds, 511 residues, 1 model selected 
    59376 
    59377 > cartoon hide sel
    59378 
    59379 > select #25/E
    59380 
    59381 6830 atoms, 6947 bonds, 874 residues, 1 model selected 
    59382 
    59383 > cartoon hide sel
    59384 
    59385 > select #25/B
    59386 
    59387 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    59388 
    59389 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    59390 > dataset/Structure files/alphafold 3 /GT 20240604
    59391 > /fold_2024_06_04_12_31/20240710_leaf_fitting_alphafold_only_withAF3.cxs"
    59392 
    59393 > select add #25
    59394 
    59395 39611 atoms, 40368 bonds, 5006 residues, 1 model selected 
    59396 
    59397 > select subtract #25
    59398 
    59399 Nothing selected 
    59400 
    59401 The cached device pixel ratio value was stale on window expose. Please file a
    59402 QTBUG which explains how to reproduce. 
    59403 
    59404 > hide #25 models
    59405 
    59406 > show #25 models
    59407 
    59408 > hide #25 models
    59409 
    59410 > show #25 models
    59411 
    59412 > select #25/B
    59413 
    59414 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    59415 
    59416 > cartoon sel
    59417 
    59418 > ui tool show Matchmaker
    59419 
    59420 The cached device pixel ratio value was stale on window expose. Please file a
    59421 QTBUG which explains how to reproduce. 
    59422 
    59423 > matchmaker #25 to #4
    59424 
    59425 Parameters 
    59426 --- 
    59427 Chain pairing | bb 
    59428 Alignment algorithm | Needleman-Wunsch 
    59429 Similarity matrix | BLOSUM-62 
    59430 SS fraction | 0.3 
    59431 Gap open (HH/SS/other) | 18/18/6 
    59432 Gap extend | 1 
    59433 SS matrix |  |  | H | S | O 
    59434 ---|---|---|--- 
    59435 H | 6 | -9 | -6 
    59436 S |  | 6 | -6 
    59437 O |  |  | 4 
    59438 Iteration cutoff | 2 
    59439  
    59440 Matchmaker CopB_Q9JIF7_P395-L953.pdb, chain A (#4) with
    59441 fold_2024_06_04_12_31_model_0.cif, chain B (#25), sequence alignment score =
    59442 4122.5 
    59443 RMSD between 165 pruned atom pairs is 1.015 angstroms; (across all 520 pairs:
    59444 5.012) 
    59445  
    59446 
    59447 > select add #25
    59448 
    59449 39611 atoms, 40368 bonds, 5006 residues, 1 model selected 
    59450 
    59451 > select subtract #25
    59452 
    59453 Nothing selected 
    59454 
    59455 > select add #25
    59456 
    59457 39611 atoms, 40368 bonds, 5006 residues, 1 model selected 
    59458 
    59459 > select subtract #25
    59460 
    59461 Nothing selected 
    59462 
    59463 > hide #!3 models
    59464 
    59465 > hide #5 models
    59466 
    59467 > hide #6 models
    59468 
    59469 > hide #!7 models
    59470 
    59471 > hide #8 models
    59472 
    59473 > hide #!9 models
    59474 
    59475 > hide #10 models
    59476 
    59477 > show #!4 models
    59478 
    59479 > hide #11 models
    59480 
    59481 > hide #12 models
    59482 
    59483 > hide #!14 models
    59484 
    59485 > hide #!13 models
    59486 
    59487 > hide #!4 models
    59488 
    59489 > hide #!17 models
    59490 
    59491 > hide #!18 models
    59492 
    59493 > hide #!19 models
    59494 
    59495 > hide #!20 models
    59496 
    59497 > hide #!21 models
    59498 
    59499 > hide #23 models
    59500 
    59501 > hide #22 models
    59502 
    59503 > hide #!1 models
    59504 
    59505 > hide #!40 models
    59506 
    59507 > hide #!16 models
    59508 
    59509 > show #!16 models
    59510 
    59511 > hide #!16 models
    59512 
    59513 > hide #!15 models
    59514 
    59515 > show #!15 models
    59516 
    59517 > hide #!15 models
    59518 
    59519 > show #!15 models
    59520 
    59521 > hide #!15 models
    59522 
    59523 > show #!15 models
    59524 
    59525 > hide #!15 models
    59526 
    59527 > show #!15 models
    59528 
    59529 > hide #!15 models
    59530 
    59531 > hide #25 models
    59532 
    59533 > show #25 models
    59534 
    59535 > show #!1 models
    59536 
    59537 > show #!16 models
    59538 
    59539 > hide #!16 models
    59540 
    59541 > show #!16 models
    59542 
    59543 > hide #!16 models
    59544 
    59545 > show #!16 models
    59546 
    59547 > hide #!1 models
    59548 
    59549 > show #!1 models
    59550 
    59551 > hide #!16 models
    59552 
    59553 > show #!16 models
    59554 
    59555 > hide #!16 models
    59556 
    59557 > show #!16 models
    59558 
    59559 > hide #!16 models
    59560 
    59561 > show #!16 models
    59562 
    59563 > hide #!16 models
    59564 
    59565 > show #!16 models
    59566 
    59567 > hide #!16 models
    59568 
    59569 > volume #1 level 0.003845
    59570 
    59571 > ui tool show Matchmaker
    59572 
    59573 The cached device pixel ratio value was stale on window expose. Please file a
    59574 QTBUG which explains how to reproduce. 
    59575 
    59576 > matchmaker #25 to #15
    59577 
    59578 Parameters 
    59579 --- 
    59580 Chain pairing | bb 
    59581 Alignment algorithm | Needleman-Wunsch 
    59582 Similarity matrix | BLOSUM-62 
    59583 SS fraction | 0.3 
    59584 Gap open (HH/SS/other) | 18/18/6 
    59585 Gap extend | 1 
    59586 SS matrix |  |  | H | S | O 
    59587 ---|---|---|--- 
    59588 H | 6 | -9 | -6 
    59589 S |  | 6 | -6 
    59590 O |  |  | 4 
    59591 Iteration cutoff | 2 
    59592  
    59593 Matchmaker CopB_ Q9JIF7_G23-F394.pdb, chain A (#15) with
    59594 fold_2024_06_04_12_31_model_0.cif, chain B (#25), sequence alignment score =
    59595 3974.9 
    59596 RMSD between 223 pruned atom pairs is 0.851 angstroms; (across all 372 pairs:
    59597 3.614) 
    59598  
    59599 
    59600 > show #!15 models
    59601 
    59602 > hide #!15 models
    59603 
    59604 > show #!15 models
    59605 
    59606 > hide #25 models
    59607 
    59608 > show #25 models
    59609 
    59610 > hide #!1 models
    59611 
    59612 > show #!1 models
    59613 
    59614 > show #!16 models
    59615 
    59616 > hide #!16 models
    59617 
    59618 > show #!16 models
    59619 
    59620 > hide #!16 models
    59621 
    59622 > hide #!1 models
    59623 
    59624 > show #!1 models
    59625 
    59626 > hide #!1 models
    59627 
    59628 > show #!1 models
    59629 
    59630 > show #!2 models
    59631 
    59632 > hide #!2 models
    59633 
    59634 > show #!3 models
    59635 
    59636 > hide #!3 models
    59637 
    59638 > show #!4 models
    59639 
    59640 > hide #!4 models
    59641 
    59642 > show #!4 models
    59643 
    59644 > hide #!4 models
    59645 
    59646 > show #!16 models
    59647 
    59648 > hide #!16 models
    59649 
    59650 > show #!16 models
    59651 
    59652 > hide #!16 models
    59653 
    59654 > hide #!1 models
    59655 
    59656 > show #!16 models
    59657 
    59658 > show #!1 models
    59659 
    59660 > show #!13 models
    59661 
    59662 > hide #!13 models
    59663 
    59664 > show #!18 models
    59665 
    59666 > hide #!18 models
    59667 
    59668 > hide #!16 models
    59669 
    59670 > show #!16 models
    59671 
    59672 > hide #!1 models
    59673 
    59674 > hide #!16 models
    59675 
    59676 > show #!1 models
    59677 
    59678 > show #!13 models
    59679 
    59680 > hide #!13 models
    59681 
    59682 > show #!13 models
    59683 
    59684 > show #!7 models
    59685 
    59686 > hide #!1 models
    59687 
    59688 > hide #!7 models
    59689 
    59690 > hide #!13 models
    59691 
    59692 > show #!13 models
    59693 
    59694 > hide #!13 models
    59695 
    59696 > show #!1 models
    59697 
    59698 > hide #!1 models
    59699 
    59700 > show #!17 models
    59701 
    59702 > show #!14 models
    59703 
    59704 > show #!7 models
    59705 
    59706 > show #!3 models
    59707 
    59708 > show #5 models
    59709 
    59710 > show #6 models
    59711 
    59712 > show #8 models
    59713 
    59714 > show #!1 models
    59715 
    59716 > hide #!1 models
    59717 
    59718 > hide #8 models
    59719 
    59720 > show #8 models
    59721 
    59722 > show #11 models
    59723 
    59724 > show #10 models
    59725 
    59726 > show #!9 models
    59727 
    59728 > show #!18 models
    59729 
    59730 > show #!19 models
    59731 
    59732 > show #!13 models
    59733 
    59734 > show #!20 models
    59735 
    59736 > show #!21 models
    59737 
    59738 > show #22 models
    59739 
    59740 > show #23 models
    59741 
    59742 > hide #!21 models
    59743 
    59744 > hide #!20 models
    59745 
    59746 > hide #!19 models
    59747 
    59748 > hide #!18 models
    59749 
    59750 > hide #!17 models
    59751 
    59752 > hide #22 models
    59753 
    59754 > hide #23 models
    59755 
    59756 > hide #!14 models
    59757 
    59758 > hide #!13 models
    59759 
    59760 > hide #11 models
    59761 
    59762 > hide #10 models
    59763 
    59764 > hide #!9 models
    59765 
    59766 > hide #8 models
    59767 
    59768 > hide #!7 models
    59769 
    59770 > hide #6 models
    59771 
    59772 > hide #5 models
    59773 
    59774 > hide #!3 models
    59775 
    59776 > select #25/D
    59777 
    59778 4014 atoms, 4083 bonds, 511 residues, 1 model selected 
    59779 
    59780 > cartoon sel
    59781 
    59782 > select add #25
    59783 
    59784 39611 atoms, 40368 bonds, 5006 residues, 1 model selected 
    59785 
    59786 > select subtract #25
    59787 
    59788 Nothing selected 
    59789 
    59790 > show #8 models
    59791 
    59792 > hide #8 models
    59793 
    59794 > show #8 models
    59795 
    59796 > hide #8 models
    59797 
    59798 > show #8 models
    59799 
    59800 > hide #8 models
    59801 
    59802 > show #!1 models
    59803 
    59804 > volume #1 level 0.005446
    59805 
    59806 > volume #1 level 0.004645
    59807 
    59808 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    59809 > dataset/Structure files/alphafold 3 /GT 20240604
    59810 > /fold_2024_06_04_12_31/20240710_leaf_fitting_alphafold_only_withAF3_v2.cxs"
    59811 
    59812 ——— End of log from Wed Jul 10 17:31:38 2024 ———
    59813 
    59814 opened ChimeraX session 
    59815 
    59816 > split #25 chains
    59817 
    59818 Split fold_2024_06_04_12_31_model_0.cif (#25) into 8 models 
    59819 Chain information for fold_2024_06_04_12_31_model_0.cif A #25.1 
    59820 --- 
    59821 Chain | Description 
    59822 A | No description available 
    59823  
    59824 Chain information for fold_2024_06_04_12_31_model_0.cif B #25.2 
    59825 --- 
    59826 Chain | Description 
    59827 B | No description available 
    59828  
    59829 Chain information for fold_2024_06_04_12_31_model_0.cif C #25.3 
    59830 --- 
    59831 Chain | Description 
    59832 C | No description available 
    59833  
    59834 Chain information for fold_2024_06_04_12_31_model_0.cif D #25.4 
    59835 --- 
    59836 Chain | Description 
    59837 D | No description available 
    59838  
    59839 Chain information for fold_2024_06_04_12_31_model_0.cif E #25.5 
    59840 --- 
    59841 Chain | Description 
    59842 E | No description available 
    59843  
    59844 Chain information for fold_2024_06_04_12_31_model_0.cif F #25.6 
    59845 --- 
    59846 Chain | Description 
    59847 F | No description available 
    59848  
    59849 Chain information for fold_2024_06_04_12_31_model_0.cif G #25.7 
    59850 --- 
    59851 Chain | Description 
    59852 G | No description available 
    59853  
    59854 Chain information for fold_2024_06_04_12_31_model_0.cif H #25.8 
    59855 --- 
    59856 Chain | Description 
    59857 H | No description available 
    59858  
    59859 
    59860 > hide #!1 models
    59861 
    59862 > hide #!15 models
    59863 
    59864 > hide #25.1 models
    59865 
    59866 > show #25.1 models
    59867 
    59868 > hide #25.1 models
    59869 
    59870 > show #25.1 models
    59871 
    59872 > select add #25.1
    59873 
    59874 9742 atoms, 9961 bonds, 1224 residues, 1 model selected 
    59875 
    59876 > cartoon sel
    59877 
    59878 > select subtract #25.1
    59879 
    59880 Nothing selected 
    59881 
    59882 > select add #25.2
    59883 
    59884 7501 atoms, 7619 bonds, 953 residues, 1 model selected 
    59885 
    59886 > select subtract #25.2
    59887 
    59888 Nothing selected 
    59889 
    59890 > select add #25.3
    59891 
    59892 7214 atoms, 7373 bonds, 905 residues, 1 model selected 
    59893 
    59894 > cartoon sel
    59895 
    59896 > select subtract #25.3
    59897 
    59898 Nothing selected 
    59899 
    59900 > select add #25.4
    59901 
    59902 4014 atoms, 4083 bonds, 511 residues, 1 model selected 
    59903 
    59904 > select subtract #25.4
    59905 
    59906 Nothing selected 
    59907 
    59908 > select add #25.5
    59909 
    59910 6830 atoms, 6947 bonds, 874 residues, 1 model selected 
    59911 
    59912 > cartoon sel
    59913 
    59914 > select subtract #25.5
    59915 
    59916 Nothing selected 
    59917 
    59918 > select add #25.6
    59919 
    59920 1420 atoms, 1441 bonds, 177 residues, 1 model selected 
    59921 
    59922 > cartoon sel
    59923 
    59924 > select subtract #25.6
    59925 
    59926 Nothing selected 
    59927 
    59928 > select add #25.7
    59929 
    59930 1445 atoms, 1472 bonds, 181 residues, 1 model selected 
    59931 
    59932 > cartoon sel
    59933 
    59934 > select subtract #25.7
    59935 
    59936 Nothing selected 
    59937 
    59938 > select add #25.8
    59939 
    59940 1445 atoms, 1472 bonds, 181 residues, 1 model selected 
    59941 
    59942 > cartoon sel
    59943 
    59944 > select subtract #25.8
    59945 
    59946 Nothing selected 
    59947 
    59948 > hide #25.8 models
    59949 
    59950 > show #25.8 models
    59951 
    59952 > select add #26
    59953 
    59954 4503 atoms, 4577 bonds, 5 pseudobonds, 565 residues, 6 models selected 
    59955 
    59956 > cartoon #25#!26-27,32
    59957 
    59958 > select subtract #26
    59959 
    59960 Nothing selected 
    59961 
    59962 > hide #!26 models
    59963 
    59964 > show #!26 models
    59965 
    59966 > show #!26.1 models
    59967 
    59968 > hide #!26.1 models
    59969 
    59970 > show #!1 models
    59971 
    59972 The cached device pixel ratio value was stale on window expose. Please file a
    59973 QTBUG which explains how to reproduce. 
    59974 
    59975 > rename #25 2024_06_04_12_31_AF3_model_0.cif
    59976 
    59977 > rename #25.1 "2024_06_04_12_31_model_0_CopA.cif A"
    59978 
    59979 > rename #25.2 "2024_06_04_12_31_model_0_CopB.cif B"
    59980 
    59981 > rename #25.3 "2024_06_04_12_31_model_0_CopBprime.cif C"
    59982 
    59983 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    59984 > dataset/Structure files/alphafold 3 /GT 20240604
    59985 > /fold_2024_06_04_12_31/20240710_leaf_fitting_alphafold_only_withAF3_v3.cxs"
    59986 
    59987 > show #!16 models
    59988 
    59989 > hide #!16 models
    59990 
    59991 > ui tool show "Fit in Map"
    59992 
    59993 The cached device pixel ratio value was stale on window expose. Please file a
    59994 QTBUG which explains how to reproduce. 
    59995 
    59996 > fitmap #25.2 inMap #1
    59997 
    59998 Fit molecule 2024_06_04_12_31_model_0_CopB.cif B (#25.2) to map
    59999 relion_locres_filtered_20240326_GT.mrc (#1) using 7501 atoms 
    60000 average map value = 0.008543, steps = 92 
    60001 shifted from previous position = 4.83 
    60002 rotated from previous position = 8.42 degrees 
    60003 atoms outside contour = 3060, contour level = 0.0046452 
    60004  
    60005 Position of 2024_06_04_12_31_model_0_CopB.cif B (#25.2) relative to
    60006 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    60007 Matrix rotation and translation 
    60008 0.81836991 -0.03043632 0.57388528 219.84667924 
    60009 0.54622648 0.35157960 -0.76028180 252.72686731 
    60010 -0.17862618 0.93566309 0.30434729 262.25133331 
    60011 Axis 0.87287250 0.38730419 0.29679803 
    60012 Axis point 0.00000000 -34.12525913 174.24483479 
    60013 Rotation angle (degrees) 76.28170258 
    60014 Shift along axis 367.61597236 
    60015  
    60016 
    60017 > show #!16 models
    60018 
    60019 > hide #!1 models
    60020 
    60021 > hide #!16 models
    60022 
    60023 > show #!1 models
    60024 
    60025 > fitmap #25.3 inMap #1
    60026 
    60027 Fit molecule 2024_06_04_12_31_model_0_CopBprime.cif C (#25.3) to map
    60028 relion_locres_filtered_20240326_GT.mrc (#1) using 7214 atoms 
    60029 average map value = 0.008369, steps = 160 
    60030 shifted from previous position = 6.47 
    60031 rotated from previous position = 12.7 degrees 
    60032 atoms outside contour = 2796, contour level = 0.0046452 
    60033  
    60034 Position of 2024_06_04_12_31_model_0_CopBprime.cif C (#25.3) relative to
    60035 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    60036 Matrix rotation and translation 
    60037 0.84345587 0.00482068 0.53717683 223.29518155 
    60038 0.47339236 0.46600929 -0.74748579 248.12832786 
    60039 -0.25393278 0.88476670 0.39077620 257.93229712 
    60040 Axis 0.87127387 0.42228340 0.25011710 
    60041 Axis point 0.00000000 -68.12363713 175.06688149 
    60042 Rotation angle (degrees) 69.50530340 
    60043 Shift along axis 363.84501176 
    60044  
    60045 
    60046 > fitmap #25.4 inMap #1
    60047 
    60048 Fit molecule fold_2024_06_04_12_31_model_0.cif D (#25.4) to map
    60049 relion_locres_filtered_20240326_GT.mrc (#1) using 4014 atoms 
    60050 average map value = 0.004982, steps = 256 
    60051 shifted from previous position = 4.02 
    60052 rotated from previous position = 10.1 degrees 
    60053 atoms outside contour = 2765, contour level = 0.0046452 
    60054  
    60055 Position of fold_2024_06_04_12_31_model_0.cif D (#25.4) relative to
    60056 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    60057 Matrix rotation and translation 
    60058 0.80534835 0.02456211 0.59229278 219.83833435 
    60059 0.54486002 0.36295360 -0.75590492 251.11971251 
    60060 -0.23354142 0.93148343 0.27892117 259.71968287 
    60061 Axis 0.86561293 0.42364448 0.26690750 
    60062 Axis point 0.00000000 -45.73336002 165.62858715 
    60063 Rotation angle (degrees) 77.07875382 
    60064 Shift along axis 366.00151472 
    60065  
    60066 
    60067 > hide #25.8 models
    60068 
    60069 > show #25.8 models
    60070 
    60071 > hide #25.7 models
    60072 
    60073 > show #25.7 models
    60074 
    60075 > hide #25.7 models
    60076 
    60077 > show #25.7 models
    60078 
    60079 > fitmap #25.7 inMap #1
    60080 
    60081 Fit molecule fold_2024_06_04_12_31_model_0.cif G (#25.7) to map
    60082 relion_locres_filtered_20240326_GT.mrc (#1) using 1445 atoms 
    60083 average map value = 0.007837, steps = 72 
    60084 shifted from previous position = 6.15 
    60085 rotated from previous position = 14.8 degrees 
    60086 atoms outside contour = 505, contour level = 0.0046452 
    60087  
    60088 Position of fold_2024_06_04_12_31_model_0.cif G (#25.7) relative to
    60089 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    60090 Matrix rotation and translation 
    60091 0.83207671 0.08557782 0.54801896 221.29669356 
    60092 0.47205720 0.40949785 -0.78068784 251.64545733 
    60093 -0.29122215 0.90828847 0.30033600 256.11679191 
    60094 Axis 0.87730649 0.43592777 0.20074934 
    60095 Axis point 0.00000000 -68.21876802 175.56477609 
    60096 Rotation angle (degrees) 74.27888041 
    60097 Shift along axis 355.25954487 
    60098  
    60099 
    60100 > hide #25.3 models
    60101 
    60102 > show #!3 models
    60103 
    60104 > show #!7 models
    60105 
    60106 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    60107 > dataset/Structure files/alphafold 3 /GT 20240604
    60108 > /fold_2024_06_04_12_31/20240710_leaf_fitting_alphafold_only_withAF3_v4.cxs"
    60109 
    60110 ——— End of log from Wed Jul 10 18:08:13 2024 ———
    60111 
    60112 opened ChimeraX session 
    60113 
    60114 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    60115 > dataset/Structure files/alphafold 3 /GT 20240604 /fold_2024_06_04_12_31
    60116 > (1)/fold_2024_06_04_12_31_summary_confidences_0.json"
    60117 
    60118 Failed opening file /Users/becca/Desktop/Postdoc/COPI notebooks and
    60119 resources/COPI-Golph3 dataset/Structure files/alphafold 3 /GT 20240604
    60120 /fold_2024_06_04_12_31 (1)/fold_2024_06_04_12_31_summary_confidences_0.json: 
    60121 expected str, bytes or os.PathLike object, not NoneType 
    60122 
    60123 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    60124 > dataset/Structure files/alphafold 3 /GT 20240604 /fold_2024_06_04_12_31
    60125 > (1)/fold_2024_06_04_12_31_summary_confidences_0.json"
    60126 
    60127 Failed opening file /Users/becca/Desktop/Postdoc/COPI notebooks and
    60128 resources/COPI-Golph3 dataset/Structure files/alphafold 3 /GT 20240604
    60129 /fold_2024_06_04_12_31 (1)/fold_2024_06_04_12_31_summary_confidences_0.json: 
    60130 expected str, bytes or os.PathLike object, not NoneType 
    60131 
    60132 > ui tool show "Fit in Map"
    60133 
    60134 The cached device pixel ratio value was stale on window expose. Please file a
    60135 QTBUG which explains how to reproduce. 
    60136 
    60137 > fitmap #25.1 inMap #1
    60138 
    60139 Fit molecule 2024_06_04_12_31_model_0_CopA.cif A (#25.1) to map
    60140 relion_locres_filtered_20240326_GT.mrc (#1) using 9742 atoms 
    60141 average map value = 0.005669, steps = 116 
    60142 shifted from previous position = 9.72 
    60143 rotated from previous position = 11.3 degrees 
    60144 atoms outside contour = 5635, contour level = 0.0046452 
    60145  
    60146 Position of 2024_06_04_12_31_model_0_CopA.cif A (#25.1) relative to
    60147 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    60148 Matrix rotation and translation 
    60149 0.75553140 0.04537000 0.65353950 219.16243552 
    60150 0.61538755 0.29295285 -0.73176279 259.39055669 
    60151 -0.22465634 0.95504984 0.19341494 257.39821799 
    60152 Axis 0.84964385 0.44234533 0.28711660 
    60153 Axis point -0.00000000 -26.88413277 153.85341339 
    60154 Rotation angle (degrees) 83.05309036 
    60155 Shift along axis 374.85351736 
    60156  
    60157 
    60158 > show #25.3 models
    60159 
    60160 > fitmap #25.3 inMap #1
    60161 
    60162 Fit molecule 2024_06_04_12_31_model_0_CopBprime.cif C (#25.3) to map
    60163 relion_locres_filtered_20240326_GT.mrc (#1) using 7214 atoms 
    60164 average map value = 0.008368, steps = 48 
    60165 shifted from previous position = 0.0306 
    60166 rotated from previous position = 0.0358 degrees 
    60167 atoms outside contour = 2792, contour level = 0.0046452 
    60168  
    60169 Position of 2024_06_04_12_31_model_0_CopBprime.cif C (#25.3) relative to
    60170 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    60171 Matrix rotation and translation 
    60172 0.84321152 0.00513755 0.53755738 223.25372064 
    60173 0.47367936 0.46575275 -0.74746387 248.14694008 
    60174 -0.25420896 0.88489998 0.39029453 257.93051862 
    60175 Axis 0.87116267 0.42255119 0.25005218 
    60176 Axis point 0.00000000 -68.10469645 174.97857555 
    60177 Rotation angle (degrees) 69.53535083 
    60178 Shift along axis 363.84118025 
    60179  
    60180 
    60181 > fitmap #25.5 inMap #1
    60182 
    60183 Fit molecule fold_2024_06_04_12_31_model_0.cif E (#25.5) to map
    60184 relion_locres_filtered_20240326_GT.mrc (#1) using 6830 atoms 
    60185 average map value = 0.00533, steps = 144 
    60186 shifted from previous position = 18.8 
    60187 rotated from previous position = 32.2 degrees 
    60188 atoms outside contour = 3946, contour level = 0.0046452 
    60189  
    60190 Position of fold_2024_06_04_12_31_model_0.cif E (#25.5) relative to
    60191 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    60192 Matrix rotation and translation 
    60193 0.92680175 -0.00991127 0.37542014 203.02780080 
    60194 0.37483013 -0.03749334 -0.92633505 259.56425147 
    60195 0.02325691 0.99924773 -0.03103385 251.03464453 
    60196 Axis 0.96521787 0.17652538 0.19285553 
    60197 Axis point 0.00000000 17.09180671 205.76151029 
    60198 Rotation angle (degrees) 94.06354038 
    60199 Shift along axis 290.19915859 
    60200  
    60201 
    60202 > fitmap #25.6 inMap #1
    60203 
    60204 Fit molecule fold_2024_06_04_12_31_model_0.cif F (#25.6) to map
    60205 relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms 
    60206 average map value = 0.006566, steps = 156 
    60207 shifted from previous position = 14.5 
    60208 rotated from previous position = 50.9 degrees 
    60209 atoms outside contour = 670, contour level = 0.0046452 
    60210  
    60211 Position of fold_2024_06_04_12_31_model_0.cif F (#25.6) relative to
    60212 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    60213 Matrix rotation and translation 
    60214 0.91730136 0.38762874 0.09111629 227.23819734 
    60215 -0.16863333 0.58545743 -0.79297062 293.42586081 
    60216 -0.36072292 0.71202778 0.60240802 274.50516754 
    60217 Axis 0.90286439 0.27106310 -0.33370748 
    60218 Axis point 0.00000000 -237.05848562 427.95408374 
    60219 Rotation angle (degrees) 56.45557375 
    60220 Shift along axis 193.09777338 
    60221  
    60222 
    60223 > volume #1 level 0.007361
    60224 
    60225 > select add #25.8
    60226 
    60227 1445 atoms, 1472 bonds, 181 residues, 1 model selected 
    60228 
    60229 > ui mousemode right "translate selected models"
    60230 
    60231 > view matrix models
    60232 > #25.8,0.74055,-0.13166,0.65898,273.87,0.65555,0.35719,-0.66533,308.82,-0.14779,0.92471,0.35082,357.56
    60233 
    60234 > view matrix models
    60235 > #25.8,0.74055,-0.13166,0.65898,290.35,0.65555,0.35719,-0.66533,310.7,-0.14779,0.92471,0.35082,354.71
    60236 
    60237 > fitmap #25.6 inMap #1
    60238 
    60239 Fit molecule fold_2024_06_04_12_31_model_0.cif F (#25.6) to map
    60240 relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms 
    60241 average map value = 0.006567, steps = 28 
    60242 shifted from previous position = 0.0442 
    60243 rotated from previous position = 0.0449 degrees 
    60244 atoms outside contour = 875, contour level = 0.0073613 
    60245  
    60246 Position of fold_2024_06_04_12_31_model_0.cif F (#25.6) relative to
    60247 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    60248 Matrix rotation and translation 
    60249 0.91700642 0.38823271 0.09151274 227.23927269 
    60250 -0.16874008 0.58547245 -0.79293682 293.39526347 
    60251 -0.36142220 0.71168629 0.60239241 274.54257906 
    60252 Axis 0.90253319 0.27168852 -0.33409458 
    60253 Axis point 0.00000000 -237.32869351 427.92431869 
    60254 Rotation angle (degrees) 56.46573103 
    60255 Shift along axis 193.07992175 
    60256  
    60257 
    60258 > fitmap #25.8 inMap #1
    60259 
    60260 Fit molecule fold_2024_06_04_12_31_model_0.cif H (#25.8) to map
    60261 relion_locres_filtered_20240326_GT.mrc (#1) using 1445 atoms 
    60262 average map value = 0.008109, steps = 468 
    60263 shifted from previous position = 13.3 
    60264 rotated from previous position = 60.9 degrees 
    60265 atoms outside contour = 833, contour level = 0.0073613 
    60266  
    60267 Position of fold_2024_06_04_12_31_model_0.cif H (#25.8) relative to
    60268 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    60269 Matrix rotation and translation 
    60270 0.12575643 -0.88575141 0.44679946 228.82969252 
    60271 0.99073145 0.08881934 -0.10277317 179.18096389 
    60272 0.05134705 0.45558267 0.88871138 240.16932217 
    60273 Axis 0.27955096 0.19799041 0.93949511 
    60274 Axis point 14.33554481 141.59673741 0.00000000 
    60275 Rotation angle (degrees) 87.03972432 
    60276 Shift along axis 325.08357550 
    60277  
    60278 
    60279 > view matrix models
    60280 > #25.8,0.11366,-0.88418,0.45312,290.07,0.99167,0.073124,-0.10606,260.62,0.060642,0.4614,0.88512,318.11
    60281 
    60282 > view matrix models
    60283 > #25.8,0.11366,-0.88418,0.45312,294.87,0.99167,0.073124,-0.10606,262.05,0.060642,0.4614,0.88512,317.92
    60284 
    60285 > ui mousemode right "rotate selected models"
    60286 
    60287 > view matrix models
    60288 > #25.8,-0.66494,-0.24529,-0.70547,392.21,-0.019471,-0.93852,0.34468,260.9,-0.74664,0.24292,0.61928,357.82
    60289 
    60290 > ui mousemode right "translate selected models"
    60291 
    60292 > view matrix models
    60293 > #25.8,-0.66494,-0.24529,-0.70547,406.09,-0.019471,-0.93852,0.34468,256.15,-0.74664,0.24292,0.61928,359.03
    60294 
    60295 > fitmap #25.8 inMap #1
    60296 
    60297 Fit molecule fold_2024_06_04_12_31_model_0.cif H (#25.8) to map
    60298 relion_locres_filtered_20240326_GT.mrc (#1) using 1445 atoms 
    60299 average map value = 0.01011, steps = 148 
    60300 shifted from previous position = 4.47 
    60301 rotated from previous position = 45.9 degrees 
    60302 atoms outside contour = 599, contour level = 0.0073613 
    60303  
    60304 Position of fold_2024_06_04_12_31_model_0.cif H (#25.8) relative to
    60305 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    60306 Matrix rotation and translation 
    60307 -0.98716163 -0.15525535 -0.03751933 340.31636141 
    60308 0.09860749 -0.77717312 0.62151308 169.78952644 
    60309 -0.12565225 0.60983417 0.78250483 262.93874124 
    60310 Axis -0.04341926 0.32765622 0.94379880 
    60311 Axis point 173.51910029 51.88093325 0.00000000 
    60312 Rotation angle (degrees) 172.27087505 
    60313 Shift along axis 289.01757907 
    60314  
    60315 
    60316 > select subtract #25.8
    60317 
    60318 Nothing selected 
    60319 
    60320 > fitmap #25.7 inMap #1
    60321 
    60322 Fit molecule fold_2024_06_04_12_31_model_0.cif G (#25.7) to map
    60323 relion_locres_filtered_20240326_GT.mrc (#1) using 1445 atoms 
    60324 average map value = 0.007837, steps = 60 
    60325 shifted from previous position = 0.0106 
    60326 rotated from previous position = 0.0255 degrees 
    60327 atoms outside contour = 805, contour level = 0.0073613 
    60328  
    60329 Position of fold_2024_06_04_12_31_model_0.cif G (#25.7) relative to
    60330 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    60331 Matrix rotation and translation 
    60332 0.83215962 0.08563418 0.54788425 221.30652905 
    60333 0.47179779 0.40985808 -0.78065563 251.64999561 
    60334 -0.29140559 0.90812067 0.30066533 256.11008960 
    60335 Axis 0.87730176 0.43600237 0.20060799 
    60336 Axis point 0.00000000 -68.32153315 175.59524077 
    60337 Rotation angle (degrees) 74.25588981 
    60338 Shift along axis 355.25032939 
    60339  
    60340 
    60341 > fitmap #25.7 inMap #1
    60342 
    60343 Fit molecule fold_2024_06_04_12_31_model_0.cif G (#25.7) to map
    60344 relion_locres_filtered_20240326_GT.mrc (#1) using 1445 atoms 
    60345 average map value = 0.007837, steps = 48 
    60346 shifted from previous position = 0.026 
    60347 rotated from previous position = 0.0382 degrees 
    60348 atoms outside contour = 804, contour level = 0.0073613 
    60349  
    60350 Position of fold_2024_06_04_12_31_model_0.cif G (#25.7) relative to
    60351 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    60352 Matrix rotation and translation 
    60353 0.83221936 0.08509556 0.54787744 221.30074730 
    60354 0.47184021 0.41022785 -0.78043573 251.66017447 
    60355 -0.29116620 0.90800433 0.30124805 256.12289313 
    60356 Axis 0.87725727 0.43593915 0.20093965 
    60357 Axis point 0.00000000 -68.30458057 175.60720654 
    60358 Rotation angle (degrees) 74.22575907 
    60359 Shift along axis 355.31145663 
    60360  
    60361 
    60362 > select add #25.5
    60363 
    60364 6830 atoms, 6947 bonds, 874 residues, 1 model selected 
    60365 
    60366 > select add #25
    60367 
    60368 39611 atoms, 40368 bonds, 5006 residues, 9 models selected 
    60369 
    60370 > select subtract #25
    60371 
    60372 Nothing selected 
    60373 
    60374 > ui tool show Matchmaker
    60375 
    60376 The cached device pixel ratio value was stale on window expose. Please file a
    60377 QTBUG which explains how to reproduce. 
    60378 
    60379 > matchmaker #25.5 to #9
    60380 
    60381 Parameters 
    60382 --- 
    60383 Chain pairing | bb 
    60384 Alignment algorithm | Needleman-Wunsch 
    60385 Similarity matrix | BLOSUM-62 
    60386 SS fraction | 0.3 
    60387 Gap open (HH/SS/other) | 18/18/6 
    60388 Gap extend | 1 
    60389 SS matrix |  |  | H | S | O 
    60390 ---|---|---|--- 
    60391 H | 6 | -9 | -6 
    60392 S |  | 6 | -6 
    60393 O |  |  | 4 
    60394 Iteration cutoff | 2 
    60395  
    60396 Matchmaker CopG_Q9QZE5_L311-T583, chain A (#9) with
    60397 fold_2024_06_04_12_31_model_0.cif E, chain E (#25.5), sequence alignment score
    60398 = 3514.8 
    60399 RMSD between 175 pruned atom pairs is 0.803 angstroms; (across all 277 pairs:
    60400 3.261) 
    60401  
    60402 
    60403 > ui tool show Matchmaker
    60404 
    60405 The cached device pixel ratio value was stale on window expose. Please file a
    60406 QTBUG which explains how to reproduce. 
    60407 
    60408 > matchmaker #25.6 to #10
    60409 
    60410 Parameters 
    60411 --- 
    60412 Chain pairing | bb 
    60413 Alignment algorithm | Needleman-Wunsch 
    60414 Similarity matrix | BLOSUM-62 
    60415 SS fraction | 0.3 
    60416 Gap open (HH/SS/other) | 18/18/6 
    60417 Gap extend | 1 
    60418 SS matrix |  |  | H | S | O 
    60419 ---|---|---|--- 
    60420 H | 6 | -9 | -6 
    60421 S |  | 6 | -6 
    60422 O |  |  | 4 
    60423 Iteration cutoff | 2 
    60424  
    60425 Matchmaker CopZ1_P61924_M1-V153.pdb, chain A (#10) with
    60426 fold_2024_06_04_12_31_model_0.cif F, chain F (#25.6), sequence alignment score
    60427 = 834 
    60428 RMSD between 140 pruned atom pairs is 0.442 angstroms; (across all 153 pairs:
    60429 2.101) 
    60430  
    60431 
    60432 > hide #25.8 models
    60433 
    60434 > hide #25.7 models
    60435 
    60436 > hide #25.6 models
    60437 
    60438 > hide #25.5 models
    60439 
    60440 > hide #25.4 models
    60441 
    60442 > hide #25.3 models
    60443 
    60444 > hide #25.2 models
    60445 
    60446 > hide #!7 models
    60447 
    60448 > hide #!3 models
    60449 
    60450 > hide #!1 models
    60451 
    60452 > hide #25.1 models
    60453 
    60454 > show #25.1 models
    60455 
    60456 > combine #25.1
    60457 
    60458 > hide #33 models
    60459 
    60460 > show #!1 models
    60461 
    60462 > hide #!1 models
    60463 
    60464 > ui mousemode right select
    60465 
    60466 Drag select of 373 residues 
    60467 
    60468 > select up
    60469 
    60470 3070 atoms, 3133 bonds, 393 residues, 1 model selected 
    60471 
    60472 > delete sel
    60473 
    60474 Drag select of 16 residues, 2 pseudobonds 
    60475 
    60476 > select up
    60477 
    60478 416 atoms, 427 bonds, 2 pseudobonds, 54 residues, 2 models selected 
    60479 
    60480 > delete sel
    60481 
    60482 > show #!1 models
    60483 
    60484 > fitmap #25.1 inMap #1
    60485 
    60486 Fit molecule 2024_06_04_12_31_model_0_CopA.cif A (#25.1) to map
    60487 relion_locres_filtered_20240326_GT.mrc (#1) using 6256 atoms 
    60488 average map value = 0.008111, steps = 48 
    60489 shifted from previous position = 0.31 
    60490 rotated from previous position = 0.572 degrees 
    60491 atoms outside contour = 3215, contour level = 0.0073613 
    60492  
    60493 Position of 2024_06_04_12_31_model_0_CopA.cif A (#25.1) relative to
    60494 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    60495 Matrix rotation and translation 
    60496 0.76006059 0.04278394 0.64844231 218.74194091 
    60497 0.60950045 0.29920371 -0.73415689 259.35375027 
    60498 -0.22542647 0.95322960 0.20133612 257.86149366 
    60499 Axis 0.85094793 0.44069147 0.28579477 
    60500 Axis point -0.00000000 -28.07039157 155.48469352 
    60501 Rotation angle (degrees) 82.51305906 
    60502 Shift along axis 374.12845394 
    60503  
    60504 
    60505 > fitmap #25.1 inMap #1
    60506 
    60507 Fit molecule 2024_06_04_12_31_model_0_CopA.cif A (#25.1) to map
    60508 relion_locres_filtered_20240326_GT.mrc (#1) using 6256 atoms 
    60509 average map value = 0.008111, steps = 44 
    60510 shifted from previous position = 0.0292 
    60511 rotated from previous position = 0.00608 degrees 
    60512 atoms outside contour = 3212, contour level = 0.0073613 
    60513  
    60514 Position of 2024_06_04_12_31_model_0_CopA.cif A (#25.1) relative to
    60515 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    60516 Matrix rotation and translation 
    60517 0.76009501 0.04286795 0.64839642 218.76025174 
    60518 0.60943303 0.29922890 -0.73420259 259.36442844 
    60519 -0.22549271 0.95321792 0.20131725 257.87889146 
    60520 Axis 0.85096738 0.44070292 0.28571918 
    60521 Axis point 0.00000000 -28.09786587 155.50118606 
    60522 Rotation angle (degrees) 82.51188250 
    60523 Shift along axis 374.14144497 
    60524  
    60525 
    60526 > hide #!1 models
    60527 
    60528 > show #!1 models
    60529 
    60530 > hide #!1 models
    60531 
    60532 > close #33
    60533 
    60534 > select clear
    60535 
    60536 Drag select of 153 residues 
    60537 
    60538 > select up
    60539 
    60540 1269 atoms, 1286 bonds, 160 residues, 1 model selected 
    60541 
    60542 > select down
    60543 
    60544 1219 atoms, 153 residues, 1 model selected 
    60545 
    60546 > select up
    60547 
    60548 1269 atoms, 1286 bonds, 160 residues, 1 model selected 
    60549 
    60550 > select clear
    60551 
    60552 Drag select of 164 residues 
    60553 
    60554 > select down
    60555 
    60556 1309 atoms, 164 residues, 1 model selected 
    60557 
    60558 > select clear
    60559 
    60560 Drag select of 57 residues 
    60561 Drag select of 120 residues 
    60562 
    60563 > select up
    60564 
    60565 1073 atoms, 1086 bonds, 133 residues, 1 model selected 
    60566 Drag select of 161 residues 
    60567 Drag select of 157 residues 
    60568 [Repeated 1 time(s)]
    60569 
    60570 > combine sel
    60571 
    60572 > hide #!33 models
    60573 
    60574 > delete sel
    60575 
    60576 > fitmap #25.1 inMap #1
    60577 
    60578 Fit molecule 2024_06_04_12_31_model_0_CopA.cif A (#25.1) to map
    60579 relion_locres_filtered_20240326_GT.mrc (#1) using 5009 atoms 
    60580 average map value = 0.008583, steps = 68 
    60581 shifted from previous position = 0.841 
    60582 rotated from previous position = 2.63 degrees 
    60583 atoms outside contour = 2386, contour level = 0.0073613 
    60584  
    60585 Position of 2024_06_04_12_31_model_0_CopA.cif A (#25.1) relative to
    60586 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    60587 Matrix rotation and translation 
    60588 0.72960486 0.04624134 0.68230381 220.93350354 
    60589 0.64220662 0.29658780 -0.70682836 260.25489256 
    60590 -0.23504768 0.95388543 0.18669540 256.90234719 
    60591 Axis 0.83510136 0.46129651 0.29968524 
    60592 Axis point 0.00000000 -25.87166094 144.93945606 
    60593 Rotation angle (degrees) 83.88963054 
    60594 Shift along axis 381.54638528 
    60595  
    60596 
    60597 > show #!1 models
    60598 
    60599 > show #!33 models
    60600 
    60601 > hide #!1 models
    60602 
    60603 > hide #!25.1 models
    60604 
    60605 > show #!25.1 models
    60606 
    60607 > hide #!25.1 models
    60608 
    60609 Drag select of 605 residues 
    60610 
    60611 > delete sel
    60612 
    60613 Drag select of 11 residues, 1 pseudobonds 
    60614 Drag select of 12 residues 
    60615 
    60616 > select up
    60617 
    60618 139 atoms, 140 bonds, 17 residues, 1 model selected 
    60619 
    60620 > select clear
    60621 
    60622 Drag select of 14 residues, 1 pseudobonds 
    60623 
    60624 > delete sel
    60625 
    60626 > select clear
    60627 
    60628 [Repeated 1 time(s)]
    60629 
    60630 > fitmap #33 inMap #1
    60631 
    60632 Fit molecule copy of 2024_06_04_12_31_model_0_CopA.cif A (#33) to map
    60633 relion_locres_filtered_20240326_GT.mrc (#1) using 1255 atoms 
    60634 average map value = 0.01015, steps = 68 
    60635 shifted from previous position = 6.46 
    60636 rotated from previous position = 7.67 degrees 
    60637 atoms outside contour = 557, contour level = 0.0073613 
    60638  
    60639 Position of copy of 2024_06_04_12_31_model_0_CopA.cif A (#33) relative to
    60640 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    60641 Matrix rotation and translation 
    60642 0.83497221 0.02462714 0.54974076 216.64059216 
    60643 0.51007972 0.34023297 -0.78997481 253.86750709 
    60644 -0.20649476 0.94001863 0.27152327 263.80669951 
    60645 Axis 0.88741727 0.38791850 0.24901771 
    60646 Axis point 0.00000000 -44.20380174 183.25726602 
    60647 Rotation angle (degrees) 77.09329231 
    60648 Shift along axis 356.42304552 
    60649  
    60650 
    60651 > show #!1 models
    60652 
    60653 > show #!25.1 models
    60654 
    60655 > hide #!1 models
    60656 
    60657 > rename #25.1 "2024_06_04_12_31_model_0_CopA_M1-L620.cif A"
    60658 
    60659 > rename #33 "2024_06_04_12_31_model_0_CopA_L620-.cif A"
    60660 
    60661 > rename #33 "2024_06_04_12_31_model_0_CopA_L620-T777.cif A"
    60662 
    60663 > show #!17 models
    60664 
    60665 > show #!14 models
    60666 
    60667 > hide #!17 models
    60668 
    60669 > hide #!14 models
    60670 
    60671 > hide #!25.1 models
    60672 
    60673 > hide #!33 models
    60674 
    60675 > show #25.2 models
    60676 
    60677 > show #!16 models
    60678 
    60679 > show #!15 models
    60680 
    60681 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    60682 > dataset/Structure files/alphafold 3 /GT 20240604
    60683 > /fold_2024_06_04_12_31/20240710_leaf_fitting_alphafold_only_withAF3_v5.cxs"
    60684 
    60685 ——— End of log from Fri Jul 12 14:16:12 2024 ———
    60686 
    60687 opened ChimeraX session 
    60688 
    60689 > show #!1 models
    60690 
    60691 > hide #!16 models
    60692 
    60693 > show #!16 models
    60694 
    60695 > hide #!15 models
    60696 
    60697 > hide #!16 models
    60698 
    60699 > show #!25.1 models
    60700 
    60701 > show #25.3 models
    60702 
    60703 > show #25.4 models
    60704 
    60705 > show #25.5 models
    60706 
    60707 > show #25.6 models
    60708 
    60709 > show #25.7 models
    60710 
    60711 > show #25.8 models
    60712 
    60713 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    60714 > dataset/Structure files/alphafold 3 /GT 20240604
    60715 > /fold_2024_06_04_12_31/20240711_leaf_fitting_alphafold_only_withAF3_v6.cxs"
    60716 
    60717 > show #!30 models
    60718 
    60719 > hide #!30 models
    60720 
    60721 > show #27.2 models
    60722 
    60723 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    60724 > dataset/Structure files/alphafold 3 /GT 20240604
    60725 > /fold_2024_06_04_12_31/20240711_leaf_fitting_alphafold_only_withAF3_v6.cxs"
    60726 
    60727 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    60728 > dataset/Structure files/alphafold 3
    60729 > /fold_20240711_copi_golph3/fold_20240711_copi_golph3_full_data_0.json"
    60730 
    60731 Traceback (most recent call last): 
    60732 File
    60733 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    60734 packages/chimerax/open_command/dialog.py", line 334, in _qt_safe 
    60735 run(session, "open " + " ".join([FileNameArg.unparse(p) for p in paths]) + ("" 
    60736 File
    60737 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    60738 packages/chimerax/core/commands/run.py", line 49, in run 
    60739 results = command.run(text, log=log, return_json=return_json) 
    60740 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    60741 File
    60742 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    60743 packages/chimerax/core/commands/cli.py", line 3213, in run 
    60744 result = ci.function(session, **kw_args) 
    60745 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    60746 File
    60747 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    60748 packages/chimerax/open_command/cmd.py", line 131, in cmd_open 
    60749 models = Command(session, registry=registry).run(provider_cmd_text,
    60750 log=log)[0] 
    60751 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    60752 File
    60753 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    60754 packages/chimerax/core/commands/cli.py", line 3213, in run 
    60755 result = ci.function(session, **kw_args) 
    60756 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    60757 File
    60758 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    60759 packages/chimerax/open_command/cmd.py", line 213, in provider_open 
    60760 models, status = collated_open(session, None, [data], data_format,
    60761 _add_models, 
    60762 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    60763 File
    60764 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    60765 packages/chimerax/open_command/cmd.py", line 513, in collated_open 
    60766 return remember_data_format() 
    60767 ^^^^^^^^^^^^^^^^^^^^^^ 
    60768 File
    60769 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    60770 packages/chimerax/open_command/cmd.py", line 484, in remember_data_format 
    60771 models, status = func(*func_args, **func_kw) 
    60772 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    60773 File
    60774 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    60775 packages/chimerax/alphafold/__init__.py", line 129, in open 
    60776 structs = [m for m in session.models.list(type = AtomicStructure) 
    60777 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    60778 File
    60779 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    60780 packages/chimerax/alphafold/__init__.py", line 130, in   
    60781 if hasattr(m, 'filename') and dirname(m.filename) == dirname(path)] 
    60782 ^^^^^^^^^^^^^^^^^^^ 
    60783 File "", line 152, in dirname 
    60784 TypeError: expected str, bytes or os.PathLike object, not NoneType 
    60785  
    60786 TypeError: expected str, bytes or os.PathLike object, not NoneType 
    60787  
    60788 File "", line 152, in dirname 
    60789  
    60790 See log for complete Python traceback. 
    60791  
    60792 
    60793 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    60794 > dataset/Structure files/alphafold 3
    60795 > /fold_20240711_copi_golph3/fold_20240711_copi_golph3_model_0.cif"
    60796 
    60797 Chain information for fold_20240711_copi_golph3_model_0.cif #34 
    60798 --- 
    60799 Chain | Description 
    60800 A | . 
    60801 B C | . 
    60802 D | . 
    60803 E | . 
    60804 F | . 
    60805 G | . 
    60806 H | . 
    60807 I | . 
    60808  
    60809 
    60810 > select add #34
    60811 
    60812 35468 atoms, 36117 bonds, 4477 residues, 1 model selected 
    60813 
    60814 > hide sel atoms
    60815 
    60816 > show sel cartoons
    60817 
    60818 > ui mousemode right "translate selected models"
    60819 
    60820 > view matrix models #34,1,0,0,383.59,0,1,0,259.53,0,0,1,227.72
    60821 
    60822 > view matrix models #34,1,0,0,320.11,0,1,0,310.5,0,0,1,342.85
    60823 
    60824 > select subtract #34
    60825 
    60826 Nothing selected 
    60827 
    60828 > ui tool show Matchmaker
    60829 
    60830 The cached device pixel ratio value was stale on window expose. Please file a
    60831 QTBUG which explains how to reproduce. 
    60832 
    60833 > matchmaker #34 to #2
    60834 
    60835 Parameters 
    60836 --- 
    60837 Chain pairing | bb 
    60838 Alignment algorithm | Needleman-Wunsch 
    60839 Similarity matrix | BLOSUM-62 
    60840 SS fraction | 0.3 
    60841 Gap open (HH/SS/other) | 18/18/6 
    60842 Gap extend | 1 
    60843 SS matrix |  |  | H | S | O 
    60844 ---|---|---|--- 
    60845 H | 6 | -9 | -6 
    60846 S |  | 6 | -6 
    60847 O |  |  | 4 
    60848 Iteration cutoff | 2 
    60849  
    60850 Matchmaker CopA-Q8CIE6_E320-V642.pdb, chain A (#2) with
    60851 fold_20240711_copi_golph3_model_0.cif, chain D (#34), sequence alignment score
    60852 = 3817.3 
    60853 RMSD between 298 pruned atom pairs is 0.587 angstroms; (across all 324 pairs:
    60854 1.078) 
    60855  
    60856 
    60857 > hide #!25 models
    60858 
    60859 > hide #27.2 models
    60860 
    60861 > ui tool show "Fit in Map"
    60862 
    60863 The cached device pixel ratio value was stale on window expose. Please file a
    60864 QTBUG which explains how to reproduce. 
    60865 
    60866 > fitmap #34 inMap #1
    60867 
    60868 Fit molecule fold_20240711_copi_golph3_model_0.cif (#34) to map
    60869 relion_locres_filtered_20240326_GT.mrc (#1) using 35468 atoms 
    60870 average map value = 0.00656, steps = 116 
    60871 shifted from previous position = 6.74 
    60872 rotated from previous position = 3.63 degrees 
    60873 atoms outside contour = 22252, contour level = 0.0073613 
    60874  
    60875 Position of fold_20240711_copi_golph3_model_0.cif (#34) relative to
    60876 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    60877 Matrix rotation and translation 
    60878 0.58546173 0.33589766 0.73783964 228.27558541 
    60879 -0.09809695 -0.87408690 0.47576158 252.58695297 
    60880 0.80474316 -0.35092001 -0.47879389 262.95256421 
    60881 Axis -0.88313937 -0.07147266 -0.46363403 
    60882 Axis point 0.00000000 131.76923686 39.45816280 
    60883 Rotation angle (degrees) 152.09313163 
    60884 Shift along axis -341.56597663 
    60885  
    60886 
    60887 > split chains #34
    60888 
    60889 Expected a keyword 
    60890 
    60891 > split #34 chains
    60892 
    60893 Split fold_20240711_copi_golph3_model_0.cif (#34) into 9 models 
    60894 Chain information for fold_20240711_copi_golph3_model_0.cif A #34.1 
    60895 --- 
    60896 Chain | Description 
    60897 A | No description available 
    60898  
    60899 Chain information for fold_20240711_copi_golph3_model_0.cif B #34.2 
    60900 --- 
    60901 Chain | Description 
    60902 B | No description available 
    60903  
    60904 Chain information for fold_20240711_copi_golph3_model_0.cif C #34.3 
    60905 --- 
    60906 Chain | Description 
    60907 C | No description available 
    60908  
    60909 Chain information for fold_20240711_copi_golph3_model_0.cif D #34.4 
    60910 --- 
    60911 Chain | Description 
    60912 D | No description available 
    60913  
    60914 Chain information for fold_20240711_copi_golph3_model_0.cif E #34.5 
    60915 --- 
    60916 Chain | Description 
    60917 E | No description available 
    60918  
    60919 Chain information for fold_20240711_copi_golph3_model_0.cif F #34.6 
    60920 --- 
    60921 Chain | Description 
    60922 F | No description available 
    60923  
    60924 Chain information for fold_20240711_copi_golph3_model_0.cif G #34.7 
    60925 --- 
    60926 Chain | Description 
    60927 G | No description available 
    60928  
    60929 Chain information for fold_20240711_copi_golph3_model_0.cif H #34.8 
    60930 --- 
    60931 Chain | Description 
    60932 H | No description available 
    60933  
    60934 Chain information for fold_20240711_copi_golph3_model_0.cif I #34.9 
    60935 --- 
    60936 Chain | Description 
    60937 I | No description available 
    60938  
    60939 
    60940 > hide #34.1 models
    60941 
    60942 > hide #34.2 models
    60943 
    60944 > hide #34.3 models
    60945 
    60946 > hide #34.4 models
    60947 
    60948 > hide #34.5 models
    60949 
    60950 > hide #34.6 models
    60951 
    60952 > hide #34.7 models
    60953 
    60954 > hide #34.8 models
    60955 
    60956 > hide #34.9 models
    60957 
    60958 > show #34.1 models
    60959 
    60960 > color #34.1 #b21effff
    60961 
    60962 > fitmap #34.1 inMap #1
    60963 
    60964 Fit molecule fold_20240711_copi_golph3_model_0.cif A (#34.1) to map
    60965 relion_locres_filtered_20240326_GT.mrc (#1) using 2371 atoms 
    60966 average map value = 0.00748, steps = 68 
    60967 shifted from previous position = 6.3 
    60968 rotated from previous position = 8.74 degrees 
    60969 atoms outside contour = 1259, contour level = 0.0073613 
    60970  
    60971 Position of fold_20240711_copi_golph3_model_0.cif A (#34.1) relative to
    60972 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    60973 Matrix rotation and translation 
    60974 0.52771432 0.46260878 0.71239786 230.68377417 
    60975 0.01556661 -0.84381163 0.53641367 257.97236074 
    60976 0.84927927 -0.27198355 -0.45249273 263.23110022 
    60977 Axis -0.86565399 -0.14657638 -0.47870506 
    60978 Axis point -0.00000000 122.22516554 38.53470155 
    60979 Rotation angle (degrees) 152.16489046 
    60980 Shift along axis -363.51504457 
    60981  
    60982 
    60983 > hide #34.1 models
    60984 
    60985 > show #34.2 models
    60986 
    60987 > color #34.2 #ff009eff
    60988 
    60989 > fitmap #34.2 inMap #1
    60990 
    60991 Fit molecule fold_20240711_copi_golph3_model_0.cif B (#34.2) to map
    60992 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    60993 average map value = 0.007695, steps = 80 
    60994 shifted from previous position = 6.24 
    60995 rotated from previous position = 5.68 degrees 
    60996 atoms outside contour = 834, contour level = 0.0073613 
    60997  
    60998 Position of fold_20240711_copi_golph3_model_0.cif B (#34.2) relative to
    60999 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61000 Matrix rotation and translation 
    61001 0.64416681 0.35711118 0.67640278 226.66433422 
    61002 -0.02970052 -0.87197447 0.48864957 253.33862049 
    61003 0.76430818 -0.33486135 -0.55109063 256.83042733 
    61004 Axis -0.90092929 -0.09616940 -0.42317592 
    61005 Axis point 0.00000000 129.89043181 45.52689960 
    61006 Rotation angle (degrees) 152.80410812 
    61007 Shift along axis -337.25641452 
    61008  
    61009 
    61010 > hide #34.2 models
    61011 
    61012 > show #34.3 models
    61013 
    61014 > color #34.3 #ff00a9ff
    61015 
    61016 > fitmap #34.3 inMap #1
    61017 
    61018 Fit molecule fold_20240711_copi_golph3_model_0.cif C (#34.3) to map
    61019 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    61020 average map value = 0.007717, steps = 120 
    61021 shifted from previous position = 16.1 
    61022 rotated from previous position = 2.93 degrees 
    61023 atoms outside contour = 821, contour level = 0.0073613 
    61024  
    61025 Position of fold_20240711_copi_golph3_model_0.cif C (#34.3) relative to
    61026 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61027 Matrix rotation and translation 
    61028 0.55724589 0.30890177 0.77075075 216.26500571 
    61029 -0.12170943 -0.88781537 0.44381380 253.82096759 
    61030 0.82137923 -0.34112105 -0.45713520 251.42339780 
    61031 Axis -0.87533713 -0.05645945 -0.48020542 
    61032 Axis point 0.00000000 132.87199639 34.54285231 
    61033 Rotation angle (degrees) 153.36139527 
    61034 Shift along axis -324.37025870 
    61035  
    61036 
    61037 > hide #34.3 models
    61038 
    61039 > show #34.3 models
    61040 
    61041 > hide #34.3 models
    61042 
    61043 > show #34.4 models
    61044 
    61045 > color #34.4 #0024ffff
    61046 
    61047 > fitmap #34.4 inMap #1
    61048 
    61049 Fit molecule fold_20240711_copi_golph3_model_0.cif D (#34.4) to map
    61050 relion_locres_filtered_20240326_GT.mrc (#1) using 7166 atoms 
    61051 average map value = 0.007568, steps = 68 
    61052 shifted from previous position = 3.39 
    61053 rotated from previous position = 1.98 degrees 
    61054 atoms outside contour = 3864, contour level = 0.0073613 
    61055  
    61056 Position of fold_20240711_copi_golph3_model_0.cif D (#34.4) relative to
    61057 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61058 Matrix rotation and translation 
    61059 0.56992681 0.36183288 0.73774006 227.91110670 
    61060 -0.07205669 -0.87235986 0.48352467 256.55796769 
    61061 0.81852994 -0.32873278 -0.47110879 263.77891615 
    61062 Axis -0.87866866 -0.08739536 -0.46936494 
    61063 Axis point 0.00000000 131.04482198 39.47393179 
    61064 Rotation angle (degrees) 152.47024536 
    61065 Shift along axis -346.48889708 
    61066  
    61067 
    61068 > fitmap #34.4 inMap #1
    61069 
    61070 Fit molecule fold_20240711_copi_golph3_model_0.cif D (#34.4) to map
    61071 relion_locres_filtered_20240326_GT.mrc (#1) using 7166 atoms 
    61072 average map value = 0.007567, steps = 44 
    61073 shifted from previous position = 0.0262 
    61074 rotated from previous position = 0.00836 degrees 
    61075 atoms outside contour = 3859, contour level = 0.0073613 
    61076  
    61077 Position of fold_20240711_copi_golph3_model_0.cif D (#34.4) relative to
    61078 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61079 Matrix rotation and translation 
    61080 0.56999916 0.36178137 0.73770943 227.93094964 
    61081 -0.07197947 -0.87240559 0.48345366 256.54968376 
    61082 0.81848635 -0.32866811 -0.47122963 263.79414942 
    61083 Axis -0.87869372 -0.08739844 -0.46931745 
    61084 Axis point 0.00000000 131.03935522 39.49351975 
    61085 Rotation angle (degrees) 152.47608536 
    61086 Shift along axis -346.50673304 
    61087  
    61088 
    61089 > hide #34.4 models
    61090 
    61091 > show #34.5 models
    61092 
    61093 > fitmap #34.5 inMap #1
    61094 
    61095 Fit molecule fold_20240711_copi_golph3_model_0.cif E (#34.5) to map
    61096 relion_locres_filtered_20240326_GT.mrc (#1) using 7501 atoms 
    61097 average map value = 0.008391, steps = 104 
    61098 shifted from previous position = 1.23 
    61099 rotated from previous position = 1.02 degrees 
    61100 atoms outside contour = 4038, contour level = 0.0073613 
    61101  
    61102 Position of fold_20240711_copi_golph3_model_0.cif E (#34.5) relative to
    61103 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61104 Matrix rotation and translation 
    61105 0.58719953 0.35086370 0.72944594 227.28064832 
    61106 -0.08423493 -0.86979043 0.48617805 251.90546793 
    61107 0.80504732 -0.34692835 -0.48118555 262.65301991 
    61108 Axis -0.88354151 -0.08017819 -0.46143890 
    61109 Axis point 0.00000000 130.49029375 40.15321991 
    61110 Rotation angle (degrees) 151.87098420 
    61111 Shift along axis -342.20753257 
    61112  
    61113 
    61114 > fitmap #34.5 inMap #1
    61115 
    61116 Fit molecule fold_20240711_copi_golph3_model_0.cif E (#34.5) to map
    61117 relion_locres_filtered_20240326_GT.mrc (#1) using 7501 atoms 
    61118 average map value = 0.008391, steps = 76 
    61119 shifted from previous position = 0.0209 
    61120 rotated from previous position = 0.00496 degrees 
    61121 atoms outside contour = 4035, contour level = 0.0073613 
    61122  
    61123 Position of fold_20240711_copi_golph3_model_0.cif E (#34.5) relative to
    61124 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61125 Matrix rotation and translation 
    61126 0.58722470 0.35088756 0.72941420 227.26576357 
    61127 -0.08415396 -0.86980219 0.48617103 251.91606564 
    61128 0.80503743 -0.34687473 -0.48124075 262.66279930 
    61129 Axis -0.88355045 -0.08020801 -0.46141659 
    61130 Axis point 0.00000000 130.49372789 40.16867906 
    61131 Rotation angle (degrees) 151.87352378 
    61132 Shift along axis -342.20342816 
    61133  
    61134 
    61135 > fitmap #34.5 inMap #1
    61136 
    61137 Fit molecule fold_20240711_copi_golph3_model_0.cif E (#34.5) to map
    61138 relion_locres_filtered_20240326_GT.mrc (#1) using 7501 atoms 
    61139 average map value = 0.008391, steps = 80 
    61140 shifted from previous position = 0.011 
    61141 rotated from previous position = 0.0181 degrees 
    61142 atoms outside contour = 4035, contour level = 0.0073613 
    61143  
    61144 Position of fold_20240711_copi_golph3_model_0.cif E (#34.5) relative to
    61145 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61146 Matrix rotation and translation 
    61147 0.58741011 0.35090953 0.72925432 227.26213947 
    61148 -0.08392848 -0.86983144 0.48615767 251.91860141 
    61149 0.80492569 -0.34677914 -0.48149648 262.64949044 
    61150 Axis -0.88360949 -0.08027493 -0.46129189 
    61151 Axis point 0.00000000 130.48784527 40.19498052 
    61152 Rotation angle (degrees) 151.87957518 
    61153 Shift along axis -342.19181048 
    61154  
    61155 
    61156 > fitmap #34.5 inMap #1
    61157 
    61158 Fit molecule fold_20240711_copi_golph3_model_0.cif E (#34.5) to map
    61159 relion_locres_filtered_20240326_GT.mrc (#1) using 7501 atoms 
    61160 average map value = 0.008392, steps = 96 
    61161 shifted from previous position = 0.0102 
    61162 rotated from previous position = 0.00763 degrees 
    61163 atoms outside contour = 4036, contour level = 0.0073613 
    61164  
    61165 Position of fold_20240711_copi_golph3_model_0.cif E (#34.5) relative to
    61166 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61167 Matrix rotation and translation 
    61168 0.58750289 0.35083317 0.72921632 227.26656106 
    61169 -0.08398670 -0.86983061 0.48614910 251.92182627 
    61170 0.80485191 -0.34685847 -0.48156267 262.64059694 
    61171 Axis -0.88363648 -0.08023260 -0.46124755 
    61172 Axis point 0.00000000 130.49742196 40.19320920 
    61173 Rotation angle (degrees) 151.87790907 
    61174 Shift along axis -342.17569793 
    61175  
    61176 
    61177 > color #34.5 #0a6f00ff
    61178 
    61179 > show #32.1 models
    61180 
    61181 > hide #32.1 models
    61182 
    61183 > show #32.1 models
    61184 
    61185 > hide #32.1 models
    61186 
    61187 > hide #34.5 models
    61188 
    61189 > show #34.6 models
    61190 
    61191 > color #34.6 cyan
    61192 
    61193 > fitmap #34.6 inMap #1
    61194 
    61195 Fit molecule fold_20240711_copi_golph3_model_0.cif F (#34.6) to map
    61196 relion_locres_filtered_20240326_GT.mrc (#1) using 7214 atoms 
    61197 average map value = 0.008416, steps = 88 
    61198 shifted from previous position = 2.83 
    61199 rotated from previous position = 5.13 degrees 
    61200 atoms outside contour = 3516, contour level = 0.0073613 
    61201  
    61202 Position of fold_20240711_copi_golph3_model_0.cif F (#34.6) relative to
    61203 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61204 Matrix rotation and translation 
    61205 0.58316797 0.35661943 0.72988883 229.42465943 
    61206 -0.01511797 -0.89356886 0.44867152 249.28076519 
    61207 0.81221092 -0.27268529 -0.51570938 258.75772005 
    61208 Axis -0.88437088 -0.10092544 -0.45574357 
    61209 Axis point 0.00000000 123.73222530 44.42705025 
    61210 Rotation angle (degrees) 155.93102330 
    61211 Shift along axis -345.98242545 
    61212  
    61213 
    61214 > hide #34.6 models
    61215 
    61216 > show #34.7 models
    61217 
    61218 > fitmap #34.7 inMap #1
    61219 
    61220 Fit molecule fold_20240711_copi_golph3_model_0.cif G (#34.7) to map
    61221 relion_locres_filtered_20240326_GT.mrc (#1) using 2130 atoms 
    61222 average map value = 0.007774, steps = 60 
    61223 shifted from previous position = 3.19 
    61224 rotated from previous position = 3.76 degrees 
    61225 atoms outside contour = 1200, contour level = 0.0073613 
    61226  
    61227 Position of fold_20240711_copi_golph3_model_0.cif G (#34.7) relative to
    61228 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61229 Matrix rotation and translation 
    61230 0.60590881 0.38239877 0.69759995 225.80992915 
    61231 -0.05307526 -0.85551020 0.51505855 251.49460333 
    61232 0.79376163 -0.34910382 -0.49806526 260.96610639 
    61233 Axis -0.88864344 -0.09888587 -0.44781069 
    61234 Axis point 0.00000000 128.89841076 41.81263691 
    61235 Rotation angle (degrees) 150.90719891 
    61236 Shift along axis -342.39718752 
    61237  
    61238 
    61239 > fitmap #34.7 inMap #1
    61240 
    61241 Fit molecule fold_20240711_copi_golph3_model_0.cif G (#34.7) to map
    61242 relion_locres_filtered_20240326_GT.mrc (#1) using 2130 atoms 
    61243 average map value = 0.007775, steps = 44 
    61244 shifted from previous position = 0.0414 
    61245 rotated from previous position = 0.0326 degrees 
    61246 atoms outside contour = 1203, contour level = 0.0073613 
    61247  
    61248 Position of fold_20240711_copi_golph3_model_0.cif G (#34.7) relative to
    61249 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61250 Matrix rotation and translation 
    61251 0.60610451 0.38203307 0.69763032 225.82071776 
    61252 -0.05295935 -0.85576756 0.51464279 251.53576995 
    61253 0.79361996 -0.34887336 -0.49845235 260.95147721 
    61254 Axis -0.88871636 -0.09879093 -0.44768692 
    61255 Axis point 0.00000000 128.92145471 41.84455385 
    61256 Rotation angle (degrees) 150.93364992 
    61257 Shift along axis -342.36458246 
    61258  
    61259 
    61260 > color #34.7 #bf6300ff
    61261 
    61262 > hide #34.7 models
    61263 
    61264 > show #34.8 models
    61265 
    61266 > fitmap #34.8 inMap #1
    61267 
    61268 Fit molecule fold_20240711_copi_golph3_model_0.cif H (#34.8) to map
    61269 relion_locres_filtered_20240326_GT.mrc (#1) using 4752 atoms 
    61270 average map value = 0.007743, steps = 128 
    61271 shifted from previous position = 7.22 
    61272 rotated from previous position = 9.05 degrees 
    61273 atoms outside contour = 2924, contour level = 0.0073613 
    61274  
    61275 Position of fold_20240711_copi_golph3_model_0.cif H (#34.8) relative to
    61276 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61277 Matrix rotation and translation 
    61278 0.60711318 0.39430654 0.68988111 230.62646417 
    61279 -0.16058066 -0.78940106 0.59250301 257.81976511 
    61280 0.77822069 -0.47049795 -0.41593778 262.55156168 
    61281 Axis -0.88409384 -0.07347169 -0.46149756 
    61282 Axis point 0.00000000 138.94204460 27.13554287 
    61283 Rotation angle (degrees) 143.04546715 
    61284 Shift along axis -344.00479526 
    61285  
    61286 
    61287 > color #34.8 #24fa00ff
    61288 
    61289 > hide #34.8 models
    61290 
    61291 > color #34.9 #eff0f0ff
    61292 
    61293 > color #34.9 #fffa00ff
    61294 
    61295 > show #34.9 models
    61296 
    61297 > fitmap #34.9 inMap #1
    61298 
    61299 Fit molecule fold_20240711_copi_golph3_model_0.cif I (#34.9) to map
    61300 relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms 
    61301 average map value = 0.007202, steps = 180 
    61302 shifted from previous position = 14.7 
    61303 rotated from previous position = 20.8 degrees 
    61304 atoms outside contour = 883, contour level = 0.0073613 
    61305  
    61306 Position of fold_20240711_copi_golph3_model_0.cif I (#34.9) relative to
    61307 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61308 Matrix rotation and translation 
    61309 0.74653717 0.33711316 0.57361745 245.26298776 
    61310 0.15110497 -0.92551307 0.34726481 263.21012299 
    61311 0.64795798 -0.17256964 -0.74186938 278.68417065 
    61312 Axis -0.93311848 -0.13344349 -0.33389029 
    61313 Axis point 0.00000000 126.20926941 79.04979370 
    61314 Rotation angle (degrees) 163.82650418 
    61315 Shift along axis -357.03304509 
    61316  
    61317 
    61318 > hide #!1 models
    61319 
    61320 > show #10 models
    61321 
    61322 > hide #10 models
    61323 
    61324 > show #10 models
    61325 
    61326 > hide #34.9 models
    61327 
    61328 > show #34.9 models
    61329 
    61330 > select add #34.9
    61331 
    61332 1420 atoms, 1441 bonds, 177 residues, 1 model selected 
    61333 
    61334 > view matrix models
    61335 > #34.9,0.74828,0.34766,0.56499,301.82,0.15396,-0.91943,0.36186,343.01,0.64527,-0.18378,-0.74152,352.83
    61336 
    61337 > ui mousemode right "rotate selected models"
    61338 
    61339 > view matrix models
    61340 > #34.9,0.37364,0.83003,0.41405,310.38,0.82373,-0.091695,-0.55951,370.79,-0.42645,0.55013,-0.71799,360.84
    61341 
    61342 > view matrix models
    61343 > #34.9,-0.78088,0.59563,0.18825,341.65,0.61218,0.66973,0.42035,317.47,0.12429,0.44349,-0.88762,361.96
    61344 
    61345 > view matrix models
    61346 > #34.9,-0.35045,0.13998,0.92606,302.58,-0.5316,0.78433,-0.31973,370.91,-0.77109,-0.60434,-0.20046,351.51
    61347 
    61348 > view matrix models
    61349 > #34.9,0.10437,0.19584,0.97507,292.62,-0.42105,0.89692,-0.13507,358.86,-0.90101,-0.39645,0.17607,332.6
    61350 
    61351 > fitmap #34.9 inMap #1
    61352 
    61353 Fit molecule fold_20240711_copi_golph3_model_0.cif I (#34.9) to map
    61354 relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms 
    61355 average map value = 0.007558, steps = 172 
    61356 shifted from previous position = 5.84 
    61357 rotated from previous position = 30.3 degrees 
    61358 atoms outside contour = 803, contour level = 0.0073613 
    61359  
    61360 Position of fold_20240711_copi_golph3_model_0.cif I (#34.9) relative to
    61361 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61362 Matrix rotation and translation 
    61363 -0.26830525 0.10951105 0.95708913 240.47366535 
    61364 -0.09219807 0.98603763 -0.13866968 276.40976195 
    61365 -0.95891177 -0.12544757 -0.25446237 278.46557109 
    61366 Axis 0.00686280 0.99448069 -0.10469506 
    61367 Axis point 235.50650213 0.00000000 62.60461133 
    61368 Rotation angle (degrees) 105.56699787 
    61369 Shift along axis 247.38052555 
    61370  
    61371 
    61372 > view matrix models
    61373 > #34.9,0.71072,-0.27814,0.64615,307.37,0.22556,-0.77992,-0.58383,387.44,0.66633,0.56068,-0.49157,335.49
    61374 
    61375 > view matrix models
    61376 > #34.9,0.32684,-0.94017,0.096226,347.28,0.89604,0.2759,-0.34783,355,0.30047,0.19991,0.93261,273.29
    61377 
    61378 > view matrix models
    61379 > #34.9,-0.062416,-0.94261,-0.32802,374.51,0.92237,0.071062,-0.37971,358.21,0.38123,-0.32626,0.865,280.61
    61380 
    61381 > color #34.9 #73fdffff
    61382 
    61383 > view matrix models
    61384 > #34.9,-0.87509,-0.19817,0.44153,341.08,0.23219,0.62855,0.7423,307.09,-0.42462,0.7521,-0.50403,350.92
    61385 
    61386 > view matrix models
    61387 > #34.9,-0.45011,0.72378,0.52301,321.45,0.70663,0.64679,-0.28695,351.21,-0.54596,0.24041,-0.80257,372.75
    61388 
    61389 > view matrix models
    61390 > #34.9,-0.6968,0.27512,0.6624,322.65,0.50668,0.84247,0.18309,328.8,-0.50768,0.4632,-0.72643,366.17
    61391 
    61392 > fitmap #34.9 inMap #1
    61393 
    61394 Fit molecule fold_20240711_copi_golph3_model_0.cif I (#34.9) to map
    61395 relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms 
    61396 average map value = 0.007908, steps = 88 
    61397 shifted from previous position = 2.18 
    61398 rotated from previous position = 14 degrees 
    61399 atoms outside contour = 732, contour level = 0.0073613 
    61400  
    61401 Position of fold_20240711_copi_golph3_model_0.cif I (#34.9) relative to
    61402 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61403 Matrix rotation and translation 
    61404 -0.67161254 0.33110185 0.66280324 259.75065098 
    61405 0.40793397 0.91203340 -0.04224840 265.74184674 
    61406 -0.61848723 0.24200541 -0.74760077 294.34280962 
    61407 Axis 0.21621363 0.97459545 0.05844127 
    61408 Axis point 153.26883916 0.00000000 103.06975835 
    61409 Rotation angle (degrees) 138.90231543 
    61410 Shift along axis 332.35419188 
    61411  
    61412 
    61413 > view matrix models
    61414 > #34.9,-0.3835,-0.29515,0.87511,313.33,-0.093113,0.95509,0.28132,333.04,-0.91884,0.0264,-0.39375,360.07
    61415 
    61416 > fitmap #34.9 inMap #1
    61417 
    61418 Fit molecule fold_20240711_copi_golph3_model_0.cif I (#34.9) to map
    61419 relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms 
    61420 average map value = 0.007916, steps = 232 
    61421 shifted from previous position = 7.32 
    61422 rotated from previous position = 23.5 degrees 
    61423 atoms outside contour = 740, contour level = 0.0073613 
    61424  
    61425 Position of fold_20240711_copi_golph3_model_0.cif I (#34.9) relative to
    61426 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61427 Matrix rotation and translation 
    61428 -0.17303343 -0.17503221 0.96923843 241.59813206 
    61429 0.25142938 0.94362700 0.21529357 259.75433651 
    61430 -0.95228287 0.28094801 -0.11927077 273.76469403 
    61431 Axis 0.03333776 0.97570281 0.21654705 
    61432 Axis point 204.14769021 0.00000000 8.83996268 
    61433 Rotation angle (degrees) 100.04017117 
    61434 Shift along axis 320.78031311 
    61435  
    61436 
    61437 > view matrix models
    61438 > #34.9,-0.95748,-0.19083,-0.21639,375.58,0.28844,-0.6501,-0.70297,397.03,-0.0065236,-0.73549,0.6775,306.16
    61439 
    61440 > view matrix models
    61441 > #34.9,-0.90104,-0.29832,-0.31485,380.71,0.43099,-0.5344,-0.72709,394.92,0.048654,-0.79084,0.61009,309.24
    61442 
    61443 > view matrix models
    61444 > #34.9,-0.88531,-0.33626,-0.32118,381.16,0.45673,-0.49906,-0.73643,394.65,0.087344,-0.79867,0.5954,309.46
    61445 
    61446 > ui mousemode right "translate selected models"
    61447 
    61448 > view matrix models
    61449 > #34.9,-0.88531,-0.33626,-0.32118,372.76,0.45673,-0.49906,-0.73643,381.8,0.087344,-0.79867,0.5954,309.71
    61450 
    61451 > fitmap #34.9 inMap #1
    61452 
    61453 Fit molecule fold_20240711_copi_golph3_model_0.cif I (#34.9) to map
    61454 relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms 
    61455 average map value = 0.007313, steps = 212 
    61456 shifted from previous position = 10 
    61457 rotated from previous position = 15.2 degrees 
    61458 atoms outside contour = 862, contour level = 0.0073613 
    61459  
    61460 Position of fold_20240711_copi_golph3_model_0.cif I (#34.9) relative to
    61461 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61462 Matrix rotation and translation 
    61463 -0.77843807 -0.55264862 -0.29768046 310.77651000 
    61464 0.54683725 -0.36417671 -0.75388614 313.10382630 
    61465 0.30822585 -0.74963644 0.58569788 232.63476634 
    61466 Axis 0.00338515 -0.48264302 0.87581063 
    61467 Axis point 86.62936034 283.23574831 0.00000000 
    61468 Rotation angle (degrees) 141.11964909 
    61469 Shift along axis 53.67864989 
    61470  
    61471 
    61472 > view matrix models
    61473 > #34.9,-0.78344,-0.55233,-0.28489,371.74,0.53391,-0.36355,-0.7634,381.48,0.31807,-0.75018,0.57971,303.13
    61474 
    61475 > ui mousemode right "rotate selected models"
    61476 
    61477 > view matrix models
    61478 > #34.9,-0.62244,-0.50088,0.6014,324.37,-0.021401,0.77901,0.62665,309.13,-0.78238,0.37718,-0.4956,362.76
    61479 
    61480 > view matrix models
    61481 > #34.9,-0.76847,-0.46048,0.44431,334.08,-0.21176,0.83825,0.50249,317.67,-0.60383,0.29206,-0.74168,373.19
    61482 
    61483 The cached device pixel ratio value was stale on window expose. Please file a
    61484 QTBUG which explains how to reproduce. 
    61485 
    61486 > ui mousemode right "translate selected models"
    61487 
    61488 > view matrix models
    61489 > #34.9,-0.76847,-0.46048,0.44431,340.36,-0.21176,0.83825,0.50249,331.15,-0.60383,0.29206,-0.74168,369.61
    61490 
    61491 > view matrix models
    61492 > #34.9,-0.76847,-0.46048,0.44431,336.23,-0.21176,0.83825,0.50249,331.27,-0.60383,0.29206,-0.74168,369.31
    61493 
    61494 > ui mousemode right "rotate selected models"
    61495 
    61496 > view matrix models
    61497 > #34.9,-0.48926,-0.34807,0.79967,313.05,0.28899,0.80041,0.5252,322.84,-0.82287,0.48805,-0.29102,348.16
    61498 
    61499 > ui mousemode right "translate selected models"
    61500 
    61501 > view matrix models
    61502 > #34.9,-0.48926,-0.34807,0.79967,317.57,0.28899,0.80041,0.5252,328.11,-0.82287,0.48805,-0.29102,351.95
    61503 
    61504 > view matrix models
    61505 > #34.9,-0.48926,-0.34807,0.79967,319.73,0.28899,0.80041,0.5252,325.65,-0.82287,0.48805,-0.29102,352.6
    61506 
    61507 > fitmap #34.9 inMap #1
    61508 
    61509 Fit molecule fold_20240711_copi_golph3_model_0.cif I (#34.9) to map
    61510 relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms 
    61511 average map value = 0.007916, steps = 120 
    61512 shifted from previous position = 3.53 
    61513 rotated from previous position = 23.8 degrees 
    61514 atoms outside contour = 739, contour level = 0.0073613 
    61515  
    61516 Position of fold_20240711_copi_golph3_model_0.cif I (#34.9) relative to
    61517 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61518 Matrix rotation and translation 
    61519 -0.17363841 -0.17473580 0.96918372 241.60893560 
    61520 0.25146371 0.94364305 0.21518312 259.77002142 
    61521 -0.95216369 0.28107859 -0.11991297 273.77647355 
    61522 Axis 0.03346386 0.97572269 0.21643797 
    61523 Axis point 204.09647485 0.00000000 8.93729259 
    61524 Rotation angle (degrees) 100.07599094 
    61525 Shift along axis 320.80429641 
    61526  
    61527 
    61528 > select subtract #34.9
    61529 
    61530 Nothing selected 
    61531 
    61532 > show #!1 models
    61533 
    61534 > hide #34.9 models
    61535 
    61536 > show #34.9 models
    61537 
    61538 > hide #34.9 models
    61539 
    61540 > show #34.9 models
    61541 
    61542 The cached device pixel ratio value was stale on window expose. Please file a
    61543 QTBUG which explains how to reproduce. 
    61544 
    61545 > color #34.9 #fffa00ff
    61546 
    61547 > hide #34.9 models
    61548 
    61549 > ui tool show Matchmaker
    61550 
    61551 The cached device pixel ratio value was stale on window expose. Please file a
    61552 QTBUG which explains how to reproduce. 
    61553 
    61554 > matchmaker #34.9 & sel to #10 & sel
    61555 
    61556 No 'to' model specified 
    61557 
    61558 > ui tool show Matchmaker
    61559 
    61560 > matchmaker #34.9 & sel to #10
    61561 
    61562 No molecules/chains to match specified 
    61563 
    61564 > ui tool show Matchmaker
    61565 
    61566 > show #34.8 models
    61567 
    61568 > show #34.6 models
    61569 
    61570 > show #34.7 models
    61571 
    61572 > show #34.5 models
    61573 
    61574 > show #34.4 models
    61575 
    61576 > show #34.3 models
    61577 
    61578 > show #34.2 models
    61579 
    61580 > show #34.1 models
    61581 
    61582 > ui tool show Matchmaker
    61583 
    61584 > matchmaker #34.9 to #10
    61585 
    61586 Parameters 
    61587 --- 
    61588 Chain pairing | bb 
    61589 Alignment algorithm | Needleman-Wunsch 
    61590 Similarity matrix | BLOSUM-62 
    61591 SS fraction | 0.3 
    61592 Gap open (HH/SS/other) | 18/18/6 
    61593 Gap extend | 1 
    61594 SS matrix |  |  | H | S | O 
    61595 ---|---|---|--- 
    61596 H | 6 | -9 | -6 
    61597 S |  | 6 | -6 
    61598 O |  |  | 4 
    61599 Iteration cutoff | 2 
    61600  
    61601 Matchmaker CopZ1_P61924_M1-V153.pdb, chain A (#10) with
    61602 fold_20240711_copi_golph3_model_0.cif I, chain I (#34.9), sequence alignment
    61603 score = 834 
    61604 RMSD between 144 pruned atom pairs is 0.487 angstroms; (across all 153 pairs:
    61605 1.639) 
    61606  
    61607 
    61608 > show #34.9 models
    61609 
    61610 > hide #34.9 models
    61611 
    61612 > show #34.9 models
    61613 
    61614 > hide #!1 models
    61615 
    61616 > hide #10 models
    61617 
    61618 > ui tool show Matchmaker
    61619 
    61620 The cached device pixel ratio value was stale on window expose. Please file a
    61621 QTBUG which explains how to reproduce. 
    61622 
    61623 > show #5 models
    61624 
    61625 > hide #5 models
    61626 
    61627 > show #5 models
    61628 
    61629 > hide #5 models
    61630 
    61631 > show #6 models
    61632 
    61633 > hide #6 models
    61634 
    61635 > show #6 models
    61636 
    61637 > hide #6 models
    61638 
    61639 > show #6 models
    61640 
    61641 > hide #34.2 models
    61642 
    61643 > show #34.2 models
    61644 
    61645 > ui tool show Matchmaker
    61646 
    61647 > matchmaker #34.2 to #6
    61648 
    61649 Parameters 
    61650 --- 
    61651 Chain pairing | bb 
    61652 Alignment algorithm | Needleman-Wunsch 
    61653 Similarity matrix | BLOSUM-62 
    61654 SS fraction | 0.3 
    61655 Gap open (HH/SS/other) | 18/18/6 
    61656 Gap extend | 1 
    61657 SS matrix |  |  | H | S | O 
    61658 ---|---|---|--- 
    61659 H | 6 | -9 | -6 
    61660 S |  | 6 | -6 
    61661 O |  |  | 4 
    61662 Iteration cutoff | 2 
    61663  
    61664 Matchmaker Arf1-P84077-human.pdb, chain A (#6) with
    61665 fold_20240711_copi_golph3_model_0.cif B, chain B (#34.2), sequence alignment
    61666 score = 902.5 
    61667 RMSD between 160 pruned atom pairs is 0.730 angstroms; (across all 181 pairs:
    61668 6.148) 
    61669  
    61670 
    61671 > hide #34.3 models
    61672 
    61673 > show #34.3 models
    61674 
    61675 > hide #6 models
    61676 
    61677 > show #22 models
    61678 
    61679 > hide #22 models
    61680 
    61681 > show #22 models
    61682 
    61683 > hide #22 models
    61684 
    61685 > show #23 models
    61686 
    61687 > hide #23 models
    61688 
    61689 > show #23 models
    61690 
    61691 > hide #23 models
    61692 
    61693 > show #23 models
    61694 
    61695 > hide #23 models
    61696 
    61697 > ui tool show Matchmaker
    61698 
    61699 The cached device pixel ratio value was stale on window expose. Please file a
    61700 QTBUG which explains how to reproduce. 
    61701 
    61702 > matchmaker #34.3 to #23
    61703 
    61704 Parameters 
    61705 --- 
    61706 Chain pairing | bb 
    61707 Alignment algorithm | Needleman-Wunsch 
    61708 Similarity matrix | BLOSUM-62 
    61709 SS fraction | 0.3 
    61710 Gap open (HH/SS/other) | 18/18/6 
    61711 Gap extend | 1 
    61712 SS matrix |  |  | H | S | O 
    61713 ---|---|---|--- 
    61714 H | 6 | -9 | -6 
    61715 S |  | 6 | -6 
    61716 O |  |  | 4 
    61717 Iteration cutoff | 2 
    61718  
    61719 Matchmaker Arf1-P84077-human.pdb, chain A (#23) with
    61720 fold_20240711_copi_golph3_model_0.cif C, chain C (#34.3), sequence alignment
    61721 score = 902.5 
    61722 RMSD between 157 pruned atom pairs is 0.695 angstroms; (across all 181 pairs:
    61723 6.432) 
    61724  
    61725 
    61726 > hide #34.3 models
    61727 
    61728 > show #34.3 models
    61729 
    61730 > show #!1 models
    61731 
    61732 > fitmap #34.3 inMap #1
    61733 
    61734 Fit molecule fold_20240711_copi_golph3_model_0.cif C (#34.3) to map
    61735 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    61736 average map value = 0.01001, steps = 68 
    61737 shifted from previous position = 0.227 
    61738 rotated from previous position = 2.22 degrees 
    61739 atoms outside contour = 623, contour level = 0.0073613 
    61740  
    61741 Position of fold_20240711_copi_golph3_model_0.cif C (#34.3) relative to
    61742 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61743 Matrix rotation and translation 
    61744 -0.54968172 0.35481834 -0.75627637 335.66728281 
    61745 0.52670407 0.84989962 0.01592060 166.85451496 
    61746 0.64840792 -0.38958258 -0.65405855 271.13399774 
    61747 Axis -0.27545663 -0.95419623 0.11676126 
    61748 Axis point 75.48007854 0.00000000 209.04048356 
    61749 Rotation angle (degrees) 132.60345266 
    61750 Shift along axis -220.01578155 
    61751  
    61752 
    61753 > fitmap #34.3 inMap #1
    61754 
    61755 Fit molecule fold_20240711_copi_golph3_model_0.cif C (#34.3) to map
    61756 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    61757 average map value = 0.01001, steps = 84 
    61758 shifted from previous position = 0.0284 
    61759 rotated from previous position = 0.0625 degrees 
    61760 atoms outside contour = 624, contour level = 0.0073613 
    61761  
    61762 Position of fold_20240711_copi_golph3_model_0.cif C (#34.3) relative to
    61763 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61764 Matrix rotation and translation 
    61765 -0.54962853 0.35489903 -0.75627717 335.67547785 
    61766 0.52746175 0.84944131 0.01528258 166.85707183 
    61767 0.64783684 -0.39050754 -0.65407285 271.22274561 
    61768 Axis -0.27572382 -0.95405890 0.11725188 
    61769 Axis point 75.43029175 0.00000000 209.10692899 
    61770 Rotation angle (degrees) 132.61977887 
    61771 Shift along axis -219.94382110 
    61772  
    61773 
    61774 > hide #!1 models
    61775 
    61776 > show #!1 models
    61777 
    61778 > show #!40 models
    61779 
    61780 > hide #!40 models
    61781 
    61782 > show #!40 models
    61783 
    61784 > hide #!40 models
    61785 
    61786 > show #!40 models
    61787 
    61788 > hide #!40 models
    61789 
    61790 > hide #34.1 models
    61791 
    61792 > show #34.1 models
    61793 
    61794 > hide #34.5 models
    61795 
    61796 > show #34.5 models
    61797 
    61798 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    61799 > dataset/Structure files/alphafold 3
    61800 > /fold_20240711_copi_golph3/20240711_leaf_fitting_alphafold_withGolph3AF3_v1.cxs"
    61801 
    61802 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    61803 > dataset/Structure files/alphafold 3
    61804 > /fold_20240711_copi_golph3/20240711_leaf_fitting_alphafold_withGolph3AF3_v2.cxs"
    61805 
    61806 ——— End of log from Sat Jul 13 09:14:12 2024 ———
    61807 
    61808 opened ChimeraX session 
    61809 
    61810 > hide #!1 models
    61811 
    61812 > show #!1 models
    61813 
    61814 > hide #34.1 models
    61815 
    61816 > show #34.1 models
    61817 
    61818 The cached device pixel ratio value was stale on window expose. Please file a
    61819 QTBUG which explains how to reproduce. 
    61820 
    61821 > hide #34.1 models
    61822 
    61823 > hide #34.2 models
    61824 
    61825 > show #34.2 models
    61826 
    61827 > hide #34.2 models
    61828 
    61829 > show #34.2 models
    61830 
    61831 > ui tool show "Fit in Map"
    61832 
    61833 The cached device pixel ratio value was stale on window expose. Please file a
    61834 QTBUG which explains how to reproduce. 
    61835 
    61836 > fitmap #34.2 inMap #1
    61837 
    61838 Fit molecule fold_20240711_copi_golph3_model_0.cif B (#34.2) to map
    61839 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    61840 average map value = 0.007695, steps = 64 
    61841 shifted from previous position = 0.248 
    61842 rotated from previous position = 2.71 degrees 
    61843 atoms outside contour = 834, contour level = 0.0073613 
    61844  
    61845 Position of fold_20240711_copi_golph3_model_0.cif B (#34.2) relative to
    61846 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61847 Matrix rotation and translation 
    61848 0.64432560 0.35698285 0.67631928 226.65167399 
    61849 -0.03018417 -0.87180479 0.48892261 253.33060500 
    61850 0.76415537 -0.33543949 -0.55095092 256.82984099 
    61851 Axis -0.90096298 -0.09599795 -0.42314311 
    61852 Axis point 0.00000000 129.93033443 45.49616360 
    61853 Rotation angle (degrees) 152.77477596 
    61854 Shift along axis -337.19976560 
    61855  
    61856 
    61857 > fitmap #34.2 inMap #1
    61858 
    61859 Fit molecule fold_20240711_copi_golph3_model_0.cif B (#34.2) to map
    61860 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    61861 average map value = 0.007695, steps = 48 
    61862 shifted from previous position = 0.0361 
    61863 rotated from previous position = 0.046 degrees 
    61864 atoms outside contour = 835, contour level = 0.0073613 
    61865  
    61866 Position of fold_20240711_copi_golph3_model_0.cif B (#34.2) relative to
    61867 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61868 Matrix rotation and translation 
    61869 0.64411089 0.35714951 0.67643580 226.66372194 
    61870 -0.02956162 -0.87202532 0.48856725 253.34453506 
    61871 0.76436070 -0.33468803 -0.55112308 256.83246742 
    61872 Axis -0.90091671 -0.09621926 -0.42319136 
    61873 Axis point 0.00000000 129.88083392 45.53649969 
    61874 Rotation angle (degrees) 152.81283600 
    61875 Shift along axis -337.27104026 
    61876  
    61877 
    61878 > fitmap #34.2 inMap #1
    61879 
    61880 Fit molecule fold_20240711_copi_golph3_model_0.cif B (#34.2) to map
    61881 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    61882 average map value = 0.007695, steps = 48 
    61883 shifted from previous position = 0.0337 
    61884 rotated from previous position = 0.0592 degrees 
    61885 atoms outside contour = 833, contour level = 0.0073613 
    61886  
    61887 Position of fold_20240711_copi_golph3_model_0.cif B (#34.2) relative to
    61888 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61889 Matrix rotation and translation 
    61890 0.64471671 0.35650419 0.67619903 226.68116161 
    61891 -0.03020175 -0.87201891 0.48853954 253.32157186 
    61892 0.76382473 -0.33539200 -0.55143811 256.79928251 
    61893 Axis -0.90108643 -0.09583118 -0.42291799 
    61894 Axis point 0.00000000 129.94286445 45.52854398 
    61895 Rotation angle (degrees) 152.79420692 
    61896 Shift along axis -337.14046055 
    61897  
    61898 
    61899 > fitmap #34.2 inMap #1
    61900 
    61901 Fit molecule fold_20240711_copi_golph3_model_0.cif B (#34.2) to map
    61902 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    61903 average map value = 0.007695, steps = 60 
    61904 shifted from previous position = 0.00222 
    61905 rotated from previous position = 0.0189 degrees 
    61906 atoms outside contour = 834, contour level = 0.0073613 
    61907  
    61908 Position of fold_20240711_copi_golph3_model_0.cif B (#34.2) relative to
    61909 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61910 Matrix rotation and translation 
    61911 0.64456528 0.35676967 0.67620337 226.66616982 
    61912 -0.03015048 -0.87189761 0.48875914 253.32836692 
    61913 0.76395454 -0.33542503 -0.55123816 256.81153638 
    61914 Axis -0.90103727 -0.09593375 -0.42299948 
    61915 Axis point 0.00000000 129.93692500 45.51545932 
    61916 Rotation angle (degrees) 152.78356795 
    61917 Shift along axis -337.16855269 
    61918  
    61919 
    61920 > fitmap #34.2 inMap #1
    61921 
    61922 Fit molecule fold_20240711_copi_golph3_model_0.cif B (#34.2) to map
    61923 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    61924 average map value = 0.007695, steps = 60 
    61925 shifted from previous position = 0.0325 
    61926 rotated from previous position = 0.0426 degrees 
    61927 atoms outside contour = 833, contour level = 0.0073613 
    61928  
    61929 Position of fold_20240711_copi_golph3_model_0.cif B (#34.2) relative to
    61930 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61931 Matrix rotation and translation 
    61932 0.64429202 0.35689581 0.67639720 226.67538323 
    61933 -0.02964787 -0.87211347 0.48840464 253.33933408 
    61934 0.76420469 -0.33472894 -0.55131455 256.81639486 
    61935 Axis -0.90097264 -0.09611094 -0.42309691 
    61936 Axis point 0.00000000 129.89157565 45.54507875 
    61937 Rotation angle (degrees) 152.81901251 
    61938 Shift along axis -337.23522198 
    61939  
    61940 
    61941 > fitmap #34.2 inMap #1
    61942 
    61943 Fit molecule fold_20240711_copi_golph3_model_0.cif B (#34.2) to map
    61944 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    61945 average map value = 0.007695, steps = 60 
    61946 shifted from previous position = 0.0297 
    61947 rotated from previous position = 0.0339 degrees 
    61948 atoms outside contour = 833, contour level = 0.0073613 
    61949  
    61950 Position of fold_20240711_copi_golph3_model_0.cif B (#34.2) relative to
    61951 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61952 Matrix rotation and translation 
    61953 0.64458822 0.35669011 0.67622348 226.67106189 
    61954 -0.03003524 -0.87199842 0.48858637 253.33241227 
    61955 0.76393973 -0.33524755 -0.55136663 256.80741557 
    61956 Axis -0.90104970 -0.09593767 -0.42297210 
    61957 Axis point 0.00000000 129.93127775 45.53111558 
    61958 Rotation angle (degrees) 152.79649635 
    61959 Shift along axis -337.16838500 
    61960  
    61961 
    61962 > fitmap #34.2 inMap #1
    61963 
    61964 Fit molecule fold_20240711_copi_golph3_model_0.cif B (#34.2) to map
    61965 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    61966 average map value = 0.007695, steps = 48 
    61967 shifted from previous position = 0.0372 
    61968 rotated from previous position = 0.0454 degrees 
    61969 atoms outside contour = 833, contour level = 0.0073613 
    61970  
    61971 Position of fold_20240711_copi_golph3_model_0.cif B (#34.2) relative to
    61972 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    61973 Matrix rotation and translation 
    61974 0.64422597 0.35682412 0.67649793 226.68001862 
    61975 -0.02956760 -0.87222125 0.48821701 253.33910120 
    61976 0.76426348 -0.33452450 -0.55135714 256.81707073 
    61977 Axis -0.90095922 -0.09610938 -0.42312583 
    61978 Axis point 0.00000000 129.88181796 45.55489965 
    61979 Rotation angle (degrees) 152.83258813 
    61980 Shift along axis -337.24365378 
    61981  
    61982 
    61983 > hide #34.2 models
    61984 
    61985 > show #34.2 models
    61986 
    61987 > hide #34.2 models
    61988 
    61989 > hide #34.3 models
    61990 
    61991 > show #34.3 models
    61992 
    61993 > fitmap #34.3 inMap #1
    61994 
    61995 Fit molecule fold_20240711_copi_golph3_model_0.cif C (#34.3) to map
    61996 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    61997 average map value = 0.01001, steps = 48 
    61998 shifted from previous position = 0.0376 
    61999 rotated from previous position = 0.0533 degrees 
    62000 atoms outside contour = 623, contour level = 0.0073613 
    62001  
    62002 Position of fold_20240711_copi_golph3_model_0.cif C (#34.3) relative to
    62003 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62004 Matrix rotation and translation 
    62005 -0.54976862 0.35490996 -0.75617021 335.66204339 
    62006 0.52683519 0.84981999 0.01583258 166.86602425 
    62007 0.64822770 -0.38967282 -0.65418342 271.14642081 
    62008 Axis -0.27550830 -0.95417543 0.11680936 
    62009 Axis point 75.48209689 0.00000000 209.03180877 
    62010 Rotation angle (degrees) 132.61479508 
    62011 Shift along axis -220.02469949 
    62012  
    62013 
    62014 > fitmap #34.3 inMap #1
    62015 
    62016 Fit molecule fold_20240711_copi_golph3_model_0.cif C (#34.3) to map
    62017 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    62018 average map value = 0.01001, steps = 48 
    62019 shifted from previous position = 0.0359 
    62020 rotated from previous position = 0.0719 degrees 
    62021 atoms outside contour = 625, contour level = 0.0073613 
    62022  
    62023 Position of fold_20240711_copi_golph3_model_0.cif C (#34.3) relative to
    62024 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62025 Matrix rotation and translation 
    62026 -0.54966200 0.35546795 -0.75598559 335.64620514 
    62027 0.52641333 0.85005967 0.01695742 166.82818569 
    62028 0.64866068 -0.38864005 -0.65436857 271.11571830 
    62029 Axis -0.27554310 -0.95424807 0.11613194 
    62030 Axis point 75.51025450 0.00000000 208.94253072 
    62031 Rotation angle (degrees) 132.60852240 
    62032 Shift along axis -220.19527612 
    62033  
    62034 
    62035 > fitmap #34.3 inMap #1
    62036 
    62037 Fit molecule fold_20240711_copi_golph3_model_0.cif C (#34.3) to map
    62038 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    62039 average map value = 0.01001, steps = 48 
    62040 shifted from previous position = 0.0259 
    62041 rotated from previous position = 0.0904 degrees 
    62042 atoms outside contour = 624, contour level = 0.0073613 
    62043  
    62044 Position of fold_20240711_copi_golph3_model_0.cif C (#34.3) relative to
    62045 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62046 Matrix rotation and translation 
    62047 -0.54960161 0.35507513 -0.75621407 335.66385777 
    62048 0.52722425 0.84958042 0.01573838 166.84432392 
    62049 0.64805298 -0.39004456 -0.65413499 271.19599798 
    62050 Axis -0.27570103 -0.95410091 0.11696324 
    62051 Axis point 75.44482347 0.00000000 209.06469932 
    62052 Rotation angle (degrees) 132.61573417 
    62053 Shift along axis -220.00922798 
    62054  
    62055 
    62056 > hide #34.3 models
    62057 
    62058 > show #34.3 models
    62059 
    62060 > hide #34.3 models
    62061 
    62062 > show #34.2 models
    62063 
    62064 > show #34.3 models
    62065 
    62066 > hide #34.4 models
    62067 
    62068 > show #34.4 models
    62069 
    62070 > combine #34.4
    62071 
    62072 > hide #38 models
    62073 
    62074 > show #38 models
    62075 
    62076 > combine #34.4
    62077 
    62078 > hide #34.4 models
    62079 
    62080 > hide #34.9 models
    62081 
    62082 > hide #34.8 models
    62083 
    62084 > hide #34.7 models
    62085 
    62086 > hide #34.6 models
    62087 
    62088 > hide #34.5 models
    62089 
    62090 > hide #34.3 models
    62091 
    62092 > hide #34.2 models
    62093 
    62094 > hide #39 models
    62095 
    62096 > hide #!34 models
    62097 
    62098 > show #!34 models
    62099 
    62100 > hide #!1 models
    62101 
    62102 > hide #38 models
    62103 
    62104 > show #38 models
    62105 
    62106 > ui mousemode right select
    62107 
    62108 > show #!1 models
    62109 
    62110 > hide #!1 models
    62111 
    62112 Drag select of 119 residues 
    62113 
    62114 > select clear
    62115 
    62116 Drag select of 302 residues 
    62117 
    62118 > select up
    62119 
    62120 2380 atoms, 2423 bonds, 306 residues, 1 model selected 
    62121 
    62122 > delete sel
    62123 
    62124 Drag select of 2 residues 
    62125 
    62126 > delete sel
    62127 
    62128 > select #38/D:592
    62129 
    62130 8 atoms, 7 bonds, 1 residue, 1 model selected 
    62131 
    62132 > delete sel
    62133 
    62134 > show #!1 models
    62135 
    62136 > fitmap #34.3 inMap #1
    62137 
    62138 Fit molecule fold_20240711_copi_golph3_model_0.cif C (#34.3) to map
    62139 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    62140 average map value = 0.01001, steps = 48 
    62141 shifted from previous position = 0.00549 
    62142 rotated from previous position = 0.0119 degrees 
    62143 atoms outside contour = 624, contour level = 0.0073613 
    62144  
    62145 Position of fold_20240711_copi_golph3_model_0.cif C (#34.3) relative to
    62146 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62147 Matrix rotation and translation 
    62148 -0.54954249 0.35524480 -0.75617735 335.65186462 
    62149 0.52738295 0.84948061 0.01580877 166.84331501 
    62150 0.64797398 -0.39010744 -0.65417574 271.20127937 
    62151 Axis -0.27580563 -0.95407086 0.11696174 
    62152 Axis point 75.43022439 0.00000000 209.05503117 
    62153 Rotation angle (degrees) 132.61890471 
    62154 Shift along axis -220.03484367 
    62155  
    62156 
    62157 > fitmap #38 inMap #1
    62158 
    62159 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif D (#38) to map
    62160 relion_locres_filtered_20240326_GT.mrc (#1) using 4763 atoms 
    62161 average map value = 0.008699, steps = 68 
    62162 shifted from previous position = 1.24 
    62163 rotated from previous position = 1.92 degrees 
    62164 atoms outside contour = 2233, contour level = 0.0073613 
    62165  
    62166 Position of copy of fold_20240711_copi_golph3_model_0.cif D (#38) relative to
    62167 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62168 Matrix rotation and translation 
    62169 0.57954569 0.37609347 0.72296646 229.39627935 
    62170 -0.04018189 -0.87287444 0.48628760 258.29327164 
    62171 0.81394853 -0.31087604 -0.49075847 263.86207894 
    62172 Axis -0.88191705 -0.10065517 -0.46053323 
    62173 Axis point -0.00000000 129.97172556 41.82519965 
    62174 Rotation angle (degrees) 153.13118000 
    62175 Shift along axis -349.82429832 
    62176  
    62177 
    62178 > rename #38 20240711_copi_golph3_alpha_M1-T591.cif
    62179 
    62180 > hide #38 models
    62181 
    62182 > show #38 models
    62183 
    62184 > show #39 models
    62185 
    62186 > hide #!1 models
    62187 
    62188 > hide #38 models
    62189 
    62190 Drag select of 244 residues 
    62191 
    62192 > select up
    62193 
    62194 2232 atoms, 2269 bonds, 277 residues, 1 model selected 
    62195 
    62196 > select clear
    62197 
    62198 Drag select of 312 residues 
    62199 Drag select of 574 residues 
    62200 
    62201 > select up
    62202 
    62203 4763 atoms, 4880 bonds, 591 residues, 1 model selected 
    62204 
    62205 > delete sel
    62206 
    62207 > show #!31 models
    62208 
    62209 > hide #!31 models
    62210 
    62211 > show #!1 models
    62212 
    62213 > fitmap #38 inMap #1
    62214 
    62215 Fit molecule 20240711_copi_golph3_alpha_M1-T591.cif (#38) to map
    62216 relion_locres_filtered_20240326_GT.mrc (#1) using 4763 atoms 
    62217 average map value = 0.008699, steps = 28 
    62218 shifted from previous position = 0.0348 
    62219 rotated from previous position = 0.0398 degrees 
    62220 atoms outside contour = 2232, contour level = 0.0073613 
    62221  
    62222 Position of 20240711_copi_golph3_alpha_M1-T591.cif (#38) relative to
    62223 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62224 Matrix rotation and translation 
    62225 0.57899303 0.37617952 0.72336439 229.39426216 
    62226 -0.04035202 -0.87289350 0.48623930 258.30795598 
    62227 0.81433334 -0.31071838 -0.49021965 263.89271024 
    62228 Axis -0.88175253 -0.10064788 -0.46084974 
    62229 Axis point 0.00000000 129.96471515 41.78394361 
    62230 Rotation angle (degrees) 153.13326520 
    62231 Shift along axis -349.88200523 
    62232  
    62233 
    62234 > fitmap #39 inMap #1
    62235 
    62236 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif D (#39) to map
    62237 relion_locres_filtered_20240326_GT.mrc (#1) using 2403 atoms 
    62238 average map value = 0.007323, steps = 68 
    62239 shifted from previous position = 2.94 
    62240 rotated from previous position = 3.87 degrees 
    62241 atoms outside contour = 1477, contour level = 0.0073613 
    62242  
    62243 Position of copy of fold_20240711_copi_golph3_model_0.cif D (#39) relative to
    62244 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62245 Matrix rotation and translation 
    62246 0.58533449 0.32440303 0.74306541 225.71515771 
    62247 -0.13492540 -0.86471675 0.48379755 254.86013275 
    62248 0.79948650 -0.38344179 -0.46237833 264.73941481 
    62249 Axis -0.88224604 -0.05739740 -0.46727664 
    62250 Axis point 0.00000000 136.02553898 37.53416349 
    62251 Rotation angle (degrees) 150.56109739 
    62252 Shift along axis -337.47115908 
    62253  
    62254 
    62255 > fitmap #39 inMap #1
    62256 
    62257 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif D (#39) to map
    62258 relion_locres_filtered_20240326_GT.mrc (#1) using 2403 atoms 
    62259 average map value = 0.007323, steps = 44 
    62260 shifted from previous position = 0.017 
    62261 rotated from previous position = 0.048 degrees 
    62262 atoms outside contour = 1476, contour level = 0.0073613 
    62263  
    62264 Position of copy of fold_20240711_copi_golph3_model_0.cif D (#39) relative to
    62265 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62266 Matrix rotation and translation 
    62267 0.58552841 0.32361096 0.74325799 225.72064463 
    62268 -0.13536426 -0.86496102 0.48323798 254.83332258 
    62269 0.79927029 -0.38356014 -0.46265389 264.72247172 
    62270 Axis -0.88231571 -0.05701505 -0.46719189 
    62271 Axis point 0.00000000 136.05872535 37.55009384 
    62272 Rotation angle (degrees) 150.58009941 
    62273 Shift along axis -337.36239934 
    62274  
    62275 
    62276 > hide #!1 models
    62277 
    62278 > rename #39 20240711_copi_golph3_alpha_I592-G900.cif
    62279 
    62280 > hide #39 models
    62281 
    62282 > show #34.6 models
    62283 
    62284 > show #!1 models
    62285 
    62286 > fitmap #34.6 inMap #1
    62287 
    62288 Fit molecule fold_20240711_copi_golph3_model_0.cif F (#34.6) to map
    62289 relion_locres_filtered_20240326_GT.mrc (#1) using 7214 atoms 
    62290 average map value = 0.008416, steps = 108 
    62291 shifted from previous position = 0.0102 
    62292 rotated from previous position = 0.00668 degrees 
    62293 atoms outside contour = 3515, contour level = 0.0073613 
    62294  
    62295 Position of fold_20240711_copi_golph3_model_0.cif F (#34.6) relative to
    62296 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62297 Matrix rotation and translation 
    62298 0.58320062 0.35669686 0.72982490 229.42488060 
    62299 -0.01510074 -0.89352030 0.44876880 249.27477617 
    62300 0.81218779 -0.27274314 -0.51571521 258.76540818 
    62301 Axis -0.88437810 -0.10095458 -0.45572310 
    62302 Axis point 0.00000000 123.72961750 44.43035142 
    62303 Rotation angle (degrees) 155.92572855 
    62304 Shift along axis -345.98914492 
    62305  
    62306 
    62307 > hide #34.6 models
    62308 
    62309 > show #34.6 models
    62310 
    62311 > hide #!34 models
    62312 
    62313 > combine #34.6
    62314 
    62315 [Repeated 1 time(s)]
    62316 
    62317 > hide #34.6 models
    62318 
    62319 > hide #42 models
    62320 
    62321 > hide #!1 models
    62322 
    62323 Drag select of 111 residues 
    62324 
    62325 > select clear
    62326 
    62327 Drag select of 253 residues 
    62328 
    62329 > select up
    62330 
    62331 1997 atoms, 2033 bonds, 254 residues, 1 model selected 
    62332 
    62333 > delete sel
    62334 
    62335 Drag select of 64 residues 
    62336 
    62337 > delete sel
    62338 
    62339 > select #41/F:587
    62340 
    62341 8 atoms, 7 bonds, 1 residue, 1 model selected 
    62342 
    62343 > delete sel
    62344 
    62345 > show #!1 models
    62346 
    62347 > fitmap #41 inMap #1
    62348 
    62349 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif F (#41) to map
    62350 relion_locres_filtered_20240326_GT.mrc (#1) using 4686 atoms 
    62351 average map value = 0.01004, steps = 64 
    62352 shifted from previous position = 0.573 
    62353 rotated from previous position = 1.59 degrees 
    62354 atoms outside contour = 1755, contour level = 0.0073613 
    62355  
    62356 Position of copy of fold_20240711_copi_golph3_model_0.cif F (#41) relative to
    62357 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62358 Matrix rotation and translation 
    62359 0.59294693 0.33291104 0.73320132 230.49160519 
    62360 -0.03655337 -0.89846921 0.43751220 249.48414209 
    62361 0.80441146 -0.28622249 -0.52057554 258.88679735 
    62362 Axis -0.88725580 -0.08729940 -0.45294144 
    62363 Axis point 0.00000000 125.81112779 44.24040475 
    62364 Rotation angle (degrees) 155.93014878 
    62365 Shift along axis -343.54539036 
    62366  
    62367 
    62368 > fitmap #41 inMap #1
    62369 
    62370 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif F (#41) to map
    62371 relion_locres_filtered_20240326_GT.mrc (#1) using 4686 atoms 
    62372 average map value = 0.01004, steps = 28 
    62373 shifted from previous position = 0.0225 
    62374 rotated from previous position = 0.0138 degrees 
    62375 atoms outside contour = 1751, contour level = 0.0073613 
    62376  
    62377 Position of copy of fold_20240711_copi_golph3_model_0.cif F (#41) relative to
    62378 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62379 Matrix rotation and translation 
    62380 0.59310238 0.33298355 0.73304264 230.46604751 
    62381 -0.03651740 -0.89840571 0.43764559 249.47016786 
    62382 0.80429848 -0.28633746 -0.52068687 258.88830934 
    62383 Axis -0.88729822 -0.08732963 -0.45285251 
    62384 Axis point 0.00000000 125.81086103 44.25740174 
    62385 Rotation angle (degrees) 155.92258977 
    62386 Shift along axis -343.51647395 
    62387  
    62388 
    62389 > hide #!1 models
    62390 
    62391 > rename #41 20240711_copi_golph3_betaprime_M1-S586.cif
    62392 
    62393 > fitmap #41 inMap #1
    62394 
    62395 Fit molecule 20240711_copi_golph3_betaprime_M1-S586.cif (#41) to map
    62396 relion_locres_filtered_20240326_GT.mrc (#1) using 4686 atoms 
    62397 average map value = 0.01004, steps = 44 
    62398 shifted from previous position = 0.008 
    62399 rotated from previous position = 0.00435 degrees 
    62400 atoms outside contour = 1755, contour level = 0.0073613 
    62401  
    62402 Position of 20240711_copi_golph3_betaprime_M1-S586.cif (#41) relative to
    62403 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62404 Matrix rotation and translation 
    62405 0.59312402 0.33303985 0.73299956 230.45895672 
    62406 -0.03648900 -0.89837760 0.43770565 249.47227469 
    62407 0.80428381 -0.28636016 -0.52069705 258.89564102 
    62408 Axis -0.88730336 -0.08735498 -0.45283756 
    62409 Axis point 0.00000000 125.81189319 44.26297894 
    62410 Rotation angle (degrees) 155.91981153 
    62411 Shift along axis -343.51732333 
    62412  
    62413 
    62414 > hide #41 models
    62415 
    62416 > show #42 models
    62417 
    62418 Drag select of 251 residues 
    62419 
    62420 > select up
    62421 
    62422 2195 atoms, 2246 bonds, 274 residues, 1 model selected 
    62423 
    62424 > delete sel
    62425 
    62426 Drag select of 125 residues, 4 pseudobonds 
    62427 Drag select of 222 residues, 4 pseudobonds 
    62428 
    62429 > select up
    62430 
    62431 2116 atoms, 2152 bonds, 4 pseudobonds, 264 residues, 2 models selected 
    62432 
    62433 > delete sel
    62434 
    62435 Drag select of 26 residues, 3 pseudobonds 
    62436 
    62437 > delete sel
    62438 
    62439 Drag select of 14 residues, 2 pseudobonds 
    62440 
    62441 > delete sel
    62442 
    62443 Drag select of 2 residues, 1 pseudobonds 
    62444 
    62445 > delete sel
    62446 
    62447 Drag select of 5 residues, 2 pseudobonds 
    62448 
    62449 > select up
    62450 
    62451 48 atoms, 47 bonds, 2 pseudobonds, 6 residues, 2 models selected 
    62452 
    62453 > delete sel
    62454 
    62455 Undo failed, probably because structures have been modified. 
    62456 
    62457 > close #42
    62458 
    62459 > combine #34.6
    62460 
    62461 Drag select of 302 residues 
    62462 
    62463 > delete sel
    62464 
    62465 Drag select of 270 residues 
    62466 
    62467 > select up
    62468 
    62469 2254 atoms, 2303 bonds, 282 residues, 1 model selected 
    62470 Drag select of 285 residues 
    62471 
    62472 > select clear
    62473 
    62474 Drag select of 285 residues 
    62475 
    62476 > select clear
    62477 
    62478 Drag select of 283 residues 
    62479 
    62480 > select up
    62481 
    62482 2262 atoms, 2312 bonds, 284 residues, 1 model selected 
    62483 
    62484 > delete sel
    62485 
    62486 > fitmap #42 inMap #1
    62487 
    62488 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif F (#42) to map
    62489 relion_locres_filtered_20240326_GT.mrc (#1) using 2528 atoms 
    62490 average map value = 0.007568, steps = 84 
    62491 shifted from previous position = 5.8 
    62492 rotated from previous position = 6.74 degrees 
    62493 atoms outside contour = 1450, contour level = 0.0073613 
    62494  
    62495 Position of copy of fold_20240711_copi_golph3_model_0.cif F (#42) relative to
    62496 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62497 Matrix rotation and translation 
    62498 0.59124018 0.34103418 0.73084249 226.71930924 
    62499 -0.11694607 -0.86036468 0.49608088 254.82904919 
    62500 0.79797160 -0.37877210 -0.46879956 265.13169213 
    62501 Axis -0.88390636 -0.06782379 -0.46271965 
    62502 Axis point 0.00000000 134.83865586 38.51143168 
    62503 Rotation angle (degrees) 150.33824374 
    62504 Shift along axis -340.36375630 
    62505  
    62506 
    62507 > show #!1 models
    62508 
    62509 > show #39 models
    62510 
    62511 > hide #42 models
    62512 
    62513 > hide #39 models
    62514 
    62515 > rename #42 "20240711_copi_golph3_betaprime_L587-D905.cif F"
    62516 
    62517 > rename #42 20240711_copi_golph3_betaprime_L587-D905.cif
    62518 
    62519 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    62520 > dataset/Chimera sessions/20240715_leaf_fitting_AF3_only.cxs"
    62521 
    62522 > show #34.5 models
    62523 
    62524 > combine #34.5
    62525 
    62526 [Repeated 1 time(s)]
    62527 
    62528 > hide #34.5 models
    62529 
    62530 > fitmap #43 inMap #1
    62531 
    62532 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#43) to map
    62533 relion_locres_filtered_20240326_GT.mrc (#1) using 7501 atoms 
    62534 average map value = 0.008391, steps = 60 
    62535 shifted from previous position = 0.0202 
    62536 rotated from previous position = 0.0157 degrees 
    62537 atoms outside contour = 4035, contour level = 0.0073613 
    62538  
    62539 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#43) relative to
    62540 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62541 Matrix rotation and translation 
    62542 0.58728190 0.35087602 0.72937370 227.26547074 
    62543 -0.08402593 -0.86984861 0.48611011 251.91658958 
    62544 0.80500908 -0.34676997 -0.48136366 262.66211508 
    62545 Axis -0.88357135 -0.08023875 -0.46137123 
    62546 Axis point 0.00000000 130.48829569 40.18584814 
    62547 Rotation angle (degrees) 151.88033864 
    62548 Shift along axis -342.20347384 
    62549  
    62550 
    62551 > fitmap #44 inMap #1
    62552 
    62553 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    62554 relion_locres_filtered_20240326_GT.mrc (#1) using 7501 atoms 
    62555 average map value = 0.008391, steps = 60 
    62556 shifted from previous position = 0.0202 
    62557 rotated from previous position = 0.0157 degrees 
    62558 atoms outside contour = 4035, contour level = 0.0073613 
    62559  
    62560 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    62561 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62562 Matrix rotation and translation 
    62563 0.58728190 0.35087602 0.72937370 227.26547074 
    62564 -0.08402593 -0.86984861 0.48611011 251.91658958 
    62565 0.80500908 -0.34676997 -0.48136366 262.66211508 
    62566 Axis -0.88357135 -0.08023875 -0.46137123 
    62567 Axis point 0.00000000 130.48829569 40.18584814 
    62568 Rotation angle (degrees) 151.88033864 
    62569 Shift along axis -342.20347384 
    62570  
    62571 
    62572 > fitmap #44 inMap #1
    62573 
    62574 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    62575 relion_locres_filtered_20240326_GT.mrc (#1) using 7501 atoms 
    62576 average map value = 0.008391, steps = 80 
    62577 shifted from previous position = 0.0251 
    62578 rotated from previous position = 0.0158 degrees 
    62579 atoms outside contour = 4039, contour level = 0.0073613 
    62580  
    62581 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    62582 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62583 Matrix rotation and translation 
    62584 0.58724649 0.35080437 0.72943667 227.28192342 
    62585 -0.08428861 -0.86979335 0.48616351 251.91497901 
    62586 0.80500745 -0.34698102 -0.48121428 262.64428639 
    62587 Axis -0.88355512 -0.08014329 -0.46141889 
    62588 Axis point 0.00000000 130.50051036 40.14821271 
    62589 Rotation angle (degrees) 151.87005385 
    62590 Shift along axis -342.19444001 
    62591  
    62592 
    62593 > hide #!1 models
    62594 
    62595 > hide #44 models
    62596 
    62597 > show #!1 models
    62598 
    62599 > hide #!1 models
    62600 
    62601 > show #!1 models
    62602 
    62603 > hide #!1 models
    62604 
    62605 Drag select of 121 residues 
    62606 
    62607 > select up
    62608 
    62609 1052 atoms, 1068 bonds, 132 residues, 1 model selected 
    62610 
    62611 > delete sel
    62612 
    62613 Drag select of 88 residues, 1 pseudobonds 
    62614 
    62615 > delete sel
    62616 
    62617 > fitmap #43 inMap #1
    62618 
    62619 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#43) to map
    62620 relion_locres_filtered_20240326_GT.mrc (#1) using 5728 atoms 
    62621 average map value = 0.008372, steps = 76 
    62622 shifted from previous position = 1.66 
    62623 rotated from previous position = 2.84 degrees 
    62624 atoms outside contour = 2966, contour level = 0.0073613 
    62625  
    62626 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#43) relative to
    62627 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62628 Matrix rotation and translation 
    62629 0.57378754 0.34816301 0.74131665 228.20919476 
    62630 -0.12686471 -0.85643528 0.50042378 253.80233981 
    62631 0.80911878 -0.38118385 -0.44724229 263.79645345 
    62632 Axis -0.87832859 -0.06754995 -0.47326091 
    62633 Axis point 0.00000000 133.71094787 35.07949807 
    62634 Rotation angle (degrees) 149.87642729 
    62635 Shift along axis -342.43154616 
    62636  
    62637 
    62638 > show #!1 models
    62639 
    62640 > fitmap #43 inMap #1
    62641 
    62642 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#43) to map
    62643 relion_locres_filtered_20240326_GT.mrc (#1) using 5728 atoms 
    62644 average map value = 0.008372, steps = 76 
    62645 shifted from previous position = 1.66 
    62646 rotated from previous position = 2.84 degrees 
    62647 atoms outside contour = 2966, contour level = 0.0073613 
    62648  
    62649 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#43) relative to
    62650 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62651 Matrix rotation and translation 
    62652 0.57378754 0.34816301 0.74131665 228.20919476 
    62653 -0.12686471 -0.85643528 0.50042378 253.80233981 
    62654 0.80911878 -0.38118385 -0.44724229 263.79645345 
    62655 Axis -0.87832859 -0.06754995 -0.47326091 
    62656 Axis point 0.00000000 133.71094787 35.07949807 
    62657 Rotation angle (degrees) 149.87642729 
    62658 Shift along axis -342.43154616 
    62659  
    62660 
    62661 > fitmap #43 inMap #1
    62662 
    62663 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#43) to map
    62664 relion_locres_filtered_20240326_GT.mrc (#1) using 5728 atoms 
    62665 average map value = 0.008372, steps = 76 
    62666 shifted from previous position = 1.66 
    62667 rotated from previous position = 2.84 degrees 
    62668 atoms outside contour = 2966, contour level = 0.0073613 
    62669  
    62670 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#43) relative to
    62671 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62672 Matrix rotation and translation 
    62673 0.57378754 0.34816301 0.74131665 228.20919476 
    62674 -0.12686471 -0.85643528 0.50042378 253.80233981 
    62675 0.80911878 -0.38118385 -0.44724229 263.79645345 
    62676 Axis -0.87832859 -0.06754995 -0.47326091 
    62677 Axis point 0.00000000 133.71094787 35.07949807 
    62678 Rotation angle (degrees) 149.87642729 
    62679 Shift along axis -342.43154616 
    62680  
    62681 
    62682 > hide #!1 models
    62683 
    62684 Drag select of 28 residues 
    62685 
    62686 > select up
    62687 
    62688 283 atoms, 287 bonds, 34 residues, 1 model selected 
    62689 
    62690 > delete sel
    62691 
    62692 Drag select of 63 residues 
    62693 
    62694 > select up
    62695 
    62696 676 atoms, 679 bonds, 88 residues, 1 model selected 
    62697 
    62698 > delete sel
    62699 
    62700 Drag select of 9 residues, 1 pseudobonds 
    62701 
    62702 > select up
    62703 
    62704 278 atoms, 279 bonds, 1 pseudobond, 34 residues, 2 models selected 
    62705 Drag select of 59 residues, 2 pseudobonds 
    62706 
    62707 > select up
    62708 
    62709 678 atoms, 684 bonds, 2 pseudobonds, 85 residues, 2 models selected 
    62710 
    62711 > delete sel
    62712 
    62713 Drag select of 3 residues 
    62714 
    62715 > delete sel
    62716 
    62717 > show #!1 models
    62718 
    62719 > fitmap #43 inMap #1
    62720 
    62721 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#43) to map
    62722 relion_locres_filtered_20240326_GT.mrc (#1) using 4069 atoms 
    62723 average map value = 0.008155, steps = 68 
    62724 shifted from previous position = 1.4 
    62725 rotated from previous position = 0.816 degrees 
    62726 atoms outside contour = 2109, contour level = 0.0073613 
    62727  
    62728 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#43) relative to
    62729 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62730 Matrix rotation and translation 
    62731 0.57410381 0.34312327 0.74341861 228.36549375 
    62732 -0.14054360 -0.85318371 0.50231968 255.37589611 
    62733 0.80663022 -0.39286637 -0.44159224 264.01600817 
    62734 Axis -0.87810302 -0.06200532 -0.47443695 
    62735 Axis point 0.00000000 135.52919165 33.77725227 
    62736 Rotation angle (degrees) 149.35433730 
    62737 Shift along axis -341.62204503 
    62738  
    62739 
    62740 > show #34.5 models
    62741 
    62742 > hide #34.5 models
    62743 
    62744 > show #34.5 models
    62745 
    62746 > hide #34.5 models
    62747 
    62748 > show #34.5 models
    62749 
    62750 > hide #34.5 models
    62751 
    62752 > show #!16 models
    62753 
    62754 > hide #!16 models
    62755 
    62756 > show #!16 models
    62757 
    62758 > hide #!16 models
    62759 
    62760 > show #44 models
    62761 
    62762 > hide #!43 models
    62763 
    62764 > hide #44 models
    62765 
    62766 > show #!43 models
    62767 
    62768 > hide #!1 models
    62769 
    62770 Drag select of 211 residues 
    62771 
    62772 > select up
    62773 
    62774 1801 atoms, 1824 bonds, 229 residues, 1 model selected 
    62775 
    62776 > delete sel
    62777 
    62778 > show #!1 models
    62779 
    62780 > fitmap #43 inMap #1
    62781 
    62782 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#43) to map
    62783 relion_locres_filtered_20240326_GT.mrc (#1) using 2268 atoms 
    62784 average map value = 0.008066, steps = 88 
    62785 shifted from previous position = 0.913 
    62786 rotated from previous position = 3.83 degrees 
    62787 atoms outside contour = 1095, contour level = 0.0073613 
    62788  
    62789 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#43) relative to
    62790 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62791 Matrix rotation and translation 
    62792 0.54911717 0.39741492 0.73520862 228.50766833 
    62793 -0.09014896 -0.84640556 0.52485312 256.86574974 
    62794 0.83086912 -0.35448415 -0.42894929 265.00653117 
    62795 Axis -0.87062947 -0.09471321 -0.48273568 
    62796 Axis point 0.00000000 130.86457817 34.34641142 
    62797 Rotation angle (degrees) 149.66859034 
    62798 Shift along axis -351.20219705 
    62799  
    62800 
    62801 > hide #!1 models
    62802 
    62803 Drag select of 51 residues 
    62804 
    62805 > delete sel
    62806 
    62807 > show #!1 models
    62808 
    62809 > fitmap #43 inMap #1
    62810 
    62811 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#43) to map
    62812 relion_locres_filtered_20240326_GT.mrc (#1) using 1872 atoms 
    62813 average map value = 0.008979, steps = 52 
    62814 shifted from previous position = 0.229 
    62815 rotated from previous position = 2.06 degrees 
    62816 atoms outside contour = 765, contour level = 0.0073613 
    62817  
    62818 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#43) relative to
    62819 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62820 Matrix rotation and translation 
    62821 0.55235724 0.42748288 0.71565345 229.23148406 
    62822 -0.07113425 -0.83119930 0.55140515 257.71360793 
    62823 0.83056691 -0.35548010 -0.42871028 265.08311295 
    62824 Axis -0.87093274 -0.11035784 -0.47884999 
    62825 Axis point 0.00000000 129.66425331 34.28845360 
    62826 Rotation angle (degrees) 148.62479341 
    62827 Shift along axis -355.02096685 
    62828  
    62829 
    62830 > fitmap #43 inMap #1
    62831 
    62832 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#43) to map
    62833 relion_locres_filtered_20240326_GT.mrc (#1) using 1872 atoms 
    62834 average map value = 0.008979, steps = 48 
    62835 shifted from previous position = 0.00726 
    62836 rotated from previous position = 0.0577 degrees 
    62837 atoms outside contour = 758, contour level = 0.0073613 
    62838  
    62839 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#43) relative to
    62840 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62841 Matrix rotation and translation 
    62842 0.55317939 0.42734298 0.71510178 229.23855785 
    62843 -0.07089502 -0.83113817 0.55152810 257.71998380 
    62844 0.83004004 -0.35579113 -0.42947201 265.06819269 
    62845 Axis -0.87118278 -0.11036053 -0.47839432 
    62846 Axis point 0.00000000 129.69838305 34.35730714 
    62847 Rotation angle (degrees) 148.61810567 
    62848 Shift along axis -354.95791509 
    62849  
    62850 
    62851 > hide #!1 models
    62852 
    62853 > show #!1 models
    62854 
    62855 > fitmap #43 inMap #1
    62856 
    62857 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#43) to map
    62858 relion_locres_filtered_20240326_GT.mrc (#1) using 1872 atoms 
    62859 average map value = 0.008979, steps = 60 
    62860 shifted from previous position = 0.0302 
    62861 rotated from previous position = 0.0163 degrees 
    62862 atoms outside contour = 756, contour level = 0.0073613 
    62863  
    62864 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#43) relative to
    62865 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62866 Matrix rotation and translation 
    62867 0.55302467 0.42752497 0.71511266 229.26901259 
    62868 -0.07069298 -0.83113550 0.55155805 257.73333941 
    62869 0.83016035 -0.35557865 -0.42941543 265.07013834 
    62870 Axis -0.87113844 -0.11048221 -0.47844697 
    62871 Axis point 0.00000000 129.67681632 34.35014664 
    62872 Rotation angle (degrees) 148.62335798 
    62873 Shift along axis -355.02200355 
    62874  
    62875 
    62876 > fitmap #43 inMap #1
    62877 
    62878 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#43) to map
    62879 relion_locres_filtered_20240326_GT.mrc (#1) using 1872 atoms 
    62880 average map value = 0.008979, steps = 44 
    62881 shifted from previous position = 0.00905 
    62882 rotated from previous position = 0.0364 degrees 
    62883 atoms outside contour = 761, contour level = 0.0073613 
    62884  
    62885 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#43) relative to
    62886 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    62887 Matrix rotation and translation 
    62888 0.55251064 0.42761388 0.71545675 229.26676177 
    62889 -0.07087587 -0.83115833 0.55150017 257.73181508 
    62890 0.83048697 -0.35541834 -0.42891632 265.07188309 
    62891 Axis -0.87098068 -0.11047200 -0.47873645 
    62892 Axis point 0.00000000 129.65750307 34.29851952 
    62893 Rotation angle (degrees) 148.62543510 
    62894 Shift along axis -355.05864186 
    62895  
    62896 
    62897 > hide #!43 models
    62898 
    62899 > show #44 models
    62900 
    62901 > hide #!1 models
    62902 
    62903 Drag select of 123 residues 
    62904 
    62905 > select up
    62906 
    62907 1033 atoms, 1050 bonds, 133 residues, 1 model selected 
    62908 
    62909 > delete sel
    62910 
    62911 Drag select of 107 residues, 1 pseudobonds 
    62912 
    62913 > select up
    62914 
    62915 934 atoms, 947 bonds, 1 pseudobond, 123 residues, 2 models selected 
    62916 
    62917 > select clear
    62918 
    62919 Drag select of 107 residues, 1 pseudobonds 
    62920 
    62921 > select up
    62922 
    62923 934 atoms, 947 bonds, 1 pseudobond, 123 residues, 2 models selected 
    62924 
    62925 > select clear
    62926 
    62927 Drag select of 108 residues, 1 pseudobonds 
    62928 
    62929 > select up
    62930 
    62931 934 atoms, 947 bonds, 1 pseudobond, 123 residues, 2 models selected 
    62932 
    62933 > select down
    62934 
    62935 823 atoms, 1 pseudobond, 108 residues, 2 models selected 
    62936 
    62937 > select clear
    62938 
    62939 Drag select of 111 residues, 1 pseudobonds 
    62940 
    62941 > select clear
    62942 
    62943 Drag select of 106 residues, 1 pseudobonds 
    62944 
    62945 > select up
    62946 
    62947 6468 atoms, 6566 bonds, 1 pseudobond, 820 residues, 2 models selected 
    62948 
    62949 > select down
    62950 
    62951 804 atoms, 1 pseudobond, 106 residues, 2 models selected 
    62952 
    62953 > select clear
    62954 
    62955 Drag select of 108 residues, 1 pseudobonds 
    62956 
    62957 > select clear
    62958 
    62959 Drag select of 2 residues 
    62960 
    62961 > select clear
    62962 
    62963 > select #44/E:710
    62964 
    62965 5 atoms, 4 bonds, 1 residue, 1 model selected 
    62966 
    62967 > select #44/E:710
    62968 
    62969 5 atoms, 4 bonds, 1 residue, 1 model selected 
    62970 
    62971 > select clear
    62972 
    62973 > select #44/E:711
    62974 
    62975 6 atoms, 5 bonds, 1 residue, 1 model selected 
    62976 
    62977 > select #44/E:735
    62978 
    62979 8 atoms, 7 bonds, 1 residue, 1 model selected 
    62980 
    62981 > select #44/E:736
    62982 
    62983 9 atoms, 8 bonds, 1 residue, 1 model selected 
    62984 
    62985 > select clear
    62986 
    62987 Drag select of 109 residues, 1 pseudobonds 
    62988 
    62989 > delete sel
    62990 
    62991 > select clear
    62992 
    62993 > select #44/E:711
    62994 
    62995 6 atoms, 5 bonds, 1 residue, 1 model selected 
    62996 
    62997 > select clear
    62998 
    62999 > select #44/E:711
    63000 
    63001 6 atoms, 5 bonds, 1 residue, 1 model selected 
    63002 
    63003 > show #!43 models
    63004 
    63005 > select #43/E:711
    63006 
    63007 6 atoms, 5 bonds, 1 residue, 1 model selected 
    63008 
    63009 > select #44/E:455
    63010 
    63011 12 atoms, 12 bonds, 1 residue, 1 model selected 
    63012 
    63013 > select clear
    63014 
    63015 > select #44/E:710
    63016 
    63017 5 atoms, 4 bonds, 1 residue, 1 model selected 
    63018 
    63019 > select #44/E:455
    63020 
    63021 12 atoms, 12 bonds, 1 residue, 1 model selected 
    63022 
    63023 > select #44/E:711
    63024 
    63025 6 atoms, 5 bonds, 1 residue, 1 model selected 
    63026 
    63027 > delete sel
    63028 
    63029 > hide #!43 models
    63030 
    63031 > show #!1 models
    63032 
    63033 > fitmap #44 inMap #1
    63034 
    63035 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63036 relion_locres_filtered_20240326_GT.mrc (#1) using 5629 atoms 
    63037 average map value = 0.009299, steps = 68 
    63038 shifted from previous position = 0.65 
    63039 rotated from previous position = 1.89 degrees 
    63040 atoms outside contour = 2810, contour level = 0.0073613 
    63041  
    63042 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63043 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63044 Matrix rotation and translation 
    63045 0.59210262 0.37757492 0.71193516 226.72867709 
    63046 -0.07064798 -0.85572262 0.51258917 251.65532078 
    63047 0.80275983 -0.35380217 -0.48000071 262.28033527 
    63048 Axis -0.88435515 -0.09270784 -0.45751637 
    63049 Axis point 0.00000000 129.47464566 39.97365136 
    63050 Rotation angle (degrees) 150.66970068 
    63051 Shift along axis -343.83664119 
    63052  
    63053 
    63054 > hide #!1 models
    63055 
    63056 > show #!1 models
    63057 
    63058 > hide #!1 models
    63059 
    63060 Drag select of 168 residues 
    63061 
    63062 > select up
    63063 
    63064 1391 atoms, 1419 bonds, 172 residues, 1 model selected 
    63065 
    63066 > delete sel
    63067 
    63068 > show #!1 models
    63069 
    63070 > fitmap #44 inMap #1
    63071 
    63072 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63073 relion_locres_filtered_20240326_GT.mrc (#1) using 4238 atoms 
    63074 average map value = 0.00908, steps = 52 
    63075 shifted from previous position = 0.889 
    63076 rotated from previous position = 0.581 degrees 
    63077 atoms outside contour = 2177, contour level = 0.0073613 
    63078  
    63079 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63080 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63081 Matrix rotation and translation 
    63082 0.59156554 0.37098251 0.71583670 226.98938097 
    63083 -0.08051789 -0.85623010 0.51028118 251.70697815 
    63084 0.80222633 -0.35950243 -0.47664549 263.22862441 
    63085 Axis -0.88411669 -0.08781323 -0.45894064 
    63086 Axis point 0.00000000 130.27549443 39.75547073 
    63087 Rotation angle (degrees) 150.53484706 
    63088 Shift along axis -343.59461614 
    63089  
    63090 
    63091 > fitmap #44 inMap #1
    63092 
    63093 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63094 relion_locres_filtered_20240326_GT.mrc (#1) using 4238 atoms 
    63095 average map value = 0.00908, steps = 64 
    63096 shifted from previous position = 0.0343 
    63097 rotated from previous position = 0.0182 degrees 
    63098 atoms outside contour = 2174, contour level = 0.0073613 
    63099  
    63100 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63101 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63102 Matrix rotation and translation 
    63103 0.59182015 0.37092770 0.71565463 226.99041357 
    63104 -0.08049239 -0.85619924 0.51033699 251.73479534 
    63105 0.80204107 -0.35963246 -0.47685911 263.24852963 
    63106 Axis -0.88419130 -0.08779865 -0.45879969 
    63107 Axis point 0.00000000 130.30411815 39.78107646 
    63108 Rotation angle (degrees) 150.53066235 
    63109 Shift along axis -343.58326437 
    63110  
    63111 
    63112 > hide #!1 models
    63113 
    63114 Drag select of 47 residues 
    63115 
    63116 > select up
    63117 
    63118 382 atoms, 388 bonds, 48 residues, 1 model selected 
    63119 
    63120 > delete sel
    63121 
    63122 > show #!1 models
    63123 
    63124 > fitmap #44 inMap #1
    63125 
    63126 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63127 relion_locres_filtered_20240326_GT.mrc (#1) using 3856 atoms 
    63128 average map value = 0.009018, steps = 48 
    63129 shifted from previous position = 0.371 
    63130 rotated from previous position = 0.406 degrees 
    63131 atoms outside contour = 1995, contour level = 0.0073613 
    63132  
    63133 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63134 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63135 Matrix rotation and translation 
    63136 0.58961576 0.36849782 0.71872291 227.35977820 
    63137 -0.08716202 -0.85562984 0.51019639 252.02457887 
    63138 0.80296702 -0.36346517 -0.47237383 263.49807121 
    63139 Axis -0.88342999 -0.08518605 -0.46075458 
    63140 Axis point 0.00000000 130.78947771 39.10958282 
    63141 Rotation angle (degrees) 150.36510653 
    63142 Shift along axis -343.73336977 
    63143  
    63144 
    63145 > fitmap #44 inMap #1
    63146 
    63147 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63148 relion_locres_filtered_20240326_GT.mrc (#1) using 3856 atoms 
    63149 average map value = 0.009019, steps = 48 
    63150 shifted from previous position = 0.0432 
    63151 rotated from previous position = 0.0409 degrees 
    63152 atoms outside contour = 1998, contour level = 0.0073613 
    63153  
    63154 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63155 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63156 Matrix rotation and translation 
    63157 0.58981753 0.36878021 0.71841245 227.31394980 
    63158 -0.08648174 -0.85567229 0.51024096 251.99800272 
    63159 0.80289239 -0.36307862 -0.47279776 263.47390004 
    63160 Axis -0.88349987 -0.08546473 -0.46056894 
    63161 Axis point 0.00000000 130.74073406 39.17680080 
    63162 Rotation angle (degrees) 150.38044106 
    63163 Shift along axis -343.71668325 
    63164  
    63165 
    63166 > fitmap #44 inMap #1
    63167 
    63168 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63169 relion_locres_filtered_20240326_GT.mrc (#1) using 3856 atoms 
    63170 average map value = 0.009018, steps = 28 
    63171 shifted from previous position = 0.0289 
    63172 rotated from previous position = 0.0173 degrees 
    63173 atoms outside contour = 1995, contour level = 0.0073613 
    63174  
    63175 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63176 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63177 Matrix rotation and translation 
    63178 0.58978570 0.36861431 0.71852371 227.34342395 
    63179 -0.08678141 -0.85566478 0.51020268 252.00086481 
    63180 0.80288344 -0.36326474 -0.47266998 263.48577416 
    63181 Axis -0.88348680 -0.08532741 -0.46061948 
    63182 Axis point 0.00000000 130.76047116 39.15273292 
    63183 Rotation angle (degrees) 150.37444458 
    63184 Shift along axis -343.72417541 
    63185  
    63186 
    63187 > hide #!1 models
    63188 
    63189 Drag select of 8 residues 
    63190 
    63191 > select up
    63192 
    63193 137 atoms, 138 bonds, 17 residues, 1 model selected 
    63194 
    63195 > delete sel
    63196 
    63197 > show #!1 models
    63198 
    63199 > fitmap #44 inMap #1
    63200 
    63201 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63202 relion_locres_filtered_20240326_GT.mrc (#1) using 3719 atoms 
    63203 average map value = 0.008983, steps = 40 
    63204 shifted from previous position = 0.186 
    63205 rotated from previous position = 0.311 degrees 
    63206 atoms outside contour = 1911, contour level = 0.0073613 
    63207  
    63208 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63209 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63210 Matrix rotation and translation 
    63211 0.58940097 0.36876303 0.71876305 227.50271713 
    63212 -0.09114214 -0.85369825 0.51273034 252.22456685 
    63213 0.80268276 -0.36771336 -0.46956073 263.59943137 
    63214 Axis -0.88321410 -0.08418377 -0.46135231 
    63215 Axis point 0.00000000 131.13925552 38.63367265 
    63216 Rotation angle (degrees) 150.10370783 
    63217 Shift along axis -343.77902715 
    63218  
    63219 
    63220 > fitmap #44 inMap #1
    63221 
    63222 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63223 relion_locres_filtered_20240326_GT.mrc (#1) using 3719 atoms 
    63224 average map value = 0.008983, steps = 44 
    63225 shifted from previous position = 0.0333 
    63226 rotated from previous position = 0.0452 degrees 
    63227 atoms outside contour = 1912, contour level = 0.0073613 
    63228  
    63229 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63230 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63231 Matrix rotation and translation 
    63232 0.58963985 0.36910282 0.71839262 227.46618481 
    63233 -0.09039832 -0.85371832 0.51282860 252.19550746 
    63234 0.80259142 -0.36732566 -0.47002007 263.57825436 
    63235 Axis -0.88329455 -0.08449921 -0.46114057 
    63236 Axis point 0.00000000 131.08567575 38.70544988 
    63237 Rotation angle (degrees) 150.11753520 
    63238 Shift along axis -343.77658925 
    63239  
    63240 
    63241 > fitmap #44 inMap #1
    63242 
    63243 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63244 relion_locres_filtered_20240326_GT.mrc (#1) using 3719 atoms 
    63245 average map value = 0.008982, steps = 40 
    63246 shifted from previous position = 0.0258 
    63247 rotated from previous position = 0.0554 degrees 
    63248 atoms outside contour = 1912, contour level = 0.0073613 
    63249  
    63250 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63251 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63252 Matrix rotation and translation 
    63253 0.58941028 0.36871102 0.71878209 227.49719093 
    63254 -0.09133467 -0.85364409 0.51278626 252.22381797 
    63255 0.80265403 -0.36789122 -0.46947050 263.59906269 
    63256 Axis -0.88321180 -0.08411329 -0.46136956 
    63257 Axis point 0.00000000 131.15350539 38.61823818 
    63258 Rotation angle (degrees) 150.09487469 
    63259 Shift along axis -343.76016394 
    63260  
    63261 
    63262 > hide #!1 models
    63263 
    63264 Drag select of 7 residues 
    63265 
    63266 > select up
    63267 
    63268 76 atoms, 77 bonds, 9 residues, 1 model selected 
    63269 
    63270 > delete sel
    63271 
    63272 > show #!1 models
    63273 
    63274 > fitmap #44 inMap #1
    63275 
    63276 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63277 relion_locres_filtered_20240326_GT.mrc (#1) using 3643 atoms 
    63278 average map value = 0.009033, steps = 60 
    63279 shifted from previous position = 0.0939 
    63280 rotated from previous position = 0.254 degrees 
    63281 atoms outside contour = 1868, contour level = 0.0073613 
    63282  
    63283 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63284 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63285 Matrix rotation and translation 
    63286 0.58721603 0.36738063 0.72125502 227.63928427 
    63287 -0.09498580 -0.85363227 0.51214221 252.38642438 
    63288 0.80383769 -0.36924710 -0.46637062 263.59994149 
    63289 Axis -0.88251536 -0.08268817 -0.46295713 
    63290 Axis point 0.00000000 131.35972548 38.14252414 
    63291 Rotation angle (degrees) 150.04219923 
    63292 Shift along axis -343.80001020 
    63293  
    63294 
    63295 > hide #!1 models
    63296 
    63297 Drag select of 7 residues 
    63298 
    63299 > select up
    63300 
    63301 70 atoms, 70 bonds, 8 residues, 1 model selected 
    63302 
    63303 > delete sel
    63304 
    63305 > fitmap #44 inMap #1
    63306 
    63307 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63308 relion_locres_filtered_20240326_GT.mrc (#1) using 3573 atoms 
    63309 average map value = 0.009065, steps = 60 
    63310 shifted from previous position = 0.0944 
    63311 rotated from previous position = 0.254 degrees 
    63312 atoms outside contour = 1823, contour level = 0.0073613 
    63313  
    63314 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63315 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63316 Matrix rotation and translation 
    63317 0.58804387 0.36337399 0.72260899 227.63918544 
    63318 -0.09818317 -0.85472554 0.50971003 252.52385510 
    63319 0.80284772 -0.37067990 -0.46693891 263.68704248 
    63320 Axis -0.88279454 -0.08045790 -0.46281782 
    63321 Axis point 0.00000000 131.74225731 38.14775838 
    63322 Rotation angle (degrees) 150.09006364 
    63323 Shift along axis -343.31522855 
    63324  
    63325 
    63326 > show #!1 models
    63327 
    63328 > hide #!1 models
    63329 
    63330 Drag select of 15 residues 
    63331 
    63332 > select up
    63333 
    63334 118 atoms, 119 bonds, 17 residues, 1 model selected 
    63335 
    63336 > delete sel
    63337 
    63338 > show #!1 models
    63339 
    63340 > fitmap #44 inMap #1
    63341 
    63342 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63343 relion_locres_filtered_20240326_GT.mrc (#1) using 3455 atoms 
    63344 average map value = 0.008967, steps = 40 
    63345 shifted from previous position = 0.17 
    63346 rotated from previous position = 0.499 degrees 
    63347 atoms outside contour = 1784, contour level = 0.0073613 
    63348  
    63349 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63350 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63351 Matrix rotation and translation 
    63352 0.58481873 0.36251496 0.72565140 227.88550631 
    63353 -0.10569784 -0.85289709 0.51126757 252.84421015 
    63354 0.80424811 -0.37569864 -0.46047314 263.73281084 
    63355 Axis -0.88164404 -0.07812509 -0.46540333 
    63356 Axis point 0.00000000 132.22551733 37.13312945 
    63357 Rotation angle (degrees) 149.80010785 
    63358 Shift along axis -343.40950360 
    63359  
    63360 
    63361 > fitmap #44 inMap #1
    63362 
    63363 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63364 relion_locres_filtered_20240326_GT.mrc (#1) using 3455 atoms 
    63365 average map value = 0.008967, steps = 28 
    63366 shifted from previous position = 0.00479 
    63367 rotated from previous position = 0.0195 degrees 
    63368 atoms outside contour = 1783, contour level = 0.0073613 
    63369  
    63370 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63371 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63372 Matrix rotation and translation 
    63373 0.58487473 0.36266704 0.72553026 227.88007614 
    63374 -0.10536217 -0.85292825 0.51128486 252.83430841 
    63375 0.80425143 -0.37548104 -0.46064480 263.72708147 
    63376 Axis -0.88166605 -0.07826844 -0.46533754 
    63377 Axis point 0.00000000 132.19898703 37.16183201 
    63378 Rotation angle (degrees) 149.80847079 
    63379 Shift along axis -343.42518480 
    63380  
    63381 
    63382 > hide #!1 models
    63383 
    63384 Drag select of 24 residues 
    63385 
    63386 > select clear
    63387 
    63388 Drag select of 14 residues 
    63389 
    63390 > select up
    63391 
    63392 127 atoms, 128 bonds, 17 residues, 1 model selected 
    63393 
    63394 > select up
    63395 
    63396 3455 atoms, 3497 bonds, 439 residues, 1 model selected 
    63397 
    63398 > select down
    63399 
    63400 127 atoms, 128 bonds, 17 residues, 1 model selected 
    63401 
    63402 > select clear
    63403 
    63404 Drag select of 12 residues 
    63405 
    63406 > select up
    63407 
    63408 144 atoms, 145 bonds, 20 residues, 1 model selected 
    63409 
    63410 > delete sel
    63411 
    63412 > show #!1 models
    63413 
    63414 > fitmap #44 inMap #1
    63415 
    63416 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63417 relion_locres_filtered_20240326_GT.mrc (#1) using 3311 atoms 
    63418 average map value = 0.008976, steps = 44 
    63419 shifted from previous position = 0.294 
    63420 rotated from previous position = 0.626 degrees 
    63421 atoms outside contour = 1710, contour level = 0.0073613 
    63422  
    63423 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63424 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63425 Matrix rotation and translation 
    63426 0.58670575 0.35271088 0.72895226 227.91230109 
    63427 -0.11307811 -0.85566093 0.50503239 253.22324625 
    63428 0.80186639 -0.37873396 -0.46213731 263.98791614 
    63429 Axis -0.88230346 -0.07279344 -0.46501798 
    63430 Axis point 0.00000000 133.15706792 37.19930453 
    63431 Rotation angle (degrees) 149.94513746 
    63432 Shift along axis -342.27992947 
    63433  
    63434 
    63435 > fitmap #44 inMap #1
    63436 
    63437 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63438 relion_locres_filtered_20240326_GT.mrc (#1) using 3311 atoms 
    63439 average map value = 0.008976, steps = 28 
    63440 shifted from previous position = 0.034 
    63441 rotated from previous position = 0.014 degrees 
    63442 atoms outside contour = 1710, contour level = 0.0073613 
    63443  
    63444 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63445 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63446 Matrix rotation and translation 
    63447 0.58675841 0.35280118 0.72886617 227.88952369 
    63448 -0.11284029 -0.85569344 0.50503050 253.19118511 
    63449 0.80186136 -0.37857636 -0.46227513 263.97734405 
    63450 Axis -0.88232341 -0.07288916 -0.46496512 
    63451 Axis point 0.00000000 133.12775430 37.22686107 
    63452 Rotation angle (degrees) 149.95186985 
    63453 Shift along axis -342.26741368 
    63454  
    63455 
    63456 > hide #!1 models
    63457 
    63458 Drag select of 16 residues 
    63459 
    63460 > select up
    63461 
    63462 155 atoms, 154 bonds, 19 residues, 1 model selected 
    63463 
    63464 > delete sel
    63465 
    63466 > show #!1 models
    63467 
    63468 > fitmap #44 inMap #1
    63469 
    63470 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63471 relion_locres_filtered_20240326_GT.mrc (#1) using 3156 atoms 
    63472 average map value = 0.008983, steps = 48 
    63473 shifted from previous position = 0.199 
    63474 rotated from previous position = 0.616 degrees 
    63475 atoms outside contour = 1643, contour level = 0.0073613 
    63476  
    63477 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63478 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63479 Matrix rotation and translation 
    63480 0.58674709 0.34943351 0.73049577 228.00257976 
    63481 -0.12309162 -0.85313185 0.50696598 253.65282207 
    63482 0.80036011 -0.38737872 -0.45756030 264.14363985 
    63483 Axis -0.88207505 -0.06890586 -0.46604248 
    63484 Axis point 0.00000000 134.11030158 36.32607643 
    63485 Rotation angle (degrees) 149.53878453 
    63486 Shift along axis -341.69570906 
    63487  
    63488 
    63489 > fitmap #44 inMap #1
    63490 
    63491 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63492 relion_locres_filtered_20240326_GT.mrc (#1) using 3156 atoms 
    63493 average map value = 0.008984, steps = 28 
    63494 shifted from previous position = 0.0368 
    63495 rotated from previous position = 0.0358 degrees 
    63496 atoms outside contour = 1640, contour level = 0.0073613 
    63497  
    63498 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63499 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63500 Matrix rotation and translation 
    63501 0.58674017 0.34919477 0.73061548 228.01580783 
    63502 -0.12369875 -0.85300580 0.50703030 253.70390106 
    63503 0.80027157 -0.38787127 -0.45729781 264.15982126 
    63504 Axis -0.88206005 -0.06865655 -0.46610766 
    63505 Axis point 0.00000000 134.18067121 36.27293002 
    63506 Rotation angle (degrees) 149.51722667 
    63507 Shift along axis -341.66898578 
    63508  
    63509 
    63510 > hide #!1 models
    63511 
    63512 Drag select of 13 residues 
    63513 
    63514 > fitmap sel inMap #1
    63515 
    63516 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63517 relion_locres_filtered_20240326_GT.mrc (#1) using 98 atoms 
    63518 average map value = 0.01059, steps = 64 
    63519 shifted from previous position = 5.08 
    63520 rotated from previous position = 17.1 degrees 
    63521 atoms outside contour = 33, contour level = 0.0073613 
    63522  
    63523 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63524 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63525 Matrix rotation and translation 
    63526 0.52262471 0.58169356 0.62329449 222.36519551 
    63527 -0.10358496 -0.68234325 0.72365589 255.15673104 
    63528 0.84624676 -0.44276438 -0.29635473 268.14156148 
    63529 Axis -0.85073322 -0.16261111 -0.49981058 
    63530 Axis point 0.00000000 126.34776879 23.08470181 
    63531 Rotation angle (degrees) 136.72204990 
    63532 Shift along axis -364.68476855 
    63533  
    63534 
    63535 > show #!1 models
    63536 
    63537 > fitmap sel inMap #1
    63538 
    63539 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63540 relion_locres_filtered_20240326_GT.mrc (#1) using 98 atoms 
    63541 average map value = 0.01059, steps = 64 
    63542 shifted from previous position = 5.08 
    63543 rotated from previous position = 17.1 degrees 
    63544 atoms outside contour = 33, contour level = 0.0073613 
    63545  
    63546 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63547 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63548 Matrix rotation and translation 
    63549 0.52262471 0.58169356 0.62329449 222.36519551 
    63550 -0.10358496 -0.68234325 0.72365589 255.15673104 
    63551 0.84624676 -0.44276438 -0.29635473 268.14156148 
    63552 Axis -0.85073322 -0.16261111 -0.49981058 
    63553 Axis point 0.00000000 126.34776879 23.08470181 
    63554 Rotation angle (degrees) 136.72204990 
    63555 Shift along axis -364.68476855 
    63556  
    63557 
    63558 > hide #!1 models
    63559 
    63560 Drag select of 51 residues 
    63561 
    63562 > delete sel
    63563 
    63564 > show #!1 models
    63565 
    63566 > fitmap #44 inMap #1
    63567 
    63568 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63569 relion_locres_filtered_20240326_GT.mrc (#1) using 2760 atoms 
    63570 average map value = 0.009631, steps = 40 
    63571 shifted from previous position = 0.152 
    63572 rotated from previous position = 0.785 degrees 
    63573 atoms outside contour = 1317, contour level = 0.0073613 
    63574  
    63575 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63576 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63577 Matrix rotation and translation 
    63578 0.59165911 0.34960901 0.72643860 227.97227162 
    63579 -0.13150098 -0.84715870 0.51481029 254.04935900 
    63580 0.79539109 -0.40011959 -0.45525523 264.34118038 
    63581 Axis -0.88312792 -0.06655578 -0.46438713 
    63582 Axis point 0.00000000 135.18775272 35.66164218 
    63583 Rotation angle (degrees) 148.80145452 
    63584 Shift along axis -340.99377341 
    63585  
    63586 
    63587 > fitmap #44 inMap #1
    63588 
    63589 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#44) to map
    63590 relion_locres_filtered_20240326_GT.mrc (#1) using 2760 atoms 
    63591 average map value = 0.009632, steps = 44 
    63592 shifted from previous position = 0.0176 
    63593 rotated from previous position = 0.0174 degrees 
    63594 atoms outside contour = 1318, contour level = 0.0073613 
    63595  
    63596 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#44) relative to
    63597 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63598 Matrix rotation and translation 
    63599 0.59142336 0.34972639 0.72657406 227.98648145 
    63600 -0.13155370 -0.84713303 0.51483906 254.06420020 
    63601 0.79555769 -0.40007135 -0.45500646 264.34597440 
    63602 Axis -0.88305467 -0.06658173 -0.46452268 
    63603 Axis point 0.00000000 135.18357708 35.63165379 
    63604 Rotation angle (degrees) 148.79931483 
    63605 Shift along axis -341.03526101 
    63606  
    63607 
    63608 > hide #!1 models
    63609 
    63610 > combine #34.5
    63611 
    63612 > hide #!44 models
    63613 
    63614 > rename #43 20240711_copi_golph3_beta_S711-L953.cif
    63615 
    63616 > rename #44 "20240711_copi_golph3_beta_H311-E659.cif E"
    63617 
    63618 > hide #45 models
    63619 
    63620 > show #45 models
    63621 
    63622 Drag select of 119 residues 
    63623 
    63624 > select up
    63625 
    63626 983 atoms, 1001 bonds, 126 residues, 1 model selected 
    63627 
    63628 > delete sel
    63629 
    63630 Drag select of 125 residues, 1 pseudobonds 
    63631 
    63632 > select up
    63633 
    63634 984 atoms, 997 bonds, 1 pseudobond, 130 residues, 2 models selected 
    63635 
    63636 > select clear
    63637 
    63638 Drag select of 98 residues, 1 pseudobonds 
    63639 
    63640 > select up
    63641 
    63642 854 atoms, 864 bonds, 1 pseudobond, 113 residues, 2 models selected 
    63643 
    63644 > delete sel
    63645 
    63646 Drag select of 3 residues 
    63647 
    63648 > delete sel
    63649 
    63650 > select #45/E:711
    63651 
    63652 6 atoms, 5 bonds, 1 residue, 1 model selected 
    63653 
    63654 > delete sel
    63655 
    63656 > select clear
    63657 
    63658 [Repeated 1 time(s)]
    63659 
    63660 > show #!1 models
    63661 
    63662 > fitmap #45 inMap #1
    63663 
    63664 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#45) to map
    63665 relion_locres_filtered_20240326_GT.mrc (#1) using 5629 atoms 
    63666 average map value = 0.009299, steps = 84 
    63667 shifted from previous position = 0.657 
    63668 rotated from previous position = 1.9 degrees 
    63669 atoms outside contour = 2808, contour level = 0.0073613 
    63670  
    63671 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#45) relative to
    63672 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63673 Matrix rotation and translation 
    63674 0.59225848 0.37767571 0.71175203 226.72630080 
    63675 -0.07049743 -0.85566692 0.51270288 251.66003249 
    63676 0.80265809 -0.35382932 -0.48015082 262.27101331 
    63677 Axis -0.88440020 -0.09278056 -0.45741453 
    63678 Axis point 0.00000000 129.47368947 39.98608571 
    63679 Rotation angle (degrees) 150.66610695 
    63680 Shift along axis -343.83251595 
    63681  
    63682 
    63683 > fitmap #45 inMap #1
    63684 
    63685 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#45) to map
    63686 relion_locres_filtered_20240326_GT.mrc (#1) using 5629 atoms 
    63687 average map value = 0.009298, steps = 80 
    63688 shifted from previous position = 0.0192 
    63689 rotated from previous position = 0.00781 degrees 
    63690 atoms outside contour = 2811, contour level = 0.0073613 
    63691  
    63692 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#45) relative to
    63693 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63694 Matrix rotation and translation 
    63695 0.59223513 0.37773154 0.71174183 226.71200459 
    63696 -0.07036932 -0.85569058 0.51268098 251.64790293 
    63697 0.80268656 -0.35371247 -0.48018932 262.26276156 
    63698 Axis -0.88439596 -0.09283444 -0.45741179 
    63699 Axis point 0.00000000 129.45801962 39.99582134 
    63700 Rotation angle (degrees) 150.67110775 
    63701 Shift along axis -343.82685295 
    63702  
    63703 
    63704 > hide #!1 models
    63705 
    63706 Drag select of 311 residues 
    63707 
    63708 > select up
    63709 
    63710 2750 atoms, 2784 bonds, 348 residues, 1 model selected 
    63711 
    63712 > delete sel
    63713 
    63714 > show #!1 models
    63715 
    63716 > fitmap #45 inMap #1
    63717 
    63718 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#45) to map
    63719 relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms 
    63720 average map value = 0.01059, steps = 52 
    63721 shifted from previous position = 1.26 
    63722 rotated from previous position = 0.253 degrees 
    63723 atoms outside contour = 1288, contour level = 0.0073613 
    63724  
    63725 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#45) relative to
    63726 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63727 Matrix rotation and translation 
    63728 0.59321265 0.38003875 0.70969663 225.96482374 
    63729 -0.07094065 -0.85345417 0.51631716 250.99038089 
    63730 0.80191407 -0.35663221 -0.47931961 261.53126127 
    63731 Axis -0.88455702 -0.09344367 -0.45697610 
    63732 Axis point 0.00000000 129.20184570 39.73542944 
    63733 Rotation angle (degrees) 150.43314979 
    63734 Shift along axis -342.84576864 
    63735  
    63736 
    63737 > fitmap #45 inMap #1
    63738 
    63739 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#45) to map
    63740 relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms 
    63741 average map value = 0.01059, steps = 40 
    63742 shifted from previous position = 0.0535 
    63743 rotated from previous position = 0.101 degrees 
    63744 atoms outside contour = 1290, contour level = 0.0073613 
    63745  
    63746 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#45) relative to
    63747 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63748 Matrix rotation and translation 
    63749 0.59430648 0.37945725 0.70909238 225.97131630 
    63750 -0.07012750 -0.85388494 0.51571567 251.02518193 
    63751 0.80117535 -0.35622004 -0.48085896 261.42747744 
    63752 Axis -0.88491636 -0.09345382 -0.45627779 
    63753 Axis point 0.00000000 129.21745407 39.86020483 
    63754 Rotation angle (degrees) 150.48406493 
    63755 Shift along axis -342.70852907 
    63756  
    63757 
    63758 > fitmap #45 inMap #1
    63759 
    63760 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#45) to map
    63761 relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms 
    63762 average map value = 0.01059, steps = 44 
    63763 shifted from previous position = 0.0151 
    63764 rotated from previous position = 0.0169 degrees 
    63765 atoms outside contour = 1288, contour level = 0.0073613 
    63766  
    63767 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#45) relative to
    63768 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63769 Matrix rotation and translation 
    63770 0.59421798 0.37952808 0.70912864 225.97949150 
    63771 -0.07032210 -0.85377549 0.51587034 251.02058532 
    63772 0.80122393 -0.35640685 -0.48063954 261.44695153 
    63773 Axis -0.88488174 -0.09342609 -0.45635060 
    63774 Axis point 0.00000000 129.22398147 39.83839206 
    63775 Rotation angle (degrees) 150.47009089 
    63776 Shift along axis -342.72846959 
    63777  
    63778 
    63779 > fitmap #45 inMap #1
    63780 
    63781 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#45) to map
    63782 relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms 
    63783 average map value = 0.01059, steps = 40 
    63784 shifted from previous position = 0.00768 
    63785 rotated from previous position = 0.029 degrees 
    63786 atoms outside contour = 1287, contour level = 0.0073613 
    63787  
    63788 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#45) relative to
    63789 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63790 Matrix rotation and translation 
    63791 0.59398329 0.37942187 0.70938205 225.98517523 
    63792 -0.07074672 -0.85373977 0.51587140 251.00885385 
    63793 0.80136056 -0.35660544 -0.48026431 261.46806297 
    63794 Axis -0.88480505 -0.09327818 -0.45652953 
    63795 Axis point 0.00000000 129.23630835 39.79919946 
    63796 Rotation angle (degrees) 150.45984747 
    63797 Shift along axis -342.73436402 
    63798  
    63799 
    63800 > fitmap #45 inMap #1
    63801 
    63802 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#45) to map
    63803 relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms 
    63804 average map value = 0.01059, steps = 48 
    63805 shifted from previous position = 0.0372 
    63806 rotated from previous position = 0.0583 degrees 
    63807 atoms outside contour = 1291, contour level = 0.0073613 
    63808  
    63809 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#45) relative to
    63810 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63811 Matrix rotation and translation 
    63812 0.59328440 0.37979142 0.70976904 225.97057232 
    63813 -0.07111790 -0.85353201 0.51616407 250.97978551 
    63814 0.80184528 -0.35670937 -0.47937727 261.52731805 
    63815 Axis -0.88458081 -0.09331121 -0.45695712 
    63816 Axis point 0.00000000 129.21347923 39.73550342 
    63817 Rotation angle (degrees) 150.43685085 
    63818 Shift along axis -342.81522902 
    63819  
    63820 
    63821 > fitmap #45 inMap #1
    63822 
    63823 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#45) to map
    63824 relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms 
    63825 average map value = 0.01059, steps = 40 
    63826 shifted from previous position = 0.0196 
    63827 rotated from previous position = 0.0316 degrees 
    63828 atoms outside contour = 1289, contour level = 0.0073613 
    63829  
    63830 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#45) relative to
    63831 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63832 Matrix rotation and translation 
    63833 0.59366012 0.37940807 0.70965990 225.98643656 
    63834 -0.07121481 -0.85364606 0.51596207 250.98998086 
    63835 0.80155855 -0.35684440 -0.47975615 261.50442466 
    63836 Axis -0.88469823 -0.09315074 -0.45676250 
    63837 Axis point 0.00000000 129.24460273 39.75420461 
    63838 Rotation angle (degrees) 150.44365724 
    63839 Shift along axis -342.75511812 
    63840  
    63841 
    63842 > fitmap #45 inMap #1
    63843 
    63844 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#45) to map
    63845 relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms 
    63846 average map value = 0.01059, steps = 28 
    63847 shifted from previous position = 0.00929 
    63848 rotated from previous position = 0.0509 degrees 
    63849 atoms outside contour = 1287, contour level = 0.0073613 
    63850  
    63851 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#45) relative to
    63852 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63853 Matrix rotation and translation 
    63854 0.59406746 0.37908202 0.70949325 225.99557899 
    63855 -0.07075223 -0.85395714 0.51551075 250.99082556 
    63856 0.80129768 -0.35644639 -0.48048724 261.46701123 
    63857 Axis -0.88484216 -0.09316104 -0.45648151 
    63858 Axis point 0.00000000 129.23418246 39.82618575 
    63859 Rotation angle (degrees) 150.48054736 
    63860 Shift along axis -342.70783910 
    63861  
    63862 
    63863 > fitmap #45 inMap #1
    63864 
    63865 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif E (#45) to map
    63866 relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms 
    63867 average map value = 0.01059, steps = 28 
    63868 shifted from previous position = 0.0463 
    63869 rotated from previous position = 0.0829 degrees 
    63870 atoms outside contour = 1289, contour level = 0.0073613 
    63871  
    63872 Position of copy of fold_20240711_copi_golph3_model_0.cif E (#45) relative to
    63873 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63874 Matrix rotation and translation 
    63875 0.59463580 0.37964339 0.70871656 225.96009472 
    63876 -0.06946606 -0.85393703 0.51571893 251.03681805 
    63877 0.80098860 -0.35589669 -0.48140920 261.39286546 
    63878 Axis -0.88502478 -0.09369157 -0.45601866 
    63879 Axis point 0.00000000 129.19288135 39.91860954 
    63880 Rotation angle (degrees) 150.49994385 
    63881 Shift along axis -342.70034326 
    63882  
    63883 
    63884 > hide #!1 models
    63885 
    63886 > show #!1 models
    63887 
    63888 > hide #!1 models
    63889 
    63890 > show #!44 models
    63891 
    63892 > show #!43 models
    63893 
    63894 > show #34.5 models
    63895 
    63896 > hide #34.5 models
    63897 
    63898 > show #34.5 models
    63899 
    63900 > hide #34.5 models
    63901 
    63902 > show #!1 models
    63903 
    63904 > hide #!1 models
    63905 
    63906 > hide #!44 models
    63907 
    63908 > hide #!43 models
    63909 
    63910 > rename #45 20240711_copi_golph3_beta_.cif
    63911 
    63912 > rename #44 20240711_copi_golph3_beta_H311-E659.cif
    63913 
    63914 > rename #45 20240711_copi_golph3_beta_M1-H311_.cif
    63915 
    63916 > rename #45 20240711_copi_golph3_beta_M1-H311_K660-.cif
    63917 
    63918 > rename #45 20240711_copi_golph3_beta_M1-H311_K660-A710.cif
    63919 
    63920 > hide #!45 models
    63921 
    63922 > show #!43 models
    63923 
    63924 > hide #!43 models
    63925 
    63926 > show #!44 models
    63927 
    63928 > hide #!44 models
    63929 
    63930 > show #34.7 models
    63931 
    63932 > show #!1 models
    63933 
    63934 > fitmap #45 inMap #1
    63935 
    63936 Fit molecule 20240711_copi_golph3_beta_M1-H311_K660-A710.cif (#45) to map
    63937 relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms 
    63938 average map value = 0.01059, steps = 40 
    63939 shifted from previous position = 0.0532 
    63940 rotated from previous position = 0.117 degrees 
    63941 atoms outside contour = 1289, contour level = 0.0073613 
    63942  
    63943 Position of 20240711_copi_golph3_beta_M1-H311_K660-A710.cif (#45) relative to
    63944 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63945 Matrix rotation and translation 
    63946 0.59367617 0.37945842 0.70961956 225.98435835 
    63947 -0.07111226 -0.85364991 0.51596985 250.98930930 
    63948 0.80155577 -0.35678165 -0.47980746 261.50161854 
    63949 Axis -0.88470437 -0.09319534 -0.45674152 
    63950 Axis point 0.00000000 129.23778490 39.76170662 
    63951 Rotation angle (degrees) 150.44592891 
    63952 Shift along axis -342.75902783 
    63953  
    63954 
    63955 > fitmap #45 inMap #1
    63956 
    63957 Fit molecule 20240711_copi_golph3_beta_M1-H311_K660-A710.cif (#45) to map
    63958 relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms 
    63959 average map value = 0.01059, steps = 40 
    63960 shifted from previous position = 0.00742 
    63961 rotated from previous position = 0.0217 degrees 
    63962 atoms outside contour = 1288, contour level = 0.0073613 
    63963  
    63964 Position of 20240711_copi_golph3_beta_M1-H311_K660-A710.cif (#45) relative to
    63965 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63966 Matrix rotation and translation 
    63967 0.59385384 0.37940106 0.70950155 225.98248456 
    63968 -0.07085124 -0.85375028 0.51583967 250.98962919 
    63969 0.80144726 -0.35660244 -0.48012184 261.48337883 
    63970 Axis -0.88476585 -0.09324450 -0.45661237 
    63971 Axis point 0.00000000 129.22894867 39.79401808 
    63972 Rotation angle (degrees) 150.45970162 
    63973 Shift along axis -342.74153332 
    63974  
    63975 
    63976 > fitmap #45 inMap #1
    63977 
    63978 Fit molecule 20240711_copi_golph3_beta_M1-H311_K660-A710.cif (#45) to map
    63979 relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms 
    63980 average map value = 0.01059, steps = 44 
    63981 shifted from previous position = 0.0064 
    63982 rotated from previous position = 0.0264 degrees 
    63983 atoms outside contour = 1288, contour level = 0.0073613 
    63984  
    63985 Position of 20240711_copi_golph3_beta_M1-H311_K660-A710.cif (#45) relative to
    63986 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    63987 Matrix rotation and translation 
    63988 0.59360615 0.37954711 0.70963069 225.97882798 
    63989 -0.07109608 -0.85361527 0.51602937 250.98864595 
    63990 0.80160906 -0.35677017 -0.47972697 261.50497336 
    63991 Axis -0.88468172 -0.09323055 -0.45677819 
    63992 Axis point 0.00000000 129.23274682 39.75680712 
    63993 Rotation angle (degrees) 150.44330889 
    63994 Shift along axis -342.76891558 
    63995  
    63996 
    63997 > show #!40 models
    63998 
    63999 > hide #!1 models
    64000 
    64001 > hide #34.7 models
    64002 
    64003 > show #!43 models
    64004 
    64005 > hide #!40 models
    64006 
    64007 > show #!40 models
    64008 
    64009 > hide #!40 models
    64010 
    64011 > show #!40 models
    64012 
    64013 > hide #!40 models
    64014 
    64015 > show #!40 models
    64016 
    64017 > fitmap #40 inMap #1
    64018 
    64019 Fit molecule fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40) to map
    64020 relion_locres_filtered_20240326_GT.mrc (#1) using 39508 atoms 
    64021 average map value = 0.005223, steps = 144 
    64022 shifted from previous position = 8 
    64023 rotated from previous position = 9.35 degrees 
    64024 atoms outside contour = 28718, contour level = 0.0073613 
    64025  
    64026 Position of fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif (#40)
    64027 relative to relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    64028 Matrix rotation and translation 
    64029 -0.52035327 0.84085371 0.14898840 220.06435873 
    64030 0.84298688 0.53366200 -0.06766092 260.64248984 
    64031 -0.13640238 0.09038768 -0.98652140 268.85959648 
    64032 Axis 0.48445666 0.87479082 0.00653869 
    64033 Axis point 50.37526868 0.00000000 130.77574819 
    64034 Rotation angle (degrees) 170.61199384 
    64035 Shift along axis 336.37729411 
    64036  
    64037 
    64038 > show #!1 models
    64039 
    64040 > hide #!40 models
    64041 
    64042 > show #!40 models
    64043 
    64044 > hide #!40 models
    64045 
    64046 > show #!40 models
    64047 
    64048 > hide #!40 models
    64049 
    64050 > show #34.1 models
    64051 
    64052 > hide #!43 models
    64053 
    64054 > show #!43 models
    64055 
    64056 > hide #!43 models
    64057 
    64058 > show #!43 models
    64059 
    64060 > show #!40 models
    64061 
    64062 > hide #!40 models
    64063 
    64064 > show #!40 models
    64065 
    64066 > hide #!43 models
    64067 
    64068 > hide #!40 models
    64069 
    64070 > show #!40 models
    64071 
    64072 > hide #!40 models
    64073 
    64074 > show #!40 models
    64075 
    64076 > hide #!40 models
    64077 
    64078 > hide #34.1 models
    64079 
    64080 > hide #!1 models
    64081 
    64082 > show #34.7 models
    64083 
    64084 > combine #34.7
    64085 
    64086 > hide #46 models
    64087 
    64088 > show #46 models
    64089 
    64090 > hide #46 models
    64091 
    64092 > show #46 models
    64093 
    64094 > fitmap #46 inMap #1
    64095 
    64096 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif G (#46) to map
    64097 relion_locres_filtered_20240326_GT.mrc (#1) using 2130 atoms 
    64098 average map value = 0.007774, steps = 64 
    64099 shifted from previous position = 0.0353 
    64100 rotated from previous position = 0.0322 degrees 
    64101 atoms outside contour = 1201, contour level = 0.0073613 
    64102  
    64103 Position of copy of fold_20240711_copi_golph3_model_0.cif G (#46) relative to
    64104 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    64105 Matrix rotation and translation 
    64106 0.60593369 0.38236496 0.69759688 225.81172809 
    64107 -0.05311428 -0.85550993 0.51505498 251.49986226 
    64108 0.79374003 -0.34914152 -0.49807324 260.96387774 
    64109 Axis -0.88865037 -0.09886368 -0.44780184 
    64110 Axis point 0.00000000 128.90476162 41.80977945 
    64111 Rotation angle (degrees) 150.90618802 
    64112 Shift along axis -342.39198394 
    64113  
    64114 
    64115 > show #!1 models
    64116 
    64117 > hide #!1 models
    64118 
    64119 > rename #46 20240711_copi_golph3_delta.cif
    64120 
    64121 > rename #46 20240711_copi_golph3_delta_M1-S273.cif
    64122 
    64123 > show #!45 models
    64124 
    64125 > hide #!45 models
    64126 
    64127 > show #!45 models
    64128 
    64129 > show #!1 models
    64130 
    64131 > hide #34.7 models
    64132 
    64133 > hide #46 models
    64134 
    64135 > hide #!45 models
    64136 
    64137 > hide #!1 models
    64138 
    64139 > combine #34.8
    64140 
    64141 [Repeated 2 time(s)]
    64142 
    64143 > hide #48 models
    64144 
    64145 > hide #49 models
    64146 
    64147 > fitmap #47 inMap #1
    64148 
    64149 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map
    64150 relion_locres_filtered_20240326_GT.mrc (#1) using 4752 atoms 
    64151 average map value = 0.007743, steps = 124 
    64152 shifted from previous position = 0.0191 
    64153 rotated from previous position = 0.0392 degrees 
    64154 atoms outside contour = 2924, contour level = 0.0073613 
    64155  
    64156 Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to
    64157 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    64158 Matrix rotation and translation 
    64159 0.60757687 0.39435331 0.68944602 230.62659179 
    64160 -0.16054833 -0.78913935 0.59286029 257.82317050 
    64161 0.77786540 -0.47089761 -0.41615005 262.55404626 
    64162 Axis -0.88422199 -0.07349639 -0.46124803 
    64163 Axis point 0.00000000 138.97213742 27.15377344 
    64164 Rotation angle (degrees) 143.02102194 
    64165 Shift along axis -343.97671300 
    64166  
    64167 Drag select of 5 residues 
    64168 
    64169 > select up
    64170 
    64171 227 atoms, 230 bonds, 31 residues, 1 model selected 
    64172 
    64173 > delete sel
    64174 
    64175 Drag select of 54 residues 
    64176 
    64177 > select up
    64178 
    64179 479 atoms, 486 bonds, 60 residues, 1 model selected 
    64180 
    64181 > delete sel
    64182 
    64183 > show #!1 models
    64184 
    64185 > fitmap #47 inMap #1
    64186 
    64187 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map
    64188 relion_locres_filtered_20240326_GT.mrc (#1) using 4046 atoms 
    64189 average map value = 0.007971, steps = 104 
    64190 shifted from previous position = 0.284 
    64191 rotated from previous position = 0.641 degrees 
    64192 atoms outside contour = 2487, contour level = 0.0073613 
    64193  
    64194 Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to
    64195 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    64196 Matrix rotation and translation 
    64197 0.60948011 0.40184910 0.68341151 230.98340907 
    64198 -0.15038863 -0.78776834 0.59733098 257.45116911 
    64199 0.77840687 -0.46683868 -0.41969560 262.45085439 
    64200 Axis -0.88482933 -0.07898616 -0.45917127 
    64201 Axis point 0.00000000 138.04760312 27.81377692 
    64202 Rotation angle (degrees) 143.03394478 
    64203 Shift along axis -345.22586461 
    64204  
    64205 
    64206 > hide #!1 models
    64207 
    64208 Drag select of 103 residues 
    64209 
    64210 > select down
    64211 
    64212 819 atoms, 103 residues, 1 model selected 
    64213 
    64214 > select up
    64215 
    64216 859 atoms, 872 bonds, 108 residues, 1 model selected 
    64217 
    64218 > delete sel
    64219 
    64220 > fitmap #47 inMap #1
    64221 
    64222 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map
    64223 relion_locres_filtered_20240326_GT.mrc (#1) using 3187 atoms 
    64224 average map value = 0.007182, steps = 116 
    64225 shifted from previous position = 2.92 
    64226 rotated from previous position = 6.31 degrees 
    64227 atoms outside contour = 2018, contour level = 0.0073613 
    64228  
    64229 Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to
    64230 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    64231 Matrix rotation and translation 
    64232 0.66603189 0.42601441 0.61230160 234.45007200 
    64233 -0.06317257 -0.78569984 0.61537386 254.56011043 
    64234 0.74324340 -0.44853928 -0.49638872 264.42690822 
    64235 Axis -0.90293190 -0.11112893 -0.41516785 
    64236 Axis point 0.00000000 134.36385127 39.39423841 
    64237 Rotation angle (degrees) 143.90373958 
    64238 Shift along axis -349.76299266 
    64239  
    64240 
    64241 > show #!1 models
    64242 
    64243 > hide #!1 models
    64244 
    64245 Drag select of 69 residues 
    64246 
    64247 > select up
    64248 
    64249 709 atoms, 716 bonds, 91 residues, 1 model selected 
    64250 Drag select of 93 residues 
    64251 
    64252 > select up
    64253 
    64254 826 atoms, 833 bonds, 108 residues, 1 model selected 
    64255 
    64256 > delete sel
    64257 
    64258 > select clear
    64259 
    64260 Drag select of 2 residues 
    64261 
    64262 > delete sel
    64263 
    64264 Drag select of 22 residues 
    64265 
    64266 > select up
    64267 
    64268 180 atoms, 182 bonds, 23 residues, 1 model selected 
    64269 
    64270 > delete sel
    64271 
    64272 > show #!1 models
    64273 
    64274 > fitmap #47 inMap #1
    64275 
    64276 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map
    64277 relion_locres_filtered_20240326_GT.mrc (#1) using 2162 atoms 
    64278 average map value = 0.0089, steps = 104 
    64279 shifted from previous position = 7.41 
    64280 rotated from previous position = 15.8 degrees 
    64281 atoms outside contour = 1181, contour level = 0.0073613 
    64282  
    64283 Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to
    64284 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    64285 Matrix rotation and translation 
    64286 0.81943643 0.23081206 0.52464247 241.33474078 
    64287 -0.08568686 -0.85571732 0.51029955 263.44202167 
    64288 0.56672894 -0.46311301 -0.68142839 275.80845765 
    64289 Axis -0.95019103 -0.04108247 -0.30894859 
    64290 Axis point 0.00000000 151.92138588 62.40884770 
    64291 Rotation angle (degrees) 149.18822401 
    64292 Shift along axis -325.34758904 
    64293  
    64294 
    64295 > hide #!1 models
    64296 
    64297 > show #!21 models
    64298 
    64299 > hide #!21 models
    64300 
    64301 > show #!18 models
    64302 
    64303 > hide #!18 models
    64304 
    64305 > show #!29 models
    64306 
    64307 > hide #!29 models
    64308 
    64309 > show #!26.2 models
    64310 
    64311 > ui tool show Matchmaker
    64312 
    64313 The cached device pixel ratio value was stale on window expose. Please file a
    64314 QTBUG which explains how to reproduce. 
    64315 
    64316 > matchmaker #!47 to #26.2
    64317 
    64318 Parameters 
    64319 --- 
    64320 Chain pairing | bb 
    64321 Alignment algorithm | Needleman-Wunsch 
    64322 Similarity matrix | BLOSUM-62 
    64323 SS fraction | 0.3 
    64324 Gap open (HH/SS/other) | 18/18/6 
    64325 Gap extend | 1 
    64326 SS matrix |  |  | H | S | O 
    64327 ---|---|---|--- 
    64328 H | 6 | -9 | -6 
    64329 S |  | 6 | -6 
    64330 O |  |  | 4 
    64331 Iteration cutoff | 2 
    64332  
    64333 Matchmaker 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif B, chain B (#26.2) with
    64334 copy of fold_20240711_copi_golph3_model_0.cif H, chain H (#47), sequence
    64335 alignment score = 1218.4 
    64336 RMSD between 231 pruned atom pairs is 0.343 angstroms; (across all 249 pairs:
    64337 2.083) 
    64338  
    64339 
    64340 > hide #!47 models
    64341 
    64342 > show #!47 models
    64343 
    64344 > show #!1 models
    64345 
    64346 > hide #!1 models
    64347 
    64348 > show #!1 models
    64349 
    64350 > hide #!1 models
    64351 
    64352 > show #!1 models
    64353 
    64354 > hide #!1 models
    64355 
    64356 > show #48 models
    64357 
    64358 > hide #!47 models
    64359 
    64360 > hide #48 models
    64361 
    64362 > show #34.8 models
    64363 
    64364 > hide #34.8 models
    64365 
    64366 > show #!29 models
    64367 
    64368 > hide #!29 models
    64369 
    64370 > hide #!26.2 models
    64371 
    64372 > show #!26.2 models
    64373 
    64374 > show #!47 models
    64375 
    64376 > hide #!47 models
    64377 
    64378 > show #!47 models
    64379 
    64380 > hide #!47 models
    64381 
    64382 > show #!47 models
    64383 
    64384 > hide #!47 models
    64385 
    64386 > show #!47 models
    64387 
    64388 > hide #!47 models
    64389 
    64390 > show #!47 models
    64391 
    64392 > hide #!26.2 models
    64393 
    64394 > fitmap #47 inMap #1
    64395 
    64396 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map
    64397 relion_locres_filtered_20240326_GT.mrc (#1) using 2162 atoms 
    64398 average map value = 0.01194, steps = 48 
    64399 shifted from previous position = 0.11 
    64400 rotated from previous position = 0.562 degrees 
    64401 atoms outside contour = 875, contour level = 0.0073613 
    64402  
    64403 Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to
    64404 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    64405 Matrix rotation and translation 
    64406 0.70971931 0.58971035 0.38540915 247.36545771 
    64407 0.22219868 -0.70653520 0.67188969 250.98140616 
    64408 0.66852543 -0.39121568 -0.63247453 271.39793443 
    64409 Axis -0.91653394 -0.24408275 -0.31684246 
    64410 Axis point 0.00000000 119.21261675 65.09791303 
    64411 Rotation angle (degrees) 144.55229672 
    64412 Shift along axis -373.96945993 
    64413  
    64414 
    64415 > fitmap #47 inMap #1
    64416 
    64417 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map
    64418 relion_locres_filtered_20240326_GT.mrc (#1) using 2162 atoms 
    64419 average map value = 0.01194, steps = 40 
    64420 shifted from previous position = 0.00676 
    64421 rotated from previous position = 0.0205 degrees 
    64422 atoms outside contour = 878, contour level = 0.0073613 
    64423  
    64424 Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to
    64425 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    64426 Matrix rotation and translation 
    64427 0.70954007 0.58999755 0.38529961 247.37542938 
    64428 0.22244451 -0.70636110 0.67199140 250.96234102 
    64429 0.66863393 -0.39109704 -0.63243321 271.38651874 
    64430 Axis -0.91647918 -0.24426002 -0.31686424 
    64431 Axis point 0.00000000 119.17339623 65.09831713 
    64432 Rotation angle (degrees) 144.55050910 
    64433 Shift along axis -374.00718183 
    64434  
    64435 
    64436 > show #!26.2 models
    64437 
    64438 > hide #!26.2 models
    64439 
    64440 > show #!26.2 models
    64441 
    64442 > hide #!26.2 models
    64443 
    64444 > show #!26.2 models
    64445 
    64446 > hide #!26.2 models
    64447 
    64448 > show #!26.2 models
    64449 
    64450 > hide #!26.2 models
    64451 
    64452 > show #!1 models
    64453 
    64454 > hide #!1 models
    64455 
    64456 > ui tool show Matchmaker
    64457 
    64458 The cached device pixel ratio value was stale on window expose. Please file a
    64459 QTBUG which explains how to reproduce. 
    64460 
    64461 > matchmaker #48 to #47
    64462 
    64463 Parameters 
    64464 --- 
    64465 Chain pairing | bb 
    64466 Alignment algorithm | Needleman-Wunsch 
    64467 Similarity matrix | BLOSUM-62 
    64468 SS fraction | 0.3 
    64469 Gap open (HH/SS/other) | 18/18/6 
    64470 Gap extend | 1 
    64471 SS matrix |  |  | H | S | O 
    64472 ---|---|---|--- 
    64473 H | 6 | -9 | -6 
    64474 S |  | 6 | -6 
    64475 O |  |  | 4 
    64476 Iteration cutoff | 2 
    64477  
    64478 Matchmaker copy of fold_20240711_copi_golph3_model_0.cif H, chain H (#47) with
    64479 copy of fold_20240711_copi_golph3_model_0.cif H, chain H (#48), sequence
    64480 alignment score = 2607.1 
    64481 RMSD between 277 pruned atom pairs is 0.000 angstroms; (across all 277 pairs:
    64482 0.000) 
    64483  
    64484 
    64485 > show #48 models
    64486 
    64487 > show #!1 models
    64488 
    64489 > hide #!1 models
    64490 
    64491 > hide #!47 models
    64492 
    64493 > show #!47 models
    64494 
    64495 > hide #48 models
    64496 
    64497 > show #48 models
    64498 
    64499 > show #!1 models
    64500 
    64501 > hide #!1 models
    64502 
    64503 > hide #!47 models
    64504 
    64505 > show #!47 models
    64506 
    64507 > hide #!47 models
    64508 
    64509 > show #!47 models
    64510 
    64511 Drag select of 86 residues 
    64512 
    64513 > delete sel
    64514 
    64515 > hide #!47 models
    64516 
    64517 > show #!47 models
    64518 
    64519 Drag select of 151 residues, 2 pseudobonds 
    64520 
    64521 > delete sel
    64522 
    64523 Drag select of 1 pseudobonds 
    64524 
    64525 > delete sel
    64526 
    64527 [Repeated 1 time(s)]
    64528 
    64529 > select add #48
    64530 
    64531 2885 atoms, 2926 bonds, 2 pseudobonds, 372 residues, 2 models selected 
    64532 
    64533 > select subtract #48
    64534 
    64535 Nothing selected 
    64536 Drag select of 20 residues, 2 pseudobonds 
    64537 
    64538 > \
    64539 
    64540 Unknown command: \ 
    64541 
    64542 > delete sel
    64543 
    64544 > select clear
    64545 
    64546 [Repeated 1 time(s)]Drag select of 1 pseudobonds 
    64547 
    64548 > delete sel
    64549 
    64550 > close #48
    64551 
    64552 > combine #34.8
    64553 
    64554 > ui tool show Matchmaker
    64555 
    64556 The cached device pixel ratio value was stale on window expose. Please file a
    64557 QTBUG which explains how to reproduce. 
    64558 
    64559 > matchmaker #48 to #47
    64560 
    64561 Parameters 
    64562 --- 
    64563 Chain pairing | bb 
    64564 Alignment algorithm | Needleman-Wunsch 
    64565 Similarity matrix | BLOSUM-62 
    64566 SS fraction | 0.3 
    64567 Gap open (HH/SS/other) | 18/18/6 
    64568 Gap extend | 1 
    64569 SS matrix |  |  | H | S | O 
    64570 ---|---|---|--- 
    64571 H | 6 | -9 | -6 
    64572 S |  | 6 | -6 
    64573 O |  |  | 4 
    64574 Iteration cutoff | 2 
    64575  
    64576 Matchmaker copy of fold_20240711_copi_golph3_model_0.cif H, chain H (#47) with
    64577 copy of fold_20240711_copi_golph3_model_0.cif H, chain H (#48), sequence
    64578 alignment score = 2607.1 
    64579 RMSD between 277 pruned atom pairs is 0.000 angstroms; (across all 277 pairs:
    64580 0.000) 
    64581  
    64582 Drag select of 6 residues 
    64583 
    64584 > select up
    64585 
    64586 227 atoms, 230 bonds, 31 residues, 1 model selected 
    64587 
    64588 > delete sel
    64589 
    64590 Drag select of 28 residues 
    64591 
    64592 > delete sel
    64593 
    64594 Drag select of 119 residues 
    64595 
    64596 > select up
    64597 
    64598 4305 atoms, 4371 bonds, 550 residues, 1 model selected 
    64599 
    64600 > select down
    64601 
    64602 947 atoms, 119 residues, 1 model selected 
    64603 
    64604 > delete sel
    64605 
    64606 > hide #!47 models
    64607 
    64608 > show #!47 models
    64609 
    64610 Drag select of 38 residues 
    64611 
    64612 > select up
    64613 
    64614 334 atoms, 339 bonds, 41 residues, 1 model selected 
    64615 
    64616 > delete sel
    64617 
    64618 Drag select of 57 residues 
    64619 
    64620 > select up
    64621 
    64622 542 atoms, 545 bonds, 72 residues, 1 model selected 
    64623 
    64624 > delete sel
    64625 
    64626 > hide #!47 models
    64627 
    64628 > show #!47 models
    64629 
    64630 > hide #!47 models
    64631 
    64632 > show #!47 models
    64633 
    64634 > hide #48 models
    64635 
    64636 > show #48 models
    64637 
    64638 > hide #48 models
    64639 
    64640 > show #48 models
    64641 
    64642 Drag select of 6 residues 
    64643 
    64644 > select up
    64645 
    64646 140 atoms, 141 bonds, 18 residues, 1 model selected 
    64647 
    64648 > delete sel
    64649 
    64650 > hide #!47 models
    64651 
    64652 > show #!47 models
    64653 
    64654 > hide #48 models
    64655 
    64656 > show #48 models
    64657 
    64658 > hide #48 models
    64659 
    64660 > show #46 models
    64661 
    64662 > hide #!47 models
    64663 
    64664 > hide #46 models
    64665 
    64666 > show #46 models
    64667 
    64668 > hide #46 models
    64669 
    64670 > show #!47 models
    64671 
    64672 > show #48 models
    64673 
    64674 > hide #48 models
    64675 
    64676 > hide #!47 models
    64677 
    64678 > show #!47 models
    64679 
    64680 > show #48 models
    64681 
    64682 > hide #48 models
    64683 
    64684 > show #48 models
    64685 
    64686 > close #47
    64687 
    64688 > combine #34.8
    64689 
    64690 > hide #47 models
    64691 
    64692 > show #!1 models
    64693 
    64694 > fitmap #48 inMap #1
    64695 
    64696 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#48) to map
    64697 relion_locres_filtered_20240326_GT.mrc (#1) using 2342 atoms 
    64698 average map value = 0.01138, steps = 60 
    64699 shifted from previous position = 0.0651 
    64700 rotated from previous position = 0.195 degrees 
    64701 atoms outside contour = 1014, contour level = 0.0073613 
    64702  
    64703 Position of copy of fold_20240711_copi_golph3_model_0.cif H (#48) relative to
    64704 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    64705 Matrix rotation and translation 
    64706 0.71115890 0.58912332 0.38364923 247.39861189 
    64707 0.22410392 -0.70720387 0.67055210 250.94518669 
    64708 0.66635610 -0.39089180 -0.63495917 271.61936050 
    64709 Axis -0.91700758 -0.24423744 -0.31534927 
    64710 Axis point 0.00000000 119.24873787 65.52138932 
    64711 Rotation angle (degrees) 144.63703576 
    64712 Shift along axis -373.81158195 
    64713  
    64714 
    64715 > fitmap #48 inMap #1
    64716 
    64717 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#48) to map
    64718 relion_locres_filtered_20240326_GT.mrc (#1) using 2342 atoms 
    64719 average map value = 0.01138, steps = 40 
    64720 shifted from previous position = 0.0265 
    64721 rotated from previous position = 0.0312 degrees 
    64722 atoms outside contour = 1014, contour level = 0.0073613 
    64723  
    64724 Position of copy of fold_20240711_copi_golph3_model_0.cif H (#48) relative to
    64725 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    64726 Matrix rotation and translation 
    64727 0.71140727 0.58868677 0.38385881 247.37086149 
    64728 0.22374794 -0.70750308 0.67035532 250.99066812 
    64729 0.66621060 -0.39100802 -0.63504028 271.62910057 
    64730 Axis -0.91708532 -0.24396987 -0.31533033 
    64731 Axis point 0.00000000 119.31297346 65.51699851 
    64732 Rotation angle (degrees) 144.64356816 
    64733 Shift along axis -373.74723998 
    64734  
    64735 
    64736 > fitmap #48 inMap #1
    64737 
    64738 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#48) to map
    64739 relion_locres_filtered_20240326_GT.mrc (#1) using 2342 atoms 
    64740 average map value = 0.01138, steps = 28 
    64741 shifted from previous position = 0.0378 
    64742 rotated from previous position = 0.0647 degrees 
    64743 atoms outside contour = 1014, contour level = 0.0073613 
    64744  
    64745 Position of copy of fold_20240711_copi_golph3_model_0.cif H (#48) relative to
    64746 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    64747 Matrix rotation and translation 
    64748 0.71085766 0.58959184 0.38348773 247.41765408 
    64749 0.22438320 -0.70685733 0.67082405 250.91144646 
    64750 0.66658350 -0.39081221 -0.63476945 271.59805846 
    64751 Axis -0.91691149 -0.24450348 -0.31542253 
    64752 Axis point 0.00000000 119.19010859 65.50641851 
    64753 Rotation angle (degrees) 144.62540379 
    64754 Shift along axis -373.87695812 
    64755  
    64756 
    64757 > fitmap #48 inMap #1
    64758 
    64759 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#48) to map
    64760 relion_locres_filtered_20240326_GT.mrc (#1) using 2342 atoms 
    64761 average map value = 0.01138, steps = 36 
    64762 shifted from previous position = 0.0123 
    64763 rotated from previous position = 0.0407 degrees 
    64764 atoms outside contour = 1014, contour level = 0.0073613 
    64765  
    64766 Position of copy of fold_20240711_copi_golph3_model_0.cif H (#48) relative to
    64767 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    64768 Matrix rotation and translation 
    64769 0.71124414 0.58902886 0.38363626 247.39861223 
    64770 0.22405044 -0.70725020 0.67052111 250.94807788 
    64771 0.66628311 -0.39095033 -0.63499973 271.62700923 
    64772 Axis -0.91703322 -0.24418608 -0.31531450 
    64773 Axis point 0.00000000 119.26151546 65.52755174 
    64774 Rotation angle (degrees) 144.63711740 
    64775 Shift along axis -373.79870608 
    64776  
    64777 
    64778 > hide #!1 models
    64779 
    64780 Drag select of 1 residues 
    64781 
    64782 > delete
    64783 
    64784 Missing or invalid "atoms" argument: empty atom specifier 
    64785 
    64786 > delete sel
    64787 
    64788 > show #!1 models
    64789 
    64790 > hide #!1 models
    64791 
    64792 > rename #48 20240711_copi_golph3_gamma1_M1-.cif
    64793 
    64794 > rename #48 20240711_copi_golph3_gamma1_M1-P299.cif
    64795 
    64796 > hide #48 models
    64797 
    64798 > show #48 models
    64799 
    64800 > show #47 models
    64801 
    64802 > hide #47 models
    64803 
    64804 > show #49 models
    64805 
    64806 > hide #49 models
    64807 
    64808 > show #47 models
    64809 
    64810 > hide #48 models
    64811 
    64812 > fitmap #47 inMap #1
    64813 
    64814 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map
    64815 relion_locres_filtered_20240326_GT.mrc (#1) using 4752 atoms 
    64816 average map value = 0.007743, steps = 124 
    64817 shifted from previous position = 0.0191 
    64818 rotated from previous position = 0.0392 degrees 
    64819 atoms outside contour = 2924, contour level = 0.0073613 
    64820  
    64821 Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to
    64822 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    64823 Matrix rotation and translation 
    64824 0.60757687 0.39435331 0.68944602 230.62659179 
    64825 -0.16054833 -0.78913935 0.59286029 257.82317050 
    64826 0.77786540 -0.47089761 -0.41615005 262.55404626 
    64827 Axis -0.88422199 -0.07349639 -0.46124803 
    64828 Axis point 0.00000000 138.97213742 27.15377344 
    64829 Rotation angle (degrees) 143.02102194 
    64830 Shift along axis -343.97671300 
    64831  
    64832 
    64833 > show #49 models
    64834 
    64835 > fitmap #47 inMap #1
    64836 
    64837 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map
    64838 relion_locres_filtered_20240326_GT.mrc (#1) using 4752 atoms 
    64839 average map value = 0.007743, steps = 104 
    64840 shifted from previous position = 0.00703 
    64841 rotated from previous position = 0.0108 degrees 
    64842 atoms outside contour = 2927, contour level = 0.0073613 
    64843  
    64844 Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to
    64845 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    64846 Matrix rotation and translation 
    64847 0.60743054 0.39443811 0.68952644 230.63380408 
    64848 -0.16056711 -0.78913122 0.59286602 257.82805616 
    64849 0.77797580 -0.47084019 -0.41600861 262.54601287 
    64850 Axis -0.88417588 -0.07352104 -0.46133249 
    64851 Axis point 0.00000000 138.96283890 27.13220472 
    64852 Rotation angle (degrees) 143.02086830 
    64853 Shift along axis -343.99763979 
    64854  
    64855 
    64856 > hide #49 models
    64857 
    64858 Drag select of 50 residues 
    64859 
    64860 > select up
    64861 
    64862 618 atoms, 629 bonds, 78 residues, 1 model selected 
    64863 
    64864 > delete sel
    64865 
    64866 Drag select of 83 residues 
    64867 
    64868 > select up
    64869 
    64870 690 atoms, 696 bonds, 90 residues, 1 model selected 
    64871 
    64872 > delete sel
    64873 
    64874 > show #!1 models
    64875 
    64876 > fitmap #47 inMap #1
    64877 
    64878 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map
    64879 relion_locres_filtered_20240326_GT.mrc (#1) using 3444 atoms 
    64880 average map value = 0.008708, steps = 68 
    64881 shifted from previous position = 0.469 
    64882 rotated from previous position = 2.57 degrees 
    64883 atoms outside contour = 1900, contour level = 0.0073613 
    64884  
    64885 Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to
    64886 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    64887 Matrix rotation and translation 
    64888 0.62018224 0.35375614 0.70016468 228.85507380 
    64889 -0.18985557 -0.79832412 0.57151856 259.33965078 
    64890 0.76113655 -0.48737583 -0.42794386 263.29720774 
    64891 Axis -0.88845160 -0.05115766 -0.45611035 
    64892 Axis point 0.00000000 143.49126811 27.87004377 
    64893 Rotation angle (degrees) 143.42166543 
    64894 Shift along axis -336.68644741 
    64895  
    64896 
    64897 > fitmap #47 inMap #1
    64898 
    64899 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map
    64900 relion_locres_filtered_20240326_GT.mrc (#1) using 3444 atoms 
    64901 average map value = 0.008708, steps = 96 
    64902 shifted from previous position = 0.029 
    64903 rotated from previous position = 0.0136 degrees 
    64904 atoms outside contour = 1901, contour level = 0.0073613 
    64905  
    64906 Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to
    64907 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    64908 Matrix rotation and translation 
    64909 0.62021708 0.35362394 0.70020060 228.82245994 
    64910 -0.18978418 -0.79845951 0.57135311 259.34581465 
    64911 0.76112597 -0.48724996 -0.42810599 263.30010916 
    64912 Axis -0.88847111 -0.05113383 -0.45607502 
    64913 Axis point 0.00000000 143.49650857 27.90034895 
    64914 Rotation angle (degrees) 143.43429526 
    64915 Shift along axis -336.64809142 
    64916  
    64917 
    64918 > hide #!1 models
    64919 
    64920 Drag select of 65 residues 
    64921 
    64922 > select up
    64923 
    64924 597 atoms, 608 bonds, 74 residues, 1 model selected 
    64925 
    64926 > delete sel
    64927 
    64928 Drag select of 21 residues 
    64929 
    64930 > delete sel
    64931 
    64932 Drag select of 17 residues 
    64933 
    64934 > delete sel
    64935 
    64936 Drag select of 18 residues 
    64937 
    64938 > delete sel
    64939 
    64940 > select #47/H:299
    64941 
    64942 7 atoms, 7 bonds, 1 residue, 1 model selected 
    64943 
    64944 > delete sel
    64945 
    64946 > fitmap #47 inMap #1
    64947 
    64948 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map
    64949 relion_locres_filtered_20240326_GT.mrc (#1) using 2419 atoms 
    64950 average map value = 0.01024, steps = 44 
    64951 shifted from previous position = 0.284 
    64952 rotated from previous position = 1.02 degrees 
    64953 atoms outside contour = 1151, contour level = 0.0073613 
    64954  
    64955 Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to
    64956 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    64957 Matrix rotation and translation 
    64958 0.62119616 0.36398811 0.69399423 228.98038917 
    64959 -0.19221934 -0.78776013 0.58522278 259.54027074 
    64960 0.75971512 -0.49693726 -0.41938801 263.08595483 
    64961 Axis -0.88810416 -0.05393564 -0.45646682 
    64962 Axis point 0.00000000 143.67946123 26.52760116 
    64963 Rotation angle (degrees) 142.46449868 
    64964 Shift along axis -337.44691426 
    64965  
    64966 
    64967 > fitmap #47 inMap #1
    64968 
    64969 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map
    64970 relion_locres_filtered_20240326_GT.mrc (#1) using 2419 atoms 
    64971 average map value = 0.01024, steps = 60 
    64972 shifted from previous position = 0.0143 
    64973 rotated from previous position = 0.00854 degrees 
    64974 atoms outside contour = 1148, contour level = 0.0073613 
    64975  
    64976 Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to
    64977 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    64978 Matrix rotation and translation 
    64979 0.62131237 0.36393339 0.69391889 228.97598227 
    64980 -0.19220002 -0.78775480 0.58523631 259.54869305 
    64981 0.75962496 -0.49698578 -0.41949380 263.07832863 
    64982 Axis -0.88814013 -0.05392258 -0.45639837 
    64983 Axis point 0.00000000 143.69008420 26.53435500 
    64984 Rotation angle (degrees) 142.46375765 
    64985 Shift along axis -337.42681283 
    64986  
    64987 
    64988 > show #!1 models
    64989 
    64990 > hide #!1 models
    64991 
    64992 > hide #47 models
    64993 
    64994 > show #47 models
    64995 
    64996 Drag select of 52 residues 
    64997 
    64998 > select up
    64999 
    65000 459 atoms, 467 bonds, 61 residues, 1 model selected 
    65001 
    65002 > delete sel
    65003 
    65004 Drag select of 100 residues 
    65005 
    65006 > delete sel
    65007 
    65008 > fitmap #47 inMap #1
    65009 
    65010 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map
    65011 relion_locres_filtered_20240326_GT.mrc (#1) using 1163 atoms 
    65012 average map value = 0.01156, steps = 68 
    65013 shifted from previous position = 0.58 
    65014 rotated from previous position = 3.44 degrees 
    65015 atoms outside contour = 468, contour level = 0.0073613 
    65016  
    65017 Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to
    65018 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    65019 Matrix rotation and translation 
    65020 0.63759665 0.40239523 0.65692358 230.93358222 
    65021 -0.14062120 -0.77761789 0.61281000 258.39112625 
    65022 0.75742735 -0.48310299 -0.43922126 263.51570190 
    65023 Axis -0.89302698 -0.08189754 -0.44248798 
    65024 Axis point 0.00000000 139.97272064 30.35060145 
    65025 Rotation angle (degrees) 142.15013070 
    65026 Shift along axis -343.99404715 
    65027  
    65028 
    65029 > show #!1 models
    65030 
    65031 > fitmap #47 inMap #1
    65032 
    65033 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#47) to map
    65034 relion_locres_filtered_20240326_GT.mrc (#1) using 1163 atoms 
    65035 average map value = 0.01156, steps = 44 
    65036 shifted from previous position = 0.0398 
    65037 rotated from previous position = 0.0682 degrees 
    65038 atoms outside contour = 469, contour level = 0.0073613 
    65039  
    65040 Position of copy of fold_20240711_copi_golph3_model_0.cif H (#47) relative to
    65041 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    65042 Matrix rotation and translation 
    65043 0.63844248 0.40177726 0.65648019 230.94848014 
    65044 -0.14041420 -0.77782291 0.61259723 258.41035864 
    65045 0.75675297 -0.48328724 -0.44017996 263.52900178 
    65046 Axis -0.89330160 -0.08173657 -0.44196310 
    65047 Axis point 0.00000000 140.03543333 30.45542839 
    65048 Rotation angle (degrees) 142.16497515 
    65049 Shift along axis -343.89831746 
    65050  
    65051 
    65052 > hide #!1 models
    65053 
    65054 > rename #47 20240711_copi_golph3_gamma1_K300-F448.cif
    65055 
    65056 > show #!29 models
    65057 
    65058 > hide #!29 models
    65059 
    65060 > show #!29 models
    65061 
    65062 > hide #!29 models
    65063 
    65064 > show #!26.2 models
    65065 
    65066 > hide #!26.2 models
    65067 
    65068 > hide #47 models
    65069 
    65070 > show #47 models
    65071 
    65072 > show #48 models
    65073 
    65074 > hide #48 models
    65075 
    65076 > show #48 models
    65077 
    65078 > hide #48 models
    65079 
    65080 > hide #47 models
    65081 
    65082 > show #49 models
    65083 
    65084 Drag select of 144 residues 
    65085 
    65086 > select up
    65087 
    65088 1164 atoms, 1180 bonds, 148 residues, 1 model selected 
    65089 
    65090 > delete sel
    65091 
    65092 Drag select of 113 residues 
    65093 
    65094 > select up
    65095 
    65096 1009 atoms, 1027 bonds, 128 residues, 1 model selected 
    65097 
    65098 > delete sel
    65099 
    65100 Drag select of 109 residues 
    65101 
    65102 > select up
    65103 
    65104 851 atoms, 860 bonds, 114 residues, 1 model selected 
    65105 
    65106 > delete sel
    65107 
    65108 > fitmap #49 inMap #1
    65109 
    65110 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif H (#49) to map
    65111 relion_locres_filtered_20240326_GT.mrc (#1) using 1728 atoms 
    65112 average map value = 0.01048, steps = 52 
    65113 shifted from previous position = 1.15 
    65114 rotated from previous position = 3.81 degrees 
    65115 atoms outside contour = 801, contour level = 0.0073613 
    65116  
    65117 Position of copy of fold_20240711_copi_golph3_model_0.cif H (#49) relative to
    65118 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    65119 Matrix rotation and translation 
    65120 0.61805201 0.33351201 0.71188584 227.92732460 
    65121 -0.18854207 -0.81623462 0.54608876 258.90803305 
    65122 0.76319303 -0.47173168 -0.44159440 264.15773596 
    65123 Axis -0.88889010 -0.04480796 -0.45592394 
    65124 Axis point 0.00000000 143.45556759 30.46288448 
    65125 Rotation angle (degrees) 145.07363431 
    65126 Shift along axis -334.63931738 
    65127  
    65128 
    65129 > show #!1 models
    65130 
    65131 > hide #!1 models
    65132 
    65133 Drag select of 21 residues 
    65134 
    65135 > select up
    65136 
    65137 300 atoms, 303 bonds, 36 residues, 1 model selected 
    65138 
    65139 > delete sel
    65140 
    65141 Drag select of 4 residues 
    65142 
    65143 > delete sel
    65144 
    65145 > select clear
    65146 
    65147 Drag select of 4 residues, 1 pseudobonds 
    65148 
    65149 > delete sel
    65150 
    65151 Drag select of 11 residues 
    65152 
    65153 > delete sel
    65154 
    65155 > select #49/H:447
    65156 
    65157 9 atoms, 8 bonds, 1 residue, 1 model selected 
    65158 
    65159 > delete sel
    65160 
    65161 > select #49/H:448
    65162 
    65163 11 atoms, 11 bonds, 1 residue, 1 model selected 
    65164 
    65165 > delete sel
    65166 
    65167 > rename #49 20240711_copi_golph3_gammm1_T449-.cif
    65168 
    65169 > rename #49 20240711_copi_golph3_gammm1_T449-R609.cif
    65170 
    65171 > show #!1 models
    65172 
    65173 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    65174 > dataset/Chimera sessions/20240715_leaf_fitting_AF3_only_v2.cxs"
    65175 
    65176 > hide #!1 models
    65177 
    65178 > hide #!49 models
    65179 
    65180 > show #48 models
    65181 
    65182 > hide #48 models
    65183 
    65184 > show #47 models
    65185 
    65186 > hide #47 models
    65187 
    65188 > show #!49 models
    65189 
    65190 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    65191 > dataset/Chimera sessions/20240715_leaf_fitting_AF3_only_v2.cxs"
    65192 
    65193 > fitmap #49 inMap #1
    65194 
    65195 Fit molecule 20240711_copi_golph3_gammm1_T449-R609.cif (#49) to map
    65196 relion_locres_filtered_20240326_GT.mrc (#1) using 1264 atoms 
    65197 average map value = 0.009619, steps = 80 
    65198 shifted from previous position = 0.462 
    65199 rotated from previous position = 0.922 degrees 
    65200 atoms outside contour = 624, contour level = 0.0073613 
    65201  
    65202 Position of 20240711_copi_golph3_gammm1_T449-R609.cif (#49) relative to
    65203 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    65204 Matrix rotation and translation 
    65205 0.61374753 0.32116926 0.72122415 227.71817899 
    65206 -0.19898081 -0.82110208 0.53497477 259.15238914 
    65207 0.76401611 -0.47184921 -0.44004285 264.55513680 
    65208 Axis -0.88780842 -0.03773356 -0.45866370 
    65209 Axis point 0.00000000 144.29403366 30.27810400 
    65210 Rotation angle (degrees) 145.45678076 
    65211 Shift along axis -333.29069740 
    65212  
    65213 
    65214 > hide #!49 models
    65215 
    65216 > show #34.1 models
    65217 
    65218 > fitmap #34.1 inMap #1
    65219 
    65220 Fit molecule fold_20240711_copi_golph3_model_0.cif A (#34.1) to map
    65221 relion_locres_filtered_20240326_GT.mrc (#1) using 2371 atoms 
    65222 average map value = 0.00748, steps = 40 
    65223 shifted from previous position = 0.0303 
    65224 rotated from previous position = 0.0201 degrees 
    65225 atoms outside contour = 1257, contour level = 0.0073613 
    65226  
    65227 Position of fold_20240711_copi_golph3_model_0.cif A (#34.1) relative to
    65228 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    65229 Matrix rotation and translation 
    65230 0.52743413 0.46261732 0.71259978 230.64249169 
    65231 0.01546111 -0.84383896 0.53637372 257.96942955 
    65232 0.84945523 -0.27188422 -0.45222204 263.21843979 
    65233 Axis -0.86556951 -0.14655953 -0.47886295 
    65234 Axis point 0.00000000 122.21935439 38.51117125 
    65235 Rotation angle (degrees) 152.16715037 
    65236 Shift along axis -363.49054517 
    65237  
    65238 
    65239 > hide #34.1 models
    65240 
    65241 > show #34.2 models
    65242 
    65243 > fitmap #34.2 inMap #1
    65244 
    65245 Fit molecule fold_20240711_copi_golph3_model_0.cif B (#34.2) to map
    65246 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    65247 average map value = 0.007695, steps = 48 
    65248 shifted from previous position = 0.00177 
    65249 rotated from previous position = 0.00707 degrees 
    65250 atoms outside contour = 833, contour level = 0.0073613 
    65251  
    65252 Position of fold_20240711_copi_golph3_model_0.cif B (#34.2) relative to
    65253 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    65254 Matrix rotation and translation 
    65255 0.64422761 0.35685772 0.67647864 226.67911377 
    65256 -0.02945305 -0.87224662 0.48817861 253.34478005 
    65257 0.76426651 -0.33442250 -0.55141481 256.81467971 
    65258 Axis -0.90096195 -0.09615053 -0.42311066 
    65259 Axis point 0.00000000 129.87656483 45.56303427 
    65260 Rotation angle (degrees) 152.83769521 
    65261 Shift along axis -337.24952092 
    65262  
    65263 
    65264 > show #34.3 models
    65265 
    65266 > fitmap #34.3 inMap #1
    65267 
    65268 Fit molecule fold_20240711_copi_golph3_model_0.cif C (#34.3) to map
    65269 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    65270 average map value = 0.01001, steps = 48 
    65271 shifted from previous position = 0.0263 
    65272 rotated from previous position = 0.0703 degrees 
    65273 atoms outside contour = 625, contour level = 0.0073613 
    65274  
    65275 Position of fold_20240711_copi_golph3_model_0.cif C (#34.3) relative to
    65276 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    65277 Matrix rotation and translation 
    65278 -0.54970504 0.35440909 -0.75645130 335.69327096 
    65279 0.52748818 0.84943598 0.01465384 166.87860828 
    65280 0.64775041 -0.39096383 -0.65388584 271.22208974 
    65281 Axis -0.27558852 -0.95405575 0.11759501 
    65282 Axis point 75.42683569 0.00000000 209.16244404 
    65283 Rotation angle (degrees) 132.61568455 
    65284 Shift along axis -219.83034570 
    65285  
    65286 
    65287 > hide #34.3 models
    65288 
    65289 > show #34.9 models
    65290 
    65291 > fitmap #34.9 inMap #1
    65292 
    65293 Fit molecule fold_20240711_copi_golph3_model_0.cif I (#34.9) to map
    65294 relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms 
    65295 average map value = 0.009574, steps = 48 
    65296 shifted from previous position = 0.145 
    65297 rotated from previous position = 1.13 degrees 
    65298 atoms outside contour = 675, contour level = 0.0073613 
    65299  
    65300 Position of fold_20240711_copi_golph3_model_0.cif I (#34.9) relative to
    65301 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    65302 Matrix rotation and translation 
    65303 0.73435854 0.57870236 0.35471269 247.45554258 
    65304 0.24940833 -0.71608940 0.65192901 251.86879523 
    65305 0.63127886 -0.39028134 -0.67019956 274.80631520 
    65306 Axis -0.92440250 -0.24530409 -0.29207178 
    65307 Axis point 0.00000000 120.90579003 71.44053765 
    65308 Rotation angle (degrees) 145.68647177 
    65309 Shift along axis -370.79613621 
    65310  
    65311 
    65312 > fitmap #34.9 inMap #1
    65313 
    65314 Fit molecule fold_20240711_copi_golph3_model_0.cif I (#34.9) to map
    65315 relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms 
    65316 average map value = 0.009573, steps = 28 
    65317 shifted from previous position = 0.0418 
    65318 rotated from previous position = 0.0849 degrees 
    65319 atoms outside contour = 674, contour level = 0.0073613 
    65320  
    65321 Position of fold_20240711_copi_golph3_model_0.cif I (#34.9) relative to
    65322 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    65323 Matrix rotation and translation 
    65324 0.73385633 0.57878680 0.35561316 247.42525713 
    65325 0.24844240 -0.71590736 0.65249752 251.87628137 
    65326 0.63224303 -0.39049005 -0.66916833 274.71078782 
    65327 Axis -0.92423836 -0.24513422 -0.29273309 
    65328 Axis point 0.00000000 120.90736206 71.25729870 
    65329 Rotation angle (degrees) 145.65035277 
    65330 Shift along axis -370.84034745 
    65331  
    65332 
    65333 > hide #34.2 models
    65334 
    65335 > show #34.1 models
    65336 
    65337 > show #34.2 models
    65338 
    65339 > show #34.3 models
    65340 
    65341 > show #34.4 models
    65342 
    65343 > show #34.5 models
    65344 
    65345 > show #34.6 models
    65346 
    65347 > show #34.7 models
    65348 
    65349 > show #34.8 models
    65350 
    65351 > show #38 models
    65352 
    65353 > show #39 models
    65354 
    65355 > show #!40 models
    65356 
    65357 > hide #!40 models
    65358 
    65359 > show #41 models
    65360 
    65361 > show #42 models
    65362 
    65363 > show #!43 models
    65364 
    65365 > show #!44 models
    65366 
    65367 > show #!45 models
    65368 
    65369 > show #46 models
    65370 
    65371 > show #47 models
    65372 
    65373 > show #48 models
    65374 
    65375 > show #!49 models
    65376 
    65377 > show #!1 models
    65378 
    65379 > hide #34.4 models
    65380 
    65381 > hide #34.5 models
    65382 
    65383 > hide #34.6 models
    65384 
    65385 > hide #34.7 models
    65386 
    65387 > hide #34.8 models
    65388 
    65389 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    65390 > dataset/Chimera sessions/20240715_leaf_fitting_AF3_only_v3.cxs"
    65391 
    65392 > volume #1 level 0.00566
    65393 
    65394 > movie record
    65395 
    65396 > turn y 2 180
    65397 
    65398 > wait 180
    65399 
    65400 > movie encode /Users/becca/Desktop/movie1.mp4
    65401 
    65402 Movie saved to /Users/becca/Desktop/movie1.mp4 
    65403  
    65404 
    65405 > volume #1 level 0.004904
    65406 
    65407 > volume #1 level 0.00755
    65408 
    65409 > volume #1 level 0.005849
    65410 
    65411 > hide #42 models
    65412 
    65413 > show #42 models
    65414 
    65415 > hide #41 models
    65416 
    65417 > show #41 models
    65418 
    65419 > hide #47 models
    65420 
    65421 > show #47 models
    65422 
    65423 > hide #!1 models
    65424 
    65425 > show #34.8 models
    65426 
    65427 > hide #34.8 models
    65428 
    65429 > show #34.8 models
    65430 
    65431 > hide #34.8 models
    65432 
    65433 > show #34.8 models
    65434 
    65435 > hide #34.8 models
    65436 
    65437 > show #34.8 models
    65438 
    65439 > hide #34.8 models
    65440 
    65441 > show #34.8 models
    65442 
    65443 > hide #34.8 models
    65444 
    65445 > show #!1 models
    65446 
    65447 > show #!40 models
    65448 
    65449 > hide #!40 models
    65450 
    65451 > show #!40 models
    65452 
    65453 > hide #!40 models
    65454 
    65455 > show #23 models
    65456 
    65457 > hide #23 models
    65458 
    65459 > show #22 models
    65460 
    65461 > hide #22 models
    65462 
    65463 > show #22 models
    65464 
    65465 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    65466 > dataset/Chimera sessions/20240715_leaf_fitting_AF3_only_v4.cxs"
    65467 
    65468 ——— End of log from Wed Jul 24 16:40:43 2024 ———
    65469 
    65470 opened ChimeraX session 
    65471 
    65472 > hide #!49 models
    65473 
    65474 > hide #48 models
    65475 
    65476 > hide #47 models
    65477 
    65478 > hide #46 models
    65479 
    65480 > show #46 models
    65481 
    65482 > show #47 models
    65483 
    65484 > show #48 models
    65485 
    65486 > hide #48 models
    65487 
    65488 > show #!49 models
    65489 
    65490 > show #48 models
    65491 
    65492 > hide #34.9 models
    65493 
    65494 > show #34.9 models
    65495 
    65496 > hide #38 models
    65497 
    65498 > show #38 models
    65499 
    65500 > hide #38 models
    65501 
    65502 > show #38 models
    65503 
    65504 > ui tool show "Fit in Map"
    65505 
    65506 The cached device pixel ratio value was stale on window expose. Please file a
    65507 QTBUG which explains how to reproduce. 
    65508 
    65509 > fitmap #38 inMap #1
    65510 
    65511 Fit molecule 20240711_copi_golph3_alpha_M1-T591.cif (#38) to map
    65512 relion_locres_filtered_20240326_GT.mrc (#1) using 4763 atoms 
    65513 average map value = 0.008699, steps = 44 
    65514 shifted from previous position = 0.0233 
    65515 rotated from previous position = 0.0214 degrees 
    65516 atoms outside contour = 1803, contour level = 0.0058489 
    65517  
    65518 Position of 20240711_copi_golph3_alpha_M1-T591.cif (#38) relative to
    65519 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    65520 Matrix rotation and translation 
    65521 0.57928342 0.37611015 0.72316794 229.39206867 
    65522 -0.04023814 -0.87290909 0.48622075 258.29781268 
    65523 0.81413243 -0.31075855 -0.49052779 263.87511201 
    65524 Axis -0.88184067 -0.10065027 -0.46068054 
    65525 Axis point 0.00000000 129.96605027 41.81021370 
    65526 Rotation angle (degrees) 153.13537908 
    65527 Shift along axis -349.84712980 
    65528  
    65529 
    65530 > hide #39 models
    65531 
    65532 > show #39 models
    65533 
    65534 > combine #34.9
    65535 
    65536 > hide #34.9 models
    65537 
    65538 > hide #!49 models
    65539 
    65540 > hide #48 models
    65541 
    65542 > hide #47 models
    65543 
    65544 > hide #46 models
    65545 
    65546 > hide #!45 models
    65547 
    65548 > hide #!44 models
    65549 
    65550 > hide #!43 models
    65551 
    65552 > hide #42 models
    65553 
    65554 > hide #41 models
    65555 
    65556 > hide #39 models
    65557 
    65558 > hide #38 models
    65559 
    65560 > hide #34.3 models
    65561 
    65562 > hide #34.2 models
    65563 
    65564 > hide #34.1 models
    65565 
    65566 > fitmap #50 inMap #1
    65567 
    65568 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif I (#50) to map
    65569 relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms 
    65570 average map value = 0.009574, steps = 28 
    65571 shifted from previous position = 0.0408 
    65572 rotated from previous position = 0.068 degrees 
    65573 atoms outside contour = 589, contour level = 0.0058489 
    65574  
    65575 Position of copy of fold_20240711_copi_golph3_model_0.cif I (#50) relative to
    65576 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    65577 Matrix rotation and translation 
    65578 0.73431871 0.57860445 0.35495479 247.44441726 
    65579 0.24911606 -0.71613386 0.65199192 251.87236537 
    65580 0.63144057 -0.39034494 -0.67001016 274.79529283 
    65581 Axis -0.92438844 -0.24519930 -0.29220425 
    65582 Axis point 0.00000000 120.91785184 71.40627014 
    65583 Rotation angle (degrees) 145.68113010 
    65584 Shift along axis -370.79003714 
    65585  
    65586 
    65587 > fitmap #50 inMap #1
    65588 
    65589 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif I (#50) to map
    65590 relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms 
    65591 average map value = 0.009573, steps = 28 
    65592 shifted from previous position = 0.0372 
    65593 rotated from previous position = 0.0715 degrees 
    65594 atoms outside contour = 588, contour level = 0.0058489 
    65595  
    65596 Position of copy of fold_20240711_copi_golph3_model_0.cif I (#50) relative to
    65597 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    65598 Matrix rotation and translation 
    65599 0.73383141 0.57880777 0.35563043 247.42412190 
    65600 0.24841612 -0.71588088 0.65253657 251.87349377 
    65601 0.63228227 -0.39050751 -0.66912106 274.71167249 
    65602 Axis -0.92422993 -0.24513816 -0.29275642 
    65603 Axis point 0.00000000 120.90618853 71.25299813 
    65604 Rotation angle (degrees) 145.64787358 
    65605 Shift along axis -370.84418966 
    65606  
    65607 
    65608 > fitmap #50 inMap #1
    65609 
    65610 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif I (#50) to map
    65611 relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms 
    65612 average map value = 0.009574, steps = 28 
    65613 shifted from previous position = 0.0348 
    65614 rotated from previous position = 0.0675 degrees 
    65615 atoms outside contour = 590, contour level = 0.0058489 
    65616  
    65617 Position of copy of fold_20240711_copi_golph3_model_0.cif I (#50) relative to
    65618 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    65619 Matrix rotation and translation 
    65620 0.73429425 0.57859687 0.35501774 247.44244987 
    65621 0.24906331 -0.71614294 0.65200210 251.87347979 
    65622 0.63148983 -0.39033950 -0.66996690 274.79017546 
    65623 Axis -0.92438098 -0.24518406 -0.29224062 
    65624 Axis point 0.00000000 120.91792431 71.39713333 
    65625 Rotation angle (degrees) 145.68063673 
    65626 Shift along axis -370.79130830 
    65627  
    65628 
    65629 > fitmap #50 inMap #1
    65630 
    65631 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif I (#50) to map
    65632 relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms 
    65633 average map value = 0.009573, steps = 28 
    65634 shifted from previous position = 0.0362 
    65635 rotated from previous position = 0.0737 degrees 
    65636 atoms outside contour = 588, contour level = 0.0058489 
    65637  
    65638 Position of copy of fold_20240711_copi_golph3_model_0.cif I (#50) relative to
    65639 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    65640 Matrix rotation and translation 
    65641 0.73379774 0.57879982 0.35571284 247.42116016 
    65642 0.24833408 -0.71588294 0.65256554 251.87411343 
    65643 0.63235358 -0.39051550 -0.66904901 274.70620339 
    65644 Axis -0.92421916 -0.24511679 -0.29280829 
    65645 Axis point 0.00000000 120.90704736 71.24013812 
    65646 Rotation angle (degrees) 145.64603009 
    65647 Shift along axis -370.84620633 
    65648  
    65649 
    65650 > fitmap #50 inMap #1
    65651 
    65652 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif I (#50) to map
    65653 relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms 
    65654 average map value = 0.009574, steps = 28 
    65655 shifted from previous position = 0.0359 
    65656 rotated from previous position = 0.0685 degrees 
    65657 atoms outside contour = 590, contour level = 0.0058489 
    65658  
    65659 Position of copy of fold_20240711_copi_golph3_model_0.cif I (#50) relative to
    65660 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    65661 Matrix rotation and translation 
    65662 0.73426229 0.57859784 0.35508226 247.44015914 
    65663 0.24900080 -0.71613881 0.65203051 251.87330676 
    65664 0.63155164 -0.39034565 -0.66990505 274.78627468 
    65665 Axis -0.92437078 -0.24517082 -0.29228400 
    65666 Axis point 0.00000000 120.91787349 71.38689486 
    65667 Rotation angle (degrees) 145.67890818 
    65668 Shift along axis -370.79406718 
    65669  
    65670 
    65671 > fitmap #50 inMap #1
    65672 
    65673 Fit molecule copy of fold_20240711_copi_golph3_model_0.cif I (#50) to map
    65674 relion_locres_filtered_20240326_GT.mrc (#1) using 1420 atoms 
    65675 average map value = 0.009573, steps = 28 
    65676 shifted from previous position = 0.0374 
    65677 rotated from previous position = 0.0746 degrees 
    65678 atoms outside contour = 588, contour level = 0.0058489 
    65679  
    65680 Position of copy of fold_20240711_copi_golph3_model_0.cif I (#50) relative to
    65681 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    65682 Matrix rotation and translation 
    65683 0.73376385 0.57879138 0.35579647 247.41816530 
    65684 0.24825171 -0.71588596 0.65259357 251.87483810 
    65685 0.63242524 -0.39052249 -0.66897719 274.70055088 
    65686 Axis -0.92420837 -0.24509508 -0.29286054 
    65687 Axis point 0.00000000 120.90789483 71.22715847 
    65688 Rotation angle (degrees) 145.64425753 
    65689 Shift along axis -370.84817350 
    65690  
    65691 
    65692 > rename #50 20240711_copi_golph3_zeta1.cif
    65693 
    65694 > hide #!1 models
    65695 
    65696 > show #!1 models
    65697 
    65698 > hide #!1 models
    65699 
    65700 > show #!1 models
    65701 
    65702 > show #!18 models
    65703 
    65704 > hide #!18 models
    65705 
    65706 > show #!19 models
    65707 
    65708 > hide #!19 models
    65709 
    65710 > show #!20 models
    65711 
    65712 > hide #!20 models
    65713 
    65714 > show #!49 models
    65715 
    65716 > show #48 models
    65717 
    65718 > hide #!1 models
    65719 
    65720 > ui mousemode right select
    65721 
    65722 Drag select of 16 residues 
    65723 
    65724 > select up
    65725 
    65726 149 atoms, 150 bonds, 18 residues, 1 model selected 
    65727 
    65728 > delete sel
    65729 
    65730 Drag select of 7 residues 
    65731 
    65732 > delete sel
    65733 
    65734 Drag select of 1 residues 
    65735 
    65736 > delete sel
    65737 
    65738 Drag select of 1 residues 
    65739 
    65740 > delete sel
    65741 
    65742 > show #!1 models
    65743 
    65744 > hide #!1 models
    65745 
    65746 > show #12 models
    65747 
    65748 > hide #12 models
    65749 
    65750 > show #10 models
    65751 
    65752 > hide #10 models
    65753 
    65754 > show #26.3 models
    65755 
    65756 > hide #26.3 models
    65757 
    65758 > show #26.3 models
    65759 
    65760 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    65761 > dataset/Chimera sessions/20240805_leaf_fitting_AF3_update_v1.cxs"
    65762 
    65763 > hide #50 models
    65764 
    65765 > show #50 models
    65766 
    65767 > hide #26.3 models
    65768 
    65769 > hide #50 models
    65770 
    65771 > hide #!49 models
    65772 
    65773 > hide #48 models
    65774 
    65775 > show #34.2 models
    65776 
    65777 > hide #34.2 models
    65778 
    65779 > show #!1 models
    65780 
    65781 > combine #34.2
    65782 
    65783 > combine #34.3
    65784 
    65785 > show #34.2 models
    65786 
    65787 > hide #34.2 models
    65788 
    65789 > show #34.2 models
    65790 
    65791 > show #34.3 models
    65792 
    65793 > hide #34.3 models
    65794 
    65795 > hide #34.2 models
    65796 
    65797 > show #34.2 models
    65798 
    65799 > show #34.3 models
    65800 
    65801 > hide #51 models
    65802 
    65803 > hide #52 models
    65804 
    65805 > hide #34.3 models
    65806 
    65807 > hide #34.2 models
    65808 
    65809 > hide #22 models
    65810 
    65811 > show #51 models
    65812 
    65813 > show #52 models
    65814 
    65815 > rename #51 20240711_copi_golph3_Arf1_.cif
    65816 
    65817 > rename #52 20240711_copi_golph3_Arf1_.cif
    65818 
    65819 > hide #52 models
    65820 
    65821 > show #52 models
    65822 
    65823 > show #!49 models
    65824 
    65825 > show #48 models
    65826 
    65827 > hide #48 models
    65828 
    65829 > hide #!49 models
    65830 
    65831 > show #!45 models
    65832 
    65833 > show #!44 models
    65834 
    65835 > hide #!45 models
    65836 
    65837 > hide #!44 models
    65838 
    65839 > hide #51 models
    65840 
    65841 > show #51 models
    65842 
    65843 > hide #51 models
    65844 
    65845 > show #51 models
    65846 
    65847 > hide #51 models
    65848 
    65849 > rename #51 20240711_copi_golph3_beta_Arf1_.cif
    65850 
    65851 > rename #52 20240711_copi_golph3_gamma_Arf1_.cif
    65852 
    65853 > hide #52 models
    65854 
    65855 > show #52 models
    65856 
    65857 > hide #52 models
    65858 
    65859 > show #51 models
    65860 
    65861 > combine #34.2
    65862 
    65863 > hide #51 models
    65864 
    65865 > show #!37 models
    65866 
    65867 > hide #!37 models
    65868 
    65869 > show #!36 models
    65870 
    65871 > hide #!36 models
    65872 
    65873 > show #!36 models
    65874 
    65875 > hide #!36 models
    65876 
    65877 > ui tool show Matchmaker
    65878 
    65879 The cached device pixel ratio value was stale on window expose. Please file a
    65880 QTBUG which explains how to reproduce. 
    65881 
    65882 > show #!36 models
    65883 
    65884 > hide #!36 models
    65885 
    65886 > matchmaker #53 to #36
    65887 
    65888 Parameters 
    65889 --- 
    65890 Chain pairing | bb 
    65891 Alignment algorithm | Needleman-Wunsch 
    65892 Similarity matrix | BLOSUM-62 
    65893 SS fraction | 0.3 
    65894 Gap open (HH/SS/other) | 18/18/6 
    65895 Gap extend | 1 
    65896 SS matrix |  |  | H | S | O 
    65897 ---|---|---|--- 
    65898 H | 6 | -9 | -6 
    65899 S |  | 6 | -6 
    65900 O |  |  | 4 
    65901 Iteration cutoff | 2 
    65902  
    65903 Matchmaker copy of 3tjz_yeast_cow_Arf1_gamma_zeta_COPI.cif A, chain A (#36)
    65904 with copy of fold_20240711_copi_golph3_model_0.cif B, chain B (#53), sequence
    65905 alignment score = 717.9 
    65906 RMSD between 159 pruned atom pairs is 0.586 angstroms; (across all 159 pairs:
    65907 0.586) 
    65908  
    65909 
    65910 > show #!37 models
    65911 
    65912 > hide #!37 models
    65913 
    65914 > show #!36 models
    65915 
    65916 > hide #!36 models
    65917 
    65918 > show #!36 models
    65919 
    65920 > hide #!36 models
    65921 
    65922 > hide #53 models
    65923 
    65924 > rename #53 20240711_copi_golph3_third_Arf1.cif
    65925 
    65926 > show #51 models
    65927 
    65928 > fitmap #51 inMap #1
    65929 
    65930 Fit molecule 20240711_copi_golph3_beta_Arf1_.cif (#51) to map
    65931 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    65932 average map value = 0.007696, steps = 48 
    65933 shifted from previous position = 0.00615 
    65934 rotated from previous position = 0.0275 degrees 
    65935 atoms outside contour = 688, contour level = 0.0058489 
    65936  
    65937 Position of 20240711_copi_golph3_beta_Arf1_.cif (#51) relative to
    65938 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    65939 Matrix rotation and translation 
    65940 0.64457520 0.35659608 0.67628548 226.70008894 
    65941 -0.02948840 -0.87231016 0.48806293 253.33598453 
    65942 0.76397202 -0.33453583 -0.55175404 256.79298601 
    65943 Axis -0.90106555 -0.09605086 -0.42291265 
    65944 Axis point 0.00000000 129.88971353 45.58172879 
    65945 Rotation angle (degrees) 152.84115898 
    65946 Shift along axis -337.20578188 
    65947  
    65948 
    65949 > fitmap #51 inMap #1
    65950 
    65951 Fit molecule 20240711_copi_golph3_beta_Arf1_.cif (#51) to map
    65952 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    65953 average map value = 0.007695, steps = 64 
    65954 shifted from previous position = 0.00981 
    65955 rotated from previous position = 0.0296 degrees 
    65956 atoms outside contour = 688, contour level = 0.0058489 
    65957  
    65958 Position of 20240711_copi_golph3_beta_Arf1_.cif (#51) relative to
    65959 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    65960 Matrix rotation and translation 
    65961 0.64420575 0.35687129 0.67649230 226.67308114 
    65962 -0.02949189 -0.87222673 0.48821180 253.34669641 
    65963 0.76428344 -0.33445989 -0.55136867 256.81918555 
    65964 Axis -0.90095431 -0.09614504 -0.42312818 
    65965 Axis point 0.00000000 129.88010697 45.56012856 
    65966 Rotation angle (degrees) 152.83492327 
    65967 Shift along axis -337.24755383 
    65968  
    65969 
    65970 > show #52 models
    65971 
    65972 > fitmap #52 inMap #1
    65973 
    65974 Fit molecule 20240711_copi_golph3_gamma_Arf1_.cif (#52) to map
    65975 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    65976 average map value = 0.01001, steps = 84 
    65977 shifted from previous position = 0.027 
    65978 rotated from previous position = 0.0679 degrees 
    65979 atoms outside contour = 497, contour level = 0.0058489 
    65980  
    65981 Position of 20240711_copi_golph3_gamma_Arf1_.cif (#52) relative to
    65982 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    65983 Matrix rotation and translation 
    65984 -0.54981633 0.35457906 -0.75629075 335.68690009 
    65985 0.52678693 0.84985645 0.01547717 166.87961505 
    65986 0.64822645 -0.38989448 -0.65405257 271.15412697 
    65987 Axis -0.27539685 -0.95418515 0.11699266 
    65988 Axis point 75.48645841 0.00000000 209.07432900 
    65989 Rotation angle (degrees) 132.61013952 
    65990 Shift along axis -219.95812251 
    65991  
    65992 
    65993 > show #53 models
    65994 
    65995 > fitmap #53 inMap #1
    65996 
    65997 Fit molecule 20240711_copi_golph3_third_Arf1.cif (#53) to map
    65998 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    65999 average map value = 0.00665, steps = 44 
    66000 shifted from previous position = 0.31 
    66001 rotated from previous position = 2.81 degrees 
    66002 atoms outside contour = 711, contour level = 0.0058489 
    66003  
    66004 Position of 20240711_copi_golph3_third_Arf1.cif (#53) relative to
    66005 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    66006 Matrix rotation and translation 
    66007 0.73474151 0.66767249 0.11986808 227.72567702 
    66008 0.67552614 -0.70407307 -0.21896472 323.51774462 
    66009 -0.06180084 0.24185649 -0.96834193 187.17487412 
    66010 Axis 0.93019969 0.36671135 0.01585314 
    66011 Axis point 0.00000000 104.57055845 105.25607505 
    66012 Rotation angle (degrees) 165.65853934 
    66013 Shift along axis 333.43529205 
    66014  
    66015 
    66016 > fitmap #53 inMap #1
    66017 
    66018 Fit molecule 20240711_copi_golph3_third_Arf1.cif (#53) to map
    66019 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    66020 average map value = 0.00665, steps = 40 
    66021 shifted from previous position = 0.0136 
    66022 rotated from previous position = 0.0308 degrees 
    66023 atoms outside contour = 713, contour level = 0.0058489 
    66024  
    66025 Position of 20240711_copi_golph3_third_Arf1.cif (#53) relative to
    66026 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    66027 Matrix rotation and translation 
    66028 0.73476750 0.66754990 0.12039046 227.72558336 
    66029 0.67553483 -0.70406983 -0.21894833 323.51171062 
    66030 -0.06139564 0.24220407 -0.96828083 187.19776419 
    66031 Axis 0.93020512 0.36668652 0.01610666 
    66032 Axis point 0.00000000 104.56609656 105.24562509 
    66033 Rotation angle (degrees) 165.64809683 
    66034 Shift along axis 333.47401758 
    66035  
    66036 
    66037 > fitmap #53 inMap #1
    66038 
    66039 Fit molecule 20240711_copi_golph3_third_Arf1.cif (#53) to map
    66040 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    66041 average map value = 0.006651, steps = 28 
    66042 shifted from previous position = 0.0356 
    66043 rotated from previous position = 0.0154 degrees 
    66044 atoms outside contour = 710, contour level = 0.0058489 
    66045  
    66046 Position of 20240711_copi_golph3_third_Arf1.cif (#53) relative to
    66047 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    66048 Matrix rotation and translation 
    66049 0.73472974 0.66763686 0.12013838 227.74881556 
    66050 0.67555870 -0.70405152 -0.21893356 323.53092283 
    66051 -0.06158450 0.24201753 -0.96831548 187.18349736 
    66052 Axis 0.93019581 0.36671541 0.01598621 
    66053 Axis point 0.00000000 104.57069352 105.24747902 
    66054 Rotation angle (degrees) 165.65434959 
    66055 Shift along axis 333.48712519 
    66056  
    66057 
    66058 > fitmap #53 inMap #1
    66059 
    66060 Fit molecule 20240711_copi_golph3_third_Arf1.cif (#53) to map
    66061 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    66062 average map value = 0.00665, steps = 40 
    66063 shifted from previous position = 0.0139 
    66064 rotated from previous position = 0.0172 degrees 
    66065 atoms outside contour = 711, contour level = 0.0058489 
    66066  
    66067 Position of 20240711_copi_golph3_third_Arf1.cif (#53) relative to
    66068 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    66069 Matrix rotation and translation 
    66070 0.73469719 0.66763496 0.12034777 227.73810152 
    66071 0.67562058 -0.70405850 -0.21872005 323.53156953 
    66072 -0.06129328 0.24200244 -0.96833773 187.20374727 
    66073 Axis 0.93018806 0.36672909 0.01612277 
    66074 Axis point 0.00000000 104.57889965 105.23349404 
    66075 Rotation angle (degrees) 165.66149440 
    66076 Shift along axis 333.50594426 
    66077  
    66078 
    66079 > fitmap #53 inMap #1
    66080 
    66081 Fit molecule 20240711_copi_golph3_third_Arf1.cif (#53) to map
    66082 relion_locres_filtered_20240326_GT.mrc (#1) using 1457 atoms 
    66083 average map value = 0.00665, steps = 40 
    66084 shifted from previous position = 0.00406 
    66085 rotated from previous position = 0.0122 degrees 
    66086 atoms outside contour = 710, contour level = 0.0058489 
    66087  
    66088 Position of 20240711_copi_golph3_third_Arf1.cif (#53) relative to
    66089 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    66090 Matrix rotation and translation 
    66091 0.73468704 0.66761159 0.12053931 227.74415717 
    66092 0.67563895 -0.70401573 -0.21880095 323.53301656 
    66093 -0.06121248 0.24219128 -0.96829562 187.20665379 
    66094 Axis 0.93018391 0.36673632 0.01619750 
    66095 Axis point 0.00000000 104.57131692 105.23348164 
    66096 Rotation angle (degrees) 165.65285419 
    66097 Shift along axis 333.52753885 
    66098  
    66099 
    66100 > hide #53 models
    66101 
    66102 > hide #52 models
    66103 
    66104 > hide #51 models
    66105 
    66106 > show #51 models
    66107 
    66108 > hide #!1 models
    66109 
    66110 Drag select of 14 residues 
    66111 
    66112 > delete sel
    66113 
    66114 > show #!1 models
    66115 
    66116 > show #53 models
    66117 
    66118 > fitmap #51 inMap #1
    66119 
    66120 Fit molecule 20240711_copi_golph3_beta_Arf1_.cif (#51) to map
    66121 relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms 
    66122 average map value = 0.007965, steps = 44 
    66123 shifted from previous position = 0.1 
    66124 rotated from previous position = 1.93 degrees 
    66125 atoms outside contour = 589, contour level = 0.0058489 
    66126  
    66127 Position of 20240711_copi_golph3_beta_Arf1_.cif (#51) relative to
    66128 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    66129 Matrix rotation and translation 
    66130 0.62705671 0.37531487 0.68259697 225.36835982 
    66131 -0.03832747 -0.86035100 0.50825895 253.00409308 
    66132 0.77803013 -0.34486940 -0.52510400 258.42181793 
    66133 Axis -0.89528843 -0.10014929 -0.43408380 
    66134 Axis point 0.00000000 129.63459702 43.56218732 
    66135 Rotation angle (degrees) 151.54590708 
    66136 Shift along axis -339.28459171 
    66137  
    66138 
    66139 > fitmap #51 inMap #1
    66140 
    66141 Fit molecule 20240711_copi_golph3_beta_Arf1_.cif (#51) to map
    66142 relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms 
    66143 average map value = 0.007965, steps = 48 
    66144 shifted from previous position = 0.00646 
    66145 rotated from previous position = 0.023 degrees 
    66146 atoms outside contour = 589, contour level = 0.0058489 
    66147  
    66148 Position of 20240711_copi_golph3_beta_Arf1_.cif (#51) relative to
    66149 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    66150 Matrix rotation and translation 
    66151 0.62729835 0.37514040 0.68247084 225.37847302 
    66152 -0.03855985 -0.86029805 0.50833100 252.99193667 
    66153 0.77782383 -0.34519117 -0.52519820 258.41030972 
    66154 Axis -0.89535433 -0.10002635 -0.43397620 
    66155 Axis point 0.00000000 129.65621524 43.55537227 
    66156 Rotation angle (degrees) 151.53386009 
    66157 Shift along axis -339.24337871 
    66158  
    66159 
    66160 > fitmap #51 inMap #1
    66161 
    66162 Fit molecule 20240711_copi_golph3_beta_Arf1_.cif (#51) to map
    66163 relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms 
    66164 average map value = 0.007965, steps = 48 
    66165 shifted from previous position = 0.0346 
    66166 rotated from previous position = 0.0831 degrees 
    66167 atoms outside contour = 588, contour level = 0.0058489 
    66168  
    66169 Position of 20240711_copi_golph3_beta_Arf1_.cif (#51) relative to
    66170 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    66171 Matrix rotation and translation 
    66172 0.62745791 0.37612970 0.68177930 225.39126078 
    66173 -0.03718967 -0.86011531 0.50874215 253.06743887 
    66174 0.77776185 -0.34456943 -0.52569802 258.38364351 
    66175 Axis -0.89540639 -0.10071747 -0.43370887 
    66176 Axis point 0.00000000 129.60201318 43.61261413 
    66177 Rotation angle (degrees) 151.54332975 
    66178 Shift along axis -339.36836705 
    66179  
    66180 
    66181 > fitmap #51 inMap #1
    66182 
    66183 Fit molecule 20240711_copi_golph3_beta_Arf1_.cif (#51) to map
    66184 relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms 
    66185 average map value = 0.007965, steps = 44 
    66186 shifted from previous position = 0.00857 
    66187 rotated from previous position = 0.0157 degrees 
    66188 atoms outside contour = 587, contour level = 0.0058489 
    66189  
    66190 Position of 20240711_copi_golph3_beta_Arf1_.cif (#51) relative to
    66191 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    66192 Matrix rotation and translation 
    66193 0.62730945 0.37603713 0.68196696 225.39058721 
    66194 -0.03722893 -0.86021603 0.50856896 253.06736810 
    66195 0.77787972 -0.34441902 -0.52562219 258.39662102 
    66196 Axis -0.89536738 -0.10067804 -0.43379855 
    66197 Axis point 0.00000000 129.59805167 43.61433360 
    66198 Rotation angle (degrees) 151.55375336 
    66199 Shift along axis -339.37778698 
    66200  
    66201 
    66202 > fitmap #51 inMap #1
    66203 
    66204 Fit molecule 20240711_copi_golph3_beta_Arf1_.cif (#51) to map
    66205 relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms 
    66206 average map value = 0.007965, steps = 28 
    66207 shifted from previous position = 0.0306 
    66208 rotated from previous position = 0.0409 degrees 
    66209 atoms outside contour = 589, contour level = 0.0058489 
    66210  
    66211 Position of 20240711_copi_golph3_beta_Arf1_.cif (#51) relative to
    66212 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    66213 Matrix rotation and translation 
    66214 0.62735278 0.37558998 0.68217348 225.37506975 
    66215 -0.03793517 -0.86022217 0.50850638 253.03260293 
    66216 0.77781065 -0.34489126 -0.52541470 258.40373752 
    66217 Axis -0.89537305 -0.10034121 -0.43386489 
    66218 Axis point 0.00000000 129.63520070 43.58472205 
    66219 Rotation angle (degrees) 151.53904146 
    66220 Shift along axis -339.29667052 
    66221  
    66222 
    66223 > fitmap #51 inMap #1
    66224 
    66225 Fit molecule 20240711_copi_golph3_beta_Arf1_.cif (#51) to map
    66226 relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms 
    66227 average map value = 0.007965, steps = 40 
    66228 shifted from previous position = 0.0063 
    66229 rotated from previous position = 0.0343 degrees 
    66230 atoms outside contour = 589, contour level = 0.0058489 
    66231  
    66232 Position of 20240711_copi_golph3_beta_Arf1_.cif (#51) relative to
    66233 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    66234 Matrix rotation and translation 
    66235 0.62699890 0.37538872 0.68260947 225.35986129 
    66236 -0.03823037 -0.86035812 0.50825421 253.01464233 
    66237 0.77808150 -0.34477124 -0.52509235 258.42330346 
    66238 Axis -0.89527282 -0.10020043 -0.43410420 
    66239 Axis point 0.00000000 129.63081003 43.56565676 
    66240 Rotation angle (degrees) 151.54911088 
    66241 Shift along axis -339.29337407 
    66242  
    66243 
    66244 > volume #1 level 0.006237
    66245 
    66246 > hide #!1 models
    66247 
    66248 Drag select of 14 residues 
    66249 
    66250 > delete sel
    66251 
    66252 > fitmap #53 inMap #1
    66253 
    66254 Fit molecule 20240711_copi_golph3_third_Arf1.cif (#53) to map
    66255 relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms 
    66256 average map value = 0.006839, steps = 60 
    66257 shifted from previous position = 0.0556 
    66258 rotated from previous position = 0.867 degrees 
    66259 atoms outside contour = 667, contour level = 0.0062369 
    66260  
    66261 Position of 20240711_copi_golph3_third_Arf1.cif (#53) relative to
    66262 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    66263 Matrix rotation and translation 
    66264 0.73564428 0.66850898 0.10919360 227.56125236 
    66265 0.67445861 -0.70797958 -0.20945285 323.63792784 
    66266 -0.06271427 0.22772935 -0.97170276 187.16264710 
    66267 Axis 0.93056255 0.36591386 0.01266407 
    66268 Axis point 0.00000000 105.36896352 104.95840087 
    66269 Rotation angle (degrees) 166.41414785 
    66270 Shift along axis 332.55382421 
    66271  
    66272 
    66273 > fitmap #53 inMap #1
    66274 
    66275 Fit molecule 20240711_copi_golph3_third_Arf1.cif (#53) to map
    66276 relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms 
    66277 average map value = 0.006838, steps = 44 
    66278 shifted from previous position = 0.0062 
    66279 rotated from previous position = 0.0283 degrees 
    66280 atoms outside contour = 666, contour level = 0.0062369 
    66281  
    66282 Position of 20240711_copi_golph3_third_Arf1.cif (#53) relative to
    66283 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    66284 Matrix rotation and translation 
    66285 0.73571781 0.66850697 0.10870938 227.55121537 
    66286 0.67435081 -0.70809718 -0.20940241 323.63220049 
    66287 -0.06301016 0.22736934 -0.97176793 187.14580120 
    66288 Axis 0.93058458 0.36586515 0.01245087 
    66289 Axis point 0.00000000 105.38345388 104.96517112 
    66290 Rotation angle (degrees) 166.42747489 
    66291 Shift along axis 332.49152464 
    66292  
    66293 
    66294 > fitmap #53 inMap #1
    66295 
    66296 Fit molecule 20240711_copi_golph3_third_Arf1.cif (#53) to map
    66297 relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms 
    66298 average map value = 0.006838, steps = 40 
    66299 shifted from previous position = 0.0168 
    66300 rotated from previous position = 0.0486 degrees 
    66301 atoms outside contour = 665, contour level = 0.0062369 
    66302  
    66303 Position of 20240711_copi_golph3_third_Arf1.cif (#53) relative to
    66304 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    66305 Matrix rotation and translation 
    66306 0.73590946 0.66841543 0.10797257 227.53734802 
    66307 0.67407145 -0.70824781 -0.20979208 323.59975740 
    66308 -0.06375693 0.22716920 -0.97176602 187.10118130 
    66309 Axis 0.93063601 0.36574786 0.01204613 
    66310 Axis point 0.00000000 105.37700519 105.00023128 
    66311 Rotation angle (degrees) 166.42223682 
    66312 Shift along axis 332.36421596 
    66313  
    66314 
    66315 > fitmap #53 inMap #1
    66316 
    66317 Fit molecule 20240711_copi_golph3_third_Arf1.cif (#53) to map
    66318 relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms 
    66319 average map value = 0.006839, steps = 44 
    66320 shifted from previous position = 0.0167 
    66321 rotated from previous position = 0.0249 degrees 
    66322 atoms outside contour = 666, contour level = 0.0062369 
    66323  
    66324 Position of 20240711_copi_golph3_third_Arf1.cif (#53) relative to
    66325 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    66326 Matrix rotation and translation 
    66327 0.73578108 0.66850477 0.10829395 227.54808611 
    66328 0.67424697 -0.70815872 -0.20952865 323.62383235 
    66329 -0.06338160 0.22718408 -0.97178710 187.12517723 
    66330 Axis 0.93060214 0.36582774 0.01223620 
    66331 Axis point 0.00000000 105.38408978 104.98039973 
    66332 Rotation angle (degrees) 166.42960463 
    66333 Shift along axis 332.43701163 
    66334  
    66335 
    66336 > show #!1 models
    66337 
    66338 > show #52 models
    66339 
    66340 > hide #!1 models
    66341 
    66342 Drag select of 12 residues 
    66343 
    66344 > select up
    66345 
    66346 103 atoms, 105 bonds, 13 residues, 1 model selected 
    66347 
    66348 > delete sel
    66349 
    66350 Drag select of 1 residues 
    66351 
    66352 > delete sel
    66353 
    66354 > fitmap #52 inMap #1
    66355 
    66356 Fit molecule 20240711_copi_golph3_gamma_Arf1_.cif (#52) to map
    66357 relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms 
    66358 average map value = 0.01044, steps = 96 
    66359 shifted from previous position = 0.0478 
    66360 rotated from previous position = 1.37 degrees 
    66361 atoms outside contour = 447, contour level = 0.0062369 
    66362  
    66363 Position of 20240711_copi_golph3_gamma_Arf1_.cif (#52) relative to
    66364 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    66365 Matrix rotation and translation 
    66366 -0.55739175 0.36533697 -0.74554901 335.06611515 
    66367 0.54035502 0.84139599 0.00832090 166.90426300 
    66368 0.63034189 -0.39822315 -0.66639885 272.90142887 
    66369 Axis -0.28128070 -0.95195479 0.12109191 
    66370 Axis point 75.64388097 0.00000000 208.37368288 
    66371 Rotation angle (degrees) 133.72496068 
    66372 Shift along axis -220.08678665 
    66373  
    66374 
    66375 > fitmap #52 inMap #1
    66376 
    66377 Fit molecule 20240711_copi_golph3_gamma_Arf1_.cif (#52) to map
    66378 relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms 
    66379 average map value = 0.01044, steps = 64 
    66380 shifted from previous position = 0.0226 
    66381 rotated from previous position = 0.0378 degrees 
    66382 atoms outside contour = 443, contour level = 0.0062369 
    66383  
    66384 Position of 20240711_copi_golph3_gamma_Arf1_.cif (#52) relative to
    66385 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    66386 Matrix rotation and translation 
    66387 -0.55693555 0.36555126 -0.74578487 335.05111132 
    66388 0.54036894 0.84138141 0.00887302 166.86167507 
    66389 0.63073307 -0.39805728 -0.66612776 272.87607279 
    66390 Axis -0.28141528 -0.95193988 0.12089630 
    66391 Axis point 75.59745709 0.00000000 208.37065311 
    66392 Rotation angle (degrees) 133.69671413 
    66393 Shift along axis -220.14107742 
    66394  
    66395 
    66396 > show #!1 models
    66397 
    66398 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    66399 > dataset/Chimera sessions/20240805_leaf_fitting_AF3_update_v1.cxs"
    66400 
    66401 > hide #51 models
    66402 
    66403 > hide #52 models
    66404 
    66405 > hide #53 models
    66406 
    66407 > show #50 models
    66408 
    66409 > hide #50 models
    66410 
    66411 > show #50 models
    66412 
    66413 > hide #50 models
    66414 
    66415 > combine #34.1
    66416 
    66417 [Repeated 1 time(s)]
    66418 
    66419 > rename #54 "20240711_copi_golph3_model_0.cif A"
    66420 
    66421 > rename #54 "20240711_copi_golph3_golph3_M1-.cif A"
    66422 
    66423 > rename #55 20240711_copi_golph3_golph3_.cif
    66424 
    66425 > rename #54 20240711_copi_golph3_golph3_M1-.cif
    66426 
    66427 > hide #55 models
    66428 
    66429 > show #55 models
    66430 
    66431 > hide #55 models
    66432 
    66433 > show #!45 models
    66434 
    66435 > show #!44 models
    66436 
    66437 > show #!43 models
    66438 
    66439 > show #!40 models
    66440 
    66441 > hide #!1 models
    66442 
    66443 > show #55 models
    66444 
    66445 > hide #55 models
    66446 
    66447 > show #55 models
    66448 
    66449 > hide #55 models
    66450 
    66451 Drag select of 197 residues 
    66452 
    66453 > select up
    66454 
    66455 1963 atoms, 1993 bonds, 243 residues, 1 model selected 
    66456 
    66457 > delete sel
    66458 
    66459 Drag select of 2 residues, 1 pseudobonds 
    66460 
    66461 > delete sel
    66462 
    66463 > select add #54
    66464 
    66465 392 atoms, 391 bonds, 53 residues, 1 model selected 
    66466 
    66467 > select subtract #54
    66468 
    66469 Nothing selected 
    66470 
    66471 > select add #54
    66472 
    66473 392 atoms, 391 bonds, 53 residues, 1 model selected 
    66474 
    66475 > select subtract #54
    66476 
    66477 Nothing selected 
    66478 
    66479 > hide #!54 models
    66480 
    66481 > hide #!45 models
    66482 
    66483 > show #!45 models
    66484 
    66485 > hide #!45 models
    66486 
    66487 > hide #!44 models
    66488 
    66489 > hide #!43 models
    66490 
    66491 > show #!43 models
    66492 
    66493 > hide #!43 models
    66494 
    66495 > show #!43 models
    66496 
    66497 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    66498 > dataset/Chimera sessions/20240805_leaf_fitting_AF3_update_v1.cxs"
    66499 
    66500 > ui tool show Matchmaker
    66501 
    66502 The cached device pixel ratio value was stale on window expose. Please file a
    66503 QTBUG which explains how to reproduce. 
    66504 
    66505 > matchmaker #!40 to #43
    66506 
    66507 Parameters 
    66508 --- 
    66509 Chain pairing | bb 
    66510 Alignment algorithm | Needleman-Wunsch 
    66511 Similarity matrix | BLOSUM-62 
    66512 SS fraction | 0.3 
    66513 Gap open (HH/SS/other) | 18/18/6 
    66514 Gap extend | 1 
    66515 SS matrix |  |  | H | S | O 
    66516 ---|---|---|--- 
    66517 H | 6 | -9 | -6 
    66518 S |  | 6 | -6 
    66519 O |  |  | 4 
    66520 Iteration cutoff | 2 
    66521  
    66522 Matchmaker 20240711_copi_golph3_beta_S711-L953.cif, chain E (#43) with
    66523 fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain B (#40), sequence
    66524 alignment score = 3704.9 
    66525 RMSD between 224 pruned atom pairs is 1.090 angstroms; (across all 243 pairs:
    66526 1.912) 
    66527  
    66528 
    66529 > show #!54 models
    66530 
    66531 > hide #!40 models
    66532 
    66533 > show #!40 models
    66534 
    66535 > hide #!40 models
    66536 
    66537 > show #!40 models
    66538 
    66539 > select add #40
    66540 
    66541 39508 atoms, 40254 bonds, 5000 residues, 1 model selected 
    66542 Drag select of 3 residues 
    66543 
    66544 > select add #40
    66545 
    66546 39524 atoms, 40254 bonds, 5002 residues, 3 models selected 
    66547 
    66548 > ui mousemode right "translate selected models"
    66549 
    66550 > view matrix models
    66551 > #40,-0.63005,0.76404,0.13884,282.83,0.76732,0.64002,-0.040012,341.37,-0.11943,0.081328,-0.98951,347.6,#54,0.53204,0.47156,0.70325,293.71,0.013564,-0.8352,0.54978,332.87,0.84661,-0.28297,-0.45076,340.97
    66552 
    66553 > view matrix models
    66554 > #40,-0.63005,0.76404,0.13884,284.05,0.76732,0.64002,-0.040012,341.21,-0.11943,0.081328,-0.98951,346.63,#54,0.53204,0.47156,0.70325,294.93,0.013564,-0.8352,0.54978,332.72,0.84661,-0.28297,-0.45076,339.99
    66555 
    66556 > ui mousemode right "rotate selected models"
    66557 
    66558 > view matrix models
    66559 > #40,-0.43737,0.7871,0.43495,284.57,0.88971,0.44911,0.081929,343.29,-0.13085,0.42281,-0.89672,343.66,#54,0.2348,0.40499,0.88366,295.58,-0.22418,-0.862,0.45463,333.83,0.94584,-0.30485,-0.11161,338.75
    66560 
    66561 > hide #!43 models
    66562 
    66563 > select subtract #40
    66564 
    66565 16 atoms, 2 residues, 3 models selected 
    66566 
    66567 > select add #40
    66568 
    66569 39524 atoms, 40254 bonds, 5002 residues, 2 models selected 
    66570 
    66571 > show #!43 models
    66572 
    66573 > hide #!43 models
    66574 
    66575 > show #!43 models
    66576 
    66577 > ui tool show Matchmaker
    66578 
    66579 > matchmaker #!40 to #43
    66580 
    66581 Parameters 
    66582 --- 
    66583 Chain pairing | bb 
    66584 Alignment algorithm | Needleman-Wunsch 
    66585 Similarity matrix | BLOSUM-62 
    66586 SS fraction | 0.3 
    66587 Gap open (HH/SS/other) | 18/18/6 
    66588 Gap extend | 1 
    66589 SS matrix |  |  | H | S | O 
    66590 ---|---|---|--- 
    66591 H | 6 | -9 | -6 
    66592 S |  | 6 | -6 
    66593 O |  |  | 4 
    66594 Iteration cutoff | 2 
    66595  
    66596 Matchmaker 20240711_copi_golph3_beta_S711-L953.cif, chain E (#43) with
    66597 fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain B (#40), sequence
    66598 alignment score = 3704.9 
    66599 RMSD between 224 pruned atom pairs is 1.090 angstroms; (across all 243 pairs:
    66600 1.912) 
    66601  
    66602 
    66603 > select subtract #40
    66604 
    66605 16 atoms, 2 residues, 3 models selected 
    66606 
    66607 > select add #54
    66608 
    66609 392 atoms, 391 bonds, 53 residues, 1 model selected 
    66610 
    66611 > select subtract #54
    66612 
    66613 Nothing selected 
    66614 
    66615 > select add #54
    66616 
    66617 392 atoms, 391 bonds, 53 residues, 1 model selected 
    66618 
    66619 > ui tool show Matchmaker
    66620 
    66621 The cached device pixel ratio value was stale on window expose. Please file a
    66622 QTBUG which explains how to reproduce. 
    66623 
    66624 > matchmaker #!54 to #40
    66625 
    66626 Parameters 
    66627 --- 
    66628 Chain pairing | bb 
    66629 Alignment algorithm | Needleman-Wunsch 
    66630 Similarity matrix | BLOSUM-62 
    66631 SS fraction | 0.3 
    66632 Gap open (HH/SS/other) | 18/18/6 
    66633 Gap extend | 1 
    66634 SS matrix |  |  | H | S | O 
    66635 ---|---|---|--- 
    66636 H | 6 | -9 | -6 
    66637 S |  | 6 | -6 
    66638 O |  |  | 4 
    66639 Iteration cutoff | 2 
    66640  
    66641 Matchmaker fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain H (#40)
    66642 with 20240711_copi_golph3_golph3_M1-.cif, chain A (#54), sequence alignment
    66643 score = 198 
    66644 RMSD between 18 pruned atom pairs is 0.685 angstroms; (across all 47 pairs:
    66645 13.519) 
    66646  
    66647 
    66648 > view matrix models
    66649 > #54,-0.7223,0.66641,-0.1849,309.42,-0.25424,-0.5045,-0.82513,354.87,-0.64316,-0.54898,0.53382,337.9
    66650 
    66651 > view matrix models
    66652 > #54,0.28193,0.78651,0.54948,302.7,-0.88272,-0.011762,0.46975,337.54,0.37592,-0.61747,0.69095,338.3
    66653 
    66654 > ui mousemode right "translate selected models"
    66655 
    66656 > view matrix models
    66657 > #54,0.28193,0.78651,0.54948,304.53,-0.88272,-0.011762,0.46975,356.14,0.37592,-0.61747,0.69095,316.77
    66658 
    66659 > ui mousemode right select
    66660 
    66661 > select subtract #54
    66662 
    66663 Nothing selected 
    66664 Drag select of 22 residues 
    66665 
    66666 > delete sel
    66667 
    66668 > ui tool show Matchmaker
    66669 
    66670 The cached device pixel ratio value was stale on window expose. Please file a
    66671 QTBUG which explains how to reproduce. 
    66672 
    66673 > matchmaker #!54 to #40
    66674 
    66675 Parameters 
    66676 --- 
    66677 Chain pairing | bb 
    66678 Alignment algorithm | Needleman-Wunsch 
    66679 Similarity matrix | BLOSUM-62 
    66680 SS fraction | 0.3 
    66681 Gap open (HH/SS/other) | 18/18/6 
    66682 Gap extend | 1 
    66683 SS matrix |  |  | H | S | O 
    66684 ---|---|---|--- 
    66685 H | 6 | -9 | -6 
    66686 S |  | 6 | -6 
    66687 O |  |  | 4 
    66688 Iteration cutoff | 2 
    66689  
    66690 Matchmaker fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain H (#40)
    66691 with 20240711_copi_golph3_golph3_M1-.cif, chain A (#54), sequence alignment
    66692 score = 188.4 
    66693 RMSD between 13 pruned atom pairs is 1.080 angstroms; (across all 31 pairs:
    66694 10.676) 
    66695  
    66696 
    66697 > hide #!54 models
    66698 
    66699 > show #!54 models
    66700 
    66701 > hide #!54 models
    66702 
    66703 > show #!54 models
    66704 
    66705 > show #!1 models
    66706 
    66707 > hide #!40 models
    66708 
    66709 > volume #1 level 0.005461
    66710 
    66711 > hide #!1 models
    66712 
    66713 > fitmap #54 inMap #1
    66714 
    66715 Fit molecule 20240711_copi_golph3_golph3_M1-.cif (#54) to map
    66716 relion_locres_filtered_20240326_GT.mrc (#1) using 229 atoms 
    66717 average map value = 0.01065, steps = 468 
    66718 shifted from previous position = 13.9 
    66719 rotated from previous position = 160 degrees 
    66720 atoms outside contour = 75, contour level = 0.0054608 
    66721  
    66722 Position of 20240711_copi_golph3_golph3_M1-.cif (#54) relative to
    66723 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    66724 Matrix rotation and translation 
    66725 0.50958231 0.51380053 0.69017018 237.15892878 
    66726 -0.26830832 0.85702309 -0.43991143 297.92467750 
    66727 -0.81751851 0.03899268 0.57458077 262.58133868 
    66728 Axis 0.27137979 0.85435943 -0.44319632 
    66729 Axis point 414.93124846 0.00000000 30.84815820 
    66730 Rotation angle (degrees) 61.92719804 
    66731 Shift along axis 202.51981387 
    66732  
    66733 
    66734 > show #!40 models
    66735 
    66736 > hide #!54 models
    66737 
    66738 > hide #!43 models
    66739 
    66740 > hide #!40 models
    66741 
    66742 > show #!43 models
    66743 
    66744 > show #!40 models
    66745 
    66746 > hide #!43 models
    66747 
    66748 > hide #!40 models
    66749 
    66750 > show #!44 models
    66751 
    66752 > show #!43 models
    66753 
    66754 > hide #!44 models
    66755 
    66756 > show #!54 models
    66757 
    66758 > ui mousemode right "translate selected models"
    66759 
    66760 > show #!1 models
    66761 
    66762 > select add #54
    66763 
    66764 229 atoms, 228 bonds, 31 residues, 1 model selected 
    66765 
    66766 > ui mousemode right "rotate selected models"
    66767 
    66768 > view matrix models
    66769 > #54,0.53997,0.59854,0.59176,294.71,-0.11296,-0.64517,0.75564,334.85,0.83407,-0.47487,-0.28076,338.78
    66770 
    66771 > view matrix models
    66772 > #54,0.65695,0.31239,0.68617,291.47,-0.33645,-0.693,0.63761,335.1,0.6747,-0.64974,-0.35016,337.55
    66773 
    66774 > hide #!1 models
    66775 
    66776 > view matrix models
    66777 > #54,0.22732,0.11704,0.96676,286.7,-0.70153,-0.66886,0.24592,338.13,0.67541,-0.73412,-0.069938,334.41
    66778 
    66779 > ui tool show Matchmaker
    66780 
    66781 The cached device pixel ratio value was stale on window expose. Please file a
    66782 QTBUG which explains how to reproduce. 
    66783 
    66784 > matchmaker #!54 to #40
    66785 
    66786 Parameters 
    66787 --- 
    66788 Chain pairing | bb 
    66789 Alignment algorithm | Needleman-Wunsch 
    66790 Similarity matrix | BLOSUM-62 
    66791 SS fraction | 0.3 
    66792 Gap open (HH/SS/other) | 18/18/6 
    66793 Gap extend | 1 
    66794 SS matrix |  |  | H | S | O 
    66795 ---|---|---|--- 
    66796 H | 6 | -9 | -6 
    66797 S |  | 6 | -6 
    66798 O |  |  | 4 
    66799 Iteration cutoff | 2 
    66800  
    66801 Matchmaker fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain H (#40)
    66802 with 20240711_copi_golph3_golph3_M1-.cif, chain A (#54), sequence alignment
    66803 score = 188.4 
    66804 RMSD between 13 pruned atom pairs is 1.080 angstroms; (across all 31 pairs:
    66805 10.676) 
    66806  
    66807 
    66808 > select subtract #54
    66809 
    66810 Nothing selected 
    66811 
    66812 > show #!1 models
    66813 
    66814 > show #!40 models
    66815 
    66816 > hide #!1 models
    66817 
    66818 > hide #!40 models
    66819 
    66820 > show #!40 models
    66821 
    66822 > hide #!43 models
    66823 
    66824 > ui mousemode right select
    66825 
    66826 Drag select of 3 residues 
    66827 
    66828 > select up
    66829 
    66830 99 atoms, 98 bonds, 14 residues, 2 models selected 
    66831 
    66832 > select clear
    66833 
    66834 Drag select of 19 residues 
    66835 
    66836 > select up
    66837 
    66838 163 atoms, 162 bonds, 22 residues, 2 models selected 
    66839 
    66840 > delete sel
    66841 
    66842 > show #!43 models
    66843 
    66844 > hide #!43 models
    66845 
    66846 > show #!43 models
    66847 
    66848 > hide #!43 models
    66849 
    66850 > show #!43 models
    66851 
    66852 > ui tool show Matchmaker
    66853 
    66854 The cached device pixel ratio value was stale on window expose. Please file a
    66855 QTBUG which explains how to reproduce. 
    66856 
    66857 > matchmaker #!40 to #43
    66858 
    66859 Parameters 
    66860 --- 
    66861 Chain pairing | bb 
    66862 Alignment algorithm | Needleman-Wunsch 
    66863 Similarity matrix | BLOSUM-62 
    66864 SS fraction | 0.3 
    66865 Gap open (HH/SS/other) | 18/18/6 
    66866 Gap extend | 1 
    66867 SS matrix |  |  | H | S | O 
    66868 ---|---|---|--- 
    66869 H | 6 | -9 | -6 
    66870 S |  | 6 | -6 
    66871 O |  |  | 4 
    66872 Iteration cutoff | 2 
    66873  
    66874 Matchmaker 20240711_copi_golph3_beta_S711-L953.cif, chain E (#43) with
    66875 fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain B (#40), sequence
    66876 alignment score = 3682.1 
    66877 RMSD between 205 pruned atom pairs is 1.038 angstroms; (across all 221 pairs:
    66878 1.606) 
    66879  
    66880 
    66881 > hide #!43 models
    66882 
    66883 Drag select of 7 residues 
    66884 
    66885 > select up
    66886 
    66887 7344 atoms, 7463 bonds, 931 residues, 2 models selected 
    66888 
    66889 > select down
    66890 
    66891 60 atoms, 7 residues, 2 models selected 
    66892 
    66893 > delete sel
    66894 
    66895 > show #!43 models
    66896 
    66897 > hide #!40 models
    66898 
    66899 > show #!40 models
    66900 
    66901 > hide #!43 models
    66902 
    66903 > show #!43 models
    66904 
    66905 > hide #!43 models
    66906 
    66907 Drag select of 9 residues 
    66908 
    66909 > select up
    66910 
    66911 170 atoms, 172 bonds, 21 residues, 2 models selected 
    66912 
    66913 > delete sel
    66914 
    66915 > ui tool show Matchmaker
    66916 
    66917 The cached device pixel ratio value was stale on window expose. Please file a
    66918 QTBUG which explains how to reproduce. 
    66919 
    66920 > matchmaker #!40 to #43
    66921 
    66922 Parameters 
    66923 --- 
    66924 Chain pairing | bb 
    66925 Alignment algorithm | Needleman-Wunsch 
    66926 Similarity matrix | BLOSUM-62 
    66927 SS fraction | 0.3 
    66928 Gap open (HH/SS/other) | 18/18/6 
    66929 Gap extend | 1 
    66930 SS matrix |  |  | H | S | O 
    66931 ---|---|---|--- 
    66932 H | 6 | -9 | -6 
    66933 S |  | 6 | -6 
    66934 O |  |  | 4 
    66935 Iteration cutoff | 2 
    66936  
    66937 Matchmaker 20240711_copi_golph3_beta_S711-L953.cif, chain E (#43) with
    66938 fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain B (#40), sequence
    66939 alignment score = 3640.1 
    66940 RMSD between 175 pruned atom pairs is 0.948 angstroms; (across all 193 pairs:
    66941 1.612) 
    66942  
    66943 
    66944 > show #!43 models
    66945 
    66946 > hide #!43 models
    66947 
    66948 Drag select of 5 residues 
    66949 
    66950 > select up
    66951 
    66952 63 atoms, 64 bonds, 9 residues, 2 models selected 
    66953 
    66954 > delete sel
    66955 
    66956 > select #40/B:914
    66957 
    66958 7 atoms, 7 bonds, 1 residue, 1 model selected 
    66959 
    66960 > delete sel
    66961 
    66962 > select #40/B:912
    66963 
    66964 9 atoms, 8 bonds, 1 residue, 1 model selected 
    66965 
    66966 > select #40/B:913
    66967 
    66968 9 atoms, 8 bonds, 1 residue, 1 model selected 
    66969 
    66970 > delete sel
    66971 
    66972 Drag select of 13 residues 
    66973 
    66974 > select up
    66975 
    66976 207 atoms, 209 bonds, 26 residues, 2 models selected 
    66977 
    66978 > delete sel
    66979 
    66980 Drag select of 6 residues 
    66981 
    66982 > select up
    66983 
    66984 63 atoms, 63 bonds, 9 residues, 2 models selected 
    66985 
    66986 > delete sel
    66987 
    66988 > ui tool show Matchmaker
    66989 
    66990 > show #!43 models
    66991 
    66992 The cached device pixel ratio value was stale on window expose. Please file a
    66993 QTBUG which explains how to reproduce. 
    66994 
    66995 > hide #!43 models
    66996 
    66997 > show #!43 models
    66998 
    66999 > matchmaker #!40 to #43
    67000 
    67001 Parameters 
    67002 --- 
    67003 Chain pairing | bb 
    67004 Alignment algorithm | Needleman-Wunsch 
    67005 Similarity matrix | BLOSUM-62 
    67006 SS fraction | 0.3 
    67007 Gap open (HH/SS/other) | 18/18/6 
    67008 Gap extend | 1 
    67009 SS matrix |  |  | H | S | O 
    67010 ---|---|---|--- 
    67011 H | 6 | -9 | -6 
    67012 S |  | 6 | -6 
    67013 O |  |  | 4 
    67014 Iteration cutoff | 2 
    67015  
    67016 Matchmaker 20240711_copi_golph3_beta_S711-L953.cif, chain E (#43) with
    67017 fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain B (#40), sequence
    67018 alignment score = 3556.1 
    67019 RMSD between 139 pruned atom pairs is 0.782 angstroms; (across all 147 pairs:
    67020 1.500) 
    67021  
    67022 
    67023 > select add #40
    67024 
    67025 38766 atoms, 39496 bonds, 3 pseudobonds, 4904 residues, 2 models selected 
    67026 
    67027 > ui mousemode right "translate selected models"
    67028 
    67029 > view matrix models
    67030 > #40,-0.66043,0.73847,0.13602,283.55,0.7459,0.66603,0.0056796,340.95,-0.0864,0.10521,-0.99069,347.42
    67031 
    67032 > ui mousemode right "rotate selected models"
    67033 
    67034 > view matrix models
    67035 > #40,-0.75937,0.64372,0.09483,283.83,0.63647,0.76515,-0.097246,338.49,-0.13516,-0.013489,-0.99073,348.53
    67036 
    67037 > ui mousemode right "translate selected models"
    67038 
    67039 > view matrix models
    67040 > #40,-0.75937,0.64372,0.09483,283.83,0.63647,0.76515,-0.097246,338.96,-0.13516,-0.013489,-0.99073,347.45
    67041 
    67042 > view matrix models
    67043 > #40,-0.75937,0.64372,0.09483,286.4,0.63647,0.76515,-0.097246,338.89,-0.13516,-0.013489,-0.99073,347.57
    67044 
    67045 > ui mousemode right "rotate selected models"
    67046 
    67047 > view matrix models
    67048 > #40,-0.53707,0.84336,-0.017352,284.75,0.82966,0.52441,-0.19145,342.43,-0.15236,-0.11722,-0.98135,348.76
    67049 
    67050 > view matrix models
    67051 > #40,-0.7265,0.67539,-0.1267,284.95,0.66634,0.64734,-0.37007,338.91,-0.16792,-0.35327,-0.92033,351.84
    67052 
    67053 > view matrix models
    67054 > #40,-0.52618,0.83563,-0.15768,284.1,0.8447,0.49222,-0.21024,342.8,-0.09807,-0.24381,-0.96485,350.71
    67055 
    67056 > view matrix models
    67057 > #40,-0.55523,0.74609,-0.36752,283.79,0.81558,0.40187,-0.41632,342.51,-0.16292,-0.5309,-0.83163,354.51
    67058 
    67059 > view matrix models
    67060 > #40,-0.59018,0.77596,0.22264,286.61,0.78627,0.61504,-0.059293,341.84,-0.18294,0.14006,-0.9731,345.54
    67061 
    67062 > view matrix models
    67063 > #40,-0.56806,0.78726,0.23987,286.71,0.8054,0.59172,-0.034679,342.38,-0.16924,0.17349,-0.97019,345.24
    67064 
    67065 > ui mousemode right "translate selected models"
    67066 
    67067 > view matrix models
    67068 > #40,-0.56806,0.78726,0.23987,284.52,0.8054,0.59172,-0.034679,341.56,-0.16924,0.17349,-0.97019,347.55
    67069 
    67070 > view matrix models
    67071 > #40,-0.56806,0.78726,0.23987,283.34,0.8054,0.59172,-0.034679,342.14,-0.16924,0.17349,-0.97019,346.83
    67072 
    67073 > select subtract #40
    67074 
    67075 2 models selected 
    67076 
    67077 > ui tool show Matchmaker
    67078 
    67079 The cached device pixel ratio value was stale on window expose. Please file a
    67080 QTBUG which explains how to reproduce. 
    67081 
    67082 > matchmaker #!54 to #40
    67083 
    67084 Parameters 
    67085 --- 
    67086 Chain pairing | bb 
    67087 Alignment algorithm | Needleman-Wunsch 
    67088 Similarity matrix | BLOSUM-62 
    67089 SS fraction | 0.3 
    67090 Gap open (HH/SS/other) | 18/18/6 
    67091 Gap extend | 1 
    67092 SS matrix |  |  | H | S | O 
    67093 ---|---|---|--- 
    67094 H | 6 | -9 | -6 
    67095 S |  | 6 | -6 
    67096 O |  |  | 4 
    67097 Iteration cutoff | 2 
    67098  
    67099 Matchmaker fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif, chain H (#40)
    67100 with 20240711_copi_golph3_golph3_M1-.cif, chain A (#54), sequence alignment
    67101 score = 188.4 
    67102 RMSD between 13 pruned atom pairs is 1.080 angstroms; (across all 31 pairs:
    67103 10.676) 
    67104  
    67105 
    67106 > hide #!40 models
    67107 
    67108 > show #!40 models
    67109 
    67110 > hide #!40 models
    67111 
    67112 > show #!40 models
    67113 
    67114 > hide #!40 models
    67115 
    67116 > show #!40 models
    67117 
    67118 > hide #!40 models
    67119 
    67120 > show #!40 models
    67121 
    67122 > hide #!40 models
    67123 
    67124 > show #!40 models
    67125 
    67126 > hide #!40 models
    67127 
    67128 > show #!1 models
    67129 
    67130 > hide #!1 models
    67131 
    67132 > show #55 models
    67133 
    67134 > hide #!54 models
    67135 
    67136 > show #!54 models
    67137 
    67138 > hide #!54 models
    67139 
    67140 > show #!1 models
    67141 
    67142 > hide #!1 models
    67143 
    67144 > hide #!43 models
    67145 
    67146 > ui mousemode right select
    67147 
    67148 Drag select of 18 residues 
    67149 
    67150 > select up
    67151 
    67152 225 atoms, 224 bonds, 30 residues, 1 model selected 
    67153 
    67154 > delete sel
    67155 
    67156 Drag select of 21 residues 
    67157 
    67158 > select up
    67159 
    67160 167 atoms, 166 bonds, 23 residues, 1 model selected 
    67161 
    67162 > delete sel
    67163 
    67164 > select #55/A:54
    67165 
    67166 8 atoms, 7 bonds, 1 residue, 1 model selected 
    67167 
    67168 > delete sel
    67169 
    67170 > show #!1 models
    67171 
    67172 > fitmap #55 inMap #1
    67173 
    67174 Fit molecule 20240711_copi_golph3_golph3_.cif (#55) to map
    67175 relion_locres_filtered_20240326_GT.mrc (#1) using 1971 atoms 
    67176 average map value = 0.008364, steps = 44 
    67177 shifted from previous position = 0.155 
    67178 rotated from previous position = 0.745 degrees 
    67179 atoms outside contour = 620, contour level = 0.0054608 
    67180  
    67181 Position of 20240711_copi_golph3_golph3_.cif (#55) relative to
    67182 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67183 Matrix rotation and translation 
    67184 0.52149365 0.47001719 0.71212935 230.49002012 
    67185 0.01135098 -0.83835072 0.54501305 257.47176105 
    67186 0.85317966 -0.27613748 -0.44252974 262.84155594 
    67187 Axis -0.86338510 -0.14830501 -0.48225698 
    67188 Axis point -0.00000000 121.73438799 37.23458310 
    67189 Rotation angle (degrees) 151.60540101 
    67190 Shift along axis -363.94317469 
    67191  
    67192 
    67193 > fitmap #55 inMap #1
    67194 
    67195 Fit molecule 20240711_copi_golph3_golph3_.cif (#55) to map
    67196 relion_locres_filtered_20240326_GT.mrc (#1) using 1971 atoms 
    67197 average map value = 0.008363, steps = 40 
    67198 shifted from previous position = 0.0326 
    67199 rotated from previous position = 0.0372 degrees 
    67200 atoms outside contour = 617, contour level = 0.0054608 
    67201  
    67202 Position of 20240711_copi_golph3_golph3_.cif (#55) relative to
    67203 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67204 Matrix rotation and translation 
    67205 0.52173357 0.47042314 0.71168543 230.53965220 
    67206 0.01161038 -0.83806431 0.54544790 257.46018997 
    67207 0.85302947 -0.27631555 -0.44270808 262.85484380 
    67208 Axis -0.86344537 -0.14851337 -0.48208491 
    67209 Axis point 0.00000000 121.71304452 37.24831631 
    67210 Rotation angle (degrees) 151.58444406 
    67211 Shift along axis -364.01303162 
    67212  
    67213 
    67214 > hide #!1 models
    67215 
    67216 > show #!54 models
    67217 
    67218 > show #!43 models
    67219 
    67220 > show #34.1 models
    67221 
    67222 > hide #!43 models
    67223 
    67224 > show #41 models
    67225 
    67226 > show #!43 models
    67227 
    67228 > show #!44 models
    67229 
    67230 > show #42 models
    67231 
    67232 > show #39 models
    67233 
    67234 > show #38 models
    67235 
    67236 > show #!45 models
    67237 
    67238 > show #46 models
    67239 
    67240 > show #47 models
    67241 
    67242 > show #48 models
    67243 
    67244 > show #!49 models
    67245 
    67246 > show #50 models
    67247 
    67248 > show #51 models
    67249 
    67250 > show #52 models
    67251 
    67252 > show #53 models
    67253 
    67254 > show #!1 models
    67255 
    67256 > hide #34.1 models
    67257 
    67258 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    67259 > dataset/Chimera sessions/20240805_leaf_fitting_AF3_update_v2.cxs"
    67260 
    67261 > hide #41 models
    67262 
    67263 > hide #42 models
    67264 
    67265 > hide #!43 models
    67266 
    67267 > hide #!44 models
    67268 
    67269 > hide #!45 models
    67270 
    67271 > hide #46 models
    67272 
    67273 > hide #47 models
    67274 
    67275 > hide #48 models
    67276 
    67277 > hide #!49 models
    67278 
    67279 > hide #50 models
    67280 
    67281 > hide #51 models
    67282 
    67283 > hide #53 models
    67284 
    67285 > hide #52 models
    67286 
    67287 > hide #!54 models
    67288 
    67289 > hide #55 models
    67290 
    67291 > hide #!1 models
    67292 
    67293 Drag select of 10 residues 
    67294 
    67295 > select up
    67296 
    67297 74 atoms, 75 bonds, 11 residues, 1 model selected 
    67298 
    67299 > delete sel
    67300 
    67301 > hide #39 models
    67302 
    67303 > show #39 models
    67304 
    67305 > hide #38 models
    67306 
    67307 > fitmap #39 inMap #1
    67308 
    67309 Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map
    67310 relion_locres_filtered_20240326_GT.mrc (#1) using 2329 atoms 
    67311 average map value = 0.00752, steps = 44 
    67312 shifted from previous position = 0.0203 
    67313 rotated from previous position = 0.018 degrees 
    67314 atoms outside contour = 1192, contour level = 0.0054608 
    67315  
    67316 Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to
    67317 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67318 Matrix rotation and translation 
    67319 0.58557972 0.32386603 0.74310644 225.70705057 
    67320 -0.13511522 -0.86489862 0.48341933 254.83102732 
    67321 0.79927484 -0.38348555 -0.46270787 264.72353564 
    67322 Axis -0.88232925 -0.05716777 -0.46714766 
    67323 Axis point 0.00000000 136.04140665 37.56516457 
    67324 Rotation angle (degrees) 150.57661567 
    67325 Shift along axis -337.38103518 
    67326  
    67327 Drag select of 9 residues 
    67328 
    67329 > delete sel
    67330 
    67331 > fitmap #39 inMap #1
    67332 
    67333 Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map
    67334 relion_locres_filtered_20240326_GT.mrc (#1) using 2256 atoms 
    67335 average map value = 0.007692, steps = 44 
    67336 shifted from previous position = 0.0477 
    67337 rotated from previous position = 0.0822 degrees 
    67338 atoms outside contour = 1123, contour level = 0.0054608 
    67339  
    67340 Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to
    67341 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67342 Matrix rotation and translation 
    67343 0.58606274 0.32257416 0.74328755 225.67480968 
    67344 -0.13550295 -0.86540137 0.48241001 254.81278925 
    67345 0.79885507 -0.38344018 -0.46346975 264.68459062 
    67346 Axis -0.88250171 -0.05663616 -0.46688658 
    67347 Axis point 0.00000000 136.09588960 37.63718480 
    67348 Rotation angle (degrees) 150.62222794 
    67349 Shift along axis -337.16770619 
    67350  
    67351 
    67352 > fitmap #39 inMap #1
    67353 
    67354 Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map
    67355 relion_locres_filtered_20240326_GT.mrc (#1) using 2256 atoms 
    67356 average map value = 0.007693, steps = 44 
    67357 shifted from previous position = 0.036 
    67358 rotated from previous position = 0.0445 degrees 
    67359 atoms outside contour = 1120, contour level = 0.0054608 
    67360  
    67361 Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to
    67362 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67363 Matrix rotation and translation 
    67364 0.58571763 0.32326751 0.74325835 225.67941678 
    67365 -0.13520957 -0.86519945 0.48285431 254.80826181 
    67366 0.79915782 -0.38331193 -0.46305371 264.72109065 
    67367 Axis -0.88238808 -0.05694638 -0.46706358 
    67368 Axis point 0.00000000 136.05210514 37.61678218 
    67369 Rotation angle (degrees) 150.60629759 
    67370 Shift along axis -337.28881532 
    67371  
    67372 
    67373 > fitmap #39 inMap #1
    67374 
    67375 Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map
    67376 relion_locres_filtered_20240326_GT.mrc (#1) using 2256 atoms 
    67377 average map value = 0.007693, steps = 48 
    67378 shifted from previous position = 0.0158 
    67379 rotated from previous position = 0.0402 degrees 
    67380 atoms outside contour = 1121, contour level = 0.0054608 
    67381  
    67382 Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to
    67383 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67384 Matrix rotation and translation 
    67385 0.58587561 0.32288083 0.74330191 225.68344466 
    67386 -0.13585522 -0.86509142 0.48286664 254.79486458 
    67387 0.79893249 -0.38388123 -0.46297092 264.71592302 
    67388 Axis -0.88242423 -0.05663674 -0.46703294 
    67389 Axis point 0.00000000 136.10226685 37.58138913 
    67390 Rotation angle (degrees) 150.58594517 
    67391 Shift along axis -337.21034398 
    67392  
    67393 
    67394 > fitmap #39 inMap #1
    67395 
    67396 Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map
    67397 relion_locres_filtered_20240326_GT.mrc (#1) using 2256 atoms 
    67398 average map value = 0.007693, steps = 48 
    67399 shifted from previous position = 0.00851 
    67400 rotated from previous position = 0.0433 degrees 
    67401 atoms outside contour = 1121, contour level = 0.0054608 
    67402  
    67403 Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to
    67404 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67405 Matrix rotation and translation 
    67406 0.58579119 0.32343012 0.74312963 225.68292591 
    67407 -0.13514934 -0.86509974 0.48304978 254.81625439 
    67408 0.79911410 -0.38339978 -0.46305644 264.72194129 
    67409 Axis -0.88240463 -0.05701539 -0.46702388 
    67410 Axis point 0.00000000 136.05373122 37.61313871 
    67411 Rotation angle (degrees) 150.59634525 
    67412 Shift along axis -337.30357599 
    67413  
    67414 Drag select of 5 residues 
    67415 
    67416 > select up
    67417 
    67418 229 atoms, 232 bonds, 31 residues, 1 model selected 
    67419 
    67420 > delete sel
    67421 
    67422 > fitmap #39 inMap #1
    67423 
    67424 Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map
    67425 relion_locres_filtered_20240326_GT.mrc (#1) using 2027 atoms 
    67426 average map value = 0.008501, steps = 44 
    67427 shifted from previous position = 0.0433 
    67428 rotated from previous position = 0.229 degrees 
    67429 atoms outside contour = 896, contour level = 0.0054608 
    67430  
    67431 Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to
    67432 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67433 Matrix rotation and translation 
    67434 0.58769912 0.32000785 0.74310479 225.59331066 
    67435 -0.13607732 -0.86627875 0.48067046 254.70507979 
    67436 0.79755421 -0.38360932 -0.46556544 264.58615592 
    67437 Axis -0.88304153 -0.05563140 -0.46598585 
    67438 Axis point 0.00000000 136.18804161 37.84144087 
    67439 Rotation angle (degrees) 150.70038215 
    67440 Shift along axis -336.67126673 
    67441  
    67442 
    67443 > fitmap #39 inMap #1
    67444 
    67445 Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map
    67446 relion_locres_filtered_20240326_GT.mrc (#1) using 2027 atoms 
    67447 average map value = 0.0085, steps = 44 
    67448 shifted from previous position = 0.0109 
    67449 rotated from previous position = 0.0851 degrees 
    67450 atoms outside contour = 898, contour level = 0.0054608 
    67451  
    67452 Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to
    67453 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67454 Matrix rotation and translation 
    67455 0.58870044 0.31899070 0.74274943 225.56253675 
    67456 -0.13658149 -0.86638189 0.48034146 254.67400066 
    67457 0.79672912 -0.38422305 -0.46647118 264.52906130 
    67458 Axis -0.88334458 -0.05515223 -0.46546813 
    67459 Axis point 0.00000000 136.26566156 37.89878558 
    67460 Rotation angle (degrees) 150.70082407 
    67461 Shift along axis -336.42513097 
    67462  
    67463 Drag select of 7 residues 
    67464 
    67465 > delete sel
    67466 
    67467 Drag select of 4 residues 
    67468 
    67469 > delete sel
    67470 
    67471 Drag select of 4 residues 
    67472 
    67473 > delete sel
    67474 
    67475 Drag select of 4 residues 
    67476 
    67477 > select up
    67478 
    67479 61 atoms, 60 bonds, 10 residues, 1 model selected 
    67480 
    67481 > select clear
    67482 
    67483 Drag select of 6 residues 
    67484 
    67485 > delete sel
    67486 
    67487 Drag select of 3 residues 
    67488 
    67489 > delete sel
    67490 
    67491 > select #39/D:825
    67492 
    67493 9 atoms, 8 bonds, 1 residue, 1 model selected 
    67494 
    67495 > delete sel
    67496 
    67497 > fitmap #39 inMap #1
    67498 
    67499 Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map
    67500 relion_locres_filtered_20240326_GT.mrc (#1) using 1856 atoms 
    67501 average map value = 0.009053, steps = 48 
    67502 shifted from previous position = 0.123 
    67503 rotated from previous position = 1.09 degrees 
    67504 atoms outside contour = 737, contour level = 0.0054608 
    67505  
    67506 Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to
    67507 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67508 Matrix rotation and translation 
    67509 0.60090436 0.30593525 0.73845621 225.14344658 
    67510 -0.13729666 -0.87061879 0.47241141 254.16814824 
    67511 0.78744116 -0.38526165 -0.48115474 263.62381403 
    67512 Axis -0.88724197 -0.05067374 -0.45851266 
    67513 Axis point 0.00000000 136.73303752 39.17666397 
    67514 Rotation angle (degrees) 151.09645074 
    67515 Shift along axis -333.51122226 
    67516  
    67517 
    67518 > show #!1 models
    67519 
    67520 > fitmap #39 inMap #1
    67521 
    67522 Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map
    67523 relion_locres_filtered_20240326_GT.mrc (#1) using 1856 atoms 
    67524 average map value = 0.009053, steps = 44 
    67525 shifted from previous position = 0.0157 
    67526 rotated from previous position = 0.0987 degrees 
    67527 atoms outside contour = 737, contour level = 0.0054608 
    67528  
    67529 Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to
    67530 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67531 Matrix rotation and translation 
    67532 0.60197049 0.30463672 0.73812465 225.11508006 
    67533 -0.13793837 -0.87080078 0.47188876 254.14705450 
    67534 0.78651417 -0.38587882 -0.48217528 263.55192322 
    67535 Axis -0.88756662 -0.05007058 -0.45795025 
    67536 Axis point 0.00000000 136.82747679 39.23508340 
    67537 Rotation angle (degrees) 151.10453619 
    67538 Shift along axis -333.22359063 
    67539  
    67540 
    67541 > show #38 models
    67542 
    67543 > show #41 models
    67544 
    67545 > show #42 models
    67546 
    67547 Drag select of 1 relion_locres_filtered_20240326_GT.mrc , 12 residues 
    67548 
    67549 > select clear
    67550 
    67551 Drag select of 12 residues 
    67552 
    67553 > select up
    67554 
    67555 104 atoms, 103 bonds, 13 residues, 1 model selected 
    67556 
    67557 > delete sel
    67558 
    67559 Drag select of 5 residues 
    67560 
    67561 > select up
    67562 
    67563 58 atoms, 57 bonds, 7 residues, 1 model selected 
    67564 
    67565 > delete sel
    67566 
    67567 Drag select of 11 residues 
    67568 
    67569 > select down
    67570 
    67571 87 atoms, 11 residues, 1 model selected 
    67572 
    67573 > select up
    67574 
    67575 357 atoms, 363 bonds, 47 residues, 1 model selected 
    67576 
    67577 > delete sel
    67578 
    67579 > hide #!1 models
    67580 
    67581 > show #34.6 models
    67582 
    67583 > hide #34.6 models
    67584 
    67585 > hide #42 models
    67586 
    67587 > hide #41 models
    67588 
    67589 > show #34.6 models
    67590 
    67591 > hide #34.6 models
    67592 
    67593 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    67594 > dataset/Chimera sessions/20240805_leaf_fitting_AF3_final.cxs"
    67595 
    67596 > show #41 models
    67597 
    67598 > show #42 models
    67599 
    67600 > show #!1 models
    67601 
    67602 > show #!43 models
    67603 
    67604 > show #!44 models
    67605 
    67606 > show #!45 models
    67607 
    67608 > hide #!44 models
    67609 
    67610 > hide #!43 models
    67611 
    67612 > show #!44 models
    67613 
    67614 > hide #!1 models
    67615 
    67616 > show #!1 models
    67617 
    67618 > hide #!1 models
    67619 
    67620 Drag select of 8 residues 
    67621 
    67622 > select up
    67623 
    67624 334 atoms, 338 bonds, 44 residues, 1 model selected 
    67625 
    67626 > select down
    67627 
    67628 60 atoms, 8 residues, 1 model selected 
    67629 
    67630 > hide #41 models
    67631 
    67632 > hide #42 models
    67633 
    67634 > select add #44
    67635 
    67636 2760 atoms, 2795 bonds, 349 residues, 1 model selected 
    67637 
    67638 > select subtract #44
    67639 
    67640 Nothing selected 
    67641 Drag select of 27 residues 
    67642 
    67643 > delete sel
    67644 
    67645 > select #44/E:535
    67646 
    67647 9 atoms, 8 bonds, 1 residue, 1 model selected 
    67648 
    67649 > select #44/E:507
    67650 
    67651 7 atoms, 6 bonds, 1 residue, 1 model selected 
    67652 
    67653 > select clear
    67654 
    67655 > select #44/E:535
    67656 
    67657 9 atoms, 8 bonds, 1 residue, 1 model selected 
    67658 
    67659 > delete sel
    67660 
    67661 > select #44/E:507
    67662 
    67663 7 atoms, 6 bonds, 1 residue, 1 model selected 
    67664 
    67665 > delete sel
    67666 
    67667 > select #44/E:506
    67668 
    67669 8 atoms, 7 bonds, 1 residue, 1 model selected 
    67670 
    67671 > delete sel
    67672 
    67673 > select #44/E:505
    67674 
    67675 9 atoms, 8 bonds, 1 residue, 1 model selected 
    67676 
    67677 > delete sel
    67678 
    67679 > select #44/E:504
    67680 
    67681 9 atoms, 8 bonds, 1 residue, 1 model selected 
    67682 
    67683 > delete sel
    67684 
    67685 > select #44/E:503
    67686 
    67687 9 atoms, 8 bonds, 1 residue, 1 model selected 
    67688 
    67689 > delete sel
    67690 
    67691 > select #44/E:502
    67692 
    67693 7 atoms, 7 bonds, 1 residue, 1 model selected 
    67694 
    67695 > delete sel
    67696 
    67697 > select #44/E:501
    67698 
    67699 9 atoms, 8 bonds, 1 residue, 1 model selected 
    67700 
    67701 > delete sel
    67702 
    67703 > select #44/E:500
    67704 
    67705 8 atoms, 7 bonds, 1 residue, 1 model selected 
    67706 
    67707 > delete sel
    67708 
    67709 > show #!1 models
    67710 
    67711 > hide #!1 models
    67712 
    67713 > show #!1 models
    67714 
    67715 > show #41 models
    67716 
    67717 > show #42 models
    67718 
    67719 > show #!43 models
    67720 
    67721 > fitmap #38 inMap #1
    67722 
    67723 Fit molecule 20240711_copi_golph3_alpha_M1-T591.cif (#38) to map
    67724 relion_locres_filtered_20240326_GT.mrc (#1) using 4763 atoms 
    67725 average map value = 0.008699, steps = 28 
    67726 shifted from previous position = 0.0236 
    67727 rotated from previous position = 0.0106 degrees 
    67728 atoms outside contour = 1690, contour level = 0.0054608 
    67729  
    67730 Position of 20240711_copi_golph3_alpha_M1-T591.cif (#38) relative to
    67731 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67732 Matrix rotation and translation 
    67733 0.57925682 0.37627919 0.72310131 229.40958245 
    67734 -0.04014637 -0.87283727 0.48635724 258.31641239 
    67735 0.81415588 -0.31075565 -0.49049070 263.88915314 
    67736 Axis -0.88182995 -0.10073184 -0.46068322 
    67737 Axis point -0.00000000 129.96563876 41.80706218 
    67738 Rotation angle (degrees) 153.13016134 
    67739 Shift along axis -349.89023416 
    67740  
    67741 
    67742 > fitmap #39 inMap #1
    67743 
    67744 Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map
    67745 relion_locres_filtered_20240326_GT.mrc (#1) using 1856 atoms 
    67746 average map value = 0.009052, steps = 44 
    67747 shifted from previous position = 0.0187 
    67748 rotated from previous position = 0.0387 degrees 
    67749 atoms outside contour = 737, contour level = 0.0054608 
    67750  
    67751 Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to
    67752 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67753 Matrix rotation and translation 
    67754 0.60146802 0.30500027 0.73838408 225.11946579 
    67755 -0.13791350 -0.87073810 0.47201169 254.14091566 
    67756 0.78690284 -0.38573307 -0.48165747 263.58198922 
    67757 Axis -0.88741319 -0.05019697 -0.45823366 
    67758 Axis point 0.00000000 136.79731935 39.19893697 
    67759 Rotation angle (degrees) 151.09991048 
    67760 Shift along axis -333.31322885 
    67761  
    67762 
    67763 > fitmap #41 inMap #1
    67764 
    67765 Fit molecule 20240711_copi_golph3_betaprime_M1-S586.cif (#41) to map
    67766 relion_locres_filtered_20240326_GT.mrc (#1) using 4686 atoms 
    67767 average map value = 0.01004, steps = 28 
    67768 shifted from previous position = 0.0318 
    67769 rotated from previous position = 0.0303 degrees 
    67770 atoms outside contour = 1305, contour level = 0.0054608 
    67771  
    67772 Position of 20240711_copi_golph3_betaprime_M1-S586.cif (#41) relative to
    67773 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67774 Matrix rotation and translation 
    67775 0.59284247 0.33283311 0.73332116 230.50393053 
    67776 -0.03649999 -0.89855685 0.43733664 249.48895575 
    67777 0.80449087 -0.28603795 -0.52055426 258.87555685 
    67778 Axis -0.88723039 -0.08729077 -0.45299289 
    67779 Axis point 0.00000000 125.80360538 44.23524482 
    67780 Rotation angle (degrees) 155.94214965 
    67781 Shift along axis -343.55696233 
    67782  
    67783 
    67784 > fitmap #42 inMap #1
    67785 
    67786 Fit molecule 20240711_copi_golph3_betaprime_L587-D905.cif (#42) to map
    67787 relion_locres_filtered_20240326_GT.mrc (#1) using 2009 atoms 
    67788 average map value = 0.009611, steps = 44 
    67789 shifted from previous position = 0.0988 
    67790 rotated from previous position = 0.255 degrees 
    67791 atoms outside contour = 808, contour level = 0.0054608 
    67792  
    67793 Position of 20240711_copi_golph3_betaprime_L587-D905.cif (#42) relative to
    67794 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67795 Matrix rotation and translation 
    67796 0.59344452 0.33741789 0.73073440 226.60067008 
    67797 -0.11753036 -0.86182622 0.49339860 254.74842883 
    67798 0.79624759 -0.37868817 -0.47178920 265.07497120 
    67799 Axis -0.88464715 -0.06645675 -0.46150072 
    67800 Axis point 0.00000000 134.99509957 38.84469376 
    67801 Rotation angle (degrees) 150.46857105 
    67802 Shift along axis -339.72367958 
    67803  
    67804 
    67805 > fitmap #43 inMap #1
    67806 
    67807 Fit molecule 20240711_copi_golph3_beta_S711-L953.cif (#43) to map
    67808 relion_locres_filtered_20240326_GT.mrc (#1) using 1872 atoms 
    67809 average map value = 0.008979, steps = 48 
    67810 shifted from previous position = 0.0388 
    67811 rotated from previous position = 0.0207 degrees 
    67812 atoms outside contour = 594, contour level = 0.0054608 
    67813  
    67814 Position of 20240711_copi_golph3_beta_S711-L953.cif (#43) relative to
    67815 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67816 Matrix rotation and translation 
    67817 0.55236813 0.42744455 0.71566794 229.22862876 
    67818 -0.07118249 -0.83120460 0.55139094 257.71229740 
    67819 0.83055554 -0.35551381 -0.42870436 265.08166205 
    67820 Axis -0.87093568 -0.11033100 -0.47885082 
    67821 Axis point 0.00000000 129.66807422 34.28649497 
    67822 Rotation angle (degrees) 148.62415981 
    67823 Shift along axis -355.01161890 
    67824  
    67825 
    67826 > fitmap #44 inMap #1
    67827 
    67828 Fit molecule 20240711_copi_golph3_beta_H311-E659.cif (#44) to map
    67829 relion_locres_filtered_20240326_GT.mrc (#1) using 2488 atoms 
    67830 average map value = 0.01049, steps = 48 
    67831 shifted from previous position = 0.0818 
    67832 rotated from previous position = 0.312 degrees 
    67833 atoms outside contour = 856, contour level = 0.0054608 
    67834  
    67835 Position of 20240711_copi_golph3_beta_H311-E659.cif (#44) relative to
    67836 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67837 Matrix rotation and translation 
    67838 0.59143363 0.34566993 0.72850433 227.95503666 
    67839 -0.13172257 -0.84990236 0.51021089 253.99753634 
    67840 0.79552211 -0.39771634 -0.45712830 264.39375573 
    67841 Axis -0.88322158 -0.06519415 -0.46440215 
    67842 Axis point 0.00000000 135.21602975 35.96393996 
    67843 Rotation angle (degrees) 149.07029165 
    67844 Shift along axis -340.67899136 
    67845  
    67846 
    67847 > fitmap #44 inMap #1
    67848 
    67849 Fit molecule 20240711_copi_golph3_beta_H311-E659.cif (#44) to map
    67850 relion_locres_filtered_20240326_GT.mrc (#1) using 2488 atoms 
    67851 average map value = 0.01049, steps = 28 
    67852 shifted from previous position = 0.039 
    67853 rotated from previous position = 0.00945 degrees 
    67854 atoms outside contour = 854, contour level = 0.0054608 
    67855  
    67856 Position of 20240711_copi_golph3_beta_H311-E659.cif (#44) relative to
    67857 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67858 Matrix rotation and translation 
    67859 0.59149766 0.34577423 0.72840284 227.92948108 
    67860 -0.13166947 -0.84983342 0.51033941 254.02784025 
    67861 0.79548329 -0.39777299 -0.45714657 264.39514247 
    67862 Axis -0.88323725 -0.06524297 -0.46436549 
    67863 Axis point 0.00000000 135.23245815 35.96762681 
    67864 Rotation angle (degrees) 149.06389878 
    67865 Shift along axis -340.66532049 
    67866  
    67867 
    67868 > fitmap #44 inMap #1
    67869 
    67870 Fit molecule 20240711_copi_golph3_beta_H311-E659.cif (#44) to map
    67871 relion_locres_filtered_20240326_GT.mrc (#1) using 2488 atoms 
    67872 average map value = 0.01049, steps = 40 
    67873 shifted from previous position = 0.0274 
    67874 rotated from previous position = 0.041 degrees 
    67875 atoms outside contour = 857, contour level = 0.0054608 
    67876  
    67877 Position of 20240711_copi_golph3_beta_H311-E659.cif (#44) relative to
    67878 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67879 Matrix rotation and translation 
    67880 0.59164557 0.34604757 0.72815287 227.92017434 
    67881 -0.13097253 -0.84993837 0.51034396 253.97764784 
    67882 0.79548835 -0.39731077 -0.45753955 264.38682197 
    67883 Axis -0.88329404 -0.06552825 -0.46421728 
    67884 Axis point 0.00000000 135.16371112 36.03866076 
    67885 Rotation angle (degrees) 149.08340997 
    67886 Shift along axis -340.69617475 
    67887  
    67888 
    67889 > fitmap #45 inMap #1
    67890 
    67891 Fit molecule 20240711_copi_golph3_beta_M1-H311_K660-A710.cif (#45) to map
    67892 relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms 
    67893 average map value = 0.01059, steps = 28 
    67894 shifted from previous position = 0.0124 
    67895 rotated from previous position = 0.0648 degrees 
    67896 atoms outside contour = 1088, contour level = 0.0054608 
    67897  
    67898 Position of 20240711_copi_golph3_beta_M1-H311_K660-A710.cif (#45) relative to
    67899 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67900 Matrix rotation and translation 
    67901 0.59421777 0.37915482 0.70932846 225.99164989 
    67902 -0.07052607 -0.85395625 0.51554321 250.98951359 
    67903 0.80120616 -0.35637109 -0.48069568 261.45591263 
    67904 Axis -0.88488945 -0.09324495 -0.45637269 
    67905 Axis point 0.00000000 129.22523857 39.84864996 
    67906 Rotation angle (degrees) 150.48387508 
    67907 Shift along axis -342.70247180 
    67908  
    67909 
    67910 > show #46 models
    67911 
    67912 > hide #!1 models
    67913 
    67914 > hide #38 models
    67915 
    67916 > hide #39 models
    67917 
    67918 > hide #41 models
    67919 
    67920 > hide #42 models
    67921 
    67922 > hide #!43 models
    67923 
    67924 > hide #!44 models
    67925 
    67926 > hide #!45 models
    67927 
    67928 Drag select of 4 residues 
    67929 
    67930 > delete sel
    67931 
    67932 Drag select of 23 residues 
    67933 
    67934 > delete sel
    67935 
    67936 > show #!1 models
    67937 
    67938 Drag select of 9 residues 
    67939 
    67940 > delete sel
    67941 
    67942 > hide #!1 models
    67943 
    67944 Drag select of 7 residues 
    67945 
    67946 > delete sel
    67947 
    67948 > show #!1 models
    67949 
    67950 > hide #!1 models
    67951 
    67952 Drag select of 18 residues 
    67953 
    67954 > delete sel
    67955 
    67956 > show #!1 models
    67957 
    67958 > show #!45 models
    67959 
    67960 > select clear
    67961 
    67962 > select #46/G:179
    67963 
    67964 9 atoms, 8 bonds, 1 residue, 1 model selected 
    67965 
    67966 > delete sel
    67967 
    67968 > select #46/G:178
    67969 
    67970 9 atoms, 8 bonds, 1 residue, 1 model selected 
    67971 
    67972 > delete sel
    67973 
    67974 > fitmap #46 inMap #1
    67975 
    67976 Fit molecule 20240711_copi_golph3_delta_M1-S273.cif (#46) to map
    67977 relion_locres_filtered_20240326_GT.mrc (#1) using 1687 atoms 
    67978 average map value = 0.00921, steps = 40 
    67979 shifted from previous position = 0.0802 
    67980 rotated from previous position = 0.432 degrees 
    67981 atoms outside contour = 625, contour level = 0.0054608 
    67982  
    67983 Position of 20240711_copi_golph3_delta_M1-S273.cif (#46) relative to
    67984 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    67985 Matrix rotation and translation 
    67986 0.60555376 0.37694317 0.70086981 225.92253777 
    67987 -0.05371617 -0.85933682 0.50858116 251.52404936 
    67988 0.79398943 -0.34562128 -0.50012670 260.89204460 
    67989 Axis -0.88873380 -0.09688401 -0.44806887 
    67990 Axis point 0.00000000 128.95140527 42.03723196 
    67991 Rotation angle (degrees) 151.27718631 
    67992 Shift along axis -342.05125874 
    67993  
    67994 
    67995 > fitmap #46 inMap #1
    67996 
    67997 Fit molecule 20240711_copi_golph3_delta_M1-S273.cif (#46) to map
    67998 relion_locres_filtered_20240326_GT.mrc (#1) using 1687 atoms 
    67999 average map value = 0.00921, steps = 36 
    68000 shifted from previous position = 0.0026 
    68001 rotated from previous position = 0.0212 degrees 
    68002 atoms outside contour = 625, contour level = 0.0054608 
    68003  
    68004 Position of 20240711_copi_golph3_delta_M1-S273.cif (#46) relative to
    68005 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68006 Matrix rotation and translation 
    68007 0.60557554 0.37667940 0.70099279 225.92943929 
    68008 -0.05370995 -0.85952398 0.50826545 251.52366578 
    68009 0.79397324 -0.34544341 -0.50027527 260.88843027 
    68010 Axis -0.88875022 -0.09679693 -0.44805513 
    68011 Axis point 0.00000000 128.95257916 42.05397738 
    68012 Rotation angle (degrees) 151.29590684 
    68013 Shift along axis -342.03395646 
    68014  
    68015 
    68016 > fitmap #46 inMap #1
    68017 
    68018 Fit molecule 20240711_copi_golph3_delta_M1-S273.cif (#46) to map
    68019 relion_locres_filtered_20240326_GT.mrc (#1) using 1687 atoms 
    68020 average map value = 0.00921, steps = 40 
    68021 shifted from previous position = 0.034 
    68022 rotated from previous position = 0.0445 degrees 
    68023 atoms outside contour = 621, contour level = 0.0054608 
    68024  
    68025 Position of 20240711_copi_golph3_delta_M1-S273.cif (#46) relative to
    68026 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68027 Matrix rotation and translation 
    68028 0.60573039 0.37695519 0.70071070 225.92868374 
    68029 -0.05399153 -0.85915229 0.50886369 251.48998984 
    68030 0.79383601 -0.34606664 -0.50006226 260.88507598 
    68031 Axis -0.88877335 -0.09681175 -0.44800605 
    68032 Axis point 0.00000000 128.96117324 42.01611838 
    68033 Rotation angle (degrees) 151.25182612 
    68034 Shift along axis -342.02467069 
    68035  
    68036 
    68037 > select #46/G:223
    68038 
    68039 6 atoms, 5 bonds, 1 residue, 1 model selected 
    68040 
    68041 > delete sel
    68042 
    68043 > fitmap #46 inMap #1
    68044 
    68045 Fit molecule 20240711_copi_golph3_delta_M1-S273.cif (#46) to map
    68046 relion_locres_filtered_20240326_GT.mrc (#1) using 1681 atoms 
    68047 average map value = 0.009232, steps = 44 
    68048 shifted from previous position = 0.0363 
    68049 rotated from previous position = 0.0461 degrees 
    68050 atoms outside contour = 619, contour level = 0.0054608 
    68051  
    68052 Position of 20240711_copi_golph3_delta_M1-S273.cif (#46) relative to
    68053 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68054 Matrix rotation and translation 
    68055 0.60565962 0.37737338 0.70054676 225.91375703 
    68056 -0.05319936 -0.85921597 0.50883961 251.54232654 
    68057 0.79394349 -0.34545224 -0.50031639 260.88614007 
    68058 Axis -0.88876437 -0.09716549 -0.44794728 
    68059 Axis point 0.00000000 128.92911445 42.06422472 
    68060 Rotation angle (degrees) 151.27497962 
    68061 Shift along axis -342.08856667 
    68062  
    68063 
    68064 > fitmap #46 inMap #1
    68065 
    68066 Fit molecule 20240711_copi_golph3_delta_M1-S273.cif (#46) to map
    68067 relion_locres_filtered_20240326_GT.mrc (#1) using 1681 atoms 
    68068 average map value = 0.009232, steps = 36 
    68069 shifted from previous position = 0.0019 
    68070 rotated from previous position = 0.0132 degrees 
    68071 atoms outside contour = 619, contour level = 0.0054608 
    68072  
    68073 Position of 20240711_copi_golph3_delta_M1-S273.cif (#46) relative to
    68074 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68075 Matrix rotation and translation 
    68076 0.60565255 0.37723336 0.70062827 225.91751968 
    68077 -0.05316674 -0.85933407 0.50864355 251.54284148 
    68078 0.79395106 -0.34531138 -0.50040160 260.88418454 
    68079 Axis -0.88876887 -0.09712736 -0.44794661 
    68080 Axis point 0.00000000 128.92708608 42.07511626 
    68081 Rotation angle (degrees) 151.28752213 
    68082 Shift along axis -342.08233740 
    68083  
    68084 
    68085 > hide #!1 models
    68086 
    68087 > show #34.7 models
    68088 
    68089 > hide #34.7 models
    68090 
    68091 > show #47 models
    68092 
    68093 > hide #47 models
    68094 
    68095 > show #48 models
    68096 
    68097 > hide #48 models
    68098 
    68099 > show #!49 models
    68100 
    68101 > hide #!49 models
    68102 
    68103 > show #!1 models
    68104 
    68105 > hide #!1 models
    68106 
    68107 > show #!44 models
    68108 
    68109 > show #!43 models
    68110 
    68111 > show #38 models
    68112 
    68113 > show #39 models
    68114 
    68115 > show #41 models
    68116 
    68117 > show #42 models
    68118 
    68119 > show #47 models
    68120 
    68121 > show #48 models
    68122 
    68123 > show #!49 models
    68124 
    68125 > show #50 models
    68126 
    68127 > show #51 models
    68128 
    68129 > show #52 models
    68130 
    68131 > show #53 models
    68132 
    68133 > show #!54 models
    68134 
    68135 > show #55 models
    68136 
    68137 > show #!1 models
    68138 
    68139 > hide #!1 models
    68140 
    68141 > hide #55 models
    68142 
    68143 > hide #!54 models
    68144 
    68145 > hide #53 models
    68146 
    68147 > hide #52 models
    68148 
    68149 > hide #51 models
    68150 
    68151 > hide #50 models
    68152 
    68153 > hide #!46 models
    68154 
    68155 > hide #!45 models
    68156 
    68157 > hide #!44 models
    68158 
    68159 > hide #!43 models
    68160 
    68161 > hide #42 models
    68162 
    68163 > hide #41 models
    68164 
    68165 Drag select of 12 residues 
    68166 
    68167 > delete sel
    68168 
    68169 Drag select of 6 residues 
    68170 
    68171 > delete sel
    68172 
    68173 Drag select of 8 residues 
    68174 
    68175 > delete sel
    68176 
    68177 > select #49/H:583
    68178 
    68179 7 atoms, 6 bonds, 1 residue, 1 model selected 
    68180 
    68181 > delete sel
    68182 
    68183 > show #41 models
    68184 
    68185 > show #42 models
    68186 
    68187 > show #!43 models
    68188 
    68189 > show #!44 models
    68190 
    68191 > show #!45 models
    68192 
    68193 > show #!46 models
    68194 
    68195 > show #50 models
    68196 
    68197 > show #51 models
    68198 
    68199 > show #52 models
    68200 
    68201 > show #53 models
    68202 
    68203 > show #!54 models
    68204 
    68205 > show #55 models
    68206 
    68207 > show #!1 models
    68208 
    68209 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    68210 > dataset/Chimera sessions/20240805_leaf_fitting_AF3_final.cxs"
    68211 
    68212 > fitmap #38 inMap #1
    68213 
    68214 Fit molecule 20240711_copi_golph3_alpha_M1-T591.cif (#38) to map
    68215 relion_locres_filtered_20240326_GT.mrc (#1) using 4763 atoms 
    68216 average map value = 0.008699, steps = 44 
    68217 shifted from previous position = 0.0236 
    68218 rotated from previous position = 0.0107 degrees 
    68219 atoms outside contour = 1689, contour level = 0.0054608 
    68220  
    68221 Position of 20240711_copi_golph3_alpha_M1-T591.cif (#38) relative to
    68222 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68223 Matrix rotation and translation 
    68224 0.57928803 0.37610754 0.72316561 229.39213966 
    68225 -0.04023911 -0.87290929 0.48622030 258.29778260 
    68226 0.81412910 -0.31076114 -0.49053167 263.87493687 
    68227 Axis -0.88184203 -0.10064906 -0.46067820 
    68228 Axis point 0.00000000 129.96633324 41.81045087 
    68229 Rotation angle (degrees) 153.13534603 
    68230 Shift along axis -349.84648868 
    68231  
    68232 
    68233 > fitmap #39 inMap #1
    68234 
    68235 Fit molecule 20240711_copi_golph3_alpha_I592-G900.cif (#39) to map
    68236 relion_locres_filtered_20240326_GT.mrc (#1) using 1856 atoms 
    68237 average map value = 0.009052, steps = 28 
    68238 shifted from previous position = 0.0199 
    68239 rotated from previous position = 0.0556 degrees 
    68240 atoms outside contour = 735, contour level = 0.0054608 
    68241  
    68242 Position of 20240711_copi_golph3_alpha_I592-G900.cif (#39) relative to
    68243 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68244 Matrix rotation and translation 
    68245 0.60219289 0.30452316 0.73799009 225.08404402 
    68246 -0.13785076 -0.87084661 0.47182979 254.13974261 
    68247 0.78635926 -0.38586504 -0.48243889 263.52424373 
    68248 Axis -0.88763619 -0.05005770 -0.45781680 
    68249 Axis point 0.00000000 136.82920972 39.25982451 
    68250 Rotation angle (degrees) 151.10969654 
    68251 Shift along axis -333.16021952 
    68252  
    68253 
    68254 > fitmap #41 inMap #1
    68255 
    68256 Fit molecule 20240711_copi_golph3_betaprime_M1-S586.cif (#41) to map
    68257 relion_locres_filtered_20240326_GT.mrc (#1) using 4686 atoms 
    68258 average map value = 0.01004, steps = 40 
    68259 shifted from previous position = 0.0209 
    68260 rotated from previous position = 0.0155 degrees 
    68261 atoms outside contour = 1306, contour level = 0.0054608 
    68262  
    68263 Position of 20240711_copi_golph3_betaprime_M1-S586.cif (#41) relative to
    68264 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68265 Matrix rotation and translation 
    68266 0.59295682 0.33298464 0.73315990 230.47565312 
    68267 -0.03646127 -0.89845596 0.43754710 249.47671776 
    68268 0.80440835 -0.28617848 -0.52060454 258.88405677 
    68269 Axis -0.88725890 -0.08734777 -0.45292605 
    68270 Axis point 0.00000000 125.80239586 44.24867975 
    68271 Rotation angle (degrees) 155.93056047 
    68272 Shift along axis -343.53814387 
    68273  
    68274 
    68275 > fitmap #42 inMap #1
    68276 
    68277 Fit molecule 20240711_copi_golph3_betaprime_L587-D905.cif (#42) to map
    68278 relion_locres_filtered_20240326_GT.mrc (#1) using 2009 atoms 
    68279 average map value = 0.009612, steps = 40 
    68280 shifted from previous position = 0.0365 
    68281 rotated from previous position = 0.0376 degrees 
    68282 atoms outside contour = 806, contour level = 0.0054608 
    68283  
    68284 Position of 20240711_copi_golph3_betaprime_L587-D905.cif (#42) relative to
    68285 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68286 Matrix rotation and translation 
    68287 0.59391500 0.33716394 0.73046934 226.60180837 
    68288 -0.11776757 -0.86173358 0.49350384 254.76376583 
    68289 0.79586165 -0.37912493 -0.47208952 265.08713080 
    68290 Axis -0.88478071 -0.06630295 -0.46126674 
    68291 Axis point 0.00000000 135.04800086 38.86518440 
    68292 Rotation angle (degrees) 150.45330024 
    68293 Shift along axis -339.66037675 
    68294  
    68295 
    68296 > fitmap #43 inMap #1
    68297 
    68298 Fit molecule 20240711_copi_golph3_beta_S711-L953.cif (#43) to map
    68299 relion_locres_filtered_20240326_GT.mrc (#1) using 1872 atoms 
    68300 average map value = 0.008979, steps = 48 
    68301 shifted from previous position = 0.00928 
    68302 rotated from previous position = 0.058 degrees 
    68303 atoms outside contour = 595, contour level = 0.0054608 
    68304  
    68305 Position of 20240711_copi_golph3_beta_S711-L953.cif (#43) relative to
    68306 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68307 Matrix rotation and translation 
    68308 0.55318541 0.42731135 0.71511601 229.23248395 
    68309 -0.07089264 -0.83116159 0.55149311 257.71582932 
    68310 0.83003622 -0.35577440 -0.42949324 265.07353083 
    68311 Axis -0.87118608 -0.11034991 -0.47839074 
    68312 Axis point 0.00000000 129.69852811 34.36494916 
    68313 Rotation angle (degrees) 148.62023071 
    68314 Shift along axis -354.95179266 
    68315  
    68316 
    68317 > fitmap #44 inMap #1
    68318 
    68319 Fit molecule 20240711_copi_golph3_beta_H311-E659.cif (#44) to map
    68320 relion_locres_filtered_20240326_GT.mrc (#1) using 2488 atoms 
    68321 average map value = 0.01049, steps = 44 
    68322 shifted from previous position = 0.00269 
    68323 rotated from previous position = 0.0158 degrees 
    68324 atoms outside contour = 858, contour level = 0.0054608 
    68325  
    68326 Position of 20240711_copi_golph3_beta_H311-E659.cif (#44) relative to
    68327 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68328 Matrix rotation and translation 
    68329 0.59165406 0.34602484 0.72815677 227.91923540 
    68330 -0.13120248 -0.84983644 0.51045464 253.98345606 
    68331 0.79544414 -0.39754854 -0.45740986 264.38893676 
    68332 Axis -0.88328859 -0.06545590 -0.46423786 
    68333 Axis point 0.00000000 135.18382181 36.01531658 
    68334 Rotation angle (degrees) 149.07002452 
    68335 Shift along axis -340.68253036 
    68336  
    68337 
    68338 > fitmap #45 inMap #1
    68339 
    68340 Fit molecule 20240711_copi_golph3_beta_M1-H311_K660-A710.cif (#45) to map
    68341 relion_locres_filtered_20240326_GT.mrc (#1) using 2879 atoms 
    68342 average map value = 0.01059, steps = 28 
    68343 shifted from previous position = 0.013 
    68344 rotated from previous position = 0.0445 degrees 
    68345 atoms outside contour = 1087, contour level = 0.0054608 
    68346  
    68347 Position of 20240711_copi_golph3_beta_M1-H311_K660-A710.cif (#45) relative to
    68348 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68349 Matrix rotation and translation 
    68350 0.59382688 0.37913834 0.70966454 225.99540182 
    68351 -0.07111890 -0.85383085 0.51566945 250.98421627 
    68352 0.80144354 -0.35668894 -0.48006380 261.49180825 
    68353 Axis -0.88475932 -0.09308367 -0.45665783 
    68354 Axis point 0.00000000 129.24450465 39.78412987 
    68355 Rotation angle (degrees) 150.46257765 
    68356 Shift along axis -342.72635212 
    68357  
    68358 
    68359 > fitmap #46 inMap #1
    68360 
    68361 Fit molecule 20240711_copi_golph3_delta_M1-S273.cif (#46) to map
    68362 relion_locres_filtered_20240326_GT.mrc (#1) using 1681 atoms 
    68363 average map value = 0.009232, steps = 36 
    68364 shifted from previous position = 0.00229 
    68365 rotated from previous position = 0.00138 degrees 
    68366 atoms outside contour = 619, contour level = 0.0054608 
    68367  
    68368 Position of 20240711_copi_golph3_delta_M1-S273.cif (#46) relative to
    68369 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68370 Matrix rotation and translation 
    68371 0.60565582 0.37721154 0.70063719 225.91936681 
    68372 -0.05317775 -0.85934408 0.50862547 251.54408309 
    68373 0.79394783 -0.34531029 -0.50040748 260.88506982 
    68374 Axis -0.88877025 -0.09711704 -0.44794611 
    68375 Axis point 0.00000000 128.92865681 42.07546274 
    68376 Rotation angle (degrees) 151.28827510 
    68377 Shift along axis -342.08208254 
    68378  
    68379 
    68380 > fitmap #47 inMap #1
    68381 
    68382 Fit molecule 20240711_copi_golph3_gamma1_K300-F448.cif (#47) to map
    68383 relion_locres_filtered_20240326_GT.mrc (#1) using 1163 atoms 
    68384 average map value = 0.01156, steps = 28 
    68385 shifted from previous position = 0.0359 
    68386 rotated from previous position = 0.0812 degrees 
    68387 atoms outside contour = 406, contour level = 0.0054608 
    68388  
    68389 Position of 20240711_copi_golph3_gamma1_K300-F448.cif (#47) relative to
    68390 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68391 Matrix rotation and translation 
    68392 0.63735883 0.40216824 0.65729326 230.92053426 
    68393 -0.14074376 -0.77789273 0.61243292 258.40212385 
    68394 0.75760472 -0.48284946 -0.43919413 263.51538032 
    68395 Axis -0.89296796 -0.08178249 -0.44262834 
    68396 Axis point 0.00000000 139.97276575 30.34735340 
    68397 Rotation angle (degrees) 142.17280564 
    68398 Shift along axis -343.97678385 
    68399  
    68400 
    68401 > fitmap #48 inMap #1
    68402 
    68403 Fit molecule 20240711_copi_golph3_gamma1_M1-P299.cif (#48) to map
    68404 relion_locres_filtered_20240326_GT.mrc (#1) using 2333 atoms 
    68405 average map value = 0.0114, steps = 40 
    68406 shifted from previous position = 0.0337 
    68407 rotated from previous position = 0.107 degrees 
    68408 atoms outside contour = 861, contour level = 0.0054608 
    68409  
    68410 Position of 20240711_copi_golph3_gamma1_M1-P299.cif (#48) relative to
    68411 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68412 Matrix rotation and translation 
    68413 0.71018130 0.58934449 0.38511764 247.34816708 
    68414 0.22353933 -0.70748588 0.67044306 250.99527366 
    68415 0.66758722 -0.39004718 -0.63418491 271.51829102 
    68416 Axis -0.91672557 -0.24417677 -0.31621502 
    68417 Axis point 0.00000000 119.18898752 65.35215486 
    68418 Rotation angle (degrees) 144.66106725 
    68419 Shift along axis -373.89576549 
    68420  
    68421 
    68422 > fitmap #49 inMap #1
    68423 
    68424 Fit molecule 20240711_copi_golph3_gammm1_T449-R609.cif (#49) to map
    68425 relion_locres_filtered_20240326_GT.mrc (#1) using 1064 atoms 
    68426 average map value = 0.01126, steps = 48 
    68427 shifted from previous position = 0.0682 
    68428 rotated from previous position = 0.523 degrees 
    68429 atoms outside contour = 327, contour level = 0.0054608 
    68430  
    68431 Position of 20240711_copi_golph3_gammm1_T449-R609.cif (#49) relative to
    68432 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68433 Matrix rotation and translation 
    68434 0.61465895 0.32811241 0.71731208 227.85211531 
    68435 -0.19740465 -0.81645485 0.54261669 259.14664332 
    68436 0.76369220 -0.47512495 -0.43707037 264.40938172 
    68437 Axis -0.88781089 -0.04045897 -0.45842654 
    68438 Axis point 0.00000000 144.12846306 29.79812316 
    68439 Rotation angle (degrees) 145.02808860 
    68440 Shift along axis -333.98667268 
    68441  
    68442 
    68443 > fitmap #49 inMap #1
    68444 
    68445 Fit molecule 20240711_copi_golph3_gammm1_T449-R609.cif (#49) to map
    68446 relion_locres_filtered_20240326_GT.mrc (#1) using 1064 atoms 
    68447 average map value = 0.01126, steps = 44 
    68448 shifted from previous position = 0.0321 
    68449 rotated from previous position = 0.0462 degrees 
    68450 atoms outside contour = 324, contour level = 0.0054608 
    68451  
    68452 Position of 20240711_copi_golph3_gammm1_T449-R609.cif (#49) relative to
    68453 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68454 Matrix rotation and translation 
    68455 0.61502244 0.32743635 0.71730944 227.85342077 
    68456 -0.19788856 -0.81649374 0.54238187 259.17556224 
    68457 0.76327421 -0.47552436 -0.43736606 264.41457129 
    68458 Axis -0.88792245 -0.04009519 -0.45824240 
    68459 Axis point 0.00000000 144.20961212 29.80746923 
    68460 Rotation angle (degrees) 145.02664345 
    68461 Shift along axis -333.87382959 
    68462  
    68463 
    68464 > fitmap #50 inMap #1
    68465 
    68466 Fit molecule 20240711_copi_golph3_zeta1.cif (#50) to map
    68467 relion_locres_filtered_20240326_GT.mrc (#1) using 1200 atoms 
    68468 average map value = 0.01052, steps = 56 
    68469 shifted from previous position = 0.0555 
    68470 rotated from previous position = 0.263 degrees 
    68471 atoms outside contour = 378, contour level = 0.0054608 
    68472  
    68473 Position of 20240711_copi_golph3_zeta1.cif (#50) relative to
    68474 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68475 Matrix rotation and translation 
    68476 0.73251414 0.58212836 0.35291585 247.54139535 
    68477 0.25167844 -0.71327099 0.65414252 251.74744250 
    68478 0.63251956 -0.39034733 -0.66899025 274.75204630 
    68479 Axis -0.92380856 -0.24729804 -0.29226944 
    68480 Axis point 0.00000000 120.61570766 71.40135804 
    68481 Rotation angle (degrees) 145.57567415 
    68482 Shift along axis -371.23913687 
    68483  
    68484 
    68485 > fitmap #51 inMap #1
    68486 
    68487 Fit molecule 20240711_copi_golph3_beta_Arf1_.cif (#51) to map
    68488 relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms 
    68489 average map value = 0.007965, steps = 44 
    68490 shifted from previous position = 0.0233 
    68491 rotated from previous position = 0.0494 degrees 
    68492 atoms outside contour = 559, contour level = 0.0054608 
    68493  
    68494 Position of 20240711_copi_golph3_beta_Arf1_.cif (#51) relative to
    68495 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68496 Matrix rotation and translation 
    68497 0.62732550 0.37583357 0.68206440 225.38688247 
    68498 -0.03751618 -0.86023530 0.50851526 253.05396861 
    68499 0.77785298 -0.34459304 -0.52554770 258.39723144 
    68500 Axis -0.89537005 -0.10053381 -0.43382649 
    68501 Axis point 0.00000000 129.61295180 43.60190483 
    68502 Rotation angle (degrees) 151.54946723 
    68503 Shift along axis -339.34470784 
    68504  
    68505 
    68506 > fitmap #50 inMap #1
    68507 
    68508 Fit molecule 20240711_copi_golph3_zeta1.cif (#50) to map
    68509 relion_locres_filtered_20240326_GT.mrc (#1) using 1200 atoms 
    68510 average map value = 0.01052, steps = 40 
    68511 shifted from previous position = 0.00431 
    68512 rotated from previous position = 0.0156 degrees 
    68513 atoms outside contour = 378, contour level = 0.0054608 
    68514  
    68515 Position of 20240711_copi_golph3_zeta1.cif (#50) relative to
    68516 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68517 Matrix rotation and translation 
    68518 0.73264141 0.58211201 0.35267856 247.55303951 
    68519 0.25173348 -0.71318961 0.65421007 251.74165773 
    68520 0.63235023 -0.39052039 -0.66904932 274.76063038 
    68521 Axis -0.92384305 -0.24731042 -0.29214991 
    68522 Axis point 0.00000000 120.62565732 71.41736433 
    68523 Rotation angle (degrees) 145.56809476 
    68524 Shift along axis -371.22978396 
    68525  
    68526 
    68527 > fitmap #51 inMap #1
    68528 
    68529 Fit molecule 20240711_copi_golph3_beta_Arf1_.cif (#51) to map
    68530 relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms 
    68531 average map value = 0.007965, steps = 40 
    68532 shifted from previous position = 0.0158 
    68533 rotated from previous position = 0.0445 degrees 
    68534 atoms outside contour = 559, contour level = 0.0054608 
    68535  
    68536 Position of 20240711_copi_golph3_beta_Arf1_.cif (#51) relative to
    68537 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68538 Matrix rotation and translation 
    68539 0.62717948 0.37536024 0.68245922 225.37524868 
    68540 -0.03825161 -0.86031031 0.50833354 253.00868258 
    68541 0.77793490 -0.34492153 -0.52521084 258.41418396 
    68542 Axis -0.89532324 -0.10018293 -0.43400422 
    68543 Axis point 0.00000000 129.63691056 43.56713286 
    68544 Rotation angle (degrees) 151.54250251 
    68545 Shift along axis -339.28369878 
    68546  
    68547 
    68548 > fitmap #52 inMap #1
    68549 
    68550 Fit molecule 20240711_copi_golph3_gamma_Arf1_.cif (#52) to map
    68551 relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms 
    68552 average map value = 0.01044, steps = 84 
    68553 shifted from previous position = 0.032 
    68554 rotated from previous position = 0.0719 degrees 
    68555 atoms outside contour = 392, contour level = 0.0054608 
    68556  
    68557 Position of 20240711_copi_golph3_gamma_Arf1_.cif (#52) relative to
    68558 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68559 Matrix rotation and translation 
    68560 -0.55783285 0.36551831 -0.74513010 335.04867435 
    68561 0.54045417 0.84133441 0.00810603 166.90739297 
    68562 0.62986650 -0.39818686 -0.66686987 272.93165463 
    68563 Axis -0.28128830 -0.95194984 0.12111314 
    68564 Axis point 75.68867820 0.00000000 208.33038989 
    68565 Rotation angle (degrees) 133.76357273 
    68566 Shift along axis -220.07712654 
    68567  
    68568 
    68569 > fitmap #53 inMap #1
    68570 
    68571 Fit molecule 20240711_copi_golph3_third_Arf1.cif (#53) to map
    68572 relion_locres_filtered_20240326_GT.mrc (#1) using 1350 atoms 
    68573 average map value = 0.006839, steps = 48 
    68574 shifted from previous position = 0.00299 
    68575 rotated from previous position = 0.0179 degrees 
    68576 atoms outside contour = 557, contour level = 0.0054608 
    68577  
    68578 Position of 20240711_copi_golph3_third_Arf1.cif (#53) relative to
    68579 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68580 Matrix rotation and translation 
    68581 0.73571856 0.66852635 0.10858508 227.55132607 
    68582 0.67433984 -0.70810015 -0.20942768 323.63250252 
    68583 -0.06311881 0.22730308 -0.97177638 187.14042400 
    68584 Axis 0.93058498 0.36586629 0.01238737 
    68585 Axis point 0.00000000 105.38358680 104.96924755 
    68586 Rotation angle (degrees) 166.42877878 
    68587 Shift along axis 332.48024794 
    68588  
    68589 
    68590 > fitmap #55 inMap #1
    68591 
    68592 Fit molecule 20240711_copi_golph3_golph3_.cif (#55) to map
    68593 relion_locres_filtered_20240326_GT.mrc (#1) using 1971 atoms 
    68594 average map value = 0.008363, steps = 44 
    68595 shifted from previous position = 0.0108 
    68596 rotated from previous position = 0.00908 degrees 
    68597 atoms outside contour = 616, contour level = 0.0054608 
    68598  
    68599 Position of 20240711_copi_golph3_golph3_.cif (#55) relative to
    68600 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68601 Matrix rotation and translation 
    68602 0.52175848 0.47050138 0.71161545 230.53217799 
    68603 0.01176338 -0.83804772 0.54547012 257.45975389 
    68604 0.85301214 -0.27623265 -0.44279319 262.85417733 
    68605 Axis -0.86345476 -0.14858128 -0.48204718 
    68606 Axis point 0.00000000 121.70495834 37.26275203 
    68607 Rotation angle (degrees) 151.58706973 
    68608 Shift along axis -364.01592063 
    68609  
    68610 
    68611 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    68612 > dataset/Chimera sessions/20240805_leaf_fitting_AF3_final.cxs"
    68613 
    68614 > hide #!43 models
    68615 
    68616 > show #!43 models
    68617 
    68618 > hide #!43 models
    68619 
    68620 > show #!43 models
    68621 
    68622 > hide #!43 models
    68623 
    68624 > show #!43 models
    68625 
    68626 > show #!26.2 models
    68627 
    68628 > hide #!26.2 models
    68629 
    68630 > show #!29 models
    68631 
    68632 > hide #!29 models
    68633 
    68634 > show #!21 models
    68635 
    68636 > hide #!21 models
    68637 
    68638 > show #!20 models
    68639 
    68640 > hide #!20 models
    68641 
    68642 > show #!19 models
    68643 
    68644 > show #!18 models
    68645 
    68646 > hide #!19 models
    68647 
    68648 > hide #!18 models
    68649 
    68650 > show #!13 models
    68651 
    68652 > hide #!1 models
    68653 
    68654 > show #!1 models
    68655 
    68656 > hide #!1 models
    68657 
    68658 > hide #41 models
    68659 
    68660 > hide #42 models
    68661 
    68662 > hide #47 models
    68663 
    68664 > show #47 models
    68665 
    68666 > hide #!54 models
    68667 
    68668 > hide #55 models
    68669 
    68670 > hide #38 models
    68671 
    68672 > hide #39 models
    68673 
    68674 > hide #53 models
    68675 
    68676 > show #53 models
    68677 
    68678 > hide #52 models
    68679 
    68680 > show #52 models
    68681 
    68682 > hide #52 models
    68683 
    68684 > show #52 models
    68685 
    68686 > hide #51 models
    68687 
    68688 > hide #!13 models
    68689 
    68690 > hide #!43 models
    68691 
    68692 > show #!1 models
    68693 
    68694 > hide #!1 models
    68695 
    68696 > show #!1 models
    68697 
    68698 > show #38 models
    68699 
    68700 > show #39 models
    68701 
    68702 > show #41 models
    68703 
    68704 > show #42 models
    68705 
    68706 > show #!43 models
    68707 
    68708 > show #51 models
    68709 
    68710 > show #!54 models
    68711 
    68712 > show #55 models
    68713 
    68714 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    68715 > dataset/Chimera sessions/20240805_leaf_fitting_AF3_final.cxs"
    68716 
    68717 [Repeated 1 time(s)]
    68718 
    68719 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    68720 > resources/Processing/Reference structures/emd_3720_2017_leaf.map"
    68721 
    68722 Opened emd_3720_2017_leaf.map as #56, grid size 128,128,128, pixel 1.78, shown
    68723 at level 0.226, step 1, values float32 
    68724 
    68725 > color #56 #ebebebff models
    68726 
    68727 > select add #56
    68728 
    68729 2 models selected 
    68730 
    68731 > volume #56 level 0.1086
    68732 
    68733 > ui mousemode right "translate selected models"
    68734 
    68735 > view matrix models #56,1,0,0,51.457,0,1,0,21.433,0,0,1,260.83
    68736 
    68737 > view matrix models #56,1,0,0,189.96,0,1,0,166,0,0,1,244.2
    68738 
    68739 > view matrix models #56,1,0,0,216.08,0,1,0,189.21,0,0,1,215.66
    68740 
    68741 > ui mousemode right "rotate selected models"
    68742 
    68743 > view matrix models
    68744 > #56,-0.87728,0.47929,0.025732,368.35,-0.21391,-0.43841,0.87295,282.24,0.42968,0.76032,0.48713,136.71
    68745 
    68746 > fitmap #56 inMap #1
    68747 
    68748 Fit map emd_3720_2017_leaf.map in map relion_locres_filtered_20240326_GT.mrc
    68749 using 99958 points 
    68750 correlation = 0.5332, correlation about mean = 0.05426, overlap = 74.42 
    68751 steps = 144, shift = 15.2, angle = 12.9 degrees 
    68752  
    68753 Position of emd_3720_2017_leaf.map (#56) relative to
    68754 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68755 Matrix rotation and translation 
    68756 -0.90915636 0.40926168 0.07706874 310.78139643 
    68757 -0.21592730 -0.62148653 0.75308027 244.94933932 
    68758 0.35610408 0.66802647 0.65339920 44.26322602 
    68759 Axis -0.12328500 -0.40446016 -0.90620792 
    68760 Axis point 169.37967541 84.23413949 0.00000000 
    68761 Rotation angle (degrees) 159.82138625 
    68762 Shift along axis -177.49862073 
    68763  
    68764 
    68765 > ui mousemode right "rotate selected models"
    68766 
    68767 > view matrix models
    68768 > #56,0.028586,0.99946,0.016018,204.25,-0.69926,0.0085431,0.71482,305.01,0.7143,-0.031634,0.69912,158.33
    68769 
    68770 > fitmap #56 inMap #1
    68771 
    68772 Fit map emd_3720_2017_leaf.map in map relion_locres_filtered_20240326_GT.mrc
    68773 using 99958 points 
    68774 correlation = 0.5732, correlation about mean = 0.05181, overlap = 74.18 
    68775 steps = 216, shift = 16.7, angle = 26.2 degrees 
    68776  
    68777 Position of emd_3720_2017_leaf.map (#56) relative to
    68778 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68779 Matrix rotation and translation 
    68780 0.14815005 0.98893922 -0.00712591 129.99058546 
    68781 -0.92169370 0.14068110 0.36151011 287.97813152 
    68782 0.35851401 -0.04698983 0.93234096 80.90258523 
    68783 Axis -0.20551046 -0.18394820 -0.96121200 
    68784 Axis point 206.90335990 79.49737141 0.00000000 
    68785 Rotation angle (degrees) 83.65090012 
    68786 Shift along axis -157.45201883 
    68787  
    68788 
    68789 > view matrix models
    68790 > #56,0.81181,0.50827,0.28746,140.28,-0.55069,0.50271,0.66635,242.95,0.19417,-0.69925,0.688,282.81
    68791 
    68792 > fitmap #56 inMap #1
    68793 
    68794 Fit map emd_3720_2017_leaf.map in map relion_locres_filtered_20240326_GT.mrc
    68795 using 99958 points 
    68796 correlation = 0.5782, correlation about mean = 0.05654, overlap = 72.54 
    68797 steps = 184, shift = 11.1, angle = 13.7 degrees 
    68798  
    68799 Position of emd_3720_2017_leaf.map (#56) relative to
    68800 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68801 Matrix rotation and translation 
    68802 0.79081078 0.58143750 0.19117727 89.38509923 
    68803 -0.58500230 0.62618736 0.51542379 168.56102034 
    68804 0.17997393 -0.51944183 0.83533799 176.11718788 
    68805 Axis -0.66364076 0.00718450 -0.74801693 
    68806 Axis point 203.46435974 136.15873957 0.00000000 
    68807 Rotation angle (degrees) 51.23202796 
    68808 Shift along axis -189.84720692 
    68809  
    68810 
    68811 > view matrix models
    68812 > #56,-0.83504,0.54577,0.069577,354.99,-0.34302,-0.61532,0.70973,342.82,0.43016,0.56879,0.70103,110.03
    68813 
    68814 > fitmap #56 inMap #1
    68815 
    68816 Fit map emd_3720_2017_leaf.map in map relion_locres_filtered_20240326_GT.mrc
    68817 using 99958 points 
    68818 correlation = 0.5284, correlation about mean = 0.07061, overlap = 73.11 
    68819 steps = 124, shift = 3.19, angle = 3.81 degrees 
    68820  
    68821 Position of emd_3720_2017_leaf.map (#56) relative to
    68822 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68823 Matrix rotation and translation 
    68824 -0.87267930 0.47932627 0.09315128 299.02701674 
    68825 -0.27622892 -0.64192017 0.71528740 259.36655497 
    68826 0.40265173 0.59848543 0.69259423 35.62977534 
    68827 Axis -0.14161228 -0.37524252 -0.91604531 
    68828 Axis point 169.69435247 90.03733869 0.00000000 
    68829 Rotation angle (degrees) 155.64427649 
    68830 Shift along axis -172.30974707 
    68831  
    68832 
    68833 > view matrix models
    68834 > #56,-0.31115,0.95004,0.024789,250.19,-0.80196,-0.27647,0.52955,373.37,0.50994,0.14489,0.84792,135.75
    68835 
    68836 > ui mousemode right "translate selected models"
    68837 
    68838 > view matrix models
    68839 > #56,-0.31115,0.95004,0.024789,225.77,-0.80196,-0.27647,0.52955,368.63,0.50994,0.14489,0.84792,152.32
    68840 
    68841 > fitmap #56 inMap #1
    68842 
    68843 Fit map emd_3720_2017_leaf.map in map relion_locres_filtered_20240326_GT.mrc
    68844 using 99958 points 
    68845 correlation = 0.6869, correlation about mean = 0.2749, overlap = 157.2 
    68846 steps = 236, shift = 22.7, angle = 34.9 degrees 
    68847  
    68848 Position of emd_3720_2017_leaf.map (#56) relative to
    68849 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68850 Matrix rotation and translation 
    68851 -0.53804556 0.84152368 -0.04842391 217.98901816 
    68852 -0.84278716 -0.53807848 0.01346669 404.62940756 
    68853 -0.01472333 0.04805674 0.99873609 145.40110324 
    68854 Axis 0.02052818 -0.02000031 -0.99958921 
    68855 Axis point 220.49314606 140.31883812 0.00000000 
    68856 Rotation angle (degrees) 122.59477625 
    68857 Shift along axis -148.95916903 
    68858  
    68859 
    68860 > select subtract #56
    68861 
    68862 Nothing selected 
    68863 
    68864 > volume #56 level 0.1553
    68865 
    68866 > fitmap #56 inMap #1
    68867 
    68868 Fit map emd_3720_2017_leaf.map in map relion_locres_filtered_20240326_GT.mrc
    68869 using 58464 points 
    68870 correlation = 0.7124, correlation about mean = 0.2183, overlap = 126.6 
    68871 steps = 48, shift = 0.054, angle = 0.0916 degrees 
    68872  
    68873 Position of emd_3720_2017_leaf.map (#56) relative to
    68874 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68875 Matrix rotation and translation 
    68876 -0.53769722 0.84167956 -0.04957021 218.02664044 
    68877 -0.84301410 -0.53769614 0.01449435 404.48271442 
    68878 -0.01445412 0.04958195 0.99866546 145.17220156 
    68879 Axis 0.02081826 -0.02083516 -0.99956615 
    68880 Axis point 220.50989620 140.13520956 0.00000000 
    68881 Rotation angle (degrees) 122.57233532 
    68882 Shift along axis -148.99774609 
    68883  
    68884 
    68885 > open "/Users/becca/Desktop/Postdoc/Structure files/COPI
    68886 > structures/5nzr_COPI_coat_leaf_2017.cif"
    68887 
    68888 5nzr_COPI_coat_leaf_2017.cif title: 
    68889 The structure of the COPI coat leaf [more info...] 
    68890  
    68891 Chain information for 5nzr_COPI_coat_leaf_2017.cif #57 
    68892 --- 
    68893 Chain | Description | UniProt 
    68894 A | Coatomer subunit alpha | COPA_MOUSE 1-1224 
    68895 B | Coatomer subunit beta | COPB_MOUSE 16-968 
    68896 C | Coatomer subunit beta' | COPB2_MOUSE 1-905 
    68897 D | Coatomer subunit delta | COPD_MOUSE 1-511 
    68898 F M R | ADP-ribosylation factor 1 | ARF1_YEAST 1-181 
    68899 G K | Coatomer subunit gamma-1 | COPG1_MOUSE 1-874 
    68900 L Z | Coatomer subunit zeta-1 | COPZ1_MOUSE 1-177 
    68901  
    68902 
    68903 > select add #57
    68904 
    68905 18970 atoms, 18952 bonds, 7 pseudobonds, 4746 residues, 2 models selected 
    68906 
    68907 > hide sel atoms
    68908 
    68909 > show sel cartoons
    68910 
    68911 > view matrix models #57,1,0,0,121.05,0,1,0,117.63,0,0,1,248.75
    68912 
    68913 > view matrix models #57,1,0,0,188.14,0,1,0,202.34,0,0,1,265.38
    68914 
    68915 > ui mousemode right "rotate selected models"
    68916 
    68917 > view matrix models
    68918 > #57,-0.53664,0.8067,-0.24751,289.81,-0.76516,-0.58887,-0.2603,504.63,-0.35574,0.049695,0.93326,306.25
    68919 
    68920 > ui mousemode right "translate selected models"
    68921 
    68922 > view matrix models
    68923 > #57,-0.53664,0.8067,-0.24751,305.82,-0.76516,-0.58887,-0.2603,520.33,-0.35574,0.049695,0.93326,310.17
    68924 
    68925 > view matrix models
    68926 > #57,-0.53664,0.8067,-0.24751,316.06,-0.76516,-0.58887,-0.2603,517.32,-0.35574,0.049695,0.93326,286.43
    68927 
    68928 > fitmap #57 inMap #1
    68929 
    68930 Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#57) to map
    68931 relion_locres_filtered_20240326_GT.mrc (#1) using 18970 atoms 
    68932 average map value = 0.01164, steps = 192 
    68933 shifted from previous position = 19.8 
    68934 rotated from previous position = 19.8 degrees 
    68935 atoms outside contour = 5803, contour level = 0.0054608 
    68936  
    68937 Position of 5nzr_COPI_coat_leaf_2017.cif (#57) relative to
    68938 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    68939 Matrix rotation and translation 
    68940 -0.53780069 0.84149893 -0.05147785 218.34726608 
    68941 -0.84289565 -0.53793379 0.01241606 404.81621695 
    68942 -0.01724357 0.05006782 0.99859695 145.66655773 
    68943 Axis 0.02234309 -0.02031511 -0.99954394 
    68944 Axis point 220.87010415 140.20104413 0.00000000 
    68945 Rotation angle (degrees) 122.58626121 
    68946 Shift along axis -148.94545734 
    68947  
    68948 
    68949 The cached device pixel ratio value was stale on window expose. Please file a
    68950 QTBUG which explains how to reproduce. 
    68951 
    68952 > fitmap #57 inMap #56
    68953 
    68954 Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#57) to map emd_3720_2017_leaf.map
    68955 (#56) using 18970 atoms 
    68956 average map value = 0.2037, steps = 48 
    68957 shifted from previous position = 0.242 
    68958 rotated from previous position = 0.13 degrees 
    68959 atoms outside contour = 4747, contour level = 0.15531 
    68960  
    68961 Position of 5nzr_COPI_coat_leaf_2017.cif (#57) relative to
    68962 emd_3720_2017_leaf.map (#56) coordinates: 
    68963 Matrix rotation and translation 
    68964 0.99999980 0.00000142 0.00063110 -0.06591244 
    68965 -0.00000152 0.99999999 0.00016366 -0.04258127 
    68966 -0.00063110 -0.00016366 0.99999979 0.08970355 
    68967 Axis -0.25102649 0.96797759 -0.00225653 
    68968 Axis point 142.01093826 0.00000000 114.37935577 
    68969 Rotation angle (degrees) 0.03735560 
    68970 Shift along axis -0.02487437 
    68971  
    68972 
    68973 > fitmap #57 inMap #56
    68974 
    68975 Fit molecule 5nzr_COPI_coat_leaf_2017.cif (#57) to map emd_3720_2017_leaf.map
    68976 (#56) using 18970 atoms 
    68977 average map value = 0.2037, steps = 40 
    68978 shifted from previous position = 0.0347 
    68979 rotated from previous position = 0.00433 degrees 
    68980 atoms outside contour = 4741, contour level = 0.15531 
    68981  
    68982 Position of 5nzr_COPI_coat_leaf_2017.cif (#57) relative to
    68983 emd_3720_2017_leaf.map (#56) coordinates: 
    68984 Matrix rotation and translation 
    68985 0.99999980 0.00003994 0.00063608 -0.06331889 
    68986 -0.00004000 1.00000000 0.00009884 0.00276701 
    68987 -0.00063608 -0.00009886 0.99999980 0.09022728 
    68988 Axis -0.15326201 0.98624069 -0.06196826 
    68989 Axis point 142.48451750 0.00000000 97.94240538 
    68990 Rotation angle (degrees) 0.03695303 
    68991 Shift along axis 0.00684209 
    68992  
    68993 
    68994 > select subtract #57
    68995 
    68996 Nothing selected 
    68997 
    68998 > hide #!1 models
    68999 
    69000 > hide #!57 models
    69001 
    69002 > show #!57 models
    69003 
    69004 > hide #!57 models
    69005 
    69006 > show #!57 models
    69007 
    69008 > hide #55 models
    69009 
    69010 > hide #!54 models
    69011 
    69012 > hide #53 models
    69013 
    69014 > hide #52 models
    69015 
    69016 > hide #51 models
    69017 
    69018 > hide #50 models
    69019 
    69020 > hide #!49 models
    69021 
    69022 > hide #48 models
    69023 
    69024 > hide #47 models
    69025 
    69026 > hide #!46 models
    69027 
    69028 > hide #!45 models
    69029 
    69030 > hide #!44 models
    69031 
    69032 > hide #!43 models
    69033 
    69034 > hide #42 models
    69035 
    69036 > hide #41 models
    69037 
    69038 > hide #39 models
    69039 
    69040 > hide #38 models
    69041 
    69042 > hide #!56 models
    69043 
    69044 > show #38 models
    69045 
    69046 > show #39 models
    69047 
    69048 > show #!56 models
    69049 
    69050 > hide #!56 models
    69051 
    69052 > show #!56 models
    69053 
    69054 > show #!1 models
    69055 
    69056 > hide #!1 models
    69057 
    69058 > hide #!56 models
    69059 
    69060 > hide #38 models
    69061 
    69062 > hide #39 models
    69063 
    69064 > show #41 models
    69065 
    69066 > show #42 models
    69067 
    69068 > show #!1 models
    69069 
    69070 > hide #!1 models
    69071 
    69072 > hide #41 models
    69073 
    69074 > hide #42 models
    69075 
    69076 > show #!43 models
    69077 
    69078 > show #!44 models
    69079 
    69080 > show #!45 models
    69081 
    69082 > show #!56 models
    69083 
    69084 > color #56 #ebebeb68 models
    69085 
    69086 > color #56 #ebebeb69 models
    69087 
    69088 > show #!1 models
    69089 
    69090 > color #1 #76d6ffff models
    69091 
    69092 > color #1 #76d6ffa1 models
    69093 
    69094 > hide #!1 models
    69095 
    69096 > hide #!56 models
    69097 
    69098 > show #!1 models
    69099 
    69100 > show #41 models
    69101 
    69102 > show #42 models
    69103 
    69104 > show #39 models
    69105 
    69106 > show #38 models
    69107 
    69108 > show #!46 models
    69109 
    69110 > show #47 models
    69111 
    69112 > show #48 models
    69113 
    69114 > show #!49 models
    69115 
    69116 > show #!56 models
    69117 
    69118 > hide #!1 models
    69119 
    69120 > hide #!56 models
    69121 
    69122 > hide #!49 models
    69123 
    69124 > hide #48 models
    69125 
    69126 > hide #47 models
    69127 
    69128 > hide #!46 models
    69129 
    69130 > hide #!45 models
    69131 
    69132 > hide #!44 models
    69133 
    69134 > hide #!43 models
    69135 
    69136 > hide #42 models
    69137 
    69138 > hide #41 models
    69139 
    69140 > hide #39 models
    69141 
    69142 > hide #38 models
    69143 
    69144 > show #!43 models
    69145 
    69146 > show #!44 models
    69147 
    69148 > show #!45 models
    69149 
    69150 > hide #!45 models
    69151 
    69152 > show #!45 models
    69153 
    69154 > hide #!45 models
    69155 
    69156 > hide #!44 models
    69157 
    69158 > hide #!43 models
    69159 
    69160 > show #!46 models
    69161 
    69162 > show #!1 models
    69163 
    69164 > volume #1 level 0.003895
    69165 
    69166 > hide #!1 models
    69167 
    69168 > show #!56 models
    69169 
    69170 > hide #!56 models
    69171 
    69172 > show #!1 models
    69173 
    69174 > show #!56 models
    69175 
    69176 > hide #!56 models
    69177 
    69178 > hide #!1 models
    69179 
    69180 > hide #!46 models
    69181 
    69182 > show #47 models
    69183 
    69184 > show #48 models
    69185 
    69186 > show #!49 models
    69187 
    69188 > hide #!49 models
    69189 
    69190 > hide #48 models
    69191 
    69192 > hide #47 models
    69193 
    69194 > show #50 models
    69195 
    69196 > hide #50 models
    69197 
    69198 > show #!54 models
    69199 
    69200 > hide #!54 models
    69201 
    69202 > show #!54 models
    69203 
    69204 > show #55 models
    69205 
    69206 > show #38 models
    69207 
    69208 > show #39 models
    69209 
    69210 > show #50 models
    69211 
    69212 > show #41 models
    69213 
    69214 > hide #41 models
    69215 
    69216 > show #42 models
    69217 
    69218 > hide #42 models
    69219 
    69220 > show #!44 models
    69221 
    69222 > hide #!44 models
    69223 
    69224 > show #!45 models
    69225 
    69226 > hide #!45 models
    69227 
    69228 > show #!43 models
    69229 
    69230 > hide #!43 models
    69231 
    69232 > show #!43 models
    69233 
    69234 > hide #!43 models
    69235 
    69236 > show #41 models
    69237 
    69238 > hide #41 models
    69239 
    69240 > show #47 models
    69241 
    69242 > show #48 models
    69243 
    69244 > show #!43 models
    69245 
    69246 > show #!44 models
    69247 
    69248 > hide #48 models
    69249 
    69250 > hide #47 models
    69251 
    69252 > hide #!44 models
    69253 
    69254 > hide #!43 models
    69255 
    69256 > hide #38 models
    69257 
    69258 > hide #39 models
    69259 
    69260 > hide #50 models
    69261 
    69262 > hide #!54 models
    69263 
    69264 > hide #55 models
    69265 
    69266 > hide #!57 models
    69267 
    69268 > show #!56 models
    69269 
    69270 > show #!1 models
    69271 
    69272 > volume #1 level 0.005983
    69273 
    69274 > hide #!1 models
    69275 
    69276 > show #!1 models
    69277 
    69278 > hide #!1 models
    69279 
    69280 > show #!1 models
    69281 
    69282 > hide #!1 models
    69283 
    69284 > show #!1 models
    69285 
    69286 > hide #!1 models
    69287 
    69288 > show #!1 models
    69289 
    69290 > color #1 darkgrey models
    69291 
    69292 > hide #!56 models
    69293 
    69294 > show #55 models
    69295 
    69296 > show #!54 models
    69297 
    69298 > show #53 models
    69299 
    69300 > show #52 models
    69301 
    69302 > show #51 models
    69303 
    69304 > show #50 models
    69305 
    69306 > show #!49 models
    69307 
    69308 > show #48 models
    69309 
    69310 > show #47 models
    69311 
    69312 > show #!46 models
    69313 
    69314 > show #!45 models
    69315 
    69316 > show #!44 models
    69317 
    69318 > show #!43 models
    69319 
    69320 > show #42 models
    69321 
    69322 > show #41 models
    69323 
    69324 > show #39 models
    69325 
    69326 > show #38 models
    69327 
    69328 > save "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    69329 > dataset/Chimera sessions/20240805_leaf_fitting_AF3_final_with_2017comp.cxs"
    69330 
    69331 > hide #!43 models
    69332 
    69333 > show #!43 models
    69334 
    69335 > hide #!43 models
    69336 
    69337 > show #!43 models
    69338 
    69339 > hide #!43 models
    69340 
    69341 > show #!43 models
    69342 
    69343 > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3
    69344 > paper/Chimera sessions/20240805_COPI_leaf_fitting_AF3_final.cxs"
    69345 
    69346 > volume #1 level 0.006
    69347 
    69348 > save /Users/becca/Desktop/image1.png supersample 3
    69349 
    69350 > volume #1 level 0.004985
    69351 
    69352 > volume #1 level 0.005
    69353 
    69354 > save /Users/becca/Desktop/image2.png supersample 3
    69355 
    69356 > volume #1 level 0.0006
    69357 
    69358 > volume #1 level 0.006
    69359 
    69360 > volume #1 level 0.007
    69361 
    69362 > volume #1 level 0.005
    69363 
    69364 > save /Users/becca/Desktop/image3.png supersample 3
    69365 
    69366 > save /Users/becca/Desktop/image4.png supersample 3
    69367 
    69368 > volume #1 level 0.007
    69369 
    69370 > volume #1 level 0.008
    69371 
    69372 > save /Users/becca/Desktop/image5.png supersample 3
    69373 
    69374 > save /Users/becca/Desktop/image6.png supersample 3
    69375 
    69376 > lighting flat
    69377 
    69378 [Repeated 1 time(s)]
    69379 
    69380 > lighting simple
    69381 
    69382 > graphics silhouettes false
    69383 
    69384 > graphics silhouettes true
    69385 
    69386 > graphics silhouettes false
    69387 
    69388 > graphics silhouettes true
    69389 
    69390 > graphics silhouettes false
    69391 
    69392 > lighting shadows true
    69393 
    69394 > lighting shadows false
    69395 
    69396 > graphics silhouettes true
    69397 
    69398 > lighting soft
    69399 
    69400 > lighting full
    69401 
    69402 > graphics silhouettes false
    69403 
    69404 > lighting shadows false
    69405 
    69406 > lighting simple
    69407 
    69408 > set bgColor white
    69409 
    69410 > surface dust #1 size 17.1
    69411 
    69412 > volume #!1 style surface
    69413 
    69414 > volume #!1 style mesh
    69415 
    69416 [Repeated 1 time(s)]
    69417 
    69418 > volume #!1 style surface
    69419 
    69420 > volume #!1 showOutlineBox true
    69421 
    69422 > volume #!1 showOutlineBox false
    69423 
    69424 > volume #!1 showOutlineBox true
    69425 
    69426 > volume #!1 showOutlineBox false
    69427 
    69428 > set bgColor white
    69429 
    69430 > lighting simple
    69431 
    69432 > save /Users/becca/Desktop/image1.png supersample 3
    69433 
    69434 > graphics silhouettes true
    69435 
    69436 > save /Users/becca/Desktop/image1.png supersample 3
    69437 
    69438 [Repeated 1 time(s)]
    69439 
    69440 > volume #1 level 0.005
    69441 
    69442 > save /Users/becca/Desktop/image1.png supersample 3
    69443 
    69444 [Repeated 1 time(s)]
    69445 
    69446 > volume #1 level 0.008
    69447 
    69448 > save /Users/becca/Desktop/image1.png supersample 3
    69449 
    69450 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    69451 > dataset/Structure files/relion_locres_filtered_20240326_GT.mrc"
    69452 
    69453 Opened relion_locres_filtered_20240326_GT.mrc as #58, grid size 292,292,292,
    69454 pixel 1.71, shown at level 0.00473, step 2, values float32 
    69455 
    69456 > select add #58
    69457 
    69458 2 models selected 
    69459 
    69460 > view matrix models #58,1,0,0,64.329,0,1,0,76.949,0,0,1,20.463
    69461 
    69462 > view matrix models #58,1,0,0,68.607,0,1,0,91.17,0,0,1,74.656
    69463 
    69464 > fitmap #58 inMap #1
    69465 
    69466 Fit map relion_locres_filtered_20240326_GT.mrc in map
    69467 relion_locres_filtered_20240326_GT.mrc using 30918 points 
    69468 correlation = 0.6038, correlation about mean = 0.1653, overlap = 1.453 
    69469 steps = 84, shift = 5.22, angle = 2.66 degrees 
    69470  
    69471 Position of relion_locres_filtered_20240326_GT.mrc (#58) relative to
    69472 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    69473 Matrix rotation and translation 
    69474 0.99895433 -0.00859686 -0.04490377 18.37182947 
    69475 0.00961465 0.99970062 0.02249936 1.28166739 
    69476 0.04469690 -0.02290757 0.99873792 -9.26075418 
    69477 Axis -0.44478721 -0.87769046 0.17839225 
    69478 Axis point 171.87024853 0.00000000 296.68672427 
    69479 Rotation angle (degrees) 2.92584492 
    69480 Shift along axis -10.94850867 
    69481  
    69482 
    69483 > view matrix models
    69484 > #58,0.999,-0.021218,-0.039478,80.16,0.021704,0.99969,0.011922,65.861,0.039213,-0.012766,0.99915,66.634
    69485 
    69486 > fitmap #58 inMap #1
    69487 
    69488 Fit map relion_locres_filtered_20240326_GT.mrc in map
    69489 relion_locres_filtered_20240326_GT.mrc using 30918 points 
    69490 correlation = 1, correlation about mean = 1, overlap = 3.367 
    69491 steps = 124, shift = 2.8, angle = 2.92 degrees 
    69492  
    69493 Position of relion_locres_filtered_20240326_GT.mrc (#58) relative to
    69494 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    69495 Matrix rotation and translation 
    69496 0.99999999 -0.00010768 -0.00013271 0.06368984 
    69497 0.00010767 0.99999999 -0.00005201 -0.02406001 
    69498 0.00013271 0.00005200 0.99999999 -0.05210822 
    69499 Axis 0.29111674 -0.74291984 0.60276128 
    69500 Axis point 415.41817640 0.00000000 468.90051984 
    69501 Rotation angle (degrees) 0.01023486 
    69502 Shift along axis 0.00500702 
    69503  
    69504 
    69505 > volume #58 level 0.008
    69506 
    69507 > color #58 silver models
    69508 
    69509 > color #58 white models
    69510 
    69511 > ui tool show "Color Zone"
    69512 
    69513 The cached device pixel ratio value was stale on window expose. Please file a
    69514 QTBUG which explains how to reproduce. 
    69515 
    69516 [Repeated 1 time(s)]
    69517 
    69518 > color zone #58 near #38 distance 10.26
    69519 
    69520 > hide #!1 models
    69521 
    69522 > select subtract #58
    69523 
    69524 Nothing selected 
    69525 
    69526 > color zone #58 near #38 distance 10.93
    69527 
    69528 > color zone #58 near #38 distance 4.35
    69529 
    69530 > color zone #58 near #38 distance 5.21
    69531 
    69532 > color zone #58 near #38 distance 5.14
    69533 
    69534 > color zone #58 near #39 distance 5.14
    69535 
    69536 > volume splitbyzone #58
    69537 
    69538 Opened relion_locres_filtered_20240326_GT.mrc 0 as #59.1, grid size
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    69540 Opened relion_locres_filtered_20240326_GT.mrc 1 as #59.2, grid size
    69541 292,292,292, pixel 1.71, shown at level 0.008, step 1, values float32 
    69542 
    69543 > hide #!59.2 models
    69544 
    69545 > show #!59.2 models
    69546 
    69547 > hide #!59.1 models
    69548 
    69549 > show #!59.1 models
    69550 
    69551 > hide #!59.2 models
    69552 
    69553 > show #!59.2 models
    69554 
    69555 > color zone #58 near #38 distance 5.14
    69556 
    69557 [Repeated 1 time(s)]
    69558 
    69559 > color zone #59.1 near #38 distance 10.26
    69560 
    69561 [Repeated 1 time(s)]
    69562 
    69563 > color zone #59.1 near #41 distance 9.26
    69564 
    69565 > color zone #59.1 near #41 distance 9.16
    69566 
    69567 > color zone #59.1 near #41 distance 9.06
    69568 
    69569 > color zone #59.1 near #41 distance 8.96
    69570 
    69571 > color zone #59.1 near #41 distance 8.86
    69572 
    69573 > color zone #59.1 near #41 distance 8.76
    69574 
    69575 > color zone #59.1 near #41 distance 8.66
    69576 
    69577 > color zone #59.1 near #41 distance 8.56
    69578 
    69579 > color zone #59.1 near #41 distance 8.46
    69580 
    69581 > color zone #59.1 near #41 distance 8.36
    69582 
    69583 > color zone #59.1 near #41 distance 8.26
    69584 
    69585 > color zone #59.1 near #41 distance 8.16
    69586 
    69587 > color zone #59.1 near #41 distance 8.06
    69588 
    69589 > color zone #59.1 near #41 distance 7.96
    69590 
    69591 > color zone #59.1 near #38 distance 7.96
    69592 
    69593 > help help:user/tools/colorzone.html
    69594 
    69595 > close #59.1
    69596 
    69597 > close #59
    69598 
    69599 > show #!58 models
    69600 
    69601 > color zone #58 near #38 distance 5.14
    69602 
    69603 > color zone #58 near #39 distance 5.14
    69604 
    69605 > combine #38 #39 #41 #42 #43 #44 #45 #46 #47 #48 #49 #50 #51 #52 #53 #54 #55
    69606 
    69607 Remapping chain ID 'D' in 20240711_copi_golph3_alpha_I592-G900.cif #39 to 'E' 
    69608 Remapping chain ID 'F' in 20240711_copi_golph3_betaprime_L587-D905.cif #42 to
    69609 'G' 
    69610 Remapping chain ID 'E' in 20240711_copi_golph3_beta_S711-L953.cif #43 to 'H' 
    69611 Remapping chain ID 'E' in 20240711_copi_golph3_beta_H311-E659.cif #44 to 'I' 
    69612 Remapping chain ID 'E' in 20240711_copi_golph3_beta_M1-H311_K660-A710.cif #45
    69613 to 'J' 
    69614 Remapping chain ID 'G' in 20240711_copi_golph3_delta_M1-S273.cif #46 to 'K' 
    69615 Remapping chain ID 'H' in 20240711_copi_golph3_gamma1_K300-F448.cif #47 to 'L' 
    69616 Remapping chain ID 'H' in 20240711_copi_golph3_gamma1_M1-P299.cif #48 to 'M' 
    69617 Remapping chain ID 'H' in 20240711_copi_golph3_gammm1_T449-R609.cif #49 to 'N' 
    69618 Remapping chain ID 'I' in 20240711_copi_golph3_zeta1.cif #50 to 'O' 
    69619 Remapping chain ID 'B' in 20240711_copi_golph3_third_Arf1.cif #53 to 'P' 
    69620 Remapping chain ID 'A' in 20240711_copi_golph3_golph3_.cif #55 to 'Q' 
    69621 
    69622 > hide #!59 models
    69623 
    69624 > show #!59 models
    69625 
    69626 > hide #55 models
    69627 
    69628 > hide #!54 models
    69629 
    69630 > hide #53 models
    69631 
    69632 > hide #52 models
    69633 
    69634 > hide #51 models
    69635 
    69636 > hide #50 models
    69637 
    69638 > hide #!49 models
    69639 
    69640 > hide #48 models
    69641 
    69642 > hide #47 models
    69643 
    69644 > hide #!46 models
    69645 
    69646 > hide #!45 models
    69647 
    69648 > hide #!44 models
    69649 
    69650 > hide #!43 models
    69651 
    69652 > hide #42 models
    69653 
    69654 > hide #41 models
    69655 
    69656 > hide #39 models
    69657 
    69658 > hide #38 models
    69659 
    69660 > hide #!58 models
    69661 
    69662 > color zone #58 near #59 distance 5.14
    69663 
    69664 > show #!58 models
    69665 
    69666 > hide #!59 models
    69667 
    69668 > color zone #58 near #59 distance 4.97
    69669 
    69670 > color zone #58 near #59 distance 4.45
    69671 
    69672 > surface dust #58 size 17.1
    69673 
    69674 > color zone #58 near #59 distance 4.31
    69675 
    69676 > color zone #58 near #59 distance 4.7
    69677 
    69678 The cached device pixel ratio value was stale on window expose. Please file a
    69679 QTBUG which explains how to reproduce. 
    69680 
    69681 > volume #58 step 1
    69682 
    69683 > volume #58 level 0.005
    69684 
    69685 > color zone #58 near #59 distance 5.19
    69686 
    69687 > set bgColor white
    69688 
    69689 > save /Users/becca/Desktop/image1.png supersample 3
    69690 
    69691 > lighting simple
    69692 
    69693 > graphics silhouettes false
    69694 
    69695 > graphics silhouettes true
    69696 
    69697 > volume #58 level 0.008
    69698 
    69699 > save /Users/becca/Desktop/image1.png supersample 3
    69700 
    69701 > volume #58 level 0.005
    69702 
    69703 > color zone #58 near #59 distance 5.43
    69704 
    69705 > color zone #58 near #59 distance 6.99
    69706 
    69707 > save /Users/becca/Desktop/image1.png supersample 3
    69708 
    69709 > volume #58 level 0.008
    69710 
    69711 > save /Users/becca/Desktop/image1.png supersample 3
    69712 
    69713 > hide #!58 models
    69714 
    69715 > show #!59 models
    69716 
    69717 > rename #59 combined_model_COPI_GOLPH3
    69718 
    69719 > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3
    69720 > paper/Chimera sessions/20240806_COPI_leaf_AF3_for_figs_v1.cxs"
    69721 
    69722 > show #!1 models
    69723 
    69724 > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3
    69725 > paper/Chimera sessions/20240806_COPI_leaf_AF3_for_figs_v1.cxs"
    69726 
    69727 > hide #!59 models
    69728 
    69729 > show #!58 models
    69730 
    69731 > hide #!1 models
    69732 
    69733 > volume #58 level 0.005
    69734 
    69735 > ui mousemode right "map eraser"
    69736 
    69737 > volume erase #58 center 281.84,261.87,305.71 radius 22.725
    69738 
    69739 Opened relion_locres_filtered_20240326_GT.mrc copy as #61, grid size
    69740 292,292,292, pixel 1.71, shown at step 1, values float32 
    69741 
    69742 > surface dust #61 size 17.1
    69743 
    69744 > color zone #61 near #59 distance 10.26
    69745 
    69746 > color zone #61 near #59 distance 10.16
    69747 
    69748 > color zone #61 near #59 distance 6.84
    69749 
    69750 > save /Users/becca/Desktop/image1.png supersample 3
    69751 
    69752 > volume #61 level 0.008
    69753 
    69754 > save /Users/becca/Desktop/image2.png supersample 3
    69755 
    69756 > volume #61 level 0.005
    69757 
    69758 > save /Users/becca/Desktop/image3.png supersample 3
    69759 
    69760 > volume #61 level 0.008
    69761 
    69762 > save /Users/becca/Desktop/image4.png supersample 3
    69763 
    69764 > color zone #61 near #59 distance 4.76
    69765 
    69766 > color zone #61 near #59 distance 4.4
    69767 
    69768 > color zone #61 near #59 distance 5.99
    69769 
    69770 > save /Users/becca/Desktop/image5.png supersample 3
    69771 
    69772 > hide #!61 models
    69773 
    69774 > show #!1 models
    69775 
    69776 > color #1 #a9a9a9a0 models
    69777 
    69778 > hide #!1 models
    69779 
    69780 > color #1 #a9a9a9a1 models
    69781 
    69782 > show #!1 models
    69783 
    69784 > show #!57 models
    69785 
    69786 > hide #!57 models
    69787 
    69788 > show #!59 models
    69789 
    69790 > hide #!1 models
    69791 
    69792 > show #!1 models
    69793 
    69794 > hide #!1 models
    69795 
    69796 > ui mousemode right select
    69797 
    69798 > select #59/O:73
    69799 
    69800 8 atoms, 7 bonds, 1 residue, 1 model selected 
    69801 
    69802 > show sel atoms
    69803 
    69804 > style sel stick
    69805 
    69806 Changed 8 atom styles 
    69807 
    69808 > select #59/O:74
    69809 
    69810 8 atoms, 7 bonds, 1 residue, 1 model selected 
    69811 
    69812 > show sel atoms
    69813 
    69814 > style sel stick
    69815 
    69816 Changed 8 atom styles 
    69817 
    69818 > select #59/O:72
    69819 
    69820 6 atoms, 5 bonds, 1 residue, 1 model selected 
    69821 
    69822 > show sel atoms
    69823 
    69824 > show sel cartoons
    69825 
    69826 > style sel stick
    69827 
    69828 Changed 6 atom styles 
    69829 
    69830 > show #!1 models
    69831 
    69832 > hide #!1 models
    69833 
    69834 > select #59/O:108
    69835 
    69836 8 atoms, 7 bonds, 1 residue, 1 model selected 
    69837 
    69838 > show sel atoms
    69839 
    69840 > style sel stick
    69841 
    69842 Changed 8 atom styles 
    69843 
    69844 > select #59/O:107
    69845 
    69846 9 atoms, 8 bonds, 1 residue, 1 model selected 
    69847 
    69848 > style sel stick
    69849 
    69850 Changed 9 atom styles 
    69851 
    69852 > show sel atoms
    69853 
    69854 > select #59/O:109
    69855 
    69856 7 atoms, 6 bonds, 1 residue, 1 model selected 
    69857 
    69858 > select #59/O:108
    69859 
    69860 8 atoms, 7 bonds, 1 residue, 1 model selected 
    69861 
    69862 > select #59/O:108
    69863 
    69864 8 atoms, 7 bonds, 1 residue, 1 model selected 
    69865 
    69866 > select #59/O:109
    69867 
    69868 7 atoms, 6 bonds, 1 residue, 1 model selected 
    69869 
    69870 > show sel atoms
    69871 
    69872 > style sel stick
    69873 
    69874 Changed 7 atom styles 
    69875 
    69876 > select #59/O:106
    69877 
    69878 11 atoms, 10 bonds, 1 residue, 1 model selected 
    69879 
    69880 > show sel atoms
    69881 
    69882 > style sel stick
    69883 
    69884 Changed 11 atom styles 
    69885 
    69886 > show #!1 models
    69887 
    69888 > hide #!1 models
    69889 
    69890 > show #!1 models
    69891 
    69892 > hide #!1 models
    69893 
    69894 > show #!1 models
    69895 
    69896 > hide #!1 models
    69897 
    69898 > select #59/Q:223
    69899 
    69900 8 atoms, 7 bonds, 1 residue, 1 model selected 
    69901 
    69902 > show sel atoms
    69903 
    69904 > style sel stick
    69905 
    69906 Changed 8 atom styles 
    69907 
    69908 > select clear
    69909 
    69910 > select #59/Q:224
    69911 
    69912 9 atoms, 8 bonds, 1 residue, 1 model selected 
    69913 
    69914 > show sel atoms
    69915 
    69916 > style sel stick
    69917 
    69918 Changed 9 atom styles 
    69919 
    69920 > select #59/Q:225
    69921 
    69922 14 atoms, 15 bonds, 1 residue, 1 model selected 
    69923 
    69924 > show sel atoms
    69925 
    69926 > style sel stick
    69927 
    69928 Changed 14 atom styles 
    69929 
    69930 > select #59/Q:259
    69931 
    69932 9 atoms, 8 bonds, 1 residue, 1 model selected 
    69933 
    69934 > show sel atoms
    69935 
    69936 > style sel stick
    69937 
    69938 Changed 9 atom styles 
    69939 
    69940 > select #59/Q:263
    69941 
    69942 8 atoms, 7 bonds, 1 residue, 1 model selected 
    69943 
    69944 > show sel atoms
    69945 
    69946 > style sel stick
    69947 
    69948 Changed 8 atom styles 
    69949 
    69950 > show #!1 models
    69951 
    69952 > hide #!1 models
    69953 
    69954 > show #!1 models
    69955 
    69956 > hide #!1 models
    69957 
    69958 > show #!1 models
    69959 
    69960 > hide #!1 models
    69961 
    69962 > select #59/Q:225
    69963 
    69964 14 atoms, 15 bonds, 1 residue, 1 model selected 
    69965 
    69966 > select #59/Q:226
    69967 
    69968 7 atoms, 6 bonds, 1 residue, 1 model selected 
    69969 
    69970 > show sel atoms
    69971 
    69972 > style sel stick
    69973 
    69974 Changed 7 atom styles 
    69975 
    69976 > select clear
    69977 
    69978 > select #59/Q:225
    69979 
    69980 14 atoms, 15 bonds, 1 residue, 1 model selected 
    69981 
    69982 > select #59/Q:226@CB
    69983 
    69984 1 atom, 1 residue, 1 model selected 
    69985 
    69986 > select #59/Q:226@CA
    69987 
    69988 1 atom, 1 residue, 1 model selected 
    69989 
    69990 > select #59/Q:226
    69991 
    69992 7 atoms, 6 bonds, 1 residue, 1 model selected 
    69993 
    69994 > select #59/O:107@NZ
    69995 
    69996 1 atom, 1 residue, 1 model selected 
    69997 
    69998 > select #59/Q:259
    69999 
    70000 9 atoms, 8 bonds, 1 residue, 1 model selected 
    70001 
    70002 > select #59/O:106@CG
    70003 
    70004 1 atom, 1 residue, 1 model selected 
    70005 
    70006 > select clear
    70007 
    70008 [Repeated 1 time(s)]
    70009 
    70010 > select #59/O:106
    70011 
    70012 11 atoms, 10 bonds, 1 residue, 1 model selected 
    70013 
    70014 > hide sel atoms
    70015 
    70016 > select #59/O:108@CB
    70017 
    70018 1 atom, 1 residue, 1 model selected 
    70019 
    70020 > hide sel atoms
    70021 
    70022 > undo
    70023 
    70024 > select #59/O:107
    70025 
    70026 9 atoms, 8 bonds, 1 residue, 1 model selected 
    70027 
    70028 > select #59/O:108
    70029 
    70030 8 atoms, 7 bonds, 1 residue, 1 model selected 
    70031 
    70032 > hide sel atoms
    70033 
    70034 > select clear
    70035 
    70036 > select #59/Q:263
    70037 
    70038 8 atoms, 7 bonds, 1 residue, 1 model selected 
    70039 
    70040 > hide sel atoms
    70041 
    70042 > show #!1 models
    70043 
    70044 > select #59/M:12
    70045 
    70046 6 atoms, 5 bonds, 1 residue, 1 model selected 
    70047 
    70048 > select #59/M:1
    70049 
    70050 8 atoms, 7 bonds, 1 residue, 1 model selected 
    70051 
    70052 > hide sel cartoons
    70053 
    70054 > select #59/M:3
    70055 
    70056 9 atoms, 8 bonds, 1 residue, 1 model selected 
    70057 
    70058 > select #59/M:2
    70059 
    70060 8 atoms, 7 bonds, 1 residue, 1 model selected 
    70061 
    70062 > hide sel atoms
    70063 
    70064 [Repeated 1 time(s)]
    70065 
    70066 > select #59/M:3
    70067 
    70068 9 atoms, 8 bonds, 1 residue, 1 model selected 
    70069 
    70070 > select #59/M:2
    70071 
    70072 8 atoms, 7 bonds, 1 residue, 1 model selected 
    70073 
    70074 > hide sel cartoons
    70075 
    70076 > select clear
    70077 
    70078 > select #59/M:3
    70079 
    70080 9 atoms, 8 bonds, 1 residue, 1 model selected 
    70081 
    70082 > hide sel cartoons
    70083 
    70084 > select clear
    70085 
    70086 > select #59/M:4
    70087 
    70088 9 atoms, 8 bonds, 1 residue, 1 model selected 
    70089 
    70090 > hide sel cartoons
    70091 
    70092 > select clear
    70093 
    70094 > select #59/M:5
    70095 
    70096 11 atoms, 11 bonds, 1 residue, 1 model selected 
    70097 
    70098 > hide sel cartoons
    70099 
    70100 > select #59/M:16
    70101 
    70102 6 atoms, 5 bonds, 1 residue, 1 model selected 
    70103 
    70104 > select #59/M:6
    70105 
    70106 8 atoms, 7 bonds, 1 residue, 1 model selected 
    70107 
    70108 > hide sel atoms
    70109 
    70110 > hide sel cartoons
    70111 
    70112 > select #59/M:7
    70113 
    70114 9 atoms, 8 bonds, 1 residue, 1 model selected 
    70115 
    70116 > hide sel cartoons
    70117 
    70118 > select #59/M:8
    70119 
    70120 9 atoms, 8 bonds, 1 residue, 1 model selected 
    70121 
    70122 > hide sel cartoons
    70123 
    70124 > select #1
    70125 
    70126 2 models selected 
    70127 
    70128 > select #59/M:9
    70129 
    70130 8 atoms, 7 bonds, 1 residue, 1 model selected 
    70131 
    70132 > hide sel cartoons
    70133 
    70134 > select #1
    70135 
    70136 2 models selected 
    70137 
    70138 > select #1
    70139 
    70140 2 models selected 
    70141 
    70142 > select clear
    70143 
    70144 > select #1
    70145 
    70146 2 models selected 
    70147 
    70148 > select clear
    70149 
    70150 > select #59/M:10
    70151 
    70152 9 atoms, 8 bonds, 1 residue, 1 model selected 
    70153 
    70154 > hide sel cartoons
    70155 
    70156 > select clear
    70157 
    70158 > select #59/M:11
    70159 
    70160 9 atoms, 8 bonds, 1 residue, 1 model selected 
    70161 
    70162 > hide sel cartoons
    70163 
    70164 > select #59/M:12
    70165 
    70166 6 atoms, 5 bonds, 1 residue, 1 model selected 
    70167 
    70168 > hide sel cartoons
    70169 
    70170 > select #59/M:13
    70171 
    70172 4 atoms, 3 bonds, 1 residue, 1 model selected 
    70173 
    70174 > hide sel cartoons
    70175 
    70176 > select #59/M:14
    70177 
    70178 4 atoms, 3 bonds, 1 residue, 1 model selected 
    70179 
    70180 > hide sel cartoons
    70181 
    70182 > select #59/M:15
    70183 
    70184 4 atoms, 3 bonds, 1 residue, 1 model selected 
    70185 
    70186 > hide sel cartoons
    70187 
    70188 > select #59/M:16
    70189 
    70190 6 atoms, 5 bonds, 1 residue, 1 model selected 
    70191 
    70192 > hide sel cartoons
    70193 
    70194 > select #59/K:255
    70195 
    70196 4 atoms, 3 bonds, 1 residue, 1 model selected 
    70197 
    70198 > delete sel
    70199 
    70200 > select #59/K:254
    70201 
    70202 8 atoms, 7 bonds, 1 residue, 1 model selected 
    70203 
    70204 > delete sel
    70205 
    70206 > select #59/K:253
    70207 
    70208 8 atoms, 7 bonds, 1 residue, 1 model selected 
    70209 
    70210 > delete sel
    70211 
    70212 > select #59/K:252
    70213 
    70214 6 atoms, 5 bonds, 1 residue, 1 model selected 
    70215 
    70216 > delete sel
    70217 
    70218 > select #59/K:251
    70219 
    70220 6 atoms, 5 bonds, 1 residue, 1 model selected 
    70221 
    70222 > delete sel
    70223 
    70224 > select #59/K:250
    70225 
    70226 8 atoms, 7 bonds, 1 residue, 1 model selected 
    70227 
    70228 > delete sel
    70229 
    70230 > select #59/K:249
    70231 
    70232 8 atoms, 7 bonds, 1 residue, 1 model selected 
    70233 
    70234 > delete sel
    70235 
    70236 > select #59/K:248
    70237 
    70238 7 atoms, 6 bonds, 1 residue, 1 model selected 
    70239 
    70240 > delete sel
    70241 
    70242 > select #59/K:247
    70243 
    70244 9 atoms, 8 bonds, 1 residue, 1 model selected 
    70245 
    70246 > delete sel
    70247 
    70248 > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3
    70249 > paper/Chimera sessions/20240806_COPI_leaf_AF3_for_figs_v2.cxs"
    70250 
    70251 > show #!61 models
    70252 
    70253 > hide #!1 models
    70254 
    70255 > color zone #61 near #59 distance 5.86
    70256 
    70257 > color zone #61 near #59 distance 5.55
    70258 
    70259 > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3
    70260 > paper/Chimera sessions/20240806_COPI_leaf_AF3_for_figs_v2.cxs"
    70261 
    70262 ——— End of log from Tue Aug 6 15:17:45 2024 ———
    70263 
    70264 opened ChimeraX session 
    70265 
    70266 > hide #!61 models
    70267 
    70268 > show #!61 models
    70269 
    70270 > hide #!59 models
    70271 
    70272 > show #!59 models
    70273 
    70274 > hide #!61 models
    70275 
    70276 > show #!58 models
    70277 
    70278 > hide #!58 models
    70279 
    70280 > show #!58 models
    70281 
    70282 > show #!61 models
    70283 
    70284 > hide #!61 models
    70285 
    70286 > show #!61 models
    70287 
    70288 > hide #!61 models
    70289 
    70290 > show #!56 models
    70291 
    70292 > hide #!56 models
    70293 
    70294 > show #!57 models
    70295 
    70296 > close #61
    70297 
    70298 > combine #1
    70299 
    70300 No structures specified 
    70301 
    70302 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    70303 > dataset/Structure files/relion_locres_filtered_20240326_GT.mrc"
    70304 
    70305 Opened relion_locres_filtered_20240326_GT.mrc as #60, grid size 292,292,292,
    70306 pixel 1.71, shown at level 0.00473, step 2, values float32 
    70307 
    70308 > select add #60
    70309 
    70310 2 models selected 
    70311 
    70312 > ui mousemode right "translate selected models"
    70313 
    70314 > view matrix models #60,1,0,0,94.293,0,1,0,59.794,0,0,1,17.203
    70315 
    70316 > view matrix models #60,1,0,0,87.011,0,1,0,46.591,0,0,1,75.712
    70317 
    70318 > view matrix models #60,1,0,0,62.484,0,1,0,72.607,0,0,1,72.836
    70319 
    70320 > ui tool show "Fit in Map"
    70321 
    70322 The cached device pixel ratio value was stale on window expose. Please file a
    70323 QTBUG which explains how to reproduce. 
    70324 
    70325 [Repeated 1 time(s)]
    70326 
    70327 > fitmap #60 inMap #1
    70328 
    70329 Fit map relion_locres_filtered_20240326_GT.mrc in map
    70330 relion_locres_filtered_20240326_GT.mrc using 30918 points 
    70331 correlation = 1, correlation about mean = 1, overlap = 3.365 
    70332 steps = 92, shift = 5.1, angle = 0.971 degrees 
    70333  
    70334 Position of relion_locres_filtered_20240326_GT.mrc (#60) relative to
    70335 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    70336 Matrix rotation and translation 
    70337 0.99999999 0.00004012 -0.00014956 0.04461249 
    70338 -0.00004012 1.00000000 0.00001176 -0.00027160 
    70339 0.00014956 -0.00001176 0.99999999 -0.04335390 
    70340 Axis -0.07572659 -0.96307673 -0.25835770 
    70341 Axis point 275.92599265 0.00000000 302.35452588 
    70342 Rotation angle (degrees) 0.00889794 
    70343 Shift along axis 0.00808403 
    70344  
    70345 
    70346 > select subtract #60
    70347 
    70348 Nothing selected 
    70349 
    70350 The cached device pixel ratio value was stale on window expose. Please file a
    70351 QTBUG which explains how to reproduce. 
    70352 
    70353 > volume #60 step 1
    70354 
    70355 > volume #60 level 0.005
    70356 
    70357 > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3
    70358 > paper/Chimera sessions/20240808_COPI_leaf_AF3_for_figs_v5.cxs"
    70359 
    70360 > color #24 #98fcffff
    70361 
    70362 > color #24 label_red
    70363 
    70364 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
    70365 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
    70366 'fromcartoons', 'fromribbons', or 'random' or a keyword 
    70367 
    70368 > color #24 alphav1
    70369 
    70370 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
    70371 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
    70372 'fromcartoons', 'fromribbons', or 'random' or a keyword 
    70373 
    70374 > color name label_red #E32723
    70375 
    70376 Color 'label_red' is opaque: rgb(89%, 15.3%, 13.7%) hex: #e32723
    70377 
    70378  
    70379 
    70380 > color name label_purple #6C4896
    70381 
    70382 Color 'label_purple' is opaque: rgb(42.4%, 28.2%, 58.8%) hex: #6c4896
    70383 
    70384  
    70385 
    70386 > color name arf1v2 #EB70A8
    70387 
    70388 Color 'arf1v2' is opaque: rgb(92.2%, 43.9%, 65.9%) hex: #eb70a8
    70389 
    70390  
    70391 
    70392 > color name alphav1 #5786F5
    70393 
    70394 Color 'alphav1' is opaque: rgb(34.1%, 52.5%, 96.1%) hex: #5786f5
    70395 
    70396  
    70397 
    70398 > color name alphav2 #2A4B9B
    70399 
    70400 Color 'alphav2' is opaque: rgb(16.5%, 29.4%, 60.8%) hex: #2a4b9b
    70401 
    70402  
    70403 
    70404 > color name betapv1 #53EAF3
    70405 
    70406 Color 'betapv1' is opaque: rgb(32.5%, 91.8%, 95.3%) hex: #53eaf3
    70407 
    70408  
    70409 
    70410 > color name betapv2 #759ED9
    70411 
    70412 Color 'betapv2' is opaque: rgb(45.9%, 62%, 85.1%) hex: #759ed9
    70413 
    70414  
    70415 
    70416 > color name betav1 #37863D
    70417 
    70418 Color 'betav1' is opaque: rgb(21.6%, 52.5%, 23.9%) hex: #37863d
    70419 
    70420  
    70421 
    70422 > color name betav2 #207B35
    70423 
    70424 Color 'betav2' is opaque: rgb(12.5%, 48.2%, 20.8%) hex: #207b35
    70425 
    70426  
    70427 
    70428 > color name deltav1 #CE8041
    70429 
    70430 Color 'deltav1' is opaque: rgb(80.8%, 50.2%, 25.5%) hex: #ce8041
    70431 
    70432  
    70433 
    70434 > color name deltav2 #E97408
    70435 
    70436 Color 'deltav2' is opaque: rgb(91.4%, 45.5%, 3.14%) hex: #e97408
    70437 
    70438  
    70439 
    70440 > color name epsilonv1 #F06969
    70441 
    70442 Color 'epsilonv1' is opaque: rgb(94.1%, 41.2%, 41.2%) hex: #f06969
    70443 
    70444  
    70445 
    70446 > color name gammav1 #2AFF3C
    70447 
    70448 Color 'gammav1' is opaque: rgb(16.5%, 100%, 23.5%) hex: #2aff3c
    70449 
    70450  
    70451 
    70452 > color name gammav2 #61B230
    70453 
    70454 Color 'gammav2' is opaque: rgb(38%, 69.8%, 18.8%) hex: #61b230
    70455 
    70456  
    70457 
    70458 > color name zetav1 #E0C819
    70459 
    70460 Color 'zetav1' is opaque: rgb(87.8%, 78.4%, 9.8%) hex: #e0c819
    70461 
    70462  
    70463 
    70464 > color name zetav2 #EFE30C
    70465 
    70466 Color 'zetav2' is opaque: rgb(93.7%, 89%, 4.71%) hex: #efe30c
    70467 
    70468  
    70469 
    70470 > color name arf1v1 #FF76AF
    70471 
    70472 Color 'arf1v1' is opaque: rgb(100%, 46.3%, 68.6%) hex: #ff76af
    70473 
    70474  
    70475 
    70476 > color #24 label_red
    70477 
    70478 > color #60 white models
    70479 
    70480 > color #56 white models
    70481 
    70482 > hide #!57 models
    70483 
    70484 > hide #!58 models
    70485 
    70486 > hide #!59 models
    70487 
    70488 > color #38 alphav1
    70489 
    70490 > show #38 models
    70491 
    70492 > hide #!60 models
    70493 
    70494 > show #39 models
    70495 
    70496 > show #41 models
    70497 
    70498 > show #42 models
    70499 
    70500 > show #!43 models
    70501 
    70502 > show #!44 models
    70503 
    70504 > show #!45 models
    70505 
    70506 > show #!46 models
    70507 
    70508 > show #48 models
    70509 
    70510 > show #47 models
    70511 
    70512 > show #!49 models
    70513 
    70514 > show #50 models
    70515 
    70516 > show #51 models
    70517 
    70518 > show #52 models
    70519 
    70520 > show #53 models
    70521 
    70522 > show #!54 models
    70523 
    70524 > color #39 alphav1
    70525 
    70526 > color #41 betapv1
    70527 
    70528 > color #42 betapv1
    70529 
    70530 > color #43 betav1
    70531 
    70532 > color #44 betav1
    70533 
    70534 > color #45 betav1
    70535 
    70536 > color #46 deltav1
    70537 
    70538 > color #47 gammav1
    70539 
    70540 > color #47 gammav2
    70541 
    70542 > color #48 gammav2
    70543 
    70544 > color #49 gammav2
    70545 
    70546 > color #43 betav2
    70547 
    70548 > color #44 betav2
    70549 
    70550 > color #45 betav2
    70551 
    70552 > color #50 zetav1
    70553 
    70554 > color #51 arf1v1
    70555 
    70556 > color #52 arf1v1
    70557 
    70558 > color #53 arf1v1
    70559 
    70560 > color #47 #acacacff
    70561 
    70562 > color #47 gammav2
    70563 
    70564 > color #47 #61db30ff
    70565 
    70566 > color #47 #61c730ff
    70567 
    70568 > color #47 #58c730ff
    70569 
    70570 > color #47 #58de30ff
    70571 
    70572 > color name gammav3 #58DE30
    70573 
    70574 Color 'gammav3' is opaque: rgb(34.5%, 87.1%, 18.8%) hex: #58de30
    70575 
    70576  
    70577 
    70578 > color #48 gammav3
    70579 
    70580 > color #49 gammav3
    70581 
    70582 > color #51 arf1v2
    70583 
    70584 > color #52 arf1v2
    70585 
    70586 > color #53 arf1v2
    70587 
    70588 > color #38 alphav1
    70589 
    70590 > color #38 alphav2
    70591 
    70592 > color #39 alphav2
    70593 
    70594 > color #54 label_purple
    70595 
    70596 > color #55 label_purple
    70597 
    70598 > show #55 models
    70599 
    70600 > color #11 #801effff
    70601 
    70602 > color #11 #801ed1ff
    70603 
    70604 > color name label_purplev2 #7F1ED1
    70605 
    70606 Color 'label_purplev2' is opaque: rgb(49.8%, 11.8%, 82%) hex: #7f1ed1
    70607 
    70608  
    70609 
    70610 > color #54 label_purplev2
    70611 
    70612 > color #55 label_purplev2
    70613 
    70614 > combine #38 #39 #40 #41 #42 #43 #44 #45 #46 #47 #48 #49 #50 #51 #52 #53 #54
    70615 > #55
    70616 
    70617 Remapping chain ID 'D' in 20240711_copi_golph3_alpha_I592-G900.cif #39 to 'E' 
    70618 Remapping chain ID 'D' in fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif
    70619 #40 to 'I' 
    70620 Remapping chain ID 'E' in fold_hs_copa_b1_b2_d_e_g1_z1_golph3_1_47_model_0.cif
    70621 #40 to 'J' 
    70622 Remapping chain ID 'F' in 20240711_copi_golph3_betaprime_M1-S586.cif #41 to
    70623 'K' 
    70624 Remapping chain ID 'F' in 20240711_copi_golph3_betaprime_L587-D905.cif #42 to
    70625 'L' 
    70626 Remapping chain ID 'E' in 20240711_copi_golph3_beta_S711-L953.cif #43 to 'M' 
    70627 Remapping chain ID 'E' in 20240711_copi_golph3_beta_H311-E659.cif #44 to 'N' 
    70628 Remapping chain ID 'E' in 20240711_copi_golph3_beta_M1-H311_K660-A710.cif #45
    70629 to 'O' 
    70630 Remapping chain ID 'G' in 20240711_copi_golph3_delta_M1-S273.cif #46 to 'P' 
    70631 Remapping chain ID 'H' in 20240711_copi_golph3_gamma1_K300-F448.cif #47 to 'Q' 
    70632 Remapping chain ID 'H' in 20240711_copi_golph3_gamma1_M1-P299.cif #48 to 'R' 
    70633 Remapping chain ID 'H' in 20240711_copi_golph3_gammm1_T449-R609.cif #49 to 'S' 
    70634 Remapping chain ID 'I' in 20240711_copi_golph3_zeta1.cif #50 to 'T' 
    70635 Remapping chain ID 'B' in 20240711_copi_golph3_beta_Arf1_.cif #51 to 'U' 
    70636 Remapping chain ID 'C' in 20240711_copi_golph3_gamma_Arf1_.cif #52 to 'V' 
    70637 Remapping chain ID 'B' in 20240711_copi_golph3_third_Arf1.cif #53 to 'W' 
    70638 Remapping chain ID 'A' in 20240711_copi_golph3_golph3_M1-.cif #54 to 'X' 
    70639 Remapping chain ID 'A' in 20240711_copi_golph3_golph3_.cif #55 to 'Y' 
    70640 
    70641 > hide #38 models
    70642 
    70643 > hide #39 models
    70644 
    70645 > hide #41 models
    70646 
    70647 > hide #42 models
    70648 
    70649 > hide #!43 models
    70650 
    70651 > hide #!44 models
    70652 
    70653 > hide #!45 models
    70654 
    70655 > hide #!46 models
    70656 
    70657 > hide #47 models
    70658 
    70659 > hide #48 models
    70660 
    70661 > hide #!49 models
    70662 
    70663 > hide #50 models
    70664 
    70665 > hide #51 models
    70666 
    70667 > hide #52 models
    70668 
    70669 > hide #53 models
    70670 
    70671 > hide #!54 models
    70672 
    70673 > hide #55 models
    70674 
    70675 > rename #59 combined_model_COPI_GOLPH3_colorset1
    70676 
    70677 > rename #58 relion_locres_filtered_20240326_GT_colorset1.mrc
    70678 
    70679 > ui tool show "Color Zone"
    70680 
    70681 The cached device pixel ratio value was stale on window expose. Please file a
    70682 QTBUG which explains how to reproduce. 
    70683 
    70684 > show #!60 models
    70685 
    70686 > color zone #60 near #61 distance 10.26
    70687 
    70688 > color zone #60 near #61 distance 10.73
    70689 
    70690 > color zone #60 near #61 distance 4.91
    70691 
    70692 > volume #60 level 0.01316
    70693 
    70694 > close #61
    70695 
    70696 > combine #38 #39 #41 #42 #43 #44 #45 #46 #47 #48 #49 #50 #51 #52 #53 #54 #55
    70697 
    70698 Remapping chain ID 'D' in 20240711_copi_golph3_alpha_I592-G900.cif #39 to 'E' 
    70699 Remapping chain ID 'F' in 20240711_copi_golph3_betaprime_L587-D905.cif #42 to
    70700 'G' 
    70701 Remapping chain ID 'E' in 20240711_copi_golph3_beta_S711-L953.cif #43 to 'H' 
    70702 Remapping chain ID 'E' in 20240711_copi_golph3_beta_H311-E659.cif #44 to 'I' 
    70703 Remapping chain ID 'E' in 20240711_copi_golph3_beta_M1-H311_K660-A710.cif #45
    70704 to 'J' 
    70705 Remapping chain ID 'G' in 20240711_copi_golph3_delta_M1-S273.cif #46 to 'K' 
    70706 Remapping chain ID 'H' in 20240711_copi_golph3_gamma1_K300-F448.cif #47 to 'L' 
    70707 Remapping chain ID 'H' in 20240711_copi_golph3_gamma1_M1-P299.cif #48 to 'M' 
    70708 Remapping chain ID 'H' in 20240711_copi_golph3_gammm1_T449-R609.cif #49 to 'N' 
    70709 Remapping chain ID 'I' in 20240711_copi_golph3_zeta1.cif #50 to 'O' 
    70710 Remapping chain ID 'B' in 20240711_copi_golph3_third_Arf1.cif #53 to 'P' 
    70711 Remapping chain ID 'A' in 20240711_copi_golph3_golph3_.cif #55 to 'Q' 
    70712 
    70713 The cached device pixel ratio value was stale on window expose. Please file a
    70714 QTBUG which explains how to reproduce. 
    70715 
    70716 > color zone #60 near #61 distance 4.91
    70717 
    70718 > hide #!60 models
    70719 
    70720 > ui mousemode right select
    70721 
    70722 > select #61/K:255
    70723 
    70724 4 atoms, 3 bonds, 1 residue, 1 model selected 
    70725 
    70726 > delete sel
    70727 
    70728 > select #61/K:254
    70729 
    70730 8 atoms, 7 bonds, 1 residue, 1 model selected 
    70731 
    70732 > delete sel
    70733 
    70734 > select #61/K:252
    70735 
    70736 6 atoms, 5 bonds, 1 residue, 1 model selected 
    70737 
    70738 > select #61/K:253
    70739 
    70740 8 atoms, 7 bonds, 1 residue, 1 model selected 
    70741 
    70742 > delete sel
    70743 
    70744 > select clear
    70745 
    70746 > select #61/K:252
    70747 
    70748 6 atoms, 5 bonds, 1 residue, 1 model selected 
    70749 
    70750 > delete sel
    70751 
    70752 > select #61/K:251
    70753 
    70754 6 atoms, 5 bonds, 1 residue, 1 model selected 
    70755 
    70756 > delete sel
    70757 
    70758 > select #61/K:250
    70759 
    70760 8 atoms, 7 bonds, 1 residue, 1 model selected 
    70761 
    70762 > delete sel
    70763 
    70764 > select #61/K:249
    70765 
    70766 8 atoms, 7 bonds, 1 residue, 1 model selected 
    70767 
    70768 > delete sel
    70769 
    70770 > select #61/K:248
    70771 
    70772 7 atoms, 6 bonds, 1 residue, 1 model selected 
    70773 
    70774 > delete sel
    70775 
    70776 > show #!60 models
    70777 
    70778 > color single #60
    70779 
    70780 > color zone #60 near #61 distance 4.91
    70781 
    70782 > volume #60 level 0.008979
    70783 
    70784 > color zone #60 near #61 distance 4.85
    70785 
    70786 > color zone #60 near #61 distance 6.64
    70787 
    70788 > color #1 #ebebebff models
    70789 
    70790 > color #1 #d6d6d6ff models
    70791 
    70792 > volume #60 level 0.008
    70793 
    70794 > hide #!61 models
    70795 
    70796 > rename #61 combine_model_COPI_GOLPH3_colorset2
    70797 
    70798 > rename #60 relion_locres_filtered_20240326_GT_colorset2.mrc
    70799 
    70800 > save /Users/becca/Desktop/image1.png supersample 3
    70801 
    70802 > color #1 #d6d6d6cc models
    70803 
    70804 > color #1 #d6d6d69a models
    70805 
    70806 > color #1 #d6d6d699 models
    70807 
    70808 > show #!1 models
    70809 
    70810 > hide #!60 models
    70811 
    70812 > show #!61 models
    70813 
    70814 > save /Users/becca/Desktop/image2.png supersample 3
    70815 
    70816 > save /Users/becca/Desktop/image3.png supersample 3
    70817 
    70818 > hide #!61 models
    70819 
    70820 > show #!60 models
    70821 
    70822 > hide #!1 models
    70823 
    70824 > save /Users/becca/Desktop/image4.png supersample 3
    70825 
    70826 > color #60 #ffffffb9 models
    70827 
    70828 > color #60 #ffffffb7 models
    70829 
    70830 > color zone #60 near #61 distance 6.64
    70831 
    70832 > color #60 #ffffffb8 models
    70833 
    70834 > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3
    70835 > paper/Chimera sessions/20240808_COPI_leaf_AF3_for_figs_v6.cxs"
    70836 
    70837 > hide #!60 models
    70838 
    70839 > show #!61 models
    70840 
    70841 > color #61/chain Q label_purple
    70842 
    70843 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
    70844 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
    70845 'fromcartoons', 'fromribbons', or 'random' or a keyword 
    70846 
    70847 > color #61/chainQ label_purple
    70848 
    70849 > color #61/chainP label_purple
    70850 
    70851 > color #61/chainP blue
    70852 
    70853 > color #61/P blue
    70854 
    70855 > undo
    70856 
    70857 > color #61/Q label_purple
    70858 
    70859 > color #61/R label_purple
    70860 
    70861 > color #61/p label_purple
    70862 
    70863 > undo
    70864 
    70865 > color #61/o label_purple
    70866 
    70867 > undo
    70868 
    70869 > color #61/a label_purple
    70870 
    70871 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    70872 > dataset/Structure files/relion_locres_filtered_20240326_GT.mrc"
    70873 
    70874 Opened relion_locres_filtered_20240326_GT_colorset2.mrc as #62, grid size
    70875 292,292,292, pixel 1.71, shown at level 0.00473, step 2, values float32 
    70876 
    70877 > color #62 white models
    70878 
    70879 The cached device pixel ratio value was stale on window expose. Please file a
    70880 QTBUG which explains how to reproduce. 
    70881 
    70882 > volume #62 step 1
    70883 
    70884 > volume #62 level 0.008
    70885 
    70886 > select add #62
    70887 
    70888 2 models selected 
    70889 
    70890 > show #!60 models
    70891 
    70892 > ui mousemode right "translate selected models"
    70893 
    70894 > view matrix models #62,1,0,0,82.731,0,1,0,56.524,0,0,1,33.509
    70895 
    70896 > view matrix models #62,1,0,0,79.094,0,1,0,68.742,0,0,1,76.061
    70897 
    70898 > view matrix models #62,1,0,0,75.329,0,1,0,66.28,0,0,1,82.958
    70899 
    70900 > view matrix models #62,1,0,0,62.569,0,1,0,73.325,0,0,1,77.393
    70901 
    70902 > fitmap #62 inMap #1
    70903 
    70904 Fit map relion_locres_filtered_20240326_GT_colorset2.mrc in map
    70905 relion_locres_filtered_20240326_GT.mrc using 67258 points 
    70906 correlation = 1, correlation about mean = 1, overlap = 21.45 
    70907 steps = 52, shift = 2.4, angle = 0.977 degrees 
    70908  
    70909 Position of relion_locres_filtered_20240326_GT_colorset2.mrc (#62) relative to
    70910 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    70911 Matrix rotation and translation 
    70912 1.00000000 -0.00001875 -0.00002627 0.01893074 
    70913 0.00001875 1.00000000 -0.00002003 -0.00224731 
    70914 0.00002628 0.00002003 1.00000000 0.00132667 
    70915 Axis 0.52718994 -0.69167549 0.49361502 
    70916 Axis point 178.51353821 0.00000000 475.91658522 
    70917 Rotation angle (degrees) 0.00217651 
    70918 Shift along axis 0.01218937 
    70919  
    70920 
    70921 > select subtract #62
    70922 
    70923 Nothing selected 
    70924 
    70925 > color zone #62 near #61 distance 10.26
    70926 
    70927 > hide #!60 models
    70928 
    70929 > hide #!61 models
    70930 
    70931 > surface dust #62 size 17.1
    70932 
    70933 > show #!60 models
    70934 
    70935 > surface dust #60 size 17.1
    70936 
    70937 > surface dust #62 size 17.1
    70938 
    70939 > hide #!62 models
    70940 
    70941 > hide #!60 models
    70942 
    70943 > show #!62 models
    70944 
    70945 > save /Users/becca/Desktop/image5.png supersample 3
    70946 
    70947 > hide #!62 models
    70948 
    70949 > show #!61 models
    70950 
    70951 > show #!1 models
    70952 
    70953 > save /Users/becca/Desktop/image6.png supersample 3
    70954 
    70955 > hide #!1 models
    70956 
    70957 > show #!1 models
    70958 
    70959 > save /Users/becca/Desktop/image7.png supersample 3
    70960 
    70961 > hide #!1 models
    70962 
    70963 > hide #!61 models
    70964 
    70965 > show #!62 models
    70966 
    70967 > save /Users/becca/Desktop/image8.png supersample 3
    70968 
    70969 > save /Users/becca/Desktop/image9.png supersample 3
    70970 
    70971 > hide #!62 models
    70972 
    70973 > show #!61 models
    70974 
    70975 > show #!1 models
    70976 
    70977 > save /Users/becca/Desktop/image10.png supersample 3
    70978 
    70979 > hide #!1 models
    70980 
    70981 > color #61/b gammav2
    70982 
    70983 > color #61/c gammav2
    70984 
    70985 > color #61/d gammav2
    70986 
    70987 > color #61/e gammav2
    70988 
    70989 > color #61/f gammav2
    70990 
    70991 > color #61/g gammav2
    70992 
    70993 > color #61/f betapv2
    70994 
    70995 > color #61/g betapv2
    70996 
    70997 > color #61/h gammav2
    70998 
    70999 > color #61/i gammav2
    71000 
    71001 > color #61/j gammav2
    71002 
    71003 > color #61/k gammav2
    71004 
    71005 > color #61/l gammav2
    71006 
    71007 > color #61/m gammav2
    71008 
    71009 > color #61/n gammav2
    71010 
    71011 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and resources/COPI-Golph3
    71012 > dataset/Structure files/relion_locres_filtered_20240326_GT.mrc"
    71013 
    71014 Opened relion_locres_filtered_20240326_GT_colorset2.mrc as #63, grid size
    71015 292,292,292, pixel 1.71, shown at level 0.00473, step 2, values float32 
    71016 
    71017 > color #63 white models
    71018 
    71019 > select add #63
    71020 
    71021 2 models selected 
    71022 
    71023 > view matrix models #63,1,0,0,75.253,0,1,0,55.49,0,0,1,11.12
    71024 
    71025 > view matrix models #63,1,0,0,90.631,0,1,0,59.745,0,0,1,63.045
    71026 
    71027 > view matrix models #63,1,0,0,68.515,0,1,0,55.118,0,0,1,78.162
    71028 
    71029 > view matrix models #63,1,0,0,66.634,0,1,0,67.567,0,0,1,67.24
    71030 
    71031 The cached device pixel ratio value was stale on window expose. Please file a
    71032 QTBUG which explains how to reproduce. 
    71033 
    71034 > volume #63 step 1
    71035 
    71036 > volume #63 level 0.008
    71037 
    71038 > fitmap #63 inMap #1
    71039 
    71040 Fit map relion_locres_filtered_20240326_GT_colorset2.mrc in map
    71041 relion_locres_filtered_20240326_GT.mrc using 67258 points 
    71042 correlation = 0.5415, correlation about mean = 0.1363, overlap = 7.061 
    71043 steps = 116, shift = 7.07, angle = 5.74 degrees 
    71044  
    71045 Position of relion_locres_filtered_20240326_GT_colorset2.mrc (#63) relative to
    71046 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    71047 Matrix rotation and translation 
    71048 0.99362306 0.08167924 -0.07772850 -0.92565197 
    71049 -0.08058175 0.99660031 0.01715800 10.92285128 
    71050 0.07886570 -0.01078508 0.99682691 -23.17442071 
    71051 Axis -0.12297538 -0.68915930 -0.71409839 
    71052 Axis point 213.07603457 14.21459699 0.00000000 
    71053 Rotation angle (degrees) 6.52360209 
    71054 Shift along axis 9.13506435 
    71055  
    71056 
    71057 > show #!1 models
    71058 
    71059 > view matrix models
    71060 > #63,0.99499,0.069158,-0.072244,60.427,-0.06889,0.99761,0.0061881,84.855,0.072498,-0.0011802,0.99737,52.494
    71061 
    71062 > view matrix models
    71063 > #63,0.99499,0.069158,-0.072244,61.276,-0.06889,0.99761,0.0061881,84.838,0.072498,-0.0011802,0.99737,55.066
    71064 
    71065 > show #!60 models
    71066 
    71067 > hide #!60 models
    71068 
    71069 > show #!60 models
    71070 
    71071 > hide #!60 models
    71072 
    71073 > show #!60 models
    71074 
    71075 > hide #!60 models
    71076 
    71077 > hide #!61 models
    71078 
    71079 > fitmap #63 inMap #1
    71080 
    71081 Fit map relion_locres_filtered_20240326_GT_colorset2.mrc in map
    71082 relion_locres_filtered_20240326_GT.mrc using 67258 points 
    71083 correlation = 0.5415, correlation about mean = 0.1362, overlap = 7.06 
    71084 steps = 64, shift = 3.65, angle = 0.0144 degrees 
    71085  
    71086 Position of relion_locres_filtered_20240326_GT_colorset2.mrc (#63) relative to
    71087 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    71088 Matrix rotation and translation 
    71089 0.99360075 0.08181777 -0.07786785 -0.90541724 
    71090 -0.08073064 0.99659074 0.01701358 11.00212074 
    71091 0.07899439 -0.01061838 0.99681851 -23.23121300 
    71092 Axis -0.12141808 -0.68927119 -0.71425687 
    71093 Axis point 213.54257878 14.23471065 0.00000000 
    71094 Rotation angle (degrees) 6.53375156 
    71095 Shift along axis 9.11954274 
    71096  
    71097 
    71098 > view matrix models
    71099 > #63,0.99497,0.069297,-0.072381,72.42,-0.069041,0.9976,0.006042,87.797,0.072626,-0.0010144,0.99736,54.674
    71100 
    71101 > fitmap #63 inMap #1
    71102 
    71103 Fit map relion_locres_filtered_20240326_GT_colorset2.mrc in map
    71104 relion_locres_filtered_20240326_GT.mrc using 67258 points 
    71105 correlation = 1, correlation about mean = 1, overlap = 21.46 
    71106 steps = 152, shift = 9.34, angle = 6.54 degrees 
    71107  
    71108 Position of relion_locres_filtered_20240326_GT_colorset2.mrc (#63) relative to
    71109 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    71110 Matrix rotation and translation 
    71111 1.00000000 -0.00003458 0.00000150 0.00697228 
    71112 0.00003458 1.00000000 -0.00002441 0.00466924 
    71113 -0.00000150 0.00002441 1.00000000 -0.01150830 
    71114 Axis 0.57631042 0.03541164 0.81646330 
    71115 Axis point -140.35346721 288.49393815 0.00000000 
    71116 Rotation angle (degrees) 0.00242674 
    71117 Shift along axis -0.00521256 
    71118  
    71119 
    71120 > select subtract #63
    71121 
    71122 Nothing selected 
    71123 
    71124 > hide #!1 models
    71125 
    71126 > show #!62 models
    71127 
    71128 > hide #!62 models
    71129 
    71130 > show #!60 models
    71131 
    71132 > hide #!60 models
    71133 
    71134 > show #!61 models
    71135 
    71136 > hide #!61 models
    71137 
    71138 > color zone #63 near #61 distance 10.26
    71139 
    71140 > color zone #63 near #61 distance 10.66
    71141 
    71142 > color zone #63 near #61 distance 8.31
    71143 
    71144 > surface dust #63 size 17.1
    71145 
    71146 > show #!62 models
    71147 
    71148 > hide #!62 models
    71149 
    71150 > show #!62 models
    71151 
    71152 > hide #!62 models
    71153 
    71154 > show #!62 models
    71155 
    71156 > hide #!62 models
    71157 
    71158 > save /Users/becca/Desktop/image1.png supersample 3
    71159 
    71160 > hide #!63 models
    71161 
    71162 > show #!61 models
    71163 
    71164 > show #!1 models
    71165 
    71166 > save /Users/becca/Desktop/image2.png supersample 3
    71167 
    71168 > save /Users/becca/Desktop/image3.png supersample 3
    71169 
    71170 > hide #!1 models
    71171 
    71172 The cached device pixel ratio value was stale on window expose. Please file a
    71173 QTBUG which explains how to reproduce. 
    71174 
    71175 > hide #!61 models
    71176 
    71177 > show #!63 models
    71178 
    71179 > save /Users/becca/Desktop/image4.png supersample 3
    71180 
    71181 > save /Users/becca/Desktop/image5.png supersample 3
    71182 
    71183 > hide #!63 models
    71184 
    71185 > show #!62 models
    71186 
    71187 > hide #!62 models
    71188 
    71189 > show #!62 models
    71190 
    71191 > hide #!62 models
    71192 
    71193 > show #!61 models
    71194 
    71195 > show #!1 models
    71196 
    71197 > save /Users/becca/Desktop/image6.png supersample 3
    71198 
    71199 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    71200 > resources/Processing/Files from
    71201 > csparc/cryosparc_P126_J2191_class_02_final_volume.mrc"
    71202 
    71203 Opened cryosparc_P126_J2191_class_02_final_volume.mrc as #64, grid size
    71204 180,180,180, pixel 2.42, shown at level 0.333, step 1, values float32 
    71205 
    71206 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    71207 > resources/Processing/Files from
    71208 > csparc/cryosparc_P126_J2191_class_01_final_volume.mrc"
    71209 
    71210 Opened cryosparc_P126_J2191_class_01_final_volume.mrc as #65, grid size
    71211 180,180,180, pixel 2.42, shown at level 0.333, step 1, values float32 
    71212 
    71213 > open "/Users/becca/Desktop/Postdoc/COPI notebooks and
    71214 > resources/Processing/Files from
    71215 > csparc/cryosparc_P126_J2191_class_00_final_volume.mrc"
    71216 
    71217 Opened cryosparc_P126_J2191_class_00_final_volume.mrc as #66, grid size
    71218 180,180,180, pixel 2.42, shown at level 0.337, step 1, values float32 
    71219 
    71220 > close #66
    71221 
    71222 > close #65
    71223 
    71224 > close #64
    71225 
    71226 > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3
    71227 > paper/Chimera sessions/20240808_COPI_leaf_AF3_for_figs_v7.cxs"
    71228 
    71229 ——— End of log from Fri Aug 9 13:21:55 2024 ———
    71230 
    71231 opened ChimeraX session 
    71232 
    71233 > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3
    71234 > paper/Chimera sessions/20240808_COPI_leaf_AF3_for_figs_v7_with_files.cxs"
    71235 > includeMaps true
    71236 
    71237 ——— End of log from Wed Sep 25 22:56:27 2024 ———
    71238 
    71239 opened ChimeraX session 
    71240 
    71241 The cached device pixel ratio value was stale on window expose. Please file a
    71242 QTBUG which explains how to reproduce. 
    71243 
    71244 > show #!62 models
    71245 
    71246 > hide #!1 models
    71247 
    71248 > hide #!61 models
    71249 
    71250 > hide #!62 models
    71251 
    71252 > show #!63 models
    71253 
    71254 > save /Users/becca/Desktop/image1.png supersample 3
    71255 
    71256 > save /Users/becca/Desktop/image2.png supersample 3
    71257 
    71258 > hide #!63 models
    71259 
    71260 > show #!1 models
    71261 
    71262 > show #!61 models
    71263 
    71264 > save /Users/becca/Desktop/image3.png supersample 3
    71265 
    71266 > hide #!1 models
    71267 
    71268 > ui mousemode right select
    71269 
    71270 > select #61/O:72
    71271 
    71272 6 atoms, 5 bonds, 1 residue, 1 model selected 
    71273 
    71274 > show sel atoms
    71275 
    71276 > style sel stick
    71277 
    71278 Changed 6 atom styles 
    71279 
    71280 > color sel red
    71281 
    71282 > select #61/O:73
    71283 
    71284 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71285 
    71286 > show sel atoms
    71287 
    71288 > style sel stick
    71289 
    71290 Changed 8 atom styles 
    71291 
    71292 > color sel red
    71293 
    71294 > select #61/O:74
    71295 
    71296 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71297 
    71298 > show sel atoms
    71299 
    71300 > style sel stick
    71301 
    71302 Changed 8 atom styles 
    71303 
    71304 > color sel red
    71305 
    71306 > select #61/O:56
    71307 
    71308 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71309 
    71310 > select clear
    71311 
    71312 > select #61/O:21
    71313 
    71314 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71315 
    71316 > select #61/O:108
    71317 
    71318 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71319 
    71320 > select #61/C:68
    71321 
    71322 7 atoms, 6 bonds, 1 residue, 1 model selected 
    71323 
    71324 > select #61/O:107
    71325 
    71326 9 atoms, 8 bonds, 1 residue, 1 model selected 
    71327 
    71328 > show sel atoms
    71329 
    71330 > style sel stick
    71331 
    71332 Changed 9 atom styles 
    71333 
    71334 > color sel red
    71335 
    71336 > select #61/Q:227
    71337 
    71338 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71339 
    71340 > show sel atoms
    71341 
    71342 > style sel stick
    71343 
    71344 Changed 8 atom styles 
    71345 
    71346 > color sel red
    71347 
    71348 > select #61/Q:226
    71349 
    71350 7 atoms, 6 bonds, 1 residue, 1 model selected 
    71351 
    71352 > show sel atoms
    71353 
    71354 > style sel stick
    71355 
    71356 Changed 7 atom styles 
    71357 
    71358 > color sel red
    71359 
    71360 > select #61/Q:225
    71361 
    71362 14 atoms, 15 bonds, 1 residue, 1 model selected 
    71363 
    71364 > show sel atoms
    71365 
    71366 > style sel stick
    71367 
    71368 Changed 14 atom styles 
    71369 
    71370 > color sel red
    71371 
    71372 > select #61/Q:224
    71373 
    71374 9 atoms, 8 bonds, 1 residue, 1 model selected 
    71375 
    71376 > show sel atoms
    71377 
    71378 > style sel stick
    71379 
    71380 Changed 9 atom styles 
    71381 
    71382 > color sel red
    71383 
    71384 > select clear
    71385 
    71386 > select #61/Q:260
    71387 
    71388 9 atoms, 8 bonds, 1 residue, 1 model selected 
    71389 
    71390 > select #61/Q:259
    71391 
    71392 9 atoms, 8 bonds, 1 residue, 1 model selected 
    71393 
    71394 > show sel atoms
    71395 
    71396 > style sel stick
    71397 
    71398 Changed 9 atom styles 
    71399 
    71400 > color sel red
    71401 
    71402 > show #!1 models
    71403 
    71404 > select clear
    71405 
    71406 > save /Users/becca/Desktop/image4.png supersample 3
    71407 
    71408 > ui tool show "Side View"
    71409 
    71410 > save /Users/becca/Desktop/image5.png supersample 3
    71411 
    71412 > save /Users/becca/Desktop/image6.png supersample 3
    71413 
    71414 > save /Users/becca/Desktop/image7.png supersample 3
    71415 
    71416 > hide #!1 models
    71417 
    71418 Drag select of 48 atoms, 66 residues, 43 bonds 
    71419 
    71420 > hide sel atoms
    71421 
    71422 > select clear
    71423 
    71424 > select #61/O:74
    71425 
    71426 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71427 
    71428 > select #61/O:73
    71429 
    71430 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71431 
    71432 > select #61/O:72
    71433 
    71434 6 atoms, 5 bonds, 1 residue, 1 model selected 
    71435 
    71436 > color sel zetav2
    71437 
    71438 > select #61/O:73
    71439 
    71440 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71441 
    71442 > color sel zetav2
    71443 
    71444 > select #61/O:74
    71445 
    71446 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71447 
    71448 > color sel zetav2
    71449 
    71450 > select #61/O:107
    71451 
    71452 9 atoms, 8 bonds, 1 residue, 1 model selected 
    71453 
    71454 > color sel zetav2
    71455 
    71456 > select #61/F:177
    71457 
    71458 7 atoms, 7 bonds, 1 residue, 1 model selected 
    71459 
    71460 > select #61/Q:259
    71461 
    71462 9 atoms, 8 bonds, 1 residue, 1 model selected 
    71463 
    71464 > color sel golph
    71465 
    71466 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
    71467 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
    71468 'fromcartoons', 'fromribbons', or 'random' or a keyword 
    71469 
    71470 > color sel golphv2
    71471 
    71472 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
    71473 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
    71474 'fromcartoons', 'fromribbons', or 'random' or a keyword 
    71475 
    71476 > color sel golph3v2
    71477 
    71478 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
    71479 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
    71480 'fromcartoons', 'fromribbons', or 'random' or a keyword 
    71481 
    71482 > color sel golph3
    71483 
    71484 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
    71485 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
    71486 'fromcartoons', 'fromribbons', or 'random' or a keyword 
    71487 
    71488 > color sel purple
    71489 
    71490 > select #61/F:315
    71491 
    71492 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71493 
    71494 > color sel golph3
    71495 
    71496 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
    71497 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
    71498 'fromcartoons', 'fromribbons', or 'random' or a keyword 
    71499 
    71500 > color sel darkred purple
    71501 
    71502 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
    71503 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword 
    71504 
    71505 > color sel purple
    71506 
    71507 > undo
    71508 
    71509 > select clear
    71510 
    71511 [Repeated 2 time(s)]
    71512 
    71513 > select #61/Q:224
    71514 
    71515 9 atoms, 8 bonds, 1 residue, 1 model selected 
    71516 
    71517 > color sel purple
    71518 
    71519 > select #61/Q:225
    71520 
    71521 14 atoms, 15 bonds, 1 residue, 1 model selected 
    71522 
    71523 > color sel purple
    71524 
    71525 > select #61/Q:226
    71526 
    71527 7 atoms, 6 bonds, 1 residue, 1 model selected 
    71528 
    71529 > color sel purple
    71530 
    71531 > select #61/Q:227
    71532 
    71533 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71534 
    71535 > color sel purple
    71536 
    71537 > select #61/Q:189
    71538 
    71539 7 atoms, 6 bonds, 1 residue, 1 model selected 
    71540 
    71541 > show sel atoms
    71542 
    71543 > show sel cartoons
    71544 
    71545 > style sel stick
    71546 
    71547 Changed 7 atom styles 
    71548 
    71549 > color sel red
    71550 
    71551 > select #61/Q:190
    71552 
    71553 9 atoms, 8 bonds, 1 residue, 1 model selected 
    71554 
    71555 > select #61/Q:191
    71556 
    71557 9 atoms, 8 bonds, 1 residue, 1 model selected 
    71558 
    71559 > show sel atoms
    71560 
    71561 > style sel stick
    71562 
    71563 Changed 9 atom styles 
    71564 
    71565 > color sel red
    71566 
    71567 > select #61/Q:192
    71568 
    71569 9 atoms, 8 bonds, 1 residue, 1 model selected 
    71570 
    71571 > select #61/Q:193
    71572 
    71573 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71574 
    71575 > select #61/Q:194
    71576 
    71577 11 atoms, 11 bonds, 1 residue, 1 model selected 
    71578 
    71579 > select #61/Q:199
    71580 
    71581 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71582 
    71583 > select #61/Q:198
    71584 
    71585 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71586 
    71587 > select #61/Q:200
    71588 
    71589 7 atoms, 6 bonds, 1 residue, 1 model selected 
    71590 
    71591 > show sel atoms
    71592 
    71593 > style sel stick
    71594 
    71595 Changed 7 atom styles 
    71596 
    71597 > color sel red
    71598 
    71599 > select #61/D:136
    71600 
    71601 10 atoms, 10 bonds, 1 residue, 1 model selected 
    71602 
    71603 > show sel atoms
    71604 
    71605 > show sel cartoons
    71606 
    71607 > style sel stick
    71608 
    71609 Changed 10 atom styles 
    71610 
    71611 > color sel red
    71612 
    71613 > select clear
    71614 
    71615 > select #61/D:135
    71616 
    71617 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71618 
    71619 > show sel atoms
    71620 
    71621 > show sel cartoons
    71622 
    71623 > style sel stick
    71624 
    71625 Changed 8 atom styles 
    71626 
    71627 > color sel red
    71628 
    71629 > select #61/D:137
    71630 
    71631 12 atoms, 12 bonds, 1 residue, 1 model selected 
    71632 
    71633 > style sel stick
    71634 
    71635 Changed 12 atom styles 
    71636 
    71637 > show sel atoms
    71638 
    71639 > color sel red
    71640 
    71641 > select clear
    71642 
    71643 > select #61/Q:182
    71644 
    71645 7 atoms, 6 bonds, 1 residue, 1 model selected 
    71646 
    71647 > select #61/Q:183
    71648 
    71649 9 atoms, 8 bonds, 1 residue, 1 model selected 
    71650 
    71651 > show sel atoms
    71652 
    71653 > style sel stick
    71654 
    71655 Changed 9 atom styles 
    71656 
    71657 > color sel red
    71658 
    71659 > select clear
    71660 
    71661 > select #61/Q:179
    71662 
    71663 9 atoms, 8 bonds, 1 residue, 1 model selected 
    71664 
    71665 > show sel atoms
    71666 
    71667 > style sel stick
    71668 
    71669 Changed 9 atom styles 
    71670 
    71671 > color sel red
    71672 
    71673 > select #61/Q:175
    71674 
    71675 9 atoms, 8 bonds, 1 residue, 1 model selected 
    71676 
    71677 > show sel atoms
    71678 
    71679 > style sel stick
    71680 
    71681 Changed 9 atom styles 
    71682 
    71683 > color sel red
    71684 
    71685 > select #61/Q:56
    71686 
    71687 9 atoms, 8 bonds, 1 residue, 1 model selected 
    71688 
    71689 > show sel atoms
    71690 
    71691 > style sel stick
    71692 
    71693 Changed 9 atom styles 
    71694 
    71695 > color sel red
    71696 
    71697 > select #61/D:312
    71698 
    71699 4 atoms, 3 bonds, 1 residue, 1 model selected 
    71700 
    71701 > select clear
    71702 
    71703 [Repeated 1 time(s)]
    71704 
    71705 > select #61/D:10
    71706 
    71707 5 atoms, 4 bonds, 1 residue, 1 model selected 
    71708 
    71709 > select #61/D:312
    71710 
    71711 4 atoms, 3 bonds, 1 residue, 1 model selected 
    71712 
    71713 > select #61/D:311
    71714 
    71715 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71716 
    71717 > select #61/D:290
    71718 
    71719 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71720 
    71721 > show sel atoms
    71722 
    71723 > style sel stick
    71724 
    71725 Changed 8 atom styles 
    71726 
    71727 > color sel red
    71728 
    71729 > select #61/D:292
    71730 
    71731 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71732 
    71733 > show sel atoms
    71734 
    71735 > style sel stick
    71736 
    71737 Changed 8 atom styles 
    71738 
    71739 > color sel red
    71740 
    71741 > show #!1 models
    71742 
    71743 > select clear
    71744 
    71745 > save /Users/becca/Desktop/image8.png supersample 3
    71746 
    71747 > save /Users/becca/Desktop/image9.png supersample 3
    71748 
    71749 > hide #!1 models
    71750 
    71751 > select #61/D:94
    71752 
    71753 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71754 
    71755 > show sel atoms
    71756 
    71757 > style sel stick
    71758 
    71759 Changed 8 atom styles 
    71760 
    71761 > color sel red
    71762 
    71763 > show #!1 models
    71764 
    71765 > select clear
    71766 
    71767 > save /Users/becca/Desktop/image10.png supersample 3
    71768 
    71769 > save /Users/becca/Desktop/image11.png supersample 3
    71770 
    71771 > hide #!1 models
    71772 
    71773 > select #61/A:11
    71774 
    71775 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71776 
    71777 > select #61/A:12
    71778 
    71779 7 atoms, 6 bonds, 1 residue, 1 model selected 
    71780 
    71781 > select #61/A:13
    71782 
    71783 9 atoms, 8 bonds, 1 residue, 1 model selected 
    71784 
    71785 > select #61/A:15
    71786 
    71787 11 atoms, 10 bonds, 1 residue, 1 model selected 
    71788 
    71789 > select #61/A:14
    71790 
    71791 11 atoms, 10 bonds, 1 residue, 1 model selected 
    71792 
    71793 > show sel atoms
    71794 
    71795 > style sel stick
    71796 
    71797 Changed 11 atom styles 
    71798 
    71799 > color sel red
    71800 
    71801 > select #61/L:444
    71802 
    71803 9 atoms, 8 bonds, 1 residue, 1 model selected 
    71804 
    71805 > select #61/L:443
    71806 
    71807 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71808 
    71809 > select #61/L:444
    71810 
    71811 9 atoms, 8 bonds, 1 residue, 1 model selected 
    71812 
    71813 > select #61/L:445
    71814 
    71815 8 atoms, 7 bonds, 1 residue, 1 model selected 
    71816 
    71817 > show sel atoms
    71818 
    71819 > style sel stick
    71820 
    71821 Changed 8 atom styles 
    71822 
    71823 > color sel red
    71824 
    71825 > select #61/L:441
    71826 
    71827 9 atoms, 8 bonds, 1 residue, 1 model selected 
    71828 
    71829 > select #61/L:442
    71830 
    71831 11 atoms, 11 bonds, 1 residue, 1 model selected 
    71832 
    71833 > select #61/L:440
    71834 
    71835 6 atoms, 5 bonds, 1 residue, 1 model selected 
    71836 
    71837 > select #61/C:28
    71838 
    71839 5 atoms, 4 bonds, 1 residue, 1 model selected 
    71840 
    71841 > select #61/L:444
    71842 
    71843 9 atoms, 8 bonds, 1 residue, 1 model selected 
    71844 
    71845 > select #61/C:31
    71846 
    71847 7 atoms, 6 bonds, 1 residue, 1 model selected 
    71848 
    71849 > select #61/L:447
    71850 
    71851 9 atoms, 8 bonds, 1 residue, 1 model selected 
    71852 
    71853 > show sel atoms
    71854 
    71855 > style sel stick
    71856 
    71857 Changed 9 atom styles 
    71858 
    71859 > color sel red
    71860 
    71861 > select clear
    71862 
    71863 > show #!1 models
    71864 
    71865 > save /Users/becca/Desktop/image12.png supersample 3
    71866 
    71867 > save /Users/becca/Desktop/image13.png supersample 3
    71868 
    71869 > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3
    71870 > paper/Chimera sessions/20241009_COPI_leaf_AF3_for_figs_v8.cxs"
    71871 
    71872 ——— End of log from Wed Oct 9 16:21:15 2024 ———
    71873 
    71874 opened ChimeraX session 
    71875 
    71876 > show #!62 models
    71877 
    71878 > hide #!62 models
    71879 
    71880 > show #!63 models
    71881 
    71882 > hide #!63 models
    71883 
    71884 > show #!33 models
    71885 
    71886 > hide #!33 models
    71887 
    71888 > show #!33 models
    71889 
    71890 > hide #!33 models
    71891 
    71892 > show #!40 models
    71893 
    71894 > hide #!40 models
    71895 
    71896 > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3
    71897 > paper/Chimera sessions/20241017_COPI_leaf_all_AF3_results_aligned.cxs"
    71898 
    71899 > close #2
    71900 
    71901 > close #5-6#3-4
    71902 
    71903 > close #8#7,9
    71904 
    71905 > close #10-12
    71906 
    71907 > close #13-15
    71908 
    71909 > close #16-18
    71910 
    71911 > close #19-21
    71912 
    71913 > close #22-23
    71914 
    71915 > close #24
    71916 
    71917 > close #26
    71918 
    71919 > close #27
    71920 
    71921 > close #28
    71922 
    71923 > close #29
    71924 
    71925 > close #30
    71926 
    71927 > close #31
    71928 
    71929 > close #32
    71930 
    71931 > close #33
    71932 
    71933 > close #35
    71934 
    71935 > close #36
    71936 
    71937 > close #37
    71938 
    71939 > show #!40 models
    71940 
    71941 > hide #!40 models
    71942 
    71943 > show #!56 models
    71944 
    71945 > hide #!56 models
    71946 
    71947 > show #!57 models
    71948 
    71949 > hide #!57 models
    71950 
    71951 > ui tool show "Side View"
    71952 
    71953 > show #!60 models
    71954 
    71955 > hide #!60 models
    71956 
    71957 > show #!58 models
    71958 
    71959 > close #58
    71960 
    71961 > show #!59 models
    71962 
    71963 > hide #!1 models
    71964 
    71965 > hide #!61 models
    71966 
    71967 > hide #!59 models
    71968 
    71969 > show #!61 models
    71970 
    71971 > hide #!61 models
    71972 
    71973 > show #!59 models
    71974 
    71975 > close #59
    71976 
    71977 > show #!60 models
    71978 
    71979 > hide #!60 models
    71980 
    71981 > show #!61 models
    71982 
    71983 > show #!62 models
    71984 
    71985 > hide #!62 models
    71986 
    71987 > show #!63 models
    71988 
    71989 > hide #!63 models
    71990 
    71991 > hide #!61 models
    71992 
    71993 > show #!62 models
    71994 
    71995 > hide #!62 models
    71996 
    71997 > show #!60 models
    71998 
    71999 > hide #!60 models
    72000 
    72001 > show #!62 models
    72002 
    72003 > hide #!62 models
    72004 
    72005 > show #!60 models
    72006 
    72007 > hide #!60 models
    72008 
    72009 > show #!63 models
    72010 
    72011 > hide #!63 models
    72012 
    72013 > show #!60 models
    72014 
    72015 > close #60
    72016 
    72017 > show #!61 models
    72018 
    72019 > hide #!61 models
    72020 
    72021 > show #!63 models
    72022 
    72023 > hide #!63 models
    72024 
    72025 > show #!61 models
    72026 
    72027 > hide #!61 models
    72028 
    72029 > show #!62 models
    72030 
    72031 > show #!63 models
    72032 
    72033 > hide #!63 models
    72034 
    72035 > close #62
    72036 
    72037 > show #!57 models
    72038 
    72039 > show #!56 models
    72040 
    72041 > hide #!56 models
    72042 
    72043 > select #57/A
    72044 
    72045 3251 atoms, 3250 bonds, 813 residues, 1 model selected 
    72046 
    72047 > color sel alphav2
    72048 
    72049 > select #57/B
    72050 
    72051 3198 atoms, 3193 bonds, 4 pseudobonds, 800 residues, 2 models selected 
    72052 
    72053 > color sel betav2
    72054 
    72055 > select #57/C
    72056 
    72057 3371 atoms, 3370 bonds, 843 residues, 1 model selected 
    72058 
    72059 > color sel betapv2
    72060 
    72061 > select #57/D
    72062 
    72063 706 atoms, 704 bonds, 1 pseudobond, 177 residues, 2 models selected 
    72064 
    72065 > color sel deltav2
    72066 
    72067 > select #57/G
    72068 
    72069 3190 atoms, 3188 bonds, 1 pseudobond, 798 residues, 2 models selected 
    72070 
    72071 > color sel gammav2
    72072 
    72073 > select #57/K
    72074 
    72075 2239 atoms, 2237 bonds, 1 pseudobond, 560 residues, 2 models selected 
    72076 
    72077 > color sel gammav2
    72078 
    72079 > select #57/L
    72080 
    72081 555 atoms, 554 bonds, 139 residues, 1 model selected 
    72082 
    72083 > color sel zetav2
    72084 
    72085 > select #57/Z
    72086 
    72087 555 atoms, 554 bonds, 139 residues, 1 model selected 
    72088 
    72089 > color sel zetav2
    72090 
    72091 > select #57/F
    72092 
    72093 635 atoms, 634 bonds, 159 residues, 1 model selected 
    72094 
    72095 > color sel arf1v2
    72096 
    72097 > select #57/M
    72098 
    72099 635 atoms, 634 bonds, 159 residues, 1 model selected 
    72100 
    72101 > color sel arf1v2
    72102 
    72103 > select #57/R
    72104 
    72105 635 atoms, 634 bonds, 159 residues, 1 model selected 
    72106 
    72107 > color sel arf1v2
    72108 
    72109 > select add #57
    72110 
    72111 18970 atoms, 18952 bonds, 7 pseudobonds, 4746 residues, 2 models selected 
    72112 
    72113 > select subtract #57
    72114 
    72115 Nothing selected 
    72116 
    72117 > hide #!57 models
    72118 
    72119 > show #!56 models
    72120 
    72121 > show #!57 models
    72122 
    72123 > hide #!57 models
    72124 
    72125 > hide #!56 models
    72126 
    72127 > show #!61 models
    72128 
    72129 > show #!63 models
    72130 
    72131 > hide #!63 models
    72132 
    72133 > show #!1 models
    72134 
    72135 > show #!40 models
    72136 
    72137 > hide #!40 models
    72138 
    72139 > hide #!34 models
    72140 
    72141 > show #!34 models
    72142 
    72143 > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3
    72144 > paper/Chimera sessions/20241017_COPI_leaf_all_AF3_results_aligned.cxs"
    72145 
    72146 ——— End of log from Thu Oct 17 14:08:25 2024 ———
    72147 
    72148 opened ChimeraX session 
    72149 
    72150 > ui tool show "Side View"
    72151 
    72152 The cached device pixel ratio value was stale on window expose. Please file a
    72153 QTBUG which explains how to reproduce. 
    72154 
    72155 > hide #!61 models
    72156 
    72157 > show #!61 models
    72158 
    72159 > hide #!61 models
    72160 
    72161 > show #!61 models
    72162 
    72163 > hide #!61 atoms
    72164 
    72165 > show #!57 models
    72166 
    72167 > hide #!57 models
    72168 
    72169 > show #!57 models
    72170 
    72171 > volume #1 level 0.00726
    72172 
    72173 > hide #!57 models
    72174 
    72175 > hide #!34 models
    72176 
    72177 > show #!34 models
    72178 
    72179 > show #34.1 models
    72180 
    72181 > show #34.2 models
    72182 
    72183 > show #34.3 models
    72184 
    72185 > show #34.4 models
    72186 
    72187 > show #34.5 models
    72188 
    72189 > show #34.6 models
    72190 
    72191 > show #34.7 models
    72192 
    72193 > show #34.8 models
    72194 
    72195 > show #34.9 models
    72196 
    72197 > hide #34.9 models
    72198 
    72199 > hide #34.7 models
    72200 
    72201 > hide #34.8 models
    72202 
    72203 > hide #34.6 models
    72204 
    72205 > hide #34.5 models
    72206 
    72207 > hide #34.4 models
    72208 
    72209 > hide #34.3 models
    72210 
    72211 > hide #34.2 models
    72212 
    72213 > hide #34.1 models
    72214 
    72215 > hide #!34 models
    72216 
    72217 > color list
    72218 
    72219 19 custom colors: alphav1
    72220 
    72221 , alphav2
    72222 
    72223 , arf1v1
    72224 
    72225 , arf1v2
    72226 
    72227 , betapv1
    72228 
    72229 , betapv2
    72230 
    72231 , betav1
    72232 
    72233 , betav2
    72234 
    72235 , deltav1
    72236 
    72237 , deltav2
    72238 
    72239 , epsilonv1
    72240 
    72241 , gammav1
    72242 
    72243 , gammav2
    72244 
    72245 , gammav3
    72246 
    72247 , label_purple
    72248 
    72249 , label_purplev2
    72250 
    72251 , label_red
    72252 
    72253 , zetav1
    72254 
    72255 , and zetav2
    72256 
    72257 . 
    72258 248 builtin colors: alice blue
    72259 
    72260 , aliceblue
    72261 
    72262 , antique white
    72263 
    72264 , antiquewhite
    72265 
    72266 , aqua
    72267 
    72268 , aquamarine
    72269 
    72270 , azure
    72271 
    72272 , beige
    72273 
    72274 , bisque
    72275 
    72276 , black
    72277 
    72278 , blanched almond
    72279 
    72280 , blanchedalmond
    72281 
    72282 , blue
    72283 
    72284 , blue violet
    72285 
    72286 , blueviolet
    72287 
    72288 , brown
    72289 
    72290 , burly wood
    72291 
    72292 , burlywood
    72293 
    72294 , cadet blue
    72295 
    72296 , cadetblue
    72297 
    72298 , chartreuse
    72299 
    72300 , chocolate
    72301 
    72302 , coral
    72303 
    72304 , cornflower blue
    72305 
    72306 , cornflowerblue
    72307 
    72308 , cornsilk
    72309 
    72310 , crimson
    72311 
    72312 , cyan
    72313 
    72314 , dark blue
    72315 
    72316 , dark cyan
    72317 
    72318 , dark goldenrod
    72319 
    72320 , dark gray
    72321 
    72322 , dark green
    72323 
    72324 , dark grey
    72325 
    72326 , dark khaki
    72327 
    72328 , dark magenta
    72329 
    72330 , dark olive green
    72331 
    72332 , dark orange
    72333 
    72334 , dark orchid
    72335 
    72336 , dark red
    72337 
    72338 , dark salmon
    72339 
    72340 , dark sea green
    72341 
    72342 , dark seagreen
    72343 
    72344 , dark slate blue
    72345 
    72346 , dark slate gray
    72347 
    72348 , dark slate grey
    72349 
    72350 , dark turquoise
    72351 
    72352 , dark violet
    72353 
    72354 , darkblue
    72355 
    72356 , darkcyan
    72357 
    72358 , darkgoldenrod
    72359 
    72360 , darkgray
    72361 
    72362 , darkgreen
    72363 
    72364 , darkgrey
    72365 
    72366 , darkkhaki
    72367 
    72368 , darkmagenta
    72369 
    72370 , darkolivegreen
    72371 
    72372 , darkorange
    72373 
    72374 , darkorchid
    72375 
    72376 , darkred
    72377 
    72378 , darksalmon
    72379 
    72380 , darkseagreen
    72381 
    72382 , darkslateblue
    72383 
    72384 , darkslategray
    72385 
    72386 , darkslategrey
    72387 
    72388 , darkturquoise
    72389 
    72390 , darkviolet
    72391 
    72392 , deep pink
    72393 
    72394 , deep sky blue
    72395 
    72396 , deep skyblue
    72397 
    72398 , deeppink
    72399 
    72400 , deepskyblue
    72401 
    72402 , dim gray
    72403 
    72404 , dim grey
    72405 
    72406 , dimgray
    72407 
    72408 , dimgrey
    72409 
    72410 , dodger blue
    72411 
    72412 , dodgerblue
    72413 
    72414 , fire brick
    72415 
    72416 , firebrick
    72417 
    72418 , floral white
    72419 
    72420 , floralwhite
    72421 
    72422 , forest green
    72423 
    72424 , forestgreen
    72425 
    72426 , fuchsia
    72427 
    72428 , gainsboro
    72429 
    72430 , ghost white
    72431 
    72432 , ghostwhite
    72433 
    72434 , gold
    72435 
    72436 , goldenrod
    72437 
    72438 , gray
    72439 
    72440 , green
    72441 
    72442 , green yellow
    72443 
    72444 , greenyellow
    72445 
    72446 , grey
    72447 
    72448 , honeydew
    72449 
    72450 , hot pink
    72451 
    72452 , hotpink
    72453 
    72454 , indian red
    72455 
    72456 , indianred
    72457 
    72458 , indigo
    72459 
    72460 , ivory
    72461 
    72462 , khaki
    72463 
    72464 , lavender
    72465 
    72466 , lavender blush
    72467 
    72468 , lavenderblush
    72469 
    72470 , lawn green
    72471 
    72472 , lawngreen
    72473 
    72474 , lemon chiffon
    72475 
    72476 , lemonchiffon
    72477 
    72478 , light blue
    72479 
    72480 , light coral
    72481 
    72482 , light cyan
    72483 
    72484 , light goldenrod yellow
    72485 
    72486 , light gray
    72487 
    72488 , light green
    72489 
    72490 , light grey
    72491 
    72492 , light pink
    72493 
    72494 , light salmon
    72495 
    72496 , light sea green
    72497 
    72498 , light seagreen
    72499 
    72500 , light sky blue
    72501 
    72502 , light skyblue
    72503 
    72504 , light slate gray
    72505 
    72506 , light slate grey
    72507 
    72508 , light steel blue
    72509 
    72510 , light yellow
    72511 
    72512 , lightblue
    72513 
    72514 , lightcoral
    72515 
    72516 , lightcyan
    72517 
    72518 , lightgoldenrodyellow
    72519 
    72520 , lightgray
    72521 
    72522 , lightgreen
    72523 
    72524 , lightgrey
    72525 
    72526 , lightpink
    72527 
    72528 , lightsalmon
    72529 
    72530 , lightseagreen
    72531 
    72532 , lightskyblue
    72533 
    72534 , lightslategray
    72535 
    72536 , lightslategrey
    72537 
    72538 , lightsteelblue
    72539 
    72540 , lightyellow
    72541 
    72542 , lime
    72543 
    72544 , lime green
    72545 
    72546 , limegreen
    72547 
    72548 , linen
    72549 
    72550 , magenta
    72551 
    72552 , maroon
    72553 
    72554 , medium aquamarine
    72555 
    72556 , medium blue
    72557 
    72558 , medium orchid
    72559 
    72560 , medium purple
    72561 
    72562 , medium sea green
    72563 
    72564 , medium seagreen
    72565 
    72566 , medium slate blue
    72567 
    72568 , medium spring green
    72569 
    72570 , medium turquoise
    72571 
    72572 , medium violet red
    72573 
    72574 , mediumaquamarine
    72575 
    72576 , mediumblue
    72577 
    72578 , mediumorchid
    72579 
    72580 , mediumpurple
    72581 
    72582 , mediumseagreen
    72583 
    72584 , mediumslateblue
    72585 
    72586 , mediumspringgreen
    72587 
    72588 , mediumturquoise
    72589 
    72590 , mediumvioletred
    72591 
    72592 , midnight blue
    72593 
    72594 , midnightblue
    72595 
    72596 , mint cream
    72597 
    72598 , mintcream
    72599 
    72600 , misty rose
    72601 
    72602 , mistyrose
    72603 
    72604 , moccasin
    72605 
    72606 , navajo white
    72607 
    72608 , navajowhite
    72609 
    72610 , navy
    72611 
    72612 , old lace
    72613 
    72614 , oldlace
    72615 
    72616 , olive
    72617 
    72618 , olive drab
    72619 
    72620 , olivedrab
    72621 
    72622 , orange
    72623 
    72624 , orange red
    72625 
    72626 , orangered
    72627 
    72628 , orchid
    72629 
    72630 , pale goldenrod
    72631 
    72632 , pale green
    72633 
    72634 , pale turquoise
    72635 
    72636 , pale violet red
    72637 
    72638 , palegoldenrod
    72639 
    72640 , palegreen
    72641 
    72642 , paleturquoise
    72643 
    72644 , palevioletred
    72645 
    72646 , papaya whip
    72647 
    72648 , papayawhip
    72649 
    72650 , peach puff
    72651 
    72652 , peachpuff
    72653 
    72654 , peru
    72655 
    72656 , pink
    72657 
    72658 , plum
    72659 
    72660 , powder blue
    72661 
    72662 , powderblue
    72663 
    72664 , purple
    72665 
    72666 , rebecca purple
    72667 
    72668 , rebeccapurple
    72669 
    72670 , red
    72671 
    72672 , rosy brown
    72673 
    72674 , rosybrown
    72675 
    72676 , royal blue
    72677 
    72678 , royalblue
    72679 
    72680 , saddle brown
    72681 
    72682 , saddlebrown
    72683 
    72684 , salmon
    72685 
    72686 , sandy brown
    72687 
    72688 , sandybrown
    72689 
    72690 , sea green
    72691 
    72692 , seagreen
    72693 
    72694 , seashell
    72695 
    72696 , sienna
    72697 
    72698 , silver
    72699 
    72700 , sky blue
    72701 
    72702 , skyblue
    72703 
    72704 , slate blue
    72705 
    72706 , slate gray
    72707 
    72708 , slate grey
    72709 
    72710 , slateblue
    72711 
    72712 , slategray
    72713 
    72714 , slategrey
    72715 
    72716 , snow
    72717 
    72718 , spring green
    72719 
    72720 , springgreen
    72721 
    72722 , steel blue
    72723 
    72724 , steelblue
    72725 
    72726 , tan
    72727 
    72728 , teal
    72729 
    72730 , thistle
    72731 
    72732 , tomato
    72733 
    72734 , transparent
    72735 
    72736 , turquoise
    72737 
    72738 , violet
    72739 
    72740 , wheat
    72741 
    72742 , white
    72743 
    72744 , white smoke
    72745 
    72746 , whitesmoke
    72747 
    72748 , yellow
    72749 
    72750 , yellow green
    72751 
    72752 , and yellowgreen
    72753 
    72754 . 
    72755 
    72756 > show #!54 models
    72757 
    72758 > select add #54
    72759 
    72760 229 atoms, 228 bonds, 31 residues, 1 model selected 
    72761 
    72762 > select subtract #54
    72763 
    72764 Nothing selected 
    72765 
    72766 > show #55 models
    72767 
    72768 > hide #55 models
    72769 
    72770 > hide #!54 models
    72771 
    72772 > select #61/A
    72773 
    72774 229 atoms, 228 bonds, 31 residues, 1 model selected 
    72775 
    72776 > color sel label_purple
    72777 
    72778 > select #61/B
    72779 
    72780 1350 atoms, 1373 bonds, 167 residues, 1 model selected 
    72781 
    72782 > color sel arf1v2
    72783 
    72784 > select #61/C
    72785 
    72786 1350 atoms, 1373 bonds, 167 residues, 1 model selected 
    72787 
    72788 > color sel arf1v2
    72789 
    72790 > select #61/C
    72791 
    72792 1350 atoms, 1373 bonds, 167 residues, 1 model selected 
    72793 
    72794 > select #61/D
    72795 
    72796 4763 atoms, 4880 bonds, 591 residues, 1 model selected 
    72797 
    72798 > color sel alphav2
    72799 
    72800 > select #61/E
    72801 
    72802 1856 atoms, 1891 bonds, 233 residues, 1 model selected 
    72803 
    72804 > color sel alphav2
    72805 
    72806 > select #61/E
    72807 
    72808 1856 atoms, 1891 bonds, 233 residues, 1 model selected 
    72809 
    72810 > select #61/G
    72811 
    72812 2009 atoms, 2048 bonds, 252 residues, 1 model selected 
    72813 
    72814 > color sel betapv2
    72815 
    72816 > select #61/H
    72817 
    72818 1872 atoms, 1904 bonds, 243 residues, 1 model selected 
    72819 
    72820 > color sel betav2
    72821 
    72822 > select #61/G
    72823 
    72824 2009 atoms, 2048 bonds, 252 residues, 1 model selected 
    72825 
    72826 > color sel betapv2
    72827 
    72828 > select #61/F
    72829 
    72830 4686 atoms, 4798 bonds, 586 residues, 1 model selected 
    72831 
    72832 > color sel betapv2
    72833 
    72834 > select #61/H
    72835 
    72836 1872 atoms, 1904 bonds, 243 residues, 1 model selected 
    72837 
    72838 > color sel betav2
    72839 
    72840 > select #61/I
    72841 
    72842 2488 atoms, 2518 bonds, 1 pseudobond, 313 residues, 2 models selected 
    72843 
    72844 > color sel betav2
    72845 
    72846 > select #61/J
    72847 
    72848 2879 atoms, 2928 bonds, 1 pseudobond, 362 residues, 2 models selected 
    72849 
    72850 > color sel betav2
    72851 
    72852 > select #61/K
    72853 
    72854 1626 atoms, 1645 bonds, 1 pseudobond, 201 residues, 2 models selected 
    72855 
    72856 > color sel deltav2
    72857 
    72858 > select #61/L
    72859 
    72860 1163 atoms, 1177 bonds, 149 residues, 1 model selected 
    72861 
    72862 > color sel gammav3
    72863 
    72864 > select #61/M
    72865 
    72866 2333 atoms, 2372 bonds, 299 residues, 1 model selected 
    72867 
    72868 > color sel gammav3
    72869 
    72870 > select #61/M
    72871 
    72872 2333 atoms, 2372 bonds, 299 residues, 1 model selected 
    72873 
    72874 > color sel gammav3
    72875 
    72876 > select #61/N
    72877 
    72878 1064 atoms, 1080 bonds, 1 pseudobond, 135 residues, 2 models selected 
    72879 
    72880 > color sel gammav3
    72881 
    72882 > select #61/O
    72883 
    72884 1200 atoms, 1218 bonds, 150 residues, 1 model selected 
    72885 
    72886 > color sel zetav2
    72887 
    72888 > select #61/O
    72889 
    72890 1200 atoms, 1218 bonds, 150 residues, 1 model selected 
    72891 
    72892 > select #61/P
    72893 
    72894 1350 atoms, 1373 bonds, 167 residues, 1 model selected 
    72895 
    72896 > color sel arf1v2
    72897 
    72898 > select #61/Q
    72899 
    72900 1971 atoms, 2002 bonds, 244 residues, 1 model selected 
    72901 
    72902 > color sel label_purple
    72903 
    72904 > select add #61
    72905 
    72906 34189 atoms, 34808 bonds, 4 pseudobonds, 4290 residues, 2 models selected 
    72907 
    72908 > select subtract #61
    72909 
    72910 Nothing selected 
    72911 
    72912 > show #!63 models
    72913 
    72914 > hide #!1 models
    72915 
    72916 > hide #!61 models
    72917 
    72918 > volume #63 level 0.005298
    72919 
    72920 [Repeated 1 time(s)]
    72921 
    72922 > volume #1 level 0.004804
    72923 
    72924 > volume #1 level 0.005
    72925 
    72926 > lighting simple
    72927 
    72928 > lighting soft
    72929 
    72930 > lighting full
    72931 
    72932 > lighting soft
    72933 
    72934 > lighting simple
    72935 
    72936 > graphics silhouettes false
    72937 
    72938 > graphics silhouettes true
    72939 
    72940 > lighting shadows true
    72941 
    72942 > lighting soft
    72943 
    72944 > graphics silhouettes false
    72945 
    72946 > lighting simple
    72947 
    72948 > graphics silhouettes true
    72949 
    72950 > lighting full
    72951 
    72952 > lighting simple
    72953 
    72954 > show #!61 models
    72955 
    72956 > volume #1 level 0.005
    72957 
    72958 > save /Users/becca/Desktop/image1.png supersample 3
    72959 
    72960 > open
    72961 > /Users/becca/Desktop/Postdoc/Icknield_workshop/My_processing/COPI_Golph/Model/Flexfit_tempy_ref_copi_golph_AF3_aligned/flex_fit_out/final.pdb
    72962 
    72963 Chain information for final.pdb #2 
    72964 --- 
    72965 Chain | Description 
    72966 A | No description available 
    72967 B C | No description available 
    72968 D | No description available 
    72969 E | No description available 
    72970 F | No description available 
    72971 G | No description available 
    72972 H | No description available 
    72973 I | No description available 
    72974  
    72975 
    72976 > hide #2#!61 atoms
    72977 
    72978 > show #2#!61 cartoons
    72979 
    72980 > show #!63 models
    72981 
    72982 > hide #!63 models
    72983 
    72984 > select add #2
    72985 
    72986 35468 atoms, 36117 bonds, 4477 residues, 1 model selected 
    72987 
    72988 > select subtract #2
    72989 
    72990 Nothing selected 
    72991 
    72992 > hide #2 models
    72993 
    72994 > save /Users/becca/Desktop/image2.png supersample 3
    72995 
    72996 > save /Users/becca/Desktop/image3.png supersample 3
    72997 
    72998 > volume #1 level 0.008439
    72999 
    73000 > volume #1 level 0.008
    73001 
    73002 > save /Users/becca/Desktop/image4.png supersample 3
    73003 
    73004 > save /Users/becca/Desktop/image5.png supersample 3
    73005 
    73006 > save /Users/becca/Desktop/image6.png supersample 3
    73007 
    73008 > volume #1 level 0.008
    73009 
    73010 > rename #2 CopI_Golph_AF3_TEMPyReff_FF.pdb
    73011 
    73012 > select add #2
    73013 
    73014 35468 atoms, 36117 bonds, 4477 residues, 1 model selected 
    73015 
    73016 > show #2 models
    73017 
    73018 > ui mousemode right "translate selected models"
    73019 
    73020 > view matrix models #2,1,0,0,-31.19,0,1,0,49.912,0,0,1,-16.182
    73021 
    73022 > ui mousemode right "rotate selected models"
    73023 
    73024 > view matrix models
    73025 > #2,0.86751,-0.49534,0.045513,112.21,0.48448,0.86212,0.1484,-68.876,-0.11275,-0.10669,0.98788,40.337
    73026 
    73027 > view matrix models
    73028 > #2,0.35175,-0.74534,-0.56634,453.85,0.28095,0.66117,-0.69564,245.76,0.89294,0.085576,0.44197,-106.93
    73029 
    73030 > view matrix models
    73031 > #2,0.35414,-0.41531,-0.83791,440.5,0.025342,0.89991,-0.43533,180.32,0.93485,0.13294,0.32922,-99.832
    73032 
    73033 > view matrix models
    73034 > #2,0.071998,0.33036,-0.94111,348.01,-0.37176,0.88445,0.28203,94.9,0.92553,0.32956,0.18649,-110.12
    73035 
    73036 > view matrix models
    73037 > #2,0.35685,-0.71818,-0.59739,453.82,0.25685,0.69027,-0.67643,239.31,0.89816,0.087945,0.43079,-105.89
    73038 
    73039 > view matrix models
    73040 > #2,0.0056735,-0.99781,-0.065887,470.96,0.78232,0.045468,-0.62121,261.08,0.62285,-0.04802,0.78087,-96.169
    73041 
    73042 > view matrix models
    73043 > #2,0.37415,-0.55777,-0.74088,446.43,0.04545,0.80897,-0.58608,236.83,0.92625,0.18561,0.32803,-110.62
    73044 
    73045 > view matrix models
    73046 > #2,0.035147,0.12676,-0.99131,420.41,-0.65475,0.75232,0.072984,248.66,0.75503,0.64649,0.10944,-128.9
    73047 
    73048 > view matrix models
    73049 > #2,-0.037528,0.19288,-0.9805,418.43,-0.70286,0.69238,0.1631,251.98,0.71034,0.69528,0.10959,-130.48
    73050 
    73051 > view matrix models
    73052 > #2,-0.068173,0.21783,-0.9736,417.72,-0.71944,0.66536,0.19924,253.4,0.6912,0.71403,0.11136,-131.07
    73053 
    73054 > view matrix models
    73055 > #2,-0.07803,0.22552,-0.97111,417.51,-0.72434,0.65647,0.21065,253.86,0.68501,0.71985,0.11213,-131.24
    73056 
    73057 > ui mousemode right "translate selected models"
    73058 
    73059 > view matrix models
    73060 > #2,-0.07803,0.22552,-0.97111,605.87,-0.72434,0.65647,0.21065,289.74,0.68501,0.71985,0.11213,-8.4516
    73061 
    73062 > view matrix models
    73063 > #2,-0.07803,0.22552,-0.97111,534.39,-0.72434,0.65647,0.21065,325.87,0.68501,0.71985,0.11213,2.9277
    73064 
    73065 > view matrix models
    73066 > #2,-0.07803,0.22552,-0.97111,604.94,-0.72434,0.65647,0.21065,292.49,0.68501,0.71985,0.11213,24.568
    73067 
    73068 > ui mousemode right "rotate selected models"
    73069 
    73070 > view matrix models
    73071 > #2,0.97374,0.14663,0.17415,81.319,-0.18321,0.95879,0.21713,86.78,-0.13513,-0.24334,0.96048,242.57
    73072 
    73073 > ui mousemode right "translate selected models"
    73074 
    73075 > view matrix models
    73076 > #2,0.97374,0.14663,0.17415,29.188,-0.18321,0.95879,0.21713,88.592,-0.13513,-0.24334,0.96048,259.92
    73077 
    73078 > view matrix models
    73079 > #2,0.97374,0.14663,0.17415,-20.202,-0.18321,0.95879,0.21713,71.59,-0.13513,-0.24334,0.96048,178.44
    73080 
    73081 > ui tool show "Fit in Map"
    73082 
    73083 The cached device pixel ratio value was stale on window expose. Please file a
    73084 QTBUG which explains how to reproduce. 
    73085 
    73086 > fitmap #2 inMap #1
    73087 
    73088 Fit molecule CopI_Golph_AF3_TEMPyReff_FF.pdb (#2) to map
    73089 relion_locres_filtered_20240326_GT.mrc (#1) using 35468 atoms 
    73090 average map value = 0.01005, steps = 128 
    73091 shifted from previous position = 6.59 
    73092 rotated from previous position = 19.5 degrees 
    73093 atoms outside contour = 17045, contour level = 0.008 
    73094  
    73095 Position of CopI_Golph_AF3_TEMPyReff_FF.pdb (#2) relative to
    73096 relion_locres_filtered_20240326_GT.mrc (#1) coordinates: 
    73097 Matrix rotation and translation 
    73098 0.99999995 -0.00024332 0.00013426 0.03612248 
    73099 0.00024337 0.99999990 -0.00033935 0.03885805 
    73100 -0.00013417 0.00033938 0.99999992 -0.12979950 
    73101 Axis 0.77368602 0.30599038 0.55477908 
    73102 Axis point 0.00000000 329.89751172 143.43354143 
    73103 Rotation angle (degrees) 0.02513175 
    73104 Shift along axis -0.03217240 
    73105  
    73106 
    73107 > select subtract #2
    73108 
    73109 Nothing selected 
    73110 
    73111 > hide #!61 models
    73112 
    73113 > color #2/A alphav2
    73114 
    73115 > color #2/A label_purple
    73116 
    73117 > color #2/b Arf1
    73118 
    73119 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
    73120 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
    73121 'fromcartoons', 'fromribbons', or 'random' or a keyword 
    73122 
    73123 > color #2/b arf1v2
    73124 
    73125 > color #2/c arf1v2
    73126 
    73127 > color #2/d alphav2
    73128 
    73129 > color #2/e betapv2
    73130 
    73131 > color #2/e betav2
    73132 
    73133 > color #2/f betapv2
    73134 
    73135 > color #2/g deltav2
    73136 
    73137 > color #2/f gammav3
    73138 
    73139 > color #2/g zetav2
    73140 
    73141 > color #2/g deltav2
    73142 
    73143 > color #2/h red
    73144 
    73145 > color #2/h gammav3
    73146 
    73147 > color #2/i gammav3
    73148 
    73149 > color #2/i zetav2
    73150 
    73151 > color #2/j zetav2
    73152 
    73153 > color #2/f betapv2\
    73154 
    73155 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
    73156 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
    73157 'fromcartoons', 'fromribbons', or 'random' or a keyword 
    73158 
    73159 > color #2/f betapv2
    73160 
    73161 > hide #2 models
    73162 
    73163 > show #2 models
    73164 
    73165 > hide #2 models
    73166 
    73167 > show #2 models
    73168 
    73169 > hide #2 models
    73170 
    73171 > show #2 models
    73172 
    73173 > hide #2 models
    73174 
    73175 > show #!61 models
    73176 
    73177 > show #2 models
    73178 
    73179 > hide #2 models
    73180 
    73181 > show #2 models
    73182 
    73183 > hide #2 models
    73184 
    73185 > show #2 models
    73186 
    73187 > hide #!61 models
    73188 
    73189 > show #!61 models
    73190 
    73191 > hide #!61 models
    73192 
    73193 > show #!61 models
    73194 
    73195 > hide #2 models
    73196 
    73197 > close #2
    73198 
    73199 > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3
    73200 > paper/Figures/2024_Nov/20241113_for_figures.cxs"
    73201 
    73202 > volume #1 level 0.005
    73203 
    73204 > volume #1 level 0.006
    73205 
    73206 > volume #1 level 0.0055
    73207 
    73208 > save /Users/becca/Desktop/image1.png supersample 3
    73209 
    73210 [Repeated 1 time(s)]
    73211 
    73212 > save /Users/becca/Desktop/image2.png supersample 3
    73213 
    73214 > volume #1 level 0.008
    73215 
    73216 > save /Users/becca/Desktop/image1.png supersample 3
    73217 
    73218 > volume #1 level 0.005298
    73219 
    73220 > volume #1 level 0.0055
    73221 
    73222 > save /Users/becca/Desktop/image2.png supersample 3
    73223 
    73224 > volume #1 level 0.008
    73225 
    73226 > save /Users/becca/Desktop/image3.png supersample 3
    73227 
    73228 > volume #1 level 0.005
    73229 
    73230 > save /Users/becca/Desktop/image4.png supersample 3
    73231 
    73232 > volume #1 level 0.008
    73233 
    73234 > save /Users/becca/Desktop/image5.png supersample 3
    73235 
    73236 > volume #1 level 0.005
    73237 
    73238 > save /Users/becca/Desktop/image6.png supersample 3
    73239 
    73240 > volume #1 level 0.008
    73241 
    73242 > save /Users/becca/Desktop/image7.png supersample 3
    73243 
    73244 > volume #1 level 0.005
    73245 
    73246 > save /Users/becca/Desktop/image1.png supersample 3
    73247 
    73248 > volume #1 level 0.008
    73249 
    73250 > save /Users/becca/Desktop/image1.png supersample 3
    73251 
    73252 [Repeated 2 time(s)]
    73253 
    73254 > lighting simple
    73255 
    73256 > lighting soft
    73257 
    73258 > lighting full
    73259 
    73260 > lighting simple
    73261 
    73262 > save /Users/becca/Desktop/image1.png supersample 3
    73263 
    73264 > volume #1 level 0.005
    73265 
    73266 > preset "overall look" "publication 1 (silhouettes)"
    73267 
    73268 Using preset: Overall Look / Publication 1 (Silhouettes) 
    73269 Preset expands to these ChimeraX commands:
    73270 
    73271    
    73272    
    73273     set bg white
    73274     graphics silhouettes t
    73275     lighting depthCue f
    73276 
    73277  
    73278 
    73279 > preset "overall look" "publication 2 (depth-cued)"
    73280 
    73281 Using preset: Overall Look / Publication 2 (Depth-Cued) 
    73282 Preset expands to these ChimeraX commands:
    73283 
    73284    
    73285    
    73286     set bg white
    73287     graphics silhouettes f
    73288     lighting depthCue t
    73289 
    73290  
    73291 
    73292 > preset "overall look" "publication 1 (silhouettes)"
    73293 
    73294 Using preset: Overall Look / Publication 1 (Silhouettes) 
    73295 Preset expands to these ChimeraX commands:
    73296 
    73297    
    73298    
    73299     set bg white
    73300     graphics silhouettes t
    73301     lighting depthCue f
    73302 
    73303  
    73304 
    73305 > scene 1
    73306 
    73307 Unknown command: scene 1 
    73308 
    73309 > view 1
    73310 
    73311 Expected an objects specifier or a view name or a keyword 
    73312 
    73313 > view view1
    73314 
    73315 Expected an objects specifier or a view name or a keyword 
    73316 
    73317 > view save view1
    73318 
    73319 Expected an objects specifier or a view name or a keyword 
    73320 
    73321 > view name view1
    73322 
    73323 > volume #1 level 0.008
    73324 
    73325 > view name view2
    73326 
    73327 > view name view3
    73328 
    73329 > view name view4
    73330 
    73331 > view name view5
    73332 
    73333 > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3
    73334 > paper/Figures/2024_Nov/20241114.cxs"
    73335 
    73336 > view view1
    73337 
    73338 > view view2
    73339 
    73340 > view view1
    73341 
    73342 > volume #1 level 0.005
    73343 
    73344 > cd "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3
    73345 > paper/Figures/2024_Nov"
    73346 
    73347 Current working directory is: /Users/becca/Desktop/Postdoc/Grants and paper
    73348 drafts/Golph3 paper/Figures/2024_Nov 
    73349 
    73350 > save overview_w_membrane.png supersample 3 transparentBackground true
    73351 
    73352 > volume #1 level 0.008
    73353 
    73354 > save overview_wout_membrane.png supersample 3 transparentBackground true
    73355 
    73356 > view view1
    73357 
    73358 > view view2
    73359 
    73360 > view view3
    73361 
    73362 > ui mousemode right select
    73363 
    73364 > select clear
    73365 
    73366 > select #61/M:11
    73367 
    73368 9 atoms, 8 bonds, 1 residue, 1 model selected 
    73369 Drag select of 2 residues 
    73370 Drag select of 6 residues 
    73371 
    73372 > select up
    73373 
    73374 180 atoms, 182 bonds, 23 residues, 1 model selected 
    73375 
    73376 > select down
    73377 
    73378 55 atoms, 6 residues, 1 model selected 
    73379 
    73380 > delete sel
    73381 
    73382 Drag select of 2 residues 
    73383 
    73384 > select clear
    73385 
    73386 Drag select of 2 residues 
    73387 
    73388 > delete sel
    73389 
    73390 > select clear
    73391 
    73392 > select #61/M:9
    73393 
    73394 8 atoms, 7 bonds, 1 residue, 1 model selected 
    73395 
    73396 > delete sel
    73397 
    73398 > select #61/M:10
    73399 
    73400 9 atoms, 8 bonds, 1 residue, 1 model selected 
    73401 
    73402 > delete sel
    73403 
    73404 > select #61/M:11
    73405 
    73406 9 atoms, 8 bonds, 1 residue, 1 model selected 
    73407 
    73408 > delete sel
    73409 
    73410 > select #61/M:12
    73411 
    73412 6 atoms, 5 bonds, 1 residue, 1 model selected 
    73413 
    73414 > delete sel
    73415 
    73416 > select #61/M:13
    73417 
    73418 4 atoms, 3 bonds, 1 residue, 1 model selected 
    73419 
    73420 > delete sel
    73421 
    73422 > select #61/M:14
    73423 
    73424 4 atoms, 3 bonds, 1 residue, 1 model selected 
    73425 
    73426 > delete sel
    73427 
    73428 > select clear
    73429 
    73430 > select #61/M:15
    73431 
    73432 4 atoms, 3 bonds, 1 residue, 1 model selected 
    73433 
    73434 > delete sel
    73435 
    73436 > select #61/M:16
    73437 
    73438 6 atoms, 5 bonds, 1 residue, 1 model selected 
    73439 
    73440 > delete sel
    73441 
    73442 > view 3
    73443 
    73444 Expected an objects specifier or a view name or a keyword 
    73445 
    73446 > view view3
    73447 
    73448 > select clear
    73449 
    73450 > ui mousemode right select
    73451 
    73452 > ui mousemode right "translate selected models"
    73453 
    73454 > save zoomed_view_no_bkgd.png supersample 3 transparentBackground true
    73455 
    73456 > view view4
    73457 
    73458 > save zoomed_view_with_bkgd.png supersample 3 transparentBackground true
    73459 
    73460 > view view5
    73461 
    73462 > view view4
    73463 
    73464 > view view5
    73465 
    73466 > save zoomed_view_with_full_bkgd.png supersample 3 transparentBackground true
    73467 
    73468 > view view2
    73469 
    73470 > save overview_wout_membrane_v2.png supersample 3 transparentBackground true
    73471 
    73472 > color list
    73473 
    73474 19 custom colors: alphav1
    73475 
    73476 , alphav2
    73477 
    73478 , arf1v1
    73479 
    73480 , arf1v2
    73481 
    73482 , betapv1
    73483 
    73484 , betapv2
    73485 
    73486 , betav1
    73487 
    73488 , betav2
    73489 
    73490 , deltav1
    73491 
    73492 , deltav2
    73493 
    73494 , epsilonv1
    73495 
    73496 , gammav1
    73497 
    73498 , gammav2
    73499 
    73500 , gammav3
    73501 
    73502 , label_purple
    73503 
    73504 , label_purplev2
    73505 
    73506 , label_red
    73507 
    73508 , zetav1
    73509 
    73510 , and zetav2
    73511 
    73512 . 
    73513 248 builtin colors: alice blue
    73514 
    73515 , aliceblue
    73516 
    73517 , antique white
    73518 
    73519 , antiquewhite
    73520 
    73521 , aqua
    73522 
    73523 , aquamarine
    73524 
    73525 , azure
    73526 
    73527 , beige
    73528 
    73529 , bisque
    73530 
    73531 , black
    73532 
    73533 , blanched almond
    73534 
    73535 , blanchedalmond
    73536 
    73537 , blue
    73538 
    73539 , blue violet
    73540 
    73541 , blueviolet
    73542 
    73543 , brown
    73544 
    73545 , burly wood
    73546 
    73547 , burlywood
    73548 
    73549 , cadet blue
    73550 
    73551 , cadetblue
    73552 
    73553 , chartreuse
    73554 
    73555 , chocolate
    73556 
    73557 , coral
    73558 
    73559 , cornflower blue
    73560 
    73561 , cornflowerblue
    73562 
    73563 , cornsilk
    73564 
    73565 , crimson
    73566 
    73567 , cyan
    73568 
    73569 , dark blue
    73570 
    73571 , dark cyan
    73572 
    73573 , dark goldenrod
    73574 
    73575 , dark gray
    73576 
    73577 , dark green
    73578 
    73579 , dark grey
    73580 
    73581 , dark khaki
    73582 
    73583 , dark magenta
    73584 
    73585 , dark olive green
    73586 
    73587 , dark orange
    73588 
    73589 , dark orchid
    73590 
    73591 , dark red
    73592 
    73593 , dark salmon
    73594 
    73595 , dark sea green
    73596 
    73597 , dark seagreen
    73598 
    73599 , dark slate blue
    73600 
    73601 , dark slate gray
    73602 
    73603 , dark slate grey
    73604 
    73605 , dark turquoise
    73606 
    73607 , dark violet
    73608 
    73609 , darkblue
    73610 
    73611 , darkcyan
    73612 
    73613 , darkgoldenrod
    73614 
    73615 , darkgray
    73616 
    73617 , darkgreen
    73618 
    73619 , darkgrey
    73620 
    73621 , darkkhaki
    73622 
    73623 , darkmagenta
    73624 
    73625 , darkolivegreen
    73626 
    73627 , darkorange
    73628 
    73629 , darkorchid
    73630 
    73631 , darkred
    73632 
    73633 , darksalmon
    73634 
    73635 , darkseagreen
    73636 
    73637 , darkslateblue
    73638 
    73639 , darkslategray
    73640 
    73641 , darkslategrey
    73642 
    73643 , darkturquoise
    73644 
    73645 , darkviolet
    73646 
    73647 , deep pink
    73648 
    73649 , deep sky blue
    73650 
    73651 , deep skyblue
    73652 
    73653 , deeppink
    73654 
    73655 , deepskyblue
    73656 
    73657 , dim gray
    73658 
    73659 , dim grey
    73660 
    73661 , dimgray
    73662 
    73663 , dimgrey
    73664 
    73665 , dodger blue
    73666 
    73667 , dodgerblue
    73668 
    73669 , fire brick
    73670 
    73671 , firebrick
    73672 
    73673 , floral white
    73674 
    73675 , floralwhite
    73676 
    73677 , forest green
    73678 
    73679 , forestgreen
    73680 
    73681 , fuchsia
    73682 
    73683 , gainsboro
    73684 
    73685 , ghost white
    73686 
    73687 , ghostwhite
    73688 
    73689 , gold
    73690 
    73691 , goldenrod
    73692 
    73693 , gray
    73694 
    73695 , green
    73696 
    73697 , green yellow
    73698 
    73699 , greenyellow
    73700 
    73701 , grey
    73702 
    73703 , honeydew
    73704 
    73705 , hot pink
    73706 
    73707 , hotpink
    73708 
    73709 , indian red
    73710 
    73711 , indianred
    73712 
    73713 , indigo
    73714 
    73715 , ivory
    73716 
    73717 , khaki
    73718 
    73719 , lavender
    73720 
    73721 , lavender blush
    73722 
    73723 , lavenderblush
    73724 
    73725 , lawn green
    73726 
    73727 , lawngreen
    73728 
    73729 , lemon chiffon
    73730 
    73731 , lemonchiffon
    73732 
    73733 , light blue
    73734 
    73735 , light coral
    73736 
    73737 , light cyan
    73738 
    73739 , light goldenrod yellow
    73740 
    73741 , light gray
    73742 
    73743 , light green
    73744 
    73745 , light grey
    73746 
    73747 , light pink
    73748 
    73749 , light salmon
    73750 
    73751 , light sea green
    73752 
    73753 , light seagreen
    73754 
    73755 , light sky blue
    73756 
    73757 , light skyblue
    73758 
    73759 , light slate gray
    73760 
    73761 , light slate grey
    73762 
    73763 , light steel blue
    73764 
    73765 , light yellow
    73766 
    73767 , lightblue
    73768 
    73769 , lightcoral
    73770 
    73771 , lightcyan
    73772 
    73773 , lightgoldenrodyellow
    73774 
    73775 , lightgray
    73776 
    73777 , lightgreen
    73778 
    73779 , lightgrey
    73780 
    73781 , lightpink
    73782 
    73783 , lightsalmon
    73784 
    73785 , lightseagreen
    73786 
    73787 , lightskyblue
    73788 
    73789 , lightslategray
    73790 
    73791 , lightslategrey
    73792 
    73793 , lightsteelblue
    73794 
    73795 , lightyellow
    73796 
    73797 , lime
    73798 
    73799 , lime green
    73800 
    73801 , limegreen
    73802 
    73803 , linen
    73804 
    73805 , magenta
    73806 
    73807 , maroon
    73808 
    73809 , medium aquamarine
    73810 
    73811 , medium blue
    73812 
    73813 , medium orchid
    73814 
    73815 , medium purple
    73816 
    73817 , medium sea green
    73818 
    73819 , medium seagreen
    73820 
    73821 , medium slate blue
    73822 
    73823 , medium spring green
    73824 
    73825 , medium turquoise
    73826 
    73827 , medium violet red
    73828 
    73829 , mediumaquamarine
    73830 
    73831 , mediumblue
    73832 
    73833 , mediumorchid
    73834 
    73835 , mediumpurple
    73836 
    73837 , mediumseagreen
    73838 
    73839 , mediumslateblue
    73840 
    73841 , mediumspringgreen
    73842 
    73843 , mediumturquoise
    73844 
    73845 , mediumvioletred
    73846 
    73847 , midnight blue
    73848 
    73849 , midnightblue
    73850 
    73851 , mint cream
    73852 
    73853 , mintcream
    73854 
    73855 , misty rose
    73856 
    73857 , mistyrose
    73858 
    73859 , moccasin
    73860 
    73861 , navajo white
    73862 
    73863 , navajowhite
    73864 
    73865 , navy
    73866 
    73867 , old lace
    73868 
    73869 , oldlace
    73870 
    73871 , olive
    73872 
    73873 , olive drab
    73874 
    73875 , olivedrab
    73876 
    73877 , orange
    73878 
    73879 , orange red
    73880 
    73881 , orangered
    73882 
    73883 , orchid
    73884 
    73885 , pale goldenrod
    73886 
    73887 , pale green
    73888 
    73889 , pale turquoise
    73890 
    73891 , pale violet red
    73892 
    73893 , palegoldenrod
    73894 
    73895 , palegreen
    73896 
    73897 , paleturquoise
    73898 
    73899 , palevioletred
    73900 
    73901 , papaya whip
    73902 
    73903 , papayawhip
    73904 
    73905 , peach puff
    73906 
    73907 , peachpuff
    73908 
    73909 , peru
    73910 
    73911 , pink
    73912 
    73913 , plum
    73914 
    73915 , powder blue
    73916 
    73917 , powderblue
    73918 
    73919 , purple
    73920 
    73921 , rebecca purple
    73922 
    73923 , rebeccapurple
    73924 
    73925 , red
    73926 
    73927 , rosy brown
    73928 
    73929 , rosybrown
    73930 
    73931 , royal blue
    73932 
    73933 , royalblue
    73934 
    73935 , saddle brown
    73936 
    73937 , saddlebrown
    73938 
    73939 , salmon
    73940 
    73941 , sandy brown
    73942 
    73943 , sandybrown
    73944 
    73945 , sea green
    73946 
    73947 , seagreen
    73948 
    73949 , seashell
    73950 
    73951 , sienna
    73952 
    73953 , silver
    73954 
    73955 , sky blue
    73956 
    73957 , skyblue
    73958 
    73959 , slate blue
    73960 
    73961 , slate gray
    73962 
    73963 , slate grey
    73964 
    73965 , slateblue
    73966 
    73967 , slategray
    73968 
    73969 , slategrey
    73970 
    73971 , snow
    73972 
    73973 , spring green
    73974 
    73975 , springgreen
    73976 
    73977 , steel blue
    73978 
    73979 , steelblue
    73980 
    73981 , tan
    73982 
    73983 , teal
    73984 
    73985 , thistle
    73986 
    73987 , tomato
    73988 
    73989 , transparent
    73990 
    73991 , turquoise
    73992 
    73993 , violet
    73994 
    73995 , wheat
    73996 
    73997 , white
    73998 
    73999 , white smoke
    74000 
    74001 , whitesmoke
    74002 
    74003 , yellow
    74004 
    74005 , yellow green
    74006 
    74007 , and yellowgreen
    74008 
    74009 . 
    74010 
    74011 > save "/Users/becca/Desktop/Postdoc/Grants and paper drafts/Golph3
    74012 > paper/Figures/2024_Nov/20241114_v2.cxs"
    74013 
    74014 ——— End of log from Thu Nov 14 15:28:36 2024 ———
    74015 
    74016 opened ChimeraX session 
    74017 
    74018 > select add #38
    74019 
    74020 4763 atoms, 4880 bonds, 591 residues, 1 model selected 
    74021 
    74022 > show #38 models
    74023 
    74024 > hide #!1 models
    74025 
    74026 > hide #!61 models
    74027 
    74028 > color sel alphav3
    74029 
    74030 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
    74031 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
    74032 'fromcartoons', 'fromribbons', or 'random' or a keyword 
    74033 
    74034 > color alphav3 sel
    74035 
    74036 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
    74037 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
    74038 'fromcartoons', 'fromribbons', or 'random' or a keyword 
    74039 
    74040 > color list
    74041 
    74042 19 custom colors: alphav1
    74043 
    74044 , alphav2
    74045 
    74046 , arf1v1
    74047 
    74048 , arf1v2
    74049 
    74050 , betapv1
    74051 
    74052 , betapv2
    74053 
    74054 , betav1
    74055 
    74056 , betav2
    74057 
    74058 , deltav1
    74059 
    74060 , deltav2
    74061 
    74062 , epsilonv1
    74063 
    74064 , gammav1
    74065 
    74066 , gammav2
    74067 
    74068 , gammav3
    74069 
    74070 , label_purple
    74071 
    74072 , label_purplev2
    74073 
    74074 , label_red
    74075 
    74076 , zetav1
    74077 
    74078 , and zetav2
    74079 
    74080 . 
    74081 248 builtin colors: alice blue
    74082 
    74083 , aliceblue
    74084 
    74085 , antique white
    74086 
    74087 , antiquewhite
    74088 
    74089 , aqua
    74090 
    74091 , aquamarine
    74092 
    74093 , azure
    74094 
    74095 , beige
    74096 
    74097 , bisque
    74098 
    74099 , black
    74100 
    74101 , blanched almond
    74102 
    74103 , blanchedalmond
    74104 
    74105 , blue
    74106 
    74107 , blue violet
    74108 
    74109 , blueviolet
    74110 
    74111 , brown
    74112 
    74113 , burly wood
    74114 
    74115 , burlywood
    74116 
    74117 , cadet blue
    74118 
    74119 , cadetblue
    74120 
    74121 , chartreuse
    74122 
    74123 , chocolate
    74124 
    74125 , coral
    74126 
    74127 , cornflower blue
    74128 
    74129 , cornflowerblue
    74130 
    74131 , cornsilk
    74132 
    74133 , crimson
    74134 
    74135 , cyan
    74136 
    74137 , dark blue
    74138 
    74139 , dark cyan
    74140 
    74141 , dark goldenrod
    74142 
    74143 , dark gray
    74144 
    74145 , dark green
    74146 
    74147 , dark grey
    74148 
    74149 , dark khaki
    74150 
    74151 , dark magenta
    74152 
    74153 , dark olive green
    74154 
    74155 , dark orange
    74156 
    74157 , dark orchid
    74158 
    74159 , dark red
    74160 
    74161 , dark salmon
    74162 
    74163 , dark sea green
    74164 
    74165 , dark seagreen
    74166 
    74167 , dark slate blue
    74168 
    74169 , dark slate gray
    74170 
    74171 , dark slate grey
    74172 
    74173 , dark turquoise
    74174 
    74175 , dark violet
    74176 
    74177 , darkblue
    74178 
    74179 , darkcyan
    74180 
    74181 , darkgoldenrod
    74182 
    74183 , darkgray
    74184 
    74185 , darkgreen
    74186 
    74187 , darkgrey
    74188 
    74189 , darkkhaki
    74190 
    74191 , darkmagenta
    74192 
    74193 , darkolivegreen
    74194 
    74195 , darkorange
    74196 
    74197 , darkorchid
    74198 
    74199 , darkred
    74200 
    74201 , darksalmon
    74202 
    74203 , darkseagreen
    74204 
    74205 , darkslateblue
    74206 
    74207 , darkslategray
    74208 
    74209 , darkslategrey
    74210 
    74211 , darkturquoise
    74212 
    74213 , darkviolet
    74214 
    74215 , deep pink
    74216 
    74217 , deep sky blue
    74218 
    74219 , deep skyblue
    74220 
    74221 , deeppink
    74222 
    74223 , deepskyblue
    74224 
    74225 , dim gray
    74226 
    74227 , dim grey
    74228 
    74229 , dimgray
    74230 
    74231 , dimgrey
    74232 
    74233 , dodger blue
    74234 
    74235 , dodgerblue
    74236 
    74237 , fire brick
    74238 
    74239 , firebrick
    74240 
    74241 , floral white
    74242 
    74243 , floralwhite
    74244 
    74245 , forest green
    74246 
    74247 , forestgreen
    74248 
    74249 , fuchsia
    74250 
    74251 , gainsboro
    74252 
    74253 , ghost white
    74254 
    74255 , ghostwhite
    74256 
    74257 , gold
    74258 
    74259 , goldenrod
    74260 
    74261 , gray
    74262 
    74263 , green
    74264 
    74265 , green yellow
    74266 
    74267 , greenyellow
    74268 
    74269 , grey
    74270 
    74271 , honeydew
    74272 
    74273 , hot pink
    74274 
    74275 , hotpink
    74276 
    74277 , indian red
    74278 
    74279 , indianred
    74280 
    74281 , indigo
    74282 
    74283 , ivory
    74284 
    74285 , khaki
    74286 
    74287 , lavender
    74288 
    74289 , lavender blush
    74290 
    74291 , lavenderblush
    74292 
    74293 , lawn green
    74294 
    74295 , lawngreen
    74296 
    74297 , lemon chiffon
    74298 
    74299 , lemonchiffon
    74300 
    74301 , light blue
    74302 
    74303 , light coral
    74304 
    74305 , light cyan
    74306 
    74307 , light goldenrod yellow
    74308 
    74309 , light gray
    74310 
    74311 , light green
    74312 
    74313 , light grey
    74314 
    74315 , light pink
    74316 
    74317 , light salmon
    74318 
    74319 , light sea green
    74320 
    74321 , light seagreen
    74322 
    74323 , light sky blue
    74324 
    74325 , light skyblue
    74326 
    74327 , light slate gray
    74328 
    74329 , light slate grey
    74330 
    74331 , light steel blue
    74332 
    74333 , light yellow
    74334 
    74335 , lightblue
    74336 
    74337 , lightcoral
    74338 
    74339 , lightcyan
    74340 
    74341 , lightgoldenrodyellow
    74342 
    74343 , lightgray
    74344 
    74345 , lightgreen
    74346 
    74347 , lightgrey
    74348 
    74349 , lightpink
    74350 
    74351 , lightsalmon
    74352 
    74353 , lightseagreen
    74354 
    74355 , lightskyblue
    74356 
    74357 , lightslategray
    74358 
    74359 , lightslategrey
    74360 
    74361 , lightsteelblue
    74362 
    74363 , lightyellow
    74364 
    74365 , lime
    74366 
    74367 , lime green
    74368 
    74369 , limegreen
    74370 
    74371 , linen
    74372 
    74373 , magenta
    74374 
    74375 , maroon
    74376 
    74377 , medium aquamarine
    74378 
    74379 , medium blue
    74380 
    74381 , medium orchid
    74382 
    74383 , medium purple
    74384 
    74385 , medium sea green
    74386 
    74387 , medium seagreen
    74388 
    74389 , medium slate blue
    74390 
    74391 , medium spring green
    74392 
    74393 , medium turquoise
    74394 
    74395 , medium violet red
    74396 
    74397 , mediumaquamarine
    74398 
    74399 , mediumblue
    74400 
    74401 , mediumorchid
    74402 
    74403 , mediumpurple
    74404 
    74405 , mediumseagreen
    74406 
    74407 , mediumslateblue
    74408 
    74409 , mediumspringgreen
    74410 
    74411 , mediumturquoise
    74412 
    74413 , mediumvioletred
    74414 
    74415 , midnight blue
    74416 
    74417 , midnightblue
    74418 
    74419 , mint cream
    74420 
    74421 , mintcream
    74422 
    74423 , misty rose
    74424 
    74425 , mistyrose
    74426 
    74427 , moccasin
    74428 
    74429 , navajo white
    74430 
    74431 , navajowhite
    74432 
    74433 , navy
    74434 
    74435 , old lace
    74436 
    74437 , oldlace
    74438 
    74439 , olive
    74440 
    74441 , olive drab
    74442 
    74443 , olivedrab
    74444 
    74445 , orange
    74446 
    74447 , orange red
    74448 
    74449 , orangered
    74450 
    74451 , orchid
    74452 
    74453 , pale goldenrod
    74454 
    74455 , pale green
    74456 
    74457 , pale turquoise
    74458 
    74459 , pale violet red
    74460 
    74461 , palegoldenrod
    74462 
    74463 , palegreen
    74464 
    74465 , paleturquoise
    74466 
    74467 , palevioletred
    74468 
    74469 , papaya whip
    74470 
    74471 , papayawhip
    74472 
    74473 , peach puff
    74474 
    74475 , peachpuff
    74476 
    74477 , peru
    74478 
    74479 , pink
    74480 
    74481 , plum
    74482 
    74483 , powder blue
    74484 
    74485 , powderblue
    74486 
    74487 , purple
    74488 
    74489 , rebecca purple
    74490 
    74491 , rebeccapurple
    74492 
    74493 , red
    74494 
    74495 , rosy brown
    74496 
    74497 , rosybrown
    74498 
    74499 , royal blue
    74500 
    74501 , royalblue
    74502 
    74503 , saddle brown
    74504 
    74505 , saddlebrown
    74506 
    74507 , salmon
    74508 
    74509 , sandy brown
    74510 
    74511 , sandybrown
    74512 
    74513 , sea green
    74514 
    74515 , seagreen
    74516 
    74517 , seashell
    74518 
    74519 , sienna
    74520 
    74521 , silver
    74522 
    74523 , sky blue
    74524 
    74525 , skyblue
    74526 
    74527 , slate blue
    74528 
    74529 , slate gray
    74530 
    74531 , slate grey
    74532 
    74533 , slateblue
    74534 
    74535 , slategray
    74536 
    74537 , slategrey
    74538 
    74539 , snow
    74540 
    74541 , spring green
    74542 
    74543 , springgreen
    74544 
    74545 , steel blue
    74546 
    74547 , steelblue
    74548 
    74549 , tan
    74550 
    74551 , teal
    74552 
    74553 , thistle
    74554 
    74555 , tomato
    74556 
    74557 , transparent
    74558 
    74559 , turquoise
    74560 
    74561 , violet
    74562 
    74563 , wheat
    74564 
    74565 , white
    74566 
    74567 , white smoke
    74568 
    74569 , whitesmoke
    74570 
    74571 , yellow
    74572 
    74573 , yellow green
    74574 
    74575 , and yellowgreen
    74576 
    74577 . 
    74578 
    74579 > color name alphav3 #57679E
    74580 
    74581 Color 'alphav3' is opaque: rgb(34.1%, 40.4%, 62%) hex: #57679e
    74582 
    74583  
    74584 
    74585 > color name betapv3 #7ACADA
    74586 
    74587 Color 'betapv3' is opaque: rgb(47.8%, 79.2%, 85.5%) hex: #7acada
    74588 
    74589  
    74590 
    74591 > color name betav3 #447A57
    74592 
    74593 Color 'betav3' is opaque: rgb(26.7%, 47.8%, 34.1%) hex: #447a57
    74594 
    74595  
    74596 
    74597 > color name gammav3 #ADE57C
    74598 
    74599 Color 'gammav3' is opaque: rgb(67.8%, 89.8%, 48.6%) hex: #ade57c
    74600 
    74601  
    74602 
    74603 > color name deltav3 #E5AF76
    74604 
    74605 Color 'deltav3' is opaque: rgb(89.8%, 68.6%, 46.3%) hex: #e5af76
    74606 
    74607  
    74608 
    74609 > color name epsilonv3 #EB8675
    74610 
    74611 Color 'epsilonv3' is opaque: rgb(92.2%, 52.5%, 45.9%) hex: #eb8675
    74612 
    74613  
    74614 
    74615 > color name zetav3 #F0E07B
    74616 
    74617 Color 'zetav3' is opaque: rgb(94.1%, 87.8%, 48.2%) hex: #f0e07b
    74618 
    74619  
    74620 
    74621 > color name arf1v3 #EB8BCA
    74622 
    74623 Color 'arf1v3' is opaque: rgb(92.2%, 54.5%, 79.2%) hex: #eb8bca
    74624 
    74625  
    74626 
    74627 > color name label_red_v3 #E51A16
    74628 
    74629 Color 'label_red_v3' is opaque: rgb(89.8%, 10.2%, 8.63%) hex: #e51a16
    74630 
    74631  
    74632 
    74633 > color name label_purple_v3 #691099
    74634 
    74635 Color 'label_purple_v3' is opaque: rgb(41.2%, 6.27%, 60%) hex: #691099
    74636 
    74637  
    74638 
    74639 > color name lable_purple_v4 #9057AD
    74640 
    74641 Color 'lable_purple_v4' is opaque: rgb(56.5%, 34.1%, 67.8%) hex: #9057ad
    74642 
    74643  
    74644 
    74645 > color name label_purple_v4 #9057AD
    74646 
    74647 Color 'label_purple_v4' is opaque: rgb(56.5%, 34.1%, 67.8%) hex: #9057ad
    74648 
    74649  
    74650 
    74651 > color sel alphav3
    74652 
    74653 > hide #38 models
    74654 
    74655 > select subtract #38
    74656 
    74657 Nothing selected 
    74658 
    74659 > select add #39
    74660 
    74661 1856 atoms, 1891 bonds, 233 residues, 1 model selected 
    74662 
    74663 > show #39 models
    74664 
    74665 > color sel alphav3
    74666 
    74667 [Repeated 1 time(s)]
    74668 
    74669 > select subtract #39
    74670 
    74671 Nothing selected 
    74672 
    74673 > hide #39 models
    74674 
    74675 > show #41 models
    74676 
    74677 > select add #41
    74678 
    74679 4686 atoms, 4798 bonds, 586 residues, 1 model selected 
     1325[deleted to fit within ticket limits]
    746801326
    746811327> color sel betapv3